Arbuscular mycorrhizal fungi enhance soil carbon sequestration in the coalfields, northwest China

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Wang, Zhi-Gang; Bi, Yin-Li; Jiang, Bin; Zhakypbek, Yryszhan; Peng, Su-Ping; Liu, Wen-Wen; Liu, Hao

2016-10-01

Carbon storage is affected by photosynthesis (Pn) and soil respiration (Rs), which have been studied extensively in natural and agricultural systems. However, the effects of Pn and Rs on carbon storages in the presence of arbuscular mycorrhizal fungi (AMF) in coalfields remain unclear. A field experiment was established in 2014 in Shendong coal mining subsidence area. The treatments comprised two inoculation levels (inoculated with or without 100 g AMF inoculums per seedlings) and four plant species [wild cherry (Prunus discadenia Koebne L.), cerasus humilis (Prunus dictyneura Diels L.), shiny leaf Yellow horn (Xanthoceras sorbifolium Bunge L.) and apricot (Armeniaca sibirica L.)]. AMF increased Pn of four species ranging from 15.3% to 33.1% and carbon storage, averaged by 17.2% compared to controls. Soil organic carbon (OC), easily extractable glomalin-relation soil protein (EE-GRSP), and total glomalin-relation soil protein (T-GRSP) were significantly increased by AMF treatment. The effect of AMF on the sensitivity of Rs depended on soil temperature. The results highlighted the exponential models to explain the responses of Rs to soil temperature, and for the first time quantified AMF caused carbon sequestration and Rs. Thus, to our knowledge, AMF is beneficial to ecosystems through facilitating carbon conservation in coalfield soils.

Seasonal Patterns of Soil Respiration and Related Soil Biochemical Properties under Nitrogen Addition in Winter Wheat Field.

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Liang, Guopeng; Houssou, Albert A; Wu, Huijun; Cai, Dianxiong; Wu, Xueping; Gao, Lili; Li, Jing; Wang, Bisheng; Li, Shengping

2015-01-01

Understanding the changes of soil respiration under increasing N fertilizer in cropland ecosystems is crucial to accurately predicting global warming. This study explored seasonal variations of soil respiration and its controlling biochemical properties under a gradient of Nitrogen addition during two consecutive winter wheat growing seasons (2013-2015). N was applied at four different levels: 0, 120, 180 and 240 kg N ha(-1) year(-1) (denoted as N0, N12, N18 and N24, respectively). Soil respiration exhibited significant seasonal variation and was significantly affected by soil temperature with Q10 ranging from 2.04 to 2.46 and from 1.49 to 1.53 during 2013-2014 and 2014-2015 winter wheat growing season, respectively. Soil moisture had no significant effect on soil respiration during 2013-2014 winter wheat growing season but showed a significant and negative correlation with soil respiration during 2014-2015 winter wheat growing season. Soil respiration under N24 treatment was significantly higher than N0 treatment. Averaged over the two growing seasons, N12, N18 and N24 significantly increased soil respiration by 13.4, 16.4 and 25.4% compared with N0, respectively. N addition also significantly increased easily extractable glomalin-related soil protein (EEG), soil organic carbon (SOC), total N, ammonium N and nitrate N contents. In addition, soil respiration was significantly and positively correlated with β-glucosidase activity, EEG, SOC, total N, ammonium N and nitrate N contents. The results indicated that high N fertilization improved soil chemical properties, but significantly increased soil respiration.

Seasonal Patterns of Soil Respiration and Related Soil Biochemical Properties under Nitrogen Addition in Winter Wheat Field

Science.gov (United States)

Liang, Guopeng; Houssou, Albert A.; Wu, Huijun; Cai, Dianxiong; Wu, Xueping; Gao, Lili; Li, Jing; Wang, Bisheng; Li, Shengping

2015-01-01

Understanding the changes of soil respiration under increasing N fertilizer in cropland ecosystems is crucial to accurately predicting global warming. This study explored seasonal variations of soil respiration and its controlling biochemical properties under a gradient of Nitrogen addition during two consecutive winter wheat growing seasons (2013–2015). N was applied at four different levels: 0, 120, 180 and 240 kg N ha-1 year-1 (denoted as N0, N12, N18 and N24, respectively). Soil respiration exhibited significant seasonal variation and was significantly affected by soil temperature with Q10 ranging from 2.04 to 2.46 and from 1.49 to 1.53 during 2013–2014 and 2014–2015 winter wheat growing season, respectively. Soil moisture had no significant effect on soil respiration during 2013–2014 winter wheat growing season but showed a significant and negative correlation with soil respiration during 2014–2015 winter wheat growing season. Soil respiration under N24 treatment was significantly higher than N0 treatment. Averaged over the two growing seasons, N12, N18 and N24 significantly increased soil respiration by 13.4, 16.4 and 25.4% compared with N0, respectively. N addition also significantly increased easily extractable glomalin-related soil protein (EEG), soil organic carbon (SOC), total N, ammonium N and nitrate N contents. In addition, soil respiration was significantly and positively correlated with β-glucosidase activity, EEG, SOC, total N, ammonium N and nitrate N contents. The results indicated that high N fertilization improved soil chemical properties, but significantly increased soil respiration. PMID:26629695

Heavy metals in soils: a possible rule of Fungi

International Nuclear Information System (INIS)

Bedini, S.; Argese, E.; Giovannetti, M.; Gobbo, L.; Pietrangeli, B.

2009-01-01

The development of effective bio technologies is a mail goal in reclaiming polluted soils. Plants may represent a very useful tool, since they are able to reduce pollution by means of the synergic action of rhizospheric microorganisms. Arbuscular mycorrhizal (A M) fungi, root symbionts of most land plants, produce a proteinaceous substance named glomalin-related soil protein (GRSP) that has been demonstrated to interact with metallic ions. In this study we investigated the role of GRSP in the immobilization of potentially toxic heavy metals both in an agricultural and in a highly polluted soil. The results show that in heavy metal contaminated soils, GRSP can ease soil pollution by sequestering toxic metallic ions. On the other hand, in agricultural soils, where metallic elements are present in low concentrations, GRSP may be important also as a nutrient slow-releasing fraction of the soil organic matter.

Enrichment of arbuscular mycorrhizal fungi in a contaminated soil after rehabilitation.

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Lopes Leal, Patrícia; Varón-López, Maryeimy; Gonçalves de Oliveira Prado, Isabelle; Valentim Dos Santos, Jessé; Fonsêca Sousa Soares, Cláudio Roberto; Siqueira, José Oswaldo; de Souza Moreira, Fatima Maria

Spore counts, species composition and richness of arbuscular mycorrhizal fungi, and soil glomalin contents were evaluated in a soil contaminated with Zn, Cu, Cd and Pb after rehabilitation by partial replacement of the contaminated soil with non-contaminated soil, and by Eucalyptus camaldulensis planting with and without Brachiaria decumbens sowing. These rehabilitation procedures were compared with soils from contaminated non-rehabilitated area and non-contaminated adjacent soils. Arbuscular mycorrhizal fungi communities attributes were assessed by direct field sampling, trap culture technique, and by glomalin contents estimate. Arbuscular mycorrhizal fungi was markedly favored by rehabilitation, and a total of 15 arbuscular mycorrhizal fungi morphotypes were detected in the studied area. Species from the Glomus and Acaulospora genera were the most common mycorrhizal fungi. Number of spores was increased by as much as 300-fold, and species richness almost doubled in areas rehabilitated by planting Eucalyptus in rows and sowing B. decumbens in inter-rows. Contents of heavy metals in the soil were negatively correlated with both species richness and glomalin contents. Introduction of B. decumbens together with Eucalyptus causes enrichment of arbuscular mycorrhizal fungi species and a more balanced community of arbuscular mycorrhizal fungi spores in contaminated soil. Copyright © 2016 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.

Arbuscular mycorrhizal fungal communities and soil aggregation as affected by cultivation of various crops during the sugarcane fallow period

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Priscila Viviane Truber

2014-04-01

Full Text Available Management systems involving crop rotation, ground cover species and reduced soil tillage can improve the soil physical and biological properties and reduce degradation. The primary purpose of this study was to assess the effect of various crops grown during the sugarcane fallow period on the production of glomalin and arbuscular mycorrhizal fungi in two Latosols, as well as their influence on soil aggregation. The experiment was conducted on an eutroferric Red Latosol with high-clay texture (680 g clay kg-1 and an acric Red Latosol with clayey texture (440 g kg-1 clay in Jaboticabal (São Paulo State, Brazil. A randomized block design involving five blocks and four crops [soybean (S, soybean/fallow/soybean (SFS, soybean/millet/soybean (SMS and soybean/sunn hemp/soybean (SHS] was used to this end. Soil samples for analysis were collected in June 2011. No significant differences in total glomalin production were detected between the soils after the different crops. However, total external mycelium length was greater in the soils under SMS and SHS. Also, there were differences in easily extractable glomalin, total glomalin and aggregate stability, which were all greater in the eutroferric Red Latosol than in the acric Red Latosol. None of the cover crops planted in the fallow period of sugarcane improved aggregate stability in either Latosol.

Shifts in microbial communities and soil nutrients along a fire chronosequence in Alaskan boreal forest

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Treseder, K. K.; Mack, M. C.; Cross, A.

2002-12-01

Fires are important pathways of carbon loss from boreal forests, while microbial communities form equally important mechanisms for carbon accumulation between fires. We used a chronosequence in Alaska to examine shifts in microbial abundance and community composition in the several decades following severe fire, and then related these responses to soil characteristics in the same sites. The sites are located in upland forests near Delta Junction, Alaska, and represent stages at 3-, 15-, 45-, and over 100-yr following fire. Plant communities shift from herbaceous species in the youngest site, to deciduous shrubs and trees (e.g. Populus tremuloides and Salix) in the intermediate sites, to black spruce (Picea mariana) forest in the oldest site. Soil organic matter accumulated 2.8-fold over time. Potential mineralization was highest in the intermediate-aged sites, as was nitrification and standing pools of inorganic nitrogen. In contrast, inorganic phosphorus pools were highest immediately following fire, and then decreased nine-fold with age. As measured with BiologTM plates, bacterial diversity and abundance were greatest in the oldest sites. Plant roots in the intermediate-aged sites displayed higher colonization by ecto- and arbuscular mycorrhizal fungi than those in the youngest and oldest sites. Likewise, glomalin, a glycoprotein produced by arbuscular mycorrhizal fungi, was most abundant in the 14-yr old site. Glomalin is believed to contribute to the formation of water-stable aggregates in the soil. However, water stable aggregates were most abundant in the younger sites and did not follow the pattern of glomalin or arbuscular mycorrhizal abundance. Our results indicate that fire may maintain landscape-level diversity of microbial functional groups, and that carbon sequestration in microbial tissues (e.g. glomalin and fungal biomass) may be greatest in areas that have burned several decades earlier. Changes in soil structure may not be directly attributable to

The potential of arbuscular mycorrhizal fungi application on aggregrate stability in alfisol soil

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Syamsiyah, J.; Herawati, A.; Mujiyo

2018-03-01

The aim of this study was to determine the soil aggregate stability and its relationship with another variable in alfisol. The research used completely randomized design with four treatments: two sterilization levels (no sterilization and with sterilization) and two levels of mycorrhizal inoculation (no mycorrhizal and with mycorrhizal). Mycorrhizal (5 grams/pot) was inoculated before planting rice seeds. The soil aggregate stability was measured by wet-sieving and turbidimetric measurements. The results showed that soil aggregate stability was higher in mycorrhizal inoculated than non-mycorrhizal inoculated treatment, by 5% in sterilization soil and 3.2% in non-sterilization soil. The correlation analysis indicated that soil aggregate stability has a tight relationship with spore population, total glomalin, available glomalin, dry weight, tiller number of plant, and soil organic C. Inoculation of mycorrhizal contributed to stabilize soil aggregates in alfisol

Relación entre densidad de hifas de hongos micorrizógenos arbusculares y producción de glomalina con las características físicas y químicas de suelos bajo cero labranza Relationships between arbuscular mycorrhizal hyphal density and glomalin production with physical and chemical characteristics of soils under no-tillage

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FERNANDO R BORIE

2000-12-01

arbuscular mycorrhizal characteristics such as extraradical hyphal density and the production of glomalin, an insoluble glycoprotein exuded by arbuscular mycorrhizal hyphae, with physical and chemical properties of an alfisol under NT. Soils at different depths (0-50; 50-100 and 100-200 mm were collected from plots with four (4 NT, seven (7 NT and twenty (20 NT years managed under NT system. Soil from a natural prairie was also sampled as a control for comparison of management agricultural systems. Data obtained showed that pH, available-P, total P and organic carbon increased according to the time under NT. The percentage of porosity severely decreased in the 20 NT soil especially at two upper horizons. The percentage of water stable soil aggregates was similar in all the soils with exception of 7 NT soil probably due to Lupinus albus was the preceding crop. Total and easily extractable glomalin increased according to the years under NT representing about the 0,36% of organic matter in the upper layer of the 20 NT soil. Close relationships were found between total and easily extractable glomalin content (r² = 0.97, organic C and total glomalin (r² = 0.96, pH and mycorrhizal hyphal density (r² = 0.72, mycorrhizal hyphal density and total P (r² = 0.74. No clear relationships between soil water stable aggregates and glomalin concentration or hyphal density were observed suggesting that aggregation and stabilization in those soils could be governed by other type of interactions

Artificial climate warming positively affects arbuscular mycorrhizae but decreases soil aggregate water stability in an annual grassland

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Rillig, M.C.; Wright, S.F.; Shaw, M.R.; Field, C.B.

2002-04-01

Despite the importance of arbuscular mycorrhizae to the functioning of terrestrial ecosystems (e.g. nutrient uptake, soil aggregation), and the increasing evidence of global warming, responses of arbuscular mycorrhizal fungi (AMF) to climate warming are poorly understood. In a field experiment using infrared heaters, we found effects of warming on AMF after one growing season in an annual grassland, in the absence of any effects on measured root parameters (weight, length, average diameter). AMF soil hyphal length was increased by over 40% in the warmed plots, accompanied by a strong trend for AMF root colonization increase. In the following year, root weight was again not significantly changed, and AMF root colonization increased significantly in the warmed plots. Concentration of the soil protein glomalin, a glycoprotein produced by AMF hyphae with importance in soil aggregation, was decreased in the warmed plots. Soil aggregate water stability, measured for five diameter size classes, was also decreased significantly. In the following year, soil aggregate weight in two size classes was decreased significantly, but the effect size was very small. These results indicate that ecosystem warming may have stimulated carbon allocation to AMF. Other factors either influenced glomalin decomposition or production, hence influencing the role of these symbionts in soil aggregation. The observed small changes in soil aggregation, if widespread among terrestrial ecosystems, could have important consequences for soil carbon storage and erosion in a warmed climate, especially if there are cumulative effects of warming. (au)

Some aspects of interrelations between fungi and other biota in forest soil.

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Krivtsov, Vladimir; Griffiths, Bryan S; Salmond, Ross; Liddell, Keith; Garside, Adam; Bezginova, Tanya; Thompson, Jacqueline A; Staines, Harry J; Watling, Roy; Palfreyman, John W

2004-08-01

Interrelations of fungal mycelium with other soil biota are of paramount importance in forestry and soil ecology. Here we present the results of statistical analysis of a comprehensive data set collected in the first (and the only) British fungus sanctuary over a period of four months. The variables studied included a number of soil properties, bacteria, protozoan flagellates, ciliates and amoebae, microbial and plant feeding nematodes, various microarthropods, and two fungal biomarkers--glomalin and ergosterol. One way ANOVA showed that the dynamics of the microbiota studied was influenced by seasonal changes. Superimposed on these changes, however, was variability due to biological interactions and habitat characteristics. Two fungal biomarkers, ergosterol and glomalin, were differently influenced by other biota and abiotic variables. The results indicate that the dynamics of soil fungi is influenced not only by soil microarthropods, but also by those found in forest litter. The overall outcome, therefore, is likely to be very complex and will depend upon specific conditions of any particular ecosystem.

Factors responsible for the patchy distribution of natural soil water repellency in Mediterranean semiarid forest

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Lozano, E.; Jiménez-Pinilla, P.; Mataix-Solera, J.; González-Pérez, J. A.; García-Orenes, F.; Torres, M. P.; Arcenegui, V.; Mataix-Beneyto, J.

2012-04-01

H and between SOM and pH for all except for Q. rotundifolia. However, the negative correlation found between pH and persistence of WR seems to be related to soil organic matter (SOM) content for all vegetal species. Glomalin exudates from arbuscular mycorrhizal fungi in soil revealed significant differences between species. However, the first results do not point to a direct relationship between EEG content and WR but to soil mineralogy or certain components within SOM pool i.e. litter debris degradation products or specific components within the glomalin extract, as main factors affecting soil WR. Nonetheless, since some samples with the same SOM content (including some under the same vegetation cover) showed different WR persistence, complementary research including a more detailed characterization of most soil functional fractions (SOM and clays) is planned in order to elucidat the main factors influencing the presence and persistence of WR in soils under Mediterranean semiarid forest. Keywords: Water repellency, hydrophobicity, easily extractable glomalin, mycelium, arbuscular mycorrhizal fungi.

Symbiosis of Arbuscular Mycorrhizal Fungi and Robinia pseudoacacia L. Improves Root Tensile Strength and Soil Aggregate Stability.

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Zhang, Haoqiang; Liu, Zhenkun; Chen, Hui; Tang, Ming

2016-01-01

Robinia pseudoacacia L. (black locust) is a widely planted tree species on Loess Plateau for revegetation. Due to its symbiosis forming capability with arbuscular mycorrhizal (AM) fungi, we explored the influence of arbuscular mycorrhizal fungi on plant biomass, root morphology, root tensile strength and soil aggregate stability in a pot experiment. We inoculated R. pseudoacacia with/without AM fungus (Rhizophagus irregularis or Glomus versiforme), and measured root colonization, plant growth, root morphological characters, root tensile force and tensile strength, and parameters for soil aggregate stability at twelve weeks after inoculation. AM fungi colonized more than 70% plant root, significantly improved plant growth. Meanwhile, AM fungi elevated root morphological parameters, root tensile force, root tensile strength, Glomalin-related soil protein (GRSP) content in soil, and parameters for soil aggregate stability such as water stable aggregate (WSA), mean weight diameter (MWD) and geometric mean diameter (GMD). Root length was highly correlated with WSA, MWD and GMD, while hyphae length was highly correlated with GRSP content. The improved R. pseudoacacia growth, root tensile strength and soil aggregate stability indicated that AM fungi could accelerate soil fixation and stabilization with R. pseudoacacia, and its function in revegetation on Loess Plateau deserves more attention.

Contribution of arbuscular mycorrhizal fungi of sedges to soil aggregation along an altitudinal alpine grassland gradient on the Tibetan Plateau.

Science.gov (United States)

Li, Xiaoliang; Zhang, Junling; Gai, Jingping; Cai, Xiaobu; Christie, Peter; Li, Xiaolin

2015-08-01

The diversity of arbuscular mycorrhizal fungi (AMF) in sedges on the Tibetan Plateau remains largely unexplored, and their contribution to soil aggregation can be important in understanding the ecological function of AMF in alpine ecosystems. Roots of Kobresia pygmaea C.B. Clarke and Carex pseudofoetida Kük. in alpine Kobresia pastures along an elevational transect (4149-5033 m) on Mount Mila were analysed for AMF diversity. A structural equation model was built to explore the contribution of biotic factors to soil aggregation. Sedges harboured abundant AMF communities covering seven families and some operational taxonomic units are habitat specific. The two plant species hosted similar AMF communities at most altitudes. The relative abundance of the two sedges contributed largely to soil macroaggregates, followed by extraradical mycorrhizal hyphae (EMH) and total glomalin-related soil protein (T-GRSP). The influence of plant richness was mainly due to its indirect influence on T-GRSP and EMH. There was a strong positive correlation between GRSP and soil total carbon and nitrogen. Our results indicate that mycorrhization might not be a major trait leading to niche differentiation of the two co-occurring sedge species. However, AMF contribute to soil aggregation and thus may have the potential to greatly influence C and N cycling in alpine grasslands. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Natural attenuation in a slag heap contaminated with cadmium: The role of plants and arbuscular mycorrhizal fungi

International Nuclear Information System (INIS)

Gonzalez-Chavez, M.C.; Carrillo-Gonzalez, R.; Gutierrez-Castorena, M.C.

2009-01-01

A field study of the natural attenuation occurring in a slag heap contaminated with high available cadmium was carried out. The aims of this research were: to determine plants colonizing this slag heap; to analyze colonization and morphological biodiversity of spores of arbuscular mycorrhizal fungi (AMF); to determine spore distribution in undisturbed samples; to know mycelium and glomalin abundance in the rhizosphere of these plants, and to investigate glomalin participation in Cd-stabilization. Forming vegetal islands, 22 different pioneering plant species from 11 families were colonizing the slag heap. The most common plants were species of Fabaceae, Asteraceae and Poaceae. Almost all plants were hosting AMF in their roots, and spores belonging to Gigaspora, Glomus, Scutellospora and Acaulospora species were observed. Micromorphological analysis showed that spores were related to decomposing vegetal residues and excrements, which means that mesofauna is contributing to their dispersion in the groundmass. Mycelium mass ranged from 0.11 to 26.3 mg/g, which contained between 13 and 75 mg of glomalin/g. Slag-extracted total glomalin was between 0.36 and 4.74 mg/g. Cadmium sequestered by glomalin extracted from either slag or mycelium was 0.028 mg/g. The ecological implication of these results is that organisms occupying vegetal patches are modifying mine residues, which contribute to soil formation

Natural attenuation in a slag heap contaminated with cadmium: The role of plants and arbuscular mycorrhizal fungi

Energy Technology Data Exchange (ETDEWEB)

Gonzalez-Chavez, M.C. [Programa de Edafologia. Colegio de Postgraduados en Ciencias Agricolas, Campus Montecillo. Carretera Mexico-Texcoco, km 36.5. Montecillo, Texcoco, Mexico, 56230 (Mexico)], E-mail: carmeng@colpos.mx; Carrillo-Gonzalez, R.; Gutierrez-Castorena, M.C. [Programa de Edafologia. Colegio de Postgraduados en Ciencias Agricolas, Campus Montecillo. Carretera Mexico-Texcoco, km 36.5. Montecillo, Texcoco, Mexico, 56230 (Mexico)

2009-01-30

A field study of the natural attenuation occurring in a slag heap contaminated with high available cadmium was carried out. The aims of this research were: to determine plants colonizing this slag heap; to analyze colonization and morphological biodiversity of spores of arbuscular mycorrhizal fungi (AMF); to determine spore distribution in undisturbed samples; to know mycelium and glomalin abundance in the rhizosphere of these plants, and to investigate glomalin participation in Cd-stabilization. Forming vegetal islands, 22 different pioneering plant species from 11 families were colonizing the slag heap. The most common plants were species of Fabaceae, Asteraceae and Poaceae. Almost all plants were hosting AMF in their roots, and spores belonging to Gigaspora, Glomus, Scutellospora and Acaulospora species were observed. Micromorphological analysis showed that spores were related to decomposing vegetal residues and excrements, which means that mesofauna is contributing to their dispersion in the groundmass. Mycelium mass ranged from 0.11 to 26.3 mg/g, which contained between 13 and 75 mg of glomalin/g. Slag-extracted total glomalin was between 0.36 and 4.74 mg/g. Cadmium sequestered by glomalin extracted from either slag or mycelium was 0.028 mg/g. The ecological implication of these results is that organisms occupying vegetal patches are modifying mine residues, which contribute to soil formation.

Disruption of mycorrhizal extraradical mycelium and changes in leaf water status and soil aggregate stability in rootbox-grown trifoliate orange

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Ying-Ning eZou

2015-03-01

Full Text Available Arbuscular mycorrhizas possess well developed extraradical mycelium (ERM network that enlarge the surrounding soil for better acquisition of water and nutrients, besides soil aggregation. Distinction in ERM functioning was studied under a rootbox system, which consisted of root+hyphae and root-free hyphae compartments separated by 37-μm nylon mesh with an air gap. Trifoliate orange (Poncirus trifoliata seedlings were inoculated with Funneliformis mosseae in root+hyphae compartment, and the ERM network was established between the two compartments. The ERM network of air gap was disrupted before 8 h of the harvest (one time disruption or multiple disruptions during seedlings acclimation. Our results showed that mycorrhizal inoculation induced a significant increase in growth (plant height, stem diameter, and leaf, stem, and root biomass and physiological characters (leaf relative water content, leaf water potential, and transpiration rate, irrespective of ERM status. Easily-extractable glomalin-related soil protein (EE-GRSP and total GRSP (T-GRSP concentration and mean weight diameter (MWD, an indicator of soil aggregate stability were significantly higher in mycorrhizosphere of root+hyphae and root-free hyphae compartments than non-mycorrhizosphere. One time disruption of ERM network did not influence plant growth and soil properties but only notably decreased leaf water. Periodical disruption of ERM network at weekly interval markedly inhibited the mycorrhizal roles on plant growth, leaf water, GRSP production, and MWD in root+hyphae and hyphae chambers. EE-GRSP was the most responsive GRSP fraction to changes in leaf water and MWD under root+hyphae and hyphae conditions. It suggests that effect of peridical disruption of ERM network was more impactful than one-time disruption of ERM network with regard to leaf water, plant growth, and aggregate stability responses, thereby, implying ERM network aided in developing the host plant metabolically

Sequestration of Carbon in Mycorrhizal Fungi Under Nitrogen Fertilization

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Treseder, K. K.; Turner, K. M.

2005-12-01

Mycorrhizal fungi are root symbionts that facilitate plant uptake of soil nutrients in exchange for plant carbohydrates. They grow in almost every terrestrial ecosystem on earth, form relationships with about 80% of plant species, and receive 10 to 20% of the carbon fixed by their host plants. As such, they could potentially sequester a significant amount of carbon in ecosystems. We hypothesized that nitrogen fertilization would decrease carbon storage in mycorrhizal fungi, because plants should reduce investment of carbon in mycorrhizal fungi when nitrogen availability is high. We measured the abundance of two major groups of mycorrhizal fungi, arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) fungi, in control and nitrogen-fertilized plots within three boreal ecosystems of inland Alaska. The ecosystems represented different recovery stages following severe fire, and comprised a young site dominated by AM fungi, an old site dominated by ECM fungi, and an intermediate site co-dominated by both groups. Pools of mycorrhizal carbon included root-associated AM and ECM structures, soil-associated AM hyphae, and soil-associated glomalin. Glomalin is a glycoprotein produced only by AM fungi. It is present in the cell walls of AM hyphae, and then is deposited in the soil as the hyphae senesce. Nitrogen significantly altered total mycorrhizal carbon pools, but its effect varied by site (site * N interaction, P = 0.05). Under nitrogen fertilization, mycorrhizal carbon was reduced from 99 to 50 g C m2 in the youngest site, was increased from 124 to 203 g C m2 in the intermediate-aged site, and remained at 35 g C m2 in the oldest site. The changes in total mycorrhizal carbon stocks were driven mostly by changes in glomalin (site * N interaction, P = 0.05), and glomalin stocks were strongly correlated with AM hyphal abundance (P stocks within root-associated AM structures increased significantly with nitrogen fertilization across all sites (P = 0.001), as did root

Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

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Chourey, Karuna [ORNL; Jansson, Janet [Lawrence Berkeley National Laboratory (LBNL); Verberkmoes, Nathan C [ORNL; Shah, Manesh B [ORNL; Chavarria, Krystle L. [Lawrence Berkeley National Laboratory (LBNL); Tom, Lauren M [Lawrence Berkeley National Laboratory (LBNL); Brodie, Eoin L. [Lawrence Berkeley National Laboratory (LBNL); Hettich, Robert {Bob} L [ORNL

2010-01-01

We present a novel direct protocol for deep proteome characterization of microorganisms in soil. The method employs thermally assisted detergent-based cellular lysis (SDS) of soil samples, followed by TCA precipitation for proteome extraction/cleanup prior to liquid chromatography-mass spectrometric characterization. This approach was developed and optimized using different soils inoculated with genome-sequenced bacteria (Gram-negative Pseudomonas putida or Gram-positive Arthrobacter chlorophenolicus). Direct soil protein extraction was compared to protein extraction from cells isolated from the soil matrix prior to lysis (indirect method). Each approach resulted in identification of greater than 500 unique proteins, with a wide range in molecular mass and functional categories. To our knowledge, this SDS-TCA approach enables the deepest proteome characterizations of microbes in soil to date, without significant biases in protein size, localization, or functional category compared to pure cultures. This protocol should provide a powerful tool for ecological studies of soil microbial communities.

Sequestration of soil nitrogen as tannin-protein complexes may improve the competitive ability of sheep laurel (Kalmia angustifolia) relative to black spruce (Picea mariana).

Science.gov (United States)

Joanisse, G D; Bradley, R L; Preston, C M; Bending, G D

2009-01-01

The role of litter tannins in controlling soil nitrogen (N) cycling may explain the competitive ability of Kalmia relative to black spruce (Picea mariana), although this has not been demonstrated experimentally. Here, the protein-precipitation capacities of purified tannins and leaf extracts from Kalmia and black spruce were compared. The resistance to degradation of tannin-protein precipitates from both species were compared by monitoring carbon (C) and N dynamics in humus amended with protein, purified tannins or protein-tannin precipitates. The purity of the precipitates was verified using solid-state (13)C nuclear magnetic resonance (NMR) spectra. The ability of mycorrhizal fungi associated with both species to grow on media amended with tannin-protein complexes as the principal N source was also compared. The protein precipitation capacity of Kalmia tannins was superior to those of black spruce. Humus amended with protein increased both mineral and microbial N, whereas humus amended with tannin-protein precipitates increased dissolved organic N. Mycorrhizal fungi associated with Kalmia showed better growth than those associated with black spruce when N was provided as tannin-protein precipitates. These data suggest that Kalmia litter increases the amount of soil N sequestered as tannin-protein complexes, which may improve the competitive ability of Kalmia relative to black spruce by favouring N uptake by mycorrhizas associated with the former.

Effect of Compost Application on Some Properties of a Volcanic Soil from Central South Chile Efecto de la Aplicación de Compost sobre Algunas Propiedades de un Suelo Volcánico de La Región Centro-Sur de Chile

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Pedro José Valarini

2009-09-01

Full Text Available Soil compost application is a common soil management practice used by small farmers of Central-South Chile that produces positive effects on soil properties and also promotes presence and activity of arbuscular mycorrhizal fungi (AMF. This fungi form symbiosis with plant roots improving plant nutrition, as well as producing glomalin, a glycoprotein that has been associated with soil aggregation stability. Therefore, the aim of this study was to evaluate, in an Ultisol from Central-South Chile, the effect of different doses of compost on some soil characteristics at the end of the third year of a crop sequence including wheat (Triticum aestivum L., bean (Phaseolus vulgaris L., and grassland (Lolium multiflorum Lam. associated with Trifolium repens L.. Studied soil characteristics included chemical (pH, available-P, organic C, biological (C and N biomass, AMF spore number, root colonization percentage, mycelium length, and glomalin content, as well as physical parameters (water holding capacity [WHC], and water stable aggregates [WSA]. Results showed that, in general, compost application increased soil pH, mycorrizal roots, mycelium length, glomalin levels, and WSA. Significant relationships were found between C and N biomass, C biomass and WSA, C biomass and glomalin, WSA and WHC, among others. Results suggest that compost application to this type of soil is a feasible option as a fertilizer substitute, and a way to avoid soil erosion by small local farmers involved in organic agriculture.La aplicación de compost al suelo, práctica habitual en predios de pequeños agricultores de la región centro-sur de Chile, produce efectos positivos en sus propiedades y promueve la presencia y actividad de los hongos micorrícicos arbusculares (AMF. Estos hongos forman simbiosis con las raíces de las plantas mejorando su nutrición y además producen una glicoproteína llamada glomalina, la cual ha sido relacionada con la estabilidad de los agregados de

Protein changes in Lepidium sativum L. exposed to Hg during soil phytoremediation.

Science.gov (United States)

Smolinska, Beata; Szczodrowska, Agnieszka; Leszczynska, Joanna

2017-08-03

Some investigations have been carried out in this study to find the best technique of soil reclamation in mercurypolluted soil. In this study, we examined Lepidium sativum L. as a plant useful for Hg phytoextraction. The simultaneous application of compost and thiosulfate was explored as a possible method of enhancing the process of phytoextraction. The results of the investigations of plant protein changes during assisted Hg phytoextraction were also provided. The results of the study show that combined use of compost and thiosulfate significantly increased both the total Hg accumulation and its translocation to aerial plant tissues. Plant protein analysis showed that L. sativum L. has the ability to respond to environmental stress condition by the activation of additional proteins. The additional proteins, like homocysteine methyltransferase, ribulose bisphosphate carboxylases (long and short chains), 14-3-3-like protein, and biosynthesis-related 40S ribosomal protein S15, were activated in plant shoots only in experiments carried out in Hg-polluted soil. There were no protein changes observed in plants exposed to compost and thiosulfate. It suggests that the combined use of compost and thiosulfate decreased Hg toxicity.

Protein analysis in dissolved organic matter: What proteins from organic debris, soil leachate and surface water can tell us - a perspective

Directory of Open Access Journals (Sweden)

W. X. Schulze

2005-01-01

Full Text Available Mass spectrometry based analysis of proteins is widely used to study cellular processes in model organisms. However, it has not yet routinely been applied in environmental research. Based on observations that protein can readily be detected as a component of dissolved organic matter (DOM, this article gives an example about the possible use of protein analysis in ecology and environmental sciences focusing on different terrestrial ecosystems. At this stage, there are two areas of interest: (1 the identification of phylogenetic groups contributing to the environmental protein pool, and (2 identification of the organismic origin of specific enzymes that are important for ecosystem processes. In this paper, mass spectrometric protein analysis was applied to identify proteins from decomposing plant material and DOM of soil leachates and surface water samples derived from different environments. It is concluded, that mass spectrometric protein analysis is capable of distinguishing phylogenetic origin of proteins from litter protein extracts, leachates of different soil horizons, and from various sources of terrestrial surface water. Current limitation is imposed by the limited knowledge of complete genomes of soil organisms. The protein analysis allows to relate protein presence to biogeochemical processes, and to identify the source organisms for specific active enzymes. Further applications, such as in pollution research are conceivable. In summary, the analysis of proteins opens a new area of research between the fields of microbiology and biogeochemistry.

Adsorption, desorption and biodegradation in soil of CrylAb toxin protein from Bt transgenic rice

International Nuclear Information System (INIS)

Wang Haiyan; Ye Qingfu

2004-01-01

The equilibrium adsorption and binding of CrylAb toxin from Bt transgenic rice, to 7 different soils and the biodegradation of the bound toxin were studied. The adsorption rate of Bt in soils improved with decreasing of the added Bt purified protein concentration. Adsorption rate (125 and 780 nm/ml) in powdery-muddy paddy soil, Fluvio-marine yellow loamy and Coastal saline soil were 24.85% and 40.81%, 9.1% and 31.67%, 12.47% and 30.75%, respectively. Desorption rate in the soils dropped with content of soil-absorbed protein decreased. Its adsorption ratio in powdery-muddy paddy soil was 12.95% and 5.88%, respectively. The relationship between adsorption amount and concentration of Bt purified protein in different soils was notably positive correlation (P 0 e -λt ); Half life of Bt protein in soils was among 15.2-97.6 d; Degradation of pruified Bt protein was rapid at the initial incubation time (30 d), but slow at 150d incubation; The degradation of purified Bt protein in Intertidal sandy soil was the slowest with half-life of 97.6d. The protein in the soil amended with 1.25 μg/g could be still detectable after incubation of 345d; the degradation of purified Bt protein in Coastal saline soil and Aquic light saline sandy soil were faster. Their half-lives were 19.6 d and 15.2 d, respecitvely. The residue time of Bt purified protein in the soils was all more than 150 d. (authors)

Cry1Ab protein from Bt transgenic rice does not residue in rhizosphere soil

International Nuclear Information System (INIS)

Wang Haiyan; Ye Qingfu; Wang Wei; Wu Licheng; Wu Weixiang

2006-01-01

Expression of Cry1Ab protein in Bt transgenic rice (KMD) and its residue in the rhizosphere soil during the whole growth in field, as well as degradation of the protein from KMD straw in five soils under laboratory incubation were studied. The residue of Cry1Ab protein in KMD rhizosphere soil was undetectable (below the limit of 0.5 ng/g air-dried soil). The Cry1Ab protein contents in the shoot and root of KMD were 3.23-8.22 and 0.68-0.89 μg/g (fresh weight), respectively. The half-lives of the Cry1Ab protein in the soils amended with KMD straw (4%, w/w) ranged from 11.5 to 34.3 d. The residence time of the protein varied significantly in a Fluvio-marine yellow loamy soil amended with KMD straw at the rate of 3, 4 and 7%, with half-lives of 9.9, 13.8 and 18 d, respectively. In addition, an extraction method for Cry1Ab protein in soil was developed, with extraction efficiencies of 46.4-82.3%. - Cry1Ab protein was not detected in the rhizosphere soil of field-grown Bt transgenic rice

Temperature effects on protein depolymerization and amino acid immobilization rates in soils.

Science.gov (United States)

Noll, Lisa; Hu, Yuntao; Zhang, Shasha; Zheng, Qing; Wanek, Wolfgang

2017-04-01

Increasing N deposition, land use change, elevated atmospheric CO2 concentrations and global warming have altered soil nitrogen (N) cycling during the last decades. Those changes affected ecosystem services, such as C and N sequestration in soils, which calls for a better understanding of soil N transformation processes. The cleavage of macromolecular organic N by extracellular enzymes maintains an ongoing flow of new bioavailable organic N into biotic systems and is considered to be the bottle neck of terrestrial N cycling in litter and soils. Recent studies showed that protein depolymerization is susceptible to changes in C and N availabilities. Based on general biological observations the temperature sensitivity of soil organic N processes is expected to depend on whether they are rather enzyme limited (i.e. Q10=2) or diffusion limited (i.e. Q10= 1.0 - 1.3). However, temperature sensitivities of protein depolymerization and amino acid immobilization are still unknown. We therefore here report short-term temperature effects on organic N transformation rates in soils differing in physicochemical parameters but not in climate. Soil samples were collected from two geologically distinct sites close to the LFZ Raumberg-Gumpenstein, Styria, Austria, each from three different management types (arable land, grassland, forest). Four replicates of mineral soil were taken from every site and management type. The area provides a unique opportunity to study geological and management controls in soils without confounding effects of climate and elevation. The soils differ in several soil chemical parameters, such as soil pH, base saturation, soil C: N ratio and SOM content as well as in soil physical parameters, such as soil texture, bulk density and water holding capacity. Soils were pre-incubated at 5, 15 and 25˚ C for one day. Protein depolymerization rates and amino acid immobilization rates were assessed by an isotope pool dilution assay with 15N labeled amino acids at

Proteomic signatures differentiating Bacillus anthracis Sterne sporulation on soil relative to laboratory media.

Science.gov (United States)

Wunschel, D S; Hutchison, J R; Deatherage Kaiser, B L; Merkley, E D; Hess, B M; Lin, A; Warner, M G

2017-12-18

The process of sporulation is vital for the stability and infectious cycle of Bacillus anthracis. The spore is the infectious form of the organism and therefore relevant to biodefense. While the morphological and molecular events occurring during sporulation have been well studied, the influence of growth medium and temperature on the proteins expressed in sporulated cultures is not well understood. Understanding the features of B. anthracis sporulation specific to natural vs. laboratory production will address an important question in microbial forensics. In an effort to bridge this knowledge gap, a system for sporulation on two types of agar-immobilized soils was used for comparison to cultures sporulated on two common types of solid laboratory media, and one liquid sporulation medium. The total number of proteins identified as well as their identity differed between samples generated in each medium and growth temperature, demonstrating that sporulation environment significantly impacts the protein content of the spore. In addition, a subset of proteins common in all of the soil-cultivated samples was distinct from the expression profiles in laboratory medium (and vice versa). These differences included proteins involved in thiamine and phosphate metabolism in the sporulated cultures produced on soils with a notable increase in expression of ATP binding cassette (ABC) transporters annotated to be for phosphate and antimicrobial peptides. A distinct set of ABC transporters for amino acids, sugars and oligopeptides were found in cultures produced on laboratory media as well as increases in carbon and amino acid metabolism-related proteins. These protein expression changes indicate that the sporulation environment impacts the protein profiles in specific ways that are reflected in the metabolic and membrane transporter proteins present in sporulated cultures.

Soil properties related to 60Co bioavailability in tropical soils

International Nuclear Information System (INIS)

Bartoly, Flavia; Wasserman, Maria Angelica; Rochedo, Elaine Ruas Rodriguez; Viana, Aline Gonzalez; Souza, Rodrigo Camara; Oliveira, Giselle Rodrigues; Reis, Wagner Goncalves Soares; Perez, Daniel Vidal

2005-01-01

This work presents the results of field experiments to obtain soil to plants Transfer factor (TF) for 60 Co in reference plants cultivated in Ferralsol, Acrisol and Nitisol. These soils represent the majority of Brazilian agricultural area. Values of TF varied from 0.001 to 0.05 for corn and from 0.001 to 0.81 for cabbage. Results of 60 Co TF were discussed in relation to the physical and chemical properties of the soils and 60 Co geochemical partition. The sequential chemical extraction showed that more than 40% of the 60 Co present in the soils are associated to manganese oxides. These results will provide regional values for parameters used in the environmental radiological modeling aiming to optimize the planning of emergency interventions or the waste management related to tropical soils. (author)

Influence of the Amino Acid Sequence on Protein-Mineral Interactions in Soil

Science.gov (United States)

Chacon, S. S.; Reardon, P. N.; Purvine, S.; Lipton, M. S.; Washton, N.; Kleber, M.

2017-12-01

The intimate associations between protein and mineral surfaces have profound impacts on nutrient cycling in soil. Proteins are an important source of organic C and N, and a subset of proteins, extracellular enzymes (EE), can catalyze the depolymerization of soil organic matter (SOM). Our goal was to determine how variation in the amino acid sequence could influence a protein's susceptibility to become chemically altered by mineral surfaces to infer the fate of adsorbed EE function in soil. We hypothesized that (1) addition of charged amino acids would enhance the adsorption onto oppositely charged mineral surfaces (2) addition of aromatic amino acids would increase adsorption onto zero charged surfaces (3) Increase adsorption of modified proteins would enhance their susceptibility to alterations by redox active minerals. To test these hypotheses, we generated three engineered proxies of a model protein Gb1 (IEP 4.0, 6.2 kDA) by inserting either negatively charged, positively charged or aromatic amino acids in the second loop. These modified proteins were allowed to interact with functionally different mineral surfaces (goethite, montmorillonite, kaolinite and birnessite) at pH 5 and 7. We used LC-MS/MS and solution-state Heteronuclear Single Quantum Coherence Spectroscopy NMR to observe modifications on engineered proteins as a consequence to mineral interactions. Preliminary results indicate that addition of any amino acids to a protein increase its susceptibility to fragmentation and oxidation by redox active mineral surfaces, and alter adsorption to the other mineral surfaces. This suggest that not all mineral surfaces in soil may act as sorbents for EEs and chemical modification of their structure should also be considered as an explanation for decrease in EE activity. Fragmentation of proteins by minerals can bypass the need to produce proteases, but microbial acquisition of other nutrients that require enzymes such as cellulases, ligninases or phosphatases

Persistence of detectable insecticidal proteins from Bacillus thuringiensis (Cry) and toxicity after adsorption on contrasting soils

International Nuclear Information System (INIS)

Hung, T.P.; Truong, L.V.; Binh, N.D.; Frutos, R.; Quiquampoix, H.; Staunton, S.

2016-01-01

Insecticidal Cry, or Bt, proteins are produced by the soil-endemic bacterium, Bacillus thuringiensis and some genetically modified crops. Their environmental fate depends on interactions with soil. Little is known about the toxicity of adsorbed proteins and the change in toxicity over time. We incubated Cry1Ac and Cry2A in contrasting soils subjected to different treatments to inhibit microbial activity. The toxin was chemically extracted and immunoassayed. Manduca sexta was the target insect for biotests. Extractable toxin decreased during incubation for up to four weeks. Toxicity of Cry1Ac was maintained in the adsorbed state, but lost after 2 weeks incubation at 25 °C. The decline in extractable protein and toxicity were much slower at 4 °C with no significant effect of soil sterilization. The major driving force for decline may be time-dependent fixation of adsorbed protein, leading to a decrease in the extraction yield in vitro, paralleled by decreasing solubilisation in the larval gut. - Graphical abstract: Biotest, presenting Cry-contaminated feed to Manduca sexta larvae in individual Perspex boxes. Display Omitted - Highlights: • Toxicity of Cry protein is initially conserved after adsorption on soil. • Toxicity and extractability decline with time, more rapidly at 25 °C than 4 °C. • Similar dynamics of Cry1AC and Cry2A on soil with varying texture and organic C. • Sterilization of soil does not change Cry dynamics or temperature effect in soil. • Cry decline is determined by progressive fixation on soil not microbial breakdown. - Toxicity was initially maintained after adsorption on soil and both extractable Cry and toxicity declined rapidly, more slowly at low temperature, due to different fixation dynamics. Toxicity of Cry protein is initially conserved after adsorption on soil.

Natural radionuclides in soils - relation between soil properties and the activities

International Nuclear Information System (INIS)

Fujiyoshi, Ryoko; Nakayama, Masashi; Sawamura, Sadashi

2000-01-01

Vertical profiles of natural radionuclides (K-40 and Ra-226) have been investigated in a soil core with 8 m in depth to elucidate its relation to the bed rock activity and to several soil properties. Pattern of the Ra-226 activity with soil depth suggests inhomogeneity of this nuclide during the accumulating process. Radiometric sorption experiments with Pb-210 as a tracer gave the result that almost all Pb(II) in the soil solution disappeared to be sorbed to the soil components

Production and quality of Urochloa decumbens (stapf r.d. webster forage co-related to the physical and chemical properties of the soil

Directory of Open Access Journals (Sweden)

Flávio Carlos Dalchiavon

Full Text Available ABSTRACT Frequently degraded pastureland characterized by low soil fertility and compacted surface is the basic environment of Brazilian livestock. The physical and chemical characterization of soil and its co-relationship with forage production are determining factors for performance of animals raised on pasture. The objective was to analyze the forage production of Urochloa decumbens grass correlated, linearly and spatially, with physical and chemical attributes of a savannah soil in Selvíria - MS, Brazil. A geostatistical web was introduced for the collection of soil and plant data, with 120 sampling sites within an area of 56.09 ha. The descriptive analysis of the data was undertaken and linear co-relationships, both simple and multiple, were established between plant and soil properties. Semivariograms were modeled and their respective krigings and cross-validations obtained, coupled to co-krigings (plant and soil. Production of dry matter and crude protein rates of U. decumbens may be estimated by regressions and the mechanical resistance to penetration and gravimetric humidity of the soil evaluated. Since organic matter rate and the gravimetric humidity of the soil are co-related spatially with the rate of crude protein of U. decumbens, they are the best factors to calculate or increase the forage crude protein rate.

Pathogenic prion protein is degraded by a manganese oxide mineral found in soils

Science.gov (United States)

Russo, F.; Johnson, C.J.; McKenzie, D.; Aiken, Judd M.; Pedersen, J.A.

2009-01-01

Prions, the aetiological agents of transmissible spongiform encephalopathies, exhibit extreme resistance to degradation. Soil can retain prion infectivity in the environment for years. Reactive soil components may, however, contribute to the inactivation of prions in soil. Members of the birnessite family of manganese oxides (MnO2) rank among the strongest natural oxidants in soils. Here, we report the abiotic degradation of pathogenic prion protein (PrPTSE) by a synthetic analogue of naturally occurring birnessite minerals. Aqueous MnO2 suspensions degraded the PrPTSE as evidenced by decreased immunoreactivity and diminished ability to seed protein misfolding cyclic amplification reactions. Birnessite-mediated PrPTSE degradation increased as a solution's pH decreased, consistent with the pH-dependence of the redox potential of MnO2. Exposure to 5.6 mg MnO2 ml-1 (PrPTSE:MnO2=1 : 110) decreased PrPTSE levels by ???4 orders of magnitude. Manganese oxides may contribute to prion degradation in soil environments rich in these minerals. ?? 2009 SGM.

On the structural factors of soil humic matter related to soil water repellence in fire-affected soils

Science.gov (United States)

Almendros, G.; González-Vila, F. J.; González-Pérez, J. A.; Knicker, H.; De la Rosa, J. M.; Dettweiler, C.; Hernández, Z.

2012-04-01

In order to elucidate the impact of forest fires on physical and chemical properties of the soils as well as on the chemical composition of the soil organic matter, samples from two Mediterranean soils with contrasted characteristics and vegetation (O horizon, Lithic Leptosols under Quercus ilex and Pinus pinaster) and one agricultural soil (Ap horizon, Luvisol) were heated at 350 °C in laboratory conditions for three successive steps up to 600 s. The C- and N-depletion in the course of the heating showed small changes up to an oxidation time of 300 s. On the other side, and after 600 s, considerable C-losses (between 21% in the Luvisol and 50% in the Leptosols) were observed. The relatively low N-depletion ca. 4% (Luvisol) and 21% (Leptosol under pine) suggested preferential loss of C and the subsequent relative enrichment of nitrogen. Paralleling the progressive depletion of organic matter, the Leptosols showed a significant increase of both pH and electrical conductivity. The former change paralleled the rapid loss of carboxyl groups, whereas the latter point to the relative enrichment of ash with a bearing on the concentration of inorganic ions, which could be considered a positive effect for the post-fire vegetation. The quantitative and qualitative analyses by solid-state 13C NMR spectra of the humic fractions in the samples subjected to successive heating times indicate significant concentration of aromatic structures newly-formed in the course of the dehydration and cyclization of carbohydrates (accumulation of black carbon-type polycyclic aromatic structures), and probably lipids and peptides. The early decarboxylation, in addition to the depletion of O-alkyl hydrophilic constituents and further accumulation of secondary aromatic structures resulted in the dramatic increase in the soil water drop penetration time. It was confirmed that this enhancement of the soil hydrophobicity is not related to an increased concentration of soil free lipid, but is

Relating results from earthworm toxicity tests to agricultural soil

Science.gov (United States)

Beyer, W.N.; Greig-Smith, P.W.

1992-01-01

The artificial soil tests of the European Economic Community and of the Organization for Economic Cooperation produce data relating earthworm mortality to pesticide concentrations in soil under laboratory conditions. To apply these results to agricultural soils it is necessary to relate these concentrations to amounts of pesticide applied per area. This paper reviews the relevant published literature and suggests a simple relation for regulatory use. Hazards to earthworms from pesticides are suggested to be greatest soon after application, when the pesticides may be concentrated in a soil layer a few millimeters thick. For estimating exposure of earthworms, however, a thicker soil layer should be considered, to account for their movement through soil. During favorable weather conditions, earthworms belonging to species appropriate to the artificial soil test have been reported to confine their activity to a layer about 5 cm. If a 5-cm layer is accepted as relevant for regulatory purposes, then an application of 1 kg/ha would be equivalent to 1-67 ppm (dry) in the artificial soil test.

A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts.

Science.gov (United States)

Redmile-Gordon, M A; Armenise, E; White, R P; Hirsch, P R; Goulding, K W T

2013-12-01

Soil extracts usually contain large quantities of dissolved humified organic material, typically reflected by high polyphenolic content. Since polyphenols seriously confound quantification of extracted protein, minimising this interference is important to ensure measurements are representative. Although the Bradford colorimetric assay is used routinely in soil science for rapid quantification protein in soil-extracts, it has several limitations. We therefore investigated an alternative colorimetric technique based on the Lowry assay (frequently used to measure protein and humic substances as distinct pools in microbial biofilms). The accuracies of both the Bradford assay and a modified Lowry microplate method were compared in factorial combination. Protein was quantified in soil-extracts (extracted with citrate), including standard additions of model protein (BSA) and polyphenol (Sigma H1675-2). Using the Lowry microplate assay described, no interfering effects of citrate were detected even with concentrations up to 5 times greater than are typically used to extract soil protein. Moreover, the Bradford assay was found to be highly susceptible to two simultaneous and confounding artefacts: 1) the colour development due to added protein was greatly inhibited by polyphenol concentration, and 2) substantial colour development was caused directly by the polyphenol addition. In contrast, the Lowry method enabled distinction between colour development from protein and non-protein origin, providing a more accurate quantitative analysis. These results suggest that the modified-Lowry method is a more suitable measure of extract protein (defined by standard equivalents) because it is less confounded by the high polyphenolic content which is so typical of soil extracts.

Role of soil biology and soil functions in relation to land use intensity.

Science.gov (United States)

Bondi, Giulia; Wall, David; Bacher, Matthias; Emmet-Booth, Jeremy; Graça, Jessica; Marongiu, Irene; Creamer, Rachel

2017-04-01

The delivery of the ecosystem's functions is predominantly controlled by soil biology. The biology found in a gram of soil contains more than ten thousand individual species of bacteria and fungi (Torsvik et al., 1990). Understanding the role and the requirements of these organisms is essential for the protection and the sustainable use of soils. Soil biology represents the engine of all the processes occurring in the soil and it supports the ecosystem services such as: 1) nutrient mineralisation 2) plant production 3) water purification and regulation and 4) carbon cycling and storage. During the last years land management type and intensity have been identified as major drivers for microbial performance in soil. For this reason land management needs to be appropriately studied to understand the role of soil biology within this complex interplay of functions. We aimed to study whether and how land management drives soil biological processes and related functions. To reach this objective we built a land use intensity index (LUI) able to quantify the impact of the common farming practices carried out in Irish grassland soils. The LUI is derived from a detailed farmer questionnaire on grassland management practices at 38 farms distributed in the five major agro-climatic regions of Ireland defined by Holden and Brereton (2004). Soils were classified based on their drainage status according to the Irish Soil Information System by Creamer et al. (2014). This detailed questionnaire is then summarised into 3 management intensity components: (i) intensity of Fertilisation (Fi), (ii) frequency of Mowing (Mi) and (iii) intensity of Livestock Grazing (Gi). Sites were sampled to assess the impact of land management intensity on microbial community structure and enzyme behaviour in relation to nitrogen, phosphorus and carbon cycling. Preliminary results for enzymes linked to C and N cycles showed higher activity in relation to low grazing pressure (low Gi). Enzymes linked to P

Relative influence of soil chemistry and topography on soil available micronutrients by structural equation modeling

OpenAIRE

Zhu, Hongfen; Zhao, Ying; Nan, Feng; Duan, Yonghong; Bi, Rutian

2016-01-01

Soil chemical and topographic properties are two important factors influencing available micronutrient distribution of soil in the horizontal dimension. The objective of this study was to explore the relative influence of soil chemistry (including soil pH, soil organic matter, total nitrogen, available phosphorus, and available potassium) and topography (including elevation, slope, aspect, and wetness index) on the availability of micronutrients (Fe, Mn, Cu, Zn, and B) using structural equati...

Effects of biochar and Arbuscular mycorrhizae on bioavailability of potentially toxic elements in an aged contaminated soil

International Nuclear Information System (INIS)

Qiao, Yuhui; Crowley, David; Wang, Kun; Zhang, Huiqi; Li, Huafen

2015-01-01

Biochar pyrolyzed from corn stalks at 300 °C/500 °C and arbuscular mycorrhizae (AMF) were examined independently and in combination as possible treatments for soil remediation contaminated with Cd, Cr, Ni, Cu, Pb, Zn after 35 years following land application of sewage sludge in the 1970s. The results showed that biochar significantly decreased the heavy metal concentrations and their bioavailability for plants, and both biochars had similar such effects. AMF inoculation of corn plants had little effect on heavy metal bioavailability in either control or biochar amended soil, and no interaction between biochar and AMF was observed. Changes in DTPA extractable metals following biochar addition to soil were correlated with metal uptake by plants, whereas pore water metal concentrations were not predictive indicators. This research demonstrates positive benefits from biochar application for contaminated soil remediation, but remain ambiguous with regard to the benefits of simultaneous AMF inoculation on reduction of heavy metal bioavailability. - Highlights: • Biochar pyrolyzed from corn stalks at 300 °C/500 °C can increase the biomass of corn growing in a heavily contaminated soil. • Biochar could significantly decrease bioavailability of heavy metals (Cd, Cr, Ni, Cu, Zn) for plants. • Effects were not augmented by the addition of AMF although the production of glomalin is promoted by biochars. • AMF had not reduced bioavailability of PTEs, no significant interaction between biochar and AMF inoculation was observed. - Biochar could significantly decrease bioavailability of heavy metals (Cd, Cr, Ni, Cu, Zn) for plants, but AMF had little such effects, biochar and AMF interaction is not valid.

A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts

OpenAIRE

Redmile-Gordon, M.A.; Armenise, E.; White, R.P.; Hirsch, P.R.; Goulding, K.W.T.

2013-01-01

Soil extracts usually contain large quantities of dissolved humified organic material, typically reflected by high polyphenolic content. Since polyphenols seriously confound quantification of extracted protein, minimising this interference is important to ensure measurements are representative. Although the Bradford colorimetric assay is used routinely in soil science for rapid quantification protein in soil-extracts, it has several limitations. We therefore investigated an alternative colori...

Membrane proteins involved in transport, vesicle traffic and Ca(2+) signaling increase in beetroots grown in saline soils.

Science.gov (United States)

Lino, Bárbara; Chagolla, Alicia; E González de la Vara, Luis

2016-07-01

By separating plasma membrane proteins according to their hydropathy from beetroots grown in saline soils, several proteins probably involved in salt tolerance were identified by mass spectrometry. Beetroots, as a salt-tolerant crop, have developed mechanisms to cope with stresses associated with saline soils. To observe which plasma membrane (PM) proteins were more abundant in beet roots grown in saline soils, beet root plants were irrigated with water or 0.2 M NaCl. PM-enriched membrane preparations were obtained from these plants, and their proteins were separated according to their hydropathy by serial phase partitioning with Triton X-114. Some proteins whose abundance increased visibly in membranes from salt-grown beetroots were identified by mass spectrometry. Among them, there was a V-type H(+)-ATPase (probably from contaminating vacuolar membranes), which increased with salt at all stages of beetroots' development. Proteins involved in solute transport (an H(+)-transporting PPase and annexins), vesicle traffic (clathrin and synaptotagmins), signal perception and transduction (protein kinases and phospholipases, mostly involved in calcium signaling) and metabolism, appeared to increase in salt-grown beetroot PM-enriched membranes. These results suggest that PM and vacuolar proteins involved in transport, metabolism and signal transduction increase in beet roots adapted to saline soils. In addition, these results show that serial phase partitioning with Triton X-114 is a useful method to separate membrane proteins for their identification by mass spectrometry.

Traffic-related distribution of antimony in roadside soils.

Science.gov (United States)

Földi, Corinna; Sauermann, Simon; Dohrmann, Reiner; Mansfeldt, Tim

2018-06-01

Vehicular emissions have become one of the main source of pollution of urban soils; this highlights the need for more detailed research on various traffic-related emissions and related distribution patterns. Since the banning of asbestos in the European Union, its substitution with antimony (Sb) in brake linings has led to increased inputs of this toxic metalloid to environmental compartments. The objective of this study was to provide detailed information about the spatial distribution patterns of Sb and to assess its mobility and bioavailability. Roadside soils along an arterial road (approx. 9000 vehicles per day) in Cologne (Germany) were studied along five transects, at four soil depths and at seven sampling points set at varying distances from the road (n = 140). For all samples, comprehensive soil characterization was performed and inverse aqua regia-extractable trace metal content was determined being pseudo-total contents. Furthermore, for one transect, also total Sb and a chemical sequential extraction procedure was applied (n = 28). Pseudo-total Sb for all transects decreased significantly with soil depth and distance from the road, reflecting a distribution pattern similar to that of other trace metals associated with brake lining emissions. Conversely, metals associated with exhaust emissions showed a convex distribution. The geochemical fractionation of Sb revealed the following trends: i) non-specifically sorbed Sb was <5%; ii) specifically sorbed Sb was only detected within 1 m distance from the road and decreased with depth; iii) Sb associated with poorly-crystalline Fe oxides decreased with distance from the road; and iv) content of Sb bounded to well-crystalline Fe oxides, and Sb present in the residual fraction remained relatively constant at each depth. Consequently, roadside soils appear to inhibit brake lining-related Sb contamination, with significant but rather low ecotoxicological potential for input into surface and groundwater

Spectral estimation of soil properties in siberian tundra soils and relations with plant species composition

DEFF Research Database (Denmark)

Bartholomeus, Harm; Schaepman-Strub, Gabriela; Blok, Daan

2012-01-01

yields a good prediction model for K and a moderate model for pH. Using these models, soil properties are determined for a larger number of samples, and soil properties are related to plant species composition. This analysis shows that variation of soil properties is large within vegetation classes......Predicted global warming will be most pronounced in the Arctic and will severely affect permafrost environments. Due to its large spatial extent and large stocks of soil organic carbon, changes to organic matter decomposition rates and associated carbon fluxes in Arctic permafrost soils...

Exploring differences of soil quality as related to management in ...

African Journals Online (AJOL)

soil, vegetation and biodiversity) and productivity. Vegetation condition in contrasting land-use management systems is well documented in semiarid rangelands, but relatively little information is available on soil quality. This study explores soil ...

The alpha activity of soils in relation to landscape development

Energy Technology Data Exchange (ETDEWEB)

Pepper, R G; Quirk, J P [Western Australia Univ., Nedlands. Dept. of Soil Science and Plant Nutrition

1976-02-01

The alpha activity of soils and the degree of the equilibrium of the thorium series has been related to the age of soils developed on a truncated laterite landscape in southwestern Australia. The uplift of the old lateritic plateau has formed a sequence of erosional and depositional surfaces which form the parent materials of the present-day soils. These surfaces because of their different relative ages have been subjected to different degrees of weathering and leaching. The alpha activity of the soils formed on these different landscape surfaces is influenced firstly by the amount of weathering that the surface has undergone, and secondly by the degree of leaching that the soil has undergone as evidenced by profile development. It has been found that the younger soils have higher alpha activities with the thorium series tending more towards equilibrium when compared with older soils, where the alpha activity is lower due to the leaching of the daughter nuclides from the profile.

Radiocesium storage in soil microbial biomass of undisturbed alpine meadow soils and its relation to 137Cs soil-plant transfer

International Nuclear Information System (INIS)

Stemmer, Michael; Hromatka, Angelika; Lettner, Herbert; Strebl, Friederike

2005-01-01

This study focuses on radiocesium storage in soil microbial biomass of undisturbed alpine meadow sites and its relation to the soil-to-plant transfer. Soil and plant samples were taken in August 1999 from an altitude transect (800-1600 m.a.s.l.) at Gastein valley, Austria. Soil samples were subdivided into 3-cm layers for analyses of total, K 2 SO 4 -extractable and microbially stored 137 Cs. Microbial biomass was measured by the fumigation extraction method, and fungal biomass was quantified using ergosterol as biomarker molecule. In general, the quantity of 137 Cs stored in the living soil microbial biomass was relatively small. At the high-altitude meadows, showing high amounts of fungal biomass, microbially stored 137 Cs amounted to 0.64 ± 0.14 kBq m -2 which corresponds to about 1.2-2.7% of the total 137 Cs soil inventory. At lower altitudes, microbial 137 Cs content was distinctly smaller and in most cases not measurable at all using the fumigation extraction method. However, a positive correlation between the observed soil-to-plant aggregated transfer factor, microbially stored 137 Cs and fungal biomass was found, which indicates a possible role of fungal biomass in the storage and turnover of 137 Cs in soils and in the 137 Cs uptake by plants

Soil Microbes and soil microbial proteins: interactions with clay minerals

International Nuclear Information System (INIS)

Spence, A.; Kelleher, B. P.

2009-01-01

Bacterial enumeration in soil environments estimates that the population may reach approximately 10 1 0 g - 1 of soil and comprise up to 90% of the total soil microbial biomass. Bacteria are present in soils as single cells or multicell colonies and often strongly adsorb onto mineral surfaces such as sand and clay. The interactions of microbes and microbial biomolecules with these minerals have profound impacts on the physical, chemical and biological properties of soils. (Author)

Anaerobic N mineralization in paddy soils in relation to inundation management, physicochemical soil fractions, mineralogy and soil properties

Science.gov (United States)

Sleutel, Steven; Kader, Mohammed Abdul; Ara Begum, Shamim; De Neve, Stefaan

2013-04-01

Anaerobic N mineralization measured from (saturated) repacked soil cores from 25 paddy fields in Bangladesh and was previously found to negatively related to soil N content on a relative basis. This suggests that other factors like soil organic matter (SOM) quality or abiotic factors instead control the anaerobic N mineralization process. We therefore assessed different physical and chemical fractions of SOM, management factors and various soil properties as predictors for the net anaerobic N mineralization. 1° First, we assessed routinely analyzed soil parameters (soil N and soil organic carbon, texture, pH, oxalate- and pyrophosphate-extractable Fe, Al, and Mn, fixed-NH4 content). We found no significant influences of neither soil mineralogy nor the annual length of inundation on soil N mineralization. The anaerobic N mineralization correlated positively with Na-pyrophosphate-extractable Fe and negatively with pH (both at Presistant OM fraction, followed by extraction of mineral bound OM with 10%HF thereby isolating the HF-resistant OM. None of the physicochemical SOM fractions were found useful predictors anaerobic N mineralization. The linkage between these chemical soil N fractions and N supplying processes actually occurring in the soil thus appears to be weak. Regardless, we hypothesize that variation in strength of N-mineral and N-OM linkages is likely to explain variation in bio-availability of organic N and proneness to mineralization. Yet, in order to separate kinetically different soil N fractions we then postulated that an alternative approach would be required, which instead isolates soil N fractions on the basis of bonding strength. In this respect bonding strength should be seen as opposite of proneness to dissolution of released N into water, the habitat of soil microorganisms mediating soil N mineralization. We hypothesize that soil N extracted by water at increasing temperatures would reflect such N fractions with increasing bonding strength, in

Assessment of heavy metal bioavailability in contaminated sediments and soils using green fluorescent protein-based bacterial biosensors

International Nuclear Information System (INIS)

Liao, V.H.-C.; Chien, M.-T.; Tseng, Y.-Y.; Ou, K.-L.

2006-01-01

A green fluorescent protein (GFP)-based bacterial biosensor Escherichia coli DH5α (pVLCD1) was developed based on the expression of gfp under the control of the cad promoter and the cadC gene of Staphylococcus aureus plasmid pI258. DH5α (pVLCD1) mainly responded to Cd(II), Pb(II), and Sb(III), the lowest detectable concentrations being 0.1 nmol L -1 , 10 nmol L -1 , and 0.1 nmol L -1 , respectively, with 2 h exposure. The biosensor was field-tested to measure the relative bioavailability of the heavy metals in contaminated sediments and soil samples. The results showed that the majority of heavy metals remained adsorbed to soil particles: Cd(II)/Pb(II) was only partially available to the biosensor in soil-water extracts. Our results demonstrate that the GFP-based bacterial biosensor is useful and applicable in determining the bioavailability of heavy metals with high sensitivity in contaminated sediment and soil samples and suggests a potential for its inexpensive application in environmentally relevant sample tests. - Nonpathogenic GFP-based bacterial biosensor is applicable in determining the bioavailability of heavy metals in environmental samples

Soil fauna and its relation with environmental variables in soil management systems

Directory of Open Access Journals (Sweden)

Dilmar Baretta

Full Text Available The present study aims to generate knowledge about the soil fauna, its relation to other explanatory environmental variables, and, besides it, to select edaphic indicators that more contribute to separate the land use systems (LUS. Five different LUS were chosen: conventional tillage with crop rotation (CTCR; no-tillage with crop rotation (NTCR; conventional tillage with crop succession (CTCS; no-tillage with crop succession (NTCS and minimum tillage with crop succession (MTCS. The samples were made in the counties Chapecó, Xanxerê and Ouro Verde located in the state of Santa Catarina, Brazil, and were considered the true replicates of the LUS. In each site, nine points were sampled in a sampling grid of 3 x 3. At the same points, soil was sampled for the physical, chemical and biological attributes (environmental variables. Pitfall traps were used to evaluate the soil fauna. Data were analyzed using principal component analysis (PCA and canonical discriminant analysis (CDA. The soil fauna presented potential to be used as indictors of soil quality, since some groups proved to be sensible to changes of the environmental variables and to soil management and tillage. The soil management using crop rotation (NTCR and CTCR presented higher diversity, compared to the systems using crop succession (NTCS, MTCS and NTCS, evidencing the importance of the soil tillage, independent of the season (summer or winter. The variable that better contributed to explain these changes were the chemical variables (potassium, pH, calcium, organic matter, available phosphorus, potential acidity, and biological variables (Shannon diversity index, Collembola, Pielou equitability index and microbial biomass carbon, respectively.

Toxic effects of di(2-ethylhexyl)phthalate on mortality, growth, reproduction and stress-related gene expression in the soil nematode Caenorhabditis elegans.

Science.gov (United States)

Roh, Ji-Yeon; Jung, In-Ho; Lee, Jai-Young; Choi, Jinhee

2007-07-31

In this study, di(2-ethylhexyl)phthalate (DEHP) toxicities to Caenorhabditis elegans were investigated using multiple toxic endpoints, such as mortality, growth, reproduction and stress-related gene expression, focusing on the identification of chemical-induced gene expression as a sensitive biomarker for DEHP monitoring. The possible use of C. elegans as a sentinel organism in the monitoring of soil ecosystem health was also tested by conducting the experiment on the exposure of nematode to field soil. Twenty-four-hour median lethal concentration (LC50) data suggest that DEHP has a relatively high potential of acute toxicity to C. elegans. Decreases in body length and egg number per worm observed after 24h of DEHP exposure may induce long-term alteration in the growth and reproduction of the nematode population. Based on the result from the C. elegans genome array and indicated in the literatures, stress proteins, metallothionein, vitellogenin, xenobiotic metabolism enzymes, apoptosis-related proteins, and antioxidant enzyme genes were selected as stress-related genes and their expression in C. elegans by DEHP exposure was analyzed semi-quantitatively. Expression of heat shock protein (hsp)-16.1 and hsp-16.2 genes was decreased by DEHP exposure. Expression of cytochrome P450 (cyp) 35a2 and glutathione-S-transferease (gst)-4, phase I and phase II of xenobiotic metabolism enzymes, was increased by DEHP exposure in a concentration-dependent manner. An increase in stress-related gene expressions occurred concomitantly with the deterioration on the physiological level, which suggests an increase in expression of those genes may not be considered as a homeostatic response but as a toxicity that might have physiological consequences. The experiment with the soil from the landfill site suggests that the potential of the C. elegans biomarker identified in laboratory conditions should be calibrated and validated for its use in situ.

iSOIL: Interactions between soil related sciences - Linking geophysics, soil science and digital soil mapping

Science.gov (United States)

Dietrich, Peter; Werban, Ulrike; Sauer, Uta

2010-05-01

High-resolution soil property maps are one major prerequisite for the specific protection of soil functions and restoration of degraded soils as well as sustainable land use, water and environmental management. To generate such maps the combination of digital soil mapping approaches and remote as well as proximal soil sensing techniques is most promising. However, a feasible and reliable combination of these technologies for the investigation of large areas (e.g. catchments and landscapes) and the assessment of soil degradation threats is missing. Furthermore, there is insufficient dissemination of knowledge on digital soil mapping and proximal soil sensing in the scientific community, to relevant authorities as well as prospective users. As one consequence there is inadequate standardization of techniques. At the poster we present the EU collaborative project iSOIL within the 7th framework program of the European Commission. iSOIL focuses on improving fast and reliable mapping methods of soil properties, soil functions and soil degradation risks. This requires the improvement and integration of advanced soil sampling approaches, geophysical and spectroscopic measuring techniques, as well as pedometric and pedophysical approaches. The focus of the iSOIL project is to develop new and to improve existing strategies and innovative methods for generating accurate, high resolution soil property maps. At the same time the developments will reduce costs compared to traditional soil mapping. ISOIL tackles the challenges by the integration of three major components: (i)high resolution, non-destructive geophysical (e.g. Electromagnetic Induction EMI; Ground Penetrating Radar, GPR; magnetics, seismics) and spectroscopic (e.g., Near Surface Infrared, NIR) methods, (ii)Concepts of Digital Soil Mapping (DSM) and pedometrics as well as (iii)optimized soil sampling with respect to profound soil scientific and (geo)statistical strategies. A special focus of iSOIL lies on the

Soil-plant relation in Cuban sugar cane by instrumental neutron activation analysis

International Nuclear Information System (INIS)

Diaz Riso, O.; Griffith Martinez, J.

1996-01-01

This paper shows the result of soil-plant relation in samples from Cuban sugar canes of different soil types and cane varieties, using the INAA from thermal reactor. The behaviour of minor and trace elements in sugar cane leaves is uniform and independent of sugar cane variety or type of soil. The soil-plant relation shows four principal groups of micro elements, according to their absorption by the plant

In situ subsoil stress-strain behaviour in relation to soil precompression stress

DEFF Research Database (Denmark)

Keller, T; Arvidsson, J; Schjønning, Per

2012-01-01

is assumed to be elastic and reversible as long as [sigma] work examined soil stress-strain behavior as measured in situ during wheeling experiments and related it to the stress-strain behavior and [sigma]pc measured on soil cores in uniaxial compression tests in the laboratory. The data......Soil compaction negatively influences many important soil functions, including crop growth. Compaction occurs when the applied stress, [sigma], overcomes the soil strength. Soil strength in relation to compaction is typically expressed by the soil precompression stress, [sigma]pc. Deformation...... analyzed were from a large number of wheeling experiments carried out in Sweden and Denmark on soils with a wide range of texture. Contradicting the concept of precompression stress, we observed residual strain, [Latin Small Letter Open E]res, at [sigma

International approach to assessing soil quality by ecologically-related biological parameters

OpenAIRE

Filip, Z.

2002-01-01

Metadata only record Soil quality represents an integral value of the compositional structures and natural functions of soil in relation to soil use and environmental conditions on site. Among the indigenous soil components, different organisms and especially microorganisms play a key role in ecologically important biogeochemical processes. In that way, soil microorganisms contribute to the maintenance of the matter and energy transfer in terrestrial environments. Under stress conditions c...

Lack of A-factor production induces the expression of nutrient scavenging and stress-related proteins in Streptomyces griseus.

Science.gov (United States)

Birkó, Zsuzsanna; Swiatek, Magdalena; Szájli, Emília; Medzihradszky, Katalin F; Vijgenboom, Erik; Penyige, András; Keseru, Judit; van Wezel, Gilles P; Biró, Sándor

2009-10-01

The small gamma-butyrolactone A-factor is an important autoregulatory signaling molecule for the soil-inhabiting streptomycetes. Starvation is a major trigger for development, and nutrients are provided by degradation of the vegetative mycelium via a process of programmed cell death, reusing proteins, nucleic acids, and cell wall material. The A-factor regulon includes many extracellular hydrolases. Here we show via proteomics analysis that many nutrient-scavenging and stress-related proteins were overexpressed in an A-factor non-producing mutant of Streptomyces griseus B-2682. Transcript analysis showed that this is primarily due to differential transcription of the target genes during early development. The targets include proteins relating to nutrient stress and environmental stress and an orthologue of the Bacillus sporulation control protein Spo0M. The enhanced expression of these proteins underlines the stress that is generated by the absence of A-factor. Wild-type developmental gene expression was restored to the A-factor non-producing mutant by the signaling protein Factor C in line with our earlier observation that Factor C triggers A-factor production.

Effects of solution chemistry and aging time on prion protein adsorption and replication of soil-bound prions.

Directory of Open Access Journals (Sweden)

Samuel E Saunders

2011-04-01

Full Text Available Prion interactions with soil may play an important role in the transmission of chronic wasting disease (CWD and scrapie. Prions are known to bind to a wide range of soil surfaces, but the effects of adsorption solution chemistry and long-term soil binding on prion fate and transmission risk are unknown. We investigated HY TME prion protein (PrP(Sc adsorption to soil minerals in aqueous solutions of phosphate buffered saline (PBS, sodium chloride, calcium chloride, and deionized water using western blotting. The replication efficiency of bound prions following adsorption in these solutions was also evaluated by protein misfolding cyclic amplification (PMCA. Aging studies investigated PrP(Sc desorption and replication efficiency up to one year following adsorption in PBS or DI water. Results indicate that adsorption solution chemistry can affect subsequent prion replication or desorption ability, especially after incubation periods of 30 d or longer. Observed effects were minor over the short-term (7 d or less. Results of long-term aging experiments demonstrate that unbound prions or prions bound to a diverse range of soil surfaces can readily replicate after one year. Our results suggest that while prion-soil interactions can vary with solution chemistry, prions bound to soil could remain a risk for transmitting prion diseases after months in the environment.

Existing Versus Added Soil Organic Matter in Relation to Phosphorus Availability on Lateritic Soils

Directory of Open Access Journals (Sweden)

Fadly Hairannoor Yusran

2008-01-01

Full Text Available Lateritic soils (Ultisols and Oxisols are commonly characterised by high phosphate sorbing capacity due to the type of clay and present high content of aluminium (Al and iron (Fe oxides. Addition of fresh organic matter (OM may contribute to management of these soils by releasing more bicarbonate-extractable phosphorus (BP through organic phosphorus (OP transformation, or by the soluble component of OM additions desorbing phosphate by ligand exchange. It is not known, however, whether BP results solely from addition of new OM (by either mineralisation or desorption or from transformation of inherent or pre-existing in soil. We considered that removing the existing soil OM and replacing it with an equivalent amount of new OM may help to resolve this issue, especially with respect to P transformation after OM additions. Three lateritic soils of Western Australia (including a deep regolith material with very low inherent soil OM (SOM were used, and sub-samples of the three soils were combusted (450° C to obtain soils effectively free from existing OM. A further sub-sample of the soils was not combusted. Both soil groups, receiving the same amount of organic carbon (OC, from 80 ton ha-1 biomass + soil OM or biomass equal to soil OM from peat, wheat straw (Triticum aestivum L. and lucerne hay (Medicago sativa L., were incubated for nine months. Soil bicarbonate-extractable P as well as non-extractable P (NP, measured as Total-P (TP-BP increased due to new OM application in the order lucerne hay>peat>wheat straw. The correlation between BP with soil organic carbon (SOC became more positive over time. Microbial biomass phosphorus (MBP was not well correlated with the increase of NP content and phosphatase was not related to the increase in BP. Overall, freshly applied (new OM not only contributed to the increased level of P compared with the existing OM treatment.

Integrated assessment of space, time, and management-related variability of soil hydraulic properties

Energy Technology Data Exchange (ETDEWEB)

Es, H.M. van; Ogden, C.B.; Hill, R.L.; Schindelbeck, R.R.; Tsegaye, T.

1999-12-01

Computer-based models that simulate soil hydrologic processes and their impacts on crop growth and contaminant transport depend on accurate characterization of soil hydraulic properties. Soil hydraulic properties have numerous sources of variability related to spatial, temporal, and management-related processes. Soil type is considered to be the dominant source of variability, and parameterization is typically based on soil survey databases. This study evaluated the relative significance of other sources of variability: spatial and temporal at multiple scales, and management-related factors. Identical field experiments were conducted for 3 yr. at two sites in New York on clay loam and silt loam soils, and at two sites in Maryland on silt loam and sandy loam soils, all involving replicated plots with plow-till and no-till treatments. Infiltrability was determined from 2054 measurements using parameters, and Campbell's a and b parameters were determined based on water-retention data from 875 soil cores. Variance component analysis showed that differences among the sites were the most important source of variability for a (coefficient of variation, CV = 44%) and b (CV = 23%). Tillage practices were the most important source of variability for infiltrability (CV = 10%). For all properties, temporal variability was more significant than field-scale spatial variability. Temporal and tillage effects were more significant for the medium- and fine-textured soils, and correlated to initial soil water conditions. The parameterization of soil hydraulic properties solely based on soil type may not be appropriate for agricultural lands since soil-management factors are more significant. Sampling procedures should give adequate recognition to soil-management and temporal processes at significant sources of variability to avoid biased results.

Parathyroid hormone-related protein blood test

Science.gov (United States)

... ency/article/003691.htm Parathyroid hormone-related protein blood test To use the sharing features on this page, ... measures the level of a hormone in the blood, called parathyroid hormone-related protein. How the Test is Performed A blood sample is needed . How ...

soil groups relative susceptibility to erosion in parts of south-eastern

African Journals Online (AJOL)

Dr Obe

erosion by water determined based on the amount of soil lost during the various runs. Based on ... knowledge of the many factors of soil erosion .... Table 4: Relative erodibility levels of soil groups in lmo and Abia States under 'wet' conditions. Moderately Erodible. Highly Erodible. Very Highly Erodible. 1. Type Dystropepts.

SOIL Geo-Wiki: A tool for improving soil information

Science.gov (United States)

Skalský, Rastislav; Balkovic, Juraj; Fritz, Steffen; See, Linda; van der Velde, Marijn; Obersteiner, Michael

2014-05-01

Crowdsourcing is increasingly being used as a way of collecting data for scientific research, e.g. species identification, classification of galaxies and unravelling of protein structures. The WorldSoilProfiles.org database at ISRIC is a global collection of soil profiles, which have been 'crowdsourced' from experts. This system, however, requires contributors to have a priori knowledge about soils. Yet many soil parameters can be observed in the field without specific knowledge or equipment such as stone content, soil depth or color. By crowdsourcing this information over thousands of locations, the uncertainty in current soil datasets could be radically reduced, particularly in areas currently without information or where multiple interpretations are possible from different existing soil maps. Improved information on soils could benefit many research fields and applications. Better soil data could enhance assessments of soil ecosystem services (e.g. soil carbon storage) and facilitate improved process-based ecosystem modeling from local to global scales. Geo-Wiki is a crowdsourcing tool that was developed at IIASA for land cover validation using satellite imagery. Several branches are now available focused on specific aspects of land cover validation, e.g. validating cropland extent or urbanized areas. Geo-Wiki Pictures is a smart phone application for collecting land cover related information on the ground. The extension of Geo-Wiki to a mobile environment provides a tool for experts in land cover validation but is also a way of reaching the general public in the validation of land cover. Here we propose a Soil Geo-Wiki tool that builds on the existing functionality of the Geo-Wiki application, which will be largely designed for the collection and sharing of soil information. Two distinct applications are envisaged: an expert-oriented application mainly for scientific purposes, which will use soil science related language (e.g. WRB or any other global reference

DEVELOPMENT OF ACID-SOIL TOLERANT CORN (Zea mays L. WITH HIGH-QUALITY PROTEIN

Directory of Open Access Journals (Sweden)

E.S. Halimi

2011-06-01

Full Text Available Corn is an important food crop in Indonesia. Plant expansion has been hampered by soil-acidity problem and the protein content of many corn varieties was low. This research initiates development of soil-acid-tolerant corn with high-quality-protein content. Research was done on 12 factorial treatments and 3 replications as blocks in RCBD. The first factor was corn populations: Toray-1(G1, Toray-2(G2, GS-5(G3 and GS-10(G4. The second factor was fertilizations: P1(69 kg N+36 kg P2O5+15 kg K2O per ha; P2(115 kg N+54 kg P2O5+30 kg K2O per ha; and P3(161 kg N+72 kg P2O5+45 kg K2O per ha. The observed variables consisted of several agronomic traits, including the protein content. Results indicated that the corn populations, in general, showed good agronomic traits. The differences were mostly between populations, not between fertilizations, and no interaction was observed. The yield potential ranged from 4.25 to 6.47 ton dry seeds per ha. The protein content of seed resulted from cross ranged from 9.84% to 11.30%, as compared to the parents of 9.11% and 12.62%. This research concludes that genetic factors play an important role as confirmed by heritability estimate (h2=0.75.

Lodgepole pine site index in relation to synoptic measures of climate, soil moisture and soil nutrients.

Science.gov (United States)

G. Geoff Wang; Shongming Huang; Robert A. Monserud; Ryan J. Klos

2004-01-01

Lodgepole pine site index was examined in relation to synoptic measures of topography, soil moisture, and soil nutrients in Alberta. Data came from 214 lodgepole pine-dominated stands sampled as a part of the provincial permanent sample plot program. Spatial location (elevation, latitude, and longitude) and natural subregions (NSRs) were topographic variables that...

Effects of Soil Water Deficit on Insecticidal Protein Expression in Boll Shells of Transgenic Bt Cotton and the Mechanism

Directory of Open Access Journals (Sweden)

Xiang Zhang

2017-12-01

Full Text Available This study was conducted to investigate the effects of soil water deficit on insecticidal protein expression in boll shells of cotton transgenic for a Bt gene. In 2014, Bt cotton cultivars Sikang 1 (a conventional cultivar and Sikang 3 (a hybrid cultivar were planted in pots and five soil water content treatments were imposed at peak boll stage: 15% (G1, 35% (G2, 40% (G3, 60% (G4, and 75% field capacity (CK, respectively. Four treatments (G2, G3, G4, and CK were repeated in 2015 in the field. Results showed that the insecticidal protein content of boll shells decreased with increasing water deficit. Compared with CK, boll shell insecticidal protein content decreased significantly when soil water content was below 60% of maximum water holding capacity for Sikang 1 and Sikang 3. However, increased Bt gene expression was observed when boll shell insecticidal protein content was significantly reduced. Activity assays of key enzymes in nitrogen metabolism showed that boll shell protease and peptidase increased but nitrogen reductase and glutamic-pyruvic transaminase (GPT decreased. Insecticidal protein content exhibited significant positive correlation with nitrogen reductase and GPT activities; and significant negative correlation with protease and peptidase activities. These findings suggest that the decrease of insecticidal protein content associated with increasing water deficit was a net result of decreased synthesis and increased decomposition.

Protein function prediction using neighbor relativity in protein-protein interaction network.

Science.gov (United States)

Moosavi, Sobhan; Rahgozar, Masoud; Rahimi, Amir

2013-04-01

There is a large gap between the number of discovered proteins and the number of functionally annotated ones. Due to the high cost of determining protein function by wet-lab research, function prediction has become a major task for computational biology and bioinformatics. Some researches utilize the proteins interaction information to predict function for un-annotated proteins. In this paper, we propose a novel approach called "Neighbor Relativity Coefficient" (NRC) based on interaction network topology which estimates the functional similarity between two proteins. NRC is calculated for each pair of proteins based on their graph-based features including distance, common neighbors and the number of paths between them. In order to ascribe function to an un-annotated protein, NRC estimates a weight for each neighbor to transfer its annotation to the unknown protein. Finally, the unknown protein will be annotated by the top score transferred functions. We also investigate the effect of using different coefficients for various types of functions. The proposed method has been evaluated on Saccharomyces cerevisiae and Homo sapiens interaction networks. The performance analysis demonstrates that NRC yields better results in comparison with previous protein function prediction approaches that utilize interaction network. Copyright © 2012 Elsevier Ltd. All rights reserved.

Water-stability of soil aggregates in relation to selected properties

International Nuclear Information System (INIS)

Mbagwu, J.S.C.; Bazzoffi, P.; Unamba Oparah, I.

1995-03-01

The stability of soil aggregates in water is an important soil physical property for evaluating the potential of agricultural soils to erode and elucidating the mechanisms of soil erosion. In this study we used aggregates from 15 surface soil samples in Italy to evaluate the influence of intrinsic soil physical, chemical and mineralogical properties on aggregates stability (AS). The aim was to develop a model for predicting AS from a subset of these soil properties. The index of stability used is the mean-weight diameter of water-stable aggregates (MWD). The model developed with soil physical properties alone explained just 42% of variance in MWD and predicted AS in only 20% of test soils. The model developed with mineralogical properties alone explained 70% of variance in MWD and predicted AS in 60% of the test soils. The chemical properties - based model explained 90% of variance in MWD and predicted AS in 80% of the test soils. The best-fit model was developed with soil properties from the physical, chemical and mineralogical subsets. It explained 98% of variance in MWD and predicted AS in 100% of the test soils. This model shows that the most important soil properties which influence the AS of these soils include ratio of total sand to clay, concentrations of iron oxide, magnesium oxide, organic matter, silica/alumina ratio, chlorite, feldspar and muscovite. This indicates that fairly good estimates of the relative stability of these aggregates in water and hence of their potential to erode, requires a knowledge of the physico-chemical and mineralogical properties. (author). 40 refs, 4 tabs

Performance of neutron scattering relative to Diviner2000 for estimating soil water content in salt affected soils

International Nuclear Information System (INIS)

Al-Ain, F.; Attar, J.; Hussein, F.

2007-05-01

A field experiment was conducted on sandy clay and clayey soils at Deir Ezzor to compare the performance of Neutron Scattering (NS) relative to a capacitance probe (CP), Diviner2000, in our local conditions under saline soils. The effect of soil electrical conductivity (ECe) and bulk density (?b) on the precession, accuracy and sensitivity of the tested equipment s were evaluated. Also, the ability to improve the calibration equation for these equipment s, by including ECe and ?b as independent variables in the equation formula, was studied. The study showed that, Diviner2000 was very sensitive to soil bulk density and electrical conductivity of the soil (i.e. soil salinity) compared to the NS. Multiple non-linear regressions improved the fitting when both parameters (?b and ECe) were included in the equation, even though the correlation coefficient (R2) remained low in the case of Diviner2000.(author)

Programmed survival of soil bacteria

DEFF Research Database (Denmark)

Jensen, Lars Bogø; Molin, Søren; Sternberg, Claus

Biological containment systems have been developed for Pseudomonas putida and related soil bacteria. The systems are based on combinations of lethal genes and regulated gene expression. Two types of killing function have been employed: 1) A membrane protein interfering with the membrane potential...

Micronutrient Availability in Relation to Selected Soil Properties and landscape Position in Calcareous Soils of Golpayegan

Directory of Open Access Journals (Sweden)

Mojtaba Fathi

2017-02-01

Full Text Available Introduction: Variety of soil reactions govern the distribution of metal micronutrients that includes complexation with organic and inorganic ligands, ion exchange, adsorption and desorption processes, precipitation and dissolution of solids and acid-based equilibria. The relative importance of these reactions depends on many factors such as soil physical, chemical, and mineralogical properties and the nature of metal ions. Environmental factors such as climate, physiographic position, and soil development may affect variability of some soil properties and thereby nutrient availability. The present research was conducted to find relationships between Iron, manganese, zinc, and copper availability and some major soil properties, physiographic condition and soil development. Materials and Methods: Golpayegan region is located in northwest of Isfahan province in central Iran. The mean elevation of the studied area is 1790 above sea level. Annual precipitation was about 244mm and mean monthly temperature ranges from -6 in January to 34°C in August. The soils were developed on different physiographic conditions including piedmont plains, alluvial-fan, plateaus, and flood plains belonging to Entisols and Aridisols. Soil samples (0–60 cm were collected from 98 grid points with 2000m distance in the agricultural area of Golpayegan. Particle size distribution, calcium carbonate, organic carbon, available potassium and phosphorus of the soils were measured by SWRI standard methods. Available Zn, Cu, Mn, and Fe were determined by addition of 10 g soil to 20mL 0.005M diethylentriaminepentacetic‏. The solutions were shaken for 2 h at 25°C, centrifuged, filtered, and Fe, Mn, Zn, and Cu concentrations were measured by an atomic absorption spectrophotometer. Results Discussion: Studied soils were developed on calcareous material and about 60% of samples have more than 20% of calcium carbonate. Available Fe ranged from 1.4 to 6.5 mg kg-1 (mean 15.8 mg kg-1

Fate of airborne metal pollution in soils as related to agricultural management. 1. Zn and Pb distributions in soil profiles

NARCIS (Netherlands)

Fernandez, C.; Labanowski, J.; Cambier, P.; Jongmans, A.G.; Oort, van F.

2007-01-01

The fate of airborne metal pollutants in soils is still relatively unknown. We studied the incorporation of such airborne metal pollution in two soils under long-term permanent pasture (PP) and conventional arable land (CA). Both soils were located at an almost equal distance from a former zinc

Computer Aided Design for Soil Classification Relational Database ...

African Journals Online (AJOL)

unique firstlady

engineering, several developers were asked what rules they applied to identify ... classification is actually a part of all good science. As Michalski ... by a large number of soil scientists. .... and use. The calculus relational database processing is.

Phosphorus sorption in relation to soil grain size and geochemical ...

African Journals Online (AJOL)

By using stepwise regression, the combination of Al, Fe, clay and Ca predicted more than 94% of the variation in the P sorption capacity of soils samples from Simiyu and Kagera basins. These four soil properties, which are strongly related to P sorption, could therefore be used as quick tests for predicting the P sorption ...

Some geomedical problems in relation to soil science

International Nuclear Information System (INIS)

Laag, J.

1988-01-01

Geomedicine may be defined as the science dealing with the influence of ordinary environmental factors on geographical distribution of health problems in man and animals. An important group of geomedical problems is connected to nutrition. These problems may either be caused by deficiency or surplus of certain matters. Many questions concerning the pollution of nature are classified under the latter group Radioactive pollutants are regarded as important special occurrences under this group. In order to be able to solve complicated geomedical problems, knowledge is needed on the circulation processes rocks-soils-water-plants-animals-man, and waste products back to the soils. The registration of locations of different radioactive elements can give basic material for special geomedical conclusions. Many chemical reactions in which radioactive matter are involved, depend on properties of the soils. Humus and clay minerals have, generally speaking, a high capacity for the absorbtion of soluble matter, but great variations occur. The reactions of radioactive isotopes supplied from the atmosphere, depend on properties of the soil. Radioactive substances are leached relatively rapidly from a soil with low absorption capacity, and may thus be taken away from the circulation in which terrestrial plants, animals and man take part. If the substances is strongly absorbed (fixed), they can also to some extent be withdrawn from the circulation processes

Daily changes of radon concentration in soil gas under influence of atmospheric factors: room temperature, soil surface temperature and relative humidity

International Nuclear Information System (INIS)

Lara, Evelise G.; Oliveira, Arno Heeren de

2015-01-01

This work aims at relating the daily change in the radon concentration in soil gas in a Red Yellow Acrisol (SiBCS) under influence of atmospheric factors: room temperature, soil surface temperature and relative humidity. The 226 Ra, 232 Th, U content and permeability were also performed. The measurements of radon soil gas were carried out by using an AlphaGUARD monitor. The 226 Ra activity concentration was made by Gamma Spectrometry (HPGe); the permeability was carried out using the RADON-JOK permeameter and ICP-MS analysis to 232 Th and U content. The soil permeability is 5.0 x 10 -12 , which is considered average. The 226 Ra (22.2 ± 0.3 Bq.m -3 ); U content (73.4 ± 3.6 Bq.kg -1 ) and 232 Th content (55.3 ± 4.0 Bq.kg -1 ) were considered above of average concentrations, according to mean values for soils typical (~ 35.0 Bq.kg -1 ) by UNSCEAR. The results showed a difference of 26.0% between the highest and the lowest concentration of radon in soil gas: at midnight (15.5 ± 1.0 kBq.m -3 ) and 3:00 pm, the highest mean radon concentration (21.0 ± 1.0 kBq.m -3 ). The room temperature and surface soil temperature showed equivalent behavior and the surface soil temperature slightly below room temperature during the entire monitoring time. Nevertheless, the relative humidity showed the highest cyclical behavior, showing a higher relationship with the radon concentration in soil gas. (author)

Abiotic Protein Fragmentation by Manganese Oxide: Implications for a Mechanism to Supply Soil Biota with Oligopeptides.

Science.gov (United States)

Reardon, Patrick N; Chacon, Stephany S; Walter, Eric D; Bowden, Mark E; Washton, Nancy M; Kleber, Markus

2016-04-05

The ability of plants and microorganisms to take up organic nitrogen in the form of free amino acids and oligopeptides has received increasing attention over the last two decades, yet the mechanisms for the formation of such compounds in soil environments remain poorly understood. We used Nuclear Magnetic Resonance (NMR) and Electron Paramagnetic Resonance (EPR) spectroscopies to distinguish the reaction of a model protein with a pedogenic oxide (Birnessite, MnO2) from its response to a phyllosilicate (Kaolinite). Our data demonstrate that birnessite fragments the model protein while kaolinite does not, resulting in soluble peptides that would be available to soil biota and confirming the existence of an abiotic pathway for the formation of organic nitrogen compounds for direct uptake by plants and microorganisms. The absence of reduced Mn(II) in the solution suggests that birnessite acts as a catalyst rather than an oxidant in this reaction. NMR and EPR spectroscopies are shown to be valuable tools to observe these reactions and capture the extent of protein transformation together with the extent of mineral response.

Comparison of mouse and swine bioassays for determination of soil arsenic relative bioavailability

Science.gov (United States)

Evaluation of soil arsenic (As) relative bioavailability (RBA) is essential to accurately assess human exposure to As contaminated soils via the incidental ingestion pathway. A variety of animal bioassays have been developed to estimate As RBA in contaminated soils and dusts, wit...

Heavy metals content in degraded agricultural soils of a mountain region related to soil properties

Science.gov (United States)

Navarro-Pedreño, José; Belén Almendro-Candel, María; Gómez, Ignacio; Jordán, Manuel M.; Bech, Jaume; Zorpas, Antonis

2017-04-01

Agriculture has been practiced for long time in Mediterranean regions. Intensive agriculture and irrigation have developed mainly in the valleys and coastal areas. In the mountainous areas, dry farming has been practiced for centuries. Soils have been fertilized using mainly organic amendments. Plants extracted nutrients and other elements like heavy metals presented in soils and agricultural practices modified soil properties that could favor the presence of heavy metals. In this work, it has been checked the content of heavy metals in 100 agricultural soils samples of the NorthWest area of the province of Alicante (Spain) which has been long cultivated with cereals and olive trees, and now soils are abandoned and degraded because of the low agricultural yields. European policy has the aim to improve the sustainable agriculture and recover landscapes of mountain regions. So that, it is important to check the state of the soils (Marques et al. 2007). Soils samples (arable layer) were analyzed determining: pH (1:5, w/v, water extract), equivalent calcium carbonate content, organic matter by Walkley-Black method (Nelson and Sommers 1996), micronutrients (Cu, Fe, Mn, Zn) extracted with DTPA (Lindsay and Norvell, 1978) and measured by atomic absorption spectrometry, and total content of metals (Cd, Cr, Ni, Pb) measured in soil samples after microwave acid digestion (Moral et al. 1996), quantifying the content of metals by ICP analysis. The correlation between soil properties and metals. The results indicated that pH and carbonates are the most important properties of these soils correlated with the metals (both micronutrients and heavy metals). The available micronutrients (all of them) are close correlated with the pH and carbonates in soils. Moreover, heavy metals like Pb and Ni are related to available Mn and Zn. Keywords: pH, carbonates, heavy metals, abandoned soils. References: Lindsay,W.L., andW.A. Norvell. 1978. "Development of a DTPA Soil Test for Zinc, Iron

Soil infiltration based on bp neural network and grey relational analysis

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Wang Juan

2013-02-01

Full Text Available Soil infiltration is a key link of the natural water cycle process. Studies on soil permeability are conducive for water resources assessment and estimation, runoff regulation and management, soil erosion modeling, nonpoint and point source pollution of farmland, among other aspects. The unequal influence of rainfall duration, rainfall intensity, antecedent soil moisture, vegetation cover, vegetation type, and slope gradient on soil cumulative infiltration was studied under simulated rainfall and different underlying surfaces. We established a six factor-model of soil cumulative infiltration by the improved back propagation (BP-based artificial neural network algorithm with a momentum term and self-adjusting learning rate. Compared to the multiple nonlinear regression method, the stability and accuracy of the improved BP algorithm was better. Based on the improved BP model, the sensitive index of these six factors on soil cumulative infiltration was investigated. Secondly, the grey relational analysis method was used to individually study grey correlations among these six factors and soil cumulative infiltration. The results of the two methods were very similar. Rainfall duration was the most influential factor, followed by vegetation cover, vegetation type, rainfall intensity and antecedent soil moisture. The effect of slope gradient on soil cumulative infiltration was not significant.

Daily changes of radon concentration in soil gas under influence of atmospheric factors: room temperature, soil surface temperature and relative humidity

Energy Technology Data Exchange (ETDEWEB)

Lara, Evelise G.; Oliveira, Arno Heeren de, E-mail: evelise.lara@gmail.com, E-mail: heeren@nuclear.ufmg.br [Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, MG (Brazil). Departamento de Engenharia Nuclear; Rocha, Zildete; Rios, Francisco Javier, E-mail: rochaz@cdtn.br, E-mail: javier@cdtn.br [Centro de Desenvolvimento da Tecnologia Nuclear (CDTN/CNEN-MG), Belo Horizonte, MG (Brazil)

2015-07-01

This work aims at relating the daily change in the radon concentration in soil gas in a Red Yellow Acrisol (SiBCS) under influence of atmospheric factors: room temperature, soil surface temperature and relative humidity. The {sup 226}Ra, {sup 232}Th, U content and permeability were also performed. The measurements of radon soil gas were carried out by using an AlphaGUARD monitor. The {sup 226}Ra activity concentration was made by Gamma Spectrometry (HPGe); the permeability was carried out using the RADON-JOK permeameter and ICP-MS analysis to {sup 232}Th and U content. The soil permeability is 5.0 x 10{sup -12}, which is considered average. The {sup 226}Ra (22.2 ± 0.3 Bq.m{sup -3}); U content (73.4 ± 3.6 Bq.kg{sup -1}) and {sup 232}Th content (55.3 ± 4.0 Bq.kg{sup -1}) were considered above of average concentrations, according to mean values for soils typical (~ 35.0 Bq.kg{sup -1}) by UNSCEAR. The results showed a difference of 26.0% between the highest and the lowest concentration of radon in soil gas: at midnight (15.5 ± 1.0 kBq.m{sup -3}) and 3:00 pm, the highest mean radon concentration (21.0 ± 1.0 kBq.m{sup -3}). The room temperature and surface soil temperature showed equivalent behavior and the surface soil temperature slightly below room temperature during the entire monitoring time. Nevertheless, the relative humidity showed the highest cyclical behavior, showing a higher relationship with the radon concentration in soil gas. (author)

[Effects of biochar on soil nitrogen cycle and related mechanisms: a review].

Science.gov (United States)

Pan, Yi-Fan; Yang, Min; Dong, Da; Wu, Wei-Xiang

2013-09-01

Biochar has its unique physical and chemical properties, playing a significant role in soil amelioration, nutrient retention, fertility improvement, and carbon storage, and being a hotspot in the research areas of soil ecosystem, biogeochemical cycling, and agricultural carbon sequestration. As a kind of anthropogenic materials, biochar has the potential in controlling soil nitrogen (N) cycle directly or indirectly, and thus, has profound effects on soil ecological functions. This paper reviewed the latest literatures regarding the effects of biochar applications on soil N cycle, with the focuses on the nitrogen species adsorption and the biochemical processes (nitrification, denitrification, and nitrogen fixation) , and analyzed the related action mechanisms of biochar. The future research areas for better understanding the interactions between biochar and soil N cycle were proposed.

Extent of Cropland and Related Soil Erosion Risk in Rwanda

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Fidele Karamage

2016-06-01

Full Text Available Land conversion to cropland is one of the major causes of severe soil erosion in Africa. This study assesses the current cropland extent and the related soil erosion risk in Rwanda, a country that experienced the most rapid population growth and cropland expansion in Africa over the last decade. The land cover land use (LCLU map of Rwanda in 2015 was developed using Landsat-8 imagery. Based on the obtained LCLU map and the spatial datasets of precipitation, soil properties and elevation, the soil erosion rate of Rwanda was assessed at 30-m spatial resolution, using the Revised Universal Soil Loss Equation (RUSLE model. According to the results, the mean soil erosion rate was 250 t·ha−1·a−1 over the entire country, with a total soil loss rate of approximately 595 million tons per year. The mean soil erosion rate over cropland, which occupied 56% of the national land area, was estimated at 421 t·ha−1·a−1 and was responsible for about 95% of the national soil loss. About 24% of the croplands in Rwanda had a soil erosion rate larger than 300 t·ha−1·a−1, indicating their unsuitability for cultivation. With a mean soil erosion rate of 1642 t·ha−1·a−1, these unsuitable croplands were responsible for 90% of the national soil loss. Most of the unsuitable croplands are distributed in the Congo Nile Ridge, Volcanic Range mountain areas in the west and the Buberuka highlands in the north, regions characterized by steep slopes (>30% and strong rainfall. Soil conservation practices, such as the terracing cultivation method, are paramount to preserve the soil. According to our assessment, terracing alone could reduce the mean cropland soil erosion rate and the national soil loss by 79% and 75%, respectively. After terracing, only a small proportion of 7.6% of the current croplands would still be exposed to extreme soil erosion with a rate >300 t·ha−1·a−1. These irremediable cropland areas should be returned to mountain forest to

Lead phytotoxicity in soils and nutrient solutions is related to lead induced phosphorus deficiency

International Nuclear Information System (INIS)

Cheyns, Karlien; Peeters, Sofie; Delcourt, Dorien; Smolders, Erik

2012-01-01

This study was set up to relate lead (Pb) bioavailability with its toxicity to plants in soils. Tomato and barley seedlings were grown in six different PbCl 2 spiked soils (pH: 4.7–7.4; eCEC: 4.2–41.7 cmol c /kg). Soils were leached and pH corrected after spiking to exclude confounding factors. Plant growth was halved at 1600–6500 mg Pb/kg soil for tomato and at 1900–8300 mg Pb/kg soil for barley. These soil Pb threshold were unrelated to soil pH, organic carbon, texture or eCEC and neither soil solution Pb nor Pb 2+ ion activity adequately explained Pb toxicity among soils. Shoot phosphorus (P) concentrations significantly decreased with increasing soil Pb concentrations. Tomato grown in hydroponics at either varying P supply or at increasing Pb (equal initial P) illustrated that shoot P explained growth response in both scenarios. The results suggest that Pb toxicity is partially related to Pb induced P deficiency, likely due to lead phosphate precipitation. - Highlights: ► Tomato and barley shoot growth was affected by Pb toxicity in six different soils. ► Soil properties did not explain differences in plant Pb toxicity among soils. ► Neither soil solution Pb nor Pb 2+ ion activity explained Pb toxicity among soils. ► Shoot phosphorus concentration decreased with increasing soil Pb concentrations. ► Lead induced a P deficiency in plants, likely due to lead phosphate precipitation. - Soil properties did not explain differences in plant lead toxicity among different soils. Shoot phosphorus concentration decreased with increasing soil lead concentrations.

Modeling Soil-Landscape Relations in the Sonoran Desert, Arizona, USA

Science.gov (United States)

Regmi, N. R.; Rasmussen, C.

2015-12-01

Digital soil mapping (DSM) techniques that integrate remotely sensed surface topography and reflectance, and map soil-landscape associations have the potential in improve understanding of critical zone evolution and landscape processes. The goal of this study was to understand the soil-geomorphic evolution of Quaternary alluvial and eolian deposits in the Sonoran Desert using a data-driven DSM technique and mapping of soil-landscape relationships. An iterative principal component analysis (iPCA) data reduction routine was developed and implemented for a set of LiDAR elevation- and Landsat ETM+-derived environmental covariates that characterize soil-landscape variability. Principal components that explain more than 95% of the soil-landscape variability were then integrated and classified based on an ISODATA (Iterative Self-Organizing Data) unsupervised technique. The classified map was then segmented based on a region growing algorithm and multi-scale maps of soil-landscape relations were developed, which then compared with maps of major arid-region landforms that can be identified on aerial photographs and satellite images by their distinguishing tone and texture, and in the field by their distinguishing surface and sub-surface soil physical, chemical and biological properties. The approach identified and mapped the soil-landscape variability of alluvial and eolian landscapes, and illustrated the applicability of coupling covariate selection and integration by iPCA, ISODATA classifications of integrated layers, and image segmentation for effective spatial prediction of soil-landscape characteristics. The approach developed here is data-driven, cost- and time-effective, applicable for multi-scale mapping, allows incorporation of wide variety of covariates, and provides accurate quantitative prediction of wide range of soil-landscape attributes that are necessary for hydrologic models, land and ecosystem management decisions, and hazard assessment.

Relating coccidioidomycosis (valley fever) incidence to soil moisture conditions.

Science.gov (United States)

Coopersmith, E J; Bell, J E; Benedict, K; Shriber, J; McCotter, O; Cosh, M H

2017-04-17

Coccidioidomycosis (also called Valley fever) is caused by a soilborne fungus, Coccidioides spp. , in arid regions of the southwestern United States. Though some who develop infections from this fungus remain asymptomatic, others develop respiratory disease as a consequence. Less commonly, severe illness and death can occur when the infection spreads to other regions of the body. Previous analyses have attempted to connect the incidence of coccidioidomycosis to broadly available climatic measurements, such as precipitation or temperature. However, with the limited availability of long-term, in situ soil moisture data sets, it has not been feasible to perform a direct analysis of the relationships between soil moisture levels and coccidioidomycosis incidence on a larger temporal and spatial scale. Utilizing in situ soil moisture gauges throughout the southwest from the U.S. Climate Reference Network and a model with which to extend those estimates, this work connects periods of higher and lower soil moisture in Arizona and California between 2002 and 2014 to the reported incidence of coccidioidomycosis. The results indicate that in both states, coccidioidomycosis incidence is related to soil moisture levels from previous summers and falls. Stated differently, a higher number of coccidioidomycosis cases are likely to be reported if previous bands of months have been atypically wet or dry, depending on the location.

Organic amendment of crop soil and its relation to hotspots of bacterial nitrogen cycling

Science.gov (United States)

Pereg, Lily; McMillan, Mary

2015-04-01

Crop production in Australian soils requires a high use of fertilisers, including N, P and K for continues utilisation of the soil. Growers often grow crops in rotation of summer crop, such as cotton with winter crop, such as wheat in the same field. Growers are getting more and more aware about sustainability of the soil resources and the more adventurous ones use soil amendments, such as organic supplements in addition to the chemical fertilisers. We have collected soil samples from fields that were cultivated in preparation for planting cotton and tested the soil for its bacterial populations with potential to perform different functions, including those related to the nitrogen cycling. One of our aims was to determine whether organic amendments create hotspots for bacterial functions related to bacterial nitrogen cycling. This pan of the project will be discussed in this presentation.

Annotating activation/inhibition relationships to protein-protein interactions using gene ontology relations.

Science.gov (United States)

Yim, Soorin; Yu, Hasun; Jang, Dongjin; Lee, Doheon

2018-04-11

Signaling pathways can be reconstructed by identifying 'effect types' (i.e. activation/inhibition) of protein-protein interactions (PPIs). Effect types are composed of 'directions' (i.e. upstream/downstream) and 'signs' (i.e. positive/negative), thereby requiring directions as well as signs of PPIs to predict signaling events from PPI networks. Here, we propose a computational method for systemically annotating effect types to PPIs using relations between functional information of proteins. We used regulates, positively regulates, and negatively regulates relations in Gene Ontology (GO) to predict directions and signs of PPIs. These relations indicate both directions and signs between GO terms so that we can project directions and signs between relevant GO terms to PPIs. Independent test results showed that our method is effective for predicting both directions and signs of PPIs. Moreover, our method outperformed a previous GO-based method that did not consider the relations between GO terms. We annotated effect types to human PPIs and validated several highly confident effect types against literature. The annotated human PPIs are available in Additional file 2 to aid signaling pathway reconstruction and network biology research. We annotated effect types to PPIs by using regulates, positively regulates, and negatively regulates relations in GO. We demonstrated that those relations are effective for predicting not only signs, but also directions of PPIs. The usefulness of those relations suggests their potential applications to other types of interactions such as protein-DNA interactions.

Characterisation of a reference site for quantifying uncertainties related to soil sampling

International Nuclear Information System (INIS)

Barbizzi, Sabrina; Zorzi, Paolo de; Belli, Maria; Pati, Alessandra; Sansone, Umberto; Stellato, Luisa; Barbina, Maria; Deluisa, Andrea; Menegon, Sandro; Coletti, Valter

2004-01-01

An integrated approach to quality assurance in soil sampling remains to be accomplished. - The paper reports a methodology adopted to face problems related to quality assurance in soil sampling. The SOILSAMP project, funded by the Environmental Protection Agency of Italy (APAT), is aimed at (i) establishing protocols for soil sampling in different environments; (ii) assessing uncertainties associated with different soil sampling methods in order to select the 'fit-for-purpose' method; (iii) qualifying, in term of trace elements spatial variability, a reference site for national and international inter-comparison exercises. Preliminary results and considerations are illustrated

Haptoglobin-related protein is a high-affinity hemoglobin-binding plasma protein

DEFF Research Database (Denmark)

Nielsen, Marianne Jensby; Petersen, Steen Vang; Jacobsen, Christian

2006-01-01

Haptoglobin-related protein (Hpr) is a primate-specific plasma protein associated with apolipoprotein L-I (apoL-I)-containing high-density lipoprotein (HDL) particles shown to be a part of the innate immune defense. Despite the assumption hitherto that Hpr does not bind to hemoglobin, the present...

Stabilization and incorporation into biomass of specific plant carbons during biodegradation in soil

International Nuclear Information System (INIS)

Stott, D.E.; Kassim, G.; Jarrell, W.M.; Martin, J.P.; Haider, K.; Bundesforschungsanstalt fuer Landwirtschaft, Braunschweig

1983-01-01

The effect of soil type and incubation period on the biodegradation, incorporation into biomass, and stabilization in humus of 14 C-labeled cornstalk and/or wheat straw lignin, polysaccharide, and protein fractions were followed for one year. After 6 months, 56-68%, 6-21%, 71-81%, 63-75%, and 56-68% from wheat straw and from the lignin, polysaccharide, and protein fraction of wheat straw had been lost as CO 2 , respectively. Loss of CO 2 increased only slightly with further incubation. Greater amounts of CO 2 , especially during the early incubation stages, were evolved from neutral and alkaline soils (pH 7.0, 7.4, 7.8) than from acid soils (pH 5.0, 5.5). After one year, a major portion of the residual C from lignin was recovered in the humic acid fraction, relatively small amounts, 5 to 17% were lost upon acid hydrolysis, and generally <1% was found present in the biomass. Lesser amounts of the polysaccharide and protein carbons were incorporated into the humic acid, 17-20% and 16-27% respectively. Relatively greater amounts of the residual carbons of the polysaccharide and protein were incorporated into the biomass, 4.9-7.8% and 4.6-13.4%, respectively and higher percentages were lost upon acid hydrolysis, 56 to 81%. The results for the whole wheat straw were very similar to those of the protein fraction. Overall, more residual C was stabilized into humic acid in the acid soils than in the neutral soils. (orig.)

Nematode survival in relation to soil moisture

NARCIS (Netherlands)

Simons, W.R.

1973-01-01

Established nematode populations are very persistent in the soil. It is known that they need sufficient soil moisture for movement, feeding and reproduction (fig. 5), and that there are adverse soil moisture conditions which they cannot survive. The influence of soil moisture on survival

Absorption of technetium by plants in relation to soil type contamination level and time

Energy Technology Data Exchange (ETDEWEB)

Mousny, J.M.; Myttenaere, C. (Louvain Univ. (Belgium). Lab. de Physiologie Vegetale)

1981-01-01

Plants of Pisum sativum (var. Merveille de Kelvedon) were grown on seven typical european soils contaminated with different levels of /sup 99/Tc(0.17; 1.7 and 17 ..mu..Ci/kg). Added initially as pertechnetate, the technetium absorption has been studied for three successive cultures. The translocation of technetium from soil to plant leaves is high, but its transfer is reduced in soils rich in organic matter (Fen) or poorly drained (Braunerde). Aging reduces the technetium transfer and modify its relative distribution in plant (relatively more technetium is found in fruits); these results let suppose some modification of the technetium chemical form in soils with time.

Importance of soil-water relation in assessment endpoint in bioremediated soils: Plant growth and soil physical properties

International Nuclear Information System (INIS)

Li, X.; Sawatsky, N.

1995-01-01

Much effort has been focused on defining the end-point of bioremediated soils by chemical analysis (Alberta Tier 1 or CCME Guideline for Contaminated Soils) or toxicity tests. However, these tests do not completely assess the soil quality, or the capability of soil to support plant growth after bioremediation. This study compared barley (Hordeum vulgare) growth on: (i) non-contaminated, agricultural topsoil, (2) oil-contaminated soil (4% total extractable hydrocarbons, or TEH), and (3) oil-contaminated soil treated by bioremediation (< 2% TEH). Soil physical properties including water retention, water uptake, and water repellence were measured. The results indicated that the growth of barley was significantly reduced by oil-contamination of agricultural topsoil. Furthermore, bioremediation did not improve the barley yield. The lack of effects from bioremediation was attributed to development of water repellence in hydrocarbon contaminated soils. There seemed to be a critical water content around 18% to 20% in contaminated soils. Above this value the water uptake by contaminated soil was near that of the agricultural topsoil. For lower water contents, there was a strong divergence in sorptivity between contaminated and agricultural topsoil. For these soils, water availability was likely the single most important parameter controlling plant growth. This parameter should be considered in assessing endpoint of bioremediation for hydrocarbon contaminated soils

Relative quantification of protein-protein interactions using a dual luciferase reporter pull-down assay system.

Directory of Open Access Journals (Sweden)

Shuaizheng Jia

Full Text Available The identification and quantitative analysis of protein-protein interactions are essential to the functional characterization of proteins in the post-proteomics era. The methods currently available are generally time-consuming, technically complicated, insensitive and/or semi-quantitative. The lack of simple, sensitive approaches to precisely quantify protein-protein interactions still prevents our understanding of the functions of many proteins. Here, we develop a novel dual luciferase reporter pull-down assay by combining a biotinylated Firefly luciferase pull-down assay with a dual luciferase reporter assay. The biotinylated Firefly luciferase-tagged protein enables rapid and efficient isolation of a putative Renilla luciferase-tagged binding protein from a relatively small amount of sample. Both of these proteins can be quantitatively detected using the dual luciferase reporter assay system. Protein-protein interactions, including Fos-Jun located in the nucleus; MAVS-TRAF3 in cytoplasm; inducible IRF3 dimerization; viral protein-regulated interactions, such as MAVS-MAVS and MAVS-TRAF3; IRF3 dimerization; and protein interaction domain mapping, are studied using this novel assay system. Herein, we demonstrate that this dual luciferase reporter pull-down assay enables the quantification of the relative amounts of interacting proteins that bind to streptavidin-coupled beads for protein purification. This study provides a simple, rapid, sensitive, and efficient approach to identify and quantify relative protein-protein interactions. Importantly, the dual luciferase reporter pull-down method will facilitate the functional determination of proteins.

Soil-related geohazard assessments for maintaining the UK's minor road network

Science.gov (United States)

Pritchard, Oliver; Hallett, Stephen; Farewell, Timothy

2015-04-01

The minor road network of the UK (United Kingdom) encompasses 98% of the overall road network. In recent years the UK's roads have been deteriorating, currently rated 26th in the world and considered at risk and declining by the Institution of Civil Engineers (ICE). Many factors contribute to the degradation and ultimately, to the failure of particular road sections. However, several UK local authorities have identified that during drought conditions, road sections founded upon clay soils which are susceptible to volumetric shrinkage and swelling undergo significant deterioration compared to those sections on non-susceptible soils. Droughts in East Anglia recently resulted in estimated damages of £26 million, leading several local authorities to apply to Central Government for emergency funding. The minor or evolved road network is most at risk due to them having often little, if any, structural foundations. This paper addresses the use of soil-related geohazard assessments and GIS (Geographical Information Systems) in helping to provide a soil-informed maintenance strategy for the asset management of the important (both socially and commercially) local road network of the UK. Furthermore, to establish future subsidence risk, UKCP09 climate projections have been used to model the likely potential soil moisture deficit (PSMD) for baseline (1961-1990), 2030 (2020-2049) and 2050 (2040-2069) scenarios. The incorporation of probabilistic PSMD data into clay-related subsidence models has allowed an assessment of potential subsidence risk, with a range of uncertainties, for these scenarios. Intersection of road networks with future projections of subsidence risk has enabled metrics of potential vulnerability to be established. This will aid prioritisation of areas which require further maintenance to make them more climate resilient, avoiding emergency funding situations. Subsequently, this approach can then be extrapolated to the entire UK minor road network, on a local

CARBON FIXING CAPACITY OF AMAZONIAN SOILS IN RELATION TO ITS DEGRADATION CONDITIONS

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Clara Patricia Peña Venegas

2015-06-01

Full Text Available Amazonian deforestation and transformation alert about their effects worldwide. One concern is the increase of the Carbon (C levels emitted. Previous works have estimated the fixed C in Amazon forests without including the C stored in soils. Within soil, the organic carbon molecules are highly sensitive to degradation, affecting the natural capacity of soils to fix and store C. The present study evaluates the impact of degradation in the natural capacity of Amazon soils to fix C. Thirty five farms with different typology were selected in Caquetá department which hold the highest deforestation and soil degradation rates in the Colombian Amazon. Soil samples were taken from natural forest relicts, cropping areas and introduced pastures of the farms, in locations with high, intermediate and low soil degradation. Aerial biomass was estimated in pastures with different level of soil degradation. Changes in the labile C stock were estimated from the soil organic carbon and the microbial biomass using substrate induced respiration. Results showed that the main C pool is in the natural forest relicts and the crops of the farms, independently from the size or type of farm sampled. The hills with higher intervention showed the lowest soil C fixation capacities. The soil C fixation capacity was related with changes in the soil microbial composition where conserved soils store preferentially C as fungal biomass while degraded soils store C as bacterial biomass. These estimations contribute to establish the cost of sustainability and soil degradation in the Colombian Amazon.

PROTEINS OF POTATOES IN RELATION TO THE CONTENT OF CADMIUM IN THEIR TUBERS

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Judita Bystrická

2010-11-01

Full Text Available In the work the influence of cadmium in soil on the range of cumulating in tubers of potatoes and in proteins of potatoes grown under model conditions of pot trial experiment and under the real conditions of locality Imeľ in Danube Lowland was surveyed. Under conditions of pot trial the increased contents in tubers positively correlated with contents of cadmium applied into soil; the highest content of Cd was assessed in variety Junior (from 0.211 mg.kg-1 FM in 1st variant to 0.715 mg.kg-1 FM in 4th variant. The influence of increased content of Cd was manifested statistically significant in the content of proteins also in the content of Cd in protein fractions (1st var. 0.026 (Asterix – 0.045 (Agria mg.kg-1 FM; 2nd var. 0.047 (Livera – 0.085 (Asterix mg.kg-1 FM; 3rd var. 0.06 (Livera – 0.117 (Junior mg.kg-1 FM; 4th var. 0.068 (Livera – 0.142 (Asterix mg.kg-1 FM. Contents of Cd in potatoes from locality Imeľ did not exceed the value 0.1 mg.kg-1 FM defined in PK SR. The average contents of proteins were in range from 1.19 % (Victoria to 1.489 % (Adora, the average content of Cd cumulated in proteins was the highest in variety Vivaldi (1.317 μg.kg-1 FM. Positive correlation was confirmed between the content of Cd in potato tubers and in proteins only in Livera variety. doi:10.5219/74

The Relationship between an Invasive Shrub and Soil Moisture: Seasonal Interactions and Spatially Covarying Relations

Directory of Open Access Journals (Sweden)

Yuhong He

2014-09-01

Full Text Available Recent studies indicate that positive relationships between invasive plants and soil can contribute to further plant invasions. However, it remains unclear whether these relations remain unchanged throughout the growing season. In this study, spatial sequences of field observations along a transect were used to reveal seasonal interactions and spatially covarying relations between one common invasive shrub (Tartarian Honeysuckle, Lonicera tatarica and soil moisture in a tall grassland habitat. Statistical analysis over the transect shows that the contrast between soil moisture in shrub and herbaceous patches vary with season and precipitation. Overall, a negatively covarying relationship between shrub and soil moisture (i.e., drier surface soils at shrub microsites exists during the very early growing period (e.g., May, while in summer a positively covarying phenomenon (i.e., wetter soils under shrubs is usually evident, but could be weakened or vanish during long precipitation-free periods. If there is sufficient rainfall, surface soil moisture and leaf area index (LAI often spatially covary with significant spatial oscillations at an invariant scale (which is governed by the shrub spatial pattern and is about 8 m, but their phase relation in space varies with season, consistent with the seasonal variability of the co-varying phenomena between shrub invasion and soil water content. The findings are important for establishing a more complete picture of how shrub invasion affects soil moisture.

Actin, actin-binding proteins, and actin-related proteins in the nucleus.

Science.gov (United States)

Kristó, Ildikó; Bajusz, Izabella; Bajusz, Csaba; Borkúti, Péter; Vilmos, Péter

2016-04-01

Extensive research in the past decade has significantly broadened our view about the role actin plays in the life of the cell and added novel aspects to actin research. One of these new aspects is the discovery of the existence of nuclear actin which became evident only recently. Nuclear activities including transcriptional activation in the case of all three RNA polymerases, editing and nuclear export of mRNAs, and chromatin remodeling all depend on actin. It also became clear that there is a fine-tuned equilibrium between cytoplasmic and nuclear actin pools and that this balance is ensured by an export-import system dedicated to actin. After over half a century of research on conventional actin and its organizing partners in the cytoplasm, it was also an unexpected finding that the nucleus contains more than 30 actin-binding proteins and new classes of actin-related proteins which are not able to form filaments but had evolved nuclear-specific functions. The actin-binding and actin-related proteins in the nucleus have been linked to RNA transcription and processing, nuclear transport, and chromatin remodeling. In this paper, we attempt to provide an overview of the wide range of information that is now available about actin, actin-binding, and actin-related proteins in the nucleus.

Soil radon pulses related to the initial phase of volcanic eruptions

International Nuclear Information System (INIS)

Segovia, N.; Mena, M.

1999-01-01

Soil radon behaviour related to the initial phase of volcanic eruptions is analysed from reported values related to the explosivity of four American stratovolcaneos: El Chicon (1982) and Popocatepetl (1994) in Mexico, Poas (1987-1990) in Costa Rica and Cerro Negro (1982) in Nicaragua. The measurements in the field were performed with solid-state nuclear track detectors and electrets. The ratio between the magnitudes of the radon in soil peaks generated when the eruptive period started and the average radon values corresponding to quiescence periods indicate a dependence on the volcanic eruptive index for each one of the eruptive periods

A possible mechanism relating increased soil temperature to forest decline

International Nuclear Information System (INIS)

Tomlinson, G.H.

1993-01-01

Nutrient cations are removed from the soil by uptake in biomass, and by leaching as a result of soil acidification. Such acidification results from acid deposition and/or from HNO 3 formed by mineralization and nitrification of humus, when at a rate in excess of the tree's nutritional requirements. This has been found to occur during and following periods of increased temperature and reduced rainfall. The cumulative loss of either Ca 2+ , Mg 2+ or K + by one or more of these processes, if greater than the amount released from the specific minerals in that soil, leads to nutrient deficiency, fine root mortality, poor growth, and eventually to die-back. Trees growing in soils derived from specific minerals in which there is a strong imbalance in the elements from which the exchangeable nutrients are formed, are vulnerable to nutrient deficiency. This paper discusses the relevance of earlier studies, when considered in relation to more recent findings. In Hawaii there have been frequent periods of increased temperature and drought resulting from the El Nino Southern Oscillation. This fact, when considered in relation to the relatively low K content, and its imbalance with Ca and Mg in the lava and volcanic ash on which the trees have grown, could result in K deficiency in the declining ohia trees. It is possible that the unusual periods of increased temperature and drought which have occurred in certain other localized areas may have led to the decline symptoms recently observed. In view of the threat of global warming, this possibility should be investigated. 39 refs., 3 figs., 2 tabs

[Investigation and analysis of heavy metal pollution related to soil-Panax notoginseng system].

Science.gov (United States)

Chen, Lu; Mi, Yan-Hua; Lin, Xin; Liu, Da-Hui; Zeng, Min; Chen, Xiao-Yan

2014-07-01

In this study, five heavy metals contamination of soil and different parts of Panax notoginseng in the plantation area was investigated. Analysis of heavy metals correlation between the planting soil and P. notoginseng; and the absorption and accumulation characteristics and translocation of soil heavy metals by P. notoginseng plants was revealed. Through field investigation and laboratory analytical methods, analysis of China's 30 different soil P. notoginseng origin and content of heavy metals in five different parts of the P. notoginseng plant content of heavy metals. The results revealed that the soil heavy metals should not be neglected in the plantation area Referring to the national soil quality standards (GB15608-1995), the excessive degree of soil heavy metals pollution showed Hg > As > Cd > Cr in the plantation area, and Pb content of soil was in the scope of the standard. Refer to 'Green Industry Standards for Import and Export of Medical Plants and Preparations', the excessive degree of heavy metals content of P. notoginseng plants showed As > Pb > Cr > Cd, and Hg content of plants was in the scope of the standard. Concentrations of five heavy metals of underground parts of P. notoginseng plants are higher than aboveground, and heavy metals elements are more concentrated in the root, followed by the rhizome of P. notoginseng plants. Heavy metal accumulation characteristics of the different parts of the P. notoginseng of the overall performance is the root > the rhizome > the root tuber > leaves > stems. From the point of view BCF value analysis of various parts of the P. notoginseng plants to absorb heavy metals in soil, BCF values of all samples were less than 1, description P. notoginseng not belong Hyperaccumulator. From the view of transportation and related analysis of the soil-P. notoginseng systems, the rhizome of P. notoginseng and the content of As and Cr in soil was significantly correlated, the root of P. notoginseng and the content of Cd in

Assessing the dynamics of the upper soil layer relative to soil management practices

Science.gov (United States)

Hatfield, J.; Wacha, K.; Dold, C.

2017-12-01

The upper layer of the soil is the critical interface between the soil and the atmosphere and is the most dynamic in response to management practices. One of the soil properties most reflective to changes in management is the stability of the aggregates because this property controls infiltration of water and exchange of gases. An aggregation model has been developed based on the factors that control how aggregates form and the forces which degrade aggregates. One of the major factors for this model is the storage of carbon into the soil and the interaction with the soil biological component. To increase soil biology requires a stable microclimate that provides food, water, shelter, and oxygen which in turn facilitates the incorporation of organic material into forms that can be combined with soil particles to create stable aggregates. The processes that increase aggregate size and stability are directly linked the continual functioning of the biological component which in turn changes the physical and chemical properties of the soil. Soil aggregates begin to degrade as soon as there is no longer a supply of organic material into the soil. These processes can range from removal of organic material and excessive tillage. To increase aggregation of the upper soil layer requires a continual supply of organic material and the biological activity that incorporates organic material into substances that create a stable aggregate. Soils that exhibit stable soil aggregates at the surface have a prolonged infiltration rate with less runoff and a gas exchange that ensures adequate oxygen for maximum biological activity. Quantifying the dynamics of the soil surface layer provides a quantitative understanding of how management practices affect aggregate stability.

The clinical expression of hereditary protein C and protein S deficiency: : a relation to clinical thrombotic risk-factors and to levels of protein C and protein S

NARCIS (Netherlands)

Henkens, C. M. A.; van der Meer, J.; Hillege, J. L.; Bom, V. J. J.; Halie, M. R.; van der Schaaf, W.

We investigated 103 first-degree relatives of 13 unrelated protein C or protein S deficient patients to assess the role of additional thrombotic risk factors and of protein C and protein S levels in the clinical expression of hereditary protein C and protein S deficiency. Fifty-seven relatives were

Elevated carbon dioxide: impacts on soil and plant water relations

National Research Council Canada - National Science Library

Kirkham, M. B

2011-01-01

.... Focusing on this critical issue, Elevated Carbon Dioxide: Impacts on Soil and Plant Water Relations presents research conducted on field-grown sorghum, winter wheat, and rangeland plants under elevated CO2...

Microbial Diversity in Cerrado Biome (Neotropical Savanna Soils.

Directory of Open Access Journals (Sweden)

Alinne Pereira de Castro

Full Text Available The Cerrado, the largest savanna region in South America, is located in central Brazil. Cerrado physiognomies, which range from savanna grasslands to forest formations, combined with the highly weathered, acidic clay Cerrado soils form a unique ecoregion. In this study, high-throughput sequencing of ribosomal RNA genes was combined with shotgun metagenomic analysis to explore the taxonomic composition and potential functions of soil microbial communities in four different vegetation physiognomies during both dry and rainy seasons. Our results showed that changes in bacterial, archaeal, and fungal community structures in cerrado denso, cerrado sensu stricto, campo sujo, and gallery forest soils strongly correlated with seasonal patterns of soil water uptake. The relative abundance of AD3, WPS-2, Planctomycetes, Thermoprotei, and Glomeromycota typically decreased in the rainy season, whereas the relative abundance of Proteobacteria and Ascomycota increased. In addition, analysis of shotgun metagenomic data revealed a significant increase in the relative abundance of genes associated with iron acquisition and metabolism, dormancy, and sporulation during the dry season, and an increase in the relative abundance of genes related to respiration and DNA and protein metabolism during the rainy season. These gene functional categories are associated with adaptation to water stress. Our results further the understanding of how tropical savanna soil microbial communities may be influenced by vegetation covering and temporal variations in soil moisture.

Soil aggregation and slope stability related to soil density, root length, and mycorrhiza

Science.gov (United States)

Graf, Frank; Frei, Martin

2013-04-01

Eco-engineering measures combine the use of living plants and inert mechanical constructions to protect slopes against erosion and shallow mass movement. Whereas in geotechnical engineering several performance standards and guidelines for structural safety and serviceability of construction exist, there is a lack of comparable tools in the field of ecological restoration. Various indicators have been proposed, including the fractal dimension of soil particle size distribution, microbiological parameters, and soil aggregate stability. We present results of an soil aggregate stability investigation and compare them with literature data of the angle of internal friction ?' which is conventionally used in slope stability analysis and soil failure calculation. Aggregate stability tests were performed with samples of differently treated moraine, including soil at low (~15.5 kN/m³) and high (~19.0 kN/m³) dry unit weight, soil planted with Alnus incana (White Alder) as well as the combination of soil planted with alder and inoculated with the mycorrhizal fungus Melanogaster variegatus s.l. After a 20 weeks growth period in a greenhouse, a total of 100 samples was tested and evaluated. Positive correlations were found between the soil aggregate stability and the three variables dry unit weight, root length per soil volume, and degree of mycorrhization. Based on robust statistics it turned out that dry unit weight and mycorrhization degree were strongest correlated with soil aggregate stability. Compared to the non-inoculated control plants, mycorrhized White Alder produced significantly more roots and higher soil aggregate stability. Furthermore, the combined biological effect of plant roots and mycorrhizal mycelia on aggregate stability on soil with low density (~15.5 kN/m³) was comparable to the compaction effect of the pure soil from 15.5 to ~19.0 kN/m³. Literature data on the effect of vegetation on the angle of internal friction ?' of the same moraine showed

A protein relational database and protein family knowledge bases to facilitate structure-based design analyses.

Science.gov (United States)

Mobilio, Dominick; Walker, Gary; Brooijmans, Natasja; Nilakantan, Ramaswamy; Denny, R Aldrin; Dejoannis, Jason; Feyfant, Eric; Kowticwar, Rupesh K; Mankala, Jyoti; Palli, Satish; Punyamantula, Sairam; Tatipally, Maneesh; John, Reji K; Humblet, Christine

2010-08-01

The Protein Data Bank is the most comprehensive source of experimental macromolecular structures. It can, however, be difficult at times to locate relevant structures with the Protein Data Bank search interface. This is particularly true when searching for complexes containing specific interactions between protein and ligand atoms. Moreover, searching within a family of proteins can be tedious. For example, one cannot search for some conserved residue as residue numbers vary across structures. We describe herein three databases, Protein Relational Database, Kinase Knowledge Base, and Matrix Metalloproteinase Knowledge Base, containing protein structures from the Protein Data Bank. In Protein Relational Database, atom-atom distances between protein and ligand have been precalculated allowing for millisecond retrieval based on atom identity and distance constraints. Ring centroids, centroid-centroid and centroid-atom distances and angles have also been included permitting queries for pi-stacking interactions and other structural motifs involving rings. Other geometric features can be searched through the inclusion of residue pair and triplet distances. In Kinase Knowledge Base and Matrix Metalloproteinase Knowledge Base, the catalytic domains have been aligned into common residue numbering schemes. Thus, by searching across Protein Relational Database and Kinase Knowledge Base, one can easily retrieve structures wherein, for example, a ligand of interest is making contact with the gatekeeper residue.

Relating soil biochemistry to sustainable crop production

Science.gov (United States)

Amino acids, amino sugars, carbohydrates, phenols, and fatty acids together comprise appreciable proportions of soil organic matter (SOM). Their cycling contribute to soil processes, including nitrogen availability, carbon sequestration and aggregation. For example, soil accumulation of phenols has ...

Biochar composts and composites.

Science.gov (United States)

Ekebafe, Marian Osazoduwa; Ekebafe, Lawrence Olu; Ugbesia, Stella Omozee

2015-01-01

Research has shown that the carbon content of wastes decreases during composting with an increase in the nitrogen content. This indicates that the increased microbial activity in the process results in an increased mineralisation rate of organic nitrogen. A formula containing biochar in the form of terra preta, biochar bokashi, biochar glomalin, biochar hydrogel and biochar mokusaku-eki could further enhance the stability of the system and its effectiveness as a soil ameliorant. It could increase the cation exchange capacity, reuse crop residue, reduce runoff, reduce watering, reduce the quantity of fertiliser increase crop yield, build and multiply soil biodiversity, strengthen and rebuild our soil food web, sequester atmospheric carbon in a carbon negative process, increase soil pH, restructure poor soils, and reduce carbon dioxide/methane/ nitrous oxide/ammonia emissions from gardens and fields. This paper considers these claims and also the wider environmental implications of the adoption of these processes. The intention of this overview is not just to summarise current knowledge of the subject, but also to identify gaps in knowledge that require further research.

Relative efficiency of legumes in utilizing soil and fertilizer phosphorus

International Nuclear Information System (INIS)

Joshi, O.P.; Prasad, R.; Subbiah, B.V.

1977-01-01

A pot-culture study was made at Indian Agricultural Research Institute, New Delhi to study the native P feeding power of six rainy season legumes (green gram, black gram, cowpea, pigeon pea, soyabean and groundnut). Ordinary superphosphate tagged with 32 P was used in the study. At the first harvest (30 days after seeding) soybean and cowpea and at the second harvest (45 days after sowing) cowpea and groundnut removed more P than the other legumes. Pigeon pea removed the least P due to its slow growth. The tracer studies showed that during the first 30 days, groundnut, pigeon pea and soyabean were relatively better feeders of native soil P than the other legumes. Some varietal differences with respect to their capacity to feed on native soil P were also observed and in groundnut the varieties AK-12-24 and Jyoti removed more soil P than the variety NG-268. Differences between the legumes with respect to feeding on native soil P were much less at the second harvest (45 days after seeding). (author)

Relative efficiency of legumes in utilizing soil and fertilizer phosphorus

Energy Technology Data Exchange (ETDEWEB)

Joshi, O P; Prasad, R; Subbiah, B V [Indian Agricultural Research Inst., New Delhi. Nuclear Research Lab.

1977-09-01

A pot-culture study was made at Indian Agricultural Research Institute, New Delhi to study the native P feeding power of six rainy season legumes (green gram, black gram, cowpea, pigeon pea, soybean and groundnut). Ordinary superphosphate tagged with /sup 32/P was used in the study. At the first harvest (30 days after seeding) soybean and cowpea and at the second harvest (45 days after sowing) cowpea and groundnut removed more P than the other legumes. Pigeon pea removed the least P due to its slow growth. The tracer studies showed that during the first 30 days, groundnut, pigeon pea and soybean were relatively better feeders of native soil P than the other legumes. Some varietal differences with respect to their capacity to feed on native soil P were also observed and in groundnut the varieties AK-12-24 and Jyoti removed more soil P than the variety NG-268. Differences between the legumes with respect to feeding on native soil P were much less at the second harvest (45 days after seeding).

Relations between protein production, protein quality and environmental factors in Pisum mutants

International Nuclear Information System (INIS)

Gottschalk, W.; Mueller, H.P.; Wolff, G.

1975-01-01

The seed protein content of 138 radiation-induced Pisum mutants was determined. The variability of this genetically well-defined material agrees approximately with that of the world collection of Pisum sativum. Some environmental factors to a great extent influence the protein production of the mutants and the initial line. Therefore, it is necessary to consider the relations between the genetically controlled protein production and its dependence upon the environmental factors. This is especially evident if the protein situation of the same genotypes cultivated under the moderate climatic conditions of middle Europe is compared with the subtropical conditions of India. A generally firm correlation between seed size and protein content could not be found in material regarding 148 different mutants of our assortment. Therefore, the selection of small-grained mutants does not result in a selection of protein-rich genotypes in Pisum sativum. Considering all the criteria positively and negatively influencing the protein production, a positive situation could be found in some mutants, especially in the fasciated ones. Furthermore, an improvement of the protein quality could be reached by a genetically conditioned alteration of the globulin-albumin ratio leading to an increase of some essential amino acids such as methionine and lysine. The combined action of mutant genes results in unexpected changes of the protein quantity as well as the quality of the recombinants in relation to their parental mutants. The comparison of some essential amino acids of our useful mutants with those of the varieties of other genera of the Leguminosae shows certain trends of biochemical alterations realized during evolutionary development of the family. (author)

Integrated use of biochar: a tool for improving soil and wheat quality of degraded soil under wheat-maize cropping pattern

International Nuclear Information System (INIS)

Ali, K.; Arif, M.; Jan, M.T.

2015-01-01

Wheat quality, nutrient uptake and nutrient use efficiency are significantly influenced by nutrient sources and application rate. To investigate the integrative effect of biochar, farmyard manure (FYM) and nitrogen (organic and inorganic soil amendments) in a wheat-maize cropping system, a two year study was designed to assess the interactive outcome of biochar, FYM and nitrogenous fertilizer on wheat nitrogen (N) parameters and associated soil quality parameters. Three levels of biochar (0, 25 and 50 t ha-1), two levels of FYM (5 and 10 t ha-1) and two levels of nitrogen fertilizer (60 and 120 kg ha-1) were used in the study. Biochar application displayed a significantly increased in wheat leaf, stem, straw and grain N content; grain and total N-uptake and grain protein content by 24, 20, 24, 56, 50, 17 and 20% respectively. Similarly, biochar application significantly increased soil total N (TN) and soil mineral N (SMN) by 63 and 40% respectively in second year. FYM application increased grain, leaf and straw N content by 20, 19.5 and 18% respectively, and increased total N-uptake and grain protein content by 49 and 19% respectively. FYM increased soil TN and SMN by 63 and 32% in both the years of the experiment. Mineral N application increased soil TN by over a half and SMN by a third, and grain protein content increased 16%. In contrast, nitrogen use efficiency (NUE) decreased for all amendments relative to the control. However, biochar treated plots improved NUE by 38% compared to plots without biochar. In conclusion, this field experiment has illustrated the potential of biochar to bring about short-term benefits in wheat and soil quality parameters in wheat-maize cropping systems. However, the long-term benefits remain to be quantified. (author)

Relating microbial community structure to functioning in forest soil organic carbon transformation and turnover.

Science.gov (United States)

You, Yeming; Wang, Juan; Huang, Xueman; Tang, Zuoxin; Liu, Shirong; Sun, Osbert J

2014-03-01

Forest soils store vast amounts of terrestrial carbon, but we are still limited in mechanistic understanding on how soil organic carbon (SOC) stabilization or turnover is controlled by biotic and abiotic factors in forest ecosystems. We used phospholipid fatty acids (PLFAs) as biomarker to study soil microbial community structure and measured activities of five extracellular enzymes involved in the degradation of cellulose (i.e., β-1,4-glucosidase and cellobiohydrolase), chitin (i.e., β-1,4-N-acetylglucosaminidase), and lignin (i.e., phenol oxidase and peroxidase) as indicators of soil microbial functioning in carbon transformation or turnover across varying biotic and abiotic conditions in a typical temperate forest ecosystem in central China. Redundancy analysis (RDA) was performed to determine the interrelationship between individual PFLAs and biotic and abiotic site factors as well as the linkage between soil microbial structure and function. Path analysis was further conducted to examine the controls of site factors on soil microbial community structure and the regulatory pathway of changes in SOC relating to microbial community structure and function. We found that soil microbial community structure is strongly influenced by water, temperature, SOC, fine root mass, clay content, and C/N ratio in soils and that the relative abundance of Gram-negative bacteria, saprophytic fungi, and actinomycetes explained most of the variations in the specific activities of soil enzymes involved in SOC transformation or turnover. The abundance of soil bacterial communities is strongly linked with the extracellular enzymes involved in carbon transformation, whereas the abundance of saprophytic fungi is associated with activities of extracellular enzymes driving carbon oxidation. Findings in this study demonstrate the complex interactions and linkage among plant traits, microenvironment, and soil physiochemical properties in affecting SOC via microbial regulations.

Impact of manure-related DOM on sulfonamide transport in arable soils

Science.gov (United States)

Zhou, Dan; Thiele-Bruhn, Sören; Arenz-Leufen, Martina Gesine; Jacques, Diederik; Lichtner, Peter; Engelhardt, Irina

2016-09-01

Field application of livestock manure introduces colloids and veterinary antibiotics, e.g. sulfonamides (SAs), into farmland. The presence of manure colloids may potentially intensify the SAs-pollution to soils and groundwater by colloid-facilitated transport. Transport of three SAs, sulfadiazine (SDZ), sulfamethoxypyridazine (SMPD), and sulfamoxole (SMOX), was investigated in saturated soil columns with and without manure colloids from sows and farrows, weaners, and fattening pigs. Experimental results showed that colloid-facilitated transport of SMOX was significant in the presence of manure colloids from fattening pigs with low C/N ratio, high SUVA280 nm and protein C, while manure colloids from sows and farrows and weaners had little effect on SMOX transport. In contrast, only retardation was observed for SDZ and SMPD when manure colloids were present. Breakthrough curves (BTCs) of colloids and SAs were replicated well by a newly developed numerical model that considers colloid-filtration theory, competitive kinetic sorption, and co-transport processes. Model results demonstrate that mobile colloids act as carriers for SMOX, while immobile colloids block SMOX from sorbing onto the soil. The low affinity of SMOX to sorb on immobile colloids prevents aggregation and also promotes SMOX's colloid-facilitated transport. Conversely, the high affinity of SDZ and SMPD to sorb on all types of immobile colloids retarded their transport. Thus, manure properties play a fundamental role in increasing the leaching risk of hydrophobic sulfonamides.

Plant uptake of 134Cs in relation to soil properties and time

International Nuclear Information System (INIS)

Massas, I.; Skarlou, V.; Haidouti, C.

2002-01-01

134 Cs uptake by sunflower and soybean plants grown on seven different soils and its relation to soil properties were studied in a greenhouse pot experiment. Soil in each pot was contaminated by dripping the 134 Cs in layers, and sunflower and soybean plants were grown for three and two successive periods, respectively. 134 Cs plant uptake was expressed as the transfer factor (TF) (Bq kg -1 plant/Bq kg -1 soil) and as the daily plant uptake (flux) (Bq pot -1 day -1 ) taking into account biomass production and growth time. For the studied soils and for both plants, no consistent trend of TFs with time was observed. The use of fluxes, in general, provided less variable results than TFs and stronger functional relationships. A negative power functional relationship between exchangeable potassium plus ammonium cations expressed as a percentage of cation exchange capacity of each soil and 134 Cs fluxes was found for the sunflower plants. A similar but weaker relationship was observed for soybean plants. The significant correlation between sunflower and soybean TFs and fluxes, as well as the almost identical highest/lowest 134 Cs flux ratios, in the studied soils, indicated a similar effect of soil characteristics on 134 Cs uptake by both plants. In all the studied soils, sunflower 134 Cs TFs and fluxes were significantly higher than the respective soybean values, while no significant difference was observed in potassium content and daily potassium plant uptake (flux) of the two plants

Phosphatase activity in relation to key litter and soil properties in mature subtropical forests in China.

Science.gov (United States)

Hou, Enqing; Chen, Chengrong; Wen, Dazhi; Liu, Xian

2015-05-15

Phosphatase-mediated phosphorus (P) mineralization is one of the critical processes in biogeochemical cycling of P and determines soil P availability in forest ecosystems; however, the regulation of soil phosphatase activity remains elusive. This study investigated the potential extracellular activities of acid phosphomonoesterase (AcPME) and phosphodiesterase (PDE) and how they were related to key edaphic properties in the L horizon (undecomposed litter) and F/H horizon (fermented and humified litter) and the underlying mineral soil at the 0-15cm depth in eight mature subtropical forests in China. AcPME activity decreased significantly in the order of F/H horizon>L horizon>mineral soil horizon, while the order for PDE activity was L horizon=F/H horizon>mineral soil horizon. AcPME (X axis) and PDE (Y axis) activities were positively correlated in all horizons with significantly higher slope in the L and F/H horizons than in the mineral soil horizon. Both AcPME and PDE activities were positively related to microbial biomass C, moisture content and water-holding capacity in the L horizon, and were positively related to soil C:P, N:P and C:N ratios and fine root (diameter≤2mm) biomass in the mineral soil horizon. Both enzyme activities were also interactively affected by forest and horizon, partly due to the interactive effect of forest and horizon on microbial biomass. Our results suggest that modulator(s) of the potential extracellular activity of phosphatases vary with horizon, depending on the relative C, P and water availability of the horizon. Copyright © 2015 Elsevier B.V. All rights reserved.

Soil microbiome responses to the short-term effects of Amazonian deforestation.

Science.gov (United States)

Navarrete, Acacio A; Tsai, Siu M; Mendes, Lucas W; Faust, Karoline; de Hollander, Mattias; Cassman, Noriko A; Raes, Jeroen; van Veen, Johannes A; Kuramae, Eiko E

2015-05-01

Slash-and-burn clearing of forest typically results in increase in soil nutrient availability. However, the impact of these nutrients on the soil microbiome is not known. Using next generation sequencing of 16S rRNA gene and shotgun metagenomic DNA, we compared the structure and the potential functions of bacterial community in forest soils to deforested soils in the Amazon region and related the differences to soil chemical factors. Deforestation decreased soil organic matter content and factors linked to soil acidity and raised soil pH, base saturation and exchangeable bases. Concomitant to expected changes in soil chemical factors, we observed an increase in the alpha diversity of the bacterial microbiota and relative abundances of putative copiotrophic bacteria such as Actinomycetales and a decrease in the relative abundances of bacterial taxa such as Chlamydiae, Planctomycetes and Verrucomicrobia in the deforested soils. We did not observe an increase in genes related to microbial nutrient metabolism in deforested soils. However, we did observe changes in community functions such as increases in DNA repair, protein processing, modification, degradation and folding functions, and these functions might reflect adaptation to changes in soil characteristics due to forest clear-cutting and burning. In addition, there were changes in the composition of the bacterial groups associated with metabolism-related functions. Co-occurrence microbial network analysis identified distinct phylogenetic patterns for forest and deforested soils and suggested relationships between Planctomycetes and aluminium content, and Actinobacteria and nitrogen sources in Amazon soils. The results support taxonomic and functional adaptations in the soil bacterial community following deforestation. We hypothesize that these microbial adaptations may serve as a buffer to drastic changes in soil fertility after slash-and-burning deforestation in the Amazon region. © 2015 John Wiley & Sons Ltd.

Introduction of digital soil mapping techniques for the nationwide regionalization of soil condition in Hungary; the first results of the DOSoReMI.hu (Digital, Optimized, Soil Related Maps and Information in Hungary) project

Science.gov (United States)

Pásztor, László; Laborczi, Annamária; Szatmári, Gábor; Takács, Katalin; Bakacsi, Zsófia; Szabó, József; Dobos, Endre

2014-05-01

Due to the former soil surveys and mapping activities significant amount of soil information has accumulated in Hungary. Present soil data requirements are mainly fulfilled with these available datasets either by their direct usage or after certain specific and generally fortuitous, thematic and/or spatial inference. Due to the more and more frequently emerging discrepancies between the available and the expected data, there might be notable imperfection as for the accuracy and reliability of the delivered products. With a recently started project (DOSoReMI.hu; Digital, Optimized, Soil Related Maps and Information in Hungary) we would like to significantly extend the potential, how countrywide soil information requirements could be satisfied in Hungary. We started to compile digital soil related maps which fulfil optimally the national and international demands from points of view of thematic, spatial and temporal accuracy. The spatial resolution of the targeted countrywide, digital, thematic maps is at least 1:50.000 (approx. 50-100 meter raster resolution). DOSoReMI.hu results are also planned to contribute to the European part of GSM.net products. In addition to the auxiliary, spatial data themes related to soil forming factors and/or to indicative environmental elements we heavily lean on the various national soil databases. The set of the applied digital soil mapping techniques is gradually broadened incorporating and eventually integrating geostatistical, data mining and GIS tools. In our paper we will present the first results. - Regression kriging (RK) has been used for the spatial inference of certain quantitative data, like particle size distribution components, rootable depth and organic matter content. In the course of RK-based mapping spatially segmented categorical information provided by the SMUs of Digital Kreybig Soil Information System (DKSIS) has been also used in the form of indicator variables. - Classification and regression trees (CART) were

Mineralogy of soils from two continental-scale transects across the United States and Canada and its relation to soil geochemistry and climate

Science.gov (United States)

Eberl, D.D.; Smith, D.B.

2009-01-01

Quantitative mineralogy correlates with major-, minor- and trace-element chemistry for 387 samples of A-horizon and deeper soils collected from east-west and north-south transects across the USA and Canada, where the deeper soils were collected beneath the A-horizon samples. Concentrations of the major elements correlate with specific mineral phases. Minor- and trace-element concentrations correlate with the same phases as the major elements with which they share similar geochemical behavior. Concentrations of quartz and feldspar correlate with precipitation trends east of the Rocky Mountains, and are independent of the underlying rock type and age, indicating that the weathering of soils in this region may have reached a steady-state mineralogy. Other trends in mineralogy relate to physiographic province. The combination of quantitative mineralogy and chemical analysis yields a much richer portrait of soils than can be gained from chemistry alone, because the origins of chemical trends and the chemical availability of specific elements are related to mineralogy.

Relations between soil factors and herbage yields of natural ...

African Journals Online (AJOL)

Keywords: Cation exchange capacity; Correlation matrix; Nitrogen supplies; Root mass; Root measurements; Soil acidity; Soil variables; Soil water content; Soil water measurements; Yield measurements; nitrogen supply; ph; herbage yield; grassland; soils; productivity; soil depth; dry matter yield; grasses; water content; n; ...

Radiocesium sorption in relation to clay mineralogy of paddy soils in Fukushima, Japan

Energy Technology Data Exchange (ETDEWEB)

Nakao, Atsushi, E-mail: na_4_ka_triplochiton@kpu.ac.jp [Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Hangi-cho 1-5, Shimogamo, Sakyo-ku, Kyoto 606-8522 (Japan); Ogasawara, Sho [Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Hangi-cho 1-5, Shimogamo, Sakyo-ku, Kyoto 606-8522 (Japan); Sano, Oki; Ito, Toyoaki [Field Science Center, Graduate School of Agricultural Science, Tohoku University, Naruko-Onsen 232-3, Osaki, Miyagi 989-6711 (Japan); Yanai, Junta [Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Hangi-cho 1-5, Shimogamo, Sakyo-ku, Kyoto 606-8522 (Japan)

2014-01-01

Relationships between Radiocesium Interception Potential (RIP) and mineralogical characteristics of the clay fraction isolated from 97 paddy soils (Hama-dori, n = 25; Naka-dori, n = 36; Aizu, n = 36) in Fukushima Prefecture, Japan were investigated to clarify the mineralogical factors controlling the {sup 137}Cs retention ability of soils (half-life 30.1 y). Of all the fission products released by the Fukushima accident, {sup 137}Cs is the most important long-term contributor to the environmental contamination. The RIP, a quantitative index of the {sup 137}Cs retention ability, was determined for the soil clays. The composition of clay minerals in the soil clays was estimated from peak areas obtained using X-ray diffraction (XRD) analyses. The predominant clay mineral was smectite in soils from Hama-dori and Aizu, while this was variable for those from Naka-dori. Native K content of the soil clays was found to be an indicator of the amount of micaceous minerals. The average RIP for the 97 soil clays was 7.8 mol kg{sup −1}, and ranged from 2.4 mol kg{sup −1} to 19.4 mol kg{sup −1}. The RIP was significantly and positively correlated with native K content for each of the geographical regions, Hama-dori (r = 0.76, p < 0.001), Naka-dori (r = 0.43, p < 0.05), and Aizu (r = 0.76, P < 0.001), while it was not related to the relative abundance of smectite. The linear relationship between RIP and native K content not only indicate a large contribution of micaceous minerals to the {sup 137}Cs retention ability of the soil clays, but also could be used to predict the {sup 137}Cs retention ability of soil clays for other paddy fields in Fukushima and other areas. - Highlights: • RIP was measured for 97 paddy soils from Fukushima to assess {sup 137}Cs retention ability. • The dominant clay mineral was smectite, but this did not control RIP. • RIP was positively correlated with native K content. • Micaceous minerals were found to control the {sup 137}Cs retention

Impact of long-term land application of broiler litter on environmentally related soil properties

Energy Technology Data Exchange (ETDEWEB)

Kingery, W.L. [Mississippi State Univ., MS (United States); Wood, C.W.; Mullins, G.L. [Auburn Univ., AL (United States)] [and others

1994-01-01

The largest portion of Alabama`s rapidly growing poultry industry is geographically concentrated in the Sand Mountain region of northern Alabama. The result is that large amounts of waste are applied to relatively small areas of agricultural soils. A study was conducted to determine the effects of long-term broiler waste (litter) application on environmentally related soil conditions in the region. The region has an average annual rainfall of 1325 mm, which is evenly distributed throughout the year, a thermic temperature regime, and soils in the region are of the Ultisol order. In each of four major broiler-producing counties, three pairs of sites consisting of long-term (15-28 yr) littered and nonlittered fields on matching soil series and maintained under perennial tall fescue (Festuca arundinacea Schreb.) were sampled. Soil cores were taken to 3 m or lithic contact and depth-incremented samples (0-15, 15-30, and each subsequent 30-cm interval) were analyzed for organic C, total N, NO{sub 3}-N, pH, electrical conductivity, and acid-extractable P, K, Ca, Mg, Co, and Zn. Litter application increased organic C and total N to depths of 15 and 30 cm, respectively, as compared with nonlittered soils, whereas pH was 0.5 units higher to a depth of 60 cm under littered soils. Significant accumulation of NO{sub 3}N was found in littered soils to or near bedrock. Extractable P concentrations in littered soils were more than six times greater than in nonlittered soils to a depth of 60 cm. Elevated levels of extractable K, Ca, and Mg to depths greater than 60 cm also were found as a result of long-term litter use. Extractable Cu and Zn had accumulated in littered soils to a depth of 45 cm. These findings indicate that long-term land application of broiler litter, at present rates, has altered soil chemical conditions and has created a potential for adverse environmental impacts in the Sand Mountain region of Alabama. 43 refs., 6 figs., 3 tabs.

Is there a relationship between earthworm energy reserves and metal availability after exposure to field-contaminated soils?

International Nuclear Information System (INIS)

Beaumelle, Léa; Lamy, Isabelle; Cheviron, Nathalie; Hedde, Mickaël

2014-01-01

Generic biomarkers are needed to assess environmental risks in metal polluted soils. We assessed the strength of the relationship between earthworm energy reserves and metal availability under conditions of cocktail of metals at low doses and large range of soil parameters. Aporrectodea caliginosa was exposed in laboratory to a panel of soils differing in Cd, Pb and Zn total and available (CaCl 2 and EDTA-extractable) concentrations, and in soil texture, pH, CEC and organic-C. Glycogen, protein and lipid contents were recorded in exposed worms. Glycogen contents were not linked to the explaining variables considered. Variable selection identified CaCl 2 extractable metals concentrations and soil texture as the main factors affecting protein and lipid contents. The results showed opposite effects of Pb and Zn, high inter-individual variability of biomarkers and weak relationships with easily extractable metals. Our results support the lack of genericity of energy reserves in earthworms exposed to field-contaminated soils. - Highlights: • Energy reserves were quantified in earthworms exposed to a wide panel of field soils. • Protein and lipid contents were related to CaCl 2 extractable metals. • Soil texture affected protein and lipid contents. • Energy reserves were highly variable inter-individually. - Earthworm energy reserves response to low doses of available metals is not generic

Modification of an Existing In vitro Method to Predict Relative Bioavailable Arsenic in Soils

Science.gov (United States)

The soil matrix can sequester arsenic (As) and reduces its exposure by soil ingestion. In vivo dosing studies and in vitro gastrointestinal (IVG) methods have been used to predict relative bioavailable (RBA) As. Originally, the Ohio State University (OSU-IVG) method predicted R...

Osmotin, a Pathogenesis-Related Protein

Czech Academy of Sciences Publication Activity Database

Viktorová, J.; Krásný, Lukáš; Kamlar, M.; Nováková, M.; Macková, M.; Macek, T.

2012-01-01

Roč. 13, č. 7 (2012), s. 672-681 ISSN 1389-2037 Grant - others:GA ČR(CZ) GAP501/11/1654; GA ČR(CZ) GA522/09/1693 Program:GA; GA Institutional support: RVO:61388971 Keywords : osmotin * pathogenesis-related proteins * antifungal activity Subject RIV: CE - Biochemistry Impact factor: 2.326, year: 2012

An Enzymatic Treatment of Soil-Bound Prions Effectively Inhibits Replication ▿

Science.gov (United States)

Saunders, Samuel E.; Bartz, Jason C.; Vercauteren, Kurt C.; Bartelt-Hunt, Shannon L.

2011-01-01

Chronic wasting disease (CWD) and scrapie can be transmitted through indirect environmental routes, possibly via soil, and a practical decontamination strategy for prion-contaminated soil is currently unavailable. In the laboratory, an enzymatic treatment under environmentally relevant conditions (22°C, pH 7.4) can degrade soil-bound PrPSc below the limits of Western blot detection. We developed and used a quantitative serial protein misfolding cyclic amplification (PMCA) protocol to characterize the amplification efficiency of treated soil samples relative to controls of known infectious titer. Our results suggest large (104- to >106-fold) decreases in soil-bound prion infectivity following enzyme treatment, demonstrating that a mild enzymatic treatment could effectively reduce the risk of prion disease transmission via soil or other environmental surfaces. PMID:21571886

The toxicity of different lead salts to Enchytraeus crypticus in relation to bioavailability in soil.

Science.gov (United States)

Zhang, Lulu; Van Gestel, Cornelis A M

2017-08-01

The present study aimed to assess the bioavailability and toxicity of lead nitrate and lead chloride to Enchytraeus crypticus in a natural standard soil. Worms were exposed to Pb-spiked soil for 21 d, and survival and reproduction were related to total, 0.01 M CaCl 2 -extractable, and porewater Pb concentrations in the soil and internal concentrations in the surviving animals. The Pb availability for Pb(NO 3 ) 2 and PbCl 2 was similar, as confirmed by Langmuir and Freundlich isotherms. The Pb concentrations in surviving worms increased with increasing Pb concentrations in the soil and did not differ for the 2 Pb salts. Lead was toxic to E. crypticus at median lethal concentrations (LC50s) of 543 and 779 mg Pb/kg dry soil and median effect concentrations (EC50s) of 189 and 134 mg Pb/kg dry soil, for Pb(NO 3 ) 2 and PbCl 2 , respectively. Mortality of E. crypticus was related to internal Pb concentrations in the worms rather than to total or available Pb concentrations in the soil, whereas reproduction toxicity was better explained from Pb concentrations in 0.01 M CaCl 2 extracts or porewater of the test soil than from total Pb concentrations in the soil or Pb concentrations in the worms. Overall, the bioavailability and toxicity of Pb(NO 3 ) 2 and PbCl 2 to E. crypticus in LUFA 2.2 soil did not differ. Environ Toxicol Chem 2017;36:2083-2091. © 2017 SETAC. © 2017 SETAC.

Contribution of soil electric resistivity measurements to the studies on soil/grapevine water relations

Directory of Open Access Journals (Sweden)

Etienne Goulet

2006-06-01

Full Text Available The classical techniques that allow to quantify the soil water status such as the gravimetric method or the use of neutrons probes do not give access to the volume of soil explored by the plant root system. On the contrary, electric tomography can be used to have a global vision on the water exchange area between soil and plant. The measurement of soil electric resistivity, as a non destructive, spatially integrative technique, has recently been introduced into viticulture. The use of performing equipment and adapted software allows for rapid data processing and gives the possibility to spatialize the variations of soil texture or humidity in two or three dimensions. Soil electric resistivity has been tested for the last three years at the Experimental Unit on Grapevine and Vine, INRA, Angers, France, to study the water supply to the vine in different “terroir” conditions. Resistivity measurements were carried out with the resistivity meter Syscal R1+ (Iris Instruments, France equipped with 21 electrodes. Those electrodes were lined up on the soil surface in a direction perpendiculary to 5 grapevine rows with an electrode spacing of 0.5 m. and a dipole-dipole arrangement. Resistivity measurements were performed on the same place at different times in order to study soil moisture variations. This experimental set up has permitted to visualise the soil stratification and individualize some positive electric anomalies corresponding to preferential drying ; this desiccation could be attributed to grapevine root activity. The soil bulk subject to the water up-take could be defined more precisely and in some types of soil, available water may even be quantified. Terroir effect on grapevine root activity has also been shown up on two different experimental parcels through electric tomography and first results indicate that it is possible to monitor the effects of soil management (inter-row grassing or different rootstocks on the water supply to the

Aspect-related Vegetation Differences Amplify Soil Moisture Variability in Semiarid Landscapes

Science.gov (United States)

Yetemen, O.; Srivastava, A.; Kumari, N.; Saco, P. M.

2017-12-01

Soil moisture variability (SMV) in semiarid landscapes is affected by vegetation, soil texture, climate, aspect, and topography. The heterogeneity in vegetation cover that results from the effects of microclimate, terrain attributes (slope gradient, aspect, drainage area etc.), soil properties, and spatial variability in precipitation have been reported to act as the dominant factors modulating SMV in semiarid ecosystems. However, the role of hillslope aspect in SMV, though reported in many field studies, has not received the same degree of attention probably due to the lack of extensive large datasets. Numerical simulations can then be used to elucidate the contribution of aspect-driven vegetation patterns to this variability. In this work, we perform a sensitivity analysis to study on variables driving SMV using the CHILD landscape evolution model equipped with a spatially-distributed solar-radiation component that couples vegetation dynamics and surface hydrology. To explore how aspect-driven vegetation heterogeneity contributes to the SMV, CHILD was run using a range of parameters selected to reflect different scenarios (from uniform to heterogeneous vegetation cover). Throughout the simulations, the spatial distribution of soil moisture and vegetation cover are computed to estimate the corresponding coefficients of variation. Under the uniform spatial precipitation forcing and uniform soil properties, the factors affecting the spatial distribution of solar insolation are found to play a key role in the SMV through the emergence of aspect-driven vegetation patterns. Hence, factors such as catchment gradient, aspect, and latitude, define water stress and vegetation growth, and in turn affect the available soil moisture content. Interestingly, changes in soil properties (porosity, root depth, and pore-size distribution) over the domain are not as effective as the other factors. These findings show that the factors associated to aspect-related vegetation

Structural studies of human glioma pathogenesis-related protein 1

Energy Technology Data Exchange (ETDEWEB)

Asojo, Oluwatoyin A., E-mail: oasojo@unmc.edu [College of Medicine, Nebraska Medical Center, Omaha, NE 68198-6495 (United States); Koski, Raymond A.; Bonafé, Nathalie [L2 Diagnostics LLC, 300 George Street, New Haven, CT 06511 (United States); College of Medicine, Nebraska Medical Center, Omaha, NE 68198-6495 (United States)

2011-10-01

Structural analysis of a truncated soluble domain of human glioma pathogenesis-related protein 1, a membrane protein implicated in the proliferation of aggressive brain cancer, is presented. Human glioma pathogenesis-related protein 1 (GLIPR1) is a membrane protein that is highly upregulated in brain cancers but is barely detectable in normal brain tissue. GLIPR1 is composed of a signal peptide that directs its secretion, a conserved cysteine-rich CAP (cysteine-rich secretory proteins, antigen 5 and pathogenesis-related 1 proteins) domain and a transmembrane domain. GLIPR1 is currently being investigated as a candidate for prostate cancer gene therapy and for glioblastoma targeted therapy. Crystal structures of a truncated soluble domain of the human GLIPR1 protein (sGLIPR1) solved by molecular replacement using a truncated polyalanine search model of the CAP domain of stecrisp, a snake-venom cysteine-rich secretory protein (CRISP), are presented. The correct molecular-replacement solution could only be obtained by removing all loops from the search model. The native structure was refined to 1.85 Å resolution and that of a Zn{sup 2+} complex was refined to 2.2 Å resolution. The latter structure revealed that the putative binding cavity coordinates Zn{sup 2+} similarly to snake-venom CRISPs, which are involved in Zn{sup 2+}-dependent mechanisms of inflammatory modulation. Both sGLIPR1 structures have extensive flexible loop/turn regions and unique charge distributions that were not observed in any of the previously reported CAP protein structures. A model is also proposed for the structure of full-length membrane-bound GLIPR1.

Predicting oral relative bioavailability of arsenic in soil from in vitro bioaccessibility

Science.gov (United States)

Several investigations have been conducted to develop in vitro bioaccessibility (IVBA) assays that reliably predict in vivo oral relative bioavailability (RBA) of arsenic (As). This study describes a meta-regression model relating soil As RBA and IVBA that is based upon data comb...

Relating soil geochemical properties to arsenic bioaccessibility

Data.gov (United States)

U.S. Environmental Protection Agency — soil element total concentration, soil pH and arsenic bioaccessibility values. This dataset is not publicly accessible because: EPA cannot release personally...

Copper bioavailability and extractability as related to chemical properties of contaminated soils from a vine-growing area

International Nuclear Information System (INIS)

Chaignon, V.; Sanchez-Neira, I.; Herrmann, P.; Jaillard, B.; Hinsinger, P.

2003-01-01

Root Cu concentration is a good indicator of soil Cu bioavailability. - Vineyard soils have been contaminated by Cu as a consequence of the long-term use of Cu salts as fungicides against mildew. This work aimed at identifying which soil parameters were the best related to Cu bioavailability, as assessed by measuring the concentrations of Cu in shoots and roots of tomato cropped (in lab conditions) over a range of 29 (24 calcareous and five acidic) Cu-contaminated topsoils from a vine-growing area (22-398 mg Cu kg -1 ). Copper concentrations in tomato shoots remained in the adequate range and were independent of soil properties and soil Cu content. Conversely, strong, positive correlations were found between root Cu concentration, total soil Cu, EDTA- or K-pyrophosphate-extractable Cu and organic C contents in the 24 calcareous soils, suggesting a prominent role of organic matter in the retention and bioavailability of Cu. Such relations were not observed when including the five acidic soils in the investigated population, suggesting a major pH effect. Root Cu concentration appeared as a much more sensitive indicator of soil Cu bioavailability than shoot Cu concentration. Simple extractions routinely used in soil testing procedures (total and EDTA-extractable Cu) were adequate indicators of Cu bioavailability for the investigated calcareous soils, but not when different soil types were considered (e.g. acidic versus calcareous soils)

Enzyme Sorption onto Soil and Biocarbon Amendments Alters Catalytic Capacity and Depends on the Specific Protein and pH

Science.gov (United States)

Foster, E.; Fogle, E. J.; Cotrufo, M. F.

2017-12-01

Enzymes catalyze biogeochemical reactions in soils and play a key role in nutrient cycling in agricultural systems. Often, to increase soil nutrients, agricultural managers add organic amendments and have recently experimented with charcoal-like biocarbon products. These amendments can enhance soil water and nutrient holding capacity through increasing porosity. However, the large surface area of the biocarbon has the potential to sorb nutrients and other organic molecules. Does the biocarbon decrease nutrient cycling through sorption of enzymes? In a laboratory setting, we compared the interaction of two purified enzymes β-glucosidase and acid phosphatase with a sandy clay loam and two biocarbons. We quantified the sorbed enzymes at three different pHs using a Bradford protein assay and then measured the activity of the sorbed enzyme via high-throughput fluorometric analysis. Both sorption and activity depended upon the solid phase, pH, and specific enzyme. Overall the high surface area biocarbon impacted the catalytic capacity of the enzymes more than the loam soil, which may have implications for soil nutrient management with these organic amendments.

Association of water spectral indices with plant and soil water relations in contrasting wheat genotypes.

Science.gov (United States)

Gutierrez, Mario; Reynolds, Matthew P; Klatt, Arthur R

2010-07-01

Spectral reflectance indices can be used to estimate the water status of plants in a rapid, non-destructive manner. Water spectral indices were measured on wheat under a range of water-deficit conditions in field-based yield trials to establish their relationship with water relations parameters as well as available volumetric soil water (AVSW) to indicate soil water extraction patterns. Three types of wheat germplasm were studied which showed a range of drought adaptation; near-isomorphic sister lines from an elite/elite cross, advanced breeding lines, and lines derived from interspecific hybridization with wild relatives (synthetic derivative lines). Five water spectral indices (one water index and four normalized water indices) based on near infrared wavelengths were determined under field conditions between the booting and grain-filling stages of crop development. Among all water spectral indices, one in particular, which was denominated as NWI-3, showed the most consistent associations with water relations parameters and demonstrated the strongest associations in all three germplasm sets. NWI-3 showed a strong linear relationship (r(2) >0.6-0.8) with leaf water potential (psi(leaf)) across a broad range of values (-2.0 to -4.0 MPa) that were determined by natural variation in the environment associated with intra- and inter-seasonal affects. Association observed between NWI-3 and canopy temperature (CT) was consistent with the idea that genotypes with a better hydration status have a larger water flux (increased stomatal conductance) during the day. NWI-3 was also related to soil water potential (psi(soil)) and AVSW, indicating that drought-adapted lines could extract more water from deeper soil profiles to maintain favourable water relations. NWI-3 was sufficiently sensitive to detect genotypic differences (indicated by phenotypic and genetic correlations) in water status at the canopy and soil levels indicating its potential application in precision

Relationships between nutrient-related plant traits and combinations of soil N and P fertility measures.

Science.gov (United States)

Fujita, Yuki; van Bodegom, Peter M; Witte, Jan-Philip M

2013-01-01

Soil fertility and nutrient-related plant functional traits are in general only moderately related, hindering the progress in trait-based prediction models of vegetation patterns. Although the relationships may have been obscured by suboptimal choices in how soil fertility is expressed, there has never been a systematic investigation into the suitability of fertility measures. This study, therefore, examined the effect of different soil fertility measures on the strength of fertility-trait relationships in 134 natural plant communities. In particular, for eight plot-mean traits we examined (1) whether different elements (N or P) have contrasting or shared influences, (2) which timescale of fertility measures (e.g. mineralization rates for one or five years) has better predictive power, and (3) if integrated fertility measures explain trait variation better than individual fertility measures. Soil N and P had large mutual effects on leaf nutrient concentrations, whereas they had element-specific effects on traits related to species composition (e.g. Grime's CSR strategy). The timescale of fertility measures only had a minor impact on fertility-trait relationships. Two integrated fertility measures (one reflecting overall fertility, another relative availability of soil N and P) were related significantly to most plant traits, but were not better in explaining trait variation than individual fertility measures. Using all fertility measures together, between-site variations of plant traits were explained only moderately for some traits (e.g. 33% for leaf N concentrations) but largely for others (e.g. 66% for whole-canopy P concentration). The moderate relationships were probably due to complex regulation mechanisms of fertility on traits, rather than to a wrong choice of fertility measures. We identified both mutual (i.e. shared) and divergent (i.e. element-specific and stoichiometric) effects of soil N and P on traits, implying the importance of explicitly

The relation between forest structure and soil burn severity

Science.gov (United States)

Theresa B. Jain; Russell T. Graham; David S. Pilliod

2006-01-01

A study funded through National Fire Plan evaluates the relation between pre-wildfire forest structure and post-wildfire soil burn severity across three forest types: dry, moist, and cold forests. Over 73 wildfires were sampled in Idaho, Oregon, Montana, Colorado, and Utah, which burned between 2000 and 2003. Because of the study’s breadth, the results are applicable...

The Soil Characteristic Curve at Low Water Contents: Relations to Specific Surface Area and Texture

DEFF Research Database (Denmark)

Resurreccion, Augustus; Møldrup, Per; Schjønning, Per

Accurate description of the soil-water retention curve (SWRC) at low water contents is important for simulating water dynamics, plant-water relations, and microbial processes in surface soil. Soil-water retention at soil-water matric potential of less than -10 MPa, where adsorptive forces dominate...... that measurements by traditional pressure plate apparatus generally overestimated water contents at -1.5 MPa (plant wilting point). The 41 soils were classified into four textural classes based on the so-called Dexter index n (= CL/OC), and the Tuller-Or (TO) general scaling model describing the water film...... thickness at a given soil-water matric potential ( 10, the estimated SA from the dry soil-water retention was in good agreement with the SA measured using ethylene glycol monoethyl ether (SA_EGME). A strong relationship between the ratio...

Physiological response and differential leaf proteome pattern in the European invasive Asteraceae Solidago canadensis colonizing a former cokery soil.

Science.gov (United States)

Immel, Françoise; Renaut, Jenny; Masfaraud, Jean-François

2012-02-02

Derelict contaminated sites are often colonized spontaneously by plant species leading to a vegetal cover thought to limit particle dispersal and polluted water infiltration. Those plants must cope with soil pollutants through tolerance mechanisms that are not yet fully understood. Here, we focused our attention on a particular Asteraceae plant, Solidago canadensis, considered as invasive in Europe. S. canadensis spontaneously growing on either polluted (NM soil) or control soils dumped on experimental plots were studied for their physiological status, oxidative stress and 2D-DIGE of leaf extracts. S. canadensis tolerance to soil pollutants was demonstrated since growth rates, allocation to reproduction ratios and Fv/Fm ratios were similar in plants from control and NM soil. At the cell level, the catalase activity level was increased in plants collected on NM soil while lipoperoxidation was unaffected. Also, the leaf proteomic study revealed thirty down-regulated and sixty-six up-regulated proteins. Abundances of proteins related to oxidative stress, carbohydrate metabolism, ion transport were mainly up-regulated while those of proteins involved in cell cycle and transcription/translation were mostly down-regulated. Proteins associated to protein metabolism were either down- or up-regulated. Considered altogether, we highlighted that S. canadensis exhibited a complex proteome response when experiencing a multicontaminated soil. Copyright © 2011 Elsevier B.V. All rights reserved.

The role of forest stand density in controlling soil erosion: implications to sediment-related disasters in Japan.

Science.gov (United States)

Razafindrabe, Bam H N; He, Bin; Inoue, Shoji; Ezaki, Tsugio; Shaw, Rajib

2010-01-01

The role of forest stand density in controlling soil erosion was investigated in Ehime Prefecture, Japan. The main objective was to compare soil erosion under different forest conditions including forest type, species composition, and stand density as influenced by thinning operations. Relative yield index (Ry) was used as an indicator of stand density to reflect the degree of management operations in the watershed. Eleven treatments were established based on the above forest conditions. Soil loss was collected in each of the 11 treatments after each rainfall event for a period of 1 year. The paper presents summary data on soil loss as affected by forest conditions and rainfall patterns. Findings showed that an appropriate forest management operation, which can be insured by stand density control, is needed to reduce soil loss. The present study plays an important role in clarifying technical processes related to soil erosion, while it helps linking these elements to current Japanese forestry issues and bringing new inputs to reducing sediment-related disasters in Japan.

Multivariate analysis of selected metals in tannery effluents and related soil.

Science.gov (United States)

Tariq, Saadia R; Shah, Munir H; Shaheen, N; Khalique, A; Manzoor, S; Jaffar, M

2005-06-30

Effluent and relevant soil samples from 38 tanning units housed in Kasur, Pakistan, were obtained for metal analysis by flame atomic absorption spectrophotometric method. The levels of 12 metals, Na, Ca, K, Mg, Fe, Mn, Cr, Co, Cd, Ni, Pb and Zn were determined in the two media. The data were evaluated towards metal distribution and metal-to-metal correlations. The study evidenced enhanced levels of Cr (391, 16.7 mg/L) and Na (25,519, 9369 mg/L) in tannery effluents and relevant soil samples, respectively. The effluent versus soil trace metal content relationship confirmed that the effluent Cr was strongly correlated with soil Cr. For metal source identification the techniques of principal component analysis, and cluster analysis were applied. The principal component analysis yielded two factors for effluents: factor 1 (49.6% variance) showed significant loading for Ca, Fe, Mn, Cr, Cd, Ni, Pb and Zn, referring to a tanning related source for these metals, and factor 2 (12.6% variance) with higher loadings of Na, K, Mg and Co, was associated with the processes during the skin/hide treatment. Similarly, two factors with a cumulative variance of 34.8% were obtained for soil samples: factor 1 manifested the contribution from Mg, Mn, Co, Cd, Ni and Pb, which though soil-based is basically effluent-derived, while factor 2 was found associated with Na, K, Ca, Cr and Zn which referred to a tannery-based source. The dendograms obtained from cluster analysis, also support the observed results. The study exhibits a gross pollution of soils with Cr at levels far exceeding the stipulated safe limit laid down for tannery effluents.

Relating soil solution Zn concentration to diffusive gradients in thin films measurements in contaminated soils.

Science.gov (United States)

Degryse, Fien; Smolders, Erik; Oliver, Ian; Zhang, Hao

2003-09-01

The technique of diffusive gradients in thin films (DGT) has been suggested to sample an available fraction of metals in soil. The objectives of this study were to compare DGT measurements with commonly measured fractions of Zn in soil, viz, the soil solution concentration and the total Zn concentration. The DGT technique was used to measure fluxes and interfacial concentrations of Zn in three series of field-contaminated soils collected in transects toward galvanized electricity pylons and in 15 soils amended with ZnCl2 at six rates. The ratio of DGT-measured concentration to pore water concentration of Zn, R, varied between 0.02 and 1.52 (mean 0.29). This ratio decreased with decreasing distribution coefficient, Kd, of Zn in the soil, which is in agreement with the predictions of the DGT-induced fluxes in soils (DIFS) model. The R values predicted with the DIFS model were generally larger than the observed values in the ZnCl2-amended soils at the higher Zn rates. A modification of the DIFS model indicated that saturation of the resin gel was approached in these soils, despite the short deployment times used (2 h). The saturation of the resin with Zn did not occur in the control soils (no Zn salt added) or the field-contaminated soils. Pore water concentration of Zn in these soils was predicted from the DGT-measured concentration and the total Zn content. Predicted values and observations were generally in good agreement. The pore water concentration was more than 5 times underpredicted for the most acid soil (pH = 3) and for six other soils, for which the underprediction was attributed to the presence of colloidal Zn in the soil solution.

The influence of use-related, environmental, and managerial factors on soil loss from recreational trails

Science.gov (United States)

Olive, Nathaniel D.; Marion, Jeffrey L.

2009-01-01

Recreational uses of unsurfaced trails inevitably result in their degradation, with the type and extent of resource impact influenced by factors such as soil texture, topography, climate, trail design and maintenance, and type and amount of use. Of particular concern, the loss of soil through erosion is generally considered a significant and irreversible form of trail impact. This research investigated the influence of several use-related, environmental, and managerial factors on soil loss on recreational trails and roads at Big South Fork National River and Recreation Area, a unit of the U.S. National Park Service. Regression modeling revealed that trail position, trail slope alignment angle, grade, water drainage, and type of use are significant determinants of soil loss. The introduction of individual and groups of variables into a series of regression models provides improved understanding and insights regarding the relative influence of these variables, informing the selection of more effective trail management actions. Study results suggest that trail erosion can be minimized by avoiding “fall-line” alignments, steep grades, and valley-bottom alignments near streams, installing and maintaining adequate densities of tread drainage features, applying gravel to harden treads, and reducing horse and all-terrain vehicle use or restricting them to more resistant routes.This research also sought to develop a more efficient Variable Cross-Sectional Area method for assessing soil loss on trails. This method permitted incorporation of CSA measures in a representative sampling scheme applied to a large (24%) sample of the park's 526 km trail system. The variety of soil loss measures derived from the Variable CSA method, including extrapolated trail-wide soil loss estimates, permit an objective quantification of soil erosion on recreational trails and roads. Such data support relational analyses to increase understanding of trail degradation, and long

The influence of use-related, environmental, and managerial factors on soil loss from recreational trails.

Science.gov (United States)

Olive, Nathaniel D; Marion, Jeffrey L

2009-03-01

Recreational uses of unsurfaced trails inevitably result in their degradation, with the type and extent of resource impact influenced by factors such as soil texture, topography, climate, trail design and maintenance, and type and amount of use. Of particular concern, the loss of soil through erosion is generally considered a significant and irreversible form of trail impact. This research investigated the influence of several use-related, environmental, and managerial factors on soil loss on recreational trails and roads at Big South Fork National River and Recreation Area, a unit of the U.S. National Park Service. Regression modeling revealed that trail position, trail slope alignment angle, grade, water drainage, and type of use are significant determinants of soil loss. The introduction of individual and groups of variables into a series of regression models provides improved understanding and insights regarding the relative influence of these variables, informing the selection of more effective trail management actions. Study results suggest that trail erosion can be minimized by avoiding "fall-line" alignments, steep grades, and valley-bottom alignments near streams, installing and maintaining adequate densities of tread drainage features, applying gravel to harden treads, and reducing horse and all-terrain vehicle use or restricting them to more resistant routes. This research also sought to develop a more efficient Variable Cross-Sectional Area method for assessing soil loss on trails. This method permitted incorporation of CSA measures in a representative sampling scheme applied to a large (24%) sample of the park's 526 km trail system. The variety of soil loss measures derived from the Variable CSA method, including extrapolated trail-wide soil loss estimates, permit an objective quantification of soil erosion on recreational trails and roads. Such data support relational analyses to increase understanding of trail degradation, and long-term monitoring of

Termite activity in relation to natural grassland soil attributes

NARCIS (Netherlands)

Kaschuk, G.; Pires Santos, J.C.; Almeida, J.A.; Sinhorati, D.S.; Berton-Junior, J.F.

2006-01-01

Soil-feeding termites transport soil for mound building, and this process can affect soil characteristics. To verify the influence of soil termite activity on soil characteristics, samples were collected from top, bottom and center of termite mounds, and of the adjacent area, to assess chemical and

Enzymatic Digestion of Chronic Wasting Disease Prions Bound to Soil

Science.gov (United States)

SAUNDERS, SAMUEL E.; BARTZ, JASON C.; VERCAUTEREN, KURT C.; BARTELT-HUNT, SHANNON L.

2010-01-01

Chronic wasting disease (CWD) and sheep scrapie can be transmitted via indirect environmental routes, and it is known that soil can serve as a reservoir of prion infectivity. Given the strong interaction between the prion protein (PrP) and soil, we hypothesized that binding to soil enhances prion resistance to enzymatic digestion, thereby facilitating prion longevity in the environment and providing protection from host degradation. We characterized the performance of a commercially available subtilisin enzyme, the Prionzyme, to degrade soil-bound and unbound CWD and HY TME PrP as a function of pH, temperature, and treatment time. The subtilisin enzyme effectively degraded PrP adsorbed to a wide range of soils and soil minerals below the limits of detection. Signal loss occurred rapidly at high pH (12.5) and within 7 d under conditions representative of the natural environment (pH 7.4, 22°C). We observed no apparent difference in enzyme effectiveness between bound and unbound CWD PrP. Our results show that although adsorbed prions do retain relative resistance to enzymatic digestion compared with other brain homogenate proteins, they can be effectively degraded when bound to soil. Our results also suggest a topical application of a subtilisin enzyme solution may be an effective decontamination method to limit disease transmission via environmental ‘hot spots’ of prion infectivity. PMID:20450190

Physico-chemical findings related to the resilience of different soils ...

African Journals Online (AJOL)

As part of an interdisciplinary study on Sustainable Agriculture in semiarid Areas (SASA) in south-central Tanzania, soils from five different locations were investigated for their mineralogical composition and physico-chemical characteristics in order to determine their resilience in relation to land use. The results of the ...

Electro-chemistry of soil formation. VI. Atmospheric salts in relation to soil and peat formation and plant composition

Energy Technology Data Exchange (ETDEWEB)

Mattson, S; Sandberg, G; Terning, P E

1944-01-01

The Ca/Mg ratios have been determined in the Ramna bog, in the Unden and Annerstad podzol profile series, and in the Dala brown earth series. A number of plant species from each locality have been included. The more ombrogenic the formation, the lower the Ca/Mg ratios. An application of the Donnan equilibrium leads to the conclusion that the saturation with bases may be considerable in ombrogenic peat, whereas the saturation of excessively leached mineral soils must be very small. The latter must, like all weak or unsaturated soil acidoids in general, contain a relatively high proportion of exchangeable alkali cations.

Biosensors for detection of mercury in contaminated soils

International Nuclear Information System (INIS)

Bontidean, Ibolya; Mortari, Alessia; Leth, Suzanne; Brown, Nigel L.; Karlson, Ulrich; Larsen, Martin M.; Vangronsveld, Jaco; Corbisier, Philippe; Csoeregi, Elisabeth

2004-01-01

Biosensors based on whole bacterial cells and on bacterial heavy metal binding protein were used to determine the mercury concentration in soil. The soil samples were collected in a vegetable garden accidentally contaminated with elemental mercury 25 years earlier. Bioavailable mercury was measured using different sensors: a protein-based biosensor, a whole bacterial cell based biosensor, and a plant sensor, i.e. morphological and biochemical responses in primary leaves and roots of bean seedlings grown in the mercury-contaminated soil. For comparison the total mercury concentration of the soil samples was determined by AAS. Whole bacterial cell and protein-based biosensors gave accurate responses proportional to the total amount of mercury in the soil samples. On the contrary, plant sensors were found to be less useful indicators of soil mercury contamination, as determined by plant biomass, mercury content of primary leaves and enzyme activities

Assessing the toxicity of herbicide isoproturon on Aporrectodea caliginosa (Oligochaeta) and its fate in soil ecosystem.

Science.gov (United States)

Mosleh, Yahia Youssef Ismail

2009-08-01

This study was conducted to determine the residues of isoproturon and its metabolites, 1-(4-isopropylphenyl)-3-methylurea, 1-(4-isopropylphenyl) urea, and 4-isopropylanilin in soil and mature earthworms under laboratory conditions. Mature earthworms (Aporrectodea caliginosa) were exposed for various durations (7, 15, 30, and 60 days) to soils contaminated with isoproturon concentrations (2, 4, 6, 8, and 10 mg kg(-1) soil). The decrease in isoproturon concentration in the soil was inversely correlated to it's initial concentration. The highest concentration detected for isoproturon in earthworms was observed during the first 15 days and decreased thereafter. Acute toxicity of isoproturon was investigated; total soluble protein content and glycogen of the worms were evaluated. Levels of these parameters were related to isoproturon concentration in soil and earthworms. No lethal effect of isoproturon was observed even at the concentration of 1200 mg kg(-1) soil after 60 days of exposure. A reduction of total soluble protein was observed in all treated worms (maximum 59.54%). This study suggests the use of the total soluble protein content and glycogen of earthworms as biomarkers of exposure to isoproturon. 2008 Wiley Periodicals, Inc.

Relations between variously available fractions of trace metals in the soil and their actual plant-uptake

International Nuclear Information System (INIS)

Bujtas, K.; Csillag, J.

1999-01-01

In a pot experiment, availabilities of Cd, Cr, Ni, Pb, and Zn added to the soil as metal nitrates or as enrichment of sewage sludge were evaluated by comparing concentrations of their total potentially available, presumably plant-available and directly plant-available forms in the soil. At excessively increasing soil contamination, the plant-available concentrations increased more than the total soil contents, thus the relative availabilities of the metals increased. This was reflected in the amounts taken up by the young maize test plants and in the plant/soil transfer factors. Transfer factors calculated for the 'plant-available' soil metal contents depended less on the contamination level than those based on total soil metal contents. Refs. 8 (author)

Planning Considerations Related to Collecting and Analyzing Samples of the Martian Soils

Science.gov (United States)

Liu, Yang; Mellon, Mike T.; Ming, Douglas W.; Morris, Richard V.; Noble, Sarah K.; Sullivan, Robert J.; Taylor, Lawrence A.; Beaty, David W.

2014-01-01

The Mars Sample Return (MSR) End-to-End International Science Analysis Group (E2E-iSAG [1]) established scientific objectives associ-ated with Mars returned-sample science that require the return and investigation of one or more soil samples. Soil is defined here as loose, unconsolidated materials with no implication for the presence or absence of or-ganic components. The proposed Mars 2020 (M-2020) rover is likely to collect and cache soil in addition to rock samples [2], which could be followed by future sample retrieval and return missions. Here we discuss key scientific consid-erations for sampling and caching soil samples on the proposed M-2020 rover, as well as the state in which samples would need to be preserved when received by analysts on Earth. We are seeking feedback on these draft plans as input to mission requirement formulation. A related planning exercise on rocks is reported in an accompanying abstract [3].

Prediction of the Ebola Virus Infection Related Human Genes Using Protein-Protein Interaction Network.

Science.gov (United States)

Cao, HuanHuan; Zhang, YuHang; Zhao, Jia; Zhu, Liucun; Wang, Yi; Li, JiaRui; Feng, Yuan-Ming; Zhang, Ning

2017-01-01

Ebola hemorrhagic fever (EHF) is caused by Ebola virus (EBOV). It is reported that human could be infected by EBOV with a high fatality rate. However, association factors between EBOV and host still tend to be ambiguous. According to the "guilt by association" (GBA) principle, proteins interacting with each other are very likely to function similarly or the same. Based on this assumption, we tried to obtain EBOV infection-related human genes in a protein-protein interaction network using Dijkstra algorithm. We hope it could contribute to the discovery of novel effective treatments. Finally, 15 genes were selected as potential EBOV infection-related human genes. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Relative age and age sequence of fractions of soil organic matter

International Nuclear Information System (INIS)

Scharpenseel, H.W.

1975-01-01

Natural radiocarbon measurements on soil fractions provide information regarding the chances of separating the ''old biologically inert carbon'' out of samples of recent soil material. Beyond this, the relative fraction ages are scrutinized for the sequential order of the origin of the fractions within the biosynthetic reaction chain of soil humic matter. Among all fractions compared (classic humic matter fractionation by alkali and acid treatment; successive extraction with organic solvents of increasing polarity; separation according to particle size by Sephadex gel filtration; hydrolysis residue) the 6 n HCl hydrolysis residue shows the most consistent significant age increment. Repeated exhaustive hydrolysis treatment of the same sample material is still pending. All other fraction types indicate an age pattern under strong predetermination by method of origin, e.g., existence or lack of hydromorphy, without an evident enrichment of the ''old biologically inert carbon''. Among the organic extracts, no persistent age hierarchy is noticeable, whereas the classical fractions follow an age sequence mainly parallel to an increase of the molecular weight. Hymatomelanic acids appear rejuvenated by relics of recent carbon derived from the extractant ethanol. Grey humic acids are older than the brown humic acids, humines from fully terrestrial soil environment are older than humic acids, while in hydromorphic soils, cold alkali insoluble young C-compounds seem to be conserved which are liable to falsify rejuvenation of the humines

Computer Aided Design for Soil Classification Relational Database ...

African Journals Online (AJOL)

The paper focuses on the problems associated with classification, storage and retrieval of information on soil data, such as the incompatibility of soil data semantics; inadequate documentation, and lack of indexing; hence it is pretty difficult to efficiently access large database. Consequently, information on soil is very difficult ...

Total belowground carbon flux in subalpine forests is related to leaf area index, soil nitrogen, and tree height

Science.gov (United States)

Berryman, Erin Michele; Ryan, Michael G.; Bradford, John B.; Hawbaker, Todd J.; Birdsey, R.

2016-01-01

In forests, total belowground carbon (C) flux (TBCF) is a large component of the C budget and represents a critical pathway for delivery of plant C to soil. Reducing uncertainty around regional estimates of forest C cycling may be aided by incorporating knowledge of controls over soil respiration and TBCF. Photosynthesis, and presumably TBCF, declines with advancing tree size and age, and photosynthesis increases yet C partitioning to TBCF decreases in response to high soil fertility. We hypothesized that these causal relationships would result in predictable patterns of TBCF, and partitioning of C to TBCF, with natural variability in leaf area index (LAI), soil nitrogen (N), and tree height in subalpine forests in the Rocky Mountains, USA. Using three consecutive years of soil respiration data collected from 22 0.38-ha locations across three 1-km2 subalpine forested landscapes, we tested three hypotheses: (1) annual soil respiration and TBCF will show a hump-shaped relationship with LAI; (2) variability in TBCF unexplained by LAI will be related to soil nitrogen (N); and (3) partitioning of C to TBCF (relative to woody growth) will decline with increasing soil N and tree height. We found partial support for Hypothesis 1 and full support for Hypotheses 2 and 3. TBCF, but not soil respiration, was explained by LAI and soil N patterns (r2 = 0.49), and the ratio of annual TBCF to TBCF plus aboveground net primary productivity (ANPP) was related to soil N and tree height (r2 = 0.72). Thus, forest C partitioning to TBCF can vary even within the same forest type and region, and approaches that assume a constant fraction of TBCF relative to ANPP may be missing some of this variability. These relationships can aid with estimates of forest soil respiration and TBCF across landscapes, using spatially explicit forest data such as national inventories or remotely sensed data products.

Protein concentrate production from the biomass contaminated with radionuclides

International Nuclear Information System (INIS)

Nizhko, V.F.; Shinkarenko, M.P.; Polozhaj, V.V.; Krivchik, O.V.

1992-01-01

Coefficients of radionuclides accumulation are determined for traditional and rare forage crops grown on contaminated soils. It is shown that with low concentration of radionuclides in soil minimal level of contamination were found in the biomass of lupine (Lupinus luteus L.) and sainfoin (Onobrychis hybridus L.). Relatively high levels of contamination were found in comfrey (Symphytum asperum Lepech.) and bistort (Polygonum divaricatum L.). Comparatively low accumulation coefficients in case of higher density of soil contamination were observed for white and yellow sweetclovers (Melilotus albus Medik. and M. officinalis (L.) Desr.), while higher values of coefficients were found for bird's-foot trefoil (Lotus corniculatus L.), white clover (Trifolium repens L.) and alsike clover (t. hybridum L.). Biomass of white sweet-clover and alsike clover has been processed to produce leaf protein concentrate. It is shown that with biomass contamination of 1 kBq/kg and above conventional technology based on thermal precipitation of the protein does not provide production of pure product. More purified protein concentrates are obtained after two-stage processing of the biomass

Geophagia, a soil - environmental related disease

OpenAIRE

Ghorbani, Hadi

2009-01-01

Geophagia or geophagy is a habit for an uncontrollable urge to eat earth that commonly is occur in poverty-stricken populations and particularly there are in children under three years of age and pregnant women. The custom of involuntary or deliberate eating of soil, especially clayey soil, has a long history and is amazingly widespread. Some researchers have described an anomalous clay layer at a prehistoric site at the Kalambo Falls in Zambia indicating that clay might have been...

The impact of land use on biological activity of agriculture soils. An State-of-the-Art

Science.gov (United States)

Morugán-Coronado, Alicia; Cerdà, Artemi; García-Orenes, Fuensanta

2014-05-01

112 (1), 18-26 Morugán-Coronado, A., García-Orenes, F., Mataix-Solera, J., Arcenegui, V., Mataix-Beneyto, J. 2013. Application of soil quality indices to assess the status of agricultural soils irrigated with treated wastewaters. Solid Earth 4 (1), 119-127 2013 Pampulha ME, Oliveira A (2006) Impact of an herbicide combination of bromoxynil and prosulfuron on soil microorganisms. Current Microbiology 53: 238-243. Paz-Ferreiro, J., Fu., S. 2013. Biological indices for soil quality evaluation: perspectives and limitations. Land degradation & development. DOI: 10.1002/ldr.2262 Vasconcellos, R. L. F., Bonfim, J. A., Baretta, D., Cardoso, E.J.B.N. 2013. Arbuscular mycorrhizal fungi and glomalin-related soil protein as potential indicators of soil quality in a recuperation gradient of the Atlantic forest in brazil. Land degradation & development. DOI: 10.1002/ldr.2228

Soil and worm: on eating as relating

NARCIS (Netherlands)

Bertoni, F.

2013-01-01

Earthworms and soil combine in an ecotoxicological experiment in the Vrije Universiteit in Amsterdam. To determine the effects of a toxic compound produced by genetically modified broccoli, ecotoxicologists use the earthworm in a standardized test to understand the conditions of the soil. In the

Protein Carbamylation: A Marker Reflecting Increased Age-Related Cell Oxidation

Directory of Open Access Journals (Sweden)

Julia Carracedo

2018-05-01

Full Text Available Carbamylation is a post-translational modification of proteins that may partake in the oxidative stress-associated cell damage, and its increment has been recently proposed as a “hallmark of aging”. The molecular mechanisms associated with aging are related to an increased release of free radicals. We have studied whether carbamylated proteins from the peripheral blood of healthy subjects are related to oxidative damage and aging, taking into account the gender and the immune profile of the subjects. The study was performed in healthy human volunteers. The detection of protein carbamylation and malondialdehyde (MDA levels was evaluated using commercial kits. The immune profile was calculated using parameters of immune cell function. The results show that the individuals from the elderly group (60–79 years old have increased carbamylated protein and MDA levels. When considered by gender, only men between 60 and 79 years old showed significantly increased carbamylated proteins and MDA levels. When those subjects were classified by their immune profile, the carbamylated protein levels were higher in those with an older immune profile. In conclusion, the carbamylation of proteins in peripheral blood is related to age-associated oxidative damage and to an aging functional immunological signature. Our results suggest that carbamylated proteins may play an important role at the cellular level in the aging process.

Proteomic Analysis of Sauvignon Blanc Grape Skin, Pulp and Seed and Relative Quantification of Pathogenesis-Related Proteins.

Directory of Open Access Journals (Sweden)

Bin Tian

Full Text Available Thaumatin-like proteins (TLPs and chitinases are the main constituents of so-called protein hazes which can form in finished white wine and which is a great concern of winemakers. These soluble pathogenesis-related (PR proteins are extracted from grape berries. However, their distribution in different grape tissues is not well documented. In this study, proteins were first separately extracted from the skin, pulp and seed of Sauvignon Blanc grapes, followed by trypsin digestion and analysis by liquid chromatography-electrospray ionization-tandem mass spectrometry (LC-ESI-MS/MS. Proteins identified included 75 proteins from Sauvignon Blanc grape skin, 63 from grape pulp and 35 from grape seed, mostly functionally classified as associated with metabolism and energy. Some were present exclusively in specific grape tissues; for example, proteins involved in photosynthesis were only detected in grape skin and proteins found in alcoholic fermentation were only detected in grape pulp. Moreover, proteins identified in grape seed were less diverse than those identified in grape skin and pulp. TLPs and chitinases were identified in both Sauvignon Blanc grape skin and pulp, but not in the seed. To relatively quantify the PR proteins, the protein extracts of grape tissues were seperated by HPLC first and then analysed by SDS-PAGE. The results showed that the protein fractions eluted at 9.3 min and 19.2 min under the chromatographic conditions of this study confirmed that these corresponded to TLPs and chitinases seperately. Thus, the relative quantification of TLPs and chitinases in protein extracts was carried out by comparing the area of corresponding peaks against the area of a thamautin standard. The results presented in this study clearly demonstrated the distribution of haze-forming PR proteins in grape berries, and the relative quantification of TLPs and chitinases could be applied in fast tracking of changes in PR proteins during grape growth and

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny.

Science.gov (United States)

Bell, Terrence H; El-Din Hassan, Saad; Lauron-Moreau, Aurélien; Al-Otaibi, Fahad; Hijri, Mohamed; Yergeau, Etienne; St-Arnaud, Marc

2014-02-01

Phytoremediation is an attractive alternative to excavating and chemically treating contaminated soils. Certain plants can directly bioremediate by sequestering and/or transforming pollutants, but plants may also enhance bioremediation by promoting contaminant-degrading microorganisms in soils. In this study, we used high-throughput sequencing of bacterial 16S rRNA genes and the fungal internal transcribed spacer (ITS) region to compare the community composition of 66 soil samples from the rhizosphere of planted willows (Salix spp.) and six unplanted control samples at the site of a former petrochemical plant. The Bray-Curtis distance between bacterial communities across willow cultivars was significantly correlated with the distance between fungal communities in uncontaminated and moderately contaminated soils but not in highly contaminated (HC) soils (>2000 mg kg(-1) hydrocarbons). The mean dissimilarity between fungal, but not bacterial, communities from the rhizosphere of different cultivars increased substantially in the HC blocks. This divergence was partly related to high fungal sensitivity to hydrocarbon contaminants, as demonstrated by reduced Shannon diversity, but also to a stronger influence of willows on fungal communities. Abundance of the fungal class Pezizomycetes in HC soils was directly related to willow phylogeny, with Pezizomycetes dominating the rhizosphere of a monophyletic cluster of cultivars, while remaining in low relative abundance in other soils. This has implications for plant selection in phytoremediation, as fungal associations may affect the health of introduced plants and the success of co-inoculated microbial strains. An integrated understanding of the relationships between fungi, bacteria and plants will enable the design of treatments that specifically promote effective bioremediating communities.

Quantitative Evaluation of Serum Proteins Uncovers a Protein Signature Related to Maturity-Onset Diabetes of the Young (MODY).

Science.gov (United States)

Tuerxunyiming, Muhadasi; Xian, Feng; Zi, Jin; Yimamu, Yilihamujiang; Abuduwayite, Reshalaiti; Ren, Yan; Li, Qidan; Abudula, Abulizi; Liu, SiQi; Mohemaiti, Patamu

2018-01-05

Maturity-onset diabetes of the young (MODY) is an inherited monogenic type of diabetes. Genetic mutations in MODY often cause nonsynonymous changes that directly lead to the functional distortion of proteins and the pathological consequences. Herein, we proposed that the inherited mutations found in a MODY family could cause a disturbance of protein abundance, specifically in serum. The serum samples were collected from a Uyghur MODY family through three generations, and the serum proteins after depletion treatment were examined by quantitative proteomics to characterize the MODY-related serum proteins followed by verification using target quantification of proteomics. A total of 32 serum proteins were preliminarily identified as the MODY-related. Further verification test toward the individual samples demonstrated the 12 candidates with the significantly different abundance in the MODY patients. A comparison of the 12 proteins among the sera of type 1 diabetes, type 2 diabetes, MODY, and healthy subjects was conducted and revealed a protein signature related with MODY composed of the serum proteins such as SERPINA7, APOC4, LPA, C6, and F5.

Relations of microbiome characteristics to edaphic properties of tropical soils from Trinidad

Directory of Open Access Journals (Sweden)

Vidya eDe Gannes

2015-09-01

Full Text Available Understanding how community structure of Bacteria, Archaea and Fungi varies as a function of edaphic characteristics is key to elucidating associations between soil ecosystem function and the microbiome that sustains it. In this study, non-managed tropical soils were examined that represented a range of edaphic characteristics, and a comprehensive soil microbiome analysis was done by Illumina sequencing of amplicon libraries that targeted Bacteria (universal prokaryotic 16S rRNA gene primers, Archaea (primers selective for archaeal 16S rRNA genes or Fungi (internal transcribed spacer region. Microbiome diversity decreased in the order: Bacteria > Archaea > Fungi. Bacterial community composition had a strong relationship to edaphic factors while that of Archaea and Fungi was comparatively weak. All communities were significantly more similar within soils, than they were between soils (ANOSIM p < 0.001; bacterial communities were 70-80% alike, while communities of Fungi and Archaea had 40-50% similarity. Communities differed in species turnover patterns, such that two soils with relatively similar bacterial communities could not be predicted to be similar in composition of Archaea or Fungi. Bacterial and archaeal diversity had significant (negative correlations to pH, whereas fungal diversity was not correlated to pH. Edaphic characteristics that best explained variation between soils in bacterial community structure were: total carbon, sodium, magnesium and zinc. For fungi, the best variables were: sodium, magnesium, phosphorus, boron and C/N. Archaeal communities had two sets of edaphic factors of equal strength, one contained sulphur, sodium, and ammonium-N and the other was composed of clay, potassium, ammonium-N, and nitrate-N. Collectively, the data indicate that Bacteria, Archaea and Fungi did not closely parallel one another in community structure development, and thus microbiomes in each soil acquired unique identities. This divergence

Measurement of trifluralin volatilization in the field: Relation to soil residue and effect of soil incorporation

International Nuclear Information System (INIS)

Bedos, C.; Rousseau-Djabri, M.F.; Gabrielle, B.; Flura, D.; Durand, B.; Barriuso, E.; Cellier, P.

2006-01-01

Volatilization may represent a major dissipation pathway for pesticides applied to soils or crops. A field experiment (September, 2002), consisted in volatilization fluxes measurements during 6 days, covering the periods before and after soil incorporation carried out 24 h after trifluralin spraying on bare soil. Evolution of concentration in soil was measured during 101 days, together with soil physical and meteorological variables. Volatilization fluxes were very high immediately after application (1900 ng m -2 s -1 ), decreased down to 100 ng m -2 s -1 in the following 24 h. Soil incorporation strongly abated trifluralin concentration in the air. 99% of the total volatilization losses recorded over the 6 days following application occurred before incorporation. Volatilization fluxes evidenced a diurnal cycle driven by environmental conditions. Soil trifluralin residues could still be quantified 101 days after application. Our results highlight the caution required when using soil degradation half-life values in the field for volatile compounds. - Losses by volatilization contribute significantly to soil dissipation of the herbicide trifluralin before its soil incorporation

Sediment spatial distribution evaluated by three methods and its relation to some soil properties

Energy Technology Data Exchange (ETDEWEB)

Bacchi, O O.S. . [Centro de Energia Nuclear na Agricultura-CENA/USP, Laboratorio de Fisica do Solo, Piracicaba, SP (Brazil); Reichardt, K [Centro de Energia Nuclear na Agricultura-CENA/USP, Laboratorio de Fisica do Solo, Piracicaba, SP (Brazil); Departamento de Ciencias Exatas, Escola Superior de Agricultura ' Luiz de Queiroz' ESALQ/USP, Piracicaba, SP (Brazil); Sparovek, G [Departamento de Solos e Nutricao de Plantas, Escola Superior de Agricultura ' Luiz de Queiroz' ESALQ/USP, Piracicaba, SP (Brazil)

2003-02-15

An investigation of rates and spatial distribution of sediments on an agricultural field cultivated with sugarcane was undertaken using the {sup 137}Cs technique, USLE and WEPP models. The study was carried out on the Ceveiro watershed of the Piracicaba river basin, state of Sao Paulo, Brazil, experiencing severe soil degradation due to soil erosion. The objectives of the study were to compare the spatial distribution of sediments evaluated by the three methods and its relation to some soil properties. Erosion and sedimentation rates and their spatial distribution estimated by the three methods were completely different. Although not able to show sediment deposition, the spatial distribution of erosion rates evaluated by USLE presented the best correlation with other studied soil properties. (author)

Soils

Science.gov (United States)

Emily Moghaddas; Ken Hubbert

2014-01-01

When managing for resilient forests, each soil’s inherent capacity to resist and recover from changes in soil function should be evaluated relative to the anticipated extent and duration of soil disturbance. Application of several key principles will help ensure healthy, resilient soils: (1) minimize physical disturbance using guidelines tailored to specific soil types...

Soil sheaths, photosynthate distribution to roots, and rhizosphere water relations for Opuntia ficus-indica

Energy Technology Data Exchange (ETDEWEB)

Huang, B.; North, G.B.; Nobel, P.S. (Univ. of California, Los Angeles, CA (United States))

1993-09-01

Soil sheaths incorporating aggregated soil particles surround young roots of many species, but the effects of such sheaths on water movement between roots and the soil are largely unknown. The quantity and location of root exudates associated with soil sheath along the entire length of its young roots, except within 1.4 cm of the tip. The soil sheaths, which average 0.7 mm in thickness, were composed of soil particles and root hairs, both of which were covered with exuded mucilaginous material. As determined with a [sup 14]C pulse-labeling technique, 2% of newly fixed [sup 14]C-photosynthate was translocated into the roots at 3d, 6% at 9 d, and 8% at 15 d after labeling. The fraction of insoluble [sup 14]C in the roots increased twofold from 3 d to 15 d. Over the same time period, 6%-9% of the [sup 14]C translocated to the roots was exuded into the soil. The soluble [sup 14]C compounds exuded into the soil were greater in the 3-cm segment at the root tip than elsewhere along the root, whereas mucilage was exuded relatively uniformly along roots 15 cm in length. The volumetric efflux of water increase for both sheathed and unsheathed roots as the soil water potential decreased form -0.1 MPa to -1.0 MPa. The efflux rate was greater for unsheathed roots than for sheathed roots, which were more turgid and had a higher water potential, especially at lower soil water potentials. During drying, soil particles in the sheaths aggregate more tightly, making the sheaths less permeable to water and possibly creating air gaps. The soil sheaths of O. ficus-indica thus reduce water loss from the roots to a drying soil. 34 refs., 6 figs., 1 tab.

A transthyretin-related protein is functionally expressed in Herbaspirillum seropedicae.

Science.gov (United States)

Matiollo, Camila; Vernal, Javier; Ecco, Gabriela; Bertoldo, Jean Borges; Razzera, Guilherme; de Souza, Emanuel M; Pedrosa, Fábio O; Terenzi, Hernán

2009-10-02

Transthyretin-related proteins (TRPs) constitute a family of proteins structurally related to transthyretin (TTR) and are found in a large range of bacterial, fungal, plant, invertebrate, and vertebrate species. However, it was recently recognized that both prokaryotic and eukaryotic members of this family are not functionally related to transthyretins. TRPs are in fact involved in the purine catabolic pathway and function as hydroxyisourate hydrolases. An open reading frame encoding a protein similar to the Escherichia coli TRP was identified in Herbaspirillum seropedicae genome (Hs_TRP). It was cloned, overexpressed in E. coli, and purified to homogeneity. Mass spectrometry data confirmed the identity of this protein, and circular dichroism spectrum indicated a predominance of beta-sheet structure, as expected for a TRP. We have demonstrated that Hs_TRP is a 5-hydroxyisourate hydrolase and by site-directed mutagenesis the importance of three conserved catalytic residues for Hs_TRP activity was further confirmed. The production of large quantities of this recombinant protein opens up the possibility of obtaining its 3D-structure and will help further investigations into purine catabolism.

Arsenic bioavailability in soils before and after soil washing: the use of Escherichia coli whole-cell bioreporters.

Science.gov (United States)

Yoon, Youngdae; Kang, Yerin; Chae, Yooeun; Kim, Sunghoon; Lee, Youngshim; Jeong, Seung-Woo; An, Youn-Joo

2016-02-01

We investigated the quantification of bioavailable arsenic in contaminated soils and evaluation of soil-washing processes in the aspect of bioavailability using a novel bacterial bioreporter developed in present study. The whole-cell bioreporter (WCB) was genetically engineered by fusing the promoter of nik operon from Escherichia coli and green fluorescent protein as a sensing domain and reporter domain. Among eight well-known hazardous heavy metals and metalloid, this system responded specifically to arsenic, thereby inferring association of As(III) with NikR inhibits the repression. Moreover, the response was proportional to the concentration of As(III), thereby it was capable to determine the amount of bioavailable arsenic quantitatively in contaminated soils. The bioavailable portion of arsenic was 5.9 (3.46-10.96) and 0.9 (0.27-1.74) % of total from amended and site soils, respectively, suggesting the bioavailability of arsenic in soils was related to the soil properties and duration of aging. On the other hand, only 1.37 (0.21-2.97) % of total arsenic was extracted into soil solutions and 19.88 (11.86-28.27) % of arsenic in soil solution was bioavailable. This result showed that the soluble arsenic is not all bioavailable and most of bioavailable arsenic in soils is water non-extractable. In addition, the bioavailable arsenic was increased after soil-washing while total amount was decreased, thereby suggesting the soil-washing processes release arsenic associated with soil materials to be bioavailable. Therefore, it would be valuable to have a tool to assess bioavailability and the bioavailability should be taken into consideration for soil remediation plans.

The relative-intensity method of X-ray fluorescence analysis and its application to soils and rocks

International Nuclear Information System (INIS)

Childs, C.W.; Furkert, R.J.

1974-01-01

The relative-intensity X-ray fluorescence method of analysis of rock and soil samples has been investigated and compared with the net-intensity method. Strong, coherently scattered radiation originating from the X-ray tube is shown to be preferable to background radiation as an internal standard, and scattered radiation measured at one wavelength can usefully be applied in the determination of several elements. When the concentrations of an element in two soil samples of different composition (for example concretions and the soil adjacent to them) are compared, the ratio of the relative intensities may be different from the ratio of net intensities by a factor of about two. The concentrations of manganese in thirteen standard rock samples determined by the relative-intensity method are within or very close to the ranges of values reported previously

Post-Fire Soil Respiration in Relation to the Burnt Wood Management

Science.gov (United States)

Marañón Jiménez, Sara; Castro, J.; Kowalski, A.; Serrano-Ortiz, P.; Ruiz, B.; Sancez-Canete, Ep; Zamora, R.

2010-05-01

important for the management of forest areas affected by wildfires, now that they offer key information about the influence of the forest intervention related to the burnt wood after fires in the carbon cycle and about the soil capacity of CO2 sequestration.

Stiffness and Damping related to steady state soil-structure Interaction of monopiles

DEFF Research Database (Denmark)

Bayat, Mehdi

The present thesis concerns soil–structure interaction affecting the dynamic structural response of offshore wind turbines with focus on soil stiffness and seepage damping due to pore water flow generated by cyclic motion of a monopile. The thesis aims to improve modelling of the dynamic...... and dashpots. An appropriate model based on considering the effect of dynamic behaviour of soil–structure interaction has been explored. In this regard, the coupled equations for porous media have been employed in order to account for soil deformation as well as pore pressure. The effects of drained versus...... undrained behaviour of the soil and the impact of this behaviour on the stiffness and damping related to soil–structure interaction at different load frequencies have been illustrated. Based on the poroelastic and Kelvin models, more realistic dynamic properties have been presented by considering the effect...

Actual and potential salt-related soil degradation in an irrigated rice scheme in the Sahelian zone of Mauritania

NARCIS (Netherlands)

Asten, van P.J.A.; Barbi'ro, L.; Wopereis, M.C.S.; Maeght, J.L.; Zee, van der S.E.A.T.M.

2003-01-01

Salt-related soil degradation due to irrigation activities is considered a major threat to the sustainability of rice cropping under semi-arid conditions in West Africa. Rice productivity problems related to soil salinity, alkalinity and topographic position were observed in an irrigated rice scheme

Peat decomposability in managed organic soils in relation to land use, organic matter composition and temperature

Directory of Open Access Journals (Sweden)

C. Bader

2018-02-01

Full Text Available Organic soils comprise a large yet fragile carbon (C store in the global C cycle. Drainage, necessary for agriculture and forestry, triggers rapid decomposition of soil organic matter (SOM, typically increasing in the order forest < grassland < cropland. However, there is also large variation in decomposition due to differences in hydrological conditions, climate and specific management. Here we studied the role of SOM composition on peat decomposability in a variety of differently managed drained organic soils. We collected a total of 560 samples from 21 organic cropland, grassland and forest soils in Switzerland, monitored their CO2 emission rates in lab incubation experiments over 6 months at two temperatures (10 and 20 °C and related them to various soil characteristics, including bulk density, pH, soil organic carbon (SOC content and elemental ratios (C / N, H / C and O / C. CO2 release ranged from 6 to 195 mg CO2-C g−1 SOC at 10 °C and from 12 to 423 mg g−1 at 20 °C. This variation occurring under controlled conditions suggests that besides soil water regime, weather and management, SOM composition may be an underestimated factor that determines CO2 fluxes measured in field experiments. However, correlations between the investigated chemical SOM characteristics and CO2 emissions were weak. The latter also did not show a dependence on land-use type, although peat under forest was decomposed the least. High CO2 emissions in some topsoils were probably related to the accrual of labile crop residues. A comparison with published CO2 rates from incubated mineral soils indicated no difference in SOM decomposability between these soil classes, suggesting that accumulation of recent, labile plant materials that presumably account for most of the evolved CO2 is not systematically different between mineral and organic soils. In our data set, temperature sensitivity of decomposition (Q10 on average 2.57�

Isotopic tracer studies to evaluate relative efficiency of different forms of P for growing rice on different soil types

Energy Technology Data Exchange (ETDEWEB)

Dash, R N; Mohanty, S K; Patnaik, S [Central Rice Research Inst., Cuttack (India)

1977-12-01

The relative efficiency of different forms of P in relation to their time of application for growing rice on different soil types has been studied by using /sup 32/P tagged mono-, di-, and tri-calcium phosphate, ammonium nitrate phosphate containing all the P in the citrate-soluble form and potassium meta-phosphate. P-deficient acid laterite soil from Burdwan, red loam soil from Peramanpur and calcareous black soil from Hyderabad were used in the study. The different P forms were found to be compatible in the acid, red and laterite soils when the phosphorus forms were primed to moist acid soils 2 weeks prior to flooding. On application at flooding, fertilizers containing citrate-soluble phosphate were found to be less effective as compared to those containing water-soluble phosphate. In the calcareous black soil, however, the fertilizers, containing insoluble or citrate-soluble phosphates were not as efficient as the water-soluble forms, possibly because of lack of dissolution process. Potassium meta-phosphate was found to be effective in all the soil types whether applied at flooding or primed to the moist soil.

The toxicity of different lead salts to Enchytraeus crypticus in relation to bioavailability in soil

NARCIS (Netherlands)

Zhang, Lulu; Van Gestel, Cornelis A.M.

2017-01-01

The present study aimed to assess the bioavailability and toxicity of lead nitrate and lead chloride to Enchytraeus crypticus in a natural standard soil. Worms were exposed to Pb-spiked soil for 21 d, and survival and reproduction were related to total, 0.01 M CaCl2-extractable, and porewater Pb

Physical soil quality indicators for monitoring British soils

Science.gov (United States)

Corstanje, Ron; Mercer, Theresa G.; Rickson, Jane R.; Deeks, Lynda K.; Newell-Price, Paul; Holman, Ian; Kechavarsi, Cedric; Waine, Toby W.

2017-09-01

Soil condition or quality determines its ability to deliver a range of functions that support ecosystem services, human health and wellbeing. The increasing policy imperative to implement successful soil monitoring programmes has resulted in the demand for reliable soil quality indicators (SQIs) for physical, biological and chemical soil properties. The selection of these indicators needs to ensure that they are sensitive and responsive to pressure and change, e.g. they change across space and time in relation to natural perturbations and land management practices. Using a logical sieve approach based on key policy-related soil functions, this research assessed whether physical soil properties can be used to indicate the quality of British soils in terms of their capacity to deliver ecosystem goods and services. The resultant prioritised list of physical SQIs was tested for robustness, spatial and temporal variability, and expected rate of change using statistical analysis and modelling. Seven SQIs were prioritised: soil packing density, soil water retention characteristics, aggregate stability, rate of soil erosion, depth of soil, soil structure (assessed by visual soil evaluation) and soil sealing. These all have direct relevance to current and likely future soil and environmental policy and are appropriate for implementation in soil monitoring programmes.

Physical soil quality indicators for monitoring British soils

Directory of Open Access Journals (Sweden)

R. Corstanje

2017-09-01

Full Text Available Soil condition or quality determines its ability to deliver a range of functions that support ecosystem services, human health and wellbeing. The increasing policy imperative to implement successful soil monitoring programmes has resulted in the demand for reliable soil quality indicators (SQIs for physical, biological and chemical soil properties. The selection of these indicators needs to ensure that they are sensitive and responsive to pressure and change, e.g. they change across space and time in relation to natural perturbations and land management practices. Using a logical sieve approach based on key policy-related soil functions, this research assessed whether physical soil properties can be used to indicate the quality of British soils in terms of their capacity to deliver ecosystem goods and services. The resultant prioritised list of physical SQIs was tested for robustness, spatial and temporal variability, and expected rate of change using statistical analysis and modelling. Seven SQIs were prioritised: soil packing density, soil water retention characteristics, aggregate stability, rate of soil erosion, depth of soil, soil structure (assessed by visual soil evaluation and soil sealing. These all have direct relevance to current and likely future soil and environmental policy and are appropriate for implementation in soil monitoring programmes.

Soil losses from typic cambisols and red latosol as related to three erosive rainfall patterns

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Regimeire Freitas Aquino

2013-02-01

Full Text Available Rainfall erosivity is one of the main factors related to water erosion in the tropics. This work focused on relating soil loss from a typic dystrophic Tb Haplic Cambisol (CXbd and a typic dystrophic Red Latosol (LVdf to different patterns of natural erosive rainfall. The experimental plots of approximately 26 m² (3 x 8.67 m consisted of a CXbd area with a 0.15 m m-1 slope and a LVdf area with 0.12 m m-1 slope, both delimited by galvanized plates. Drainpipes were installed at the lower part of these plots to collect runoff, interconnected with a Geib or multislot divisor. To calculate erosivity (EI30, rainfall data, recorded continuously at a weather station in Lavras, were used. The data of erosive rainfall events were measured (10 mm precipitation intervals, accuracy 0.2 mm, 24 h period, 20 min intervals, characterized as rainfall events with more than 10 mm precipitation, maximum intensity > 24 mm h-1 within 15 min, or kinetic energy > 3.6 MJ, which were used in this study to calculate the rainfall erosivity parameter, were classified according to the moment of peak precipitation intensity in advanced, intermediate and delayed patterns. Among the 139 erosive rainfall events with CXbd soil loss, 60 % were attributed to the advanced pattern, with a loss of 415.9 Mg ha-1, and total losses of 776.0 Mg ha-1. As for the LVdf, of the 93 erosive rainfall events with soil loss, 58 % were listed in the advanced pattern, with 37.8 Mg ha-1 soil loss and 50.9 Mg ha-1 of total soil loss. The greatest soil losses were observed in the advanced rain pattern, especially for the CXbd. From the Cambisol, the soil loss per rainfall event was greatest for the advanced pattern, being influenced by the low soil permeability.

Rapid change of AM fungal community in a rain-fed wheat field with short-term plastic film mulching practice.

Science.gov (United States)

Liu, Yongjun; Mao, Lin; He, Xinhua; Cheng, Gang; Ma, Xiaojun; An, Lizhe; Feng, Huyuan

2012-01-01

Plastic film mulching (PFM) is a widely used agricultural practice in the temperate semi-arid Loess Plateau of China. However, how beneficial soil microbes, arbuscular mycorrhizal (AM) fungi in particular, respond to the PFM practice is not known. Here, a field experiment was performed to study the effects of a 3-month short-term PFM practice on AM fungi in plots planted with spring wheat (Triticum aestivum L. cv. Dingxi-2) in the Loess Plateau. AM colonization, spore density, wheat spike weight, and grain phosphorus (P) content were significantly increased in the PFM treatments, and these changes were mainly attributable to changes in soil properties such as available P and soil moisture. Alkaline phosphatase activity was significantly higher in PFM soils, but levels of AM fungal-related glomalin were similar between treatments. A total of nine AM fungal phylotypes were detected in root samples based on AM fungal SSU rDNA analyses, with six and five phylotypes in PFM and no-PFM plots, respectively. Although AM fungal phylotype richness was not statistically different between treatments, the community compositions were different, with four and three specific phylotypes in the PFM and no-PFM plots, respectively. A significant and rapid change in AM fungal, wheat, and soil variables following PFM suggested that the functioning of the AM symbiosis had been changed in the wheat field under PFM. Future studies are needed to investigate whether PFM applied over a longer term has a similar effect on the AM fungal community and their functioning in an agricultural ecosystem.

The Relation between Soil Parameters and Growth Characteristics of Tamarix ramosissima in Abyaneh, Isfahan Province

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SayedHamid Matinkhah

2017-12-01

Full Text Available Vegetative characteristics of plant species are strongly dependent on habitat environmental conditions. Most Salt cedar (Tamarix ramosissima individuals grow on unsuitable soil and climate conditions. One of the important habitats of this species is near Abyaneh in Isfahan Province. To investigate the relation of edaphic factors on the growth of T. ramosissima, three plots 400m2 in area were randomly placed in this region. In each plot, crown cover and mean height of each tree were measured. Chemical and physical properties of soil were evaluated in two depths (0-20, 20-40cm. The relation between soil and vegetation was assessed using ordination method and RDA. The results suggest that in the upper depth, organic matter and saturation percentage (%SP have a strong positive correlation with vegetative factors of T. ramosissima including canopy cover and mean height. On the other hand, in lower depth pH, %CaSO4 factors have higher correlation with plants factors compared to upper depth. Therefore, organic matter in upper layer and saturation percentage (%SP have more correlation with vegetative factors. This suggests the importance of studying these two soil depths. In the restoration projects on this species, it is necessary to consider the abovementioned soil factors.

Soil-related Input Parameters for the Biosphere Model

International Nuclear Information System (INIS)

A. J. Smith

2003-01-01

This analysis is one of the technical reports containing documentation of the Environmental Radiation Model for Yucca Mountain Nevada (ERMYN), a biosphere model supporting the Total System Performance Assessment (TSPA) for the geologic repository at Yucca Mountain. The biosphere model is one of a series of process models supporting the Total System Performance Assessment (TSPA) for the Yucca Mountain repository. A graphical representation of the documentation hierarchy for the ERMYN biosphere model is presented in Figure 1-1. This figure shows the interrelationships among the products (i.e., analysis and model reports) developed for biosphere modeling, and the plan for development of the biosphere abstraction products for TSPA, as identified in the ''Technical Work Plan: for Biosphere Modeling and Expert Support'' (BSC 2003 [163602]). It should be noted that some documents identified in Figure 1-1 may be under development at the time this report is issued and therefore not available. This figure is included to provide an understanding of how this analysis report contributes to biosphere modeling in support of the license application, and is not intended to imply that access to the listed documents is required to understand the contents of this report. This report, ''Soil Related Input Parameters for the Biosphere Model'', is one of the five analysis reports that develop input parameters for use in the ERMYN model. This report is the source documentation for the six biosphere parameters identified in Table 1-1. ''The Biosphere Model Report'' (BSC 2003 [160699]) describes in detail the conceptual model as well as the mathematical model and its input parameters. The purpose of this analysis was to develop the biosphere model parameters needed to evaluate doses from pathways associated with the accumulation and depletion of radionuclides in the soil. These parameters support the calculation of radionuclide concentrations in soil from on-going irrigation and ash

Variations in yield and gluten proteins in durum wheat varieties under late-season foliar versus soil application of nitrogen fertilizer in a northern Mediterranean environment.

Science.gov (United States)

Visioli, Giovanna; Bonas, Urbana; Dal Cortivo, Cristian; Pasini, Gabriella; Marmiroli, Nelson; Mosca, Giuliano; Vamerali, Teofilo

2018-04-01

With the increasing demand for high-quality foodstuffs and concern for environmental sustainability, late-season nitrogen (N) foliar fertilization of common wheat is now an important and widespread practice. This study investigated the effects of late-season foliar versus soil N fertilization on yield and protein content of four varieties of durum wheat, Aureo, Ariosto, Biensur and Liberdur, in a three-year field trial in northern Italy. Variations in low-molecular-weight glutenins (LMW-GS), high-molecular-weight glutenins (HMW-GS) and gliadins were assessed by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). It was found that N applied to the canopy did not improve protein rate compared with N application to the soil (general mean 138 mg g -1 ), but moderately increased productivity in the high-yielding varieties Liberdur and Biensur (three-year means 7.23 vs 7.13 and 7.53 vs 7.09 t ha -1 respectively). Technological quality was mainly related to variety choice, Aureo and Ariosto having higher protein rates and glutenin/gliadin ratios. Also found was a strong 'variety × N application method' interaction in the proportions of protein subunits within each class, particularly LMW-GS and gliadins. A promising result was the higher N uptake efficiency, although as apparent balance, combined with higher HMW/LMW-GS ratio in var. Biensur. Late-season foliar N fertilization allows N fertilizer saving, potentially providing environmental benefits in the rainy climate of the northern Mediterranean area, and also leads to variety-dependent up-regulation of essential LMW-GS and gliadins. Variety choice is a key factor in obtaining high technological quality, although it is currently associated with modest grain yield. This study provides evidence of high quality in the specific high-yielding variety Biensur, suggesting its potential as a mono-varietal semolina for pasta production. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Relative nitrogen mineralization and nitrification potentials in relation to soil chemistry in oak forest soils along a historical deposition gradient

Science.gov (United States)

Ralph E. J. Boerner; Elaine Kennedy Sutherland

1996-01-01

This study quantified soil nutrient status and N mineralization/nitrification potentials in soils of oak-dominated, unmanaged forest stands in seven USDA Forest Service experimental forests (EF) ranging along a historical and current acidic deposition gradient from southern Illinois to central West Virginia.

Prediction of Protein-Protein Interactions Related to Protein Complexes Based on Protein Interaction Networks

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Peng Liu

2015-01-01

Full Text Available A method for predicting protein-protein interactions based on detected protein complexes is proposed to repair deficient interactions derived from high-throughput biological experiments. Protein complexes are pruned and decomposed into small parts based on the adaptive k-cores method to predict protein-protein interactions associated with the complexes. The proposed method is adaptive to protein complexes with different structure, number, and size of nodes in a protein-protein interaction network. Based on different complex sets detected by various algorithms, we can obtain different prediction sets of protein-protein interactions. The reliability of the predicted interaction sets is proved by using estimations with statistical tests and direct confirmation of the biological data. In comparison with the approaches which predict the interactions based on the cliques, the overlap of the predictions is small. Similarly, the overlaps among the predicted sets of interactions derived from various complex sets are also small. Thus, every predicted set of interactions may complement and improve the quality of the original network data. Meanwhile, the predictions from the proposed method replenish protein-protein interactions associated with protein complexes using only the network topology.

Prediction and characterization of human ageing-related proteins by using machine learning.

Science.gov (United States)

Kerepesi, Csaba; Daróczy, Bálint; Sturm, Ádám; Vellai, Tibor; Benczúr, András

2018-03-06

Ageing has a huge impact on human health and economy, but its molecular basis - regulation and mechanism - is still poorly understood. By today, more than three hundred genes (almost all of them function as protein-coding genes) have been related to human ageing. Although individual ageing-related genes or some small subsets of these genes have been intensively studied, their analysis as a whole has been highly limited. To fill this gap, for each human protein we extracted 21000 protein features from various databases, and using these data as an input to state-of-the-art machine learning methods, we classified human proteins as ageing-related or non-ageing-related. We found a simple classification model based on only 36 protein features, such as the "number of ageing-related interaction partners", "response to oxidative stress", "damaged DNA binding", "rhythmic process" and "extracellular region". Predicted values of the model quantify the relevance of a given protein in the regulation or mechanisms of the human ageing process. Furthermore, we identified new candidate proteins having strong computational evidence of their important role in ageing. Some of them, like Cytochrome b-245 light chain (CY24A) and Endoribonuclease ZC3H12A (ZC12A) have no previous ageing-associated annotations.

Environment and geographic distance differ in relative importance for determining fungal community of rhizosphere and bulk soil.

Science.gov (United States)

Zhang, Kaoping; Adams, Jonathan M; Shi, Yu; Yang, Teng; Sun, Ruibo; He, Dan; Ni, Yingying; Chu, Haiyan

2017-09-01

Rhizospheric fungi play major roles in both natural and agricultural ecosystems. However, little is known about the determinants of their diversity and biogeographic patterns. Here, we compared fungal communities in rhizosphere and bulk soils of wheat fields in the North China Plain. The rhizosphere had a lower fungal diversity (observed OTUs and Chao1) than bulk soil, and a distinct fungal community structure in rhizosphere compared with bulk soil. The relative importance of environmental factors and geographic distance for fungal distribution differed between rhizosphere and bulk soil. Environmental factors were the primary cause of variations in total fungal community and major fungal phyla in bulk soil. By contrast, fungal communities in soils loosely attached to roots were predictable from both environmental factors and influences of geographic distance. Communities in soils tightly attached to roots were mainly determined by geographic distance. Our results suggest that both contemporary environment processes (present-day abiotic and biotic environment characters) and historical processes (spatial isolation, dispersal limitation occurred in the past) dominate variations of fungal communities in wheat fields, but their relative importance of all these processes depends on the proximity of fungal community to the plant roots. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Soil treatment to remove uranium and related mixed radioactive contaminants. Final report September 1992--October 1995

International Nuclear Information System (INIS)

1996-07-01

A research and development project to remove uranium and related radioactive contaminants from soil by an ultrasonically-aided chemical leaching process began in 1993. The project objective was to develop and design, on the basis of bench-scale and pilot-scale experimental studies, a cost-effective soil decontamination process to produce a treated soil containing less than 35 pCi/g. The project, to cover a period of about thirty months, was designed to include bench-scale and pilot-scale studies to remove primarily uranium from the Incinerator Area soil, at Fernald, Ohio, as well as strontium-90, cobalt-60 and cesium-137 from a Chalk River soil, at the Chalk River Laboratories, Ontario. The project goal was to develop, design and cost estimate, on the basis of bench-scale and pilot-scale ex-situ soil treatment studies, a process to remove radionuclides form the soils to a residual level of 35 pCi/g of soil or less, and to provide a dischargeable water effluent as a result of soil leaching and a concentrate that can be recovered for reuse or solidified as a waste for disposal. In addition, a supplementary goal was to test the effectiveness of in-situ soil treatment through a field study using the Chalk River soil

Intercropping enhances productivity and maintains the most soil fertility properties relative to sole cropping.

Directory of Open Access Journals (Sweden)

Zhi-Gang Wang

Full Text Available Yield and nutrient acquisition advantages are frequently found in intercropping systems. However, there are few published reports on soil fertility in intercropping relative to monocultures. A field experiment was therefore established in 2009 in Gansu province, northwest China. The treatments comprised maize/faba bean, maize/soybean, maize/chickpea and maize/turnip intercropping, and their correspoding monocropping. In 2011 (the 3rd year and 2012 (the 4th year the yields and some soil chemical properties and enzyme activities were examined after all crop species were harvested or at later growth stages. Both grain yields and nutrient acquisition were significantly greater in all four intercropping systems than corresponding monocropping over two years. Generally, soil organic matter (OM did not differ significantly from monocropping but did increase in maize/chickpea in 2012 and maize/turnip in both years. Soil total N (TN did not differ between intercropping and monocropping in either year with the sole exception of maize/faba bean intercropping receiving 80 kg P ha-1 in 2011. Intercropping significantly reduced soil Olsen-P only in 2012, soil exchangeable K in both years, soil cation exchangeable capacity (CEC in 2012, and soil pH in 2012. In the majority of cases soil enzyme activities did not differ across all the cropping systems at different P application rates compared to monocrops, with the exception of soil acid phosphatase activity which was higher in maize/legume intercropping than in the corresponding monocrops at 40 kg ha-1 P in 2011. P fertilization can alleviate the decline in soil Olsen-P and in soil CEC to some extent. In summary, intercropping enhanced productivity and maintained the majority of soil fertility properties for at least three to four years, especially at suitable P application rates. The results indicate that maize-based intercropping may be an efficient cropping system for sustainable agriculture with carefully

Protein expression analysis of inflammation-related colon carcinogenesis

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Yasui Yumiko

2009-01-01

Full Text Available Background: Chronic inflammation is a risk factor for colorectal cancer (CRC development. The aim of this study was to determine the differences in protein expression between CRC and the surrounding nontumorous colonic tissues in the mice that received azoxymethane (AOM and dextran sodium sulfate (DSS using a proteomic analysis. Materials and Methods: Male ICR mice were given a single intraperitoneal injection of AOM (10 mg/kg body weight, followed by 2% (w/v DSS in their drinking water for seven days, starting one week after the AOM injection. Colonic adenocarcinoma developed after 20 weeks and a proteomics analysis based on two-dimensional gel electrophoresis and ultraflex TOF/TOF mass spectrometry was conducted in the cancerous and nontumorous tissue specimens. Results: The proteomic analysis revealed 21 differentially expressed proteins in the cancerous tissues in comparison to the nontumorous tissues. There were five markedly increased proteins (beta-tropomyosin, tropomyosin 1 alpha isoform b, S100 calcium binding protein A9, and an unknown protein and 16 markedly decreased proteins (Car1 proteins, selenium-binding protein 1, HMG-CoA synthase, thioredoxin 1, 1 Cys peroxiredoxin protein 2, Fcgbp protein, Cytochrome c oxidase, subunit Va, ETHE1 protein, and 7 unknown proteins. Conclusions: There were 21 differentially expressed proteins in the cancerous tissues of the mice that received AOM and DSS. Their functions include metabolism, the antioxidant system, oxidative stress, mucin production, and inflammation. These findings may provide new insights into the mechanisms of inflammation-related colon carcinogenesis and the establishment of novel therapies and preventative strategies to treat carcinogenesis in the inflamed colon.

Relative Density of Backfilled Soil Material around Monopiles for Offshore Wind Turbines

DEFF Research Database (Denmark)

Sørensen, Søren Peder Hyldal; Ibsen, Lars Bo; Frigaard, Peter

2012-01-01

The relative density of backfilled soil material around offshore monopiles is assessed through experimental testing in the Large Wave Channel (GWK) of the Coastal Research Centre (FZK) in Hannover. The relative density of the backfill material was found to vary between 65 and 80 %. The dependency...... of the relative density of backfill on the maximum pile bending moment is assessed through three-dimensional numerical modeling of a monopile foundation located at the offshore wind farm at Horns Reef, Denmark....

Seasonal abundance of soil arthropods in relation to meteorological and edaphic factors in the agroecosystems of Faisalabad, Punjab, Pakistan

Science.gov (United States)

Shakir, Muhammad Mussadiq; Ahmed, Sohail

2015-05-01

Soil arthropods are an important component of agroecosystems, contributing significantly to their biodiversity and functioning. However, seasonal patterns, population dynamics, and significant roles of these soil arthropods in improvement of soil structures and functions are influenced by many factors. The objective of the current study was to investigate soil arthropod abundance in relation to a blend of meteorological and edaphic factors and to find out the difference in abundance among various crops (sugarcane, cotton, wheat, alfalfa fodder, and citrus orchards). The arthropod sampling was done by pitfall traps and Tullgren extractions on fortnightly intervals. Soil temperature and relative humidity were noted on the field sites while analysis for soil pH, organic matter, and soil moisture contents were done in the laboratory. The rainfall data was obtained from an observatory. Results showed that significant differences were found in soil arthropod abundance across different sampling months and crops. Out of total 13,673 soil arthropods sampled, 38 % belonged to Collembola, followed by 15 % Hymenoptera, 15 % Acarina, 11 % Myriapods, 6 % Coleoptera, 5 % Orthoptera, and 5 % Araneae. Mean abundance per sample was highest in summer months as compared to winter. Overall abundance per sample was significantly different between all crops ( p Aranae, Coleoptera), least abundant (Dermaptera, Hemiptera, Diptera), and rare (Blattaria, Isoptera, Diplura, Lepidoptera). Soil temperature and soil organic matter showed significant positive correlation with abundance, while relative humidity was significantly negatively correlated. Soil moisture and soil pH showed no significant correlations while no correlation was found with total rainfall. PCA analysis revealed that soil surface arthropods were the major contributors of variation in overall abundance in extreme temperature months while microarthropods in low-temperature months. CCA analysis revealed the occurrence of

Seasonal abundance of soil arthropods in relation to meteorological and edaphic factors in the agroecosystems of Faisalabad, Punjab, Pakistan.

Science.gov (United States)

Shakir, Muhammad Mussadiq; Ahmed, Sohail

2015-05-01

Soil arthropods are an important component of agroecosystems, contributing significantly to their biodiversity and functioning. However, seasonal patterns, population dynamics, and significant roles of these soil arthropods in improvement of soil structures and functions are influenced by many factors. The objective of the current study was to investigate soil arthropod abundance in relation to a blend of meteorological and edaphic factors and to find out the difference in abundance among various crops (sugarcane, cotton, wheat, alfalfa fodder, and citrus orchards). The arthropod sampling was done by pitfall traps and Tullgren extractions on fortnightly intervals. Soil temperature and relative humidity were noted on the field sites while analysis for soil pH, organic matter, and soil moisture contents were done in the laboratory. The rainfall data was obtained from an observatory. Results showed that significant differences were found in soil arthropod abundance across different sampling months and crops. Out of total 13,673 soil arthropods sampled, 38 % belonged to Collembola, followed by 15 % Hymenoptera, 15 % Acarina, 11 % Myriapods, 6 % Coleoptera, 5 % Orthoptera, and 5 % Araneae. Mean abundance per sample was highest in summer months as compared to winter. Overall abundance per sample was significantly different between all crops (p arthropods according to abundance, i.e., highly abundant (Collembola, Acarina, Myripoda, Hymenoptera), moderately abundant (Orthoptera, Aranae, Coleoptera), least abundant (Dermaptera, Hemiptera, Diptera), and rare (Blattaria, Isoptera, Diplura, Lepidoptera). Soil temperature and soil organic matter showed significant positive correlation with abundance, while relative humidity was significantly negatively correlated. Soil moisture and soil pH showed no significant correlations while no correlation was found with total rainfall. PCA analysis revealed that soil surface arthropods were the major contributors of variation in overall

Isotopic tracer studies to evaluate relative efficiency of different forms of P for growing rice on different soil types

International Nuclear Information System (INIS)

Dash, R.N.; Mohanty, S.K.; Patnaik, S.

1977-01-01

The relative efficiency of different forms of P in relation to their time of application for growing rice on different soil types has been studied by using 32 P tagged mono-, di-, and tri-calcium phosphate, ammonium nitrate phosphate containing all the P in the citrate-soluble form and potassium meta-phosphate. P-deficient acid laterite soil from Burdwan, red loam soil from Peramanpur and calcareous black soil from Hyderabad were used in the study. The different P forms were found to be compatible in the acid, red and laterite soils when the phosphorus forms were primed to moist acid soils 2 weeks prior to flooding. On application at flooding, fertilizers containing citrate-soluble phosphate were found to be less effective as compared to those containing water-soluble phosphate. In the calcareous black soil, however, the fertilizers, containing insoluble or citrate-soluble phosphates were not as efficient as the water-soluble forms, possibly because of lack of dissolution process. Potassium meta-phosphate was found to be effective in all the soil types whether applied at flooding or primed to the moist soil. (M.G.B.)

Biological soil crusts in deserts: A short review of their role in soil fertility, stabilization, and water relations

Science.gov (United States)

Belnap, Jayne

2003-01-01

Cyanobacteria and cyanolichens dominate most desert soil surfaces as the major component of biological soil crusts (BSC). BSCs contribute to soil fertility in many ways. BSC can increase weathering of parent materials by up to 100 times. Soil surface biota are often sticky, and help retain dust falling on the soil surface; this dust provides many plant-essential nutrients including N, P, K, Mg, Na, Mn, Cu, and Fe. BSCs also provide roughened soil surfaces that slow water runoff and aid in retaining seeds and organic matter. They provide inputs of newly-fixed carbon and nitrogen to soils. They are essential in stabilizing soil surfaces by linking soil particles together with filamentous sheaths, enabling soils to resist both water and wind erosion. These same sheaths are important in keeping soil nutrients from becoming bound into plant-unavailable forms. Experimental disturbances applied in US deserts show soil surface impacts decrease N and C inputs from soil biota by up to 100%. The ability to hold aeolian deposits in place is compromised, and underlying soils are exposed to erosion. While most undisturbed sites show little sediment production, disturbance by vehicles or livestock produces up to 36 times more sediment production, with soil movement initiated at wind velocities well below commonly-occurring wind speeds. Winds across disturbed areas can quickly remove this material from the soil surface, thereby potentially removing much of current and future soil fertility. Thus, reduction in the cover of cyanophytes in desert soils can both reduce fertility inputs and accelerate fertility losses.

Rehabilitation materials from surface- coal mines in western U.S.A. III. Relations between elements in mine soil and uptake by plants.

Science.gov (United States)

Severson, R.C.; Gough, L.P.

1984-01-01

Plant uptake of Cd, Co, Cu, Fe, Mn, Ni, Pb and Zn from mine soils was assessed using alfalfa Medicago sativa, sainfoin Onobrychis viciaefolia, smooth brome Bromus inermis, crested wheatgrass Agropyron cristatum, slender wheatgrass A. trachycaulum and intermediate wheatgrass A. intermedium; mine soil (cover-soil and spoil material) samples were collected from rehabilitated areas of 11 western US surface-coal mines in North Dakota, Montana, Wyoming and Colorado. Correlations between metals in plants and DTPA-extractable metals from mine soils were generally not statistically significant and showed no consistent patterns for a single metal or for a single plant species. Metal uptake by plants, relative to amounts in DTPA extracts of mine soil, was positively related to mine soil organic matter content or negatively related to mine soil pH. DTPA-extractable metal levels were significantly correlated with mine soil pH and organic-matter content.-from Authors

Soil invertebrates as bioindicators of urban soil quality

International Nuclear Information System (INIS)

Santorufo, Lucia; Van Gestel, Cornelis A.M.; Rocco, Annamaria; Maisto, Giulia

2012-01-01

This study aimed at relating the abundance and diversity of invertebrate communities of urban soils to chemical and physical soil characteristics and to identify the taxa most sensitive or tolerant to soil stressors. The invertebrate community of five urban soils in Naples, Italy, was sampled. To assess soil quality invertebrate community indices (Shannon, Simpson, Menhinick and Pielou indices), Acarina/Collembola ratios, and the soil biological quality index (QBS) were calculated. The chemical and physical characteristics of the soils strongly differed. Abundance rather than taxa richness of invertebrates were more affected by soil characteristics. The community was more abundant and diverse in the soils with high organic matter and water content and low metal (Cu, Pb, Zn) concentrations. The taxa more resistant to the urban environment included Acarina, Enchytraeids, Collembola and Nematoda. Collembolans appeared particularly sensitive to changing soil properties. Among the investigated indices, QBS seems most appropriate for soil quality assessment. - Highlights: ► The abundance and diversity of invertebrate communities was related to properties and metal contents of urban soils. ► Several (biodiversity) indices were calculated and compared to evaluate soil quality. ► Metal contamination affected invertebrate density and diversity. ► The taxa more tolerant to metal contamination were Acarina, Enchytraeids, Collembola and Nematoda. ► The soil biological quality index QBS index was most appropriate for soil quality assessment. - Soil metal contamination negatively affected soil invertebrate abundance and diversity.

Identifying Novel Candidate Genes Related to Apoptosis from a Protein-Protein Interaction Network

Directory of Open Access Journals (Sweden)

Baoman Wang

2015-01-01

Full Text Available Apoptosis is the process of programmed cell death (PCD that occurs in multicellular organisms. This process of normal cell death is required to maintain the balance of homeostasis. In addition, some diseases, such as obesity, cancer, and neurodegenerative diseases, can be cured through apoptosis, which produces few side effects. An effective comprehension of the mechanisms underlying apoptosis will be helpful to prevent and treat some diseases. The identification of genes related to apoptosis is essential to uncover its underlying mechanisms. In this study, a computational method was proposed to identify novel candidate genes related to apoptosis. First, protein-protein interaction information was used to construct a weighted graph. Second, a shortest path algorithm was applied to the graph to search for new candidate genes. Finally, the obtained genes were filtered by a permutation test. As a result, 26 genes were obtained, and we discuss their likelihood of being novel apoptosis-related genes by collecting evidence from published literature.

Soil Characteristics Driving Arbuscular Mycorrhizal Fungal Communities in Semiarid Mediterranean Soils.

Science.gov (United States)

Alguacil, Maria Del Mar; Torres, Maria Pilar; Montesinos-Navarro, Alicia; Roldán, Antonio

2016-06-01

We investigated communities of arbuscular mycorrhizal fungi (AMF) in the roots and the rhizosphere soil of Brachypodium retusum in six different natural soils under field conditions. We explored phylogenetic patterns of AMF composition using indicator species analyses to find AMF associated with a given habitat (root versus rhizosphere) or soil type. We tested whether the AMF characteristics of different habitats or contrasting soils were more closely related than expected by chance. Then we used principal-component analysis and multivariate analysis of variance to test for the relative contribution of each factor in explaining the variation in fungal community composition. Finally, we used redundancy analysis to identify the soil properties that significantly explained the differences in AMF communities across soil types. The results pointed out a tendency of AMF communities in roots to be closely related and different from those in the rhizosphere soil. The indicator species analyses revealed AMF associated with rhizosphere soil and the root habitat. Soil type also determined the distribution of AMF communities in soils, and this effect could not be attributed to a single soil characteristic, as at least three soil properties related to microbial activity, i.e., pH and levels of two micronutrients (Mn and Zn), played significant roles in triggering AMF populations. Communities of arbuscular mycorrhizal fungi (AMF) are main components of soil biota that can determine the productivity of ecosystems. These fungal assemblages vary across host plants and ecosystems, but the main ecological processes that shape the structures of these communities are still largely unknown. A field study in six different soil types from semiarid areas revealed that AMF communities are significantly influenced by habitat (soil versus roots) and soil type. In addition, three soil properties related to microbiological activity (i.e., pH and manganese and zinc levels) were the main factors

Soil Characteristics Driving Arbuscular Mycorrhizal Fungal Communities in Semiarid Mediterranean Soils

Science.gov (United States)

Torres, Maria Pilar; Montesinos-Navarro, Alicia; Roldán, Antonio

2016-01-01

ABSTRACT We investigated communities of arbuscular mycorrhizal fungi (AMF) in the roots and the rhizosphere soil of Brachypodium retusum in six different natural soils under field conditions. We explored phylogenetic patterns of AMF composition using indicator species analyses to find AMF associated with a given habitat (root versus rhizosphere) or soil type. We tested whether the AMF characteristics of different habitats or contrasting soils were more closely related than expected by chance. Then we used principal-component analysis and multivariate analysis of variance to test for the relative contribution of each factor in explaining the variation in fungal community composition. Finally, we used redundancy analysis to identify the soil properties that significantly explained the differences in AMF communities across soil types. The results pointed out a tendency of AMF communities in roots to be closely related and different from those in the rhizosphere soil. The indicator species analyses revealed AMF associated with rhizosphere soil and the root habitat. Soil type also determined the distribution of AMF communities in soils, and this effect could not be attributed to a single soil characteristic, as at least three soil properties related to microbial activity, i.e., pH and levels of two micronutrients (Mn and Zn), played significant roles in triggering AMF populations. IMPORTANCE Communities of arbuscular mycorrhizal fungi (AMF) are main components of soil biota that can determine the productivity of ecosystems. These fungal assemblages vary across host plants and ecosystems, but the main ecological processes that shape the structures of these communities are still largely unknown. A field study in six different soil types from semiarid areas revealed that AMF communities are significantly influenced by habitat (soil versus roots) and soil type. In addition, three soil properties related to microbiological activity (i.e., pH and manganese and zinc levels

White poplar (Populus alba L. - Litter impact on chemical and biochemical parameters related to nitrogen cycle in contaminated soils

Directory of Open Access Journals (Sweden)

Paula Madejon

2014-04-01

Full Text Available Aim of study: The aim of this study was to determine the effect of litter from Populus alba on chemical and biochemical properties related to the N cycle in soils with different pH values and trace element contents. We hypothesized that this litter would influence several parameters related to the N cycle and consequently to soil health.Area of study: we collected two reforested contaminated soils of different pH values (AZ pH 7.23 and DO pH = 2.66 and a non-contaminated soil (RHU pH 7.19.Materials and methods: Soil samples were placed in 2,000 cm3 microcosms and were incubated for 40 weeks in controlled conditions. Each soil was mixed with its corresponding litter, and soils without litter were also tested for comparison. Ammonium (NH4+-N and nitrate (NO3–-N content, potential nitrification rate (PNR, microbial biomass nitrogen (MBN, protease activity, and several chemical properties such as pH, available trace element concentrations (extracted with 0.01 M CaCl2 were determined at different times of incubation.Main results: Values of available trace elements did not vary during the incubation and were always higher in acid soil. In neutral soils litter presence increased values of Kjeldahl-N, NO3–-N content, potential nitrification rate (PNR, microbial biomass nitrogen (MBN and protease activity. Presence of trace elements in neutral soils did not alter the parameters studied. However, acidic pH and high content of available trace elements strongly affected NH4+-N andNO3–-N, microbial biomass N and protease activity.Research highlights: Our results showed the negative effect of the acidity and trace element availability in parameters related with the N-cycle.Key words: microbial biomass N; protease activity; soil pH; N mineralization; nitrification; phytoremediation.

The role of herbaceous crops in soil carbon and nitrogen cycles in relation to soil management . methodological approaches and innovative technologies

International Nuclear Information System (INIS)

Mohamed, M.A.A.

2010-01-01

Soil organic matter is an important pool within the total organic carbon of the planet,being equal to twice that if the atmosphere and three times the biotic one.Organic carbon sequestration in agricultural soils is therefore considered one of the most effective tools to counterbalance the emission of CO 2 from fossil fuels combustion. The role of below ground plant parts in carbon sequestration is much more difficult that of above.ground parts because of the open issues about the determination of root biometrics and root exhudates. Recent literature indicates that root biomass is probably much larger than classically believed and that root surface where exhudation occurs is also underestimated, and so is its role in the rhizosphere.The general objective of this thesis is the evaluation of carbon sequestration in sorghum as a function of soil management. A specific objective is to approach methodological problems relevant to the accurate quantification of the contribution of below ground plant structures to athmosferic carbon sequestration. This objective will be approached through a thorough review of the literature and an experimental setup with different soil management systems in relation to organic matter. In the review special attention is given to the applied tracer methods. The contribution of plant derived organic substances to the SOM turnover obtained with 13 C natural abundance is also reviewed. A related objective is the monitoring of nitrogen dynamics discriminating the contribution of organic matter applied to the soil. In addition to organic C, soil may also contain inorganic C in the form of carbonates. This is of particular relevance to dry lands because calcification and formation of secondary carbonate is an important process in arid and semi-arid regions. Consequently the largest accumulations of carbonate occur in the soils of arid and semi-arid areas. Dynamics of the inorganic carbon pool are poorly understood although it is normally quite

Oxidation of DNA, proteins and lipids by DOPA, protein-bound DOPA, and related catechol(amine)s

DEFF Research Database (Denmark)

Pattison, David I; Dean, Roger T; Davies, Michael Jonathan

2002-01-01

Incubation of free 3,4-dihydroxyphenylalanine (DOPA), protein-bound DOPA (PB-DOPA) and related catechols with DNA, proteins and lipids has been shown to result in oxidative damage to the target molecule. This article reviews these reactions with particular emphasis on those that occur in the pres......Incubation of free 3,4-dihydroxyphenylalanine (DOPA), protein-bound DOPA (PB-DOPA) and related catechols with DNA, proteins and lipids has been shown to result in oxidative damage to the target molecule. This article reviews these reactions with particular emphasis on those that occur...... in the presence of molecular O(2) and redox-active metal ions (e.g. Fe(3+), Cu(2+), Cr(6+)), which are known to increase the rate of DOPA oxidation. The majority of oxidative damage appears to be mediated by reactive oxygen species (ROS) such as superoxide and HO(.) radicals, though other DOPA oxidation products...

Soil-Related Input Parameters for the Biosphere Model

International Nuclear Information System (INIS)

Smith, A. J.

2004-01-01

This report presents one of the analyses that support the Environmental Radiation Model for Yucca Mountain Nevada (ERMYN). The ''Biosphere Model Report'' (BSC 2004 [DIRS 169460]) describes the details of the conceptual model as well as the mathematical model and the required input parameters. The biosphere model is one of a series of process models supporting the postclosure Total System Performance Assessment (TSPA) for the Yucca Mountain repository. A schematic representation of the documentation flow for the Biosphere input to TSPA is presented in Figure 1-1. This figure shows the evolutionary relationships among the products (i.e., analysis and model reports) developed for biosphere modeling, and the biosphere abstraction products for TSPA, as identified in the ''Technical Work Plan for Biosphere Modeling and Expert Support'' (TWP) (BSC 2004 [DIRS 169573]). This figure is included to provide an understanding of how this analysis report contributes to biosphere modeling in support of the license application, and is not intended to imply that access to the listed documents is required to understand the contents of this report. This report, ''Soil-Related Input Parameters for the Biosphere Model'', is one of the five analysis reports that develop input parameters for use in the ERMYN model. This report is the source documentation for the six biosphere parameters identified in Table 1-1. The purpose of this analysis was to develop the biosphere model parameters associated with the accumulation and depletion of radionuclides in the soil. These parameters support the calculation of radionuclide concentrations in soil from on-going irrigation or ash deposition and, as a direct consequence, radionuclide concentration in other environmental media that are affected by radionuclide concentrations in soil. The analysis was performed in accordance with the TWP (BSC 2004 [DIRS 169573]) where the governing procedure was defined as AP-SIII.9Q, ''Scientific Analyses''. This

Peat decomposability in managed organic soils in relation to land use, organic matter composition and temperature

Science.gov (United States)

Bader, Cédric; Müller, Moritz; Schulin, Rainer; Leifeld, Jens

2018-02-01

Organic soils comprise a large yet fragile carbon (C) store in the global C cycle. Drainage, necessary for agriculture and forestry, triggers rapid decomposition of soil organic matter (SOM), typically increasing in the order forest accrual of labile crop residues. A comparison with published CO2 rates from incubated mineral soils indicated no difference in SOM decomposability between these soil classes, suggesting that accumulation of recent, labile plant materials that presumably account for most of the evolved CO2 is not systematically different between mineral and organic soils. In our data set, temperature sensitivity of decomposition (Q10 on average 2.57 ± 0.05) was the same for all land uses but lowest below 60 cm in croplands and grasslands. This, in turn, indicates a relative accumulation of recalcitrant peat in topsoils.

Seasonal Variation in Soil Microbial Biomass, Bacterial Community Composition and Extracellular Enzyme Activity in Relation to Soil Respiration in a Northern Great Plains Grassland

Science.gov (United States)

Wilton, E.; Flanagan, L. B.

2014-12-01

Soil respiration rate is affected by seasonal changes in temperature and moisture, but is this a direct effect on soil metabolism or an indirect effect caused by changes in microbial biomass, bacterial community composition and substrate availability? In order to address this question, we compared continuous measurements of soil and plant CO2 exchange made with an automatic chamber system to analyses conducted on replicate soil samples collected on four dates during June-August. Microbial biomass was estimated from substrate-induced respiration rate, bacterial community composition was determined by 16S rRNA amplicon pyrosequencing, and β-1,4-N-acetylglucosaminidase (NAGase) and phenol oxidase enzyme activities were assayed fluorometrically or by absorbance measurements, respectively. Soil microbial biomass declined from June to August in strong correlation with a progressive decline in soil moisture during this time period. Soil bacterial species richness and alpha diversity showed no significant seasonal change. However, bacterial community composition showed a progressive shift over time as measured by Bray-Curtis dissimilarity. In particular, the change in community composition was associated with increasing relative abundance in the alpha and delta classes, and declining abundance of the beta and gamma classes of the Proteobacteria phylum during June-August. NAGase showed a progressive seasonal decline in potential activity that was correlated with microbial biomass and seasonal changes in soil moisture. In contrast, phenol oxidase showed highest potential activity in mid-July near the time of peak soil respiration and ecosystem photosynthesis, which may represent a time of high input of carbon exudates into the soil from plant roots. This input of exudates may stimulate the activity of phenol oxidase, a lignolytic enzyme involved in the breakdown of soil organic matter. These analyses indicated that seasonal change in soil respiration is a complex

Soil inoculation method determines the strength of plant-soil interactions

NARCIS (Netherlands)

Voorde, van de T.F.J.; Ruijten, M.; Putten, van der W.H.; Bezemer, T.M.

2012-01-01

There is increasing evidence that interactions between plants and biotic components of the soil influence plant productivity and plant community composition. Many plant–soil feedback experiments start from inoculating relatively small amounts of natural soil to sterilized bulk soil. These soil

Accumulation of Heavy Metals in Roadside Soil in Urban Area and the Related Impacting Factors.

Science.gov (United States)

Wang, Meie; Zhang, Haizhen

2018-05-24

Heavy metal contamination in roadside soil due to traffic emission has been recognized for a long time. However, seldom has been reported regarding identification of critical factors influencing the accumulation of heavy metals in urban roadside soils due to the frequent disturbances such as the repair of damaged roads and green belt maintanance. Heavy metals in the roadside soils of 45 roads in Xihu district, Hangzhou city were investigated. Results suggested the accumulation of Cu, Pb, Cd, Cr, and Zn in roadside soil was affected by human activity. However, only two sites had Pb and Zn excessing the standards for residential areas, respectively, according to Chinese Environmental Quality Standards for soils. The concentrations of Cu, Pb, Cd, and Zn were significantly and positively correlated to soil pH and organic matter. An insignificant correlation between the age of the roads or vegetation cover types and the concentration of heavy metals was found although they were reported closely relating to the accumulation of heavy metals in roadside soils of highways. The highest Pb, Cd, and Cr taking place in sites with heavy traffic and significant differences in the concentrations of Cu, Pb, Cd, and Zn among the different categories of roads suggested the contribution of traffic intensity. However, it was difficult to establish a quantitative relationship between traffic intensity and the concentrations of heavy metals in the roadside soil. It could be concluded that impaction of traffic emission on the accumulation of heavy metals in roadside soils in urban area was slight and soil properties such as pH and organic matters were critical factors influencing the retention of heavy metals in soils.

Bioavailability of radiocaesium in soil: parameterization using soil characteristics

Energy Technology Data Exchange (ETDEWEB)

Syssoeva, A.A.; Konopleva, I.V. [Russian Institute of Agricultural Radiology and Agroecology, Obninsk (Russian Federation)

2004-07-01

It has been shown that radiocaesium availability to plants strongly influenced by soil properties. For the best evaluation of TFs it necessary to use mechanistic models that predict radionuclide uptake by plants based on consideration of sorption-desorption and fixation-remobilization of the radionuclide in the soil as well as root uptake processes controlled by the plant. The aim of the research was to characterise typical Russian soils on the basis of the radiocaesium availability. The parameter of the radiocaesium availability in soils (A) has been developed which consist on radiocaesium exchangeability; CF -concentration factor which is the ratio of the radiocaesium in plant to that in soil solution; K{sub Dex} - exchangeable solid-liquid distribution coefficient of radiocaesium. The approach was tested for a wide range of Russian soils using radiocaesium uptake data from a barley pot trial and parameters of the radiocaesium bioavailability. Soils were collected from the arable horizons in different soil climatic zones of Russia and artificially contaminated by {sup 137}Cs. The classification of soils in terms of the radiocaesium availability corresponds quite well to observed linear relationship between {sup 137}Cs TF for barley and A. K{sub Dex} is related to the soil radiocaesium interception potential (RIP), which was found to be positively and strongly related to clay and physical clay (<0,01 mm) content. The {sup 137}Cs exchangeability were found to be in close relation to the soil vermiculite content, which was estimated by the method of Cs{sup +} fixation. It's shown radiocaesium availability to plants in soils under study can be parameterized through mineralogical soil characteristics: % clay and the soil vermiculite content. (author)

On the relative roles of hydrology, salinity, temperature, and root productivity in controlling soil respiration from coastal swamps (freshwater)

Science.gov (United States)

Krauss, Ken W.; Whitbeck, Julie L.; Howard, Rebecca J.

2012-01-01

Background and aims Soil CO2 emissions can dominate gaseous carbon losses from forested wetlands (swamps), especially those positioned in coastal environments. Understanding the varied roles of hydroperiod, salinity, temperature, and root productivity on soil respiration is important in discerning how carbon balances may shift as freshwater swamps retreat inland with sea-level rise and salinity incursion, and convert to mixed communities with marsh plants. Methods We exposed soil mesocosms to combinations of permanent flooding, tide, and salinity, and tracked soil respiration over 2 1/2 growing seasons. We also related these measurements to rates from field sites along the lower Savannah River, Georgia, USA. Soil temperature and root productivity were assessed simultaneously for both experiments. Results Soil respiration from mesocosms (22.7-1678.2 mg CO2 m-2 h-1) differed significantly among treatments during four of the seven sampling intervals, where permanently flooded treatments contributed to low rates of soil respiration and tidally flooded treatments sometimes contributed to higher rates. Permanent flooding reduced the overall capacity for soil respiration as soils warmed. Salinity did reduce soil respiration at times in tidal treatments, indicating that salinity may affect the amount of CO2 respired with tide more strongly than under permanent flooding. However, soil respiration related greatest to root biomass (mesocosm) and standing root length (field); any stress reducing root productivity (incl. salinity and permanent flooding) therefore reduces soil respiration. Conclusions Overall, we hypothesized a stronger, direct role for salinity on soil respiration, and found that salinity effects were being masked by varied capacities for increases in respiration with soil warming as dictated by hydrology, and the indirect influence that salinity can have on plant productivity.

Identification of the G13 (cAMP-response-element-binding protein-related protein) gene product related to activating transcription factor 6 as a transcriptional activator of the mammalian unfolded protein response.

Science.gov (United States)

Haze, K; Okada, T; Yoshida, H; Yanagi, H; Yura, T; Negishi, M; Mori, K

2001-04-01

Eukaryotic cells control the levels of molecular chaperones and folding enzymes in the endoplasmic reticulum (ER) by a transcriptional induction process termed the unfolded protein response (UPR). The mammalian UPR is mediated by the cis-acting ER stress response element consisting of 19 nt (CCAATN(9)CCACG), the CCACG part of which is considered to provide specificity. We recently identified the basic leucine zipper (bZIP) protein ATF6 as a mammalian UPR-specific transcription factor; ATF6 is activated by ER stress-induced proteolysis and binds directly to CCACG. Here we report that eukaryotic cells express another bZIP protein closely related to ATF6 in both structure and function. This protein encoded by the G13 (cAMP response element binding protein-related protein) gene is constitutively synthesized as a type II transmembrane glycoprotein anchored in the ER membrane and processed into a soluble form upon ER stress as occurs with ATF6. The proteolytic processing of ATF6 and the G13 gene product is accompanied by their relocation from the ER to the nucleus; their basic regions seem to function as a nuclear localization signal. Overexpression of the soluble form of the G13 product constitutively activates the UPR, whereas overexpression of a mutant lacking the activation domain exhibits a strong dominant-negative effect. Furthermore, the soluble forms of ATF6 and the G13 gene product are unable to bind to several point mutants of the cis-acting ER stress response element in vitro that hardly respond to ER stress in vivo. We thus concluded that the two related bZIP proteins are crucial transcriptional regulators of the mammalian UPR, and propose calling the ATF6 gene product ATF6alpha and the G13 gene product ATF6beta.

Soil sterilization affects aging-related sequestration and bioavailability of p,p'-DDE and anthracene to earthworms

International Nuclear Information System (INIS)

Slizovskiy, Ilya B.; Kelsey, Jason W.

2010-01-01

Laboratory experiments investigated the effects of soil sterilization and compound aging on the bioaccumulation of spiked p,p'-DDE and anthracene by Eisenia fetida and Lumbricus terrestris. Declines in bioavailability occurred as pollutant residence time in both sterile and non-sterile soils increased from 3 to 203 d. Accumulation was generally higher in sterile soils during initial periods of aging (from 3-103 d). By 203 d, however, bioavailability of the compounds was unaffected by sterilization. Gamma irradiation and autoclaving may have altered bioavailability by inducing changes in the chemistry of soil organic matter (SOM). The results support a dual-mode partitioning sorption model in which the SOM components associated with short-term sorption (the 'soft' or 'rubbery' phases) are more affected than are the components associated with long-term sorption (the 'glassy' or microcrystalline phases). Risk assessments based on data from experiments in which sterile soil was used could overestimate exposure and bioaccumulation of pollutants. - Soil sterilization affects aging-related sequestration of organic contaminants.

Soil physical properties affecting soil erosion in tropical soils

International Nuclear Information System (INIS)

Lobo Lujan, D.

2004-01-01

detachment. Studies on necessary kinetic energy to detach one kilogram of sediments by raindrop impact have shown that the minimum energy is required for particles of 0.125 mm. Particles between 0.063 to 0.250 mm are the most vulnerable to detachment. This means that soils with high content of particles into vulnerable range, for example silty loam, loamy, fine sandy, and sandy loam are the most susceptible soils to detachment. Many aspects of soil behaviour in the field such as hydraulic conductivity water retention, soil crusting, soil compaction, and workability are influenced strongly by the primary particles. In tropical soils also a negative relation between structure stability and particles of silt, fine sand and very fine sand has been found, this is attributed to low cohesiveness of these particles. The ability of a structure to persist is known as its stability. There are two principal types of stability: the ability of the soil to retain its structure under the action of water, and the ability of the soil to retain its structure under the action of external mechanical stresses. (e.g. by wheels). Both types of stability are related with susceptibility to erosion

Cold Climate Related Structural Sinks Accommodate Unusual Soil Constituents, Pinelands National Reserve, New Jersey, USA

Science.gov (United States)

Demitroff, M.; Lecompte, M. A.; Rock, B. N.

2009-12-01

Firestone and others proposed an extraterrestrial (ET) impact upon the Laurentide Ice Sheet 12,900 years ago led to abrupt climate change and left behind a distinct suite of microscopic soil markers. If so, then soil memory of such an extreme event should be apparent across a wide swath of ice-marginal North America. New Jersey’s Pine Barrens has a remarkably well-preserved record of Late Pleistocene soil structures that provide snapshots of rigorous climatic episodes, the youngest of which are potential reservoirs for ET markers. Cryogenic macrostructures are fissures related to episodic temperature and moisture extremes providing excellent chronostratigraphic control - unlike soil horizons that are often affected by denudation and pedogenic modification. Three distinct ground structures were sampled for evidence of infill-related ET markers: 1) two ground (soil) wedges (early Holocene?); 2) a younger sand-wedge cast (late-Wisconsinan?); and 3) an older sand-wedge cast (early-Wisconsinan?). Attendant host sediment and capping colluvium coversand samples were also collected for evidence of ET markers to detect potential source sinks. Our pedocomplex contained elements ranging from Miocene Cohansey Formation basement sands to early-Holocene fluvioeolian coversands. Scanning electron microscopy (SEM), transmission electron microscopy (TEM), and energy dispersive x-ray analysis (EDX) are being used to characterize soil constituents of interest. Carbon and luminescence dating are underway to provide geomorphic events timing associated with specific soil constituent trap formation. Fly ash collected from a coal-fired electrical plant 13-km distant was also examined. Several soil constituents atypical to the local petrology as currently understood were found. Infill from two ground (soil) wedges contained ~100,000 to ~500,000 magnetic spherules/kg, 25 to 50 translucent amber-colored spherules/kg, 250 to 500 carbon spherules/kg, charcoal, and pieces of glass-like carbon

Huntingtin-associated protein-1 (HAP1) regulates endocytosis and interacts with multiple trafficking-related proteins.

Science.gov (United States)

Mackenzie, Kimberly D; Lim, Yoon; Duffield, Michael D; Chataway, Timothy; Zhou, Xin-Fu; Keating, Damien J

2017-07-01

Huntingtin-associated protein 1 (HAP1) was initially identified as a binding partner of huntingtin, mutations in which underlie Huntington's disease. Subcellular localization and protein interaction data indicate that HAP1 may be important in vesicle trafficking, cell signalling and receptor internalization. In this study, a proteomics approach was used for the identification of novel HAP1-interacting partners to attempt to shed light on the physiological function of HAP1. Using affinity chromatography with HAP1-GST protein fragments bound to Sepharose columns, this study identified a number of trafficking-related proteins that bind to HAP1. Interestingly, many of the proteins that were identified by mass spectrometry have trafficking-related functions and include the clathrin light chain B and Sec23A, an ER to Golgi trafficking vesicle coat component. Using co-immunoprecipitation and GST-binding assays the association between HAP1 and clathrin light chain B has been validated in vitro. This study also finds that HAP1 co-localizes with clathrin light chain B. In line with a physiological function of the HAP1-clathrin interaction this study detected a dramatic reduction in vesicle retrieval and endocytosis in adrenal chromaffin cells. Furthermore, through examination of transferrin endocytosis in HAP1 -/- cortical neurons, this study has determined that HAP1 regulates neuronal endocytosis. In this study, the interaction between HAP1 and Sec23A was also validated through endogenous co-immunoprecipitation in rat brain homogenate. Through the identification of novel HAP1 binding partners, many of which have putative trafficking roles, this study provides us with new insights into the mechanisms underlying the important physiological function of HAP1 as an intracellular trafficking protein through its protein-protein interactions. Copyright © 2017 Elsevier Inc. All rights reserved.

White popular (Populus alba L.) - Litter impact on chemical and biochemical parameters related to nitrogen cycle in contaminated soils

Energy Technology Data Exchange (ETDEWEB)

Ciadamidaro, L.; Madejon, P.; Cabrera, F.; Madejon, E.

2014-06-01

Aim of study: The aim of this study was to determine the effect of litter from Populus alba on chemical and biochemical properties related to the N cycle in soils with different pH values and trace element contents. We hypothesized that this litter would influence several parameters related to the N cycle and consequently to soil health. Area of study: we collected two reforested contaminated soils of different pH values (AZ pH 7.23 and DO pH 2.66) and a non-contaminated soil (RHU pH 7.19). Materials and methods: Soil samples were placed in 2,000 cm{sup 3} microcosms and were incubated for 40 weeks in controlled conditions. Each soil was mixed with its corresponding litter, and soils without litter were also tested for comparison. Ammonium (NH{sub 4}{sup 4}+-N) and nitrate (NO{sub 3}{sup -} -N) content, potential nitrification rate (PNR), microbial biomass nitrogen (MBN), protease activity, and several chemical properties such as pH, available trace element concentrations (extracted with 0.01 M CaCl{sub 2}) were determined at different times of incubation. Main results: Values of available trace elements did not vary during the incubation and were always higher in acid soil. In neutral soils litter presence increased values of Kjeldahl-N, NO{sub 3} –-N content, potential nitrification rate (PNR), microbial biomass nitrogen (MBN) and protease activity. Presence of trace elements in neutral soils did not alter the parameters studied. However, acidic pH and high content of available trace elements strongly affected NH{sub 4}{sup +}-N and NO{sub 3}{sup -} -N, microbial biomass N and protease activity. Research highlights: Our results showed the negative effect of the acidity and trace element availability in parameters related with the N-cycle. (Author)

Factors related to outcomes in lupus-related protein-losing enteropathy.

Science.gov (United States)

Lim, Doo-Ho; Kim, Yong-Gil; Bae, Seung-Hyeon; Ahn, Soomin; Hong, Seokchan; Lee, Chang-Keun; Yoo, Bin

2015-11-01

Protein-losing enteropathy (PLE), characterized by severe hypoalbuminemia and peripheral edema, is a rare manifestation of systemic lupus erythematosus. This present study aimed to identify the distinctive features of lupus-related PLE and evaluate the factors related to the treatment response. From March 1998 to March 2014, the clinical data of 14 patients with lupus PLE and seven patients with idiopathic PLE from a tertiary center were reviewed. PLE was defined as a demonstration of protein leakage from the gastrointestinal tract by either technetium 99m-labelled human albumin scanning or fecal α1-antitrypsin clearance. A positive steroid response was defined as a return of serum albumin to ≥ 3.0 g/dL within 4 weeks after initial steroid monotherapy, and remission as maintenance of serum albumin ≥ 3.0 g/dL for at least 3 months. A high serum total cholesterol level was defined as a level of ≥ 240 mg/dL. The mean age of the lupus-related PLE patients was 37.0 years, and the mean follow-up duration was 55.8 months. Significantly higher erythrocyte sedimentation rate and serum total cholesterol levels were found for lupus PLE than for idiopathic PLE. Among the 14 patients with lupus PLE, eight experienced a positive steroid response, and the serum total cholesterol level was significantly higher in the positive steroid response group. A positive steroid response was associated with an initial high serum total cholesterol level and achievement of remission within 6 months. In lupus-related PLE, a high serum total cholesterol level could be a predictive factor for the initial steroid response, indicating a good response to steroid therapy alone.

PPI-IRO: A two-stage method for protein-protein interaction extraction based on interaction relation ontology

KAUST Repository

Li, Chuanxi

2014-01-01

Mining Protein-Protein Interactions (PPIs) from the fast-growing biomedical literature resources has been proven as an effective approach for the identifi cation of biological regulatory networks. This paper presents a novel method based on the idea of Interaction Relation Ontology (IRO), which specifi es and organises words of various proteins interaction relationships. Our method is a two-stage PPI extraction method. At fi rst, IRO is applied in a binary classifi er to determine whether sentences contain a relation or not. Then, IRO is taken to guide PPI extraction by building sentence dependency parse tree. Comprehensive and quantitative evaluations and detailed analyses are used to demonstrate the signifi cant performance of IRO on relation sentences classifi cation and PPI extraction. Our PPI extraction method yielded a recall of around 80% and 90% and an F1 of around 54% and 66% on corpora of AIMed and Bioinfer, respectively, which are superior to most existing extraction methods. Copyright © 2014 Inderscience Enterprises Ltd.

Protein Simulation Data in the Relational Model.

Science.gov (United States)

Simms, Andrew M; Daggett, Valerie

2012-10-01

High performance computing is leading to unprecedented volumes of data. Relational databases offer a robust and scalable model for storing and analyzing scientific data. However, these features do not come without a cost-significant design effort is required to build a functional and efficient repository. Modeling protein simulation data in a relational database presents several challenges: the data captured from individual simulations are large, multi-dimensional, and must integrate with both simulation software and external data sites. Here we present the dimensional design and relational implementation of a comprehensive data warehouse for storing and analyzing molecular dynamics simulations using SQL Server.

Biotic soil crusts in relation to topography, cheatgrass, and fire in the Columbia Basin, Washington

Science.gov (United States)

Ponzetti, Jeanne; McCune, B.; Pyke, David A.

2007-01-01

We studied lichen and bryophyte soil crust communities in a large public grazing allotment within a sagebrush steppe ecosystem in which the biotic soil crusts are largely intact. The allotment had been rested from grazing for 12 years, but experienced an extensive series of wildfires. In the 350, 4 ?? 0.5 m plots, stratified by topographic position, we found 60 species or species groups that can be distinguished in the field with a hand lens, averaging 11.5 species groups per plot. Lichen and bryophyte soil crust communities differed among topographic positions. Draws were the most disturbed, apparently from water erosion in a narrow channel and mass wasting from the steepened sides. Presumably because of this disturbance, draws had the lowest average species richness of all the topographic strata we examined. Biotic crust species richness and cover were inversely related to cover of the invasive annual, cheatgrass (Bromus tectorum), and positively related to cover of native bunchgrasses. Integrity of the biotic crust was more strongly related to cheatgrass than to fire. In general, we observed good recovery of crusts following fire, but only in those areas dominated by perennial bunchgrasses. We interpret the resilience of the biotic crust, in this case, to the low abundance of cheatgrass, low amounts of soil disturbance and high moss cover. These fires have not resulted in an explosion of the cheatgrass population, perhaps because of the historically low levels of livestock grazing.

Relationships between stability, maturity, water-extractable organic matter of municipal sewage sludge composts and soil functionality.

Science.gov (United States)

Sciubba, Luigi; Cavani, Luciano; Grigatti, Marco; Ciavatta, Claudio; Marzadori, Claudio

2015-09-01

Compost capability of restoring or enhancing soil quality depends on several parameters, such as soil characteristics, compost carbon, nitrogen and other nutrient content, heavy metal occurrence, stability and maturity. This study investigated the possibility of relating compost stability and maturity to water-extractable organic matter (WEOM) properties and amendment effect on soil quality. Three composts from municipal sewage sludge and rice husk (AN, from anaerobic wastewater treatment plants; AE, from aerobic ones; MIX, from both anaerobic and aerobic ones) have been analysed and compared to a traditional green waste compost (GM, from green manure, solid waste and urban sewage sludge). To this aim, WEOMs were characterized through chemical analysis; furthermore, compost stability was evaluated through oxygen uptake rate calculation and maturity was estimated through germination index determination, whereas compost impact on soil fertility was studied, in a lab-scale experiment, through indicators as inorganic nitrogen release, soil microbial biomass carbon, basal respiration rate and fluorescein di-acetate hydrolysis. The obtained results indicated that WEOM characterization could be useful to investigate compost stability (which is related to protein and phenol concentrations) and maturity (related to nitrate/ammonium ratio and degree of aromaticity) and then compost impact on soil functionality. Indeed, compost stability resulted inversely related to soil microbial biomass, basal respiration rate and fluorescein di-acetate hydrolysis when the products were applied to the soil.

Age-related differences in plasma proteins: how plasma proteins change from neonates to adults.

Directory of Open Access Journals (Sweden)

Vera Ignjatovic

Full Text Available The incidence of major diseases such as cardiovascular disease, thrombosis and cancer increases with age and is the major cause of mortality world-wide, with neonates and children somehow protected from such diseases of ageing. We hypothesized that there are major developmental differences in plasma proteins and that these contribute to age-related changes in the incidence of major diseases. We evaluated the human plasma proteome in healthy neonates, children and adults using the 2D-DIGE approach. We demonstrate significant changes in number and abundance of up to 100 protein spots that have marked differences in during the transition of the plasma proteome from neonate and child through to adult. These proteins are known to be involved in numerous physiological processes such as iron transport and homeostasis, immune response, haemostasis and apoptosis, amongst others. Importantly, we determined that the proteins that are differentially expressed with age are not the same proteins that are differentially expressed with gender and that the degree of phosphorylation of plasma proteins also changes with age. Given the multi-functionality of these proteins in human physiology, understanding the differences in the plasma proteome in neonates and children compared to adults will make a major contribution to our understanding of developmental biology in humans.

Chemical-Structural Changes of Organic Matter in a Semi-Arid Soil After Organic Amendment

Institute of Scientific and Technical Information of China (English)

C.NICOL(A)S; G.MASCIANDARO; T.HERN(A)NDEZ; C.GARCIA

2012-01-01

A 9-month incubation experiment using composted and non-composted amendments derived from vine pruning waste and sewage sludge was carried out to study the effects of the nature and stability of organic amendments on the structural composition of organic matter (OM) in a semi-arid soil. The changes of soil OM,both in the whole soil and in the extractable carbon with pyrophosphate,were evaluated by pyrolysis-gas chromatography and chemical analyses.By the end of the experiment,the soils amended with pruning waste exhibited less organic carbon loss than those receiving sewage sludge.The non-composted residues increased the aliphatic-pyrolytic products of the OM,both in the whole soil and also in the pyrophosphate extract,with the products derived from peptides and proteins being significantly higher.After 9 months,in the soils amended with pruning waste the relative abundance of phenolic-pyrolytic products derived from phenolic compounds,lignin and proteins in the whole soil tended to increase more than those in the soils amended with sewage sludge.However,the extractable OM with pyrophosphate in the soils amended with composted residues tended to have higher contents of these phenolic-pyrolytic products than that in non-composted ones.Thus,despite the stability of pruning waste,the composting of this material promoted the incorporation of phenolic compounds to the soil OM.The pyrolytic indices (furfural/pyrrole and aliphatic/aromatic ratios) showed the diminution of aliphatic compounds and the increase of aromatic compounds,indicating the stabilization of the OM in the amended soils after 9 months.In conclusion,the changes of soil OM depend on the nature and stability of the organic amendments,with composted vine pruning waste favouring humification.

Relating soil microbial activity to water content and tillage-induced differences in soil structure

DEFF Research Database (Denmark)

Schjønning, Per; Thomsen, Ingrid Kaag; Petersen, Søren O

2011-01-01

Several studies have identified optima in soil water content for aerobic microbial activity, and this has been ascribed to a balance between gas and solute diffusivity as limiting processes. We investigated the role of soil structure, as created by different tillage practices (moldboard ploughing......, MP, or shallow tillage, ST), in regulating net nitrification, applied here as an index of aerobic microbial activity. Intact soil cores were collected at 0–4 and 14–18 cm depth from a fine sandy (SAND) and a loamy (LOAM) soil. The cores were drained to one of seven matric potentials ranging from − 15...... content to a maximum and then decreased. This relationship was modelled with a second order polynomium. Model parameters did not show any tillage effect on the optimum water content, but the optimum coincided with a lower matric potential in ST (SAND: − 140 to –197 hPa; LOAM: − 37 to − 65 hPa) than in MP...

Structure and Function of Human Tyrosinase and Tyrosinase-Related Proteins

NARCIS (Netherlands)

Lai, Xuelei; Wichers, Harry J.; Soler-Lopez, Montserrat; Dijkstra, Bauke W.

2018-01-01

Melanin is the main pigment responsible for the color of human skin, hair and eye. Its biosynthesis requires three melanogenic enzymes, tyrosinase (TYR), and the tyrosinase-related proteins TYRP1 and TYRP2. The difficulty of isolating pure and homogeneous proteins from endogenous sources has

Soil radium, soil gas radon and indoor radon empirical relationships to assist in post-closure impact assessment related to near-surface radioactive waste disposal.

Science.gov (United States)

Appleton, J D; Cave, M R; Miles, J C H; Sumerling, T J

2011-03-01

Least squares (LS), Theil's (TS) and weighted total least squares (WTLS) regression analysis methods are used to develop empirical relationships between radium in the ground, radon in soil and radon in dwellings to assist in the post-closure assessment of indoor radon related to near-surface radioactive waste disposal at the Low Level Waste Repository in England. The data sets used are (i) estimated ²²⁶Ra in the < 2 mm fraction of topsoils (eRa226) derived from equivalent uranium (eU) from airborne gamma spectrometry data, (ii) eRa226 derived from measurements of uranium in soil geochemical samples, (iii) soil gas radon and (iv) indoor radon data. For models comparing indoor radon and (i) eRa226 derived from airborne eU data and (ii) soil gas radon data, some of the geological groupings have significant slopes. For these groupings there is reasonable agreement in slope and intercept between the three regression analysis methods (LS, TS and WTLS). Relationships between radon in dwellings and radium in the ground or radon in soil differ depending on the characteristics of the underlying geological units, with more permeable units having steeper slopes and higher indoor radon concentrations for a given radium or soil gas radon concentration in the ground. The regression models comparing indoor radon with soil gas radon have intercepts close to 5 Bq m⁻³ whilst the intercepts for those comparing indoor radon with eRa226 from airborne eU vary from about 20 Bq m⁻³ for a moderately permeable geological unit to about 40 Bq m⁻³ for highly permeable limestone, implying unrealistically high contributions to indoor radon from sources other than the ground. An intercept value of 5 Bq m⁻³ is assumed as an appropriate mean value for the UK for sources of indoor radon other than radon from the ground, based on examination of UK data. Comparison with published data used to derive an average indoor radon: soil ²²⁶Ra ratio shows that whereas the published data are

Low Proportion of Dietary Plant Protein among Athletes with Premenstrual Syndrome-Related Performance Impairment.

Science.gov (United States)

Yamada, Keiko; Takeda, Takashi

2018-02-01

Premenstrual syndrome (PMS) is psychosomatic disorder that are limited to the late luteal phase in the menstrual cycle. PMS could impair athletic performance. To investigate associations between proportions of dietary plant and animal protein and PMS-related impairment of athletic performance, we surveyed 135 female athletes aged 18-23 years attending Kindai University. Participants belonged to authorized university clubs, all of which have high rankings in Japanese university sports. Participants completed self-administered questionnaires on diet history, demographics, and PMS-related impairment of athletic performance. Total protein, animal protein, and plant protein intake were examined, and the proportion of dietary plant protein was calculated for each participant. We divided athletes into two groups: those without PMS-related impairment of athletic performance (n = 117) and those with PMS-related performance impairment (n = 18). A t-test was used to compare mean values and multivariable adjusted mean values between groups; adjustment variables were energy intake, body mass index, and daily training duration. Total protein intake was not significantly different between the groups. However, athletes whose performance was affected by PMS reported higher intake of animal protein (mean 50.6 g) than athletes whose performance was unaffected by PMS (mean 34.9 g). Plant protein intake was lower among athletes with PMS-related impairment (mean 25.4 g) than among athletes without impairment (mean 26.9 g). The proportion of dietary plant protein was lower among athletes with PMS-related impairment (39.3%) than those without impairment (45.9%). A low proportion of dietary plant protein may cause PMS-related athletic impairment among athletes.

Soil color - a window for public and educators to understands soils

Science.gov (United States)

Libohova, Zamir; Beaudette, Dylan; Wills, Skye; Monger, Curtis; Lindbo, David

2017-04-01

Soil color is one of the most visually striking properties recorded by soil scientists around the world. Soil color is an important characteristic related to soil properties such organic matter, parent materials, drainage. It is a simplified way for the public and educators alike to understand soils and their functions. Soil color is a quick measurement that can be recorded by people using color charts or digital cameras, offering an opportunity for the citizen science projects to contribute to soil science. The US Soil Survey has recorded soil colors using Munsell color system for over 20,000 soil types representing a wide range of conditions throughout the Unites States. The objective of this research was to generate a US soil color map based on color descriptions from the Official Series Descriptions (OSDs). A color calculator developed in R and ArcMap were used to spatially display the soil colors. Soil colors showed vertical trends related to soil depth and horizontal trends related to parent material and climate. Soil colors represent development processes depending upon environment and time that have influenced their appearance and geographic distribution. Dark colors represent soils that are rich in organic matter, such as the soils of the Midwest USA, which are some of the most fertile soils in the world. These soils are relatively "young" in that they developed over the last 20,000 years in materials left behind after continental Glaciers retreated and reflect long- term prairie vegetation that dominated this area prior to European settlements. Dark soils of the Pacific Northwest reflect the influence of forests (and volcanic activity) but are shallower and less fertile than the deep dark Midwest soils. Soils of the eastern and southern Coastal Plains are older and are enriched with iron oxides ('rust') which gives them their red coloring. Soils of flood plains, like the broad Mississippi Valley, have multi-colored soils that reflect the process of

Soil-Related Input Parameters for the Biosphere Model

Energy Technology Data Exchange (ETDEWEB)

A. J. Smith

2004-09-09

This report presents one of the analyses that support the Environmental Radiation Model for Yucca Mountain Nevada (ERMYN). The ''Biosphere Model Report'' (BSC 2004 [DIRS 169460]) describes the details of the conceptual model as well as the mathematical model and the required input parameters. The biosphere model is one of a series of process models supporting the postclosure Total System Performance Assessment (TSPA) for the Yucca Mountain repository. A schematic representation of the documentation flow for the Biosphere input to TSPA is presented in Figure 1-1. This figure shows the evolutionary relationships among the products (i.e., analysis and model reports) developed for biosphere modeling, and the biosphere abstraction products for TSPA, as identified in the ''Technical Work Plan for Biosphere Modeling and Expert Support'' (TWP) (BSC 2004 [DIRS 169573]). This figure is included to provide an understanding of how this analysis report contributes to biosphere modeling in support of the license application, and is not intended to imply that access to the listed documents is required to understand the contents of this report. This report, ''Soil-Related Input Parameters for the Biosphere Model'', is one of the five analysis reports that develop input parameters for use in the ERMYN model. This report is the source documentation for the six biosphere parameters identified in Table 1-1. The purpose of this analysis was to develop the biosphere model parameters associated with the accumulation and depletion of radionuclides in the soil. These parameters support the calculation of radionuclide concentrations in soil from on-going irrigation or ash deposition and, as a direct consequence, radionuclide concentration in other environmental media that are affected by radionuclide concentrations in soil. The analysis was performed in accordance with the TWP (BSC 2004 [DIRS 169573]) where the governing procedure

Relations between Agronomic Practice and Earthworms in Norwegian Arable Soils

OpenAIRE

Pommeresche, Reidun; Løes, Anne-Kristin

2009-01-01

This paper presents Norwegian studies of earthworms (density, biomass, burrows density, species, juvenile to adult ratios) in arable soil in Norway conducted during the last 20 years. The effects of crop rotations, fertilization, soil tillage and compaction on earthworms are presented, based on various field experiments. Geophagous (soil eating) species such as Aporrectodea caliginosa and A. rosea dominate the earthworm fauna in Norwegian arable soil. Lumbricus terrestris is also present; in ...

European Synergies for Soil-Related Training Provisions

Science.gov (United States)

Arnoult, Matthieu; Reynders, Suzanne; Dittmann, Marie; Lukac, Martin

2017-04-01

The University of Reading (UK) has created an original massive online open course (MOOC) the concepts and practices of Climate Smart Agriculture (CSA), a new approach to agriculture based on three principles: mitigation of climate change, adaptation to climate change, stable or increased productivity, and sustainable food security. Through 2 case studies (dairy farming and wine production) this MOOC is an opportunity to highlight the importance of soil conditions for farmers (e.g., organic matter content, erosion, leaching), an issue which had been overlooked but is now seen as an essential part of integrated farm management or techniques such as no-till farming. Furthermore, this 3-week course launching in January 2017 will be translated in several European languages in order to foster international interest in CSA from students across Europe, but also to create collaborative synergies with research partners. To that effect, collaborative work is under way between the University of Reading, INRA, and Agreenium to develop a soil-oriented MOOC, around the 4‰ Initiative to be launched by France in 2017/18. This session will present the existing MOOC material developed at Reading in the context of British and French farming, the current issues facing farmers with respect to soil, and how these will be addressed in the forthcoming MOOC to be developed in partnership with INRA and Agreenium. The use of online training provision to elicit interest in climate change in general and soil topics in particular will also be outlined.

Case studies related to the management of soil acidity and infertility in the West-African Moist Savannah

International Nuclear Information System (INIS)

Vanlauwe, B.; Sanginga, N.; Diels, J.; Merckx, R.

2006-01-01

Although the soil pH and base status of the soils in the West African Moist Savannah Zone (MSZ) are usually favourable, their buffer capacity is usually low, indicating that while soil acidity may not be a problem initially, inappropriate management of these soils may induce soil-acidity-related problems in the medium to long term. The current paper addresses 3 topics that are closely related to the management of soil pH (acidity) in the West African MSZ. A first experiment addressed the release of P from low reactivity phosphate rock (PR) by mixing it with various N fertilizers. Mixing ammonium-sulphate, urea, and calcium-ammonium nitrate with PR substantially enhanced the soil Olsen-P content, but not for soils with an initial pH above 5.5, while potassium nitrate did not change the Olsen-P content. Changes in soil pH could be predicted based on the production of nitrate from ammonium (nitrification) and the soil buffer capacity. A second experiment examined the changes in topsoil pH as affected by long term management based on the application of organic inputs derived from hedgerow trees (Leucaena leucocephala and Senna siamea), fertilizer, or both. Maize crop yields declined steadily over the 16 years studied, but the least so in the Senna + fertilizer treatment where in 2002 still 2.2 t ha -1 of maize were obtained. The fertilizer only treatment led to a yield of 0.4 t ha -1 in 2002, while the absolute control without any inputs yielded a mere 40 kg ha -1 in the same year. Nitrogen fertilizer use efficiency was usually higher in the Senna treatment compared to the control or the Leucaena treatment. Interactions between fertilizer and organic matter additions were negative for the Leucaena treatments in the first three years, and positive for the Senna treatment in the last 6 years. Trees had a positive effect on the maintenance of exchangeable cations in the topsoil. Exchangeable Ca, Mg and K - and hence ECEC - were only slightly reduced after 16 years of

Relative contributions of wind and water erosion to total soil loss and its effect on soil properties in sloping croplands of the Chinese Loess Plateau.

Science.gov (United States)

Tuo, Dengfeng; Xu, Mingxiang; Gao, Guangyao

2018-08-15

Wind and water erosion are two dominant types of erosion that lead to soil and nutrient losses. Wind and water erosion may occur simultaneously to varying extents in semi-arid regions. The contributions of wind and water erosion to total erosion and their effects on soil quality, however, remains elusive. We used cesium-137 ( 137 Cs) inventories to estimate the total soil erosion and used the Revised Universal Soil Loss Equation (RUSLE) to quantify water erosion in sloping croplands. Wind erosion was estimated from the subtraction of the two. We also used 137 Cs inventories to calculate total soil erosion and validate the relationships of the soil quality and erosion at different slope aspects and positions. The results showed that wind erosion (1460tkm -2 a -1 ) on northwest-facing slope was responsible for approximately 39.7% of the total soil loss, and water erosion (2216tkm -2 a -1 ) accounted for approximately 60.3%. The erosion rates were 58.8% higher on northwest- than on southeast-facing slopes. Northwest-facing slopes had lower soil organic carbon, total nitrogen, clay, and silt contents than southeast-facing slopes, and thus, the 137 Cs inventories were lower, and the total soil erosions were higher on the northwest-facing slopes. The variations in soil physicochemical properties were related to total soil erosion. The lowest 137 Cs inventories and nutrient contents were recorded at the upper positions on the northwest-facing slopes due to the successive occurrence of more severe wind and water erosion at the same site. The results indicated that wind and water could accelerate the spatial variability of erosion rate and soil properties and cause serious decreases in the nutrient contents in sloping fields. Our research could help researchers develop soil strategies to reduce soil erosion according to the dominant erosion type when it occurs in a hilly agricultural area. Copyright © 2018 Elsevier B.V. All rights reserved.

Effects of insecticidal crystal proteins (Cry proteins) produced by genetically modified maize (Bt maize) on the nematode Caenorhabditis elegans

International Nuclear Information System (INIS)

Höss, Sebastian; Menzel, Ralph; Gessler, Frank; Nguyen, Hang T.; Jehle, Johannes A.; Traunspurger, Walter

2013-01-01

The genetically modified maize MON89034 × MON88017 expresses different crystal (Cry) proteins with pesticidal activity against the European corn borer (Cry1.105; Cry2Ab2) and the Western corn root worm (Cry3Bb1). Non-target organisms, such as soil nematodes, might be exposed to the Cry proteins that enter the soil in course of crop growing. Therefore, the risk of those proteins for nematodes was assessed by testing their toxic effects on Caenorhabditis elegans. All three insecticidal Cry proteins showed dose-dependent inhibitory effects on C. elegans reproduction (EC50: 0.12–0.38 μmol L −1 ), however, at concentrations that were far above the expected soil concentrations. Moreover, a reduced toxicity was observed when Cry proteins were added jointly. A C. elegans mutant strain deficient for receptors for the nematicidal Cry5B was also resistant against Cry1.105 and Cry2Ab2, suggesting that these Cry proteins bound to the same or similar receptors as nematicidal Cry proteins and thereby affect the reproduction of C. elegans. -- Highlights: •Insecticidal Cry proteins dose-dependently inhibited the reproduction of C. elegans. •Mixture toxicity was lower than expected from concentration-additive single effects. •Genes for MAPK-defense-pathway were up-regulated in presence of Cry protein mixture. •Knock-out strains deficient for Cry5B-receptors showed lower susceptibility to insecticidal Cry proteins. •Toxicity of insecticidal Cry-proteins on C. elegans occurred at concentrations far above expected field concentrations. -- Insecticidal Cry proteins expressed by genetically modified maize act on nematodes via a similar mode of action as nematicidal Cry proteins, however, at concentrations far above expected soil levels

Ethylene-induced senescence-related gene expression requires protein synthesis

International Nuclear Information System (INIS)

Lawton, K.A.; Raghothama, K.G.; Woodson, W.R.

1990-01-01

We have investigated the effects of inhibiting protein synthesis on the ethylene-induced expression of 3 carnation senescence-related genes, pSR5, pSR8, and pSR12. Treatment of preclimacteric carnation petal discs with 1μg/ml of cycloheximide, a cytoplasmic protein synthesis inhibitor, for 3h inhibited protein synthesis by >80% as quantitated by the incorporation of [35S]methionine into protein. Pre-treatment of petal discs with cycloheximide prevented ethylene-induced SR transcript accumulation. Cycloheximide treatment of petal discs held in air did not result in increased levels of SR mRNA. These results indicate that ethylene does not interact with pre-formed factors but rather that the activation of SR gene expression by ethylene is mediated by labile protein factor(s) synthesized on cytoplasmic ribosomes. Experiments are currently underway to determine if cycloheximide exerts its effect at the transcriptional or post-transcriptional level

Diel hysteresis between soil respiration and soil temperature in a biological soil crust covered desert ecosystem.

Science.gov (United States)

Guan, Chao; Li, Xinrong; Zhang, Peng; Chen, Yongle

2018-01-01

Soil respiration induced by biological soil crusts (BSCs) is an important process in the carbon (C) cycle in arid and semi-arid ecosystems, where vascular plants are restricted by the harsh environment, particularly the limited soil moisture. However, the interaction between temperature and soil respiration remains uncertain because of the number of factors that control soil respiration, including temperature and soil moisture, especially in BSC-dominated areas. In this study, the soil respiration in moss-dominated crusts and lichen-dominated crusts was continuously measured using an automated soil respiration system over a one-year period from November 2015 to October 2016 in the Shapotou region of the Tengger Desert, northern China. The results indicated that over daily cycles, the half-hourly soil respiration rates in both types of BSC-covered areas were commonly related to the soil temperature. The observed diel hysteresis between the half-hourly soil respiration rates and soil temperature in the BSC-covered areas was limited by nonlinearity loops with semielliptical shapes, and soil temperature often peaked later than the half-hourly soil respiration rates in the BSC-covered areas. The average lag times between the half-hourly soil respiration rates and soil temperature for both types of BSC-covered areas were two hours over the diel cycles, and they were negatively and linearly related to the volumetric soil water content. Our results highlight the diel hysteresis phenomenon that occurs between soil respiration rates and soil temperatures in BSC-covered areas and the negative response of this phenomenon to soil moisture, which may influence total C budget evaluations. Therefore, the interactive effects of soil temperature and moisture on soil respiration in BSC-covered areas should be considered in global carbon cycle models of desert ecosystems.

Analysis of gene expression and proteomic profiles of clonal genotypes from Theobroma cacao subjected to soil flooding.

Science.gov (United States)

Bertolde, Fabiana Z; Almeida, Alex-Alan F; Pirovani, Carlos P

2014-01-01

Soil flooding causes changes in gene transcription, synthesis and degradation of proteins and cell metabolism. The main objective of this study was to understand the biological events of Theobroma cacao during soil flooding-induced stress, using the analyses of gene expression and activity of key enzymes involved in fermentation, as well as the identification of differentially expressed proteins by mass spectrometry in two contrasting genotypes for flooding tolerance (tolerant - TSA-792 and susceptible - TSH-774). Soil anoxia caused by flooding has led to changes in the expression pattern of genes associated with the biosynthesis of alcohol dehydrogenase (ADH), pyruvate decarboxylase (PDC) and lactate dehydrogenase (LDH) in leaves and roots of the two evaluated genotypes. Significant differences were observed between the enzyme activities of the two genotypes. Leaves and roots of the TSA-792 genotype showed higher ADH activity as compared to the TSH-774 genotype, whereas the activities of PDC and LDH have varied over the 96 h of soil flooding, being higher for TSA-792 genotype, at the initial stage, and TSH-774 genotype, at the final stage. Some of the identified proteins are those typical of the anaerobic metabolism-involved in glycolysis and alcoholic fermentation-and different proteins associated with photosynthesis, protein metabolism and oxidative stress. The ability to maintain glycolysis and induce fermentation was observed to play an important role in anoxia tolerance in cacao and may also serve to distinguish tolerant and susceptible genotypes in relation to this stressor.

PERSISTENCE IN SOIL OF TRANSGENIC PLANT PRODUCED BACILLUS THURINGIENSIS VAR. KURSTAKI O-ENDOTOXIN1

Science.gov (United States)

Transgenic plants that produce pesticidal proteins will release these proteins into the soil when these plants are incorporated into the soil by tillage or as leaf litter. Little is known about the fate and persistence of transgenic plant pesticidal products in the soil. We used ...

Soil microbes and soil respiration of Mongolian Steppe soils under grazing stress.

Science.gov (United States)

Bölter, Manfred; Krümmelbein, Julia; Horn, Rainer; Möller, Rolf; Scheltz, Annette

2012-04-01

Soils of Northern China were analysed for their microbiological and soil physical properties with respect to different grazing stress. An important factor for this is soil compaction and related aeration due to pore size shifts. Bulk density increases significantly with increasing grazing intensity and soil carbon contents show decreasing values from top to depth. Organic carbon (LOI) concentrations decrease significantly with increasing grazing intensity. The data on LOI (2-5.8%) approximate 10-30 mg C, our data on glucose show values between 0.4-1.2 mg, i.e. approx. 4% of total carbon. Numbers and biomass of bacteria show generally a decreasing trend of those data at grazed and ungrazed sites, numbers range between 0.4 and 8.7 x10(8) g(-1) d.wt., bacterial biomass between 0.4 and 3.8 microg Cg(-1). This need to be recorded in relation to soil compaction and herewith-hampered aeration and nutrient flow. The temperature-respiration data also allow getting an idea of the Q10-values for soil respiration. The data are between 2.24 (5-15 degrees C) and 1.2 (25-35 degrees C). Our data are presented with a general review of biological properties of Mongolian Steppe soils.

Soil Microbial and Faunal Community Responses to Bt-Maize and Insecticide in Two Soils

DEFF Research Database (Denmark)

Griffiths, B. S.; Caul, S.; Thompson, J.

2006-01-01

The effects of maize (Zea mays L.), genetically modified to express the Cry1Ab protein (Bt), and an insecticide on soil microbial and faunal communities were assessed in a glasshouse experiment. Soil for the experiment was taken from field sites where the same maize cultivars were grown to allow...

Seasonality in ENSO-related precipitation, river discharges, soil moisture, and vegetation index in Colombia

Science.gov (United States)

Poveda, GermáN.; Jaramillo, Alvaro; Gil, Marta MaríA.; Quiceno, Natalia; Mantilla, Ricardo I.

2001-08-01

An analysis of hydrologic variability in Colombia shows different seasonal effects associated with El Niño/Southern Oscillation (ENSO) phenomenon. Spectral and cross-correlation analyses are developed between climatic indices of the tropical Pacific Ocean and the annual cycle of Colombia's hydrology: precipitation, river flows, soil moisture, and the Normalized Difference Vegetation Index (NDVI). Our findings indicate stronger anomalies during December-February and weaker during March-May. The effects of ENSO are stronger for streamflow than for precipitation, owing to concomitant effects on soil moisture and evapotranspiration. We studied time variability of 10-day average volumetric soil moisture, collected at the tropical Andes of central Colombia at depths of 20 and 40 cm, in coffee growing areas characterized by shading vegetation ("shaded coffee"), forest, and sunlit coffee. The annual and interannual variability of soil moisture are highly intertwined for the period 1997-1999, during strong El Niño and La Niña events. Soil moisture exhibited greater negative anomalies during 1997-1998 El Niño, being strongest during the two dry seasons that normally occur in central Colombia. Soil moisture deficits were more drastic at zones covered by sunlit coffee than at those covered by forest and shaded coffee. Soil moisture responds to wetter than normal precipitation conditions during La Niña 1998-1999, reaching maximum levels throughout that period. The probability density function of soil moisture records is highly skewed and exhibits different kinds of multimodality depending upon land cover type. NDVI exhibits strong negative anomalies throughout the year during El Niños, in particular during September-November (year 0) and June-August (year 0). The strong negative relation between NDVI and El Niño has enormous implications for carbon, water, and energy budgets over the region, including the tropical Andes and Amazon River basin.

cuticleDB: a relational database of Arthropod cuticular proteins

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Willis Judith H

2004-09-01

Full Text Available Abstract Background The insect exoskeleton or cuticle is a bi-partite composite of proteins and chitin that provides protective, skeletal and structural functions. Little information is available about the molecular structure of this important complex that exhibits a helicoidal architecture. Scores of sequences of cuticular proteins have been obtained from direct protein sequencing, from cDNAs, and from genomic analyses. Most of these cuticular protein sequences contain motifs found only in arthropod proteins. Description cuticleDB is a relational database containing all structural proteins of Arthropod cuticle identified to date. Many come from direct sequencing of proteins isolated from cuticle and from sequences from cDNAs that share common features with these authentic cuticular proteins. It also includes proteins from the Drosophila melanogaster and the Anopheles gambiae genomes, that have been predicted to be cuticular proteins, based on a Pfam motif (PF00379 responsible for chitin binding in Arthropod cuticle. The total number of the database entries is 445: 370 derive from insects, 60 from Crustacea and 15 from Chelicerata. The database can be accessed from our web server at http://bioinformatics.biol.uoa.gr/cuticleDB. Conclusions CuticleDB was primarily designed to contain correct and full annotation of cuticular protein data. The database will be of help to future genome annotators. Users will be able to test hypotheses for the existence of known and also of yet unknown motifs in cuticular proteins. An analysis of motifs may contribute to understanding how proteins contribute to the physical properties of cuticle as well as to the precise nature of their interaction with chitin.

Relating environmental availability to bioavailability: soil-type-dependent metal accumulation in the oligochaete Eisenia andrei.

Science.gov (United States)

Peijnenburg, W J; Baerselman, R; de Groot, A C; Jager, T; Posthuma, L; Van Veen, R P

1999-11-01

Body residues are often better estimates of the amount of a chemical at the sites of toxic action in an organism than ambient soil concentrations, because bioavailability differences among soils are explicitly taken into account in considerations of body residues. Often, however, insufficient attention is paid to the rate and extent at which tissue concentrations respond to soil concentrations and soil characteristics. In this contribution the impact of soil characteristics on the environmental bioavailability of heavy metals for the oligochaete worm Eisenia andrei is reported. Uptake of As, Cd, Cr, Cu, Ni, Pb, and Zn in 20 Dutch field soils and in OECD artificial soil was quantified as a function of time. Internal metal concentrations varied less than the corresponding external levels. Metal uptake and elimination were both metal- and species-dependent. Worms typically attained steady-state concentrations rapidly for Cr, Cu, Ni, and Zn. Internal concentrations similar to those in the cultivation medium, linearly increasing body concentrations, or steady-state internal concentrations well above those in the cultivation medium were found for As, Cd, and Pb. Multivariate expressions were derived to describe uptake rate constants, steady-state concentrations, and bioaccumulation factors as a function of soil characteristics. Soil acidity is the most important solid-phase characteristic modulating the availability of As, Cd, and Pb. Although additional semimechanistic calculations yielded evidence of pore-water-related uptake of Cd and Pb modulated by competition between H(+) and metal ions at the active sites of the membranes, the findings for Cr, Cu, Ni, and Zn point to additional influences, among which is probably regulation. Copyright 1999 Academic Press.

Relation between tobacco trace metals and soil type in Lebanon

International Nuclear Information System (INIS)

SLIM, K.; Saad, Z.; Kazpard, V.; El Samarani, A; Nabhan, Ph.

2006-01-01

The aim of study was to determine the concentration of nutrients in soil and tobacco samples from different agricultural regions. We studied the influence of soil type on tobacco quality and the transfer and accumulation of trace metals in tobacco leaves. The results showed that human activities in the Nabatiyeh region had a none pronounced effect on one agricultural plot than on its neighbor. The transfer factor of elements between soil and tobacco plants showed that major constituents are leached and absorbed from the soil, whereas some trace elements are finely absorbed from the alkaline soil. Statistical analysis of the micro nutrients in soil and plants confirmed the existence of two principal factors that control the distribution of elements in different compartments. Four tobacco plots in different regions were also studied as a functions of their pedologic and geologic characteristics. The major elements varied in all regions, but were always ordered Ca > Mg > Na > K. The highest transfer factor for nutrients was found in young soil layers. In the Akkar region, clay nutrients form complexes with micronutrients. Thereby reducing their absorption by tobacco plants. (author)

Yeast hnRNP-related proteins contribute to the maintenance of telomeres

Energy Technology Data Exchange (ETDEWEB)

Lee-Soety, Julia Y., E-mail: jlee04@sju.edu [Department of Biology, Saint Joseph' s University, PA 19131 (United States); Jones, Jennifer; MacGibeny, Margaret A.; Remaly, Erin C.; Daniels, Lynsey; Ito, Andrea; Jean, Jessica; Radecki, Hannah; Spencer, Shannon [Department of Biology, Saint Joseph' s University, PA 19131 (United States)

2012-09-14

Highlights: Black-Right-Pointing-Pointer Yeast hnRNP-related proteins are able to prevent faster senescence in telomerase-null cells. Black-Right-Pointing-Pointer The conserved RRMs in Npl3 are important for telomere maintenance. Black-Right-Pointing-Pointer Human hnRNP A1 is unable to complement the lack of NPL3 in yeast. Black-Right-Pointing-Pointer Npl3 and Cbc2 may work as telomere capping proteins. -- Abstract: Telomeres protect the ends of linear chromosomes, which if eroded to a critical length can become uncapped and lead to replicative senescence. Telomerase maintains telomere length in some cells, but inappropriate expression facilitates the immortality of cancer cells. Recently, proteins involved in RNA processing and ribosome assembly, such as hnRNP (heterogeneous nuclear ribonucleoprotein) A1, have been found to participate in telomere maintenance in mammals. The Saccharomyces cerevisiae protein Npl3 shares significant amino acid sequence similarities with hnRNP A1. We found that deleting NPL3 accelerated the senescence of telomerase null cells. The highly conserved RNA recognition motifs (RRM) in Npl3 appear to be important for preventing faster senescence. Npl3 preferentially binds telomere sequences in vitro, suggesting that Npl3 may affect telomeres directly. Despite similarities between the two proteins, human hnRNP A1 is unable to complement the lack of Npl3 to rescue accelerated senescence in tlc1 npl3 cells. Deletion of CBC2, which encodes another hnRNP-related protein that associates with Npl3, also accelerates senescence. Potential mechanisms by which hnRNP-related proteins maintain telomeres are discussed.

Relation between soil temperature and biophysical parameters in Indian mustard seeds

Science.gov (United States)

Adak, T.; Chakravarty, N. V. K.

2013-12-01

Temporal changes in surface soil temperature were studied in winter crop. Significant changes in bare and cropped soil temperature were revealed. Air temperature showed a statistically positive and strong relationship (R2 = 0.79** to 0.92**) with the soil temperature both at morning and afternoon hours. Linear regression analysis indicated that each unit increase in ambient temperature would lead to increase in minimum and maximum soil temperatures by 1.04 and 1.02 degree, respectively. Statistically positive correlation was revealed among biophysical variables with the cumulative surface soil temperature. Linear and non-linear regression analysis indicated 62-69, 72-86 and 72-80% variation in Leaf area index, dry matter production and heat use efficiency in Indian mustard crop as a function of soil degree days. Below 60% variation in yield in Indian mustard was revealed as a function of soil temperature. In contrast, non-significant relationship between oil content and soil temperature was found, which suggests that oil accumulation in oilseed crops was not affected significantly by the soil temperature as an independent variable.

Migratory bird habitat in relation to tile drainage and poorly drained hydrologic soil groups

Science.gov (United States)

Kastner, Brandi; Christensen, Victoria G.; Williamson, Tanja N.; Sanocki, Chris A.

2016-01-01

The Prairie Pothole Region (PPR) is home to more than 50% of the migratory waterfowl in North America. Although the PPR provides an abundance of temporary and permanent wetlands for nesting and feeding, increases in commodity prices and agricultural drainage practices have led to a trend of wetland drainage. The Northern Shoveler is a migratory dabbling duck species that uses wetland habitats and cultivated croplands in the PPR. Richland County in North Dakota and Roberts County in South Dakota have an abundance of wetlands and croplands and were chosen as the study areas for this research to assess the wetland size and cultivated cropland in relation to hydrologic soil groups for the Northern Shoveler habitat. This study used geographic information system data to analyze Northern Shoveler habitats in association with Natural Resource Conservation Service soil data. Habitats, which are spatially associated with certain hydrologic soil groups, may be at risk of artificial drainage installations because of their proximity to cultivated croplands and soil lacking in natural drainage that may become wet or inundated. Findings indicate that most wetlands that are part of Northern Shoveler habitats were within or adjacent to cultivated croplands. The results also revealed soil hydrologic groups with high runoff potential and low water transmission rates account for most of the soil within the Northern Shoveler‘s wetland and cropland habitats. Habitats near agriculture with high runoff potential are likely to be drained and this has the potential of reducing Northern Shoveler habitat.

Soil infiltration based on bp neural network and grey relational analysis

OpenAIRE

Juan,Wang; Pute,Wu; Xining,Zhao

2013-01-01

Soil infiltration is a key link of the natural water cycle process. Studies on soil permeability are conducive for water resources assessment and estimation, runoff regulation and management, soil erosion modeling, nonpoint and point source pollution of farmland, among other aspects. The unequal influence of rainfall duration, rainfall intensity, antecedent soil moisture, vegetation cover, vegetation type, and slope gradient on soil cumulative infiltration was studied under simulated rainfall...

Impact of soil properties on critical concentrations of cadmium, lead, copper, zinc, and mercury in soil and soil solution in view of ecotoxicological effects.

Science.gov (United States)

de Vries, Wim; Lofts, Steve; Tipping, Ed; Meili, Markus; Groenenberg, Jan E; Schütze, Gudrun

2007-01-01

Risk assessment for metals in terrestrial ecosystems, including assessments of critical loads, requires appropriate critical limits for metal concentrations in soil and soil solution. This chapter presents an overview of methodologies used to derive critical (i) reactive and total metal concentrations in soils and (ii) free metal ion and total metal concentrations in soil solution for Cd, Pb, Cu, Zn, and Hg, taking into account the effect of soil properties related to ecotoxicological effects. Most emphasis is given to the derivation of critical free and total metal concentrations in soil solution, using available NOEC soil data and transfer functions relating solid-phase and dissolved metal concentrations. This approach is based on the assumption that impacts on test organisms (plants, microorganisms, and soil invertebrates) are mainly related to the soil solution concentration (activity) and not to the soil solid-phase content. Critical Cd, Pb, Cu, Zn, and Hg concentrations in soil solution vary with pH and DOC level. The results obtained are generally comparable to those derived for surface waters based on impacts to aquatic organisms. Critical soil metal concentrations, related to the derived soil solution limits, can be described as a function of pH and organic matter and clay content, and varying about one order of magnitude between different soil types.

Soil and Pesticides

Science.gov (United States)

; Environment Human Health Animal Health Safe Use Practices Food Safety Environment Air Water Soil Wildlife Home Page Pesticides and the Environment Soil and Pesticides Related Topics: What Happens to Pesticides español Soil and Pesticides Soil can be degraded and the community of organisms living in the soil can

Plant species distribution in relation to water-table depth and soil redox potential in montane riparian meadows

Science.gov (United States)

Kathleen A. Dwire; J. Boone Kauffman; John E. Baham

2006-01-01

The distribution of riparian plant species is largely driven by hydrologic and soil variables, and riparian plant communities frequently occur in relatively distinct zones along streamside elevational and soil textural gradients. In two montane meadows in northeast Oregon, USA, we examined plant species distribution in three riparian plant communities¡ªdefined as wet,...

Relation of forms of compounds of heavy natural radionuclides in soils

International Nuclear Information System (INIS)

Arkhipov, N.P.; Fedorova, T.A.; Fevraleva, L.T.

1986-01-01

Results of studying forms of 238 U, 232 Th, 226 Ra, 210 Po, 210 Pb compounds in nonfertilized soils (under control) and in soils fertilized with ammophos containing increased amount of the mentioned radionuclides are given. The study was performed in main-year field experiment with sandy ashen gray soil and leached chernozemic soil. It is shown that a main share of radionuclides in nonfertilized soils is presened with tightly bound compounds and compounds bound with sesquioxide compounds. After 5 years labelled natural radionuclides introduced into the ammophos composition are in a more mobile state as compared with radionuclides in nonfertilized soil and they are presented with acid-soluble and bound with humus compound forms. Systematical application of fertilizers during along-term period results in the concentration increase of heavy natural radionuclides in soil

Relationships between soil erosion risk, soil use and soil properties in Mediterranean areas. A comparative study of three typical sceneries

Science.gov (United States)

Gil, Juan; Priego-Navas, Mercedes; Zavala, Lorena M.; Jordán, Antonio

2013-04-01

Generally, literature shows that the high variability of rainfall-induced soil erosion is related to climatic differences, relief, soil properties and land use. Very different runoff rates and soil loss values have been reported in Mediterranean cropped soils depending on soil management practices, but also in soils under natural vegetation types. OBJECTIVES The aim of this research is to study the relationships between soil erosion risk, soil use and soil properties in three typical Mediterranean areas from southern Spain: olive groves under conventional tillage, minimum tillage and no-till practices, and soils under natural vegetation. METHODS Rainfall simulation experiments have been carried out in order to assess the relationship between soil erosion risk, land use, soil management and soil properties in olive-cropped soils under different types of management and soils under natural vegetation type from Mediterranean areas in southern Spain RESULTS Results show that mean runoff rates decrease from 35% in olive grove soils under conventional tillage to 25% in olive (Olea europaea) grove soils with minimum tillage or no-till practices, and slightly over 22% in soils under natural vegetation. Moreover, considering the different vegetation types, runoff rates vary in a wide range, although runoff rates from soils under holm oak (Quercus rotundifolia), 25.70%, and marginal olive groves , 25.31%, are not significantly different. Results from soils under natural vegetation show that the properties and nature of the organic residues play a role in runoff characteristics, as runoff rates above 50% were observed in less than 10% of the rainfall simulations performed on soils with a organic layer. In contrast, more than half of runoff rates from bare soils reached or surpassed 50%. Quantitatively, average values for runoff water losses increase up to 2.5 times in unprotected soils. This is a key issue in the study area, where mean annual rainfall is above 600 mm

Rates of Litter Decomposition and Soil Respiration in Relation to Soil Temperature and Water in Different-Aged Pinus massoniana Forests in the Three Gorges Reservoir Area, China

Science.gov (United States)

Zeng, Lixiong; Huang, Zhilin; Lei, Jingpin; Zhou, Benzhi; Li, Maihe

2014-01-01

To better understand the soil carbon dynamics and cycling in terrestrial ecosystems in response to environmental changes, we studied soil respiration, litter decomposition, and their relations to soil temperature and soil water content for 18-months (Aug. 2010–Jan. 2012) in three different-aged Pinus massoniana forests in the Three Gorges Reservoir Area, China. Across the experimental period, the mean total soil respiration and litter respiration were 1.94 and 0.81, 2.00 and 0.60, 2.19 and 0.71 µmol CO2 m−2 s−1, and the litter dry mass remaining was 57.6%, 56.2% and 61.3% in the 20-, 30-, and 46-year-old forests, respectively. We found that the temporal variations of soil respiration and litter decomposition rates can be well explained by soil temperature at 5 cm depth. Both the total soil respiration and litter respiration were significantly positively correlated with the litter decomposition rates. The mean contribution of the litter respiration to the total soil respiration was 31.0%–45.9% for the three different-aged forests. The present study found that the total soil respiration was not significantly affected by forest age when P. masonniana stands exceed a certain age (e.g. >20 years old), but it increased significantly with increased soil temperature. Hence, forest management strategies need to protect the understory vegetation to limit soil warming, in order to reduce the CO2 emission under the currently rapid global warming. The contribution of litter decomposition to the total soil respiration varies across spatial and temporal scales. This indicates the need for separate consideration of soil and litter respiration when assessing the climate impacts on forest carbon cycling. PMID:25004164

[Immunochemical Detection of Azospirilla in Soil with Genus-Specific Antibodies].

Science.gov (United States)

Shirokov, A A; Krasov, A I; Selivanov, N Yu; Burygin, G L; Shchegolev, S Yu; Matora, L Yu

2015-01-01

Immunoelectrophoresis and immunodiffusion analysis with antibodies to whole intact cells of the type strain of nitrogen-fixing soil bacteria Azospirillum brasilense Sp7 revealed at least three conservative surface immunogenic proteins of azospirilla. Cross-reactions with these proteins made it possible to use the above antibodies for detection of azospirilla as a genus-specific probe conjugated with horseradish peroxidase as an enzymatic label. Direct immune-enzyme analysis of soil suspensions (typical chernozem, Saratov oblast) confirmed applicability of the conjugates based on genus-specific antibodies to the surface proteins of azospirilla for direct detection of this bacterial genus in environmental samples. These results provide a basis for broad application of this method for analysis of Azospirillum occurrence in soil.

Human-Chromatin-Related Protein Interactions Identify a Demethylase Complex Required for Chromosome Segregation

Directory of Open Access Journals (Sweden)

Edyta Marcon

2014-07-01

Full Text Available Chromatin regulation is driven by multicomponent protein complexes, which form functional modules. Deciphering the components of these modules and their interactions is central to understanding the molecular pathways these proteins are regulating, their functions, and their relation to both normal development and disease. We describe the use of affinity purifications of tagged human proteins coupled with mass spectrometry to generate a protein-protein interaction map encompassing known and predicted chromatin-related proteins. On the basis of 1,394 successful purifications of 293 proteins, we report a high-confidence (85% precision network involving 11,464 protein-protein interactions among 1,738 different human proteins, grouped into 164 often overlapping protein complexes with a particular focus on the family of JmjC-containing lysine demethylases, their partners, and their roles in chromatin remodeling. We show that RCCD1 is a partner of histone H3K36 demethylase KDM8 and demonstrate that both are important for cell-cycle-regulated transcriptional repression in centromeric regions and accurate mitotic division.

SH2/SH3 adaptor proteins can link tyrosine kinases to a Ste20-related protein kinase, HPK1.

Science.gov (United States)

Anafi, M; Kiefer, F; Gish, G D; Mbamalu, G; Iscove, N N; Pawson, T

1997-10-31

Ste20-related protein kinases have been implicated as regulating a range of cellular responses, including stress-activated protein kinase pathways and the control of cytoskeletal architecture. An important issue involves the identities of the upstream signals and regulators that might control the biological functions of mammalian Ste20-related protein kinases. HPK1 is a protein-serine/threonine kinase that possesses a Ste20-like kinase domain, and in transfected cells activates a protein kinase pathway leading to the stress-activated protein kinase SAPK/JNK. Here we have investigated candidate upstream regulators that might interact with HPK1. HPK1 possesses an N-terminal catalytic domain and an extended C-terminal tail with four proline-rich motifs. The SH3 domains of Grb2 bound in vitro to specific proline-rich motifs in the HPK1 tail and functioned synergistically to direct the stable binding of Grb2 to HPK1 in transfected Cos1 cells. Epidermal growth factor (EGF) stimulation did not affect the binding of Grb2 to HPK1 but induced recruitment of the Grb2.HPK1 complex to the autophosphorylated EGF receptor and to the Shc docking protein. Several activated receptor and cytoplasmic tyrosine kinases, including the EGF receptor, stimulated the tyrosine phosphorylation of the HPK1 serine/threonine kinase. These results suggest that HPK1, a mammalian Ste20-related protein-serine/threonine kinase, can potentially associate with protein-tyrosine kinases through interactions mediated by SH2/SH3 adaptors such as Grb2. Such interaction may provide a possible mechanism for cross-talk between distinct biochemical pathways following the activation of tyrosine kinases.

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

Science.gov (United States)

Fierer, Noah; Leff, Jonathan W; Adams, Byron J; Nielsen, Uffe N; Bates, Scott Thomas; Lauber, Christian L; Owens, Sarah; Gilbert, Jack A; Wall, Diana H; Caporaso, J Gregory

2012-12-26

For centuries ecologists have studied how the diversity and functional traits of plant and animal communities vary across biomes. In contrast, we have only just begun exploring similar questions for soil microbial communities despite soil microbes being the dominant engines of biogeochemical cycles and a major pool of living biomass in terrestrial ecosystems. We used metagenomic sequencing to compare the composition and functional attributes of 16 soil microbial communities collected from cold deserts, hot deserts, forests, grasslands, and tundra. Those communities found in plant-free cold desert soils typically had the lowest levels of functional diversity (diversity of protein-coding gene categories) and the lowest levels of phylogenetic and taxonomic diversity. Across all soils, functional beta diversity was strongly correlated with taxonomic and phylogenetic beta diversity; the desert microbial communities were clearly distinct from the nondesert communities regardless of the metric used. The desert communities had higher relative abundances of genes associated with osmoregulation and dormancy, but lower relative abundances of genes associated with nutrient cycling and the catabolism of plant-derived organic compounds. Antibiotic resistance genes were consistently threefold less abundant in the desert soils than in the nondesert soils, suggesting that abiotic conditions, not competitive interactions, are more important in shaping the desert microbial communities. As the most comprehensive survey of soil taxonomic, phylogenetic, and functional diversity to date, this study demonstrates that metagenomic approaches can be used to build a predictive understanding of how microbial diversity and function vary across terrestrial biomes.

Integration of relational and hierarchical network information for protein function prediction

Directory of Open Access Journals (Sweden)

Jiang Xiaoyu

2008-08-01

Full Text Available Abstract Background In the current climate of high-throughput computational biology, the inference of a protein's function from related measurements, such as protein-protein interaction relations, has become a canonical task. Most existing technologies pursue this task as a classification problem, on a term-by-term basis, for each term in a database, such as the Gene Ontology (GO database, a popular rigorous vocabulary for biological functions. However, ontology structures are essentially hierarchies, with certain top to bottom annotation rules which protein function predictions should in principle follow. Currently, the most common approach to imposing these hierarchical constraints on network-based classifiers is through the use of transitive closure to predictions. Results We propose a probabilistic framework to integrate information in relational data, in the form of a protein-protein interaction network, and a hierarchically structured database of terms, in the form of the GO database, for the purpose of protein function prediction. At the heart of our framework is a factorization of local neighborhood information in the protein-protein interaction network across successive ancestral terms in the GO hierarchy. We introduce a classifier within this framework, with computationally efficient implementation, that produces GO-term predictions that naturally obey a hierarchical 'true-path' consistency from root to leaves, without the need for further post-processing. Conclusion A cross-validation study, using data from the yeast Saccharomyces cerevisiae, shows our method offers substantial improvements over both standard 'guilt-by-association' (i.e., Nearest-Neighbor and more refined Markov random field methods, whether in their original form or when post-processed to artificially impose 'true-path' consistency. Further analysis of the results indicates that these improvements are associated with increased predictive capabilities (i.e., increased

Soil

International Nuclear Information System (INIS)

Freudenschuss, A.; Huber, S.; Riss, A.; Schwarz, S.; Tulipan, M.

2002-01-01

Environmental soil surveys in each province of Austria have been performed, soils of about 5,000 sites were described and analyzed for nutrients and pollutants, the majority of these data are recorded in the soil information system of Austria (BORIS) soil database, http://www.ubavie.gv.at/umweltsituation/boden/boris), which also contains a soil map of Austria, data from 30 specific investigations mainly in areas with industry and results from the Austria - wide cesium investigation. With respect to the environmental state of soils a short discussion is given, including two geographical charts, one showing which sites have soil data (2001) and the other the cadmium distribution in top soils according land use (forest, grassland, arable land, others). Information related to the soil erosion, Corine land cover (Europe-wide land cover database), evaluation of pollutants in soils (reference values of As, Cd, Co, Cr, Cu, Hg, Mo, Ni, Se, Pb, Tl, Va, Zn, AOX, PAH, PCB, PCDD/pcdf, dioxin), and relevant Austrian and European standards and regulations is provided. Figs. 2, Tables 4. (nevyjel)

Soil Scientific Research Methods Used in Archaeology – Promising Soil Biochemistry: a Mini-review

Directory of Open Access Journals (Sweden)

Valerie Vranová

2015-01-01

Full Text Available This work seeks to review soil scientific methods that have been used and are still being used in archaeology. This review paper aims at emphasising the importance of soil science practice to archaeology thus adding a scientific analytical nature to the cultural nature of archaeology. Common methods (physical, chemical and biochemical used to analyse archaeological soils and artefacts is touched on and their strengths and shortcomings duly noted to become the base for future research. Furthermore, the authors made emphasis on distinctive excavating/sampling methods, biochemical analyses focused on distinctive features of plough-land and soil organic matter mineralization, Counter Immunoelectrophoresis (CEIP method by the presence of proteins testing, carbon analyses such as carbon-14 dating techniques, soil phosphorus studies and geochemical analyses of hematite Fe2O3 and cinnabaryte HgS contents. It is obvious that, the future of archaeology is in the soil because the soil harbours information of the past hence the synergy between soil and archaeological research has to be strengthened and archaeology made a prime agenda by soil scientists by expanding the analyses scope of total phosphorus extraction and giving attention to soil magnetism.

Seasonal variation in the temperature sensitivity of proteolytic enzyme activity in temperate forest soils

Science.gov (United States)

Brzostek, Edward R.; Finzi, Adrien C.

2012-03-01

Increasing soil temperature has the potential to alter the activity of the extracellular enzymes that mobilize nitrogen (N) from soil organic matter (SOM) and ultimately the availability of N for primary production. Proteolytic enzymes depolymerize N from proteinaceous components of SOM into amino acids, and their activity is a principal driver of the within-system cycle of soil N. The objectives of this study were to investigate whether the soils of temperate forest tree species differ in the temperature sensitivity of proteolytic enzyme activity over the growing season and the role of substrate limitation in regulating temperature sensitivity. Across species and sampling dates, proteolytic enzyme activity had relatively low sensitivity to temperature with a mean activation energy (Ea) of 33.5 kJ mol-1. Ea declined in white ash, American beech, and eastern hemlock soils across the growing season as soils warmed. By contrast, Eain sugar maple soil increased across the growing season. We used these data to develop a species-specific empirical model of proteolytic enzyme activity for the 2009 calendar year and studied the interactive effects of soil temperature (ambient or +5°C) and substrate limitation (ambient or elevated protein) on enzyme activity. Declines in substrate limitation had a larger single-factor effect on proteolytic enzyme activity than temperature, particularly in the spring. There was, however, a large synergistic effect of increasing temperature and substrate supply on proteolytic enzyme activity. Our results suggest limited increases in N availability with climate warming unless there is a parallel increase in the availability of protein substrates.

Soil gas geochemistry in relation to eruptive fissures on Timanfaya volcano, Lanzarote Island (Canary Islands, Spain)

Science.gov (United States)

Padrón, Eleazar; Padilla, Germán; Hernández, Pedro A.; Pérez, Nemesio M.; Calvo, David; Nolasco, Dácil; Barrancos, José; Melián, Gladys V.; Dionis, Samara; Rodríguez, Fátima

2013-01-01

We report herein the first results of an extensive soil gas survey performed on Timanfaya volcano on May 2011. Soil gas composition at Timanfaya volcano indicates a main atmospheric source, slightly enriched in CO2 and He. Soil CO2 concentration showed a very slight deep contribution of the Timanfaya volcanic system, with no clear relation to the main eruptive fissures of the studied area. The existence of soil helium enrichments in Timanfaya indicates a shallow degassing of crustal helium and other possible deeper sources probably form cooling magma bodies at depth. The main soil helium enrichments were observed in good agreement with the main eruptive fissures of the 1730-36 eruption, with the highest values located at those areas with a higher density of recent eruptive centers, indicating an important structural control for the leakage of helium at Timanfaya volcano. Atmospheric air slightly polluted by deep-seated helium emissions, CO2 degassed from a cooling magma body, and biogenic CO2, might be the most plausible explanation for the existence of soil gas. Helium is a deep-seated gas, exhibiting important emission rates along the main eruptive fissure of the 1730-36 eruption of Timanfaya volcano.

Identification of De Novo Synthesized and Relatively Older Proteins

OpenAIRE

Jaleel, Abdul; Henderson, Gregory C.; Madden, Benjamin J.; Klaus, Katherine A.; Morse, Dawn M.; Gopala, Srinivas; Nair, K. Sreekumaran

2010-01-01

OBJECTIVE The accumulation of old and damaged proteins likely contributes to complications of diabetes, but currently no methodology is available to measure the relative age of a specific protein alongside assessment of posttranslational modifications (PTM). To accomplish our goal of studying the impact of insulin deficiency and hyperglycemia in type 1 diabetes upon accumulation of old damaged isoforms of plasma apolipoprotein A-1 (ApoA-1), we sought to develop a novel methodology, which is r...

Net sulfur mineralization potential in Swedish arable soils in relation to long-term treatment history and soil properties

DEFF Research Database (Denmark)

Boye, Kristin; Nilsson, S Ingvar; Eriksen, Jørgen

2009-01-01

accumulated net S mineralization (SAccMin) and a number of soil physical and chemical properties were determined. Treatments and soil differences in SAccMin, as well as correlations with soil variables, were tested with single and multivariate analyses. Long-term FYM application resulted in a significantly (p......The long-term treatment effect (since 1957-1966) of farmyard manure (FYM) application compared with crop residue incorporation was investigated in five soils (sandy loam to silty clay) with regards to the net sulfur (S) mineralization potential. An open incubation technique was used to determine...... = 0.012) higher net S mineralization potential, although total amounts of C, N, and S were not significantly (p soils within this treatment. The measured soil variables were not significantly correlated...

[Relation between species distribution of plant community and soil factors under grazing in alpine meadow].

Science.gov (United States)

Niu, Yu Jie; Yang, Si Wei; Wang, Gui Zhen; Liu, Li; Du, Guo Zhen; Hua, Li Min

2017-12-01

The research selected the alpine meadow located in the northeastern margin of the Qinghai-Tibet Plateau to study the changes of vegetation community and soil properties under different grazing intensities, as well as the quantitative relation between the distribution patterns of plant species and the physical and chemical properties of soil. The results showed that the grazing caused the differentiation of the initial vegetation community with the dominant plants, Elymus nutans and Stipa grandis. In the plots with high and low grazing intensities, the dominant plants had changed to Kobresia humilis and Melissitus ruthenica, and E. nutans and Poa crymophila, respectively. With the increase of grazing intensity, the plant richness, importance value and biomass were significantly decreased. The sequence of plant species importance value in each plot against grazing intensity could be fitted by a logarithmic model. The number of required plant species was reduced while the importance value of the remaining plant species accounted for 50% of the importance value in the whole vegetation community. The available P, available K, soil compaction, soil water content, stable infiltration rate and large aggregate index were significantly changed with grazing intensity, however, the changes were different. The CCA ordination showed that the soil compaction was the key factor affecting the distribution pattern of the plant species under grazing. The variance decomposition indicated that the soil factors together explained 30.5% of the distribution of the plant species, in particular the soil physical properties alone explained 22.8% of the distribution of the plant species, which had the highest rate of contribution to the plant species distribution. The soil physical properties affected the distribution pattern of plant species on grazed alpine meadow.

RELATION OF Xylopia emarginata MART. POPULATION GENETIC ESTIMATIOS WITH SOIL CHEMISTRY CHARACTERISTICS

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Peterson Jaeger

2007-06-01

Full Text Available It is known that there is a relation between the biotic and abiotic environment and that this interaction reflects in the live organisms group of a place. The interactions between genotype and environment, also already recognized, act in a anolog way, but in a difficult mensurable constatation. In this way, the current research objectifies relating soil Chemistry characteristics with the heterozygosis levels of three Xylopia emarginata Mart. subpopulations. The generic analysis results demonstrated that the subpopulation 1 differs from other ones, showing significative Wright fixation index (-0.389, while non-significative values have been found in the subpopulations 2 and 3 (-0.105 and -0.209, respectely. This difference has also been observed by the Principal Component Analysis (PCA, where the subpopulation 1 has been influencianted by the tenors of organic material (MO, alumin (Al, effective cationic change capacity (t, pH 7.0 (T and sum of hydrogen and alumin (H+Al, while the subpopulations 2 and 3 have been influenciated by pH, phosphor (P and basis saturation index (V. In the same way, the allele 2 of EST-1 and MDH-2 are inversely related to pH, P and V end the allele 1 of GDH-3, SDH-3 and GTDH-3 directly related with MO, AL, t, T and H+Al. In studied populations of Xylopia emarginata Mart. the soil chemistry characteristics affected heterozygosis levels.

Zinc availability in relation to selected soil properties in a crude oil polluted eutric tropofluvent

International Nuclear Information System (INIS)

Chukwuma, M.C.; Eshett, E.T.; Onweremadu, E.U.; Okon, M.A.

2010-01-01

This study examined zinc availability in crude oil-polluted soils. The aim of the study was to determine the effect of zinc on the physiochemical properties of soils in relation to remediation activities. The study was located at a site in Nigeria where crude oil spillage had occurred over a period of 2 months. The region was characterized by quarternary, alluvium, meander belt, wooded back swamps as well as fresh water swamps and Sombreiro-Warri Deltaic plains with large deposits of petroleum and natural gas. Three different land units were studied, notably (1) unpolluted, (2) polluted without vegetation and (3) polluted with vegetation. Soil sampling was conducted using a transect method. Hydrometer analyses were conducted to determine particle size distribution, while a core method was used to determine bulk density. Soil pH, total carbon, phosphorus, and total nitrogen were also measured. An analysis of variance (ANOVA) was used to correlate and regress zinc availability against the selected soil properties. The study showed that zinc availability increased with increases in the value of the effective carbon cation exchange capacity in the unpolluted and polluted samples without vegetation. Zinc decreased with increased clay and organic matter content. Results suggested that soils must be reclaimed quickly in order to prevent additional degradation. 48 refs., 5 tabs., 4 figs.

Zinc availability in relation to selected soil properties in a crude oil polluted eutric tropofluvent

Energy Technology Data Exchange (ETDEWEB)

Chukwuma, M.C.; Eshett, E.T.; Onweremadu, E.U.; Okon, M.A. [Federal Univ. of Technology, Owerri (Nigeria). Dept. of Soil Science and Technology

2010-04-01

This study examined zinc availability in crude oil-polluted soils. The aim of the study was to determine the effect of zinc on the physiochemical properties of soils in relation to remediation activities. The study was located at a site in Nigeria where crude oil spillage had occurred over a period of 2 months. The region was characterized by quarternary, alluvium, meander belt, wooded back swamps as well as fresh water swamps and Sombreiro-Warri Deltaic plains with large deposits of petroleum and natural gas. Three different land units were studied, notably (1) unpolluted, (2) polluted without vegetation and (3) polluted with vegetation. Soil sampling was conducted using a transect method. Hydrometer analyses were conducted to determine particle size distribution, while a core method was used to determine bulk density. Soil pH, total carbon, phosphorus, and total nitrogen were also measured. An analysis of variance (ANOVA) was used to correlate and regress zinc availability against the selected soil properties. The study showed that zinc availability increased with increases in the value of the effective carbon cation exchange capacity in the unpolluted and polluted samples without vegetation. Zinc decreased with increased clay and organic matter content. Results suggested that soils must be reclaimed quickly in order to prevent additional degradation. 48 refs., 5 tabs., 4 figs.

The Diversity of Yellow-Related Proteins in Sand Flies (Diptera: Psychodidae.

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Michal Sima

Full Text Available Yellow-related proteins (YRPs present in sand fly saliva act as affinity binders of bioamines, and help the fly to complete a bloodmeal by scavenging the physiological signals of damaged cells. They are also the main antigens in sand fly saliva and their recombinant form is used as a marker of host exposure to sand flies. Moreover, several salivary proteins and plasmids coding these proteins induce strong immune response in hosts bitten by sand flies and are being used to design protecting vaccines against Leishmania parasites. In this study, thirty two 3D models of different yellow-related proteins from thirteen sand fly species of two genera were constructed based on the known protein structure from Lutzomyia longipalpis. We also studied evolutionary relationships among species based on protein sequences as well as sequence and structural variability of their ligand-binding site. All of these 33 sand fly YRPs shared a similar structure, including a unique tunnel that connects the ligand-binding site with the solvent by two independent paths. However, intraspecific modifications found among these proteins affects the charges of the entrances to the tunnel, the length of the tunnel and its hydrophobicity. We suggest that these structural and sequential differences influence the ligand-binding abilities of these proteins and provide sand flies with a greater number of YRP paralogs with more nuanced answers to bioamines. All these characteristics allow us to better evaluate these proteins with respect to their potential use as part of anti-Leishmania vaccines or as an antigen to measure host exposure to sand flies.

Effects of Soil Salinity on the Expression of Bt Toxin (Cry1Ac and the Control Efficiency of Helicoverpa armigera in Field-Grown Transgenic Bt Cotton.

Directory of Open Access Journals (Sweden)

Jun-Yu Luo

Full Text Available An increasing area of transgenic Bacillus thuringiensis (Bt cotton is being planted in saline-alkaline soil in China. The Bt protein level in transgenic cotton plants and its control efficiency can be affected by abiotic stress, including high temperature, water deficiency and other factors. However, how soil salinity affects the expression of Bt protein, thus influencing the control efficiency of Bt cotton against the cotton bollworm (CBW Helicoverpa armigera (Hübner in the field, is poorly understood. Our objective in the present study was to investigate the effects of soil salinity on the expression of Bt toxin (Cry1Ac and the control efficiency of Helicoverpa armigera in field-grown transgenic Bt cotton using three natural saline levels (1.15 dS m-1 [low soil-salinity], 6.00 dS m-1 [medium soil-salinity] and 11.46 dS m-1 [high soil-salinity]. We found that the Bt protein content in the transgenic Bt cotton leaves and the insecticidal activity of Bt cotton against CBW decreased with the increasing soil salinity in laboratory experiments during the growing season. The Bt protein content of Bt cotton leaves in the laboratory were negatively correlated with the salinity level. The CBW populations were highest on the Bt cotton grown in medium-salinity soil instead of the high-salinity soil in field conditions. A possible mechanism may be that the relatively high-salinity soil changed the plant nutritional quality or other plant defensive traits. The results from this study may help to identify more appropriate practices to control CBW in Bt cotton fields with different soil salinity levels.

Soil degradation effect on biological activity in Mediterranean calcareous soils

Science.gov (United States)

Roca-Pérez, L.; Alcover-Sáez, S.; Mormeneo, S.; Boluda, R.

2009-04-01

Soil degradation processes include erosion, organic matter decline, compaction, salinization, landslides, contamination, sealing and biodiversity decline. In the Mediterranean region the climatological and lithological conditions, together with relief on the landscape and anthropological activity are responsible for increasing desertification process. It is therefore considered to be extreme importance to be able to measure soil degradation quantitatively. We studied soil characteristics, microbiological and biochemical parameters in different calcareous soil sequences from Valencia Community (Easter Spain), in an attempt to assess the suitability of the parameters measured to reflect the state of soil degradation and the possibility of using the parameters to assess microbiological decline and soil quality. For this purpose, forest, scrubland and agricultural soil in three soil sequences were sampled in different areas. Several sensors of the soil biochemistry and microbiology related with total organic carbon, microbial biomass carbon, soil respiration, microorganism number and enzyme activities were determined. The results show that, except microorganism number, these parameters are good indicators of a soil biological activity and soil quality. The best enzymatic activities to use like indicators were phosphatases, esterases, amino-peptidases. Thus, the enzymes test can be used as indicators of soil degradation when this degradation is related with organic matter losses. There was a statistically significant difference in cumulative O2 uptake and extracellular enzymes among the soils with different degree of degradation. We would like to thank Spanish government-MICINN for funding and support (MICINN, project CGL2006-09776).

Microwave remote sensing of soil moisture for estimation of profile soil property

International Nuclear Information System (INIS)

Mattikalli, N.M.; Engman, E.T.; Ahuja, L.R.; Jackson, T.J.

1998-01-01

Multi-temporal microwave remotely-sensed soil moisture has been utilized for the estimation of profile soil property, viz. the soil hydraulic conductivity. Passive microwave remote sensing was employed to collect daily soil moisture data across the Little Washita watershed, Oklahoma, during 10-18 June 1992. The ESTAR (Electronically Steered Thin Array Radiometer) instrument operating at L -band was flown on a NASA C-130 aircraft. Brightness temperature (TB) data collected at a ground resolution of 200m were employed to derive spatial distribution of surface soil moisture. Analysis of spatial and temporal soil moisture information in conjunction with soils data revealed a direct relation between changes in soil moisture and soil texture. A geographical information system (GIS) based analysis suggested that 2-days initial drainage of soil, measured from remote sensing, was related to an important soil hydraulic property viz. the saturated hydraulic conductivity (Ksat). A hydrologic modelling methodology was developed for estimation of Ksat of surface and sub-surface soil layers. Specifically, soil hydraulic parameters were optimized to obtain a good match between model estimated and field measured soil moisture profiles. Relations between 2-days soil moisture change and Ksat of 0-5 cm, 0-30 cm and 0-60cm depths yielded correla tions of 0.78, 0.82 and 0.71, respectively. These results are comparable to the findings of previous studies involving laboratory-controlled experiments and numerical simulations, and support their extension to the field conditions of the Little Washita watershed. These findings have potential applications of microwave remote sensing to obtain 2-days of soil moisture and then to quickly estimate the spatial distribution of Ksat over large areas. (author)

MICROORGANISMS: A MARVELOUS SOURCE OF SINGLE CELL PROTEINS

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Agam Nangul

2013-08-01

Full Text Available The increasing global population living below the poverty line is driving the scientific community to search for non-conventional protein sources that can replace conventional expensive ones. Microbial proteins, or single-cell protein (SCP, represent a potential future nutrient source for human food and animal feed. These microbial proteins can be grown rapidly on substrates with minimum dependence on soil, water and climate conditions. They can be produced from algae, fungi and bacteria the chief sources of SCP. It is convenient to use microorganisms for production of SCP as they grow rapidly and have high protein content. Industrially, they can be produced from algal biomass, yeast, fungi. There are several other ways of getting SCP as well. Despite numerous advantages of SCP, they have disadvantages and toxic effects too, especially related to mycotoxins and bacterial toxins.

[Interrelationships between soil fauna and soil environmental factors in China: research advance].

Science.gov (United States)

Wang, Yi; Wei, Wei; Yang, Xing-zhong; Chen, Li-ding; Yang, Lei

2010-09-01

Soil fauna has close relations with various environmental factors in soil ecosystem. To explore the interrelationships between soil fauna and soil environmental factors is of vital importance to deep understand the dynamics of soil ecosystem and to assess the functioning of the ecosystem. The environmental factors affecting soil fauna can be classified as soil properties and soil external environment. The former contains soil basic physical and chemical properties, soil moisture, and soil pollution. The latter includes vegetation, land use type, landform, and climate, etc. From these aspects, this paper summarized the published literatures in China on the interrelationships between soil fauna and soil environmental factors. It was considered that several problems were existed in related studies, e.g., fewer researches were made in integrating soil fauna's bio-indicator function, research methods were needed to be improved, and the studies on the multi-environmental factors and their large scale spatial-temporal variability were in deficiency. Corresponding suggestions were proposed, i.e., more work should be done according to the practical needs, advanced experiences from abroad should be referenced, and comprehensive studies on multi-environmental factors and long-term monitoring should be conducted on large scale areas.

Estimating respiration of roots in soil: interactions with soil CO2, soil temperature and soil water content

NARCIS (Netherlands)

Bouma, T.J.; Nielsen, K.F.; Eissenstat, D.M.; Lynch, J.P.

1997-01-01

Little information is available on the variability of the dynamics of the actual and observed root respiration rate in relation to abiotic factors. In this study, we describe I) interactions between soil CO2 concentration, temperature, soil water content and root respiration, and II) the effect of

Variáveis relacionadas à estabilidade de complexos organo-minerais em solos tropicais e subtropicais brasileiros Selected soil-variables related to the stability of organo-minerals complexes in tropical and subtropical brazilian soils

Directory of Open Access Journals (Sweden)

Alberto Vasconcellos Inda Junior

2007-10-01

Full Text Available A estabilidade de complexos organo-minerais é uma característica importante quanto à química e física de solos tropicais e subtropicais. O objetivo deste estudo foi identificar variáveis relacionadas à estabilidade de complexos organo-minerais, avaliada pela energia de ultra-som necessária para a dispersão total do solo em partículas primárias, em seis solos das regiões Sul e Centro-Oeste do Brasil com textura e mineralogia distintas. A energia de ultra-som necessária para dispersão total dos solos variou de 239 a 2.389J mL-1, sendo diretamente relacionada aos teores de carbono orgânico (R²=0,799, PThe stability of organo-mineral complexes is an important characteristic related to the soil chemistry and physics of tropical and subtropical soils. This study was aimed at identifing the variables related to the stability of organo-mineral complexes, evaluated by ultrasonic energy necessary to complete soil dispersion, of six soils from South and West-Center regions of Brazil with distint texture and mineralogy. The ultrasonic energy to complete soil dispersion varied from 239 a 2389J mL-1, and was positively related to the soil organic carbon concentrations (R²=0.799, P<0.05. The clay mineralogy had an important role to the stability of organo-mineral complexes, which were related to the content of low cristalinity iron oxides (R²=0.586, P<0.10, but did not had relationship with the total pedogenic iron oxides. The qualitative analysis of the clay mineralogy, by X-ray diffraction, evidenced that gibbsite and goethite are the main clay minerals related to the stability of organo-mineral complexes, reinforcing the importance of these minerals on the physical protection and coloidal stability of the soil organic matter in the tropical and subtropical soils.

Soil sterilization affects aging-related sequestration and bioavailability of p,p'-DDE and anthracene to earthworms

Energy Technology Data Exchange (ETDEWEB)

Slizovskiy, Ilya B. [Program in Environmental Science and Department of Chemistry, Muhlenberg College, Allentown, PA 18104 (United States); Kelsey, Jason W., E-mail: Kelsey@muhlenberg.ed [Program in Environmental Science and Department of Chemistry, Muhlenberg College, Allentown, PA 18104 (United States)

2010-10-15

Laboratory experiments investigated the effects of soil sterilization and compound aging on the bioaccumulation of spiked p,p'-DDE and anthracene by Eisenia fetida and Lumbricus terrestris. Declines in bioavailability occurred as pollutant residence time in both sterile and non-sterile soils increased from 3 to 203 d. Accumulation was generally higher in sterile soils during initial periods of aging (from 3-103 d). By 203 d, however, bioavailability of the compounds was unaffected by sterilization. Gamma irradiation and autoclaving may have altered bioavailability by inducing changes in the chemistry of soil organic matter (SOM). The results support a dual-mode partitioning sorption model in which the SOM components associated with short-term sorption (the 'soft' or 'rubbery' phases) are more affected than are the components associated with long-term sorption (the 'glassy' or microcrystalline phases). Risk assessments based on data from experiments in which sterile soil was used could overestimate exposure and bioaccumulation of pollutants. - Soil sterilization affects aging-related sequestration of organic contaminants.

Soil treatment engineering

Science.gov (United States)

Ivica, Kisic; Zeljka, Zgorelec; Aleksandra, Percin

2017-10-01

Soil is loose skin of the Earth, located between the lithosphere and atmosphere, which originated from parent material under the influence of pedogenetic processes. As a conditionally renewable natural resource, soil has a decisive influence on sustainable development of global economy, especially on sustainable agriculture and environmental protection. In recent decades, a growing interest prevails for non-production soil functions, primarily those relating to environmental protection. It especially refers to protection of natural resources whose quality depends directly on soil and soil management. Soil contamination is one of the most dangerous forms of soil degradation with the consequences that are reflected in virtually the entire biosphere, primarily at heterotrophic organisms, and also at mankind as a food consumer. Contamination is correlated with the degree of industrialization and intensity of agrochemical usage. It is typically caused by industrial activity, agricultural chemicals or improper disposal of waste. The negative effects caused by pollution are undeniable: reduced agricultural productivity, polluted water sources and raw materials for food are only a few of the effects of soil degradation, while almost all human diseases (excluding AIDS) may be partly related to the transport of contaminants, in the food chain or the air, to the final recipients - people, plants and animals. The remediation of contaminated soil is a relatively new scientific field which is strongly developing in the last 30 years and becoming a more important subject. In order to achieve quality remediation of contaminated soil it is very important to conduct an inventory as accurately as possible, that is, to determine the current state of soil contamination.

Temporal characterisation of soil-plant natural recovery related to fire severity in burned Pinus halepensis Mill. forests.

Science.gov (United States)

Moya, D; González-De Vega, S; García-Orenes, F; Morugán-Coronado, A; Arcenegui, V; Mataix-Solera, J; Lucas-Borja, M E; De Las Heras, J

2018-05-28

Despite Mediterranean ecosystems' high resilience to fire, both climate and land use change, and alterations in fire regimes increase their vulnerability to fire by affecting the long-term natural recovery of ecosystem services. The objective of this work is to study the effects of fire severity on biochemical soil indicators, such as chemical composition or enzymatic activity, related to time after fire and natural vegetation recovery (soil-plant interphase). Soil samples from three wildfires occurring 3, 15 and 21 years ago were taken in the south-eastern Iberian Peninsula (semiarid climate). Sampling included three fire severity levels in naturally regenerated (and changing to shrublands) Pinus halepensis Mill. forests. In the short-term post-fire period, phosphorus concentration, electrical conductivity and urease activity were positively linked to fire severity, and also influenced β-glucosidade activity in a negative relationship. During the 15-21-year post-fire period, the effects related to medium-high fire severity were negligible and soil quality indicators were linked to natural regeneration success. The results showed that most soil properties recovered in the long term after fire (21 years). These outcomes will help managers and stakeholders to implement management tools to stabilise soils and to restore burned ecosystems affected by medium-high fire severity. Such knowledge can be considered in adaptive forest management to reduce the negative effects of wildfires and desertification, and to improve the resilience of vulnerable ecosystems in a global change scenario. Copyright © 2018 Elsevier B.V. All rights reserved.

Exponential increase of publications related to soil water repellency

NARCIS (Netherlands)

Dekker, L.W.; Oostindie, K.; Ritsema, C.J.

2005-01-01

Soil water repellency is much more wide-spread than formerly thought. During the last decades, it has been a topic of study for soil scientists and hydrologists in at least 21 States of the USA, in Canada, Australia, New Zealand, Mexico, Colombia, Chile, Congo, Nepal, India, Hong Kong, Taiwan,

Conversion of woodlands changes soil related ecosystem services in Subsaharan Africa

Science.gov (United States)

Groengroeft, Alexander; Landschreiber, Lars; Luther-Mosebach, Jona; Masamba, Wellington; Zimmermann, Ibo; Eschenbach, Annette

2015-04-01

In remote areas of Subsaharan Africa, growing population, changes in consumption patterns and increasing global influences are leading to a strong pressure on the land resources. Smallholders convert woodlands by fire, grazing and clearing in different intensities thus changing soil properties and their ecosystem functioning. As the extraction of ecosystem services forms the basis of local wellbeing for many communities, the role of soils in providing ecosystem services is of high importance. Since 2010, "The Future Okavango" project investigates the quantification of ecosystem functions and services at four core research sites along the Okavango river basin (Angola, Namibia, Botswana, see http://www.future-okavango.org/). These research sites have an extent of 100 km2 each. Within our subproject the soil functions underlying ecosystem services are studied: The amount and spatial variation of soil nutrient reserves in woodland and their changes by land use activities, the water storage function as a basis for plant growth, and their effect on groundwater recharge and the carbon storage function. The scientific framework consists of four major parts including soil survey and mapping, lab analysis, field measurements and modeling approaches on different scales. A detailed soil survey leads to a measure of the spatial distribution, extent and heterogeneity of soil types for each research site. For generalization purposes, geomorphological and pedological characteristics are merged to derive landscape units. These landscape units have been overlaid by recent land use types to stratify the research site for subsequent soil sampling. On the basis of field and laboratory analysis, spatial distribution of soil properties as well as boundaries between neighboring landscape units are derived. The parameters analysed describe properties according to grain size distribution, organic carbon content, saturated and unsaturated hydraulic conductivity as well as pore space

Estimation of soil-soil solution distribution coefficient of radiostrontium using soil properties.

Science.gov (United States)

Ishikawa, Nao K; Uchida, Shigeo; Tagami, Keiko

2009-02-01

We propose a new approach for estimation of soil-soil solution distribution coefficient (K(d)) of radiostrontium using some selected soil properties. We used 142 Japanese agricultural soil samples (35 Andosol, 25 Cambisol, 77 Fluvisol, and 5 others) for which Sr-K(d) values had been determined by a batch sorption test and listed in our database. Spearman's rank correlation test was carried out to investigate correlations between Sr-K(d) values and soil properties. Electrical conductivity and water soluble Ca had good correlations with Sr-K(d) values for all soil groups. Then, we found a high correlation between the ratio of exchangeable Ca to Ca concentration in water soluble fraction and Sr-K(d) values with correlation coefficient R=0.72. This pointed us toward a relatively easy way to estimate Sr-K(d) values.

Ecological drivers of soil microbial diversity and soil biological networks in the Southern Hemisphere.

Science.gov (United States)

Delgado-Baquerizo, Manuel; Reith, Frank; Dennis, Paul G; Hamonts, Kelly; Powell, Jeff R; Young, Andrew; Singh, Brajesh K; Bissett, Andrew

2018-03-01

The ecological drivers of soil biodiversity in the Southern Hemisphere remain underexplored. Here, in a continental survey comprising 647 sites, across 58 degrees of latitude between tropical Australia and Antarctica, we evaluated the major ecological patterns in soil biodiversity and relative abundance of ecological clusters within a co-occurrence network of soil bacteria, archaea and eukaryotes. Six major ecological clusters (modules) of co-occurring soil taxa were identified. These clusters exhibited strong shifts in their relative abundances with increasing distance from the equator. Temperature was the major environmental driver of the relative abundance of ecological clusters when Australia and Antarctica are analyzed together. Temperature, aridity, soil properties and vegetation types were the major drivers of the relative abundance of different ecological clusters within Australia. Our data supports significant reductions in the diversity of bacteria, archaea and eukaryotes in Antarctica vs. Australia linked to strong reductions in temperature. However, we only detected small latitudinal variations in soil biodiversity within Australia. Different environmental drivers regulate the diversity of soil archaea (temperature and soil carbon), bacteria (aridity, vegetation attributes and pH) and eukaryotes (vegetation type and soil carbon) across Australia. Together, our findings provide new insights into the mechanisms driving soil biodiversity in the Southern Hemisphere. © 2018 by the Ecological Society of America.

Interactive effects of biochar ageing in soils related to feedstock, pyrolysis temperature, and historic charcoal production.

Science.gov (United States)

Heitkötter, Julian; Marschner, Bernd

2015-04-01

Biochar is suggested for soil amelioration and carbon sequestration, based on its assumed role as the key factor for the long-term fertility of Terra preta soils. Several studies have shown that certain biochar properties can undergo changes through ageing processes, especially regarding charge characteristics. However, only a few studies determined the changes of different biochars under the same incubation conditions and in different soils. The objective of this study was to characterize the changes of pine chip (PC)- and corn digestate (CD)-derived biochars pyrolyzed at 400 or 600 °C during 100 days of laboratory incubation in a historical kiln soil and an adjacent control soil. Separation between soil and biochar was ensured by using mesh bags. Especially, changes in charge characteristics depended on initial biochar properties affected by feedstock and pyrolysis temperature and on soil properties affected by historic charcoal production. While the cation exchange capacity (CEC) markedly increased for both CD biochars during incubation, PC biochars showed no or only slight increases in CEC. Corresponding to the changes in CEC, ageing of biochars also increased the amount of acid functional groups with increases being in average about 2-fold higher in CD biochars than in PC biochars. Further and in contrast to other studies, the surface areas of biochars increased during ageing, likely due to ash leaching and degradation of tar residues. Changes in CEC and surface acidity of CD biochars were more pronounced after incubation in the control soil, while surface area increase was higher in the kiln soil. Since the two acidic forest soils used in this this study did not greatly differ in physical or chemical properties, the main process for inducing these differences in the buried biochar most likely is related to the differences in dissolved organic carbon (DOC). Although the kiln soil contained about 50% more soil organic carbon due to the presence of charcoal

Influence of extractable soil manganese on oxidation capacity of different soils in Korea

Science.gov (United States)

Chon, Chul-Min; Kim, Jae Gon; Lee, Gyoo Ho; Kim, Tack Hyun

2008-08-01

We examined the relationship between soil oxidation capacity and extractable soil manganese, iron oxides, and other soil properties. The Korean soils examined in this study exhibited low to medium Cr oxidation capacities, oxidizing 0.00-0.47 mmol/kg, except for TG-4 soils, which had the highest capacity for oxidizing added Cr(III) [>1.01 mmol/kg of oxidized Cr(VI)]. TG and US soils, with high Mn contents, had relatively high oxidation capacities. The Mn amounts extracted by dithionite-citrate-bicarbonate (DCB) (Mnd), NH2OH·HCl (Mnh), and hydroquinone (Mnr) were generally very similar, except for the YS1 soils, and were well correlated. Only small proportions of either total Mn or DCB-extractable Mn were extracted by NH2OH·HCl and hydroquinone in the YS1 soils, suggesting inclusion of NH2OH·HCl and hydroquinone-resistant Mn oxides, because these extractants are weaker reductants than DCB. No Cr oxidation test results were closely related to total Mn concentrations, but Mnd, Mnh, and Mnr showed a relatively high correlation with the Cr tests ( r = 0.655-0.851; P Mnh were better correlated with the Cr oxidation tests than was the Mnr concentration, suggesting that the oxidation capacity of our soil samples can be better explained by Mnd and Mnh than by Mnr. The first component in principal components analysis indicated that extractable soil Mn was a main factor controlling net Cr oxidation in the soils. Total soil Mn, Fe oxides, and the clay fraction are crucial for predicting the mobility of pollutants and heavy metals in soils. The second principal component indicated that the presence of Fe oxides in soils had a significant relationship with the clay fraction and total Mn oxide, and was also related to heavy-metal concentrations (Zn, Cd, and Cu, but not Pb).

Soil threats and soil protection: the role of biotechnology

International Nuclear Information System (INIS)

Rubio, J. L.

2009-01-01

The concept of soil conservation/soil protection in its wider sense has undergone important changes through history. Perceptions of soil as a crucial base of life in ancient cultures progressively evolved to a more pragmatic vision, with close connection to food production for survival. For centuries, agrarian production and the provision of food for humankind remained the main and crucial vision of the interaction of societies with soil. However, there are also some other new and important concepts related to soil which have progressively developed. (Author)

Electrochemical soil remediation - accelerated soil weathering?

Energy Technology Data Exchange (ETDEWEB)

Ottosen, L.M.; Villumsen, A.; Hansen, H.K.; Jensen, P.E.; Pedersen, A.J. [Dept. of Civil Engineering, Technical Univ. of Denmark, Lyngby (Denmark); Ribeiro, A.B. [Dept. of Environmental Sciences and Engineering, New Univ. of Lisbon, Monte da Caparica (Portugal)

2001-07-01

In electrochemical soil remediation systems, where enhancement solutions and complexing agents are not used, a developing acidic front is mobilizing the heavy metals and the electric current is removing the mobilized elements from the soil. The hypotheses investigated in this paper is whether this process may be comparable to the chemical soil weathering that occurs in the environment due to the acidic rain, where the mobilized elements are removed from the soil by the penetrating water. Even through the weathering process is highly accelerated in the electrochemical cell. This paper shows results from electrodialytic remediation experiments performed with four different Danish heavy metal polluted soils. The main emphasis is laid on the relation between the developing acidic front and electromigration of Cu, Zn, Mn, Mg, Fe and Ca. (orig.)

Impacts of prescribed fire on soil loss and soil quality

NARCIS (Netherlands)

Shakesby, Richard A.; Martins Bento, Celia; Ferreira, Carla S.S.; Ferreira, António J.D.; Stoof, C.R.; Urbanek, Emilia; Walsh, Rory P.D.

2015-01-01

Prescribed (controlled) fire has recently been adopted as an important wildfire-fighting strategy in the Mediterranean. Relatively little research, however, has assessed its impacts on soil erosion and soil quality. This paper investigates hillslope-scale losses of soil, organic matter and

Epidemiology of soil-transmitted helminthiases-related mortality in Brazil.

Science.gov (United States)

Martins-Melo, Francisco R; Ramos, Alberto N; Alencar, Carlos H; Lima, Mauricélia S; Heukelbach, Jorg

2017-04-01

Soil-transmitted helminth (STH) infections are widely distributed in tropical and subtropical areas, including Brazil. We performed a nationwide population-based study including all deaths in Brazil from 2000 to 2011, in which STHs (ascariasis, trichuriasis and/or hookworm infection) were mentioned on death certificates, either as underlying or as associated causes of death. Epidemiological characteristics, time trends and spatial analysis of STH-related mortality were analysed. STHs was identified on 853/12 491 280 death certificates: 827 (97·0%) deaths related to ascariasis, 25 (2·9%) to hookworm infections, and 1 (0·1%) to trichuriasis. The average annual age-adjusted mortality rate was 0·34/1 000 000 inhabitants (95% confidence interval: 0·27-0·44). Females, children Brazil, a considerable number of deaths is caused by STHs, with ascariasis responsible for the vast majority. There were marked regional differences, affecting mainly children and vulnerable populations.

Relating the effects of protein type and content in increased-protein cheese pies to consumers' perception of satiating capacity.

Science.gov (United States)

Marcano, J; Varela, P; Fiszman, S

2015-02-01

Since proteins have been shown to have the highest satiation-inducing effects of all the macronutrients, increasing the protein level is one of the main strategies for designing foods with enhanced satiating capacity. However, few studies analyze the effect that protein addition has on the texture and flavor characteristics of the target food item to relate it to the expected satiating capacity it elicits. The present work studied cheese pies with three levels of soy and whey proteins. Since the protein level altered the rheological behavior of the batters before baking and the texture of the baked pies, the feasibility of adding several protein levels for obtaining a range of final products was investigated. A check-all-that-apply questionnaire containing 32 sensory and non-sensory characteristics of the samples was given to consumers (n = 131) who also scored the perceived samples' satiating capacity. The results showed that the type and content of protein contributed distinctive sensory characteristics to the samples that could be related to their satiating capacity perception. Harder and drier samples (high protein levels) were perceived as more satiating with less perceptible sweet and milky cheese pie characteristic flavors. Soy contributed an off-flavour. These results will contribute to a better understanding of the interrelation of all these factors, aiding the development of highly palatable solid foods with enhanced satiating capacities.

Effects of soil water depletion on the water relations in tropical kudzu

Directory of Open Access Journals (Sweden)

Adaucto Bellarmino de Pereira-Netto

1999-07-01

Full Text Available Tropical kudzu (Pueraria phaseoloides (Roxb. Benth., Leguminosae: Faboideae is native to the humid Southeastern Asia. Tropical kudzu has potential as a cover crop in regions subjected to dryness. The objective of this paper was to evaluate the effect of soil water depletion on leaflet relative water content (RWC, stomatal conductance (g and temperature (T L in tropical kudzu. RWC of waterstressed plants dropped from 96 to 78%, following a reduction in SWC from 0.25 to 0.17 g (H2O.g (dry soil-1.Stomatal conductance of stressed plants decreased from 221 to 98 mmol.m-2.s-1, following the reduction in soil water content (SWC. The day after re-irrigation, g of water stressed plants was 15% lower than g of unstressed plants. Differences in T L between waterstressed and unstressed plants (deltaT L rose linearly from 0.1 to 2.2ºC following progressive water deficit. RWC and T L of waterstressed plants paralled RWC and T L of unstressed plants the day after reirrigation. The strong decrease in SWC found in this study only induced moderate water stress in tropical kudzu. In addition, tropical kudzu recover rapidly from the induced water stress after the re-irrigation.

Potential microbial risk factors related to soil amendments and irrigation water of potato crops.

Science.gov (United States)

Selma, M V; Allende, A; López-Gálvez, F; Elizaquível, P; Aznar, R; Gil, M I

2007-12-01

This study assesses the potential microbial risk factors related to the use of soil amendments and irrigation water on potato crops, cultivated in one traditional and two intensive farms during two harvest seasons. The natural microbiota and potentially pathogenic micro-organisms were evaluated in the soil amendment, irrigation water, soil and produce. Uncomposted amendments and residual and creek water samples showed the highest microbial counts. The microbial load of potatoes harvested in spring was similar among the tested farms despite the diverse microbial levels of Listeria spp. and faecal coliforms in the potential risk sources. However, differences in total coliform load of potato were found between farms cultivated in the autumn. Immunochromatographic rapid tests and the BAM's reference method (Bacteriological Analytical Manual; AOAC International) were used to detect Escherichia coli O157:H7 from the potential risk sources and produce. Confirmation of the positive results by polymerase chain reaction procedures showed that the immunochromatographic assay was not reliable as it led to false-positive results. The potentially pathogenic micro-organisms of soil amendment, irrigation water and soil samples changed with the harvest seasons and the use of different agricultural practices. However, the microbial load of the produce was not always influenced by these risk sources. Improvements in environmental sample preparation are needed to avoid interferences in the use of immunochromatographic rapid tests. The potential microbial risk sources of fresh produce should be regularly controlled using reliable detection methods to guarantee their microbial safety.

The Impacts of Thermal and Smouldering Remediation on Soil Properties Related to Rehabilitation and Plant Growth

Science.gov (United States)

Pape, A.; Knapp, C.; Switzer, C.

2012-04-01

Tens of thousands of sites worldwide are contaminated with toxic non-aqueous phase liquids (NAPLs) reducing their economic and environmental value. As a result a number of treatments involving heat and smouldering have been developed to desorb and extract or destroy these contaminants including; steam injection (treatments are efficient enough for the soil to be safe for use, but the heating may unintentionally reduce the capability of the soil to act as a growing media. To investigate the effects of elevated temperature soils samples were heated at fixed temperatures (ambient to 1000°C) for one hour or smouldered after artificial contamination. Temperatures up to 105°C resulted in very little change in soil properties but at 250°C nutrients became more available. At 500°C little organic matter or nitrogen remained in the soil and clay sized particles started to decompose and aggregate. By 1000°C total and available phosphorus were very low, cation exchange capacity had been reduced, pH had increased and the clay fraction had been completely lost. Similar changes were observed in smouldered soils with variations dependent upon remediation conditions. As a result the smouldered soils will require nutrient supplementation to facilitate plant growth. Nutrient addition will also improve the physical properties of the soil and serve to re-inoculate it with microbes, particularly if an organic source such as compost or sewage sludge is used. The soils may remain effective growing media during lower temperature treatments; however some sort of soil inoculant would also be beneficial as these temperatures are sufficient to sterilise the system, which may impact nutrient cycling. Further work involving months-long exposure to the elevated temperatures that are typical of thermal remediation would be necessary to evaluate these changes relative to treatment conditions. Using this information rehabilitation packages can be developed and tailored to specific treatments as

Influence of Soils, Riparian Zones, and Hydrology on Nutrients, Herbicides, and Biological Relations in Midwestern Agricultural Streams

Science.gov (United States)

Porter, S.

2001-12-01

Chemical, biological, and habitat conditions were characterized in 70 streams in the upper Mississippi River basin during August 1997, as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program. The study was designed to evaluate algal and macroinvertebrate responses to high agricultural intensity in relation to nonpoint sources of nutrients and herbicides, characteristics of basin soils, wooded-riparian vegetation, and hydrology. Concentrations and forms of nutrients, herbicides and their metabolites, and seston constituents varied significantly with regional differences in soil properties, ground and surface water relations, density of riparian trees, and precedent rainfall-runoff conditions. Dissolved nitrate concentrations were relatively low in streams with high algal productivity; however, nitrate concentrations increased with basin water yield, which was associated with the regional distribution of rainfall during the month prior to the study. Stream productivity and respiration were positively correlated with seston (phytoplankton) chlorophyll concentrations, which were significantly larger in streams in areas with poorly drained soils and low riparian-tree density. Concentrations of dissolved phosphorus were low in streams where periphyton biomass was high. Periphyton biomass was relatively larger in streams with clear water and low abundance of macroinvertebrates that consume algae. Periphyton biomass decreased rapidly with modest increases in the abundance of scrapers such as snails and certain mayfly taxa. Differences in dissolved oxygen, organic carbon, stream velocity, and precedent hydrologic conditions explained much of the variance in macroinvertebrate community structure. The overall number of macroinvertebrate species and number of mayfly, caddisfly, and stonefly (EPT) taxa that are sensitive to organic enrichment were largest in streams with moderate periphyton biomass, in areas with moderately-well drained soils

Cultural Patterns of Soil Understanding

Science.gov (United States)

Patzel, Nikola; Feller, Christian

2017-04-01

Living soil supports all terrestrial ecosystems. The only global threat to earth's soils comes from human societies' land use and resource consuming activities. Soil perception and understanding by soil scientists are mainly drawn from biophysical parameters and found within Cartesian rationality, and not, or much less consciously from its rather intangible cultural dimension. But nevertheless, human soil perception, soil awareness, and soil relation are a cultural phenomenon, too. Aiming at soil awareness and education, it is of first order importance for the soil science community and the IUSS to study, discuss and communicate also about the cultural perceptions and representations of soil. For any society, cultural patterns in their relation to soil encompass: (i) General culturally underlying structures like (religious or 'secular') myths and belief systems. (ii) The personal, individual relation to/with and behaviour towards soil. This includes implicit concepts of soil being part integral concepts of landscape because the large majority of humans don't see soil as a distinct object. This communication would be to make evident: (i) the importance of cultural patterns and psychic/psychological background concerning soil, by case studies and overviews on different cultural areas, (ii) the necessity to develop reflections on this topic as well to communicate about soil with large public, as to raise awareness soil scientists to the cultural dimension of soils. A working group was recently founded at IUSS (Division 4) on this topic.

Rice production in relation to soil quality under different rice-based cropping systems

Science.gov (United States)

Tran Ba, Linh; Sleutel, Steven; Nguyen Van, Qui; Thi, Guong Vo; Le Van, Khoa; Cornelis, Wim

2016-04-01

Soil quality of shallow paddy soils may be improved by introducing upland crops and thus a more diverse crop cultivation pattern. Yet, the causal relationship between crop performance and enhanced soil traits in rice-upland crop rotations remains elusive. The objectives of this study were to (i) find correlations among soil properties under different rice-upland crop systems and link selected soil properties to rice growth and yield, (ii) present appropriate values of soil parameters for sustainable rice productivity in heavy clay soil, (iii) evaluate the effect of rotating rice with upland crops on rice yield and economic benefit in a long-term experiment. A rice-upland crop rotational field experiment in the Vietnamese Mekong delta was conducted for 10 years using a randomized complete block design with four treatments and four replications. Treatments were: (i) rice-rice-rice (control - conventional system as farmers' practice), (ii) rice-maize-rice, (iii) rice-mung bean-rice, and (iv) rice-mung bean-maize. Soil and plant sampling were performed after harvest of the rice crop at the end of the final winter-spring cropping season (i.e. year 10). Results show differences in rice growth and yield, and economic benefit as an effect of the crop rotation system. These differences were linked with changes in bulk density, soil porosity, soil aggregate stability index, soil penetration resistance, soil macro-porosity, soil organic carbon, acid hydrolysable soil C and soil nutrient elements, especially at soil depth of 20-30 cm. This is evidenced by the strong correlation (P < 0.01) between rice plant parameters, rice yield and soil properties such as bulk density, porosity, penetration resistance, soil organic carbon and Chydrolysable. It turned out that good rice root growth and rice yield corresponded to bulk density values lower than 1.3 Mg m-3, soil porosity higher than 50%, penetration resistance below 1.0 MPa, and soil organic carbon above 25 g kg-1. The optimal

Linking measurements of biodegradability, thermal stability and chemical composition to evaluate the effects of management on soil organic matter

Science.gov (United States)

Gregorich, Ed; Gillespie, Adam; Beare, Mike; Curtin, Denis; Sanei, Hamed; Yanni, Sandra

2015-04-01

The stability of soil organic matter (SOM) as it relates to resistance to microbial degradation has important implications for nutrient cycling, emission of greenhouse gases, and C sequestration. Hence, there is interest in developing new ways to accurately quantify and characterise the labile and stable forms of soil organic C. Our objectives in this study were to evaluate and describe relationships among the biodegradability, thermal stability and chemistry of SOM in soil under widely contrasting management regimes. Samples from the same soil under permanent pasture, an arable cropping rotation, and chemical fallow were fractionated (sand: 2000-50 μm; silt: 50-5 μm, and clay: managements and that sand-associated organic matter was significantly more susceptible than that in the silt or clay fractions. Analysis by XANES showed accumulation of carboxylates and strong depletion of amides (protein) and aromatics in the fallow whole soil. Moreover, protein depletion was most significant in the sand fraction of the fallow soil. Sand fractions in fallow and cropped soils were, however, enriched in plant-derived phenols, aromatics and carboxylates compared to the sand fraction of pasture soils. In contrast, ketones, which have been identified as products of microbially-processed organic matter, were slightly enriched in the silt fraction of the pasture soil. These data suggest reduced inputs and cropping restrict the decomposition of plant residues and, without supplemental N additions, protein-N in native SOM is significantly mineralized in fallow systems to meet microbial C mineralization demands. Analytical pyrolysis showed distinct differences in the thermal stability of SOM among the size fractions and management treatments; it also showed that the loss of SOM generally involved dehydrogenation. The temperature at which half of the C was pyrolyzed showed strong correlation with mineralizable C and thus provides solid evidence for a link between the biological and

Vertical distribution of three namatode species in relation to certain soil properties.

Science.gov (United States)

Brodie, B B

1976-07-01

Population densities of Belonolaimus longicaudatus, Pratylenchus brachyurus, and Trichodorus christiei were determined from soil samples taken weekly in Tifton, Georgia during a 14-month period (except for April and May) at 15-cm increments to a depth of 105 cm. Belonolaimus longicaudatus predominately inhabited the top 30 cm of soil that was 87-88% sand, 6-7% silt, and 5-7% clay. No specimens were found below 60 cm where the soil was 76-79% sand, 5-6% silt, and 15-19% clay. Highest population densities occurred during June through September when temperature in the top 30 cm of soil was 22-25 C and soil moisture was from 9 to 20% by volume. Pratylenchus brachyurus was found at all depths, but population densities were greatest 45-75 cm deep where the soil was 78-79% sand, 6% silt, and 15-16% clay. In the months monitored, highest population densities occurred during March, June, and December when the soil temperature 45-75 cm deep was 14-17 C and soil moisture was 22-42%. Trichodorus christiei was found at all depths, but population densities were highest 30 cm deep where the soil was 83% sand, 5% silt, and 12% clay. Highest population densities occurred during December through March when the soil temperature 30 cm deep was 11-17 C and soil moisture was 18-23%.

Repression of fungal plant pathogens and fungal-related contaminants: Selected ecosystem services by soil fauna communities in agroecosystems

Science.gov (United States)

Meyer-Wolfarth, Friederike; Schrader, Stefan; Oldenburg, Elisabeth; Brunotte, Joachim; Weinert, Joachim

2017-04-01

In agroecosystems soil-borne fungal plant diseases are major yield-limiting factors which are difficult to control. Fungal plant pathogens, like Fusarium species, survive as a saprophyte in infected tissue like crop residues and endanger the health of the following crop by increasing the infection risk for specific plant diseases. In infected plant organs, these pathogens are able to produce mycotoxins. Mycotoxins like deoxynivalenol (DON) persist during storage, are heat resistant and of major concern for human and animal health after consumption of contaminated food and feed, respectively. Among fungivorous soil organisms, there are representatives of the soil fauna which are obviously antagonistic to a Fusarium infection and the contamination with mycotoxins. Specific members of the soil macro-, meso-, and microfauna provide a wide range of ecosystem services including the stimulation of decomposition processes which may result in the regulation of plant pathogens and the degradation of environmental contaminants. Investigations under laboratory conditions and in field were conducted to assess the functional linkage between soil faunal communities and plant pathogenic fungi (Fusarium culmorum). The aim was to examine if Fusarium biomass and the content of its mycotoxin DON decrease substantially in the presence of soil fauna (earthworms: Lumbricus terrestris, collembolans: Folsomia candida and nematodes: Aphelenchoides saprophilus) in a commercial cropping system managed with conservation tillage located in Northern Germany. The results of our investigations pointed out that the degradation performance of the introduced soil fauna must be considered as an important contribution to the biodegradation of fungal plant diseases and fungal-related contaminants. Different size classes within functional groups and the traits of keystone species appear to be significant for soil function and the provision of ecosystem services as in particular L. terrestris revealed to

Cs-137 sorption and desorption in relation to properties of 17 soils

International Nuclear Information System (INIS)

Kerpen, W.

1988-01-01

For Cs-137 sorption and desorption studies material of Ap and Ah horizons from 17 soils with wide varying soil properties was selected. The soils were: Podsol, Luvisol, Chernozem, Cambisol, Phaeozem, Arenosol, Gleysol and other soils. The Cs-137 sorption and desorption experiments were carried out in aqueous solution (20 g of soil) under standardized conditions for two reasons: (1) to determine the amounts of Cs-137 sorption, desorption and remains as a function of different soils and (2) to evaluate the soil parameters which govern the sorption, desorption processes. Concerning the second point the sorption values, the amount of 137 Cs desorbed within four desorption cycles and the 137 Cs remains after four desorption cycles were correlated with pH, grain size, sorption capacity (CEC), and other soil properties. It will be shown that generally Cs-137 sorption, desorption and remains depend primarily on the pH of the soil. The middle sand proved to be an indicator for the strenght of sorption, and desorption processes. Sorption and desorption studies lead to the same results as found in biotest experiments

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain.

Science.gov (United States)

Shi, Yu; Li, Yuntao; Xiang, Xingjia; Sun, Ruibo; Yang, Teng; He, Dan; Zhang, Kaoping; Ni, Yingying; Zhu, Yong-Guan; Adams, Jonathan M; Chu, Haiyan

2018-02-05

The relative importance of stochasticity versus determinism in soil bacterial communities is unclear, as are the possible influences that alter the balance between these. Here, we investigated the influence of spatial scale on the relative role of stochasticity and determinism in agricultural monocultures consisting only of wheat, thereby minimizing the influence of differences in plant species cover and in cultivation/disturbance regime, extending across a wide range of soils and climates of the North China Plain (NCP). We sampled 243 sites across 1092 km and sequenced the 16S rRNA bacterial gene using MiSeq. We hypothesized that determinism would play a relatively stronger role at the broadest scales, due to the strong influence of climate and soil differences in selecting many distinct OTUs of bacteria adapted to the different environments. In order to test the more general applicability of the hypothesis, we also compared with a natural ecosystem on the Tibetan Plateau. Our results revealed that the relative importance of stochasticity vs. determinism did vary with spatial scale, in the direction predicted. On the North China Plain, stochasticity played a dominant role from 150 to 900 km (separation between pairs of sites) and determinism dominated at more than 900 km (broad scale). On the Tibetan Plateau, determinism played a dominant role from 130 to 1200 km and stochasticity dominated at less than 130 km. Among the identifiable deterministic factors, soil pH showed the strongest influence on soil bacterial community structure and diversity across the North China Plain. Together, 23.9% of variation in soil microbial community composition could be explained, with environmental factors accounting for 19.7% and spatial parameters 4.1%. Our findings revealed that (1) stochastic processes are relatively more important on the North China Plain, while deterministic processes are more important on the Tibetan Plateau; (2) soil pH was the major factor in shaping

Exploring Sequence Characteristics Related to High- Level Production of Secreted Proteins in Aspergillus niger

NARCIS (Netherlands)

Van den Berg, B.A.; Reinders, M.J.T.; Hulsman, M.; Wu, L.; Pel, H.J.; Roubos, J.A.; De Ridder, D.

2012-01-01

Protein sequence features are explored in relation to the production of over-expressed extracellular proteins by fungi. Knowledge on features influencing protein production and secretion could be employed to improve enzyme production levels in industrial bioprocesses via protein engineering. A large

Soil CO2 Dynamics in a Tree Island Soil of the Pantanal: The Role of Soil Water Potential

Science.gov (United States)

Johnson, Mark S.; Couto, Eduardo Guimarães; Pinto Jr, Osvaldo B.; Milesi, Juliana; Santos Amorim, Ricardo S.; Messias, Indira A. M.; Biudes, Marcelo Sacardi

2013-01-01

The Pantanal is a biodiversity hotspot comprised of a mosaic of landforms that differ in vegetative assemblages and flooding dynamics. Tree islands provide refuge for terrestrial fauna during the flooding period and are particularly important to the regional ecosystem structure. Little soil CO2 research has been conducted in this region. We evaluated soil CO2 dynamics in relation to primary controlling environmental parameters (soil temperature and soil water). Soil respiration was computed using the gradient method using in situ infrared gas analyzers to directly measure CO2 concentration within the soil profile. Due to the cost of the sensors and associated equipment, this study was unreplicated. Rather, we focus on the temporal relationships between soil CO2 efflux and related environmental parameters. Soil CO2 efflux during the study averaged 3.53 µmol CO2 m−2 s−1, and was equivalent to an annual soil respiration of 1220 g C m−2 y−1. This efflux value, integrated over a year, is comparable to soil C stocks for 0–20 cm. Soil water potential was the measured parameter most strongly associated with soil CO2 concentrations, with high CO2 values observed only once soil water potential at the 10 cm depth approached zero. This relationship was exhibited across a spectrum of timescales and was found to be significant at a daily timescale across all seasons using conditional nonparametric spectral Granger causality analysis. Hydrology plays a significant role in controlling CO2 efflux from the tree island soil, with soil CO2 dynamics differing by wetting mechanism. During the wet-up period, direct precipitation infiltrates soil from above and results in pulses of CO2 efflux from soil. The annual flood arrives later, and saturates soil from below. While CO2 concentrations in soil grew very high under both wetting mechanisms, the change in soil CO2 efflux was only significant when soils were wet from above. PMID:23762259

Oxysterol-binding protein-related protein (ORP) 9 is a PDK-2 substrate and regulates Akt phosphorylation.

Science.gov (United States)

Lessmann, Eva; Ngo, Mike; Leitges, Michael; Minguet, Susana; Ridgway, Neale D; Huber, Michael

2007-02-01

The oxysterol-binding protein and oxysterol-binding protein-related protein family has been implicated in lipid transport and metabolism, vesicle trafficking and cell signaling. While investigating the phosphorylation of Akt/protein kinase B in stimulated bone marrow-derived mast cells, we observed that a monoclonal antibody directed against phospho-S473 Akt cross-reacted with oxysterol-binding protein-related protein 9 (ORP9). Further analysis revealed that mast cells exclusively express ORP9S, an N-terminal truncated version of full-length ORP9L. A PDK-2 consensus phosphorylation site in ORP9L and OPR9S at S287 (VPEFS(287)Y) was confirmed by site-directed mutagenesis. In contrast to Akt, increased phosphorylation of ORP9S S287 in stimulated mast cells was independent of phosphatidylinositol 3-kinase but sensitive to inhibition of conventional PKC isotypes. PKC-beta dependence was confirmed by lack of ORP9S phosphorylation at S287 in PKC-beta-deficient, but not PKC-alpha-deficient, mast cells. Moreover, co-immunoprecipitation of PKC-beta and ORP9S, and in vitro phosphorylation of ORP9S in this complex, argued for direct phosphorylation of ORP9S by PKC-beta, introducing ORP9S as a novel PKC-beta substrate. Akt was also detected in a PKC-beta/ORP9S immune complex and phosphorylation of Akt on S473 was delayed in PKC-deficient mast cells. In HEK293 cells, RNAi experiments showed that depletion of ORP9L increased Akt S473 phosphorylation 3-fold without affecting T308 phosphorylation in the activation loop. Furthermore, mammalian target of rapamycin was implicated in ORP9L phosphorylation in HEK293 cells. These studies identify ORP9 as a PDK-2 substrate and negative regulator of Akt phosphorylation at the PDK-2 site.

Soil washing results for mixed waste pond soils at Hanford

International Nuclear Information System (INIS)

Gerber, M.A.; Freeman, H.D.; Baker, E.G.; Riemath, W.F.

1991-01-01

Soil washing technology was assessed as a means for remediating soil contaminated with mixed wastes primarily composed of heavy metals and radionuclides. The soils at the US Department of Energy's Hanford Site are considered suitable for soil washing because of their relatively low quantities of silt and clay. However, in a limited number of soil washing experiments using soils from different locations in the north pond of the 300 Area, the degree of decontamination achieved for the coarse fraction of the soil varied considerably. Part of this variation appears to be due to the presence of a discrete layer of contaminated sediment found in some of the samples

Soil physical properties on Venezuelan steeplands: Applications to soil conservation planning

International Nuclear Information System (INIS)

Delgado, F.

2004-01-01

This paper presents a framework to support decision making for soil conservation on Venezuelan steeplands. The general approach is based on the evaluation of two important land qualities: soil productivity and soil erosion risk, both closely related to soil physical properties. Soil productivity can be estimated from soil characteristics such as soil air-water relationships, soil impedances and soil fertility. On the other hand, soil erosion risk depends basically on soil hydrologic properties, rainfall aggressiveness and terrain slope. Two indexes are obtained from soil and land characteristics: soil productivity index (PI) and erosion risk index (ERI), each one evaluates the respective land quality. Subsequently, a matrix with these two qualities shows different land classes as well as soil conservation priorities, conservation requirements and proposed land uses. The paper shows also some applications of the soil productivity index as an approach to evaluate soil loss tolerance for soil conservation programs on tropical steeplands. (author)

Glycated Lysine Residues: A Marker for Non-Enzymatic Protein Glycation in Age-Related Diseases

Directory of Open Access Journals (Sweden)

Nadeem A. Ansari

2011-01-01

Full Text Available Nonenzymatic glycosylation or glycation of macromolecules, especially proteins leading to their oxidation, play an important role in diseases. Glycation of proteins primarily results in the formation of an early stage and stable Amadori-lysine product which undergo further irreversible chemical reactions to form advanced glycation endproducts (AGEs. This review focuses these products in lysine rich proteins such as collagen and human serum albumin for their role in aging and age-related diseases. Antigenic characteristics of glycated lysine residues in proteins together with the presence of serum autoantibodies to the glycated lysine products and lysine-rich proteins in diabetes and arthritis patients indicates that these modified lysine residues may be a novel biomarker for protein glycation in aging and age-related diseases.

Variability of the soil-to-plant radiocaesium transfer factor for Japanese soils predicted with soil and plant properties.

Science.gov (United States)

Uematsu, Shinichiro; Vandenhove, Hildegarde; Sweeck, Lieve; Van Hees, May; Wannijn, Jean; Smolders, Erik

2016-03-01

Food chain contamination with radiocaesium (RCs) in the aftermath of the Fukushima accident calls for an analysis of the specific factors that control the RCs transfer. Here, soil-to-plant transfer factors (TF) of RCs for grass were predicted from the potassium concentration in soil solution (mK) and the Radiocaesium Interception Potential (RIP) of the soil using existing mechanistic models. The mK and RIP were (a) either measured for 37 topsoils collected from the Fukushima accident affected area or (b) predicted from the soil clay content and the soil exchangeable potassium content using the models that had been calibrated for European soils. An average ammonium concentration was used throughout in the prediction. The measured RIP ranged 14-fold and measured mK varied 37-fold among the soils. The measured RIP was lower than the RIP predicted from the soil clay content likely due to the lower content of weathered micas in the clay fraction of Japanese soils. Also the measured mK was lower than that predicted. As a result, the predicted TFs relying on the measured RIP and mK were, on average, about 22-fold larger than the TFs predicted using the European calibrated models. The geometric mean of the measured TFs for grass in the affected area (N = 82) was in the middle of both. The TFs were poorly related to soil classification classes, likely because soil fertility (mK) was obscuring the effects of the soil classification related to the soil mineralogy (RIP). This study suggests that, on average, Japanese soils are more vulnerable than European soils at equal soil clay and exchangeable K content. The affected regions will be targeted for refined model validation. Copyright © 2015 Elsevier Ltd. All rights reserved.

Deriving soil function maps to assess related ecosystem services using imaging spectroscopy in the Lyss agricultural area, Switzerland

Science.gov (United States)

Diek, Sanne; de Jong, Rogier; Braun, Daniela; Böhler, Jonas; Schaepman, Michael

2014-05-01

. We demonstrate the use of interpolated soil function maps as well as non-contiguous (but combined) vegetation and soil function maps and comment on their combined usability to assess related ecosystem services.

Elaboration of a framework for the compilation of countrywide, digital maps for the satisfaction of recent demands on spatial, soil related information in Hungary

Science.gov (United States)

Pásztor, László; Dobos, Endre; Szabó, József; Bakacsi, Zsófia; Laborczi, Annamária

2013-04-01

There is a heap of evidences that demands on soil related information have been significant worldwide and it is still increasing. Soil maps were typically used for long time to satisfy these demands. By the spread of GI technology, spatial soil information systems (SSIS) and digital soil mapping (DSM) took the role of traditional soil maps. Due to the relatively high costs of data collection, new conventional soil surveys and inventories are getting less and less frequent, which fact valorises legacy soil information and the systems which are serving the their digitally processed version. The existing data contain a wealth of information that can be exploited by proper methodology. Not only the degree of current needs for soil information has changed but also its nature. Traditionally the agricultural functions of soils were focussed on, which was also reflected in the methodology of data collection and mapping. Recently the multifunctionality of soils is getting to gain more and more ground; consequently information related to additional functions of soils becomes identically important. The new types of information requirements however cannot be fulfilled generally with new data collections at least not on such a level as it was done in the frame of traditional soil surveys. Soil monitoring systems have been established for the collection of recent information on the various elements of the DPSIR (Driving Forces-Pressures-State-Impacts-Responses) framework, but the primary goal of these systems has not been mapping by all means. And definitely this is the case concerning the two recently working Hungarian soil monitoring systems. In Hungary, presently soil data requirements are fulfilled with the recently available datasets either by their direct usage or after certain specific and generally fortuitous, thematic and/or spatial inference. Due to the more and more frequently emerging discrepancies between the available and the expected data, there might be notable

Oilseed Radish (Raphanus Sativus) Effects on Soil Structure and Soil Water Relations

Science.gov (United States)

Oilseed radish (Raphanus sativus spp. oleifera) reduces nematode populations. Fall-incorporated radish biomass may also improve soil physical and hydraulic properties to increase the yield and quality of subsequently grown sugarbeet (Beta vulgaris L.). This field study determined radish effects on...

RESEARCHES REGARDING TO CONTROL SPECIES CONVOLVULUS ARVENSIS L. ON RELATION WITH SOIL TILLAGE SYSTEMS

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Teodor RUSU

2007-07-01

Full Text Available The research paper presents the results obtained in the pedoclimatic conditions of Cluj-Napoca, Romania, concerning the control of Convolvulus arvensis L species. To determine or accomplish the relation with soil tillage systems and herbicides applied on soy-bean, wheat and maize crop. Minimum tillage systems determine an increasing percentage of Convolvulus arvensis species at weeding, different depending on experimental variant and on crop: 11.2-39.1% at soy-bean, 0.9-4.2% at wheat and 11.9-24.4% at maize crop. The number of Convolvulus arvensis seeds increases with 169% at tillage variant with disk + rotary harrow, 77% of these being located in the first 10 cm soil depth.

Relating Bioavailability Parameters to the Sorbent Characteristics of PAH Polluted Soils

DEFF Research Database (Denmark)

Bartolome, N.; Hilber, I.; Schulin, R.

2015-01-01

Regulation of Hydrophobic Organic Contaminants (HOC) such as polycyclic aromatic hydrocarbons (PAHs) in soil is still based on total concentrations. However, many studies have demonstrated that not all of a pollutant’s content in soil is equally available to organisms (Reichenberg & Mayer 2006...... to several sorbent characteristics including organic and black carbon content. The results will provide a better understanding of bioavailability of PAHs in soils. Moreover, the outcomes will be discussed regarding to the potential application of chemical proxies in soil pollution risk assessment......). Over the last decade, intensive effort has been made to incorporate bioavailability into risk assessment (Cachada et al. 2014). Here, we compare total concentrations of PAH with two bioavailability parameters in 30 different soil samples from the archive of the standardized National and Zurich Cantonal...

Reduction of soil tare by improved uprooting of sugar beet : a soil dynamic approach

NARCIS (Netherlands)

Vermeulen, G.D.

2001-01-01

The relative amount of soil in sugar beet lots, called soil tare, should be reduced to curtail the cost and negative aspects of soil tare. Highest soil tare occurs in beet lots harvested out of wet clay soil. The main problem is that commonly-used share lifters press the soil against the

Transport of Pathogen Surrogates in Soil Treatment Units: Numerical Modeling

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Ivan Morales

2014-04-01

Full Text Available Segmented mesocosms (n = 3 packed with sand, sandy loam or clay loam soil were used to determine the effect of soil texture and depth on transport of two septic tank effluent (STE-borne microbial pathogen surrogates—green fluorescent protein-labeled E. coli (GFPE and MS-2 coliphage—in soil treatment units. HYDRUS 2D/3D software was used to model the transport of these microbes from the infiltrative surface. Mesocosms were spiked with GFPE and MS-2 coliphage at 105 cfu/mL STE and 105–106 pfu/mL STE, respectively. In all soils, removal rates were >99.99% at 25 cm. The transport simulation compared (1 optimization; and (2 trial-and-error modeling approaches. Only slight differences between the transport parameters were observed between these approaches. Treating both the die-off rates and attachment/detachment rates as variables resulted in an overall better model fit, particularly for the tailing phase of the experiments. Independent of the fitting procedure, attachment rates computed by the model were higher in sandy and sandy loam soils than clay, which was attributed to unsaturated flow conditions at lower water content in the coarser-textured soils. Early breakthrough of the bacteria and virus indicated the presence of preferential flow in the system in the structured clay loam soil, resulting in faster movement of water and microbes through the soil relative to a conservative tracer (bromide.

Effects of electrokinetic treatment of a heavy metal contaminated soil on soil enzyme activities

International Nuclear Information System (INIS)

Cang Long; Zhou Dongmei; Wang Quanying; Wu Danya

2009-01-01

There is a growing concern on the potential application of a direct current (DC) electric field to soil for removing contaminants, but little is known about its impact on soil enzyme activities. This study investigated the change of enzyme activities of a heavy metal contaminated soil before and after electrokinetic (EK) treatments at lab-scale and the mechanisms of EK treatment to affect soil enzyme activities were explored. After treatments with 1-3 V cm -1 of voltage gradient for 420 h, soil pH, electrical conductivity (EC), soil organic carbon, dissolved organic carbon (DOC), soil heavy metal concentration and enzyme activities were analyzed. The results showed that the average removal efficiencies of soil copper were about 65% and 83% without and with pH control of catholyte, respectively, and all the removal efficiencies of cadmium were above 90%. The soil invertase and catalase activities increased and the highest invertase activity was as 170 times as the initial one. The activities of soil urease and acidic phosphatase were lower than the initial ones. Bivariate correlation analyses indicated that the soil invertase and acidic phosphatase activities were significantly correlated with soil pH, EC, and DOC at P < 0.05, but the soil urease activities had no correlation with the soil properties. On the other hand, the effects of DC electric current on solution invertase and catalase enzyme protein activities indicated that it had negative effect on solution catalase activity and little effect on solution invertase activity. From the change of invertase and catalase activities in soil and solution, the conclusion can be drawn that the dominant effect mechanism is the change of soil properties by EK treatments.

Effects of electrokinetic treatment of a heavy metal contaminated soil on soil enzyme activities

Energy Technology Data Exchange (ETDEWEB)

Cang Long [State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008 (China); Graduate School of the Chinese Academy of Sciences, Beijing 100049 (China); Zhou Dongmei, E-mail: dmzhou@issas.ac.cn [State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008 (China); Wang Quanying; Wu Danya [State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008 (China); Graduate School of the Chinese Academy of Sciences, Beijing 100049 (China)

2009-12-30

There is a growing concern on the potential application of a direct current (DC) electric field to soil for removing contaminants, but little is known about its impact on soil enzyme activities. This study investigated the change of enzyme activities of a heavy metal contaminated soil before and after electrokinetic (EK) treatments at lab-scale and the mechanisms of EK treatment to affect soil enzyme activities were explored. After treatments with 1-3 V cm{sup -1} of voltage gradient for 420 h, soil pH, electrical conductivity (EC), soil organic carbon, dissolved organic carbon (DOC), soil heavy metal concentration and enzyme activities were analyzed. The results showed that the average removal efficiencies of soil copper were about 65% and 83% without and with pH control of catholyte, respectively, and all the removal efficiencies of cadmium were above 90%. The soil invertase and catalase activities increased and the highest invertase activity was as 170 times as the initial one. The activities of soil urease and acidic phosphatase were lower than the initial ones. Bivariate correlation analyses indicated that the soil invertase and acidic phosphatase activities were significantly correlated with soil pH, EC, and DOC at P < 0.05, but the soil urease activities had no correlation with the soil properties. On the other hand, the effects of DC electric current on solution invertase and catalase enzyme protein activities indicated that it had negative effect on solution catalase activity and little effect on solution invertase activity. From the change of invertase and catalase activities in soil and solution, the conclusion can be drawn that the dominant effect mechanism is the change of soil properties by EK treatments.

Relation between Protein Intrinsic Normal Mode Weights and Pre-Existing Conformer Populations.

Science.gov (United States)

Ozgur, Beytullah; Ozdemir, E Sila; Gursoy, Attila; Keskin, Ozlem

2017-04-20

Intrinsic fluctuations of a protein enable it to sample a large repertoire of conformers including the open and closed forms. These distinct forms of the protein called conformational substates pre-exist together in equilibrium as an ensemble independent from its ligands. The role of ligand might be simply to alter the equilibrium toward the most appropriate form for binding. Normal mode analysis is proved to be useful in identifying the directions of conformational changes between substates. In this study, we demonstrate that the ratios of normalized weights of a few normal modes driving the protein between its substates can give insights about the ratios of kinetic conversion rates of the substates, although a direct relation between the eigenvalues and kinetic conversion rates or populations of each substate could not be observed. The correlation between the normalized mode weight ratios and the kinetic rate ratios is around 83% on a set of 11 non-enzyme proteins and around 59% on a set of 17 enzymes. The results are suggestive that mode motions carry intrinsic relations with thermodynamics and kinetics of the proteins.

Sources of dietary protein in relation to blood pressure in a general Dutch population.

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Wieke Altorf-van der Kuil

Full Text Available BACKGROUND: Little is known about the relation of different dietary protein types with blood pressure (BP. We examined whether intake of total, plant, animal, dairy, meat, and grain protein was related to BP in a cross sectional cohort of 20,820 Dutch adults, aged 20-65 y and not using antihypertensive medication. DESIGN: Mean BP levels were calculated in quintiles of energy-adjusted protein with adjustment for age, sex, BMI, education, smoking, and intake of energy, alcohol, and other nutrients including protein from other sources. In addition, mean BP difference after substitution of 3 en% carbohydrates or MUFA with protein was calculated. RESULTS: Total protein and animal protein were not associated with BP (p(trend = 0.62 and 0.71 respectively, both at the expense of carbohydrates and MUFA. Systolic BP was 1.8 mmHg lower (p(trend36 g/d than in the lowest (<27 g/d quintile of plant protein. This inverse association was present both at the expense of carbohydrates and MUFA and more pronounced in individuals with untreated hypertension (-3.6 mmHg than in those with normal (+0.1 mmHg or prehypertensive BP (-0.3 mmHg; p(interaction<0.01. Meat and grain protein were not related to BP. Dairy protein was directly associated with systolic BP (+1.6 mmHg, p(trend<0.01, but not with diastolic BP (p(trend = 0.24. CONCLUSIONS: Total protein and animal protein were not associated with BP in this general untreated Dutch population. Plant protein may be beneficial to BP, especially in people with elevated BP. However, because high intake of plant protein may be a marker of a healthy diet and lifestyle in general, confirmation from randomized controlled trials is warranted.

Soil washing results for mixed waste pond soils at Hanford

International Nuclear Information System (INIS)

Gerber, M.A.

1991-09-01

Soil washing technology was assessed as a means for remediating soil contaminated with mixed wastes primarily composed of heavy metals and radionuclides. The soils at the US Department of Energy's Hanford Site are considered suitable for soil washing because of their relatively low quantities of silt and clay. However, in a limited number of soil washing experiments using soils from different locations in the north pond of the 300 Area, the degree of decontamination achieved for the coarse fraction of the soil varied considerably. Part of this variation appears to be due to the presence of a discrete layer of contaminated sediment found in some of the samples. 7 refs., 2 figs., 4 tabs

Protein level affects the relative lysine requirement of growing rainbow trout (Oncorhynchus mykiss) fry.

Science.gov (United States)

Bodin, Noelie; Govaerts, Bernadette; Abboudi, Tarik; Detavernier, Christel; De Saeger, Sarah; Larondelle, Yvan; Rollin, Xavier

2009-07-01

The effect of two digestible protein levels (310 and 469 g/kg DM) on the relative lysine (Lys; g Lys/kg DM or g Lys/100 g protein) and the absolute Lys (g Lys intake/kg 0.75 per d) requirements was studied in rainbow trout fry using a dose-response trial. At each protein level, sixteen isoenergetic (22-23 MJ digestible energy/kg DM) diets were tested, involving a full range (2-70 g/kg DM) of sixteen Lys levels. Each diet was given to one group of sixty rainbow trout fry (mean initial body weight 0.78 g) reared at 15 degrees C for 31 feeding d. The Lys requirements were estimated based on the relationships between weight, protein, and Lys gains (g/kg 0.75 per d) and Lys concentration (g/kg DM or g/100 g protein) or Lys intake (g/kg 0.75 per d), using the broken-line model (BLM) and the non-linear four-parameter saturation kinetics model (SKM-4). Both the model and the response criterion chosen markedly impacted the relative Lys requirement. The relative Lys requirement for Lys gain of rainbow trout estimated with the BLM (and SKM-4 at 90 % of the maximum response) increased from 16.8 (19.6) g/kg DM at a low protein level to 23.4 (24.5) g/kg DM at a high protein level. However, the dietary protein content affected neither the absolute Lys requirement nor the relative Lys requirement expressed as g Lys/100 g protein nor the Lys requirement for maintenance (21 mg Lys/kg 0.75 per d).

Behavior of oxyfluorfen in soils amended with different sources of organic matter. Effects on soil biology.

Science.gov (United States)

Gómez, Isidoro; Rodríguez-Morgado, Bruno; Parrado, Juan; García, Carlos; Hernández, Teresa; Tejada, Manuel

2014-05-30

We performed a laboratory study on the effect of oxyfluorfen at a rate of 4lha(-1) on biological properties of a soil amended with four organic wastes (two biostimulants/biofertilizers, obtained from rice bran, RB1 and RB2; municipal solid waste, MSW; and sheep manure, SM). Soil was mixed with SM at a rate of 1%, MSW at a rate of 0.52%, RB1 at a rate of 0.39% and RB2 at a rate of 0.30%, in order to apply the same amount of organic matter to the soil. The enzymatic activities and microbial community in the soil were determined during the incubation times. The application of RB1 and RB2 to soil without oxyfluorfen increased the enzymatic activities and biodiversity, peaking at day 10 of the incubation period. This stimulation was higher in the soil amended with RB2 than in that amended with RB1. In SM and CF-amended soils, the stimulation of enzymatic activities and soil biodiversity increased during the experiment. The application of herbicide in organic-amended soils decreased the inhibition of soil enzymatic activities and soil biodiversity. Possibly the low molecular weight protein content easily assimilated by soil microorganisms and the higher fat content in the biostimulants/biofertilizers are responsible for the lower inhibition of these soil biological properties. Copyright © 2014 Elsevier B.V. All rights reserved.

July: "Soils are living: Overview of soil biodiversity, global issues, and new resources"

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The July poster will provide an overview of soil biology and the many ecosystem functions that soil organisms drive including their impact on global biodiversity, climate regulation, soil health/stability, and plant growth. Five main global issues related to soil biodiversity will be presented such ...

Soil manganese redox cycling in suboxic zones: Effects on soil carbon stability

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Suboxic soil environments contain a disproportionately higher concentration of highly reactive free radicals relative to the surrounding soil matrix, which may have significant implications for soil organic matter cycling and stabilization. This study investigated how Mn-ozidizin...