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Sample records for glomalin-related soil protein

  1. Long-term manure amendments reduced soil aggregate stability via redistribution of the glomalin-related soil protein in macroaggregates

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    Xie, Hongtu; Li, Jianwei; Zhang, Bin; Wang, Lianfeng; Wang, Jingkuan; He, Hongbo; Zhang, Xudong

    2015-01-01

    Glomalin-related soil protein (GRSP) contributes to the formation and maintenance of soil aggregates, it is however remains unclear whether long-term intensive manure amendments alter soil aggregates stability and whether GRSP regulates these changes. Based on a three-decade long fertilization experiment in northeast China, this study examined the impact of long-term manure input on soil organic carbon (SOC), total and easily extractable GRSP (GRSPt and GRSPe) and their respective allocations in four soil aggregates (>2000 μm; 2000–250 μm; 250–53 μm; and soil and SOC in each aggregate generally increased with increasing manure input, GRSPt and GRSPe in each aggregate showed varying changes with manure input. Both GRSP in macroaggregates (2000–250 μm) were significantly higher under low manure input, a pattern consistent with changes in soil aggregate stability. Constituting 38~49% of soil mass, macroaggregates likely contributed to the nonlinear changes of aggregate stability under manure amendments. The regulatory process of GRSP allocations in soil aggregates has important implications for manure management under intensive agriculture. PMID:26423355

  2. Distribution of chromium species in a Cr-polluted soil: presence of Cr(III) in glomalin related protein fraction.

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    Gil-Cardeza, María L; Ferri, Alejandro; Cornejo, Pablo; Gomez, Elena

    2014-09-15

    The accumulation of Cr in soil could be highly toxic to human health; therefore Cr soil distribution was studied in rhizosphere soils from Ricinus communis and Conium maculatum and bare soil (BS) from an industrial and urban area in Argentina. Total Cr, Cr(VI) and Cr(III) concentrations were determined in 3 soil fractions: total, extractable and associated to total-glomalin-related protein (T-GRSP). BS had the highest total Cr and total Cr(VI) concentrations. Total Cr(VI) concentration from both rhizosphere soils did not differ from the allowed value for residential area in Argentina (8 μg Cr(VI) g(-1) soil), while total Cr(VI) in BS was 1.8 times higher. Total Cr concentration in all the soils was higher than the allowed value (250 μg Cr g(-1) soil). Extractable and associated to T-GRSP Cr(VI) concentrations were below the detection limit. Cr(III) bound to T-GRSP was the highest in the BS. These findings are in agreement with a long term effect of glomalin in sequestrating Cr. In both plant species, total Cr was higher in root than in shoot and both species presented arbuscular mycorrhizal fungi (AMF). As far as we know, this is the first study that reports the presence of Cr in T-GRSP fraction of soil organic matter. These findings suggest that Cr mycorrhizostabilization could be a predominant mechanism used by R. communis and C. maculatum to diminish Cr soil concentration. Nevertheless, further research is needed to clarify the contribution of native AMF isolated from R. communis and C. maculatum rhizosphere to the Cr phytoremediation process. Copyright © 2014 Elsevier B.V. All rights reserved.

  3. Terrestrially derived glomalin-related soil protein quality as a potential ecological indicator in a peri-urban watershed.

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    Sui, Xueyan; Wu, Zhipeng; Lin, Chen; Zhou, Shenglu

    2017-07-01

    Glomalin, which sequesters substantial amounts of carbon, plays a critical role in sustaining terrestrial biome functions and contributes to the fate of many pollutants from terrestrial to aquatic ecosystems. Despite having focused on the amount of glomalin produced, very few attempts have been made to understand how landscapes and environmental conditions influence glomalin composition and characteristics. This study focused on glomalin-related soil protein (GRSP) exported as storm runoff including eroded sediment and water that was collected before flowing to surface waters in a peri-urban watershed. GRSP characteristics were assessed by Bradford protein analysis, fluorescence spectroscopy combined with parallel factor analysis (PARAFAC), and the determination of aromaticity based on the specific ultraviolet absorption value (280 nm) and molecular weight. General linear models (GLMs) was established by integrating microbial activity, land cover, water temperature, precipitation, and other solution chemical properties to explain the variations in GRSP characteristics. Results showed that a higher GRSP concentration in agricultural reference sites was produced in the form of specific materials with low molecular weight and aromaticity, as well as high percentage of C1 and C5 components which indicate microbial-processed sources, relative to urbanized and forested sites. Compared with forested land, urbanized land clearly produced runoff GRSP with low molecular weight and aromaticity, as well as more degradation of humic-like materials (C3 component). The highest GLM explaining 89% of the variables, including significant variables (p watershed management and thus protecting aquatic ecosystems.

  4. Root colonization with arbuscular mycorrhizal fungi and glomalin-related soil protein (GRSP concentration in hypoxic soils in natural CO2 springs

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    Irena Maček

    2012-03-01

    Full Text Available Changed ratios of soil gases that lead to hypoxia are most often present in waterlogged soils, but can also appear in soils not saturated with water. In natural CO2 springs (mofettes, gases in soil air differ from those in typical soils. In this study, plant roots from the mofette area Stavešinci (Slovenia were sampled in a spatial scale and investigated for AM fungal colonization. AM fungi were found in roots from areas with high geological CO2 concentration, however mycorrhizal intensity was relatively low and no correlation between AM fungal colonization and soil pattern of CO2/O2 concentrations (up to 37% CO2 was found. The relatively high abundance of arbuscules in root cortex indicated existence of functional symbiosis at much higher CO2 concentrations than normally found in soils. In addition, concentration of two different glomalin-related soil protein fractions – EE-GRSP and TG-GRSP – was measured. No significant correlation between any of the fractions and soil gases was found, however the concentration of both fractions was significantly higher in the upper 0–5 cm, compared to the 5–10 cm layer of the soil.

  5. Elevated CO2 increases glomalin-related soil protein (GRSP) in the rhizosphere of Robinia pseudoacacia L. seedlings in Pb- and Cd-contaminated soils.

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    Jia, Xia; Zhao, Yonghua; Liu, Tuo; Huang, Shuping; Chang, Yafei

    2016-11-01

    Glomalin-related soil protein (GRSP), which contains glycoproteins produced by arbuscular mycorrhizal fungi (AMF), as well as non-mycorrhizal-related heat-stable proteins, lipids, and humic materials, is generally categorized into two fractions: easily extractable GRSP (EE-GRSP) and total GRSP (T-GRSP). GRSP plays an important role in soil carbon (C) sequestration and can stabilize heavy metals such as lead (Pb), cadmium (Cd), and manganese (Mn). Soil contamination by heavy metals is occurring in conjunction with rising atmospheric CO 2 in natural ecosystems due to human activities. However, the response of GRSP to elevated CO 2 combined with heavy metal contamination has not been widely reported. Here, we investigated the response of GRSP to elevated CO 2 in the rhizosphere of Robinia pseudoacacia L. seedlings in Pb- and Cd-contaminated soils. Elevated CO 2 (700 μmol mol -1 ) significantly increased T- and EE- GRSP concentrations in soils contaminated with Cd, Pb or Cd + Pb. GRSP contributed more carbon to the rhizosphere soil organic carbon pool under elevated CO 2  + heavy metals than under ambient CO 2 . The amount of Cd and Pb bound to GRSP was significantly higher under elevated (compared to ambient) CO 2 ; and elevated CO 2 increased the ratio of GRSP-bound Cd and Pb to total Cd and Pb. However, available Cd and Pb in rhizosphere soil under increased elevated CO 2 compared to ambient CO 2 . The combination of both metals and elevated CO 2 led to a significant increase in available Pb in rhizosphere soil compared to the Pb treatment alone. In conclusion, increased GRSP produced under elevated CO 2 could contribute to sequestration of soil pollutants by adsorption of Cd and Pb. Copyright © 2016 Elsevier Ltd. All rights reserved.

  6. The effects of arbuscular mycorrhizal fungi on glomalin-related soil protein distribution, aggregate stability and their relationships with soil properties at different soil depths in lead-zinc contaminated area.

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    Yurong Yang

    Full Text Available Glomalin-related soil protein (GRSP, a widespread glycoprotein produced by arbuscular mycorrhizal fungi (AMF, is crucial for ecosystem functioning and ecological restoration. In the present study, an investigation was conducted to comprehensively analyze the effects of heavy metal (HM contamination on AMF status, soil properties, aggregate distribution and stability, and their correlations at different soil depths (0-10, 10-20, 20-30, 30-40 cm. Our results showed that the mycorrhizal colonization (MC, hyphal length density (HLD, GRSP, soil organic matter (SOM and soil organic carbon (SOC were significantly inhibited by Pb compared to Zn at 0-20 cm soil depth, indicating that HM had significant inhibitory effects on AMF growth and soil properties, and that Pb exhibited greater toxicity than Zn at shallow layer of soil. Both the proportion of soil large macroaggregates (>2000 μm and mean weight diameter (MWD were positively correlated with GRSP, SOM and SOC at 0-20 cm soil depth (P < 0.05, proving the important contributions of GRSP, SOM and SOC for binding soil particles together into large macroaggregates and improving aggregate stability. Furthermore, MC and HLD had significantly positive correlation with GRSP, SOM and SOC, suggesting that AMF played an essential role in GRSP, SOM and SOC accumulation and subsequently influencing aggregate formation and particle-size distribution in HM polluted soils. Our study highlighted that the introduction of indigenous plant associated with AMF might be a successful biotechnological tool to assist the recovery of HM polluted soils, and that proper management practices should be developed to guarantee maximum benefits from plant-AMF symbiosis during ecological restoration.

  7. The effects of arbuscular mycorrhizal fungi on glomalin-related soil protein distribution, aggregate stability and their relationships with soil properties at different soil depths in lead-zinc contaminated area.

    Science.gov (United States)

    Yang, Yurong; He, Chuangjun; Huang, Li; Ban, Yihui; Tang, Ming

    2017-01-01

    Glomalin-related soil protein (GRSP), a widespread glycoprotein produced by arbuscular mycorrhizal fungi (AMF), is crucial for ecosystem functioning and ecological restoration. In the present study, an investigation was conducted to comprehensively analyze the effects of heavy metal (HM) contamination on AMF status, soil properties, aggregate distribution and stability, and their correlations at different soil depths (0-10, 10-20, 20-30, 30-40 cm). Our results showed that the mycorrhizal colonization (MC), hyphal length density (HLD), GRSP, soil organic matter (SOM) and soil organic carbon (SOC) were significantly inhibited by Pb compared to Zn at 0-20 cm soil depth, indicating that HM had significant inhibitory effects on AMF growth and soil properties, and that Pb exhibited greater toxicity than Zn at shallow layer of soil. Both the proportion of soil large macroaggregates (>2000 μm) and mean weight diameter (MWD) were positively correlated with GRSP, SOM and SOC at 0-20 cm soil depth (P soil particles together into large macroaggregates and improving aggregate stability. Furthermore, MC and HLD had significantly positive correlation with GRSP, SOM and SOC, suggesting that AMF played an essential role in GRSP, SOM and SOC accumulation and subsequently influencing aggregate formation and particle-size distribution in HM polluted soils. Our study highlighted that the introduction of indigenous plant associated with AMF might be a successful biotechnological tool to assist the recovery of HM polluted soils, and that proper management practices should be developed to guarantee maximum benefits from plant-AMF symbiosis during ecological restoration.

  8. Spatio-temporal dynamics of arbuscular mycorrhizal fungi associated with glomalin-related soil protein and soil enzymes in different managed semiarid steppes.

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    Wang, Qi; Bao, Yuying; Liu, Xiaowei; Du, Guoxin

    2014-10-01

    Temporal and spatial patterns of arbuscular mycorrhizal fungi (AMF) and glomalin and soil enzyme activities were investigated in different managed semiarid steppes located in Inner Mongolia, North China. Soils were sampled in a depth up to 30 cm from non-grazed, overgrazed, and naturally restored steppes from June to September. Roots of Leymus chinense (Trin.) Tzvel. and Stipagrandis P. Smirn. were also collected over the same period. Results showed that overgrazing significantly decreased the total mycorrhizal colonization of S. grandis; total colonization of L. chinensis roots was not significantly different in the three managed steppes. Nineteen AMF species belonging to six genera were isolated. Funneliformis and Glomus were dominant genera in all three steppes. Spore density and species richness were mainly influenced by an interaction between plant growth stage and management system (P soil depth. AMF species richness was significantly positively correlated with soil acid phosphatase activity, alkaline phosphatase activity, and two Bradford-reactive soil protein (BRSP) fractions (P soil glomalin and phosphatase activity in different managed semiarid steppes. Based on these observations, AMF communities could be useful indicators for evaluating soil quality and function of semiarid grassland ecosystems.

  9. Arbuscular mycorrhizal fungi enhance soil carbon sequestration in the coalfields, northwest China

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    Wang, Zhi-Gang; Bi, Yin-Li; Jiang, Bin; Zhakypbek, Yryszhan; Peng, Su-Ping; Liu, Wen-Wen; Liu, Hao

    2016-10-01

    Carbon storage is affected by photosynthesis (Pn) and soil respiration (Rs), which have been studied extensively in natural and agricultural systems. However, the effects of Pn and Rs on carbon storages in the presence of arbuscular mycorrhizal fungi (AMF) in coalfields remain unclear. A field experiment was established in 2014 in Shendong coal mining subsidence area. The treatments comprised two inoculation levels (inoculated with or without 100 g AMF inoculums per seedlings) and four plant species [wild cherry (Prunus discadenia Koebne L.), cerasus humilis (Prunus dictyneura Diels L.), shiny leaf Yellow horn (Xanthoceras sorbifolium Bunge L.) and apricot (Armeniaca sibirica L.)]. AMF increased Pn of four species ranging from 15.3% to 33.1% and carbon storage, averaged by 17.2% compared to controls. Soil organic carbon (OC), easily extractable glomalin-relation soil protein (EE-GRSP), and total glomalin-relation soil protein (T-GRSP) were significantly increased by AMF treatment. The effect of AMF on the sensitivity of Rs depended on soil temperature. The results highlighted the exponential models to explain the responses of Rs to soil temperature, and for the first time quantified AMF caused carbon sequestration and Rs. Thus, to our knowledge, AMF is beneficial to ecosystems through facilitating carbon conservation in coalfield soils.

  10. Heavy metals in soils: a possible rule of Fungi

    International Nuclear Information System (INIS)

    Bedini, S.; Argese, E.; Giovannetti, M.; Gobbo, L.; Pietrangeli, B.

    2009-01-01

    The development of effective bio technologies is a mail goal in reclaiming polluted soils. Plants may represent a very useful tool, since they are able to reduce pollution by means of the synergic action of rhizospheric microorganisms. Arbuscular mycorrhizal (A M) fungi, root symbionts of most land plants, produce a proteinaceous substance named glomalin-related soil protein (GRSP) that has been demonstrated to interact with metallic ions. In this study we investigated the role of GRSP in the immobilization of potentially toxic heavy metals both in an agricultural and in a highly polluted soil. The results show that in heavy metal contaminated soils, GRSP can ease soil pollution by sequestering toxic metallic ions. On the other hand, in agricultural soils, where metallic elements are present in low concentrations, GRSP may be important also as a nutrient slow-releasing fraction of the soil organic matter.

  11. Seasonal Patterns of Soil Respiration and Related Soil Biochemical Properties under Nitrogen Addition in Winter Wheat Field

    Science.gov (United States)

    Liang, Guopeng; Houssou, Albert A.; Wu, Huijun; Cai, Dianxiong; Wu, Xueping; Gao, Lili; Li, Jing; Wang, Bisheng; Li, Shengping

    2015-01-01

    Understanding the changes of soil respiration under increasing N fertilizer in cropland ecosystems is crucial to accurately predicting global warming. This study explored seasonal variations of soil respiration and its controlling biochemical properties under a gradient of Nitrogen addition during two consecutive winter wheat growing seasons (2013–2015). N was applied at four different levels: 0, 120, 180 and 240 kg N ha-1 year-1 (denoted as N0, N12, N18 and N24, respectively). Soil respiration exhibited significant seasonal variation and was significantly affected by soil temperature with Q10 ranging from 2.04 to 2.46 and from 1.49 to 1.53 during 2013–2014 and 2014–2015 winter wheat growing season, respectively. Soil moisture had no significant effect on soil respiration during 2013–2014 winter wheat growing season but showed a significant and negative correlation with soil respiration during 2014–2015 winter wheat growing season. Soil respiration under N24 treatment was significantly higher than N0 treatment. Averaged over the two growing seasons, N12, N18 and N24 significantly increased soil respiration by 13.4, 16.4 and 25.4% compared with N0, respectively. N addition also significantly increased easily extractable glomalin-related soil protein (EEG), soil organic carbon (SOC), total N, ammonium N and nitrate N contents. In addition, soil respiration was significantly and positively correlated with β-glucosidase activity, EEG, SOC, total N, ammonium N and nitrate N contents. The results indicated that high N fertilization improved soil chemical properties, but significantly increased soil respiration. PMID:26629695

  12. Seasonal Patterns of Soil Respiration and Related Soil Biochemical Properties under Nitrogen Addition in Winter Wheat Field.

    Science.gov (United States)

    Liang, Guopeng; Houssou, Albert A; Wu, Huijun; Cai, Dianxiong; Wu, Xueping; Gao, Lili; Li, Jing; Wang, Bisheng; Li, Shengping

    2015-01-01

    Understanding the changes of soil respiration under increasing N fertilizer in cropland ecosystems is crucial to accurately predicting global warming. This study explored seasonal variations of soil respiration and its controlling biochemical properties under a gradient of Nitrogen addition during two consecutive winter wheat growing seasons (2013-2015). N was applied at four different levels: 0, 120, 180 and 240 kg N ha(-1) year(-1) (denoted as N0, N12, N18 and N24, respectively). Soil respiration exhibited significant seasonal variation and was significantly affected by soil temperature with Q10 ranging from 2.04 to 2.46 and from 1.49 to 1.53 during 2013-2014 and 2014-2015 winter wheat growing season, respectively. Soil moisture had no significant effect on soil respiration during 2013-2014 winter wheat growing season but showed a significant and negative correlation with soil respiration during 2014-2015 winter wheat growing season. Soil respiration under N24 treatment was significantly higher than N0 treatment. Averaged over the two growing seasons, N12, N18 and N24 significantly increased soil respiration by 13.4, 16.4 and 25.4% compared with N0, respectively. N addition also significantly increased easily extractable glomalin-related soil protein (EEG), soil organic carbon (SOC), total N, ammonium N and nitrate N contents. In addition, soil respiration was significantly and positively correlated with β-glucosidase activity, EEG, SOC, total N, ammonium N and nitrate N contents. The results indicated that high N fertilization improved soil chemical properties, but significantly increased soil respiration.

  13. Symbiosis of Arbuscular Mycorrhizal Fungi and Robinia pseudoacacia L. Improves Root Tensile Strength and Soil Aggregate Stability.

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    Zhang, Haoqiang; Liu, Zhenkun; Chen, Hui; Tang, Ming

    2016-01-01

    Robinia pseudoacacia L. (black locust) is a widely planted tree species on Loess Plateau for revegetation. Due to its symbiosis forming capability with arbuscular mycorrhizal (AM) fungi, we explored the influence of arbuscular mycorrhizal fungi on plant biomass, root morphology, root tensile strength and soil aggregate stability in a pot experiment. We inoculated R. pseudoacacia with/without AM fungus (Rhizophagus irregularis or Glomus versiforme), and measured root colonization, plant growth, root morphological characters, root tensile force and tensile strength, and parameters for soil aggregate stability at twelve weeks after inoculation. AM fungi colonized more than 70% plant root, significantly improved plant growth. Meanwhile, AM fungi elevated root morphological parameters, root tensile force, root tensile strength, Glomalin-related soil protein (GRSP) content in soil, and parameters for soil aggregate stability such as water stable aggregate (WSA), mean weight diameter (MWD) and geometric mean diameter (GMD). Root length was highly correlated with WSA, MWD and GMD, while hyphae length was highly correlated with GRSP content. The improved R. pseudoacacia growth, root tensile strength and soil aggregate stability indicated that AM fungi could accelerate soil fixation and stabilization with R. pseudoacacia, and its function in revegetation on Loess Plateau deserves more attention.

  14. Contribution of arbuscular mycorrhizal fungi of sedges to soil aggregation along an altitudinal alpine grassland gradient on the Tibetan Plateau.

    Science.gov (United States)

    Li, Xiaoliang; Zhang, Junling; Gai, Jingping; Cai, Xiaobu; Christie, Peter; Li, Xiaolin

    2015-08-01

    The diversity of arbuscular mycorrhizal fungi (AMF) in sedges on the Tibetan Plateau remains largely unexplored, and their contribution to soil aggregation can be important in understanding the ecological function of AMF in alpine ecosystems. Roots of Kobresia pygmaea C.B. Clarke and Carex pseudofoetida Kük. in alpine Kobresia pastures along an elevational transect (4149-5033 m) on Mount Mila were analysed for AMF diversity. A structural equation model was built to explore the contribution of biotic factors to soil aggregation. Sedges harboured abundant AMF communities covering seven families and some operational taxonomic units are habitat specific. The two plant species hosted similar AMF communities at most altitudes. The relative abundance of the two sedges contributed largely to soil macroaggregates, followed by extraradical mycorrhizal hyphae (EMH) and total glomalin-related soil protein (T-GRSP). The influence of plant richness was mainly due to its indirect influence on T-GRSP and EMH. There was a strong positive correlation between GRSP and soil total carbon and nitrogen. Our results indicate that mycorrhization might not be a major trait leading to niche differentiation of the two co-occurring sedge species. However, AMF contribute to soil aggregation and thus may have the potential to greatly influence C and N cycling in alpine grasslands. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

  15. EFFECT OF CROP ROTATION AND LONG TERM FERTILIZATION ON THE CARBON AND GLOMALIN CONTENT IN THE SOIL

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    Piotr WOJEWÓDZKI

    2012-12-01

    Full Text Available The research was performed on the basis of soil samples taken from a multi-year long fertilization experiment carried out in Skierniewice. The source of samples was soil under potato and rye cultivated in monoculture and in the 5-fields rotation system. The following combinations of fertilization were concerned: Ca, NPK and CaNPK (doses since 1976: 1.6 t·ha-1 CaO every 4 years in monoculture and 2 t·ha-1 CaO every 5 years in crop rotation, 90 kg·ha-1 N, 26 kg·ha-1 P, 91 kg·ha-1 K. Laboratory analyzes involved determination of total organic carbon (TOC and glomalin operationally described as a total glomalin related soil protein (TGRSP. It was found that regardless of cultivated plants and the method of fertilization, only cultivation system such as rotation and monoculture significantly influenced the content of TGRSP. TOC was significantly influenced by interaction between species of cultivated plant and the system of cultivation. The analyzed factors within the method of cultivation (monoculture and crop rotation did not influence significantly the TGRSP content while cultivated plant species, in monoculture, significantly influenced on TOC content. There was also noted positive correlation (r = 0.72 between TGRSP and TOC.

  16. Role and Variation of the Amount and Composition of Glomalin in Soil Properties in Farmland and Adjacent Plantations with Reference to a Primary Forest in North-Eastern China.

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    Qiong Wang

    Full Text Available The glycoprotein known as glomalin-related soil protein (GRSP is abundantly produced on the hyphae and spores of arbuscular mycorrhizal fungi (AMF in soil and roots. Few studies have focused on its amount, composition and associations with soil properties and possible land-use influences, although the data hints at soil rehabilitation. By choosing a primary forest soil as a non-degraded reference, it is possible to explore whether afforestation can improve degraded farmland soil by altering GRSP. In this paper, close correlations were found between various soil properties (soil organic carbon, nitrogen, pH, electrical conductivity (EC, and bulk density and the GRSP amount, between various soil properties and GRSP composition (main functional groups, fluorescent substances, and elements. Afforestation on farmland decreased the EC and bulk density (p < 0.05. The primary forest had a 2.35-2.56-fold higher GRSP amount than those in the plantation forest and farmland, and GRSP composition (tryptophan-like and fulvic acid-like fluorescence; functional groups of C-H, C-O, and O-H; elements of Al, O, Si, C, Ca, and N in primary forest differed from those in plantation forest and farmland (p < 0.05. However, no evident differences in GRSP amount and composition were observed between the farmland and the plantation forest. Our finding highlights that 30 years poplar afforestation on degraded farmland is not enough to change GRSP-related properties. A longer period of afforestation with close-to-nature managements may favor the AMF-related underground recovery processes.

  17. Disruption of mycorrhizal extraradical mycelium and changes in leaf water status and soil aggregate stability in rootbox-grown trifoliate orange

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    Ying-Ning eZou

    2015-03-01

    Full Text Available Arbuscular mycorrhizas possess well developed extraradical mycelium (ERM network that enlarge the surrounding soil for better acquisition of water and nutrients, besides soil aggregation. Distinction in ERM functioning was studied under a rootbox system, which consisted of root+hyphae and root-free hyphae compartments separated by 37-μm nylon mesh with an air gap. Trifoliate orange (Poncirus trifoliata seedlings were inoculated with Funneliformis mosseae in root+hyphae compartment, and the ERM network was established between the two compartments. The ERM network of air gap was disrupted before 8 h of the harvest (one time disruption or multiple disruptions during seedlings acclimation. Our results showed that mycorrhizal inoculation induced a significant increase in growth (plant height, stem diameter, and leaf, stem, and root biomass and physiological characters (leaf relative water content, leaf water potential, and transpiration rate, irrespective of ERM status. Easily-extractable glomalin-related soil protein (EE-GRSP and total GRSP (T-GRSP concentration and mean weight diameter (MWD, an indicator of soil aggregate stability were significantly higher in mycorrhizosphere of root+hyphae and root-free hyphae compartments than non-mycorrhizosphere. One time disruption of ERM network did not influence plant growth and soil properties but only notably decreased leaf water. Periodical disruption of ERM network at weekly interval markedly inhibited the mycorrhizal roles on plant growth, leaf water, GRSP production, and MWD in root+hyphae and hyphae chambers. EE-GRSP was the most responsive GRSP fraction to changes in leaf water and MWD under root+hyphae and hyphae conditions. It suggests that effect of peridical disruption of ERM network was more impactful than one-time disruption of ERM network with regard to leaf water, plant growth, and aggregate stability responses, thereby, implying ERM network aided in developing the host plant metabolically

  18. Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

    Energy Technology Data Exchange (ETDEWEB)

    Chourey, Karuna [ORNL; Jansson, Janet [Lawrence Berkeley National Laboratory (LBNL); Verberkmoes, Nathan C [ORNL; Shah, Manesh B [ORNL; Chavarria, Krystle L. [Lawrence Berkeley National Laboratory (LBNL); Tom, Lauren M [Lawrence Berkeley National Laboratory (LBNL); Brodie, Eoin L. [Lawrence Berkeley National Laboratory (LBNL); Hettich, Robert {Bob} L [ORNL

    2010-01-01

    We present a novel direct protocol for deep proteome characterization of microorganisms in soil. The method employs thermally assisted detergent-based cellular lysis (SDS) of soil samples, followed by TCA precipitation for proteome extraction/cleanup prior to liquid chromatography-mass spectrometric characterization. This approach was developed and optimized using different soils inoculated with genome-sequenced bacteria (Gram-negative Pseudomonas putida or Gram-positive Arthrobacter chlorophenolicus). Direct soil protein extraction was compared to protein extraction from cells isolated from the soil matrix prior to lysis (indirect method). Each approach resulted in identification of greater than 500 unique proteins, with a wide range in molecular mass and functional categories. To our knowledge, this SDS-TCA approach enables the deepest proteome characterizations of microbes in soil to date, without significant biases in protein size, localization, or functional category compared to pure cultures. This protocol should provide a powerful tool for ecological studies of soil microbial communities.

  19. Soil Microbes and soil microbial proteins: interactions with clay minerals

    International Nuclear Information System (INIS)

    Spence, A.; Kelleher, B. P.

    2009-01-01

    Bacterial enumeration in soil environments estimates that the population may reach approximately 10 1 0 g - 1 of soil and comprise up to 90% of the total soil microbial biomass. Bacteria are present in soils as single cells or multicell colonies and often strongly adsorb onto mineral surfaces such as sand and clay. The interactions of microbes and microbial biomolecules with these minerals have profound impacts on the physical, chemical and biological properties of soils. (Author)

  20. Glomalin in a mediterranean ecosystem affected by mining activities and its contribution to heavy metals sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Cornejo, P.; Meier, F.; Borie, G.; Borie, F.

    2009-07-01

    Glomalin-related soil protein (GRSP), a glycoprotein produced by arbuscular mycorrhizal fungi (AMF) and usually presents in high amounts in soil, may stabilize heavy metals such as Cu an Zn in soils affected by mining activities, as large areas of central Chile. (Author)

  1. Adsorption, desorption and biodegradation in soil of CrylAb toxin protein from Bt transgenic rice

    International Nuclear Information System (INIS)

    Wang Haiyan; Ye Qingfu

    2004-01-01

    The equilibrium adsorption and binding of CrylAb toxin from Bt transgenic rice, to 7 different soils and the biodegradation of the bound toxin were studied. The adsorption rate of Bt in soils improved with decreasing of the added Bt purified protein concentration. Adsorption rate (125 and 780 nm/ml) in powdery-muddy paddy soil, Fluvio-marine yellow loamy and Coastal saline soil were 24.85% and 40.81%, 9.1% and 31.67%, 12.47% and 30.75%, respectively. Desorption rate in the soils dropped with content of soil-absorbed protein decreased. Its adsorption ratio in powdery-muddy paddy soil was 12.95% and 5.88%, respectively. The relationship between adsorption amount and concentration of Bt purified protein in different soils was notably positive correlation (P 0 e -λt ); Half life of Bt protein in soils was among 15.2-97.6 d; Degradation of pruified Bt protein was rapid at the initial incubation time (30 d), but slow at 150d incubation; The degradation of purified Bt protein in Intertidal sandy soil was the slowest with half-life of 97.6d. The protein in the soil amended with 1.25 μg/g could be still detectable after incubation of 345d; the degradation of purified Bt protein in Coastal saline soil and Aquic light saline sandy soil were faster. Their half-lives were 19.6 d and 15.2 d, respecitvely. The residue time of Bt purified protein in the soils was all more than 150 d. (authors)

  2. Cry1Ab protein from Bt transgenic rice does not residue in rhizosphere soil

    International Nuclear Information System (INIS)

    Wang Haiyan; Ye Qingfu; Wang Wei; Wu Licheng; Wu Weixiang

    2006-01-01

    Expression of Cry1Ab protein in Bt transgenic rice (KMD) and its residue in the rhizosphere soil during the whole growth in field, as well as degradation of the protein from KMD straw in five soils under laboratory incubation were studied. The residue of Cry1Ab protein in KMD rhizosphere soil was undetectable (below the limit of 0.5 ng/g air-dried soil). The Cry1Ab protein contents in the shoot and root of KMD were 3.23-8.22 and 0.68-0.89 μg/g (fresh weight), respectively. The half-lives of the Cry1Ab protein in the soils amended with KMD straw (4%, w/w) ranged from 11.5 to 34.3 d. The residence time of the protein varied significantly in a Fluvio-marine yellow loamy soil amended with KMD straw at the rate of 3, 4 and 7%, with half-lives of 9.9, 13.8 and 18 d, respectively. In addition, an extraction method for Cry1Ab protein in soil was developed, with extraction efficiencies of 46.4-82.3%. - Cry1Ab protein was not detected in the rhizosphere soil of field-grown Bt transgenic rice

  3. Persistence of detectable insecticidal proteins from Bacillus thuringiensis (Cry) and toxicity after adsorption on contrasting soils

    International Nuclear Information System (INIS)

    Hung, T.P.; Truong, L.V.; Binh, N.D.; Frutos, R.; Quiquampoix, H.; Staunton, S.

    2016-01-01

    Insecticidal Cry, or Bt, proteins are produced by the soil-endemic bacterium, Bacillus thuringiensis and some genetically modified crops. Their environmental fate depends on interactions with soil. Little is known about the toxicity of adsorbed proteins and the change in toxicity over time. We incubated Cry1Ac and Cry2A in contrasting soils subjected to different treatments to inhibit microbial activity. The toxin was chemically extracted and immunoassayed. Manduca sexta was the target insect for biotests. Extractable toxin decreased during incubation for up to four weeks. Toxicity of Cry1Ac was maintained in the adsorbed state, but lost after 2 weeks incubation at 25 °C. The decline in extractable protein and toxicity were much slower at 4 °C with no significant effect of soil sterilization. The major driving force for decline may be time-dependent fixation of adsorbed protein, leading to a decrease in the extraction yield in vitro, paralleled by decreasing solubilisation in the larval gut. - Graphical abstract: Biotest, presenting Cry-contaminated feed to Manduca sexta larvae in individual Perspex boxes. Display Omitted - Highlights: • Toxicity of Cry protein is initially conserved after adsorption on soil. • Toxicity and extractability decline with time, more rapidly at 25 °C than 4 °C. • Similar dynamics of Cry1AC and Cry2A on soil with varying texture and organic C. • Sterilization of soil does not change Cry dynamics or temperature effect in soil. • Cry decline is determined by progressive fixation on soil not microbial breakdown. - Toxicity was initially maintained after adsorption on soil and both extractable Cry and toxicity declined rapidly, more slowly at low temperature, due to different fixation dynamics. Toxicity of Cry protein is initially conserved after adsorption on soil.

  4. Temperature effects on protein depolymerization and amino acid immobilization rates in soils.

    Science.gov (United States)

    Noll, Lisa; Hu, Yuntao; Zhang, Shasha; Zheng, Qing; Wanek, Wolfgang

    2017-04-01

    Increasing N deposition, land use change, elevated atmospheric CO2 concentrations and global warming have altered soil nitrogen (N) cycling during the last decades. Those changes affected ecosystem services, such as C and N sequestration in soils, which calls for a better understanding of soil N transformation processes. The cleavage of macromolecular organic N by extracellular enzymes maintains an ongoing flow of new bioavailable organic N into biotic systems and is considered to be the bottle neck of terrestrial N cycling in litter and soils. Recent studies showed that protein depolymerization is susceptible to changes in C and N availabilities. Based on general biological observations the temperature sensitivity of soil organic N processes is expected to depend on whether they are rather enzyme limited (i.e. Q10=2) or diffusion limited (i.e. Q10= 1.0 - 1.3). However, temperature sensitivities of protein depolymerization and amino acid immobilization are still unknown. We therefore here report short-term temperature effects on organic N transformation rates in soils differing in physicochemical parameters but not in climate. Soil samples were collected from two geologically distinct sites close to the LFZ Raumberg-Gumpenstein, Styria, Austria, each from three different management types (arable land, grassland, forest). Four replicates of mineral soil were taken from every site and management type. The area provides a unique opportunity to study geological and management controls in soils without confounding effects of climate and elevation. The soils differ in several soil chemical parameters, such as soil pH, base saturation, soil C: N ratio and SOM content as well as in soil physical parameters, such as soil texture, bulk density and water holding capacity. Soils were pre-incubated at 5, 15 and 25˚ C for one day. Protein depolymerization rates and amino acid immobilization rates were assessed by an isotope pool dilution assay with 15N labeled amino acids at

  5. A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts

    OpenAIRE

    Redmile-Gordon, M.A.; Armenise, E.; White, R.P.; Hirsch, P.R.; Goulding, K.W.T.

    2013-01-01

    Soil extracts usually contain large quantities of dissolved humified organic material, typically reflected by high polyphenolic content. Since polyphenols seriously confound quantification of extracted protein, minimising this interference is important to ensure measurements are representative. Although the Bradford colorimetric assay is used routinely in soil science for rapid quantification protein in soil-extracts, it has several limitations. We therefore investigated an alternative colori...

  6. Influence of the Amino Acid Sequence on Protein-Mineral Interactions in Soil

    Science.gov (United States)

    Chacon, S. S.; Reardon, P. N.; Purvine, S.; Lipton, M. S.; Washton, N.; Kleber, M.

    2017-12-01

    The intimate associations between protein and mineral surfaces have profound impacts on nutrient cycling in soil. Proteins are an important source of organic C and N, and a subset of proteins, extracellular enzymes (EE), can catalyze the depolymerization of soil organic matter (SOM). Our goal was to determine how variation in the amino acid sequence could influence a protein's susceptibility to become chemically altered by mineral surfaces to infer the fate of adsorbed EE function in soil. We hypothesized that (1) addition of charged amino acids would enhance the adsorption onto oppositely charged mineral surfaces (2) addition of aromatic amino acids would increase adsorption onto zero charged surfaces (3) Increase adsorption of modified proteins would enhance their susceptibility to alterations by redox active minerals. To test these hypotheses, we generated three engineered proxies of a model protein Gb1 (IEP 4.0, 6.2 kDA) by inserting either negatively charged, positively charged or aromatic amino acids in the second loop. These modified proteins were allowed to interact with functionally different mineral surfaces (goethite, montmorillonite, kaolinite and birnessite) at pH 5 and 7. We used LC-MS/MS and solution-state Heteronuclear Single Quantum Coherence Spectroscopy NMR to observe modifications on engineered proteins as a consequence to mineral interactions. Preliminary results indicate that addition of any amino acids to a protein increase its susceptibility to fragmentation and oxidation by redox active mineral surfaces, and alter adsorption to the other mineral surfaces. This suggest that not all mineral surfaces in soil may act as sorbents for EEs and chemical modification of their structure should also be considered as an explanation for decrease in EE activity. Fragmentation of proteins by minerals can bypass the need to produce proteases, but microbial acquisition of other nutrients that require enzymes such as cellulases, ligninases or phosphatases

  7. Protein changes in Lepidium sativum L. exposed to Hg during soil phytoremediation.

    Science.gov (United States)

    Smolinska, Beata; Szczodrowska, Agnieszka; Leszczynska, Joanna

    2017-08-03

    Some investigations have been carried out in this study to find the best technique of soil reclamation in mercurypolluted soil. In this study, we examined Lepidium sativum L. as a plant useful for Hg phytoextraction. The simultaneous application of compost and thiosulfate was explored as a possible method of enhancing the process of phytoextraction. The results of the investigations of plant protein changes during assisted Hg phytoextraction were also provided. The results of the study show that combined use of compost and thiosulfate significantly increased both the total Hg accumulation and its translocation to aerial plant tissues. Plant protein analysis showed that L. sativum L. has the ability to respond to environmental stress condition by the activation of additional proteins. The additional proteins, like homocysteine methyltransferase, ribulose bisphosphate carboxylases (long and short chains), 14-3-3-like protein, and biosynthesis-related 40S ribosomal protein S15, were activated in plant shoots only in experiments carried out in Hg-polluted soil. There were no protein changes observed in plants exposed to compost and thiosulfate. It suggests that the combined use of compost and thiosulfate decreased Hg toxicity.

  8. Pathogenic prion protein is degraded by a manganese oxide mineral found in soils

    Science.gov (United States)

    Russo, F.; Johnson, C.J.; McKenzie, D.; Aiken, Judd M.; Pedersen, J.A.

    2009-01-01

    Prions, the aetiological agents of transmissible spongiform encephalopathies, exhibit extreme resistance to degradation. Soil can retain prion infectivity in the environment for years. Reactive soil components may, however, contribute to the inactivation of prions in soil. Members of the birnessite family of manganese oxides (MnO2) rank among the strongest natural oxidants in soils. Here, we report the abiotic degradation of pathogenic prion protein (PrPTSE) by a synthetic analogue of naturally occurring birnessite minerals. Aqueous MnO2 suspensions degraded the PrPTSE as evidenced by decreased immunoreactivity and diminished ability to seed protein misfolding cyclic amplification reactions. Birnessite-mediated PrPTSE degradation increased as a solution's pH decreased, consistent with the pH-dependence of the redox potential of MnO2. Exposure to 5.6 mg MnO2 ml-1 (PrPTSE:MnO2=1 : 110) decreased PrPTSE levels by ???4 orders of magnitude. Manganese oxides may contribute to prion degradation in soil environments rich in these minerals. ?? 2009 SGM.

  9. Soils

    Science.gov (United States)

    Emily Moghaddas; Ken Hubbert

    2014-01-01

    When managing for resilient forests, each soil’s inherent capacity to resist and recover from changes in soil function should be evaluated relative to the anticipated extent and duration of soil disturbance. Application of several key principles will help ensure healthy, resilient soils: (1) minimize physical disturbance using guidelines tailored to specific soil types...

  10. Protein analysis in dissolved organic matter: What proteins from organic debris, soil leachate and surface water can tell us - a perspective

    Directory of Open Access Journals (Sweden)

    W. X. Schulze

    2005-01-01

    Full Text Available Mass spectrometry based analysis of proteins is widely used to study cellular processes in model organisms. However, it has not yet routinely been applied in environmental research. Based on observations that protein can readily be detected as a component of dissolved organic matter (DOM, this article gives an example about the possible use of protein analysis in ecology and environmental sciences focusing on different terrestrial ecosystems. At this stage, there are two areas of interest: (1 the identification of phylogenetic groups contributing to the environmental protein pool, and (2 identification of the organismic origin of specific enzymes that are important for ecosystem processes. In this paper, mass spectrometric protein analysis was applied to identify proteins from decomposing plant material and DOM of soil leachates and surface water samples derived from different environments. It is concluded, that mass spectrometric protein analysis is capable of distinguishing phylogenetic origin of proteins from litter protein extracts, leachates of different soil horizons, and from various sources of terrestrial surface water. Current limitation is imposed by the limited knowledge of complete genomes of soil organisms. The protein analysis allows to relate protein presence to biogeochemical processes, and to identify the source organisms for specific active enzymes. Further applications, such as in pollution research are conceivable. In summary, the analysis of proteins opens a new area of research between the fields of microbiology and biogeochemistry.

  11. The impact of land use on biological activity of agriculture soils. An State-of-the-Art

    Science.gov (United States)

    Morugán-Coronado, Alicia; Cerdà, Artemi; García-Orenes, Fuensanta

    2014-05-01

    112 (1), 18-26 Morugán-Coronado, A., García-Orenes, F., Mataix-Solera, J., Arcenegui, V., Mataix-Beneyto, J. 2013. Application of soil quality indices to assess the status of agricultural soils irrigated with treated wastewaters. Solid Earth 4 (1), 119-127 2013 Pampulha ME, Oliveira A (2006) Impact of an herbicide combination of bromoxynil and prosulfuron on soil microorganisms. Current Microbiology 53: 238-243. Paz-Ferreiro, J., Fu., S. 2013. Biological indices for soil quality evaluation: perspectives and limitations. Land degradation & development. DOI: 10.1002/ldr.2262 Vasconcellos, R. L. F., Bonfim, J. A., Baretta, D., Cardoso, E.J.B.N. 2013. Arbuscular mycorrhizal fungi and glomalin-related soil protein as potential indicators of soil quality in a recuperation gradient of the Atlantic forest in brazil. Land degradation & development. DOI: 10.1002/ldr.2228

  12. DEVELOPMENT OF ACID-SOIL TOLERANT CORN (Zea mays L. WITH HIGH-QUALITY PROTEIN

    Directory of Open Access Journals (Sweden)

    E.S. Halimi

    2011-06-01

    Full Text Available Corn is an important food crop in Indonesia. Plant expansion has been hampered by soil-acidity problem and the protein content of many corn varieties was low. This research initiates development of soil-acid-tolerant corn with high-quality-protein content. Research was done on 12 factorial treatments and 3 replications as blocks in RCBD. The first factor was corn populations: Toray-1(G1, Toray-2(G2, GS-5(G3 and GS-10(G4. The second factor was fertilizations: P1(69 kg N+36 kg P2O5+15 kg K2O per ha; P2(115 kg N+54 kg P2O5+30 kg K2O per ha; and P3(161 kg N+72 kg P2O5+45 kg K2O per ha. The observed variables consisted of several agronomic traits, including the protein content. Results indicated that the corn populations, in general, showed good agronomic traits. The differences were mostly between populations, not between fertilizations, and no interaction was observed. The yield potential ranged from 4.25 to 6.47 ton dry seeds per ha. The protein content of seed resulted from cross ranged from 9.84% to 11.30%, as compared to the parents of 9.11% and 12.62%. This research concludes that genetic factors play an important role as confirmed by heritability estimate (h2=0.75.

  13. Membrane proteins involved in transport, vesicle traffic and Ca(2+) signaling increase in beetroots grown in saline soils.

    Science.gov (United States)

    Lino, Bárbara; Chagolla, Alicia; E González de la Vara, Luis

    2016-07-01

    By separating plasma membrane proteins according to their hydropathy from beetroots grown in saline soils, several proteins probably involved in salt tolerance were identified by mass spectrometry. Beetroots, as a salt-tolerant crop, have developed mechanisms to cope with stresses associated with saline soils. To observe which plasma membrane (PM) proteins were more abundant in beet roots grown in saline soils, beet root plants were irrigated with water or 0.2 M NaCl. PM-enriched membrane preparations were obtained from these plants, and their proteins were separated according to their hydropathy by serial phase partitioning with Triton X-114. Some proteins whose abundance increased visibly in membranes from salt-grown beetroots were identified by mass spectrometry. Among them, there was a V-type H(+)-ATPase (probably from contaminating vacuolar membranes), which increased with salt at all stages of beetroots' development. Proteins involved in solute transport (an H(+)-transporting PPase and annexins), vesicle traffic (clathrin and synaptotagmins), signal perception and transduction (protein kinases and phospholipases, mostly involved in calcium signaling) and metabolism, appeared to increase in salt-grown beetroot PM-enriched membranes. These results suggest that PM and vacuolar proteins involved in transport, metabolism and signal transduction increase in beet roots adapted to saline soils. In addition, these results show that serial phase partitioning with Triton X-114 is a useful method to separate membrane proteins for their identification by mass spectrometry.

  14. A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts.

    Science.gov (United States)

    Redmile-Gordon, M A; Armenise, E; White, R P; Hirsch, P R; Goulding, K W T

    2013-12-01

    Soil extracts usually contain large quantities of dissolved humified organic material, typically reflected by high polyphenolic content. Since polyphenols seriously confound quantification of extracted protein, minimising this interference is important to ensure measurements are representative. Although the Bradford colorimetric assay is used routinely in soil science for rapid quantification protein in soil-extracts, it has several limitations. We therefore investigated an alternative colorimetric technique based on the Lowry assay (frequently used to measure protein and humic substances as distinct pools in microbial biofilms). The accuracies of both the Bradford assay and a modified Lowry microplate method were compared in factorial combination. Protein was quantified in soil-extracts (extracted with citrate), including standard additions of model protein (BSA) and polyphenol (Sigma H1675-2). Using the Lowry microplate assay described, no interfering effects of citrate were detected even with concentrations up to 5 times greater than are typically used to extract soil protein. Moreover, the Bradford assay was found to be highly susceptible to two simultaneous and confounding artefacts: 1) the colour development due to added protein was greatly inhibited by polyphenol concentration, and 2) substantial colour development was caused directly by the polyphenol addition. In contrast, the Lowry method enabled distinction between colour development from protein and non-protein origin, providing a more accurate quantitative analysis. These results suggest that the modified-Lowry method is a more suitable measure of extract protein (defined by standard equivalents) because it is less confounded by the high polyphenolic content which is so typical of soil extracts.

  15. Abiotic Protein Fragmentation by Manganese Oxide: Implications for a Mechanism to Supply Soil Biota with Oligopeptides.

    Science.gov (United States)

    Reardon, Patrick N; Chacon, Stephany S; Walter, Eric D; Bowden, Mark E; Washton, Nancy M; Kleber, Markus

    2016-04-05

    The ability of plants and microorganisms to take up organic nitrogen in the form of free amino acids and oligopeptides has received increasing attention over the last two decades, yet the mechanisms for the formation of such compounds in soil environments remain poorly understood. We used Nuclear Magnetic Resonance (NMR) and Electron Paramagnetic Resonance (EPR) spectroscopies to distinguish the reaction of a model protein with a pedogenic oxide (Birnessite, MnO2) from its response to a phyllosilicate (Kaolinite). Our data demonstrate that birnessite fragments the model protein while kaolinite does not, resulting in soluble peptides that would be available to soil biota and confirming the existence of an abiotic pathway for the formation of organic nitrogen compounds for direct uptake by plants and microorganisms. The absence of reduced Mn(II) in the solution suggests that birnessite acts as a catalyst rather than an oxidant in this reaction. NMR and EPR spectroscopies are shown to be valuable tools to observe these reactions and capture the extent of protein transformation together with the extent of mineral response.

  16. Soil

    International Nuclear Information System (INIS)

    Freudenschuss, A.; Huber, S.; Riss, A.; Schwarz, S.; Tulipan, M.

    2002-01-01

    Environmental soil surveys in each province of Austria have been performed, soils of about 5,000 sites were described and analyzed for nutrients and pollutants, the majority of these data are recorded in the soil information system of Austria (BORIS) soil database, http://www.ubavie.gv.at/umweltsituation/boden/boris), which also contains a soil map of Austria, data from 30 specific investigations mainly in areas with industry and results from the Austria - wide cesium investigation. With respect to the environmental state of soils a short discussion is given, including two geographical charts, one showing which sites have soil data (2001) and the other the cadmium distribution in top soils according land use (forest, grassland, arable land, others). Information related to the soil erosion, Corine land cover (Europe-wide land cover database), evaluation of pollutants in soils (reference values of As, Cd, Co, Cr, Cu, Hg, Mo, Ni, Se, Pb, Tl, Va, Zn, AOX, PAH, PCB, PCDD/pcdf, dioxin), and relevant Austrian and European standards and regulations is provided. Figs. 2, Tables 4. (nevyjel)

  17. Soils

    International Nuclear Information System (INIS)

    Freudenschuss, A.; Huber, S.; Riss, A.; Schwarz, S.; Tulipan, M.

    2001-01-01

    For Austria there exists a comprehensive soil data collection, integrated in a GIS (geographical information system). The content values of pollutants (cadmium, mercury, lead, copper, mercury, radio-cesium) are given in geographical charts and in tables by regions and by type of soil (forests, agriculture, greenland, others) for the whole area of Austria. Erosion effects are studied for the Austrian region. Legal regulations and measures for an effective soil protection, reduction of soil degradation and sustainable development in Austria and the European Union are discussed. (a.n.)

  18. Effects of solution chemistry and aging time on prion protein adsorption and replication of soil-bound prions.

    Directory of Open Access Journals (Sweden)

    Samuel E Saunders

    2011-04-01

    Full Text Available Prion interactions with soil may play an important role in the transmission of chronic wasting disease (CWD and scrapie. Prions are known to bind to a wide range of soil surfaces, but the effects of adsorption solution chemistry and long-term soil binding on prion fate and transmission risk are unknown. We investigated HY TME prion protein (PrP(Sc adsorption to soil minerals in aqueous solutions of phosphate buffered saline (PBS, sodium chloride, calcium chloride, and deionized water using western blotting. The replication efficiency of bound prions following adsorption in these solutions was also evaluated by protein misfolding cyclic amplification (PMCA. Aging studies investigated PrP(Sc desorption and replication efficiency up to one year following adsorption in PBS or DI water. Results indicate that adsorption solution chemistry can affect subsequent prion replication or desorption ability, especially after incubation periods of 30 d or longer. Observed effects were minor over the short-term (7 d or less. Results of long-term aging experiments demonstrate that unbound prions or prions bound to a diverse range of soil surfaces can readily replicate after one year. Our results suggest that while prion-soil interactions can vary with solution chemistry, prions bound to soil could remain a risk for transmitting prion diseases after months in the environment.

  19. Effects of Soil Water Deficit on Insecticidal Protein Expression in Boll Shells of Transgenic Bt Cotton and the Mechanism

    Directory of Open Access Journals (Sweden)

    Xiang Zhang

    2017-12-01

    Full Text Available This study was conducted to investigate the effects of soil water deficit on insecticidal protein expression in boll shells of cotton transgenic for a Bt gene. In 2014, Bt cotton cultivars Sikang 1 (a conventional cultivar and Sikang 3 (a hybrid cultivar were planted in pots and five soil water content treatments were imposed at peak boll stage: 15% (G1, 35% (G2, 40% (G3, 60% (G4, and 75% field capacity (CK, respectively. Four treatments (G2, G3, G4, and CK were repeated in 2015 in the field. Results showed that the insecticidal protein content of boll shells decreased with increasing water deficit. Compared with CK, boll shell insecticidal protein content decreased significantly when soil water content was below 60% of maximum water holding capacity for Sikang 1 and Sikang 3. However, increased Bt gene expression was observed when boll shell insecticidal protein content was significantly reduced. Activity assays of key enzymes in nitrogen metabolism showed that boll shell protease and peptidase increased but nitrogen reductase and glutamic-pyruvic transaminase (GPT decreased. Insecticidal protein content exhibited significant positive correlation with nitrogen reductase and GPT activities; and significant negative correlation with protease and peptidase activities. These findings suggest that the decrease of insecticidal protein content associated with increasing water deficit was a net result of decreased synthesis and increased decomposition.

  20. Enzyme Sorption onto Soil and Biocarbon Amendments Alters Catalytic Capacity and Depends on the Specific Protein and pH

    Science.gov (United States)

    Foster, E.; Fogle, E. J.; Cotrufo, M. F.

    2017-12-01

    Enzymes catalyze biogeochemical reactions in soils and play a key role in nutrient cycling in agricultural systems. Often, to increase soil nutrients, agricultural managers add organic amendments and have recently experimented with charcoal-like biocarbon products. These amendments can enhance soil water and nutrient holding capacity through increasing porosity. However, the large surface area of the biocarbon has the potential to sorb nutrients and other organic molecules. Does the biocarbon decrease nutrient cycling through sorption of enzymes? In a laboratory setting, we compared the interaction of two purified enzymes β-glucosidase and acid phosphatase with a sandy clay loam and two biocarbons. We quantified the sorbed enzymes at three different pHs using a Bradford protein assay and then measured the activity of the sorbed enzyme via high-throughput fluorometric analysis. Both sorption and activity depended upon the solid phase, pH, and specific enzyme. Overall the high surface area biocarbon impacted the catalytic capacity of the enzymes more than the loam soil, which may have implications for soil nutrient management with these organic amendments.

  1. Assessment of heavy metal bioavailability in contaminated sediments and soils using green fluorescent protein-based bacterial biosensors

    International Nuclear Information System (INIS)

    Liao, V.H.-C.; Chien, M.-T.; Tseng, Y.-Y.; Ou, K.-L.

    2006-01-01

    A green fluorescent protein (GFP)-based bacterial biosensor Escherichia coli DH5α (pVLCD1) was developed based on the expression of gfp under the control of the cad promoter and the cadC gene of Staphylococcus aureus plasmid pI258. DH5α (pVLCD1) mainly responded to Cd(II), Pb(II), and Sb(III), the lowest detectable concentrations being 0.1 nmol L -1 , 10 nmol L -1 , and 0.1 nmol L -1 , respectively, with 2 h exposure. The biosensor was field-tested to measure the relative bioavailability of the heavy metals in contaminated sediments and soil samples. The results showed that the majority of heavy metals remained adsorbed to soil particles: Cd(II)/Pb(II) was only partially available to the biosensor in soil-water extracts. Our results demonstrate that the GFP-based bacterial biosensor is useful and applicable in determining the bioavailability of heavy metals with high sensitivity in contaminated sediment and soil samples and suggests a potential for its inexpensive application in environmentally relevant sample tests. - Nonpathogenic GFP-based bacterial biosensor is applicable in determining the bioavailability of heavy metals in environmental samples

  2. Fixation of enzyme protein in soil by the clay mineral montmorillonite

    DEFF Research Database (Denmark)

    Sørensen, L.H.

    1969-01-01

    Aminosäureverbindungen, die im Boden während des biologischen Abbaus von Kohlehydraten gebildet und vom Tonmineral Montmorillonit stabilisiert werden, haben Enzymcharakter und sind folglich Proteine.......Aminosäureverbindungen, die im Boden während des biologischen Abbaus von Kohlehydraten gebildet und vom Tonmineral Montmorillonit stabilisiert werden, haben Enzymcharakter und sind folglich Proteine....

  3. Sequestration of soil nitrogen as tannin-protein complexes may improve the competitive ability of sheep laurel (Kalmia angustifolia) relative to black spruce (Picea mariana).

    Science.gov (United States)

    Joanisse, G D; Bradley, R L; Preston, C M; Bending, G D

    2009-01-01

    The role of litter tannins in controlling soil nitrogen (N) cycling may explain the competitive ability of Kalmia relative to black spruce (Picea mariana), although this has not been demonstrated experimentally. Here, the protein-precipitation capacities of purified tannins and leaf extracts from Kalmia and black spruce were compared. The resistance to degradation of tannin-protein precipitates from both species were compared by monitoring carbon (C) and N dynamics in humus amended with protein, purified tannins or protein-tannin precipitates. The purity of the precipitates was verified using solid-state (13)C nuclear magnetic resonance (NMR) spectra. The ability of mycorrhizal fungi associated with both species to grow on media amended with tannin-protein complexes as the principal N source was also compared. The protein precipitation capacity of Kalmia tannins was superior to those of black spruce. Humus amended with protein increased both mineral and microbial N, whereas humus amended with tannin-protein precipitates increased dissolved organic N. Mycorrhizal fungi associated with Kalmia showed better growth than those associated with black spruce when N was provided as tannin-protein precipitates. These data suggest that Kalmia litter increases the amount of soil N sequestered as tannin-protein complexes, which may improve the competitive ability of Kalmia relative to black spruce by favouring N uptake by mycorrhizas associated with the former.

  4. Major Proteins of the Amyloplast of Agar and Soil - Grown Potato Tubers

    DEFF Research Database (Denmark)

    Hald, Simon; Blennow, Andreas; Stensballe, Allan

    and total tuber extracts by SDS-PAGE and the specific activities of marker enzymes for amyloplast, cytosol, mitochondria and the vacuole. SDS-PAGE separated amyloplast and starch granule proteins were in-gel digested with trypsin, analyzed by mass spectrometry, and identified by searches against presently...

  5. Dryland Winter Wheat Yield, Grain Protein, and Soil Nitrogen Responses to Fertilizer and Biosolids Applications

    Directory of Open Access Journals (Sweden)

    Richard T. Koenig

    2011-01-01

    Full Text Available Applications of biosolids were compared to inorganic nitrogen (N fertilizer for two years at three locations in eastern Washington State, USA, with diverse rainfall and soft white, hard red, and hard white winter wheat (Triticum aestivum L. cultivars. High rates of inorganic N tended to reduce yields, while grain protein responses to N rate were positive and linear for all wheat market classes. Biosolids produced 0 to 1400 kg ha−1 (0 to 47% higher grain yields than inorganic N. Wheat may have responded positively to nutrients other than N in the biosolids or to a metered N supply that limited vegetative growth and the potential for moisture stress-induced reductions in grain yield in these dryland production systems. Grain protein content with biosolids was either equal to or below grain protein with inorganic N, likely due to dilution of grain N from the higher yields achieved with biosolids. Results indicate the potential to improve dryland winter wheat yields with biosolids compared to inorganic N alone, but perhaps not to increase grain protein concentration of hard wheat when biosolids are applied immediately before planting.

  6. Absolute quantification of norovirus capsid protein in food, water, and soil using synthetic peptides with electrospray and MALDI mass spectrometry

    International Nuclear Information System (INIS)

    Hartmann, Erica M.; Colquhoun, David R.; Schwab, Kellogg J.; Halden, Rolf U.

    2015-01-01

    Highlights: • Mass spectrometry-based methods for norovirus quantification are developed. • Absolute quantification is achieved using internal heavy isotope-labeled standards. • A single labeled peptide serves in two distinct detection strategies. • These methods are validated for food, water, and soil analysis. • MS-based detection limits are lowered by two orders of magnitude. - Abstract: Norovirus infections are one of the most prominent public health problems of microbial origin in the U.S. and other industrialized countries. Surveillance is necessary to prevent secondary infection, confirm successful cleanup after outbreaks, and track the causative agent. Quantitative mass spectrometry, based on absolute quantitation with stable-isotope labeled peptides, is a promising tool for norovirus monitoring because of its speed, sensitivity, and robustness in the face of environmental inhibitors. In the current study, we present two new methods for the detection of the norovirus genogroup I capsid protein using electrospray and matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. The peptide TLDPIEVPLEDVR was used to quantify norovirus-like particles down to 500 attomoles with electrospray and 100 attomoles with MALDI. With MALDI, we also demonstrate a detection limit of 1 femtomole and a quantitative dynamic range of 5 orders of magnitude in the presence of an environmental matrix effect. Due to the rapid processing time and applicability to a wide range of environmental sample types (bacterial lysate, produce, milk, soil, and groundwater), mass spectrometry-based absolute quantitation has a strong potential for use in public health and environmental sciences

  7. Absolute quantification of norovirus capsid protein in food, water, and soil using synthetic peptides with electrospray and MALDI mass spectrometry

    Energy Technology Data Exchange (ETDEWEB)

    Hartmann, Erica M. [Center for Environmental Security and Security Defense Systems Initiative, The Biodesign Institute, Arizona State University, 781 E. Terrace Mall, Tempe, AZ 85287-5904 (United States); Colquhoun, David R.; Schwab, Kellogg J. [Department of Environmental Health Sciences, The Johns Hopkins University, Bloomberg School of Public Health, 615 N. Wolfe St., Baltimore, MD 21205 (United States); Halden, Rolf U., E-mail: halden@asu.edu [Center for Environmental Security and Security Defense Systems Initiative, The Biodesign Institute, Arizona State University, 781 E. Terrace Mall, Tempe, AZ 85287-5904 (United States); Department of Environmental Health Sciences, The Johns Hopkins University, Bloomberg School of Public Health, 615 N. Wolfe St., Baltimore, MD 21205 (United States)

    2015-04-09

    Highlights: • Mass spectrometry-based methods for norovirus quantification are developed. • Absolute quantification is achieved using internal heavy isotope-labeled standards. • A single labeled peptide serves in two distinct detection strategies. • These methods are validated for food, water, and soil analysis. • MS-based detection limits are lowered by two orders of magnitude. - Abstract: Norovirus infections are one of the most prominent public health problems of microbial origin in the U.S. and other industrialized countries. Surveillance is necessary to prevent secondary infection, confirm successful cleanup after outbreaks, and track the causative agent. Quantitative mass spectrometry, based on absolute quantitation with stable-isotope labeled peptides, is a promising tool for norovirus monitoring because of its speed, sensitivity, and robustness in the face of environmental inhibitors. In the current study, we present two new methods for the detection of the norovirus genogroup I capsid protein using electrospray and matrix-assisted laser desorption/ionization (MALDI) mass spectrometry. The peptide TLDPIEVPLEDVR was used to quantify norovirus-like particles down to 500 attomoles with electrospray and 100 attomoles with MALDI. With MALDI, we also demonstrate a detection limit of 1 femtomole and a quantitative dynamic range of 5 orders of magnitude in the presence of an environmental matrix effect. Due to the rapid processing time and applicability to a wide range of environmental sample types (bacterial lysate, produce, milk, soil, and groundwater), mass spectrometry-based absolute quantitation has a strong potential for use in public health and environmental sciences.

  8. The roles of protein and lipid in the accumulation and distribution of perfluorooctane sulfonate (PFOS) and perfluorooctanoate (PFOA) in plants grown in biosolids-amended soils.

    Science.gov (United States)

    Wen, Bei; Wu, Yali; Zhang, Hongna; Liu, Yu; Hu, Xiaoyu; Huang, Honglin; Zhang, Shuzhen

    2016-09-01

    The roles of protein and lipid in the accumulation and distribution of perfluorooctane sulfonate (PFOS) and perfluorooctanoate (PFOA) in seven species of plants from biosolids-amended soils were investigated. The PFOS and PFOA root concentration factors (Croot/Csoil) ranged from 1.37 to 4.68 and 1.69 to 10.3 (ng/groot)/(ng/gsoil), respectively, while the translocation factors (Cshoot/Croot) ranged from 0.055 to 0.16 and 0.093 to 1.8 (ng/gshoot)/(ng/groot), respectively. The PFOS and PFOA accumulations in roots correlated positively with root protein contents (P distribution of PFOS and PFOA in plants. Copyright © 2016 Elsevier Ltd. All rights reserved.

  9. Production of the {sup 14}C-labeled insecticidal protein Cry1Ab for soil metabolic studies using a recombinant Escherichia coli in small-scale batch fermentations

    Energy Technology Data Exchange (ETDEWEB)

    Valldor, Petra; Miethling-Graff, Rona; Dockhorn, Susanne; Martens, Rainer; Tebbe, Christoph C. [Federal Research Institute for Rural Areas, Forestry and Fisheries, Braunschweig (Germany). Thuenen Institute (vTI) for Biodiversity

    2012-10-15

    Insecticidal Cry proteins naturally produced by Bacillus thuringiensis are a major recombinant trait expressed by genetically modified crops. They are released into the soil during and after cropping. The objective of this study was to produce {sup 14}C-labeled Cry1Ab proteins for soil metabolic studies in scope of their environmental risk assessment. Cry1Ab was synthesized as a protoxin by Escherichia coli HB101 pMP in 200-mL liquid batch culture fermentations and purified from inclusion bodies after trypsin digestion. For cultivation, U-{sup 14}C-glycerol was the main carbon source. Inclusion bodies were smaller and Cry1Ab yield was lower when the initial amount of total organic carbon in the cultivation broth was below 6.4 mg C L{sup -1}. Concentrations of 12.6 g {sup 14}C-labeled glycerol L{sup -1} (1 % v/v) resulted in the production of 17.1 mg {sup 14}C-Cry1Ab L{sup -1} cultivation medium. {sup 14}C mass balances showed that approx. 50 % of the label was lost by respiration and 20 % remained in the growth media, while the residual activity was associated with biomass. Depending on the production batch, 0.01 to 0.05 % of the total {sup 14}C originated from Cry1Ab. In the presence of 2.04 MBq {sup 14}C-labeled carbon sources, a specific activity of up to 268 Bq mg{sup -1} {sup 14}C-Cry1Ab was obtained. A more than threefold higher specific activity was achieved with 4.63 MBq and an extended cultivation period of 144 h. This study demonstrates that {sup 14}C-labeled Cry1Ab can be obtained from batch fermentations with E. coli in the presence of a simple {sup 14}C-labeled carbon source. It also provides a general strategy to produce {sup 14}C-labeled proteins useful for soil metabolic studies. (orig.)

  10. Variations in yield and gluten proteins in durum wheat varieties under late-season foliar versus soil application of nitrogen fertilizer in a northern Mediterranean environment.

    Science.gov (United States)

    Visioli, Giovanna; Bonas, Urbana; Dal Cortivo, Cristian; Pasini, Gabriella; Marmiroli, Nelson; Mosca, Giuliano; Vamerali, Teofilo

    2018-04-01

    With the increasing demand for high-quality foodstuffs and concern for environmental sustainability, late-season nitrogen (N) foliar fertilization of common wheat is now an important and widespread practice. This study investigated the effects of late-season foliar versus soil N fertilization on yield and protein content of four varieties of durum wheat, Aureo, Ariosto, Biensur and Liberdur, in a three-year field trial in northern Italy. Variations in low-molecular-weight glutenins (LMW-GS), high-molecular-weight glutenins (HMW-GS) and gliadins were assessed by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE). It was found that N applied to the canopy did not improve protein rate compared with N application to the soil (general mean 138 mg g -1 ), but moderately increased productivity in the high-yielding varieties Liberdur and Biensur (three-year means 7.23 vs 7.13 and 7.53 vs 7.09 t ha -1 respectively). Technological quality was mainly related to variety choice, Aureo and Ariosto having higher protein rates and glutenin/gliadin ratios. Also found was a strong 'variety × N application method' interaction in the proportions of protein subunits within each class, particularly LMW-GS and gliadins. A promising result was the higher N uptake efficiency, although as apparent balance, combined with higher HMW/LMW-GS ratio in var. Biensur. Late-season foliar N fertilization allows N fertilizer saving, potentially providing environmental benefits in the rainy climate of the northern Mediterranean area, and also leads to variety-dependent up-regulation of essential LMW-GS and gliadins. Variety choice is a key factor in obtaining high technological quality, although it is currently associated with modest grain yield. This study provides evidence of high quality in the specific high-yielding variety Biensur, suggesting its potential as a mono-varietal semolina for pasta production. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

  11. A Study on the Interaction of Rhodamine B with Methylthioadenosine Phosphorylase Protein Sourced from an Antarctic Soil Metagenomic Library

    Science.gov (United States)

    Bujacz, Anna; Wierzbicka-Woś, Anna; Kur, Józef

    2013-01-01

    The presented study examines the phenomenon of the fluorescence under UV light excitation (312 nm) of E. coli cells expressing a novel metagenomic-derived putative methylthioadenosine phosphorylase gene, called rsfp, grown on LB agar supplemented with a fluorescent dye rhodamine B. For this purpose, an rsfp gene was cloned and expressed in an LMG194 E. coli strain using an arabinose promoter. The resulting RSFP protein was purified and its UV-VIS absorbance spectrum and emission spectrum were assayed. Simultaneously, the same spectroscopic studies were carried out for rhodamine B in the absence or presence of RSFP protein or native E. coli proteins, respectively. The results of the spectroscopic studies suggested that the fluorescence of E. coli cells expressing rsfp gene under UV illumination is due to the interaction of rhodamine B molecules with the RSFP protein. Finally, this interaction was proved by a crystallographic study and then by site-directed mutagenesis of rsfp gene sequence. The crystal structures of RSFP apo form (1.98 Å) and complex RSFP/RB (1.90 Å) show a trimer of RSFP molecules located on the crystallographic six fold screw axis. The RSFP complex with rhodamine B revealed the binding site for RB, in the pocket located on the interface between symmetry related monomers. PMID:23383268

  12. Dry land Winter Wheat Yield, Grain Protein, and Soil Nitrogen Responses to Fertilizer and Bio solids Applications

    International Nuclear Information System (INIS)

    Koenig, R.T.; Cogger, C.G.; Bary, A.I.

    2011-01-01

    Applications of bio solids were compared to inorganic nitrogen (N) fertilizer for two years at three locations in eastern Washington State, USA, with diverse rainfall and soft white, hard red, and hard white winter wheat (Triticum aestivum L.) cultivars. High rates of inorganic N tended to reduce yields, while grain protein responses to N rate were positive and linear for all wheat market classes. Bio solids produced 0 to 1400 kg ha -1 (0 to 47%) higher grain yields than inorganic N. Wheat may have responded positively to nutrients other than N in the bio solids or to a metered N supply that limited vegetative growth and the potential for moisture stress-induced reductions in grain yield in these dry land production systems. Grain protein content with bio solids was either equal to or below grain protein with inorganic N, likely due to dilution of grain N from the higher yields achieved with bio solids. Results indicate the potential to improve dry land winter wheat yields with bio solids compared to inorganic N alone, but perhaps not to increase grain protein concentration of hard wheat when bio solids are applied immediately before planting.

  13. Compositional profile of α / β-hydrolase fold proteins in mangrove soil metagenomes: prevalence of epoxide hydrolases and haloalkane dehalogenases in oil-contaminated sites.

    Science.gov (United States)

    Jiménez, Diego Javier; Dini-Andreote, Francisco; Ottoni, Júlia Ronzella; de Oliveira, Valéria Maia; van Elsas, Jan Dirk; Andreote, Fernando Dini

    2015-05-01

    The occurrence of genes encoding biotechnologically relevant α/β-hydrolases in mangrove soil microbial communities was assessed using data obtained by whole-metagenome sequencing of four mangroves areas, denoted BrMgv01 to BrMgv04, in São Paulo, Brazil. The sequences (215 Mb in total) were filtered based on local amino acid alignments against the Lipase Engineering Database. In total, 5923 unassembled sequences were affiliated with 30 different α/β-hydrolase fold superfamilies. The most abundant predicted proteins encompassed cytosolic hydrolases (abH08; ∼ 23%), microsomal hydrolases (abH09; ∼ 12%) and Moraxella lipase-like proteins (abH04 and abH01; mangroves BrMgv01-02-03. This suggested selection and putative involvement in local degradation/detoxification of the pollutants. Seven sequences that were annotated as genes for putative epoxide hydrolases and five for putative haloalkane dehalogenases were found in a fosmid library generated from BrMgv02 DNA. The latter enzymes were predicted to belong to Actinobacteria, Deinococcus-Thermus, Planctomycetes and Proteobacteria. Our integrated approach thus identified 12 genes (complete and/or partial) that may encode hitherto undescribed enzymes. The low amino acid identity (< 60%) with already-described genes opens perspectives for both production in an expression host and genetic screening of metagenomes. © 2014 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.

  14. Compositional profile of α/β-hydrolase fold proteins in mangrove soil metagenomes: prevalence of epoxide hydrolases and haloalkane dehalogenases in oil-contaminated sites

    Science.gov (United States)

    Jiménez, Diego Javier; Dini-Andreote, Francisco; Ottoni, Júlia Ronzella; de Oliveira, Valéria Maia; van Elsas, Jan Dirk; Andreote, Fernando Dini

    2015-01-01

    The occurrence of genes encoding biotechnologically relevant α/β-hydrolases in mangrove soil microbial communities was assessed using data obtained by whole-metagenome sequencing of four mangroves areas, denoted BrMgv01 to BrMgv04, in São Paulo, Brazil. The sequences (215 Mb in total) were filtered based on local amino acid alignments against the Lipase Engineering Database. In total, 5923 unassembled sequences were affiliated with 30 different α/β-hydrolase fold superfamilies. The most abundant predicted proteins encompassed cytosolic hydrolases (abH08; ∼ 23%), microsomal hydrolases (abH09; ∼ 12%) and Moraxella lipase-like proteins (abH04 and abH01; mangroves BrMgv01-02-03. This suggested selection and putative involvement in local degradation/detoxification of the pollutants. Seven sequences that were annotated as genes for putative epoxide hydrolases and five for putative haloalkane dehalogenases were found in a fosmid library generated from BrMgv02 DNA. The latter enzymes were predicted to belong to Actinobacteria, Deinococcus-Thermus, Planctomycetes and Proteobacteria. Our integrated approach thus identified 12 genes (complete and/or partial) that may encode hitherto undescribed enzymes. The low amino acid identity (< 60%) with already-described genes opens perspectives for both production in an expression host and genetic screening of metagenomes. PMID:25171437

  15. Forest soils

    Science.gov (United States)

    Charles H. (Hobie) Perry; Michael C. Amacher

    2009-01-01

    Productive soils are the foundation of sustainable forests throughout the United States. Forest soils are generally subjected to fewer disturbances than agricultural soils, particularly those that are tilled, so forest soils tend to have better preserved A-horizons than agricultural soils. Another major contrast between forest and agricultural soils is the addition of...

  16. Soil and Soil Water Relationships

    OpenAIRE

    Easton, Zachary M.; Bock, Emily

    2017-01-01

    Discusses the relationships between soil, water and plants. Discusses different types of soil, and how these soils hold water. Provides information about differences in soil drainage. Discusses the concept of water balance.

  17. SOIL Geo-Wiki: A tool for improving soil information

    Science.gov (United States)

    Skalský, Rastislav; Balkovic, Juraj; Fritz, Steffen; See, Linda; van der Velde, Marijn; Obersteiner, Michael

    2014-05-01

    Crowdsourcing is increasingly being used as a way of collecting data for scientific research, e.g. species identification, classification of galaxies and unravelling of protein structures. The WorldSoilProfiles.org database at ISRIC is a global collection of soil profiles, which have been 'crowdsourced' from experts. This system, however, requires contributors to have a priori knowledge about soils. Yet many soil parameters can be observed in the field without specific knowledge or equipment such as stone content, soil depth or color. By crowdsourcing this information over thousands of locations, the uncertainty in current soil datasets could be radically reduced, particularly in areas currently without information or where multiple interpretations are possible from different existing soil maps. Improved information on soils could benefit many research fields and applications. Better soil data could enhance assessments of soil ecosystem services (e.g. soil carbon storage) and facilitate improved process-based ecosystem modeling from local to global scales. Geo-Wiki is a crowdsourcing tool that was developed at IIASA for land cover validation using satellite imagery. Several branches are now available focused on specific aspects of land cover validation, e.g. validating cropland extent or urbanized areas. Geo-Wiki Pictures is a smart phone application for collecting land cover related information on the ground. The extension of Geo-Wiki to a mobile environment provides a tool for experts in land cover validation but is also a way of reaching the general public in the validation of land cover. Here we propose a Soil Geo-Wiki tool that builds on the existing functionality of the Geo-Wiki application, which will be largely designed for the collection and sharing of soil information. Two distinct applications are envisaged: an expert-oriented application mainly for scientific purposes, which will use soil science related language (e.g. WRB or any other global reference

  18. Soil algae

    African Journals Online (AJOL)

    Timothy Ademakinwa

    Also, the importance of algae in soil formation and soil fertility improvement cannot be over ... The presence of nitrogen fixing microalgae (Nostoc azollae) in the top soil of both vegetable ..... dung, fish food and dirty water from fish ponds on.

  19. Soil pollution and soil protection

    OpenAIRE

    Haan, de, F.A.M.; Visser-Reijneveld, M.I.

    1996-01-01

    This book was compiled from lecture handouts prepared for the international postgraduate course on soil quality, entitled 'Soil Pollution and Soil Protection' given jointly by the universities of Wageningen (The Netherlands), Gent and Leuven (Belgium), under the auspices of the international Training Centre (PHLO) of Wageningen Agricultural University.Of the three environmental compartments air, water and soil, it is soil that varies most in composition under natural conditions. The effects o...

  20. Compositional profile of α / β-hydrolase fold proteins in mangrove soil metagenomes : Prevalence of epoxide hydrolases and haloalkane dehalogenases in oil-contaminated sites

    NARCIS (Netherlands)

    Jiménez Avella, Diego; Dini Andreote, Francisco; Ottoni, Júlia Ronzella; de Oliveira, Valéria Maia; van Elsas, Jan Dirk; Andreote, Fernando Dini

    The occurrence of genes encoding biotechnologically relevant α/β-hydrolases in mangrove soil microbial communities was assessed using data obtained by whole-metagenome sequencing of four mangroves areas, denoted BrMgv01 to BrMgv04, in São Paulo, Brazil. The sequences (215 Mb in total) were filtered

  1. On the binding of BODIPY-GTP by the photosensory protein YtvA from the common soil bacterium Bacillus subtilis

    NARCIS (Netherlands)

    Nakasone, Y.; Hellingwerf, K.J.

    2011-01-01

    The YtvA protein, which is one of the proteins that comprises the network carrying out the signal transfer inducing the general stress response in Bacillus subtilis, is composed of an N-terminal LOV domain (that binds a flavin [FMN]) and a C-terminal STAS domain. This latter domain shows sequence

  2. Direct and indirect effects of glomalin, mycorrhizal hyphae, and roots on aggregate stability in rhizosphere of trifoliate orange.

    Science.gov (United States)

    Wu, Qiang-Sheng; Cao, Ming-Qin; Zou, Ying-Ning; He, Xin-hua

    2014-07-25

    To test direct and indirect effects of glomalin, mycorrhizal hyphae, and roots on aggregate stability, perspex pots separated by 37-μm nylon mesh in the middle were used to form root-free hyphae and root/hyphae chambers, where trifoliate orange (Poncirus trifoliata) seedlings were colonized by Funneliformis mosseae or Paraglomus occultum in the root/hyphae chamber. Both fungal species induced significantly higher plant growth, root total length, easily-extractable glomalin-related soil protein (EE-GRSP) and total GRSP (T-GRSP), and mean weight diameter (an aggregate stability indicator). The Pearson correlation showed that root colonization or soil hyphal length significantly positively correlated with EE-GRSP, difficultly-extractable GRSP (DE-GRSP), T-GRSP, and water-stable aggregates in 2.00-4.00, 0.50-1.00, and 0.25-0.50 mm size fractions. The path analysis indicated that in the root/hyphae chamber, aggregate stability derived from a direct effect of root colonization, EE-GRSP or DE-GRSP. Meanwhile, the direct effect was stronger by EE-GRSP or DE-GRSP than by mycorrhizal colonization. In the root-free hyphae chamber, mycorrhizal-mediated aggregate stability was due to total effect but not direct effect of soil hyphal length, EE-GRSP and T-GRSP. Our results suggest that GRSP among these tested factors may be the primary contributor to aggregate stability in the citrus rhizosphere.

  3. Solarization soil

    International Nuclear Information System (INIS)

    Abou Ghraibe, W.

    1995-01-01

    Solar energy could be used in pest control, in soil sterilization technology. The technique consists of covering humid soils by plastic films steadily fixed to the soil. Timing must be in summer during 4-8 weeks, where soil temperature increases to degrees high enough to control pests or to produce biological and chemical changes. The technique could be applied on many pests soil, mainly fungi, bacteria, nematods, weeds and pest insects. The technique could be used in greenhouses as well as in plastic film covers or in orchards where plastic films present double benefits: soil sterilization and production of black mulch. Mechanism of soil solarization is explained. Results show that soil solarization can be used in pest control after fruit crops cultivation and could be a method for an integrated pest control. 9 refs

  4. Soils - Volusia County Soils (Polygons)

    Data.gov (United States)

    NSGIC Local Govt | GIS Inventory — Soils: 1:24000 SSURGO Map. Polygon boundaries of Soils in Volusia County, downloaded from SJRWMD and created by NRCS and SJRWMD. This data set is a digital version...

  5. Soil microbiology and soil health assessment

    Science.gov (United States)

    Soil scientists have long recognized the importance of soil biology in ecological health. In particular, soil microbes are crucial for many soil functions including decomposition, nutrient cycling, synthesis of plant growth regulators, and degradation of synthetic chemicals. Currently, soil biologis...

  6. Soil metagenomics and tropical soil productivity

    OpenAIRE

    Garrett, Karen A.

    2009-01-01

    This presentation summarizes research in the soil metagenomics cross cutting research activity. Soil metagenomics studies soil microbial communities as contributors to soil health.C CCRA-4 (Soil Metagenomics)

  7. Soil pollution and soil protection

    NARCIS (Netherlands)

    Haan, de F.A.M.; Visser-Reijneveld, M.I.

    1996-01-01

    This book was compiled from lecture handouts prepared for the international postgraduate course on soil quality, entitled 'Soil Pollution and Soil Protection' given jointly by the universities of Wageningen (The Netherlands), Gent and Leuven (Belgium), under the auspices of the international

  8. The Extracellular Heme-binding Protein HbpS from the Soil Bacterium Streptomyces reticuli Is an Aquo-cobalamin Binder*

    Science.gov (United States)

    Ortiz de Orué Lucana, Darío; Fedosov, Sergey N.; Wedderhoff, Ina; Che, Edith N.; Torda, Andrew E.

    2014-01-01

    The extracellular protein HbpS from Streptomyces reticuli interacts with iron ions and heme. It also acts in concert with the two-component sensing system SenS-SenR in response to oxidative stress. Sequence comparisons suggested that the protein may bind a cobalamin. UV-visible spectroscopy confirmed binding (Kd = 34 μm) to aquo-cobalamin (H2OCbl+) but not to other cobalamins. Competition experiments with the H2OCbl+-coordinating ligand CN− and comparison of mutants identified a histidine residue (His-156) that coordinates the cobalt ion of H2OCbl+ and substitutes for water. HbpS·Cobalamin lacks the Asp-X-His-X-X-Gly motif seen in some cobalamin binding enzymes. Preliminary tests showed that a related HbpS protein from a different species also binds H2OCbl+. Furthermore, analyses of HbpS-heme binding kinetics are consistent with the role of HbpS as a heme-sensor and suggested a role in heme transport. Given the high occurrence of HbpS-like sequences among Gram-positive and Gram-negative bacteria, our findings suggest a great functional versatility among these proteins. PMID:25342754

  9. Soil friability

    DEFF Research Database (Denmark)

    Munkholm, Lars Juhl

    2011-01-01

    This review gathers and synthesizes literature on soil friability produced during the last three decades. Soil friability is of vital importance for crop production and the impact of crop production on the environment. A friable soil is characterized by an ease of fragmentation of undesirably large...... aggregates/clods and a difficulty in fragmentation of minor aggregates into undesirable small elements. Soil friability has been assessed using qualitative field methods as well as quantitative field and laboratory methods at different scales of observation. The qualitative field methods are broadly used...... by scientists, advisors and farmers, whereas the quantitative laboratory methods demand specialized skills and more or less sophisticated equipment. Most methods address only one aspect of soil friability, i.e. either the strength of unconfined soil or the fragment size distribution after applying a stress. All...

  10. Soil Mechanics

    OpenAIRE

    Verruijt, A.

    2010-01-01

    This book is the text for the introductory course of Soil Mechanics in the Department of Civil Engineering of the Delft University of Technology, as I have given from 1980 until my retirement in 2002. It contains an introduction into the major principles and methods of soil mechanics, such as the analysis of stresses, deformations, and stability. The most important methods of determining soil parameters, in the laboratory and in situ, are also described. Some basic principles of applied mecha...

  11. Soil Solution

    NARCIS (Netherlands)

    Sonneveld, C.; Voogt, W.

    2009-01-01

    The characteristics of the soil solution in the root environment in the greenhouse industry differ much from those for field grown crops. This is caused firstly by the growing conditions in the greenhouse, which strongly differ from those in the field and secondly the function attributed to the soil

  12. Soil washing

    International Nuclear Information System (INIS)

    Neuman, R.S.; Diel, B.N.; Halpern, Y.

    1992-01-01

    Disposal of soils or sludges contaminated with organic and inorganic compounds is a major problem for environmental remedial activities, hazardous waste generators, and the disposal industry. This paper reports that many of these wastes can be effectively treated utilizing soil washing technology. CWM has been developing soil washing technology over the past few years, with extensive work being conducted on the bench scale. These studies have demonstrated consistently high removal efficiencies (95-99%) for a wide variety of PCB and petroleum hydrocarbon contaminated waste. Recently, a comprehensive study examining the removal of both organic and inorganic contraminants from two different types of surrogate soil matrices was completed. In addition to establishing the range of contaminants that can be removed from soil, a method for surfactant/water separation was evaluated. For example, using a thermal phase separation method, approximately 90% of the surfactant could be recovered from the water

  13. Soil Forming Factors

    Science.gov (United States)

    It! What is Soil? Chip Off the Old Block Soil Forming Factors Matters of Life and Death Underneath It All Wise Choices A World of Soils Soil Forming Factors 2 A Top to Bottom Guide 3 Making a Soil Monolith 4 Soil Orders 5 State Soil Monoliths 6 Where in the Soil World Are You? >> A Top to

  14. What is Soil?

    Science.gov (United States)

    It! What is Soil? Chip Off the Old Block Soil Forming Factors Matters of Life and Death Underneath It All Wise Choices A World of Soils Soil? 2 The Skin of the Earth 3 Soil Ingredients 4 Soil Recipes 5 CLORPT for Short >> What Is Soil? Soils Make Life Plants grow in and from

  15. Agriculture: Soils

    Science.gov (United States)

    Productive soils, a favorable climate, and clean and abundant water resources are essential for growing crops, raising livestock, and for ecosystems to continue to provide the critical provisioning services that humans need.

  16. Improved Biosensors for Soils

    Science.gov (United States)

    Silberg, J. J.; Masiello, C. A.; Cheng, H. Y.

    2014-12-01

    Microbes drive processes in the Earth system far exceeding their physical scale, affecting crop yields, water quality, the mobilization of toxic materials, and fundamental aspects of soil biogeochemistry. The tools of synthetic biology have the potential to significantly improve our understanding of microbial Earth system processes: for example, synthetic microbes can be be programmed to report on environmental conditions that stimulate greenhouse gas production, metal oxidation, biofilm formation, pollutant degradation, and microbe-plant symbioses. However, these tools are only rarely deployed in the lab. This research gap arises because synthetically programmed microbes typically report on their environment by producing molecules that are detected optically (e.g., fluorescent proteins). Fluorescent reporters are ideal for petri-dish applications and have fundamentally changed how we study human health, but their usefulness is quite limited in soils where detecting fluorescence is challenging. Here we describe the construction of gas-reporting biosensors, which release nonpolar gases that can be detected in the headspace of incubation experiments. These constructs can be used to probe microbial processes within soils in real-time noninvasive lab experiments. These biosensors can be combined with traditional omics-based approaches to reveal processes controlling soil microbial behavior and lead to improved environmental management decisions.

  17. Programmed survival of soil bacteria

    DEFF Research Database (Denmark)

    Jensen, Lars Bogø; Molin, Søren; Sternberg, Claus

    Biological containment systems have been developed for Pseudomonas putida and related soil bacteria. The systems are based on combinations of lethal genes and regulated gene expression. Two types of killing function have been employed: 1) A membrane protein interfering with the membrane potential...

  18. Behavior of oxyfluorfen in soils amended with different sources of organic matter. Effects on soil biology.

    Science.gov (United States)

    Gómez, Isidoro; Rodríguez-Morgado, Bruno; Parrado, Juan; García, Carlos; Hernández, Teresa; Tejada, Manuel

    2014-05-30

    We performed a laboratory study on the effect of oxyfluorfen at a rate of 4lha(-1) on biological properties of a soil amended with four organic wastes (two biostimulants/biofertilizers, obtained from rice bran, RB1 and RB2; municipal solid waste, MSW; and sheep manure, SM). Soil was mixed with SM at a rate of 1%, MSW at a rate of 0.52%, RB1 at a rate of 0.39% and RB2 at a rate of 0.30%, in order to apply the same amount of organic matter to the soil. The enzymatic activities and microbial community in the soil were determined during the incubation times. The application of RB1 and RB2 to soil without oxyfluorfen increased the enzymatic activities and biodiversity, peaking at day 10 of the incubation period. This stimulation was higher in the soil amended with RB2 than in that amended with RB1. In SM and CF-amended soils, the stimulation of enzymatic activities and soil biodiversity increased during the experiment. The application of herbicide in organic-amended soils decreased the inhibition of soil enzymatic activities and soil biodiversity. Possibly the low molecular weight protein content easily assimilated by soil microorganisms and the higher fat content in the biostimulants/biofertilizers are responsible for the lower inhibition of these soil biological properties. Copyright © 2014 Elsevier B.V. All rights reserved.

  19. Soil Survey Geographic (SSURGO) - Magnesic Soils

    Data.gov (United States)

    California Natural Resource Agency — Magnesic soils is a subset of the SSURGO dataset containing soil family selected based on the magnesic content and serpentinite parent material. The following soil...

  20. Soil shrinkage characteristics in swelling soils

    International Nuclear Information System (INIS)

    Taboada, M.A.

    2004-01-01

    The objectives of this presentation are to understand soil swelling and shrinkage mechanisms, and the development of desiccation cracks, to distinguish between soils having different magnitude of swelling, as well as the consequences on soil structural behaviour, to know methods to characterize soil swell/shrink potential and to construct soil shrinkage curves, and derive shrinkage indices, as well to apply them to assess soil management effects

  1. PERSISTENCE IN SOIL OF TRANSGENIC PLANT PRODUCED BACILLUS THURINGIENSIS VAR. KURSTAKI O-ENDOTOXIN1

    Science.gov (United States)

    Transgenic plants that produce pesticidal proteins will release these proteins into the soil when these plants are incorporated into the soil by tillage or as leaf litter. Little is known about the fate and persistence of transgenic plant pesticidal products in the soil. We used ...

  2. Soil moisture

    Science.gov (United States)

    L. L. Boersma; D. Kirkham; D. Norum; R. Ziemer; J. C. Guitjens; J. Davidson; J. N. Luthin

    1971-01-01

    Infiltration continues to occupy the attention of soil physicists and engineers. A theoretical and experimental analysis of the effect of surface sealing on infiltration by Edwards and Larson [1969] showed that raindrops reduced the infiltration rate by as much as 50% for a two-hour period of infiltration. The effect of raindrops on the surface infiltration rate of...

  3. Soil microbiology

    International Nuclear Information System (INIS)

    Wolf, D.C.; Legg, J.O.

    1984-01-01

    The major areas of soil microbiological and biochemical research which have involved both stable and radioactive isotopes are summarized. These include microbial decomposition of naturally occurring materials, microbial biomass, interactions of plants and microbes, denitrification, mineralization and immobilization of nitrogen and biological nitrogen fixation. (U.K.)

  4. Soil fertility management: Impacts on soil macrofauna, soil aggregation and soil organic matter allocation.

    NARCIS (Netherlands)

    Ayuke, F.O.; Brussaard, L.; Vanlauwe, B.; Six, J.; Lelei, D.K.; Kibunja, C.N.; Pulleman, M.M.

    2011-01-01

    Maintenance of soil organic matter through integrated soil fertility management is important for soil quality and agricultural productivity, and for the persistence of soil faunal diversity and biomass. Little is known about the interactive effects of soil fertility management and soil macrofauna

  5. Basic Soils. Revision.

    Science.gov (United States)

    Montana State Univ., Bozeman. Dept. of Agricultural and Industrial Education.

    This curriculum guide is designed for use in teaching a course in basic soils that is intended for college freshmen. Addressed in the individual lessons of the unit are the following topics: the way in which soil is formed, the physical properties of soil, the chemical properties of soil, the biotic properties of soil, plant-soil-water…

  6. Soils and organic sediments

    International Nuclear Information System (INIS)

    Head, M.J.

    1999-01-01

    The organic component of soils is basically made up of substances of an individual nature (fats, waxes, resins, proteins, tannic substances, and many others), and humic substances (Kononova, 1966). These are complex polymers formed from breakdown products of the chemical and biological degradation of plant and animal residues. They are dark coloured, acidic, predominantly aromatic compounds ranging in molecular weight from less than one thousand to tens of thousands (Schnitzer, 1977). They can be partitioned into three main fractions:(i) Humic acid, which is soluble in dilute alkaline solution, but can be precipitated by acidification of the alkaline extract.(ii) Fulvic acid, which is soluble in alkaline solution, but is also soluble on acidification.(iii) Humin that cannot be extracted from the soil or sediment by dilute acid or alkaline solutions. It has mostly been assumed that the humic and fulvic acid components of the soil are part of the mobile, or 'active' component, and the humin component is part of the 'passive' component. Other types of organic sediments are likely to contain chemical breakdown products of plant material, plant fragments and material brought in from outside sources. The outside material can be contemporaneous with sediment deposition, can be older material, or younger material incorporated into the sediment long after deposition. Recognition of 'foreign' material is essential for dating, but is not an easy task. Examples of separation techniques for humic and non humic components are evaluated for their efficiency

  7. Effects of electrokinetic treatment of a heavy metal contaminated soil on soil enzyme activities

    International Nuclear Information System (INIS)

    Cang Long; Zhou Dongmei; Wang Quanying; Wu Danya

    2009-01-01

    There is a growing concern on the potential application of a direct current (DC) electric field to soil for removing contaminants, but little is known about its impact on soil enzyme activities. This study investigated the change of enzyme activities of a heavy metal contaminated soil before and after electrokinetic (EK) treatments at lab-scale and the mechanisms of EK treatment to affect soil enzyme activities were explored. After treatments with 1-3 V cm -1 of voltage gradient for 420 h, soil pH, electrical conductivity (EC), soil organic carbon, dissolved organic carbon (DOC), soil heavy metal concentration and enzyme activities were analyzed. The results showed that the average removal efficiencies of soil copper were about 65% and 83% without and with pH control of catholyte, respectively, and all the removal efficiencies of cadmium were above 90%. The soil invertase and catalase activities increased and the highest invertase activity was as 170 times as the initial one. The activities of soil urease and acidic phosphatase were lower than the initial ones. Bivariate correlation analyses indicated that the soil invertase and acidic phosphatase activities were significantly correlated with soil pH, EC, and DOC at P < 0.05, but the soil urease activities had no correlation with the soil properties. On the other hand, the effects of DC electric current on solution invertase and catalase enzyme protein activities indicated that it had negative effect on solution catalase activity and little effect on solution invertase activity. From the change of invertase and catalase activities in soil and solution, the conclusion can be drawn that the dominant effect mechanism is the change of soil properties by EK treatments.

  8. Effects of electrokinetic treatment of a heavy metal contaminated soil on soil enzyme activities

    Energy Technology Data Exchange (ETDEWEB)

    Cang Long [State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008 (China); Graduate School of the Chinese Academy of Sciences, Beijing 100049 (China); Zhou Dongmei, E-mail: dmzhou@issas.ac.cn [State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008 (China); Wang Quanying; Wu Danya [State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008 (China); Graduate School of the Chinese Academy of Sciences, Beijing 100049 (China)

    2009-12-30

    There is a growing concern on the potential application of a direct current (DC) electric field to soil for removing contaminants, but little is known about its impact on soil enzyme activities. This study investigated the change of enzyme activities of a heavy metal contaminated soil before and after electrokinetic (EK) treatments at lab-scale and the mechanisms of EK treatment to affect soil enzyme activities were explored. After treatments with 1-3 V cm{sup -1} of voltage gradient for 420 h, soil pH, electrical conductivity (EC), soil organic carbon, dissolved organic carbon (DOC), soil heavy metal concentration and enzyme activities were analyzed. The results showed that the average removal efficiencies of soil copper were about 65% and 83% without and with pH control of catholyte, respectively, and all the removal efficiencies of cadmium were above 90%. The soil invertase and catalase activities increased and the highest invertase activity was as 170 times as the initial one. The activities of soil urease and acidic phosphatase were lower than the initial ones. Bivariate correlation analyses indicated that the soil invertase and acidic phosphatase activities were significantly correlated with soil pH, EC, and DOC at P < 0.05, but the soil urease activities had no correlation with the soil properties. On the other hand, the effects of DC electric current on solution invertase and catalase enzyme protein activities indicated that it had negative effect on solution catalase activity and little effect on solution invertase activity. From the change of invertase and catalase activities in soil and solution, the conclusion can be drawn that the dominant effect mechanism is the change of soil properties by EK treatments.

  9. Biosensors for detection of mercury in contaminated soils

    International Nuclear Information System (INIS)

    Bontidean, Ibolya; Mortari, Alessia; Leth, Suzanne; Brown, Nigel L.; Karlson, Ulrich; Larsen, Martin M.; Vangronsveld, Jaco; Corbisier, Philippe; Csoeregi, Elisabeth

    2004-01-01

    Biosensors based on whole bacterial cells and on bacterial heavy metal binding protein were used to determine the mercury concentration in soil. The soil samples were collected in a vegetable garden accidentally contaminated with elemental mercury 25 years earlier. Bioavailable mercury was measured using different sensors: a protein-based biosensor, a whole bacterial cell based biosensor, and a plant sensor, i.e. morphological and biochemical responses in primary leaves and roots of bean seedlings grown in the mercury-contaminated soil. For comparison the total mercury concentration of the soil samples was determined by AAS. Whole bacterial cell and protein-based biosensors gave accurate responses proportional to the total amount of mercury in the soil samples. On the contrary, plant sensors were found to be less useful indicators of soil mercury contamination, as determined by plant biomass, mercury content of primary leaves and enzyme activities

  10. Soil tillage

    OpenAIRE

    Dierauer, Hansueli

    2013-01-01

    The web platform offers a compilation of various formats and materials dealing with reduced tillage and its challenges regarding weeds. A selection of short movies about mechanical weeding, green manure and tailor-made machinery is listed. Leaflets and publications on reduced tillage can be downloaded. In there, different treatments and machinery are tested and compared to advice farmers on how to conserve soil while keeping weed under control. For Swiss farmers information on the leg...

  11. Soil sampling

    International Nuclear Information System (INIS)

    Fortunati, G.U.; Banfi, C.; Pasturenzi, M.

    1994-01-01

    This study attempts to survey the problems associated with techniques and strategies of soil sampling. Keeping in mind the well defined objectives of a sampling campaign, the aim was to highlight the most important aspect of representativeness of samples as a function of the available resources. Particular emphasis was given to the techniques and particularly to a description of the many types of samplers which are in use. The procedures and techniques employed during the investigations following the Seveso accident are described. (orig.)

  12. Soil use and management

    NARCIS (Netherlands)

    Hartemink, A.E.; McBratney, A.B.; White, R.E.

    2009-01-01

    This four-volume set, edited by leading experts in soil science, brings together in one collection a series of papers that have been fundamental to the development of soil science as a defined discipline. Volume 3 on Soil Use and Management covers: - Soil evaluation and land use planning - Soil and

  13. Soil properties and processes

    NARCIS (Netherlands)

    Hartemink, A.E.; McBratney, A.B.; White, R.E.

    2009-01-01

    This four-volume set, edited by leading experts in soil science, brings together in one collection a series of papers that have been fundamental to the development of soil science as a defined discipline. Tis volume 2 on Soil Properties and Processes covers: - Soil physics - Soil (bio)chemistry -

  14. Soil and Pesticides

    Science.gov (United States)

    ; Environment Human Health Animal Health Safe Use Practices Food Safety Environment Air Water Soil Wildlife Home Page Pesticides and the Environment Soil and Pesticides Related Topics: What Happens to Pesticides español Soil and Pesticides Soil can be degraded and the community of organisms living in the soil can

  15. Crude protein changes on grassland along a degradation gradient ...

    African Journals Online (AJOL)

    Evapotranspiration was determined by quantifying the soil-water balance equation with the aid of runoff plots and soil-water content measurements. Crude protein ... The study shows that it is important to keep grassland in optimal condition to utilize limited soil water for sustainable plant and therefore animal production.

  16. Characterization of Soil Organic Matter in Peat Soil with Different Humification Levels using FTIR

    Science.gov (United States)

    Teong, I. T.; Felix, N. L. L.; Mohd, S.; Sulaeman, A.

    2016-07-01

    Peat soil is defined as an accumulation of the debris and vegetative under the water logging condition. Soil organic matter of peat soil was affected by the environmental, weather, types of vegetative. Peat soil was normally classified based on its level of humification. Humification can be defined as the transformation of numerous group of substances (proteins, carbohydrates, lipids, etc.) and individual molecules present in living organic matter into group of substances with similar properties (humic substances). During the peat transformation process, content of soil organic matter also will change. Hence, that is important to determine out the types of the organic compound. FTIR (Fourier Transform Infrared) is a machine which is used to differential soil organic matter by using infrared. Infrared is a types of low energy which can determine the organic minerals. Hence, FTIR can be suitable as an indicator on its level of humification. The main objective of this study is to identify an optimized method to characterization of the soil organic content in different level of humification. The case study areas which had been chosen for this study are Parit Sulong, Batu Pahat and UCTS, Sibu. Peat soil samples were taken by every 0.5 m depth until it reached the clay layer. However, the soil organic matter in different humification levels is not significant. FTIR is an indicator which is used to determine the types of soil, but it is unable to differentiate the soil organic matter in peat soil FTIR can determine different types of the soil based on different wave length. Generally, soil organic matter was found that it is not significant to the level of humification.

  17. Detailed Soils 24K

    Data.gov (United States)

    Kansas Data Access and Support Center — This data set is a digital soil survey and is the most detailed level of soil geographic data developed by the National Cooperative Soil Survey. The information was...

  18. Indicators: Soil Chemistry

    Science.gov (United States)

    The chemical makeup of the soil can provide information on wetland condition, wetland water quality and services being provided by the wetland ecosystem. Analyzing soil chemistry reveals if the soil is contaminated with a toxic chemical or heavy metal.

  19. Tropical Soil Chemistry

    DEFF Research Database (Denmark)

    Borggaard, Ole K.

    and environmental protection. Tropical Soil Chemistry by Ole K. Borggaard provides an overview of the composition, occurrence, properties, processes, formation, and environmental vulnerability of various tropical soil types (using American Soil Taxonomy for classification). The processes and the external factors...... soil chemical issues are also presented to assess when, why, and how tropical soils differ from soils in other regions. This knowledge can help agricultural specialists in the tropics establish sustainable crop production. Readers are assumed to be familiar with basic chemistry, physics...

  20. Soil Scientific Research Methods Used in Archaeology – Promising Soil Biochemistry: a Mini-review

    Directory of Open Access Journals (Sweden)

    Valerie Vranová

    2015-01-01

    Full Text Available This work seeks to review soil scientific methods that have been used and are still being used in archaeology. This review paper aims at emphasising the importance of soil science practice to archaeology thus adding a scientific analytical nature to the cultural nature of archaeology. Common methods (physical, chemical and biochemical used to analyse archaeological soils and artefacts is touched on and their strengths and shortcomings duly noted to become the base for future research. Furthermore, the authors made emphasis on distinctive excavating/sampling methods, biochemical analyses focused on distinctive features of plough-land and soil organic matter mineralization, Counter Immunoelectrophoresis (CEIP method by the presence of proteins testing, carbon analyses such as carbon-14 dating techniques, soil phosphorus studies and geochemical analyses of hematite Fe2O3 and cinnabaryte HgS contents. It is obvious that, the future of archaeology is in the soil because the soil harbours information of the past hence the synergy between soil and archaeological research has to be strengthened and archaeology made a prime agenda by soil scientists by expanding the analyses scope of total phosphorus extraction and giving attention to soil magnetism.

  1. Sorters for soil cleanup

    International Nuclear Information System (INIS)

    Bramlitt, E.T.; Johnson, N.R.; Tomicich, M.J.

    1991-01-01

    A soil sorter is a system with conveyor, radiation detectors, and a gate. The system activates the gate based on radiation measurements to sort soil to either clean or contaminated paths. Automatic soil sorters have been perfected for use in the cleanup of plutonium contaminated soil at Johnston Atoll. The cleanup processes soil through a plant which mines plutonium to make soil clean. Sorters at various locations in the plant effectively reduce the volume of soil for mining and they aid in assuring clean soil meets guidelines

  2. Soil-structure interaction including nonlinear soil

    OpenAIRE

    Gicev, Vlado

    2008-01-01

    There are two types of models of soil-structure system depending upon the rigidity of foundation: models with rigid and models with flexible foundation. Main features of the soil-structure interaction phenomenon: -wave scattering, -radiation damping, -reduction of the system frequencies. In this presentation, the influence of interaction on the development of nonlinear zones in the soil is studied.

  3. Direct Detection of Soil-Bound Prions

    Science.gov (United States)

    Genovesi, Sacha; Leita, Liviana; Sequi, Paolo; Andrighetto, Igino; Sorgato, M. Catia; Bertoli, Alessandro

    2007-01-01

    Scrapie and chronic wasting disease are contagious prion diseases affecting sheep and cervids, respectively. Studies have indicated that horizontal transmission is important in sustaining these epidemics, and that environmental contamination plays an important role in this. In the perspective of detecting prions in soil samples from the field by more direct methods than animal-based bioassays, we have developed a novel immuno-based approach that visualises in situ the major component (PrPSc) of prions sorbed onto agricultural soil particles. Importantly, the protocol needs no extraction of the protein from soil. Using a cell-based assay of infectivity, we also report that samples of agricultural soil, or quartz sand, acquire prion infectivity after exposure to whole brain homogenates from prion-infected mice. Our data provide further support to the notion that prion-exposed soils retain infectivity, as recently determined in Syrian hamsters intracerebrally or orally challanged with contaminated soils. The cell approach of the potential infectivity of contaminated soil is faster and cheaper than classical animal-based bioassays. Although it suffers from limitations, e.g. it can currently test only a few mouse prion strains, the cell model can nevertheless be applied in its present form to understand how soil composition influences infectivity, and to test prion-inactivating procedures. PMID:17957252

  4. Direct detection of soil-bound prions.

    Directory of Open Access Journals (Sweden)

    Sacha Genovesi

    Full Text Available Scrapie and chronic wasting disease are contagious prion diseases affecting sheep and cervids, respectively. Studies have indicated that horizontal transmission is important in sustaining these epidemics, and that environmental contamination plays an important role in this. In the perspective of detecting prions in soil samples from the field by more direct methods than animal-based bioassays, we have developed a novel immuno-based approach that visualises in situ the major component (PrP(Sc of prions sorbed onto agricultural soil particles. Importantly, the protocol needs no extraction of the protein from soil. Using a cell-based assay of infectivity, we also report that samples of agricultural soil, or quartz sand, acquire prion infectivity after exposure to whole brain homogenates from prion-infected mice. Our data provide further support to the notion that prion-exposed soils retain infectivity, as recently determined in Syrian hamsters intracerebrally or orally challenged with contaminated soils. The cell approach of the potential infectivity of contaminated soil is faster and cheaper than classical animal-based bioassays. Although it suffers from limitations, e.g. it can currently test only a few mouse prion strains, the cell model can nevertheless be applied in its present form to understand how soil composition influences infectivity, and to test prion-inactivating procedures.

  5. profitability of soil erosion control technologies in eastern uganda

    African Journals Online (AJOL)

    Prof. Adipala Ekwamu

    The lack of farmer awareness of costs and benefits associated with the use of sustainable land management (SLM) .... land under soil erosion control technologies, cost of labour and ..... and promotion of quality protein maize hybrids in Ghana.

  6. Soil structural behaviour of flooded soils

    International Nuclear Information System (INIS)

    Taboada, M.A.

    2004-01-01

    The objectives of this presentation are to: identify factors determining of the structural behaviour of flooded soils, as compared to those acting in upland soils; analyse the influence of reductive processes on aggregate stabilising agents; discuss mechanisms of structural deterioration and recovery during the flooding-drying cycle, on the basis of a case study: cattle trampling effects in the flooding Pampa of Argentina. Flooded soils, now known as Hydric soils, are characteristic of wetlands and irrigated fields cropped to rice (paddy soils). In them, water covers the soil, or is present either at or near the surface of the soil all year or for varying periods of time during the year. Hydric soils belong to different taxa of the FAO-UNESCO Soil Map (2000). Fluvisols, Planosols and Gleysols are widespread distributed in the globe. The generation of redoximorphic features is due to different causes in each of them. Fluvisols are covered part of the year by surface water from river overflows; Planosols are soils having an impervious Bt horizon, supporting perched water during short periods; and Gleysols are soils affected by stagnant water tables during long periods

  7. Yield performance of cowpea plant introductions grown in calcareous soils

    Science.gov (United States)

    Cowpea or Southernpea [Vigna unguiculata (L.) Walp.] is an important legume crop used as a feed for livestock, as a green vegetable and for consumption of its dry beans which provide 22-25% protein. The crop is very sensitive to alkaline soil conditions. When grown at a soil pH of 7.5 or higher, co...

  8. Visual soil evaluation and soil compaction research

    DEFF Research Database (Denmark)

    M.L. Guimarães, Rachel; Keller, Thomas; Munkholm, Lars Juhl

    2017-01-01

    Following on from discussions that took place during the 19th International Conference of the International Soil Tillage Research Organization (ISTRO) in Montevideo, Uruguay, in 2012, the ISTRO working groups “Visual Soil Examination and Evaluation” (VSEE) and “Subsoil Compaction” decided...... to organize a joint workshop. The present special issue is an outcome from the workshop on “Soil structural quality of tropical soils: Visual evaluation methods and soil compaction prevention strategies” that was held 26–29 May 2014 in Maringá, Paraná, Brazil. There has been a long-lasting interest in Visual...... Soil Evaluation (VSE). An ISTRO working group was established more than 30 years ago with the objectives to exchange knowledge and experiences on field methods of visual-tactile soil assessment and to foster international cooperation on new or refined methods. The three previous meeting of the group...

  9. 11 Soil Microbial Biomass

    African Journals Online (AJOL)

    186–198. Insam H. (1990). Are the soil microbial biomass and basal respiration governed by the climatic regime? Soil. Biol. Biochem. 22: 525–532. Insam H. D. and Domsch K. H. (1989). Influence of microclimate on soil microbial biomass. Soil Biol. Biochem. 21: 211–21. Jenkinson D. S. (1988). Determination of microbial.

  10. Hot fire, cool soil

    NARCIS (Netherlands)

    Stoof, C.R.; Moore, D.; Fernandes, P.; Stoorvogel, J.J.; Fernandes, R.; Ferreira, A.J.D.; Ritsema, C.J.

    2013-01-01

    Wildfires greatly increase a landscape's vulnerability to flooding and erosion events by removing vegetation and changing soils. Fire damage to soil increases with increasing soil temperature, and, for fires where smoldering combustion is absent, the current understanding is that soil temperatures

  11. Visual soil evaluation

    DEFF Research Database (Denmark)

    Visual Soil Evaluation (VSE) provides land users and environmental authorities with the tools to assess soil quality for crop performance. This book describes the assessment of the various structural conditions of soil, especially after quality degradation such as compaction, erosion or organic...... and nutrient leaching, and for diagnosing and rectifying erosion and compaction in soils....

  12. Restoring Soil Quality to Mitigate Soil Degradation

    Directory of Open Access Journals (Sweden)

    Rattan Lal

    2015-05-01

    Full Text Available Feeding the world population, 7.3 billion in 2015 and projected to increase to 9.5 billion by 2050, necessitates an increase in agricultural production of ~70% between 2005 and 2050. Soil degradation, characterized by decline in quality and decrease in ecosystem goods and services, is a major constraint to achieving the required increase in agricultural production. Soil is a non-renewable resource on human time scales with its vulnerability to degradation depending on complex interactions between processes, factors and causes occurring at a range of spatial and temporal scales. Among the major soil degradation processes are accelerated erosion, depletion of the soil organic carbon (SOC pool and loss in biodiversity, loss of soil fertility and elemental imbalance, acidification and salinization. Soil degradation trends can be reversed by conversion to a restorative land use and adoption of recommended management practices. The strategy is to minimize soil erosion, create positive SOC and N budgets, enhance activity and species diversity of soil biota (micro, meso, and macro, and improve structural stability and pore geometry. Improving soil quality (i.e., increasing SOC pool, improving soil structure, enhancing soil fertility can reduce risks of soil degradation (physical, chemical, biological and ecological while improving the environment. Increasing the SOC pool to above the critical level (10 to 15 g/kg is essential to set-in-motion the restorative trends. Site-specific techniques of restoring soil quality include conservation agriculture, integrated nutrient management, continuous vegetative cover such as residue mulch and cover cropping, and controlled grazing at appropriate stocking rates. The strategy is to produce “more from less” by reducing losses and increasing soil, water, and nutrient use efficiency.

  13. Soil organic matter studies

    International Nuclear Information System (INIS)

    1977-01-01

    A total of 77 papers were presented and discussed during this symposium, 37 are included in this Volume II. The topics covered in this volume include: biochemical transformation of organic matter in soils; bitumens in soil organic matter; characterization of humic acids; carbon dating of organic matter in soils; use of modern techniques in soil organic matter research; use of municipal sludge with special reference to heavy metals constituents, soil nitrogen, and physical and chemical properties of soils; relationship of soil organic matter and plant metabolism; interaction between agrochemicals and organic matter; and peat. Separate entries have been prepared for those 20 papers which discuss the use of nuclear techniques in these studies

  14. Soil water management

    International Nuclear Information System (INIS)

    Nielsen, D.R.; Cassel, D.K.

    1984-01-01

    The use of radiation and tracer techniques in investigations into soil water management in agriculture, hydrology etc. is described. These techniques include 1) neutron moisture gauges to monitor soil water content and soil water properties, 2) gamma radiation attenuation for measuring the total density of soil and soil water content, 3) beta radiation attenuation for measuring changes in the water status of crop plants and 4) radioactive and stable tracers for identifying pathways, reactions and retention times of the constituents in soils and groundwater aquifers. The number and spacing of soil observations that should be taken to represent the management unit are also considered. (U.K.)

  15. Soil physical properties affecting soil erosion in tropical soils

    International Nuclear Information System (INIS)

    Lobo Lujan, D.

    2004-01-01

    The total vegetated land area of the earth is about 11,500 hectare. Of this, about 12% is in South America. Of this, about 14% is degraded area. Water erosion, chemical degradation, wind erosion, and physical degradation have been reported as main types of degradation. In South America water erosion is a major process for soil degradation. Nevertheless, water erosion can be a consequence of degradation of the soil structure, especially the functional attributes of soil pores to transmit and retain water, and to facilitate root growth. Climate, soil and topographic characteristics determine runoff and erosion potential from agricultural lands. The main factors causing soil erosion can be divided into three groups: Energy factors: rainfall erosivity, runoff volume, wind strength, relief, slope angle, slope length; Protection factors: population density, plant cover, amenity value (pressure for use) and land management; and resistance factors: soil erodibility, infiltration capacity and soil management. The degree of soil erosion in a particular climatic zone, with particular soils, land use and socioeconomic conditions, will always result from a combination of the above mentioned factors. It is not easy to isolate a single factor. However, the soil physical properties that determine the soil erosion process, because the deterioration of soil physical properties is manifested through interrelated problems of surface sealing, crusting, soil compaction, poor drainage, impeded root growth, excessive runoff and accelerated erosion. When an unprotected soil surface is exposed to the direct impact of raindrops it can produce different responses: Production of smaller aggregates, dispersed particles, particles in suspension and translocation and deposition of particles. When this has occurred, the material is reorganized at the location into a surface seal. Aggregate breakdown under rainfall depends on soil strength and a certain threshold kinetic energy is needed to start

  16. Soil Microbial and Faunal Community Responses to Bt-Maize and Insecticide in Two Soils

    DEFF Research Database (Denmark)

    Griffiths, B. S.; Caul, S.; Thompson, J.

    2006-01-01

    The effects of maize (Zea mays L.), genetically modified to express the Cry1Ab protein (Bt), and an insecticide on soil microbial and faunal communities were assessed in a glasshouse experiment. Soil for the experiment was taken from field sites where the same maize cultivars were grown to allow...

  17. Cross-cutting activities: Soil quality and soil metagenomics

    OpenAIRE

    Motavalli, Peter P.; Garrett, Karen A.

    2008-01-01

    This presentation reports on the work of the SANREM CRSP cross-cutting activities "Assessing and Managing Soil Quality for Sustainable Agricultural Systems" and "Soil Metagenomics to Construct Indicators of Soil Degradation." The introduction gives an overview of the extensiveness of soil degradation globally and defines soil quality. The objectives of the soil quality cross cutting activity are: CCRA-4 (Soil Metagenomics)

  18. Soil stabilization 1982

    Science.gov (United States)

    Barenberg, E. J.; Thompson, M. R.; Tayabji, S. D.; Nussbaum, P. J.; Ciolko, A. T.

    Seven papers cover the following areas: design, construction and performance of lime, fly ash, and slag pavement; evaluation of heavily loaded cement stabilized bases; coal refuse and fly ash compositions; potential highway base course materials; lime soil mixture design considerations for soils of southeastern United States; short term active soil property changes caused by injection of lime and fly ash; soil cement for use in stream channel grade stabilization structures; and reaction products of lime treated southeastern soils.

  19. UTILIZATION OF SOIL CONSERVATION PRACTICES AMONG ...

    African Journals Online (AJOL)

    IBUKUN

    fish are good sources of protein and are frequently used to supplement root crops and ... methods and hosts of others not mentioned either adds nutrients to the soil or .... (2.21±0.74), organic manure (2.19±0.62), crop rotation (2.16±0.48) and ...

  20. Soil hydraulic properties of Cuban soils

    International Nuclear Information System (INIS)

    Ruiz, M.E.; Medina, H.

    2004-01-01

    Because soil hydraulic properties are indispensable for determining soil water retention and soil water movement, their input for deterministic crop simulation models is essential. From these models is possible to access the effect of the weather changes, soil type or different irrigation schedules on crop yields. With these models, possibilities are provided to answer questions regarding virtual 'what happen if' experiments with a minimum of fieldwork. Nevertheless, determining soil hydraulic properties can be very difficult owing to unavailability of necessary equipment or the lack of personal with the proper knowledge for those tasks. These deficiencies are a real problem in developing countries, and even more so when there is not enough financial possibilities for research work. This paper briefly presents the way these properties have been accessed for Cuban soils, which methods have been used and the work now in progress. (author)

  1. [Microscopic soil fungi - bioindicators organisms contaminated soil].

    Science.gov (United States)

    Donerian, L G; Vodianova, M A; Tarasova, Zh E

    In the paper there are considered methodological issues for the evaluation of soil biota in terms of oil pollution. Experimental studies have shown that under the exposure of a various levels of oil pollution meeting certain gradations of the state and optimal alteration in microbocenosis in sod-podzolic soils, there is occurred a transformation of structure of the complex of micromycetes and the accumulation of toxic species, hardly typical for podzolic soils - primarily represantatives of the genus Aspergillus (A.niger and A. versicolor), Paecilomyces (P.variotii Bainer), Trichoderma (T.hamatum), the genus of phytopathogens Fusarium (F.oxysporum), dermatophytes of genus Sporothrix (S. schenckii) and dark-colored melanin containing fungi of Dematiaceae family. Besides that there are presented data on the study of microbiocenosis of the urban soil, the urban soil differed from the zone soil, but shaped in similar landscape and climatic conditions, and therefore having a tendency to a similar response from the side of microorganisms inhabiting the soil. Isolated complex of soil microscopic fungi is described by many authors as a complex, characteristic for soils of megalopolises. This allowed authors of this work to suggest that in urban soils the gain in the occurrence of pathogenic species micromycetes also increases against a background of chronic, continuously renewed inflow of petroleum hydrocarbons from various sources of pollution. Because changes in the species composition of micromycetes occurred in accordance with the increasing load of oil, so far as microscopic soil fungi can be recommended as a bioindicator organisms for oil. In the article there is also provided information about the distinctive features of modern DNA identification method of soil microscopic fungi and accepted in our country methodology of isolation of micromycetes with the use of a nutrient Czapek medium.

  2. Soil washing technology evaluation

    International Nuclear Information System (INIS)

    Suer, A.

    1995-04-01

    Environmental Restoration Engineering (ERE) continues to review innovative, efficient, and cost effective technologies for SRS soil and/or groundwater remediation. As part of this effort, this technical evaluation provides review and the latest information on the technology for SRS soil remediation. Additional technology evaluation reports will be issued periodically to update these reports. The purpose of this report is to review the soil washing technology and its potential application to SRS soil remediation. To assess whether the Soil Washing technology is a viable option for SRS soil remediation, it is necessary to review the technology/process, technology advantages/limitations, performance, applications, and cost analysis

  3. Behaviour of oxyfluorfen in soils amended with edaphic biostimulants/biofertilizers obtained from sewage sludge and chicken feathers. Effects on soil biological properties.

    Science.gov (United States)

    Rodríguez-Morgado, Bruno; Gómez, Isidoro; Parrado, Juan; Tejada, Manuel

    2014-09-01

    We studied the behaviour of oxyfluorfen herbicide at a rate of 4 l ha(-1) on biological properties of a Calcaric Regosol amended with two edaphic biostimulants/biofertilizers (SS, derived from sewage sludge; and CF, derived from chicken feathers). Oxyfluorfen was surface broadcast on 11 March 2013. Two days after application of oxyfluorfen to soil, both biostimulants/biofertilizers (BS) were also applied to the soil. An unamended soil without oxyfluorfen was used as control. For 2, 4, 7, 9, 20, 30, 60, 90 and 120 days of the application of herbicide to the soil and for each treatment, the soil dehydrogenase, urease, β-glucosidase and phosphatase activities were measured. For 2, 7, 30 and 120 days of the application of herbicide to the soil and for each treatment, soil microbial community was determined. The application of both BS to soil without the herbicide increased the enzymatic activities and soil biodiversity, mainly at 7 days of beginning the experiment. However, this stimulation was higher in the soil amended with SS than for CF. The application of herbicide in organic-amended soils decreased the inhibition of soil enzymatic activities and soil biodiversity. Possibly, the low-molecular-weight protein content easily assimilated by soil microorganisms is responsible for less inhibition of these soil biological properties.

  4. Soil transport parameters of potassium under a tropical saline soil condition using STANMOD

    Science.gov (United States)

    Suzanye da Silva Santos, Rafaelly; Honorio de Miranda, Jarbas; Previatello da Silva, Livia

    2015-04-01

    Environmental responsibility and concerning about the final destination of solutes in soil, so more studies allow a better understanding about the solutes behaviour in soil. Potassium is a macronutrient that is required in high concentrations, been an extremely important nutrient for all agricultural crops. It plays essential roles in physiological processes vital for plant growth, from protein synthesis to maintenance of plant water balance, and is available to plants dissolved in soil water while exchangeable K is loosely held on the exchange sites on the surface of clay particles. K will tend to be adsorbed onto the surface of negatively charged soil particles. Potassium uptake is vital for plant growth but in saline soils sodium competes with potassium for uptake across the plasma membrane of plant cells. This can result in high Na+:K+ ratios that reduce plant growth and eventually become toxic. This study aimed to obtain soil transport parameters of potassium in saline soil, such as: pore water velocity in soil (v), retardation factor (R), dispersivity (λ) and dispersion coefficient (D), in a disturbed sandy soil with different concentrations of potassium chlorate solution (KCl), which is one of the most common form of potassium fertilizer. The experiment was carried out using soil samples collected in a depth of 0 to 20 cm, applying potassium chlorate solution containing 28.6, 100, 200 and 500 mg L-1 of K. To obtain transport parameters, the data were adjusted with the software STANMOD. At low concentrations, interaction between potassium and soil occur more efficiently. It was observed that only the breakthrough curve prepared with solution of 500 mg L-1 reached the applied concentration, and the solution of 28.6 mg L-1 overestimated the parameters values. The STANMOD proved to be efficient in obtaining potassium transport parameters; KCl solution to be applied should be greater than 500 mg L-1; solutions with low concentrations tend to overestimate

  5. CONSIDERATIONS ON URBAN SOILS

    Directory of Open Access Journals (Sweden)

    Radu Lacatusu

    2005-10-01

    Full Text Available Urban soil is an material that has been manipulated, disturbed or transported by man’s activities in the urban environment and is used as a medium for plant growth and for constructions. The physical, chemical, and biological properties are generally less favorable as a rooting medium than soil found on the natural landscape. The main characteristics of urban soils are: great vertical and spatial variability; modified soil structure leading to compaction; presence of a surface crust; modified soil reaction, usually elevated; restricted aeration and water drainage; modified abundance of chemical elements, interrupted nutrient cycling and soil organism activity; presence of anthropic materials contaminants and pollutants; modified soil temperature regime. The urbic horizon is designated as U (always capital letter and for indication of processes are used different small letters. It is necessary elaboration a new classification of urban soils for our country.

  6. Grassland Soil Carbon Responses to Nitrogen Additions

    Science.gov (United States)

    Hofmockel, K. S.; Tfailly, M.; Callister, S.; Bramer, L.; Thompson, A.

    2017-12-01

    Using a long-term continental scale experiment, we tested if increases in nitrogen (N) inputs augment the accumulation of plant and microbial residues onto mineral soil surfaces. This research investigates N effects on molecular biogeochemistry across six sites from the Nutrient Network (NutNet) experiment. The coupling between concurrently changing carbon (C) and N cycles remains a key uncertainty in understanding feedbacks between the terrestrial C cycle and climate change. Existing models do not consider the full suite of linked C-N processes, particularly belowground, that could drive future C-climate feedbacks. Soil harbors a wealth of diverse organic molecules, most of which have not been measured in hypothesis driven field research. For the first time we systematically assess the chemical composition of soil organic matter (SOM) and functional characteristics of the soil microbiome, to enhance our understanding of the molecular underpinnings of ecosystem C and N cycling. We have acquired soils from 5 ecosystem experiments across the US that have been subjected to 8 years of N addition treatments. These soils have been analyzed for chemical composition to identify how the soil fertility and stability is altered by N fertilization. We found distinct SOM signatures from our field experiments and shifts in soil chemistry in response to 8 years of N fertilization. Across all sites, we found the molecular composition of SOM varied with clay content, supporting the importance of soil mineralogy in the accumulation of specific chemical classes of SOM. While many molecules were common across sites, we discovered a suite of molecules that were site specific. N fertilization had a significant effect on SOM composition. Differences between control and N amended plots were greater in sites rich in lipids and more complex molecules, compared to sites with SOM rich in amino-sugar and protein like substances. Our results have important implications for how SOM is

  7. iSOIL: Interactions between soil related sciences - Linking geophysics, soil science and digital soil mapping

    Science.gov (United States)

    Dietrich, Peter; Werban, Ulrike; Sauer, Uta

    2010-05-01

    High-resolution soil property maps are one major prerequisite for the specific protection of soil functions and restoration of degraded soils as well as sustainable land use, water and environmental management. To generate such maps the combination of digital soil mapping approaches and remote as well as proximal soil sensing techniques is most promising. However, a feasible and reliable combination of these technologies for the investigation of large areas (e.g. catchments and landscapes) and the assessment of soil degradation threats is missing. Furthermore, there is insufficient dissemination of knowledge on digital soil mapping and proximal soil sensing in the scientific community, to relevant authorities as well as prospective users. As one consequence there is inadequate standardization of techniques. At the poster we present the EU collaborative project iSOIL within the 7th framework program of the European Commission. iSOIL focuses on improving fast and reliable mapping methods of soil properties, soil functions and soil degradation risks. This requires the improvement and integration of advanced soil sampling approaches, geophysical and spectroscopic measuring techniques, as well as pedometric and pedophysical approaches. The focus of the iSOIL project is to develop new and to improve existing strategies and innovative methods for generating accurate, high resolution soil property maps. At the same time the developments will reduce costs compared to traditional soil mapping. ISOIL tackles the challenges by the integration of three major components: (i)high resolution, non-destructive geophysical (e.g. Electromagnetic Induction EMI; Ground Penetrating Radar, GPR; magnetics, seismics) and spectroscopic (e.g., Near Surface Infrared, NIR) methods, (ii)Concepts of Digital Soil Mapping (DSM) and pedometrics as well as (iii)optimized soil sampling with respect to profound soil scientific and (geo)statistical strategies. A special focus of iSOIL lies on the

  8. Electrochemical soil remediation - accelerated soil weathering?

    Energy Technology Data Exchange (ETDEWEB)

    Ottosen, L.M.; Villumsen, A.; Hansen, H.K.; Jensen, P.E.; Pedersen, A.J. [Dept. of Civil Engineering, Technical Univ. of Denmark, Lyngby (Denmark); Ribeiro, A.B. [Dept. of Environmental Sciences and Engineering, New Univ. of Lisbon, Monte da Caparica (Portugal)

    2001-07-01

    In electrochemical soil remediation systems, where enhancement solutions and complexing agents are not used, a developing acidic front is mobilizing the heavy metals and the electric current is removing the mobilized elements from the soil. The hypotheses investigated in this paper is whether this process may be comparable to the chemical soil weathering that occurs in the environment due to the acidic rain, where the mobilized elements are removed from the soil by the penetrating water. Even through the weathering process is highly accelerated in the electrochemical cell. This paper shows results from electrodialytic remediation experiments performed with four different Danish heavy metal polluted soils. The main emphasis is laid on the relation between the developing acidic front and electromigration of Cu, Zn, Mn, Mg, Fe and Ca. (orig.)

  9. Soil conservation measures: exercises

    OpenAIRE

    Figueiredo, Tomás de; Fonseca, Felícia

    2009-01-01

    Exercises proposed under the topic of Soil Conservation Measures addresses to the design of structural measure, namely waterways in the context of a soil conservation plan. However, to get a better insight on the actual meaning of soil loss as a resource loss, a prior exercise is proposed to students. It concerns calculations of soil loss due to sheet (interrill) erosion and to gully erosion, and allows the perception through realistic number of the impact of these mechanism...

  10. Population dynamics of soil microbes and diversity of Bacillus ...

    African Journals Online (AJOL)

    ONOS

    2010-01-25

    Jan 25, 2010 ... Population dynamics of soil microbes and diversity of ... 25.78, 25.78, 86.26, 24.73, 68.0, 26.8 and 26.8 kDa proteins and equivalent to Cyt, Cry5 and Cry2 toxins ..... Molecular weight (kDa) of protein fractions of the BT isolates.

  11. Genetic Variability in Soybean (Glycine max L.) for Low Soil ...

    African Journals Online (AJOL)

    Abush Tesfaye

    component analysis also revealed that the first five principal components (PCs) accounted for more ... nutritional value with 40% protein and 20% oil (Fekadu et al., 2009) that makes it an important raw ...... protein and oil content under both conditions using molecular marker technologies. ... for global modeling. Soil Use and ...

  12. Phosphorus in agricultural soils:

    NARCIS (Netherlands)

    Ringeval, Bruno; Augusto, Laurent; Monod, Hervé; Apeldoorn, van D.F.; Bouwman, A.F.; Yang, X.; Achat, D.L.; Chini, L.P.; Oost, van K.; Guenet, Bertrand; Wang, R.; Decharme, B.; Nesme, T.; Pellerin, S.

    2017-01-01

    Phosphorus (P) availability in soils limits crop yields in many regions of the World, while excess of soil P triggers aquatic eutrophication in other regions. Numerous processes drive the global spatial distribution of P in agricultural soils, but their relative roles remain unclear. Here, we

  13. Thermal Properties of Soils

    Science.gov (United States)

    1981-12-01

    plagio - clase feldspar and pyroxene. The tine fraction may Surface area and its effects contain the clay "sheet" minerals (i.e. kaolinite. illite...Pyroxene, Kaoliniwe Unified By By Ortho. Plagio . amphibole, Basic clay min. Hematite Soil Soil soil petrogr. X.ray clase clase and Igneous and clay and no

  14. Restoration of contaminated soils

    International Nuclear Information System (INIS)

    Miranda J, Jose Eduardo

    2009-01-01

    A great variety of techniques are used for the restoration of contaminated soils. The contamination is present by both organic and inorganic pollutants. Environmental conditions and soil characteristics should take into account in order to implement a remedial technique. The bioremediation technologies are showed as help to remove a variety of soil contaminants. (author) [es

  15. Soil burden by radionuclides

    International Nuclear Information System (INIS)

    Blum, W.E.H.; Wenzel, W.W.

    1989-01-01

    Natural radioactivity - half-lifes and radiation type of man-made nuclides, radionuclide behaviour in soils, effects on soil condition and soil functions are described. The only mode of decontamination is by decay and thus primarily dependent on the half-life of nuclides

  16. Soil life under stress

    NARCIS (Netherlands)

    Tobor-Kaplon, Maria Agnieszka

    2006-01-01

    In this thesis I studied how long-term soil contamination affects microbial populations and processes, ecosystem properties and functional stability. I also investigated which parameters are suitable as indicators of soil quality in long-term contaminated soils. I found that contamination had a

  17. Biogeochemistry of paddy soils

    NARCIS (Netherlands)

    Kögel-Knabner, I.; Amelung, W.; Cao, Z.; Fiedler, S.; Frenzel, P.; Jahn, R.; Kalbitz, K.; Kölbl, A.; Schloter, M.

    2010-01-01

    Paddy soils make up the largest anthropogenic wetlands on earth. They may originate from any type of soil in pedological terms, but are highly modified by anthropogenic activities. The formation of these Anthrosols is induced by tilling the wet soil (puddling), and the flooding and drainage regime

  18. ISRIC - World Soil Information

    NARCIS (Netherlands)

    Dent, D.L.

    2006-01-01

    ISRICWorld Soil Information is an independent foundation, funded by the Netherlands Government with a mandate to increase knowledge of the land, its soils in particular, and to support the sustainable use of land resources; in short, to help people understand soils. Its aims are to -Inform and

  19. Harvesting soil with potatoes

    DEFF Research Database (Denmark)

    Egelyng, Henrik

    2017-01-01

    Norwegian authorities demand soil leaving potato packing plants to be deposited as waste. Depositing soil from potato processing plants is associated with significant cost for Norwegian producers. Therefore CYCLE investigated potato soil harvesting from an innovation and socio-economic perspective....

  20. Total protein

    Science.gov (United States)

    ... page: //medlineplus.gov/ency/article/003483.htm Total protein To use the sharing features on this page, please enable JavaScript. The total protein test measures the total amount of two classes ...

  1. Proteins engineering

    International Nuclear Information System (INIS)

    2000-01-01

    At the - Departement d'Ingenierie et d'etudes de proteines (Deip) of the CEA more than seventy researchers are working hard to understand the function of proteins. For that they use the molecular labelling technique (F.M.)

  2. Whey Protein

    Science.gov (United States)

    ... reliable information about the safety of taking whey protein if you are pregnant or breast feeding. Stay on the safe side and avoid use. Milk allergy: If you are allergic to cow's milk, avoid using whey protein.

  3. Bioindication with soil microfauna

    International Nuclear Information System (INIS)

    Aescht, E.; Foissner, W.

    1992-01-01

    The state of a soil can be characterised through its inhabitant micro-, meso-, and macrofauna. For an appropriate assessment of soil quality at least one representative of each of these size categories should be studied (e.g. testacea, mites, earthworms). This contribution summarizes the insights gained from microscopic soil fauna in this context. The following practical examples are discussed: pesticides, organic and artificial fertilisers, soil compaction, ecological and conventional farming, recolonisation. The 'weighted cenosis index' represents a quantitative measure for the influence of anthropogenic activity on a soil. (orig.) [de

  4. Soil heavy metals

    Energy Technology Data Exchange (ETDEWEB)

    Sherameti, Irena [Jena Univ. (Germany). Inst. fuer Allgemeine Botanik und Pflanzenphysiologie; Varma, Ajit (eds.) [Amity Univ., Uttar Pradesh (India). Amity Inst. of Microbial Technology; Amity Science, Technology and Innovation Foundation, Noida, UP (India)

    2010-07-01

    Human activities have dramatically changed the composition and organisation of soils. Industrial and urban wastes, agricultural application and also mining activities resulted in an increased concentration of heavy metals in soils. How plants and soil microorganisms cope with this situation and the sophisticated techniques developed for survival in contaminated soils is discussed in this volume. The topics presented include: the general role of heavy metals in biological soil systems; the relation of inorganic and organic pollutions; heavy metal, salt tolerance and combined effects with salinity; effects on abuscular mycorrhizal and on saprophytic soil fungi; heavy metal resistance by streptomycetes; trace element determination of environmental samples; the use of microbiological communities as indicators; phytostabilization of lead polluted sites by native plants; effects of soil earthworms on removal of heavy metals and the remediation of heavy metal contaminated tropical land. (orig.)

  5. From soil in art towards Soil Art

    Science.gov (United States)

    Feller, C.; Landa, E. R.; Toland, A.; Wessolek, G.

    2015-02-01

    The range of art forms and genres dealing with soil is wide and diverse, spanning many centuries and artistic traditions, from prehistoric painting and ceramics to early Renaissance works in Western literature, poetry, paintings, and sculpture, to recent developments in cinema, architecture and contemporary art. Case studies focused on painting, installation, and cinema are presented with the view of encouraging further exploration of art about, in, with, or featuring soil or soil conservation issues, created by artists, and occasionally scientists, educators or collaborative efforts thereof.

  6. Soil Organic Carbon in the Soil Scapes of Southeastern Tanzania

    OpenAIRE

    Rossi, Joni

    2009-01-01

    Soil organic carbon (SOC) is well known to maintain several functions. On the one hand, being the major component of soil organic matter (SOM),it is a determinant of soil physical and chemical properties, an important proxy for soil biological activity and a measure of soil productivity. Land use management that will enhance soil carbon (C) levels is therefore important for farmers and land use planners, particularly in semiarid and sub-humid Africa where severe soil degradation and desertifi...

  7. Mass Transport within Soils

    Energy Technology Data Exchange (ETDEWEB)

    McKone, Thomas E.

    2009-03-01

    Contaminants in soil can impact human health and the environment through a complex web of interactions. Soils exist where the atmosphere, hydrosphere, geosphere, and biosphere converge. Soil is the thin outer zone of the earth's crust that supports rooted plants and is the product of climate and living organisms acting on rock. A true soil is a mixture of air, water, mineral, and organic components. The relative proportions of these components determine the value of the soil for agricultural and for other human uses. These proportions also determine, to a large extent, how a substance added to soil is transported and/or transformed within the soil (Spositio, 2004). In mass-balance models, soil compartments play a major role, functioning both as reservoirs and as the principal media for transport among air, vegetation, surface water, deeper soil, and ground water (Mackay, 2001). Quantifying the mass transport of chemicals within soil and between soil and atmosphere is important for understanding the role soil plays in controlling fate, transport, and exposure to multimedia pollutants. Soils are characteristically heterogeneous. A trench dug into soil typically reveals several horizontal layers having different colors and textures. As illustrated in Figure 1, these multiple layers are often divided into three major horizons: (1) the A horizon, which encompasses the root zone and contains a high concentration of organic matter; (2) the B horizon, which is unsaturated, lies below the roots of most plants, and contains a much lower organic carbon content; and (3) the C horizon, which is the unsaturated zone of weathered parent rock consisting of bedrock, alluvial material, glacial material, and/or soil of an earlier geological period. Below these three horizons lies the saturated zone - a zone that encompasses the area below ground surface in which all interconnected openings within the geologic media are completely filled with water. Similarly to the unsaturated

  8. Assessment the effect of homogenized soil on soil hydraulic properties and soil water transport

    Science.gov (United States)

    Mohawesh, O.; Janssen, M.; Maaitah, O.; Lennartz, B.

    2017-09-01

    Soil hydraulic properties play a crucial role in simulating water flow and contaminant transport. Soil hydraulic properties are commonly measured using homogenized soil samples. However, soil structure has a significant effect on the soil ability to retain and to conduct water, particularly in aggregated soils. In order to determine the effect of soil homogenization on soil hydraulic properties and soil water transport, undisturbed soil samples were carefully collected. Five different soil structures were identified: Angular-blocky, Crumble, Angular-blocky (different soil texture), Granular, and subangular-blocky. The soil hydraulic properties were determined for undisturbed and homogenized soil samples for each soil structure. The soil hydraulic properties were used to model soil water transport using HYDRUS-1D.The homogenized soil samples showed a significant increase in wide pores (wCP) and a decrease in narrow pores (nCP). The wCP increased by 95.6, 141.2, 391.6, 3.9, 261.3%, and nCP decreased by 69.5, 10.5, 33.8, 72.7, and 39.3% for homogenized soil samples compared to undisturbed soil samples. The soil water retention curves exhibited a significant decrease in water holding capacity for homogenized soil samples compared with the undisturbed soil samples. The homogenized soil samples showed also a decrease in soil hydraulic conductivity. The simulated results showed that water movement and distribution were affected by soil homogenizing. Moreover, soil homogenizing affected soil hydraulic properties and soil water transport. However, field studies are being needed to find the effect of these differences on water, chemical, and pollutant transport under several scenarios.

  9. Effects of natural and synthetic soil conditioners on soil moisture ...

    African Journals Online (AJOL)

    The efficacy of a natural soil conditioner, Coco-Peat (C-P), and synthetic soil conditioners, Terawet (T-200) and Teraflow (T-F), in improving soil moisture content were examined on five Ghanaian soil series (Akroso, Akuse, Amo, Hake and Oyarifa). In general, the water retention of T-200 and C-P treated soils were similar ...

  10. Modelling soil anaerobiosis from water retention characteristics and soil respiration

    NARCIS (Netherlands)

    Schurgers, G.; Dörsch, P.; Bakken, L.; Leffelaar, P.A.; Egil Haugen, L.

    2006-01-01

    Oxygen is a prerequisite for some and an inhibitor to other microbial functions in soils, hence the temporal and spatial distribution of oxygen within the soil matrix is crucial in soil biogeochemistry and soil biology. Various attempts have been made to model the anaerobic fraction of the soil

  11. Arsenic bioavailability in soils before and after soil washing: the use of Escherichia coli whole-cell bioreporters.

    Science.gov (United States)

    Yoon, Youngdae; Kang, Yerin; Chae, Yooeun; Kim, Sunghoon; Lee, Youngshim; Jeong, Seung-Woo; An, Youn-Joo

    2016-02-01

    We investigated the quantification of bioavailable arsenic in contaminated soils and evaluation of soil-washing processes in the aspect of bioavailability using a novel bacterial bioreporter developed in present study. The whole-cell bioreporter (WCB) was genetically engineered by fusing the promoter of nik operon from Escherichia coli and green fluorescent protein as a sensing domain and reporter domain. Among eight well-known hazardous heavy metals and metalloid, this system responded specifically to arsenic, thereby inferring association of As(III) with NikR inhibits the repression. Moreover, the response was proportional to the concentration of As(III), thereby it was capable to determine the amount of bioavailable arsenic quantitatively in contaminated soils. The bioavailable portion of arsenic was 5.9 (3.46-10.96) and 0.9 (0.27-1.74) % of total from amended and site soils, respectively, suggesting the bioavailability of arsenic in soils was related to the soil properties and duration of aging. On the other hand, only 1.37 (0.21-2.97) % of total arsenic was extracted into soil solutions and 19.88 (11.86-28.27) % of arsenic in soil solution was bioavailable. This result showed that the soluble arsenic is not all bioavailable and most of bioavailable arsenic in soils is water non-extractable. In addition, the bioavailable arsenic was increased after soil-washing while total amount was decreased, thereby suggesting the soil-washing processes release arsenic associated with soil materials to be bioavailable. Therefore, it would be valuable to have a tool to assess bioavailability and the bioavailability should be taken into consideration for soil remediation plans.

  12. Advances in soil dynamics

    DEFF Research Database (Denmark)

    Advances in Soil Dynamics, Volume 3, represents the culmination of the work undertaken by the Advances in Soil Dynamics Monograph Committee, PM-45-01, about 15 years ago to summarize important developments in this field over the last 35 years. When this project was initiated, the main goal...... was to abridge major strides made in the general area of soil dynamics during the sixties, seventies, and eighties. However, by about the mid-nineties soil dynamics research in the US and much of the developed world had come to a virtual standstill. Although significant progress was made prior to the mid......-nineties, we still do not have a sound fundamental knowledge of soil-machine and soil-plant interactions. It is the hope of the editors that these three volumes will provide a ready reference for much needed future research in this area....

  13. Soil-dithiocarbamate interactions

    International Nuclear Information System (INIS)

    Raghu, K.

    1980-01-01

    Soil is the ultimate repository of the pesticides applied for the control of plant pests and diseases. A variety of interactions like leaching, adsorption, chemical and microbial degradation etc take place between soil and pesticide. Results on work on two dialkyldithiocarbamates viz. thiram (tetramethylthiuram disulfide) and ziram (zinc dimethyldithiocarbamate) with respect to above interactions in soil are discussed and summarised. 35 S-labelled thiram and ziram were used in the studies. (author)

  14. Soil Management for Hardwood Production

    Science.gov (United States)

    W. M. Broadfoot; B. G. Blackmon; J. B. Baker

    1971-01-01

    Soil management is the key to successful hardwood management because soil properties are probably the most important determinants of forest productivity. Because of the lack of soil uniformity, however, many foresters have become frustrated with attempts to relate soil to satisfactory growth. Since soil scientists have been unable to predict site quality for trees in...

  15. Earthworms and Soil Pollutants

    Directory of Open Access Journals (Sweden)

    Kazuyoshi Tamae

    2011-11-01

    Full Text Available Although the toxicity of metal contaminated soils has been assessed with various bioassays, more information is needed about the biochemical responses, which may help to elucidate the mechanisms involved in metal toxicity. We previously reported that the earthworm, Eisenia fetida, accumulates cadmium in its seminal vesicles. The bio-accumulative ability of earthworms is well known, and thus the earthworm could be a useful living organism for the bio-monitoring of soil pollution. In this short review, we describe recent studies concerning the relationship between earthworms and soil pollutants, and discuss the possibility of using the earthworm as a bio-monitoring organism for soil pollution.

  16. Radioisotopes in soil science

    International Nuclear Information System (INIS)

    Kotur, S.C.

    2004-01-01

    Soils form a thin veneer of the Earth that sustain the entire flora and fauna of the terra firma. To that extent the soil as a natural resource is very precious and needs to be managed in a sustainable manner. The fate of degradation of pesticides in soil and build-up of heavy metals in the overall biosafety scenario is also studied gainfully using radioisotopes. Radioisotopes are a very potent tool in the hands of the Soil Scientists, perhaps, the most important among the peaceful applications in service of the mankind

  17. Microbiological soil regeneration

    International Nuclear Information System (INIS)

    Behrens, D.; Wiesner, J.

    1992-01-01

    The Interdiciplinary Task Force ''Environmental Biotechnology - Soil'' of DECHEMA aims to pool the knowledge potential of the Dechema study committees on environmental biotechnology and soil protection with a view to the advancement of microbiological soil decontamination techniques. This conference volume on the 9th expert meeting of Dechema on environmental protection subjects entitled ''Microbiological Soil Regeneration'', held on February 27th and 28th, 1991, and the subsequent compilation of results give an intermediate account of the ongoing work of the Dechema Task Force. (orig.) [de

  18. Soil physics and agriculture

    International Nuclear Information System (INIS)

    Dourado Neto, Durval; Reichardt, K.; Sparovek, G.

    2004-01-01

    The approach that integrates knowledge is very important in Agriculture, including farmers, extensionists, researchers and professors. The specialists, including the soil physicists, must have a global view of the crop production system. Therefore, their expertise can be useful for the society. The Essence of scientific knowledge is its practical application. The soil physics is a sub area of Agronomy. There are many examples of this specific subject related to Agriculture. This paper will focus, in general, the following cases: (i) erosion, environmental pollution and human health, (ii) plant population and distribution, soil fertility, evapo-transpiration and soil water flux density, and (iii) productivity, effective root depth, water deficit and yield

  19. Electrodialytic soil remediation

    DEFF Research Database (Denmark)

    Hansen, Henrik K.; Ottosen, Lisbeth M.; Hansen, Lene

    1997-01-01

    It is not possible for all heavy metal polluted soils to remediate it by an applied electric field alone. A desorbing agent must in different cases be added to the soil in order to make the process possible or to make it cost effective......It is not possible for all heavy metal polluted soils to remediate it by an applied electric field alone. A desorbing agent must in different cases be added to the soil in order to make the process possible or to make it cost effective...

  20. Soil microbial activities and its relationship with soil chemical ...

    African Journals Online (AJOL)

    The fields assessed are organically managed Soils (OMS), Inorganically Managed Soils (IMS) and an Uncultivated Land having grass coverage (ULS). Soil Microbial Respiration (SMR), Microbial Biomass Carbon (MBC), Microbial Biomass Nitrogen (MBN) and Microbial Biomass Phosphorus (MBP) were analyzed.

  1. Soil Survey Geographic (SSURGO) - Kinds and Distribution of Soils

    Data.gov (United States)

    California Natural Resource Agency — This data set is a digital soil survey and generally is the most detailed level of soil geographic data developed by the National Cooperative Soil Survey. The...

  2. Protein politics

    NARCIS (Netherlands)

    Vijver, Marike

    2005-01-01

    This study is part of the program of the interdisciplinary research group Profetas (protein foods, environment, technology and society). Profetas consists of technological, environmental and socio-economic research projects on protein food systems which result in the development of scenarios and

  3. Protein adhesives

    Science.gov (United States)

    Charles R. Frihart; Linda F. Lorenz

    2018-01-01

    Nature uses a wide variety of chemicals for providing adhesion internally (e.g., cell to cell) and externally (e.g., mussels to ships and piers). This adhesive bonding is chemically and mechanically complex, involving a variety of proteins, carbohydrates, and other compounds.Consequently,the effect of protein structures on adhesive properties is only partially...

  4. Tau protein

    DEFF Research Database (Denmark)

    Frederiksen, Jette Lautrup Battistini; Kristensen, Kim; Bahl, Jmc

    2011-01-01

    Background: Tau protein has been proposed as biomarker of axonal damage leading to irreversible neurological impairment in MS. CSF concentrations may be useful when determining risk of progression from ON to MS. Objective: To investigate the association between tau protein concentration and 14......-3-3 protein in the cerebrospinal fluid (CSF) of patients with monosymptomatic optic neuritis (ON) versus patients with monosymptomatic onset who progressed to multiple sclerosis (MS). To evaluate results against data found in a complete literature review. Methods: A total of 66 patients with MS and/or ON from...... the Department of Neurology of Glostrup Hospital, University of Copenhagen, Denmark, were included. CSF samples were analysed for tau protein and 14-3-3 protein, and clinical and paraclinical information was obtained from medical records. Results: The study shows a significantly increased concentration of tau...

  5. Soil treatment engineering

    Science.gov (United States)

    Ivica, Kisic; Zeljka, Zgorelec; Aleksandra, Percin

    2017-10-01

    Soil is loose skin of the Earth, located between the lithosphere and atmosphere, which originated from parent material under the influence of pedogenetic processes. As a conditionally renewable natural resource, soil has a decisive influence on sustainable development of global economy, especially on sustainable agriculture and environmental protection. In recent decades, a growing interest prevails for non-production soil functions, primarily those relating to environmental protection. It especially refers to protection of natural resources whose quality depends directly on soil and soil management. Soil contamination is one of the most dangerous forms of soil degradation with the consequences that are reflected in virtually the entire biosphere, primarily at heterotrophic organisms, and also at mankind as a food consumer. Contamination is correlated with the degree of industrialization and intensity of agrochemical usage. It is typically caused by industrial activity, agricultural chemicals or improper disposal of waste. The negative effects caused by pollution are undeniable: reduced agricultural productivity, polluted water sources and raw materials for food are only a few of the effects of soil degradation, while almost all human diseases (excluding AIDS) may be partly related to the transport of contaminants, in the food chain or the air, to the final recipients - people, plants and animals. The remediation of contaminated soil is a relatively new scientific field which is strongly developing in the last 30 years and becoming a more important subject. In order to achieve quality remediation of contaminated soil it is very important to conduct an inventory as accurately as possible, that is, to determine the current state of soil contamination.

  6. Soil/Rock Properties Laboratory

    Data.gov (United States)

    Federal Laboratory Consortium — Soil/Rock Properties LaboratoryLocation: Spokane SiteThe Soil/Rock Properties Laboratory is contained in the soils bay, a 4,700 sq. ft. facility that provides space...

  7. Amendment trials for bioremediation of sodium and chloride contaminated soils

    Energy Technology Data Exchange (ETDEWEB)

    Wilson, D. [Western Alfalfa Milling Co. Ltd., Norquay, SK (Canada)

    2005-06-30

    Details of a soil amendment experiment was presented. Soil samples from sodium and chloride contaminated soil were taken from a site located in southeastern Alberta. Soil amendments included high protein dehydrated alfalfa pellets, 2 types of Zeolite, and used coconut coir. The aim of the study was to find an effective in-situ method of remediating the soil while establishing the highest possible plant biomass. Preliminary trial data indicated a strong trend for high plant protein pellets to increase plant productivity on sodium and chloride contaminated soil. The addition of alfalfa increased plant height and stem diameter, as well as leaf width, which increased incrementally with higher volumes of alfalfa. Equivalent rates of .5 MT to 4 MT per acre application rates were used in the trial. Coconut coir was used at a rate of 30 per cent of the volume of the growing medium and also showed increased growth. An experiment was conducted using harvested plant matter from the samples to determine the effect of the 3 amendments on sodium uptake by the plants. Results showed that the sodium uptake significantly increased with the application of soil amendments, particularly when alfalfa pellets were applied, with percentages of sodium found in the plant tissue almost twice as high as percentages found in the control sample. Sodium levels also increased in the plant tissues where coconut coir was used, although to a lesser degree than levels found in plants grown with the alfalfa amended soils. Zeolite did not perform as well on its own. However, it was noted that previous trials have shown good performance when Zeolite was mixed into sodium/chloride contaminated soils and combined with water filtration. It was concluded that the soil amendments improved plant growth, and increased the sodium uptake by plants. The consortium is pursuing industry support to plan larger field studies in the 2006 season. 2 tabs., 5 figs.

  8. Enzymatic Digestion of Chronic Wasting Disease Prions Bound to Soil

    Science.gov (United States)

    SAUNDERS, SAMUEL E.; BARTZ, JASON C.; VERCAUTEREN, KURT C.; BARTELT-HUNT, SHANNON L.

    2010-01-01

    Chronic wasting disease (CWD) and sheep scrapie can be transmitted via indirect environmental routes, and it is known that soil can serve as a reservoir of prion infectivity. Given the strong interaction between the prion protein (PrP) and soil, we hypothesized that binding to soil enhances prion resistance to enzymatic digestion, thereby facilitating prion longevity in the environment and providing protection from host degradation. We characterized the performance of a commercially available subtilisin enzyme, the Prionzyme, to degrade soil-bound and unbound CWD and HY TME PrP as a function of pH, temperature, and treatment time. The subtilisin enzyme effectively degraded PrP adsorbed to a wide range of soils and soil minerals below the limits of detection. Signal loss occurred rapidly at high pH (12.5) and within 7 d under conditions representative of the natural environment (pH 7.4, 22°C). We observed no apparent difference in enzyme effectiveness between bound and unbound CWD PrP. Our results show that although adsorbed prions do retain relative resistance to enzymatic digestion compared with other brain homogenate proteins, they can be effectively degraded when bound to soil. Our results also suggest a topical application of a subtilisin enzyme solution may be an effective decontamination method to limit disease transmission via environmental ‘hot spots’ of prion infectivity. PMID:20450190

  9. Soil-wood interactions

    NARCIS (Netherlands)

    Wal, van der Annemieke; klein Gunnewiek, Paulien; Boer, de Wietse

    2017-01-01

    Wood-inhabiting fungi may affect soil fungal communities directly underneath decaying wood via their exploratory hyphae. In addition, differences in wood leachates between decaying tree species may influence soil fungal communities. We determined the composition of fungi in 4-yr old decaying logs

  10. Soil and vegetation surveillance

    Energy Technology Data Exchange (ETDEWEB)

    Antonio, E.J.

    1995-06-01

    Soil sampling and analysis evaluates long-term contamination trends and monitors environmental radionuclide inventories. This section of the 1994 Hanford Site Environmental Report summarizes the soil and vegetation surveillance programs which were conducted during 1994. Vegetation surveillance is conducted offsite to monitor atmospheric deposition of radioactive materials in areas not under cultivation and onsite at locations adjacent to potential sources of radioactivity.

  11. Soils, peatlands, and biomonitoring

    Science.gov (United States)

    James Doolittle

    2009-01-01

    Soils are three-dimensional (3D) natural bodies conSlStmg of unconsolidated mineral and organic materials that form a continuous blanket over most of the earth's land sUlface. At all sca les of measurements, soils are exceedingly complex and variable in biological, chemical, physical, mineralogical, and electromagnetic properties....

  12. Scour in cohesive soils

    Science.gov (United States)

    2015-05-01

    This study of scour in cohesive soils had two objectives. The first was to introduce and demonstrate a new ex situ erosion testing device (ESTD) that can mimic the near-bed flow of open channels to erode cohesive soils within a specified range of she...

  13. Contaminated soil concrete blocks

    NARCIS (Netherlands)

    de Korte, A.C.J.; Brouwers, Jos; Limbachiya, Mukesh C.; Kew, Hsein Y.

    2009-01-01

    According to Dutch law the contaminated soil needs to be remediated or immobilised. The main focus in this article is the design of concrete blocks, containing contaminated soil, that are suitable for large production, financial feasible and meets all technical and environmental requirements. In

  14. The Global Soil Partnership

    Science.gov (United States)

    Montanarella, Luca

    2015-07-01

    The Global Soil Partnership (GSP) has been established, following an intensive preparatory work of the Food and Agriculture Organization of the United Nations (FAO) in collaboration with the European Commission (EC), as a voluntary partnership coordinated by the FAO in September 2011 [1]. The GSP is open to all interested stakeholders: Governments (FAO Member States), Universities, Research Organizations, Civil Society Organizations, Industry and private companies. It is a voluntary partnership aiming towards providing a platform for active engagement in sustainable soil management and soil protection at all scales: local, national, regional and global. As a “coalition of the willing” towards soil protection, it attempts to make progress in reversing soil degradation with those partners that have a genuine will of protecting soils for our future generations. It openly aims towards creating an enabling environment, despite the resistance of a minority of national governments, for effective soil protection in the large majority of the countries that are genuinely concerned about the rapid depletion of their limited soil resources.

  15. Complex conductivity of soils

    NARCIS (Netherlands)

    Revil, A.; Coperey, A.; Shao, Z.; Florsch, N.; Fabricus, I.L.; Deng, Y.; Delsman, J.R.; Pauw, P.S.; Karaoulis, M.; Louw, P.G.B. de; Baaren, E.S. van; Dabekaussen, W.; Menkovic, A.; Gunnink, J.L.

    2017-01-01

    The complex conductivity of soils remains poorly known despite the growing importance of this method in hydrogeophysics. In order to fill this gap of knowledge, we investigate the complex conductivity of 71 soils samples (including four peat samples) and one clean sand in the frequency range 0.1 Hz

  16. Soil Health Educational Resources

    Science.gov (United States)

    Hoorman, James J.

    2015-01-01

    Soil health and cover crops are topics of interest to farmers, gardeners, and students. Three soil health and cover crop demonstrations provide educational resources. Demonstrations one outlines two educational cover crop seed displays, including the advantages and disadvantages. Demonstration two shows how to construct and grow a cover crop root…

  17. The soil life cycle

    NARCIS (Netherlands)

    Leeuwen, van J.P.

    2016-01-01

    Soil is one of the most important natural resource for life on Earth and provides important ecosystem services, such as food production, carbon sequestration, water regulation and contaminant attenuation. Soil quality, defined as the soil’s ability to provide these services, is drastically

  18. Creative Soil Conservation

    Science.gov (United States)

    Smith, Martha

    2010-01-01

    Take plant lessons outdoors with this engaging and inquiry-based activity in which third-grade students learn how to apply soil conservation methods to growing plants. They also collect data and draw conclusions about the effectiveness of their method of soil conservation. An added benefit to this activity is that the third-grade students played…

  19. Radioiodine in soils

    International Nuclear Information System (INIS)

    Szabova, T.

    1981-01-01

    Behaviour was studied of radioiodine in different soil subtypes sampled in the vicinity of the A-1 nuclear power plant at Jaslovske Bohunice. Radioiodine sorption is mainly affected by the amount of humus and by the clay fraction of soil. The highest sorption was recorded for meadow chernozem and the lowest for rendzina soils. At the same pH, soils with a higher level of organic matter adsorb more radioiodine. Upon applying radioiodate in soil samples, reduction to iodide takes place. Under the action of anions, radioiodine sorption decreases, the effect decreasing as follows: H 2 PO 4 - >SO 2- >Cl - >NO 3 - . The highest desorption was caused by 0.1 N NaOH solution. (author)

  20. Climate-smart soils

    Science.gov (United States)

    Paustian, Keith; Lehmann, Johannes; Ogle, Stephen; Reay, David; Robertson, G. Philip; Smith, Pete

    2016-04-01

    Soils are integral to the function of all terrestrial ecosystems and to food and fibre production. An overlooked aspect of soils is their potential to mitigate greenhouse gas emissions. Although proven practices exist, the implementation of soil-based greenhouse gas mitigation activities are at an early stage and accurately quantifying emissions and reductions remains a substantial challenge. Emerging research and information technology developments provide the potential for a broader inclusion of soils in greenhouse gas policies. Here we highlight ‘state of the art’ soil greenhouse gas research, summarize mitigation practices and potentials, identify gaps in data and understanding and suggest ways to close such gaps through new research, technology and collaboration.

  1. Electrodialytic soil remediation

    DEFF Research Database (Denmark)

    Karlsmose, Bodil; Ottosen, Lisbeth M.; Hansen, Lene

    1999-01-01

    The paper gives an overview of how heavy metals can be found in the soil and the theory of electrodialytic remediation. Basically electrodialytic remediation works by passing electric current through the soil, and the heavy metals in ionic form will carry some of the current. Ion-exchange membranes...... prevents the protons and the hydroxides ions from the electrode processes to enter the soil. The heavy metals are collected in a concentration compartment, which is separated from the soil by ion-exchange membranes. Examples from remediation experiments are shown, and it is demonstrated that it is possible...... to remediate soil polluted with heavy metals be this method. When adding desorbing agents or complexing agents, chosing the right current density, electrolyte and membranes, the proces can be optimised for a given remediation situation. Also electroosmosis is influencing the system, and if extra water...

  2. Managing soil natural capital

    DEFF Research Database (Denmark)

    Cong, Ronggang; Termansen, Mette; Brady, Mark

    2017-01-01

    Farmers are exposed to substantial weather and market related risks. Rational farmers seek to avoid large losses. Future climate change and energy price fluctuations therefore make adaptating to increased risks particularly important for them. Managing soil natural capital—the capacity of the soil...... to generate ecosystem services of benefit to farmers—has been proven to generate the double dividend: increasing farm profit and reducing associated risk. In this paper we explore whether managing soil natural capital has a third dividend: reducing the downside risk (increasing the positive skewness of profit......). This we refer to as the prudence effect which can be viewed as an adaptation strategy for dealing with future uncertainties through more prudent management of soil natural capital. We do this by developing a dynamic stochastic portfolio model to optimize the stock of soil natural capital—as indicated...

  3. The Changing Model of Soil

    Science.gov (United States)

    Richter, D. D.; Yaalon, D.

    2012-12-01

    The contemporary genetic model of soil is changing rapidly in response to advances in soil science and to human and environmental forcings in the 21st century (Richter and Yaalon, 2012). Three ongoing changes in the model of soil include that: (1) lower soil boundaries are much deeper than the solum, historically the O to B horizons, (2) most soils are polygenetic paleosols, products of soil-forming processes that have ranged widely over soils' lifetimes, and (3) soils are globally human-natural bodies, no longer natural bodies. Together, these changes in the model of soil mean that human forcings are a global wave of soil polygenesis altering fluxes of matter and energy and transforming soil thermodynamics as potentially very deep systems. Because soils are non-linear systems resulting from high-order interactions of physics, chemistry, and biology, trajectories of how human forcings alter soils over decades are not readily predictable and require long-term soil observations. There is much to learn about how soils are changing internally as central components of management systems and externally in relation to wider environments. To be critical, research has been remarkably superficial in studies of soil, reductionist in approach, and lacking in time-series observations of responses to soil management. While this criticism may sound negative, it creates significant opportunities for contemporary soil scientists.

  4. Cultural Patterns of Soil Understanding

    Science.gov (United States)

    Patzel, Nikola; Feller, Christian

    2017-04-01

    Living soil supports all terrestrial ecosystems. The only global threat to earth's soils comes from human societies' land use and resource consuming activities. Soil perception and understanding by soil scientists are mainly drawn from biophysical parameters and found within Cartesian rationality, and not, or much less consciously from its rather intangible cultural dimension. But nevertheless, human soil perception, soil awareness, and soil relation are a cultural phenomenon, too. Aiming at soil awareness and education, it is of first order importance for the soil science community and the IUSS to study, discuss and communicate also about the cultural perceptions and representations of soil. For any society, cultural patterns in their relation to soil encompass: (i) General culturally underlying structures like (religious or 'secular') myths and belief systems. (ii) The personal, individual relation to/with and behaviour towards soil. This includes implicit concepts of soil being part integral concepts of landscape because the large majority of humans don't see soil as a distinct object. This communication would be to make evident: (i) the importance of cultural patterns and psychic/psychological background concerning soil, by case studies and overviews on different cultural areas, (ii) the necessity to develop reflections on this topic as well to communicate about soil with large public, as to raise awareness soil scientists to the cultural dimension of soils. A working group was recently founded at IUSS (Division 4) on this topic.

  5. Relaxometry in soil science

    Science.gov (United States)

    Schaumann, G. E.; Jaeger, F.; Bayer, J. V.

    2009-04-01

    NMR relaxometry is a sensitive, informative and promising method to study pore size distribution in soils as well as many kinds of soil physicochemical processes, among which are wetting, swelling or changes in the macromolecular status. Further, it is a very helpful method to study interactions between molecules in soil organic matter and it can serve to study the state of binding of water or organic chemicals to soil organic matter. The method of Relaxometry excite the nuclei of interest and their relaxation kinetics are observed. The relaxation time is the time constant of this first order relaxation process. Most applications of relaxometry concentrate on protons, addressing water molecules or H-containing organic molecules. In this context, 1H-NMR relaxometry may be used as an analysis method to determine water uptake characteristics of soils, thus gaining information about water distribution and mobility as well as pore size distribution in wet and moist samples. Additionally, it can also serve as a tool to study mobility of molecular segments in biopolymers. Principally, relaxometry is not restricted to protons. In soil science, relaxometry is also applied using deuterium, xenon and other nuclei to study pore size distribution and interactions. The relaxation time depends on numerous parameters like surface relaxivity, diffusion and interactions between nuclei as well as between nuclei and the environment. One- and two-dimensional methods address the relation between relaxation time and diffusion coefficients and can give information about the interconnectivity of pores. More specific information can be gained using field cycling techniques. Although proton NMR relaxometry is a very promising method in soil science, it has been applied scarcely up to now. It was used to assess changes in molecular rigidity of humic substances. A very recent study shows the potential of NMR relaxometry to assess the pore size distribution of soils in a fast and non

  6. Soil invertebrates as bioindicators of urban soil quality

    International Nuclear Information System (INIS)

    Santorufo, Lucia; Van Gestel, Cornelis A.M.; Rocco, Annamaria; Maisto, Giulia

    2012-01-01

    This study aimed at relating the abundance and diversity of invertebrate communities of urban soils to chemical and physical soil characteristics and to identify the taxa most sensitive or tolerant to soil stressors. The invertebrate community of five urban soils in Naples, Italy, was sampled. To assess soil quality invertebrate community indices (Shannon, Simpson, Menhinick and Pielou indices), Acarina/Collembola ratios, and the soil biological quality index (QBS) were calculated. The chemical and physical characteristics of the soils strongly differed. Abundance rather than taxa richness of invertebrates were more affected by soil characteristics. The community was more abundant and diverse in the soils with high organic matter and water content and low metal (Cu, Pb, Zn) concentrations. The taxa more resistant to the urban environment included Acarina, Enchytraeids, Collembola and Nematoda. Collembolans appeared particularly sensitive to changing soil properties. Among the investigated indices, QBS seems most appropriate for soil quality assessment. - Highlights: ► The abundance and diversity of invertebrate communities was related to properties and metal contents of urban soils. ► Several (biodiversity) indices were calculated and compared to evaluate soil quality. ► Metal contamination affected invertebrate density and diversity. ► The taxa more tolerant to metal contamination were Acarina, Enchytraeids, Collembola and Nematoda. ► The soil biological quality index QBS index was most appropriate for soil quality assessment. - Soil metal contamination negatively affected soil invertebrate abundance and diversity.

  7. Why is the influence of soil macrofauna on soil structure only considered by soil ecologists ?

    OpenAIRE

    Bottinelli, N.; Jouquet, Pascal; Capowiez, Y.; Podwojewski, Pascal; Grimaldi, Michel; Peng, X.

    2015-01-01

    These last twenty years have seen the development of an abundant literature on the influence of soil macrofauna on soil structure. Amongst these organisms, earthworms, termites and ants are considered to play a key role in regulating the physical, chemical and microbiological properties of soils. Due to these influential impacts, soil ecologists consider these soil macro-invertebrates as ‘soil engineers’ and their diversity and abundance are nowadays considered as relevant bioindi...

  8. Effects of straw mulching on soil evaporation during the soil thawing ...

    Indian Academy of Sciences (India)

    26

    Keywords: straw mulching, soil water evaporation, soil thawing period, freezing depth, soil liquid water .... moisture and the soil water evaporation process. The Songnen Plain ...... soils on soil infiltration and evaporation: Water Sci. Technol.

  9. Soil bacteria for remediation of polluted soils

    Energy Technology Data Exchange (ETDEWEB)

    Springael, D; Bastiaens, L; Carpels, M; Mergaey, M; Diels, L

    1996-09-18

    Soil bacteria, specifically adapted to contaminated soils, may be used for the remediation of polluted soils. The Flemish research institute VITO has established a collection of bacteria, which were isolated from contaminated areas. This collection includes microbacteria degrading mineral oils (Pseudomonas sp., Acinetobacter sp. and others), microbacteria degrading polycyclic aromatic hydrocarbons (genera Sphingomonas and Mycobacterium), microbacteria degrading polychlorobiphenyls (genus Ralstonia and strains related to beta-Proteobacteria), and metal resistant bacteria with plasmid borne resistances to Cd, Zn, Ni, Co, Cu, Hg, and Cr. Bench-scale reactors were developed to investigate the industrial feasibility of bioremediation. Batch Stirred Tank Reactors were used to evaluate the efficiency of oil degraders. Soils, contaminated with non-ferrous metals, were treated using a Bacterial Metal Slurry Reactor. It was found that the reduction of the Cd concentration may vary strongly from sample to sample: reduction factors vary from 95 to 50%. Is was shown that Cd contained in metallic sinter and biologically unavailable Cd could not be removed.

  10. Humic substances interfere with detection of pathogenic prion protein

    Science.gov (United States)

    Smith, Christen B.; Booth, Clarissa J.; Wadzinski, Tyler J.; Legname, Giuseppe; Chappell, Rick; Johnson, Christopher J.; Pedersen, Joel A.

    2014-01-01

    Studies examining the persistence of prions (the etiological agent of transmissible spongiform encephalopathies) in soil require accurate quantification of pathogenic prion protein (PrPTSE) extracted from or in the presence of soil particles. Here, we demonstrate that natural organic matter (NOM) in soil impacts PrPTSE detection by immunoblotting. Methods commonly used to extract PrPTSE from soils release substantial amounts of NOM, and NOM inhibited PrPTSE immunoblot signal. The degree of immunoblot interference increased with increasing NOM concentration and decreasing NOM polarity. Humic substances affected immunoblot detection of prion protein from both deer and hamsters. We also establish that after interaction with humic acid, PrPTSE remains infectious to hamsters inoculated intracerebrally, and humic acid appeared to slow disease progression. These results provide evidence for interactions between PrPTSE and humic substances that influence both accurate measurement of PrPTSE in soil and disease transmission.

  11. BOREAS TE-01 SSA Soil Lab Data

    Data.gov (United States)

    National Aeronautics and Space Administration — This data set provides a set of soil properties for the SSA. The soil samples were collected at sets of soil pits. Major soil properties include soil horizon; dry...

  12. BOREAS TE-01 SSA Soil Lab Data

    Data.gov (United States)

    National Aeronautics and Space Administration — ABSTRACT: This data set provides a set of soil properties for the SSA. The soil samples were collected at sets of soil pits. Major soil properties include soil...

  13. Transport of Pathogen Surrogates in Soil Treatment Units: Numerical Modeling

    Directory of Open Access Journals (Sweden)

    Ivan Morales

    2014-04-01

    Full Text Available Segmented mesocosms (n = 3 packed with sand, sandy loam or clay loam soil were used to determine the effect of soil texture and depth on transport of two septic tank effluent (STE-borne microbial pathogen surrogates—green fluorescent protein-labeled E. coli (GFPE and MS-2 coliphage—in soil treatment units. HYDRUS 2D/3D software was used to model the transport of these microbes from the infiltrative surface. Mesocosms were spiked with GFPE and MS-2 coliphage at 105 cfu/mL STE and 105–106 pfu/mL STE, respectively. In all soils, removal rates were >99.99% at 25 cm. The transport simulation compared (1 optimization; and (2 trial-and-error modeling approaches. Only slight differences between the transport parameters were observed between these approaches. Treating both the die-off rates and attachment/detachment rates as variables resulted in an overall better model fit, particularly for the tailing phase of the experiments. Independent of the fitting procedure, attachment rates computed by the model were higher in sandy and sandy loam soils than clay, which was attributed to unsaturated flow conditions at lower water content in the coarser-textured soils. Early breakthrough of the bacteria and virus indicated the presence of preferential flow in the system in the structured clay loam soil, resulting in faster movement of water and microbes through the soil relative to a conservative tracer (bromide.

  14. Physical soil quality indicators for monitoring British soils

    Science.gov (United States)

    Corstanje, Ron; Mercer, Theresa G.; Rickson, Jane R.; Deeks, Lynda K.; Newell-Price, Paul; Holman, Ian; Kechavarsi, Cedric; Waine, Toby W.

    2017-09-01

    Soil condition or quality determines its ability to deliver a range of functions that support ecosystem services, human health and wellbeing. The increasing policy imperative to implement successful soil monitoring programmes has resulted in the demand for reliable soil quality indicators (SQIs) for physical, biological and chemical soil properties. The selection of these indicators needs to ensure that they are sensitive and responsive to pressure and change, e.g. they change across space and time in relation to natural perturbations and land management practices. Using a logical sieve approach based on key policy-related soil functions, this research assessed whether physical soil properties can be used to indicate the quality of British soils in terms of their capacity to deliver ecosystem goods and services. The resultant prioritised list of physical SQIs was tested for robustness, spatial and temporal variability, and expected rate of change using statistical analysis and modelling. Seven SQIs were prioritised: soil packing density, soil water retention characteristics, aggregate stability, rate of soil erosion, depth of soil, soil structure (assessed by visual soil evaluation) and soil sealing. These all have direct relevance to current and likely future soil and environmental policy and are appropriate for implementation in soil monitoring programmes.

  15. Describing Soils: Calibration Tool for Teaching Soil Rupture Resistance

    Science.gov (United States)

    Seybold, C. A.; Harms, D. S.; Grossman, R. B.

    2009-01-01

    Rupture resistance is a measure of the strength of a soil to withstand an applied stress or resist deformation. In soil survey, during routine soil descriptions, rupture resistance is described for each horizon or layer in the soil profile. The lower portion of the rupture resistance classes are assigned based on rupture between thumb and…

  16. Combination of soil classification and some selected soil properties ...

    African Journals Online (AJOL)

    The advantage in the combined use of soil classification and top soil analysis for explaining crop yield variation was examined. Soil properties and yields of maize (Zea mays L) on different soil types were measured on farmers' fields for 2 years. Yield prediction improved from 2 per cent at the Order and Association levels to ...

  17. Physical soil quality indicators for monitoring British soils

    Directory of Open Access Journals (Sweden)

    R. Corstanje

    2017-09-01

    Full Text Available Soil condition or quality determines its ability to deliver a range of functions that support ecosystem services, human health and wellbeing. The increasing policy imperative to implement successful soil monitoring programmes has resulted in the demand for reliable soil quality indicators (SQIs for physical, biological and chemical soil properties. The selection of these indicators needs to ensure that they are sensitive and responsive to pressure and change, e.g. they change across space and time in relation to natural perturbations and land management practices. Using a logical sieve approach based on key policy-related soil functions, this research assessed whether physical soil properties can be used to indicate the quality of British soils in terms of their capacity to deliver ecosystem goods and services. The resultant prioritised list of physical SQIs was tested for robustness, spatial and temporal variability, and expected rate of change using statistical analysis and modelling. Seven SQIs were prioritised: soil packing density, soil water retention characteristics, aggregate stability, rate of soil erosion, depth of soil, soil structure (assessed by visual soil evaluation and soil sealing. These all have direct relevance to current and likely future soil and environmental policy and are appropriate for implementation in soil monitoring programmes.

  18. Iodine in soil

    International Nuclear Information System (INIS)

    Johanson, Karl Johan

    2000-12-01

    A literature study of the migration and the appearance of iodine isotopes in the bio-sphere particularly in soil is presented. Some important papers in the field of iodine appearance in soil and the appearance of 129 I in the surroundings of reprocessing plants are discussed. The most important conclusions are: 1. Iodine binds to organic matter in the soil and also to some oxides of aluminium and iron. 2. If the iodine is not bound to the soil a large fraction of added 129 I is volatilized after a rather short period. 3. The binding and also the volatilisation seems to be due to biological activity in the soil. It may take place within living microorganisms or by external enzymes excreted from microorganisms. 4. Due to variations in the composition of soil there may be a large variation in the distribution of 129 I in the vertical profile of soil - usually most of the 129 I in the upper layer - which also results in large variations in the 129 I uptake to plants

  19. Climate Strategic Soil Management

    Directory of Open Access Journals (Sweden)

    Rattan Lal

    2014-02-01

    Full Text Available The complex and strong link between soil degradation, climate change and food insecurity is a global challenge. Sustainable agricultural systems must be integral to any agenda to address climate change and variability, improve renewable fresh water supply and quality, restore degraded soils and ecosystems and advance food security. These challenges are being exacerbated by increasing population and decreasing per capita arable land area and renewable fresh water supply, the increasing frequency of extreme events, the decreasing resilience of agroecosystems, an increasing income and affluent lifestyle with growing preference towards meat-based diet and a decreasing soil quality and use efficiency of inputs. Reversing these downward spirals implies the implementation of proven technologies, such as conservation agriculture, integrated nutrient management, precision agriculture, agroforestry systems, etc. Restoration of degraded soil and desertified ecosystems and the creation of positive soil and ecosystem C budgets are important. Urban agriculture and green roofs can reduce the energy footprint of production chains for urban and non-urban areas and enhance the recycling of by-products. Researchable priorities include sustainable land use and soil/water management options, judicious soil governance and modus operandi towards payments to land managers for the provisioning of ecosystem services.

  20. Radon emanation from soils

    International Nuclear Information System (INIS)

    Markkanen, M.; Arvela, H.

    1992-01-01

    The results of gamma spectrometric sample measurements of radon ( 222 Rn) emanation coefficients and radium concentrations ( 226 Ra) from about 800 Finnish soil samples are presented. The radon emanation rate was measured in about 400 soil samples, using radon-tight cans and Lucas cells. The effects of water content and temperature on radon emanation were investigated, using various samples of different soil types. Radon emanation and the effect of water content on radon emanation were investigated separately for different grain sizes (samples of till). The results provide some information on radon emanation in different soil types and relate emanation in laboratory conditions to conditions in ground soil. In routine measurements of radon emanation from soil samples, use of a 5% water content was considered advisable. The correction coefficients of radon emanation varied between 0.3 and 1.5, depending on the water content and soil type. At 5% water content, hardly any difference was found between radon emanation at temperatures of 20 and 1 o C. Radon emanation was found to be an inverse function of grain sizes larger than 0.5 mm in diameter. (author)

  1. Soil washing treatability study

    International Nuclear Information System (INIS)

    Krstich, M.

    1995-12-01

    Soil washing was identified as a viable treatment process option for remediating soil at the FEMP Environmental Management Project (FEMP). Little information relative to the specific application and potential effectiveness of the soil washing process exists that applies to the types of soil at the FEMP. To properly evaluate this process option in conjunction with the ongoing FEMP Remedial Investigation/Feasibility Study (RI/FS), a treatability testing program was necessary to provide a foundation for a detailed technical evaluation of the viability of the process. In August 1991, efforts were initiated to develop a work plan and experimental design for investigating the effectiveness of soil washing on FEMP soil. In August 1992, the final Treatability Study Work Plan for Operable Unit 5: Soil Washing (DOE 1992) was issued. This document shall be referenced throughout the remainder of this report as the Treatability Study Work Plan (TSWP). The purpose of this treatability study was to generate data to support initial screening and the detailed analysis of alternatives for the Operable Unit 5 FS

  2. Iodine in soil

    Energy Technology Data Exchange (ETDEWEB)

    Johanson, Karl Johan [Swedish Univ. of Agricultural Sciences, Uppsala (Sweden). Dept. of Forest Mycology and Pathology

    2000-12-01

    A literature study of the migration and the appearance of iodine isotopes in the bio-sphere particularly in soil is presented. Some important papers in the field of iodine appearance in soil and the appearance of {sup 129}I in the surroundings of reprocessing plants are discussed. The most important conclusions are: 1. Iodine binds to organic matter in the soil and also to some oxides of aluminium and iron. 2. If the iodine is not bound to the soil a large fraction of added {sup 129}I is volatilized after a rather short period. 3. The binding and also the volatilisation seems to be due to biological activity in the soil. It may take place within living microorganisms or by external enzymes excreted from microorganisms. 4. Due to variations in the composition of soil there may be a large variation in the distribution of {sup 129}I in the vertical profile of soil - usually most of the {sup 129}I in the upper layer - which also results in large variations in the {sup 129}I uptake to plants.

  3. Parameterization of radiocaesium soil-plant transfer using soil characteristics

    International Nuclear Information System (INIS)

    Konoplev, A. V.; Drissner, J.; Klemt, E.; Konopleva, I. V.; Zibold, G.

    1996-01-01

    A model of radionuclide soil-plant transfer is proposed to parameterize the transfer factor by soil and soil solution characteristics. The model is tested with experimental data on the aggregated transfer factor T ag and soil parameters for 8 forest sites in Baden-Wuerttemberg. It is shown that the integral soil-plant transfer factor can be parameterized through radiocaesium exchangeability, capacity of selective sorption sites and ion composition of the soil solution or the water extract. A modified technique of (FES) measurement for soils with interlayer collapse is proposed. (author)

  4. Soil washing results for mixed waste pond soils at Hanford

    International Nuclear Information System (INIS)

    Gerber, M.A.; Freeman, H.D.; Baker, E.G.; Riemath, W.F.

    1991-01-01

    Soil washing technology was assessed as a means for remediating soil contaminated with mixed wastes primarily composed of heavy metals and radionuclides. The soils at the US Department of Energy's Hanford Site are considered suitable for soil washing because of their relatively low quantities of silt and clay. However, in a limited number of soil washing experiments using soils from different locations in the north pond of the 300 Area, the degree of decontamination achieved for the coarse fraction of the soil varied considerably. Part of this variation appears to be due to the presence of a discrete layer of contaminated sediment found in some of the samples

  5. Development of soil taxation and soil classification as furthered by the Austrian Soil Science Society

    Science.gov (United States)

    Baumgarten, Andreas

    2013-04-01

    Soil taxation and soil classification are important drivers of soil science in Austria. However, the tasks are quite different: whereas soil taxation aims at the evaluation of the productivity potential of the soil, soil classification focusses on the natural development and - especially nowadays - on functionality of the soil. Since the foundation of the Austrian Soil Science Society (ASSS), representatives both directions of the description of the soil have been involved in the common actions of the society. In the first years it was a main target to improve and standardize field descriptions of the soil. Although both systems differ in the general layout, the experts should comply with identical approaches. According to this work, a lot of effort has been put into the standardization of the soil classification system, thus ensuring a common basis. The development, state of the art and further development of both classification and taxation systems initiated and carried out by the ASSS will be shown.

  6. Influence of Soil Humic and Fulvic Acid on the Activity and Stability of Lysozyme and Urease

    NARCIS (Netherlands)

    Li, Yan; Tan, WenFeng; Koopal, Luuk K.; Wang, MingXia; Liu, Fan; Norde, Willem

    2013-01-01

    Humic substances (HS), including humic acids (HA) and fulvic acids (FA), are important components of soil systems. HS form strong complexes with oppositely charged proteins, which will lead to changes in the enzyme activity. The effect of soil HS on the activity and stability of two enzymes was

  7. Effect of different soil washing solutions on bioavailability of residual arsenic in soils and soil properties.

    Science.gov (United States)

    Im, Jinwoo; Yang, Kyung; Jho, Eun Hea; Nam, Kyoungphile

    2015-11-01

    The effect of soil washing used for arsenic (As)-contaminated soil remediation on soil properties and bioavailability of residual As in soil is receiving increasing attention due to increasing interest in conserving soil qualities after remediation. This study investigates the effect of different washing solutions on bioavailability of residual As in soils and soil properties after soil washing. Regardless of washing solutions, the sequential extraction revealed that the residual As concentrations and the amount of readily labile As in soils were reduced after soil washing. However, the bioassay tests showed that the washed soils exhibited ecotoxicological effects - lower seed germination, shoot growth, and enzyme activities - and this could largely be attributed to the acidic pH and/or excessive nutrient contents of the washed soils depending on washing solutions. Overall, this study showed that treated soils having lower levels of contaminants could still exhibit toxic effects due to changes in soil properties, which highly depended on washing solutions. This study also emphasizes that data on the As concentrations, the soil properties, and the ecotoxicological effects are necessary to properly manage the washed soils for reuses. The results of this study can, thus, be utilized to select proper post-treatment techniques for the washed soils. Copyright © 2015 Elsevier Ltd. All rights reserved.

  8. SoilEffects – start characterization of the experimental soil

    OpenAIRE

    Løes, Anne-Kristin; Johansen, Anders; Pommeresche, Reidun; Riley, Hugh

    2013-01-01

    This report describes the establishment, experimental plan and initial soil characteristics of the field experiment linked to the project “Effects of anaerobically digested manure on soil fertility - establishment of a long-term study under Norwegian conditions” (SoilEffects, 2010-14). The aim of the SoilEffects project is to identify potential risks and benefits for soil fertility when animal manure is anaerobically digested for biogas production. The field experiment was established on...

  9. Trace elements in brazilian soils

    International Nuclear Information System (INIS)

    Rocha, Geraldo Cesar

    1995-01-01

    A literature revision on trace elements (Zn, B, Mn, Mo, Cu, Fe, and Cl) in Brazilian soils was prepared, with special attention to the chemical form and range in the soil, extraction methods and correlation of the amount in soils with soil properties

  10. Soil variability in mountain areas

    OpenAIRE

    Zanini, E.; Freppaz, M.; Stanchi, S.; Bonifacio, E.; Egli, M.

    2015-01-01

    The high spatial variability of soils is a relevant issue at local and global scales, and determines the complexity of soil ecosystem functions and services. This variability derives from strong dependencies of soil ecosystems on parent materials, climate, relief and biosphere, including human impact. Although present in all environments, the interactions of soils with these forming factors are particularly striking in mountain areas.

  11. Mycotoxins in the soil environment

    OpenAIRE

    Elmholt, S.

    2008-01-01

    The paper outlines the current knowledge concerning fate of mycotoxins in the soil environment, including - outline of mycotoxins addressed (trichothecenes, zearalenone, fumonisins, aflatoxins, ochratoxins and patulin) - routes by which the mycotoxins enter the soil environment - routes by which they are immobilised or removed from the soil environment - mycotoxigenic fungi and mycotoxins in the soil environment

  12. Diel hysteresis between soil respiration and soil temperature in a biological soil crust covered desert ecosystem.

    Science.gov (United States)

    Guan, Chao; Li, Xinrong; Zhang, Peng; Chen, Yongle

    2018-01-01

    Soil respiration induced by biological soil crusts (BSCs) is an important process in the carbon (C) cycle in arid and semi-arid ecosystems, where vascular plants are restricted by the harsh environment, particularly the limited soil moisture. However, the interaction between temperature and soil respiration remains uncertain because of the number of factors that control soil respiration, including temperature and soil moisture, especially in BSC-dominated areas. In this study, the soil respiration in moss-dominated crusts and lichen-dominated crusts was continuously measured using an automated soil respiration system over a one-year period from November 2015 to October 2016 in the Shapotou region of the Tengger Desert, northern China. The results indicated that over daily cycles, the half-hourly soil respiration rates in both types of BSC-covered areas were commonly related to the soil temperature. The observed diel hysteresis between the half-hourly soil respiration rates and soil temperature in the BSC-covered areas was limited by nonlinearity loops with semielliptical shapes, and soil temperature often peaked later than the half-hourly soil respiration rates in the BSC-covered areas. The average lag times between the half-hourly soil respiration rates and soil temperature for both types of BSC-covered areas were two hours over the diel cycles, and they were negatively and linearly related to the volumetric soil water content. Our results highlight the diel hysteresis phenomenon that occurs between soil respiration rates and soil temperatures in BSC-covered areas and the negative response of this phenomenon to soil moisture, which may influence total C budget evaluations. Therefore, the interactive effects of soil temperature and moisture on soil respiration in BSC-covered areas should be considered in global carbon cycle models of desert ecosystems.

  13. Soil treatment technologies combined

    International Nuclear Information System (INIS)

    Davis, K.J.; Russell, D.J.

    1993-01-01

    The Superfund Amendments and Reauthorization Act (SARA) presents a legislative mandate to select effective and long-term remediation options. SARA has spurred the development of innovative technologies and other remedial alternatives that can be applied to the diverse contaminated media at hazardous waste sites. Even though many treatment technologies have been investigated for use at hazardous waste sites, only a few have been used successfully. Soil vapor extraction and soil composting have achieved cleanup goals at sites with soils contaminated with solvents, aromatic hydrocarbons and petroleum derivatives. With the increased use of innovative on-site technologies, the integration of multiple technologies to remediate sites with complex contaminants becomes a viable and cost-effective remedial alternative. Soil vapor extraction and composting have been applied successfully as individual technologies at hazardous waste sites. An integration of these two technologies also has been used to remediate a complex contaminated site

  14. Soils - Mean Permeability

    Data.gov (United States)

    Kansas Data Access and Support Center — This digital spatial data set provides information on the magnitude and spatial pattern of depth-weighted, mean soil permeability throughout the State of Kansas. The...

  15. Chemically stabilized soils.

    Science.gov (United States)

    2009-12-01

    The objective of this study was to conduct laboratory evaluations to quantify the effects of compaction and moisture conditions on the strength of chemically treated soils typical utilized in pavement construction in Mississippi.

  16. CPC Soil Moisture

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The monthly data set consists of a file containing 1/2 degree monthly averaged soil moisture water height equivalents for the globe from 1948 onwards. Values are...

  17. The Soil Mobilome

    DEFF Research Database (Denmark)

    Luo, Wenting

    Soil is considered a reservoir of diverse bacterial cellular functions, of which resistance mechanisms towards biological antimicrobial agents are of substantial interest to us. Previous findings report that the long-term accumulation of copper in an agricultural soil significantly affects......-selected for among natural bacterial populations. One possible explanation is the horizontal transfer of resistance genes among soil bacteria mediated by mobile genetic elements, such as plasmids, integrons, transposons and bacteriophages, of which copper and antibiotic resistance genes can be linked on the same...... mobile elements. To test this hypothesis, we collected non-polluted and CuSO4- contaminated soil samples and attempted to describe the co-selection of plasmid-encoded copper and antimicrobial resistance via both an endogenous plasmid isolation approach as well as a plasmid metagenomic approach...

  18. Thermal soil remediation

    International Nuclear Information System (INIS)

    Nelson, D.

    1999-01-01

    The environmental properties and business aspects of thermal soil remediation are described. Thermal soil remediation is considered as being the best option in cleaning contaminated soil for reuse. The thermal desorption process can remove hydrocarbons such as gasoline, kerosene and crude oil, from contaminated soil. Nelson Environmental Remediation (NER) Ltd. uses a mobile thermal desorption unit (TDU) with high temperature capabilities. NER has successfully applied the technology to target heavy end hydrocarbon removal from Alberta's gumbo clay in all seasons. The TDU consist of a feed system, a counter flow rotary drum kiln, a baghouse particulate removal system, and a secondary combustion chamber known as an afterburner. The technology has proven to be cost effective and more efficient than bioremediation and landfarming

  19. Soil degradation in Pakistan

    International Nuclear Information System (INIS)

    Khan, M.R.

    2005-01-01

    This paper diagnoses the issues involved behind the current state, usage, interactions and linkages in the soils in Pakistan. The condition of soils is deteriorating due to developmental and environmental factors such as soil degradation, water pollution, fauna degeneration etc. Issues, problems and constraints faced in the management and usage of soils are diagnosed at different levels in the ecosystems predominant in Pakistan. The research questions propose effective solutions, types of instruments, methods or processes to resolve the issues within the various areas or ecosystems in the most sustainable and effective manner [23]. Biological solutions and methods can be applied at the sub-system level by private individuals or communities at a lower cost, and at a more localized level than engineering methods. Engineering methods may be suited for interventions at a system level rather than at a sub-system level; but even at this level they will be complementary with biological methods. (author)

  20. Attenuation coefficients of soils

    International Nuclear Information System (INIS)

    Martini, E.; Naziry, M.J.

    1989-01-01

    As a prerequisite to the interpretation of gamma-spectrometric in situ measurements of activity concentrations of soil radionuclides the attenuation of 60 to 1332 keV gamma radiation by soil samples varying in water content and density has been investigated. A useful empirical equation could be set up to describe the dependence of the mass attenuation coefficient upon photon energy for soil with a mean water content of 10%, with the results comparing well with data in the literature. The mean density of soil in the GDR was estimated at 1.6 g/cm 3 . This value was used to derive the linear attenuation coefficients, their range of variation being 10%. 7 figs., 5 tabs. (author)

  1. THE DIRT ON SOILS

    Science.gov (United States)

    This keynote presentation will provide basic information regarding the physical, chemical, and biological importance of soils to 50 second grade teachers within the Cincinnati Public School System as part of a Hamilton County Department of Environmenatl Services Sois Workshop.

  2. Soil Gas Sampling

    Science.gov (United States)

    Field Branches Quality System and Technical Procedures: This document describes general and specific procedures, methods and considerations to be used and observed when collecting soil gas samples for field screening or laboratory analysis.

  3. Soil Sampling Operating Procedure

    Science.gov (United States)

    EPA Region 4 Science and Ecosystem Support Division (SESD) document that describes general and specific procedures, methods, and considerations when collecting soil samples for field screening or laboratory analysis.

  4. Soil strength and forest operations

    OpenAIRE

    Beekman, F.

    1987-01-01

    The use of heavy machinery and transport vehicles is an integral part of modern forest operations. This use often causes damage to the standing trees and to the soil. In this study the effects of vehicle traffic on the soil are analysed and the possible consequences for forest management discussed. The study is largely restricted to sandy and loamy soils because of their importance for Dutch forestry.

    Soil strength, defined as the resistance of soil structure against the impa...

  5. Microbial activity and soil organic matter decay in roadside soils polluted with petroleum hydrocarbons

    Science.gov (United States)

    Mykhailova, Larysa; Fischer, Thomas; Iurchenko, Valentina

    2015-04-01

    It has been demonstrated previously that hydrocarbon addition to soil provokes soil organic matter priming (Zyakun et al., 2011). It has further been shown that petroleum hydrocarbons deposit to roadside soils bound to fine mineral particles and together with vehicle spray (Mykhailova et al., 2014), and that hydrocarbon concentrations decrease to safe levels within the first 15 m from the road, reaching background concentrations at 60-100 m distance (Mykhailova et al., 2013). It was the aim of this study to (I) identify the bioavailability of different petroleum hydrocarbon fractions to degradation and to (II) identify the native (i.e. pedogenic) C fraction affected by hydrocarbon-mediated soil organic matter priming during decay. To address this aim, we collected soil samples at distances from 1 to 100 m (sampling depth 15 cm) near the Traktorostroiteley avenue and the Pushkinskaya street in Kharkov, as well as near the country road M18 near Kharkov, Ukraine. The roads have been under exploitation for several decades, so microbial adaptation to enhanced hydrocarbon levels and full expression of effects could be assumed. The following C fractions were quantified using 13C-CP/MAS-NMR: Carbohydrates, Proteins, Lignin, Aliphates, Carbonyl/Carboxyl as well as black carbon according to Nelson and Baldock (2005). Petroleum hydrocarbons were determind after hexane extraction using GC-MS and divided into a light fraction (chain-length C27, Mykhailova et al., 2013). Potential soil respiration was determined every 48 h by trapping of CO2 evolving from 20 g soil in NaOH at 20 ° C and at 60% of the maximum water holding capacity and titration after a total incubation period of 4 weeks in the lab. It was found that soil respiration positively correlated with the ratio of the light fraction to the sum of medium and heavy fractions of petroleum hydrocarbons, which indicates higher biodegradation primarily of the light petroleum hydrocarbon fraction. Further, soil respiration was

  6. Effects of insecticidal crystal proteins (Cry proteins) produced by genetically modified maize (Bt maize) on the nematode Caenorhabditis elegans

    International Nuclear Information System (INIS)

    Höss, Sebastian; Menzel, Ralph; Gessler, Frank; Nguyen, Hang T.; Jehle, Johannes A.; Traunspurger, Walter

    2013-01-01

    The genetically modified maize MON89034 × MON88017 expresses different crystal (Cry) proteins with pesticidal activity against the European corn borer (Cry1.105; Cry2Ab2) and the Western corn root worm (Cry3Bb1). Non-target organisms, such as soil nematodes, might be exposed to the Cry proteins that enter the soil in course of crop growing. Therefore, the risk of those proteins for nematodes was assessed by testing their toxic effects on Caenorhabditis elegans. All three insecticidal Cry proteins showed dose-dependent inhibitory effects on C. elegans reproduction (EC50: 0.12–0.38 μmol L −1 ), however, at concentrations that were far above the expected soil concentrations. Moreover, a reduced toxicity was observed when Cry proteins were added jointly. A C. elegans mutant strain deficient for receptors for the nematicidal Cry5B was also resistant against Cry1.105 and Cry2Ab2, suggesting that these Cry proteins bound to the same or similar receptors as nematicidal Cry proteins and thereby affect the reproduction of C. elegans. -- Highlights: •Insecticidal Cry proteins dose-dependently inhibited the reproduction of C. elegans. •Mixture toxicity was lower than expected from concentration-additive single effects. •Genes for MAPK-defense-pathway were up-regulated in presence of Cry protein mixture. •Knock-out strains deficient for Cry5B-receptors showed lower susceptibility to insecticidal Cry proteins. •Toxicity of insecticidal Cry-proteins on C. elegans occurred at concentrations far above expected field concentrations. -- Insecticidal Cry proteins expressed by genetically modified maize act on nematodes via a similar mode of action as nematicidal Cry proteins, however, at concentrations far above expected soil levels

  7. Effect of rainfall infiltration into unsaturated soil using soil column

    Science.gov (United States)

    Ibrahim, A.; Mukhlisin, M.; Jaafar, O.

    2018-02-01

    Rainfall especially in tropical region caused infiltration to the soil slope. The infiltration may change pore water pressure or matric suction of the soil. The event of rainfall infiltration into soil is a complex mechanism. Therefore, the main objectives of this research paper is to study the influence of rainfall intensity and duration that changed pore water pressure to soil. There are two types of soils used in this study; forest soil and kaolin. Soil column apparatus is used for experiments. Rainfall were applied to the soil and result for 3, 6, 12, 24, 72, 120 and 168 hours were retrieved. Result shows that for the both types of soil, the negative pore water pressures were increased during wetting process and gradually decreased towards drying process. The results also show that pore water pressure at top part was increased greatly as the wetting process started compared to the middle and bottom part of the column.

  8. Apparent soil electrical conductivity in two different soil types

    Directory of Open Access Journals (Sweden)

    Wilker Nunes Medeiros

    Full Text Available ABSTRACT Mapping the apparent soil electrical conductivity (ECa has become important for the characterization of the soil variability in precision agriculture systems. Could the ECa be used to locate the soil sampling points for mapping the chemical and physical soil attributes? The objective of this work was to examine the relations between ECa and soil attributes in two fields presenting different soil textures. In each field, 50 sampling points were chosen using a path that presented a high variability of ECa obtained from a preliminary ECa map. At each sampling point, the ECa was measured in soil depths of 0-20, 0-40 and 0-60 cm. In addition, at each point, soil samples were collected for the determination of physical and chemical attributes in the laboratory. The ECa data obtained for different soil depths was very similar. A large number of significant correlations between ECa and the soil attributes were found. In the sandy clay loam texture field there was no correlation between ECa and organic matter or between ECa and soil clay and sand content. However, a significant positive correlation was shown for the remaining phosphorus. In the sandy loam texture field the ECa had a significant positive correlation with clay content and a significant negative correlation with sand content. The results suggest that the mapping of apparent soil electrical conductivity does not replace traditional soil sampling, however, it can be used as information to delimit regions in a field that have similar soil attributes.

  9. Soil degradation effect on biological activity in Mediterranean calcareous soils

    Science.gov (United States)

    Roca-Pérez, L.; Alcover-Sáez, S.; Mormeneo, S.; Boluda, R.

    2009-04-01

    Soil degradation processes include erosion, organic matter decline, compaction, salinization, landslides, contamination, sealing and biodiversity decline. In the Mediterranean region the climatological and lithological conditions, together with relief on the landscape and anthropological activity are responsible for increasing desertification process. It is therefore considered to be extreme importance to be able to measure soil degradation quantitatively. We studied soil characteristics, microbiological and biochemical parameters in different calcareous soil sequences from Valencia Community (Easter Spain), in an attempt to assess the suitability of the parameters measured to reflect the state of soil degradation and the possibility of using the parameters to assess microbiological decline and soil quality. For this purpose, forest, scrubland and agricultural soil in three soil sequences were sampled in different areas. Several sensors of the soil biochemistry and microbiology related with total organic carbon, microbial biomass carbon, soil respiration, microorganism number and enzyme activities were determined. The results show that, except microorganism number, these parameters are good indicators of a soil biological activity and soil quality. The best enzymatic activities to use like indicators were phosphatases, esterases, amino-peptidases. Thus, the enzymes test can be used as indicators of soil degradation when this degradation is related with organic matter losses. There was a statistically significant difference in cumulative O2 uptake and extracellular enzymes among the soils with different degree of degradation. We would like to thank Spanish government-MICINN for funding and support (MICINN, project CGL2006-09776).

  10. Soil microbiome responses to the short-term effects of Amazonian deforestation.

    Science.gov (United States)

    Navarrete, Acacio A; Tsai, Siu M; Mendes, Lucas W; Faust, Karoline; de Hollander, Mattias; Cassman, Noriko A; Raes, Jeroen; van Veen, Johannes A; Kuramae, Eiko E

    2015-05-01

    Slash-and-burn clearing of forest typically results in increase in soil nutrient availability. However, the impact of these nutrients on the soil microbiome is not known. Using next generation sequencing of 16S rRNA gene and shotgun metagenomic DNA, we compared the structure and the potential functions of bacterial community in forest soils to deforested soils in the Amazon region and related the differences to soil chemical factors. Deforestation decreased soil organic matter content and factors linked to soil acidity and raised soil pH, base saturation and exchangeable bases. Concomitant to expected changes in soil chemical factors, we observed an increase in the alpha diversity of the bacterial microbiota and relative abundances of putative copiotrophic bacteria such as Actinomycetales and a decrease in the relative abundances of bacterial taxa such as Chlamydiae, Planctomycetes and Verrucomicrobia in the deforested soils. We did not observe an increase in genes related to microbial nutrient metabolism in deforested soils. However, we did observe changes in community functions such as increases in DNA repair, protein processing, modification, degradation and folding functions, and these functions might reflect adaptation to changes in soil characteristics due to forest clear-cutting and burning. In addition, there were changes in the composition of the bacterial groups associated with metabolism-related functions. Co-occurrence microbial network analysis identified distinct phylogenetic patterns for forest and deforested soils and suggested relationships between Planctomycetes and aluminium content, and Actinobacteria and nitrogen sources in Amazon soils. The results support taxonomic and functional adaptations in the soil bacterial community following deforestation. We hypothesize that these microbial adaptations may serve as a buffer to drastic changes in soil fertility after slash-and-burning deforestation in the Amazon region. © 2015 John Wiley & Sons Ltd.

  11. Soil bacteria help Ethiopian farmers grow more nutritious and higher ...

    International Development Research Centre (IDRC) Digital Library (Canada)

    The opportunity: Locally enhanced pulse seeds. A Canadian International Food Security Research Fund (CIFSRF) project led by scientists at the University of Saskatchewan in. Canada and Hawassa University in Ethiopia has found a way to feed the depleted soil and add protein to people's diets. Their efforts are critical to ...

  12. Soil physics and the water management of spatially variable soils

    International Nuclear Information System (INIS)

    Youngs, E.G.

    1983-01-01

    The physics of macroscopic soil-water behaviour in inert porous materials has been developed by considering water flow to take place in a continuum. This requires the flow region to consist of an assembly of representative elementary volumes, repeated throughout space and small compared with the scale of observations. Soil-water behaviour in swelling soils may also be considered as a continuum phenomenon so long as the soil is saturated and swells and shrinks in the normal range. Macroscale heterogeneity superimposed on the inherent microscale heterogeneity can take many forms and may pose difficulties in the definition and measurement of soil physical properties and also in the development and use of predictive theories of soil-water behaviour. Thus, measurement techniques appropriate for uniform soils are often inappropriate, and criteria for soil-water management, obtained from theoretical considerations of behaviour in equivalent uniform soils, are not applicable without modification when there is soil heterogeneity. The spatial variability of soil-water properties is shown in results from field experiments concerned with water flow measurements; these illustrate both stochastic and deterministic heterogeneity in soil-water properties. Problems of water management of spatially variable soils when there is stochastic heterogeneity appear to present an insuperable problem in the application of theory. However, for soils showing deterministic heterogeneity, soil-water theory has been used in the solution of soil-water management problems. Thus, scaling using similar media theory has been applied to the infiltration of water into soils that vary over a catchment area. Also, the drain spacing to control the water-table height in soils in which the hydraulic conductivity varies with depth has been calculated using groundwater seepage theory. (author)

  13. Predicting Soil-Air and Soil-Water Transport Properties During Soil Vapor Extraction

    DEFF Research Database (Denmark)

    Poulsen, Tjalfe

    Increased application of in-situ technology for control and removal of volatile organic compounds (VOC) in the subsurface has made the understanding of soil physical properties and their impact upon contaminant transport even more important. Knowledge of contaminant transport is important when...... properties of undisturbed soil from more easily measurable soil properties are developed. The importance of soil properties with respect to contaminant migration during remediation by soil vapor extraction (SVE) in the unsaturated zone was investigated using numerical simulations....

  14. The Influence of Soil Particle on Soil Condensation Water

    OpenAIRE

    Hou Xinwei; Chen Hao; Li Xiangquan; Cui Xiaomei; Liu Lingxia; Wang Zhenxing

    2013-01-01

    The experiment results showed that the indoor experiment formed from the volume of soil hygroscopic water increased gradually with decreasing size of soil particles. In the outdoor experiments, the results showed that the formed condensation water in medium sand was greater than it was in fine sand; the soil hot condensation water was mainly formed in the top layer of soil between 0-5 cm. We also found that covering the soil surface with stones can increase the volume of formed soil condensat...

  15. Pesticide-soil microflora interactions in flooded rice soils

    International Nuclear Information System (INIS)

    Sethunathan, N.; Siddaramappa, R.; Siddarame Gowda, T.K.; Rajaram, K.P.; Barik, S.; Rao, V.R.

    1976-01-01

    Isotope studies revealed that gamma and beta isomers of HCH (hexachlorocyclohexane) decomposed rapidly in nonsterile soils capable of attaining redox potentials of -40 to -100mV within 20 days after flooding. Degradation was slow, however, in soils low in organic matter and in soils with extremely low pH and positive potentials, even after several weeks of flooding. Under flooded conditions, endrin decomposed to six metabolites in most soils. There is evidence that biological hydrolysis of parathion is more widespread than hitherto believed, particularly under flooded soil conditions. Applications of benomyl (fungicide) to a simulated-oxidized zone of flooded soils favoured heterotrophic nitrification. (author)

  16. Protein nanoparticles for therapeutic protein delivery.

    Science.gov (United States)

    Herrera Estrada, L P; Champion, J A

    2015-06-01

    Therapeutic proteins can face substantial challenges to their activity, requiring protein modification or use of a delivery vehicle. Nanoparticles can significantly enhance delivery of encapsulated cargo, but traditional small molecule carriers have some limitations in their use for protein delivery. Nanoparticles made from protein have been proposed as alternative carriers and have benefits specific to therapeutic protein delivery. This review describes protein nanoparticles made by self-assembly, including protein cages, protein polymers, and charged or amphipathic peptides, and by desolvation. It presents particle fabrication and delivery characterization for a variety of therapeutic and model proteins, as well as comparison of the features of different protein nanoparticles.

  17. Soil functional types: surveying the biophysical dimensions of soil security

    Science.gov (United States)

    Cécillon, Lauric; Barré, Pierre

    2015-04-01

    Soil is a natural capital that can deliver key ecosystem services (ES) to humans through the realization of a series of soil processes controlling ecosystem functioning. Soil is also a diverse and endangered natural resource. A huge pedodiversity has been described at all scales, which is strongly altered by global change. The multidimensional concept soil security, encompassing biophysical, economic, social, policy and legal frameworks of soils has recently been proposed, recognizing the role of soils in global environmental sustainability challenges. The biophysical dimensions of soil security focus on the functionality of a given soil that can be viewed as the combination of its capability and its condition [1]. Indeed, all soils are not equal in term of functionality. They show different processes, provide different ES to humans and respond specifically to global change. Knowledge of soil functionality in space and time is thus a crucial step towards the achievement soil security. All soil classification systems incorporate some functional information, but soil taxonomy alone cannot fully describe the functioning, limitations, resistance and resilience of soils. Droogers and Bouma [2] introduced functional variants (phenoforms) for each soil type (genoform) so as to fit more closely to soil functionality. However, different genoforms can have the same functionality. As stated by McBratney and colleagues [1], there is a great need of an agreed methodology for defining the reference state of soil functionality. Here, we propose soil functional types (SFT) as a relevant classification system for the biophysical dimensions of soil security. Following the definition of plant functional types widely used in ecology, we define a soil functional type as "a set of soil taxons or phenoforms sharing similar processes (e.g. soil respiration), similar effects on ecosystem functioning (e.g. primary productivity) and similar responses to global change (land-use, management or

  18. Computational Analysis of Uncharacterized Proteins of Environmental Bacterial Genome

    Science.gov (United States)

    Coxe, K. J.; Kumar, M.

    2017-12-01

    Betaproteobacteria strain CB is a gram-negative bacterium in the phylum Proteobacteria and are found naturally in soil and water. In this complex environment, bacteria play a key role in efficiently eliminating the organic material and other pollutants from wastewater. To investigate the process of pollutant removal from wastewater using bacteria, it is important to characterize the proteins encoded by the bacterial genome. Our study combines a number of bioinformatics tools to predict the function of unassigned proteins in the bacterial genome. The genome of Betaproteobacteria strain CB contains 2,112 proteins in which function of 508 proteins are unknown, termed as uncharacterized proteins (UPs). The localization of the UPs with in the cell was determined and the structure of 38 UPs was accurately predicted. These UPs were predicted to belong to various classes of proteins such as enzymes, transporters, binding proteins, signal peptides, transmembrane proteins and other proteins. The outcome of this work will help better understand wastewater treatment mechanism.

  19. European Atlas of Soil Biodiversity

    DEFF Research Database (Denmark)

    Krogh (contributor), Paul Henning

    Soil is one of the fundamental components for supporting life on Earth. Most ecosystem processes and global functions that occur within soil are driven by living organisms that, in turn, sustain life above ground. However, despite the fact that soils are home to a quarter of all living species on...... Biodiversity is an essential reference to the many and varied aspects of soil. The overall goal of this work is to convey the fundamental necessity to safeguard soil biodiversity in order to guarantee life on this planet.......Soil is one of the fundamental components for supporting life on Earth. Most ecosystem processes and global functions that occur within soil are driven by living organisms that, in turn, sustain life above ground. However, despite the fact that soils are home to a quarter of all living species...... on Earth, life within the soil is often hidden away and suffers by being 'out of sight and out of mind'. What kind of life is there in soil? What do we mean by soil biodiversity? What is special about soil biology? How do our activities affect soil ecosystems? What are the links between soil biota...

  20. Modelling the Impact of Soil Management on Soil Functions

    Science.gov (United States)

    Vogel, H. J.; Weller, U.; Rabot, E.; Stößel, B.; Lang, B.; Wiesmeier, M.; Urbanski, L.; Wollschläger, U.

    2017-12-01

    Due to an increasing soil loss and an increasing demand for food and energy there is an enormous pressure on soils as the central resource for agricultural production. Besides the importance of soils for biomass production there are other essential soil functions, i.e. filter and buffer for water, carbon sequestration, provision and recycling of nutrients, and habitat for biological activity. All these functions have a direct feed back to biogeochemical cycles and climate. To render agricultural production efficient and sustainable we need to develop model tools that are capable to predict quantitatively the impact of a multitude of management measures on these soil functions. These functions are considered as emergent properties produced by soils as complex systems. The major challenge is to handle the multitude of physical, chemical and biological processes interacting in a non-linear manner. A large number of validated models for specific soil processes are available. However, it is not possible to simulate soil functions by coupling all the relevant processes at the detailed (i.e. molecular) level where they are well understood. A new systems perspective is required to evaluate the ensemble of soil functions and their sensitivity to external forcing. Another challenge is that soils are spatially heterogeneous systems by nature. Soil processes are highly dependent on the local soil properties and, hence, any model to predict soil functions needs to account for the site-specific conditions. For upscaling towards regional scales the spatial distribution of functional soil types need to be taken into account. We propose a new systemic model approach based on a thorough analysis of the interactions between physical, chemical and biological processes considering their site-specific characteristics. It is demonstrated for the example of soil compaction and the recovery of soil structure, water capacity and carbon stocks as a result of plant growth and biological

  1. Soil mechanics and analysis of soils overlying cavitose bedrock

    International Nuclear Information System (INIS)

    Drumm, E.C.

    1987-08-01

    The stability of the residual soils existing at the West Chestnut Ridge Site, Oak Ridge Reservation, Tennessee, was evaluated. The weathered bedrock below this residual soil contains numerous solution cavities, and several karst features were identified. The West Chestnut Ridge site was evaluated with respect to deformation and collapse of the residual soil into the bedrock cavities. A finite element analysis investigated the effects of bedrock cavity radius, thickness of soil overburden, and surface surcharge upon the deformational and stability characteristics of the residual soil. The results indicate that for small cavity radii, the thickness of the soil cover has little effect on the zone of yielded soil. For large cavity radii, a smaller zone of distressed soil occurs under thick soil cover than under thin soil cover. Dimensionless curves are presented to enable the prediction of the vertical extent of the zone of yielded soil for a range of site geometries. Although the thick soil deposits (100 feet or greater) typically found on the ridges result in high stresses adjacent to the cavity, the area of the distressed or yielded soil is small and unlikely to extend to the surface. In addition, the surface deformation or subsidence is expected to be minimal. Thus, the siting of waste facilities on the ridges where the overburden is maximum would tend to reduce the effects of deformation into the cavities. 29 refs., 37 figs., 7 tabs

  2. Protein-Protein Interaction Databases

    DEFF Research Database (Denmark)

    Szklarczyk, Damian; Jensen, Lars Juhl

    2015-01-01

    Years of meticulous curation of scientific literature and increasingly reliable computational predictions have resulted in creation of vast databases of protein interaction data. Over the years, these repositories have become a basic framework in which experiments are analyzed and new directions...

  3. Spice In Martian Soil

    Science.gov (United States)

    Seiferlin, K.; Spohn, T.; Spice Team

    The Netlander mission offers a unique opportunity to study the surface and the inte- rior of Mars at four different locations at the same time. In addition to real "network"- science, where the presence of four stations is a 'must' to address global science as- pects, local, landing site-related instruments can more than double our knowledge of the surface of Mars, compared to the three landing sites (Viking 1 and 2, Pathfinder) we are currently familiar with. The SPICE instrument will characterize the soil at the landing sites. Force sensors integrated into the seismometer legs (three per station) will determine the mechanical strength of the soil. Thermal sensors will measure the local soil temperature, the thermal inertia and the thermal diffusivity independently, thus allowing us to determine the thermal conductivity and the volumetric heat capac- ity of the soil. These properties will tell us about (1) soil cementation ("duricrust"), (2) volatile exchange with the atmosphere, (3) grain size, (4) near-surface stratigra- phy, and (5) will finally provide ground truth for remote sensing data such as that from Mars Global Surveyor's thermal emission spectrometer.

  4. Soil organic matter

    International Nuclear Information System (INIS)

    1976-01-01

    The nature, content and behaviour of the organic matter, or humus, in soil are factors of fundamental importance for soil productivity and the development of optimum conditions for growth of crops under diverse temperate, tropical and arid climatic conditions. In the recent symposium on soil organic matter studies - as in the two preceding ones in 1963 and 1969 - due consideration was given to studies involving the use of radioactive and stable isotopes. However, the latest symposium was a departure from previous efforts in that non-isotopic approaches to research on soil organic matter were included. A number of papers dealt with the behaviour and functions of organic matter and suggested improved management practices, the use of which would contribute to increasing agricultural production. Other papers discussed the turnover of plant residues, the release of plant nutrients through the biodegradation of organic compounds, the nitrogen economy and the dynamics of transformation of organic forms of nitrogen. In addition, consideration was given to studies on the biochemical transformation of organic matter, characterization of humic acids, carbon-14 dating and the development of modern techniques and their impact on soil organic matter research

  5. Lasagna trademark soil remediation

    International Nuclear Information System (INIS)

    1996-04-01

    Lasagna trademark is an integrated, in situ remediation technology being developed which remediates soils and soil pore water contaminated with soluble organic compounds. Lasagna trademark is especially suited to sites with low permeability soils where electroosmosis can move water faster and more uniformly than hydraulic methods, with very low power consumption. The process uses electrokinetics to move contaminants in soil pore water into treatment zones where the contaminants can be captured and decomposed. Initial focus is on trichloroethylene (TCE), a major contaminant at many DOE and industrial sites. Both vertical and horizontal configurations have been conceptualized, but fieldwork to date is more advanced for the vertical configuration. Major features of the technology are electrodes energized by direct current, which causes water and soluble contaminants to move into or through the treatment layers and also heats the soil; treatment zones containing reagents that decompose the soluble organic contaminants or adsorb contaminants for immobilization or subsequent removal and disposal; and a water management system that recycles the water that accumulates at the cathode (high pH) back to the anode (low pH) for acid-base neutralization. Alternatively, electrode polarity can be reversed periodically to reverse electroosmotic flow and neutralize pH

  6. Water repellent soils: the case for unsaturated soil mechanics

    Directory of Open Access Journals (Sweden)

    Beckett Christopher

    2016-01-01

    Full Text Available Water repellent (or “hydrophobic” or “non-wetting” soils have been studied by soil scientists for well over a century. These soils are typified by poor water infiltration, which leads to increased soil erosion and poor crop growth. However, the importance of water repellence on determining soil properties is now becoming recognised by geotechnical engineers. Water repellent soils may, for example, offer novel solutions for the design of cover systems overlying municipal or mine waste storage facilities. However, investigations into factors affecting their mechanical properties have only recently been initiated. This purpose of this paper is to introduce geotechnical engineers to the concept of water repellent soils and to discuss how their properties can be evaluated under an unsaturated soils framework. Scenarios in which water repellent properties might be relevant in geotechnical applications are presented and methods to quantify these properties in the laboratory and in the field examined.

  7. SOIL WASHING TREATABILITY TESTS FOR PESTICIDE- CONTAMINATED SOIL

    Science.gov (United States)

    The 1987 Sand Creek Operable Unit 5 record of decision (ROD) identified soil washing as the selected technology to remediate soils contaminated with high levels of organochlorine pesticides, herbicides, and metals. Initial treatability tests conducted to assess the applicability...

  8. Soil Spectroscopy: An Alternative to Wet Chemistry for Soil Monitoring

    DEFF Research Database (Denmark)

    Nocita, M.; Stevens, A.; van Wesemael, Bas

    2015-01-01

    The soil science community is facing a growing demand of regional, continental, and worldwide databases in order to monitor the status of the soil. However, the availability of such data is very scarce. Cost-effective tools to measure soil properties for large areas (e.g., Europe) are required....... Soil spectroscopy has shown to be a fast, cost-effective, envi-ronmental-friendly, nondestructive, reproducible, and repeatable analytical technique. The main aim of this paper is to describe the state of the art of soil spectroscopy as well as its potential to facilitating soil monitoring. The factors...... constraining the application of soil spectroscopy as an alternative to traditional laboratory analyses, together with the limits of the technique, are addressed. The paper also highlights that the widespread use of spectroscopy to monitor the status of the soil should be encouraged by (1) the creation...

  9. Shaping an Optimal Soil by Root-Soil Interaction.

    Science.gov (United States)

    Jin, Kemo; White, Philip J; Whalley, William R; Shen, Jianbo; Shi, Lei

    2017-10-01

    Crop production depends on the availability of water and mineral nutrients, and increased yields might be facilitated by a greater focus on roots-soil interactions. Soil properties affecting plant growth include drought, compaction, nutrient deficiency, mineral toxicity, salinity, and submergence. Plant roots respond to the soil environment both spatially and temporally by avoiding stressful soil environments and proliferating in more favorable environments. We observe that crops can be bred for specific root architectural and biochemical traits that facilitate soil exploration and resource acquisition, enabling greater crop yields. These root traits affect soil physical and chemical properties and might be utilized to improve the soil for subsequent crops. We argue that optimizing root-soil interactions is a prerequisite for future food security. Copyright © 2017 Elsevier Ltd. All rights reserved.

  10. Soil biogeochemistry, plant physiology and phytoremediation of cadmium contaminated soils

    Science.gov (United States)

    Cadmium (Cd) loading in soil and the environment has been accelerated worldwide due to enhanced industrialization and intensified agricultural production, particularly in the developing countries. Soil Cd pollution, resulting from both anthropogenic and geogenic sources, has posed an increasing chal...

  11. Dryland soil microbial communities display spatial biogeographic patterns associated with soil depth and soil parent material

    Science.gov (United States)

    Steven, Blaire; Gallegos-Graves, La Verne; Belnap, Jayne; Kuske, Cheryl R.

    2013-01-01

    Biological soil crusts (biocrusts) are common to drylands worldwide. We employed replicated, spatially nested sampling and 16S rRNA gene sequencing to describe the soil microbial communities in three soils derived from different parent material (sandstone, shale, and gypsum). For each soil type, two depths (biocrusts, 0–1 cm; below-crust soils, 2–5 cm) and two horizontal spatial scales (15 cm and 5 m) were sampled. In all three soils, Cyanobacteria and Proteobacteria demonstrated significantly higher relative abundance in the biocrusts, while Chloroflexi and Archaea were significantly enriched in the below-crust soils. Biomass and diversity of the communities in biocrusts or below-crust soils did not differ with soil type. However, biocrusts on gypsum soil harbored significantly larger populations of Actinobacteria and Proteobacteria and lower populations of Cyanobacteria. Numerically dominant operational taxonomic units (OTU; 97% sequence identity) in the biocrusts were conserved across the soil types, whereas two dominant OTUs in the below-crust sand and shale soils were not identified in the gypsum soil. The uniformity with which small-scale vertical community differences are maintained across larger horizontal spatial scales and soil types is a feature of dryland ecosystems that should be considered when designing management plans and determining the response of biocrusts to environmental disturbances.

  12. Stress transmission in soil

    DEFF Research Database (Denmark)

    Lamandé, Mathieu; Schjønning, Per

    We urgently need increased quantitative knowledge on stress transmission in real soils loaded with agricultural machinery. 3D measurements of vertical stresses under tracked wheels were performed in situ in a Stagnic Luvisol (clay content 20 %) continuously cropped with small grain cereals......). Seven load cells were inserted horizontally from a pit with minimal disturbance of soil in each of three depths (0.3, 0.6 and 0.9 m), covering the width of the wheeled area. The position of the wheel relative to the transducers was recorded using a laser sensor. Finally, the vertical stresses near...... the soil-tyre interface were measured in separate tests by 17 stress transducers across the width of the tyres. The results showed that the inflation pressure controlled the level of maximum stresses at 0.3 m depth, while the wheel load was correlated to the measured stresses at 0.9 m depth. This supports...

  13. Cleaning the soil

    International Nuclear Information System (INIS)

    Stegmann, R.

    1993-01-01

    Volume 6 of the Hamburg Reports contains contributions from scientists from the Special Research Field 188 'Cleaning up Contaminated Soils' of the Technical University of Hamburg-Harburg and the University of Hamburg and of experts from science and from the practical field. The soil science and analytical aspects of the biological and chemical/physical treatment processes are shown and open questions specific to processes are dealt with. Scientific results are compared with practical experience here. The evaluation of treated soils for reuse in the environment is a very important question, which is explained in the first articles here. Examples of case studies are shown in the last part of the volume. (orig.) [de

  14. Complex conductivity of soils

    DEFF Research Database (Denmark)

    Revil, A.; Coperey, A.; Shao, Z.

    2017-01-01

    The complex conductivity of soil remains poorly known despite the growing importance of this method in hyrogeophysics. In order to fill this gap of knowledge, we investigate the complex conductivity of 71 soils samples (including 4 peat samples) and one clean sand in the frequency range 0.1 Hertz...... to 45 kHz. The soil samples are saturated with 6 different NaCl brines with conductivities (0.031, 0.53, 1.15, 5.7, 14.7, and 22 S m-1, NaCl, 25°C) in order to determine their intrinsic formation factor and surface conductivity. This dataset is used to test the predictions of the dynamic Stern...

  15. Bioremediation of contaminated soil

    International Nuclear Information System (INIS)

    Balba, M.T.; Ying, A.C.; McNeice, T.G.

    1992-01-01

    Microorganisms, especially bacteria, yeast and fungi are capable of degrading many kinds of xenobiotic compounds and toxic chemicals such as petroleum hydrocarbon compounds. These microorganisms are ubiquitous in nature and, despite their enormous versatility, there are numerous cases in which long-term contamination of soil and groundwater has been observed. The persistence of the contamination is usually caused by the inability of microorganisms to metabolize these compounds under the prevailing environmental condition. This paper reports on biological remediation of contaminated sites which can be accomplished by using naturally-occurring microorganisms to treat the contaminants. The development of a bioremediation program for a specific contaminated soil system usually includes: A thorough site/soil/waste characterization; Treatability studies

  16. Soil warming increases metabolic quotients of soil microorganisms without changes in temperature sensitivity of soil respiration

    Science.gov (United States)

    Marañón-Jiménez, Sara; Soong, Jenniffer L.; Leblans, Niki I. W.; Sigurdsson, Bjarni D.; Dauwe, Steven; Fransen, Erik; Janssens, Ivan A.

    2017-04-01

    Increasing temperatures can accelerate soil organic matter (SOM) decomposition and release large amounts of CO2 to the atmosphere, potentially inducing climate change feedbacks. Alterations to the temperature sensitivity and metabolic pathways of soil microorganisms in response to soil warming can play a key role in these soil carbon (C) losses. Here, we present results of an incubation experiment using soils from a geothermal gradient in Iceland that have been subjected to different intensities of soil warming (+0, +1, +3, +5, +10 and +20 °C above ambient) over seven years. We hypothesized that 7 years of soil warming would led to a depletion of labile organic substrates, with a subsequent decrease of the "apparent" temperature sensitivity of soil respiration. Associated to this C limitation and more sub-optimal conditions for microbial growth, we also hypothesized increased microbial metabolic quotients (soil respiration per unit of microbial biomass), which is associated with increases in the relative amount of C invested into catabolic pathways along the warming gradient. Soil respiration and basal respiration rates decreased with soil warming intensity, in parallel with a decline in soil C availability. Contrasting to our first hypothesis, we did not detect changes in the temperature sensitivity of soil respiration with soil warming or on the availability of nutrients and of labile C substrates at the time of incubation. However, in agreement to our second hypothesis, microbial metabolic quotients (soil respiration per unit of microbial biomass) increased at warmer temperatures, while the C retained in biomass decreased as substrate became limiting. Long-term (7 years) temperature increases thus triggered a change in the metabolic functioning of the soil microbial communities towards increasing energy costs for maintenance or resource acquisition, thereby lowering the capacity of C retention and stabilization of warmed soils. These results highlight the need

  17. Soils, time, and primate paleoenvironments

    Science.gov (United States)

    Bown, T.M.; Kraus, M.J.

    1993-01-01

    Soils are the skin of the earth. From both poles to the equator, wherever rocks or sediment are exposed at the surface, soils are forming through the physical and chemical action of climate and living organisms. The physical attributes (color, texture, thickness) and chemical makeup of soils vary considerably, depending on the composition of the parent material and other variables: temperature, rainfall and soil moisture, vegetation, soil fauna, and the length of time that soil-forming processes have been at work. United States soil scientists1 have classified modern soils into ten major groups and numerous subgroups, each reflecting the composition and architecture of the soils and, to some extent, the processes that led to their formation. The physical and chemical processes of soil formation have been active throughout geologic time; the organic processes have been active at least since the Ordovician.2 Consequently, nearly all sedimentary rocks that were deposited in nonmarine settings and exposed to the elements contain a record of ancient, buried soils or paleosols. A sequence of these rocks, such as most ancient fluvial (stream) deposits, provides a record of soil paleoenvironments through time. Paleosols are also repositories of the fossils of organisms (body fossils) and the traces of those organisms burrowing, food-seeking, and dwelling activities (ichnofossils). Indeed, most fossil primates are found in paleosols. Careful study of ancient soils gives new, valuable insights into the correct temporal reconstruction of the primate fossil record and the nature of primate paleoenvironments. ?? 1993 Wiley-Liss, Inc.

  18. The Effect of Lead on the Glomalin Content of Hypha and Root Reactive with Monoclonal Antibody and Bradford in both in Vitro and Pot Culture Conditions

    Directory of Open Access Journals (Sweden)

    Elham Malekzadeh

    2017-02-01

    Full Text Available Introduction: Glomalin is known as a specific fungal glycoprotein belonging to the order Glomerales in phylum Glomeromycota and has been introduced as a heat shock protein. We hypothesised that increasing the level of Pb would lead to increase in glomalin production. Glomalin is usually determined by two methods, the Bradford protein dye-binding assay and the enzyme-linked immunosorbent assay (ELISA. Since many laboratories are not equipped to carry out the ELISA assay, many studies have measured glomalin-related soil protein using the Bradford colorimetric total protein assay. While, the ELISA method specifically measures glomalin by using monoclonal antibody MAb32B11. Materials and Methods: The pot experiment was conducted in the sterile free-glomalin sand with Trifolium repens L. mycorrhized by Rhizophagus irregularis fungus and treated with the Pb levels of 0, 150, 300 and 450 µM. Thus, in vitro experiment was performed in two-compartments plates containing of the transformed carrot roots (Daucus carota L. mycorrhized with the same fungus in root compartment and hyphal compartment treated with the Pb levels of 0, 0.01, 0.1 and 1 mM as Pb(NO32. For glomalin extraction, hyphal or root samples were autoclaved at 121 ⁰C with 50 mM sodium citrate buffer for 60 min in three cycles. Protein concentrations in the extracted samples were determined using a modified Bradford protein assay. Also, glomalin content in the samples were determined by indirect ELISA using monoclonal antibody MAb32B11. The percentages of the total root length were colonised by mycorrhizal fungi in pot culture and both hyphal and spore densities in the metal-containing hyphal compartment were determined. Results and Discussion: In the in vitro culture the percentage of total hyphae and spore frequency decreased, while Bradford reactive total hyphal protein (BRHP and Immunoreactive hyphal protein (IRHP in hyphal compartment increased as the concentrations of Pb increased

  19. Fixation of Soil Using PEC and Separation of Fixed Soil

    Energy Technology Data Exchange (ETDEWEB)

    Choi, Yong Suk; Yang, Hee-Man; Lee, Kune Woo; Seo, Bum-Kyoung; Moon, Jei Kwon [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

    2014-10-15

    Radioactive cesium (Cs-137) is the most apprehensive element due to its long half-lives, high solubility in water, and strong radiation emission in the form of gamma rays. Because the radioactivity is localized within topsoil, soil surface on topsoil should be fixed to prevent the spreading of the contaminated soils by wind and water erosion. Many methods have been developing for soil fixation to remove radioactive contaminants in soil and prevent to diffuse radioactive materials. Various materials have been used as fixatives such as clays, molecular sieves, polymer, and petroleum based products. One of the methods is a soil fixation or solidification using polyelectrolyte. Polyelectrolytes have many ionic groups and form the polyelectrolyte complex (PEC) due to electrostatic interaction of anion and cation in an aqueous solution. polyelectrolyte complex can fix soil particles by flocculation and formation of crust between soil. The method can prevent a spread of radioactive material by floating on a soil surface. The decontamination efficiency of the surface soils reached about 90%, and dust release was effectively suppressed during the removal of surface soils. However it has a problem that the removed soil must separate soil and polymer to treat as the waste. In this study, the fixation of soil by polyelectrolyte complex to suppress the spread of contaminant and the separation method of soil and polymer was investigated. The properties of polyelectrolyte complex solution and the stability of fixed soil by polyelectrolyte complex were investigated. The concentration of salt in the polyelectrolyte complex solution is a very important parameter for the soil fixation.

  20. Developing and using artificial soils to analyze soil microbial processes

    Science.gov (United States)

    Gao, X.; Cheng, H. Y.; Boynton, L.; Masiello, C. A.; Silberg, J. J.

    2017-12-01

    Microbial diversity and function in soils are governed by soil characteristics such as mineral composition, particles size and aggregations, soil organic matter (SOM), and availability of nutrients and H2O. The spatial and temporal heterogeneity of soils creates a range of niches (hotspots) differing in the availability of O2, H2O, and nutrients, which shapes microbial activities at scales ranging from nanometer to landscape. Synthetic biologists often examine microbial response trigged by their environment conditions in nutrient-rich aqueous media using single strain microbes. While these studies provided useful insight in the role of soil microbes in important soil biogeochemical processes (e.g., C cycling, N cycling, etc.), the results obtained from the over-simplified model systems are often not applicable natural soil systems. On the contrary, soil microbiologists examine microbial processes in natural soils using longer incubation time. However, due to its physical, chemical and biological complexity of natural soils, it is often difficult to examine soil characteristics independently and understand how each characteristic influences soil microbial activities and their corresponding soil functioning. Therefore, it is necessary to bridge the gap and develop a model matrix to exclude unpredictable influences from the environment while still reliably mimicking real environmental conditions. The objective of this study is to design a range of ecologically-relevant artificial soils with varying texture (particle size distribution), structure, mineralogy, SOM content, and nutrient heterogeneity. We thoroughly characterize the artificial soils for pH, active surface area and surface morphology, cation exchange capacity (CEC), and water retention curve. We demonstrate the effectiveness of the artificial soils as useful matrix for microbial processes, such as microbial growth and horizontal gene transfer (HGT), using the gas-reporting biosensors recently developed in

  1. Soil and ground cover

    International Nuclear Information System (INIS)

    Wiechen, A.; Heine, K.; Bundesanstalt fuer Milchforschung, Kiel

    1985-01-01

    The monitoring programmes set up in accordance with the directives for the surveillance of effluents from nuclear installations oblige operators of such installations to take samples of vegetation (grass) and soil twice a year at the least favourable place in the industrial plant's environment, and at a reference site, for radioactivity monitoring by gamma spectroscopy. In addition, the samples are to be examined for their Sr-90 content. Data recorded over the years show that nuclear facilities do not significantly contribute to soil and vegetation contamination with Sr-90 or Cs-137. The directives require regular interlaboratory comparisons, which are coordinated by the directing centre at Kiel. (DG) [de

  2. Soil monitoring instrumentation

    International Nuclear Information System (INIS)

    Umbarger, C.J.

    1980-01-01

    The Los Alamos Scientific Laboratory (LASL) has an extensive program for the development of nondestructive assay instrumentation for the quantitative analysis of transuranic (TRU) materials found in bulk solid wastes generated by Department of Energy facilities and by the commercial nuclear power industry. Included are wastes generated in decontamination and decommissioning of outdated nuclear facilities as well as wastes from old waste burial ground exhumation programs. The assay instrumentation is designed to have detection limits below 10 nCi/g wherever practicable. Because of the topic of this workshop, only the assay instrumentation applied specifically to soil monitoring will be discussed here. Four types of soil monitors are described

  3. Soil contamination studies

    International Nuclear Information System (INIS)

    1997-06-01

    The objective of this project was to develop a quick screening method that accurately identifies and quantifies the amount of alpha-emitting radionuclides in infinitely-thick soil samples using a Frisch grid ionization chamber. An additional objective of the work was to provide the US Department of Energy, Nevada Operations Office and its contractors with information on the theoretical and actual measured results of atmospheric testing contamination of soil and water at the Nevada Test Site through a comprehensive search of existing literature

  4. Soil reinforcement with geosynthetics

    Directory of Open Access Journals (Sweden)

    Bessaim Mohammed Mustapha

    2018-01-01

    Full Text Available The proportionality of existence of land with good bearing to erect any building or building is very small, to remedy this deficiency it is necessary to resort to techniques of reinforcement of the soils which can constitute a very important development. Among these methods of remediation, there is reinforcement by the geosynthetics which constitute an effective solution to these constraints. This process tends to stabilize the soil in question with increased load bearing capacity in civil engineering and geotechnical works such as embankments, slopes, embankments and hydraulic structures, with an inestimable gain in time, economy and durability while preserving the natural and environmental aspect.

  5. Sustainable Soil Management

    DEFF Research Database (Denmark)

    Green, Ole; Evgrafova, Alevtina; Kirkegaard Nielsen, Søren

    Linket til højre henviser til rapporten i trykt format til download. This report provides an overview on new technologies for integrate sustainable and resilient management practices in arable ecosystems for advanced farmers, consultants, NGOs and policy makers. By following sustainable soil...... and soil quality in short- and long-terms. This report also illustrates the importance to combine a system approach for plant production by assessing field readiness, managing in-field traffic management, implementing the sitespecific controlled as well as sensor-controlled seedbed preparation, seeding...

  6. Soil invertebrate fauna affect N2O emissions from soil

    NARCIS (Netherlands)

    Kuiper, I.; Deyn, de G.B.; Thakur, M.P.; Groenigen, van J.W.

    2013-01-01

    Nitrous oxide (N2O) emissions from soils contribute significantly to global warming. Mitigation of N2O emissions is severely hampered by a lack of understanding of its main controls. Fluxes can only partly be predicted from soil abiotic factors and microbial analyses – a possible role for soil fauna

  7. Hysteresis of soil temperature under different soil moisture and ...

    African Journals Online (AJOL)

    ... in a solar greenhouse. The objective of this study was to find a simple method to estimate the hysteresis of soil temperature under three soil moisture and two fertilizer levels in solar greenhouse conditions with tomato crop (Lycopersicon esculentum Mill). The results show that the soil moisture had no significant effects on ...

  8. Soils in Schools: Embedding Soil Science in STEM

    Science.gov (United States)

    Bryce, Alisa

    2015-01-01

    Soil science, though relevant to a variety of subjects including science, geography, mathematics, social sciences and history, is typically perceived as a subgenre of agriculture. With a global need for soil scientists, and declining numbers in university soil courses, there's a growing gap between science needs and providers. One way to promote…

  9. Soil texture classification algorithm using RGB characteristics of soil images

    Science.gov (United States)

    Soil texture has an important influence on agriculture, affecting crop selection, movement of nutrients and water, soil electrical conductivity, and crop growth. Soil texture has traditionally been determined in the laboratory using pipette and hydrometer methods that require a considerable amount o...

  10. Soil microbial community response to land use and various soil ...

    African Journals Online (AJOL)

    Soil microbial community response to land use and various soil elements in a city landscape of north China. ... African Journal of Biotechnology ... Legumes played an important role in stimulating the growth and reproduction of various soil microbial populations, accordingly promoting the microbial catabolic activity.

  11. Impacts of prescribed fire on soil loss and soil quality

    NARCIS (Netherlands)

    Shakesby, Richard A.; Martins Bento, Celia; Ferreira, Carla S.S.; Ferreira, António J.D.; Stoof, C.R.; Urbanek, Emilia; Walsh, Rory P.D.

    2015-01-01

    Prescribed (controlled) fire has recently been adopted as an important wildfire-fighting strategy in the Mediterranean. Relatively little research, however, has assessed its impacts on soil erosion and soil quality. This paper investigates hillslope-scale losses of soil, organic matter and

  12. Soil tension mediates isotope fractionation during soil water evaporation

    Science.gov (United States)

    Gaj, Marcel; McDonnell, Jeffrey

    2017-04-01

    Isotope tracing of the water cycle is increasing in its use and usefulness. Many new studies are extracting soil waters and relating these to streamflow, groundwater recharge and plant transpiration. Nevertheless, unlike isotope fractionation factors from open water bodies, soil water fractionation factors are poorly understood and until now, only empirically derived. In contrast to open water evaporation where temperature, humidity and vapor pressure gradient define fractionation (as codified in the well-known Craig and Gordon model), soil water evaporation includes additionally, fractionation by matrix effects. There is yet no physical explanation of kinetic and equilibrium fraction from soil water within the soil profile. Here we present a simple laboratory experiment with four admixtures of soil grain size (from sand to silt to clay). Oven-dried samples were spiked with water of known isotopic composition at different soil water contents. Soils were then stored in sealed bags and the headspace filled with dry air and allowed to equilibrate for 24hours. Isotopic analysis of the headspace vapor was done with a Los Gatos Inc. water vapor isotope analyzer. Soil water potential of subsamples were measured with a water potential meter. We show for the first time that soil tension controls isotope fractionation in the resident soil water. Below a Pf 3.5 the δ-values of 18O and 2H of the headspace vapor is more positive and increases with increasing soil water potential. Surprisingly, we find that the relationship between soil tension and equilibrium fractionation is independent of soil type. However, δ-values of each soil type plot along a distinct evaporation line. These results indicate that equilibrium fractionation is affected by soil tension in addition to temperature. Therefore, at high soil water tension (under dry conditions) equilibrium fractionation is not consistent with current empirical formulations that ignore these effects. These findings may have

  13. Allegheny County Soil Type Areas

    Data.gov (United States)

    Allegheny County / City of Pittsburgh / Western PA Regional Data Center — This dataset contains soil type and soil classification, by area. Additional info at: http://mcdc.cas.psu.edu/datawiz.htm;...

  14. St Francis Hydro, Soils data

    Data.gov (United States)

    U.S. Environmental Protection Agency — We collected data 2012-2016 covering spatially-explicit, soil layering, bulk density, drainage rate (2012, 2015) infiltration into rain garden mulch and mineral soil...

  15. Frost Heave in Colloidal Soils

    KAUST Repository

    Peppin, Stephen; Majumdar, Apala; Style, Robert; Sander, Graham

    2011-01-01

    We develop a mathematical model of frost heave in colloidal soils. The theory accountsfor heave and consolidation while not requiring a frozen fringe assumption. Two solidificationregimes occur: a compaction regime in which the soil consolidates

  16. Collapse settlement in compacted soils

    CSIR Research Space (South Africa)

    Booth, AR

    1977-01-01

    Full Text Available Research into collapse settlement in compacted soils is described, with special reference to recent cases in Southern Africa where collapse settlement occurred in road embankments following wetting of the soil. The laboratory work described...

  17. Aquaporin Protein-Protein Interactions

    Directory of Open Access Journals (Sweden)

    Jennifer Virginia Roche

    2017-10-01

    Full Text Available Aquaporins are tetrameric membrane-bound channels that facilitate transport of water and other small solutes across cell membranes. In eukaryotes, they are frequently regulated by gating or trafficking, allowing for the cell to control membrane permeability in a specific manner. Protein–protein interactions play crucial roles in both regulatory processes and also mediate alternative functions such as cell adhesion. In this review, we summarize recent knowledge about aquaporin protein–protein interactions; dividing the interactions into three types: (1 interactions between aquaporin tetramers; (2 interactions between aquaporin monomers within a tetramer (hetero-tetramerization; and (3 transient interactions with regulatory proteins. We particularly focus on the structural aspects of the interactions, discussing the small differences within a conserved overall fold that allow for aquaporins to be differentially regulated in an organism-, tissue- and trigger-specific manner. A deep knowledge about these differences is needed to fully understand aquaporin function and regulation in many physiological processes, and may enable design of compounds targeting specific aquaporins for treatment of human disease.

  18. Soil! Get the Scoop - The Soil Science Society of America's International Year of Soils Campaign

    Science.gov (United States)

    Lindbo, David L.; Hopmans, Jan; Olson, Carolyn; Fisk, Susan; Chapman, Susan; van Es, Harold

    2015-04-01

    Soils are a finite natural resource and are nonrenewable on a human time scale. Soils are the foundation for food, animal feed, fuel and natural fiber production, the supply of clean water, nutrient cycling and a range of ecosystem functions. The area of fertile soils covering the world's surface is limited and increasingly subject to degradation, poor management and loss to urbanization. Increased awareness of the life-supporting functions of soil is called for if this trend is to be reversed and so enable the levels of food production necessary to meet the demands of population levels predicted for 2050. The Soil Science Society of America is coordinating with the Global Soil Partnership and other organizations around the world to celebrate the 2015 International Year of Soils and raise awareness and promote the sustainability of our limited soil resources. We all have a valuable role in communicating vital information on soils, a life sustaining natural resource. Therefore, we will provide resources to learn about soils and help us tell the story of soils. We will promote IYS on social media by sharing our posts from Facebook and Twitter. Additionally SSSA developed 12 monthly themes that reflect the diverse value of soils to our natural environment and society. Each month has information on the theme, a lesson plan, and other outreach activities. All information is available on a dedicated website www.soil.org/IYS. The site will be updated constantly throughout the year.

  19. Sustainable Soil Water Management Systems

    OpenAIRE

    Basch, G.; Kassam, A.; Friedrich, T.; Santos, F.L.; Gubiani, P.I.; Calegari, A.; Reichert, J.M.; dos Santos, D.R.

    2012-01-01

    Soil quality and its management must be considered as key elements for an effective management of water resources, given that the hydrological cycle and land management are intimately linked (Bossio et al. 2007). Soil degradation has been described by Bossio et al. (2010) as the starting point of a negative cycle of soil-water relationships, creating a positive, self-accelerating feedback loop with important negative impacts on water cycling and water productivity. Therefore, sustainable soil...

  20. Soil, a sponge for pollutants

    OpenAIRE

    Lichtfouse , Eric

    1997-01-01

    This article is written both in English and French; International audience; This preface of the special issue entitled "Soil Pollutants" (Analusis Magazine 25, M16-M72, 1997) highlights major basic and applied issues about the sources and fate of organic, mineral and radioactive pollutants in soils. Soils have long been considered as a closed and inert medium where wastes can be dumped without impact on living organisms. This is false and we know now that soils play a vital role in ecosystems...

  1. Engineering Significant of Swelling Soils

    OpenAIRE

    Behzad Kalantari

    2012-01-01

    This study describes some of the most important swelling characters of expansive soils when used as foundation materials to support various types of civil engineering structures. Expansive soils are considered among difficult foundation materials and expand upon wetting and shrink upon losing moisture. They are considered problematic soils for architectural and civil engineers. These types of soils may cause minor to major structural damages to pavements as well as buildings. It is therefore ...

  2. Soil gas radon response to environmental and soil physics variables

    International Nuclear Information System (INIS)

    Thomas, D.M.; Chen, C.; Holford, D.

    1991-01-01

    During the last three years a field study of soil gas radon activities conducted at Poamoho, Oahu, has shown that the primary environmental variables that control radon transport in shallow tropical soils are synoptic and diurnal barometric pressure changes and soil moisture levels. Barometric pressure changes drive advective transport and mixing of soil gas with atmospheric air; soil moisture appears to control soil porosity and permeability to enhance or inhibit advective and diffusive radon transport. An advective barrier test/control experiment has shown that advective exchange of soil gas and air may account for a substantial proportion of the radon loss from shallow soils but does not significantly affect radon activities at depths greater than 2.3 m. An irrigation test/control experiment also suggests that, at soil moisture levels approaching field capacity, saturation of soil macroporosity can halt all advective transport of radon and limit diffusive mobility to that occurring in the liquid phase. The results of the authors field study have been used to further refine and extend a numerical model, RN3D, that has been developed by Pacific Northwest Laboratories to simulate subsurface transport of radon. The field data have allowed them to accurately simulate the steady state soil gas radon profile at their field site and to track transient radon activities under the influence of barometric pressure changes and in response to changes in soil permeability that result from variations in soil moisture levels. Further work is continuing on the model to enable it to properly account for the relative effects of advective transport of soil gas through cracks and diffusive mobility in the bulk soils

  3. Soil structural quality assessment for soil protection regulation

    Science.gov (United States)

    Johannes, Alice; Boivin, Pascal

    2017-04-01

    Soil quality assessment is rapidly developing worldwide, though mostly focused on the monitoring of arable land and soil fertility. Soil protection regulations assess soil quality differently, focusing on priority pollutants and threshold values. The soil physical properties are weakly considered, due to lack of consensus and experimental difficulties faced with characterization. Non-disputable, easy to perform and inexpensive methods should be available for environmental regulation to be applied, which is unfortunately not the case. As a consequence, quantitative soil physical protection regulation is not applied, and inexpensive soil physical quality indicators for arable soil management are not available. Overcoming these limitations was the objective of a research project funded by the Swiss federal office for environment (FOEN). The main results and the perspectives of application are given in this presentation. A first step of the research was to characterize soils in a good structural state (reference soils) under different land use. The structural quality was assessed with field expertise and Visual Evaluation of the Soil Structure (VESS), and the physical properties were assessed with Shrinkage analysis. The relationships between the physical properties and the soil constituents were linear and highly determined. They represent the reference properties of the corresponding soils. In a second step, the properties of physically degraded soils were analysed and compared to the reference properties. This allowed defining the most discriminant parameters departing the different structure qualities and their threshold limits. Equivalent properties corresponding to these parameters but inexpensive and easy to determine were defined and tested. More than 90% of the samples were correctly classed with this method, which meets, therefore, the requirements for practical application in regulation. Moreover, result-oriented agri-environmental schemes for soil quality

  4. Protein immobilization strategies for protein biochips

    NARCIS (Netherlands)

    Rusmini, F.; Rusmini, Federica; Zhong, Zhiyuan; Feijen, Jan

    2007-01-01

    In the past few years, protein biochips have emerged as promising proteomic and diagnostic tools for obtaining information about protein functions and interactions. Important technological innovations have been made. However, considerable development is still required, especially regarding protein

  5. Soils [Chapter 4.2

    Science.gov (United States)

    Daniel G. Neary; Johannes W. A. Langeveld

    2015-01-01

    Soils are crucial for profitable and sustainable biomass feedstock production. They provide nutrients and water, give support for plants, and provide habitat for enormous numbers of biota. There are several systems for soil classification. FAO has provided a generic classification system that was used for a global soil map (Bot et al., 2000). The USDA Natural Resources...

  6. Soil carbon 4 per mille

    NARCIS (Netherlands)

    Mulder, V.L.

    2017-01-01

    The ‘4 per mille Soils for Food Security and Climate’ was launched at the COP21 with an aspiration to increase global soil organic matter stocks by 4 per 1000 (or 0.4 %) per year as a compensation for the global emissions of greenhouse gases by anthropogenic sources. This paper surveyed the soil

  7. A study on soil structure

    NARCIS (Netherlands)

    Schuylenborgh, van J.

    1947-01-01

    As soils differ in capacity to form a structure, it is necessary to distinguish between intrinsic structure and actual structure. Intrinsic structure is the capacity of a soil to form a certain structure. Actual structure is the structure of the soil at a certain moment.

    Using experiments and

  8. Mycorrhizas and tropical soil fertility

    NARCIS (Netherlands)

    Cardoso, I.M.; Kuyper, T.W.

    2006-01-01

    Major factors that constrain tropical soil fertility and sustainable agriculture are low nutrient capital, moisture stress, erosion, high P fixation, high acidity with aluminium toxicity, and low soil biodiversity. The fragility of many tropical soils limits food production in annual cropping

  9. The threat of soil salinity

    NARCIS (Netherlands)

    Daliakopoulos, I.N.; Tsanis, I.K.; Koutroulis, A.; Kourgialas, N.N.; Varouchakis, A.E.; Karatzas, G.P.; Ritsema, C.J.

    2016-01-01

    Soil salinisation is one of the major soil degradation threats occurring in Europe. The effects of salinisation can be observed in numerous vital ecological and non-ecological soil functions. Drivers of salinisation can be detected both in the natural and man-made environment, with climate and

  10. Minnesota's Soils and Their Uses.

    Science.gov (United States)

    Halsey, Clifton

    There is an increasing need for land planning and understanding soil is one step toward assuring proper land use. This publication, written by soil scientists and teachers, is designed as a reference for high school teachers. It is designed to be a comprehensive collection about Minnesota soils (although the information can be applied to other…

  11. Biological Soil Crust Web Site

    Science.gov (United States)

    www.soilcrust.org Crust 101 Advanced Gallery References CCERS site Links Biological Soil Crusts Textbook Corrections Level of Development Index Biological soil crusts are the community of organisms , mosses, liverworts and lichens. A Field Guide to Biological Soil Crusts of Western U.S. Drylands: Common

  12. An Enzymatic Treatment of Soil-Bound Prions Effectively Inhibits Replication ▿

    Science.gov (United States)

    Saunders, Samuel E.; Bartz, Jason C.; Vercauteren, Kurt C.; Bartelt-Hunt, Shannon L.

    2011-01-01

    Chronic wasting disease (CWD) and scrapie can be transmitted through indirect environmental routes, possibly via soil, and a practical decontamination strategy for prion-contaminated soil is currently unavailable. In the laboratory, an enzymatic treatment under environmentally relevant conditions (22°C, pH 7.4) can degrade soil-bound PrPSc below the limits of Western blot detection. We developed and used a quantitative serial protein misfolding cyclic amplification (PMCA) protocol to characterize the amplification efficiency of treated soil samples relative to controls of known infectious titer. Our results suggest large (104- to >106-fold) decreases in soil-bound prion infectivity following enzyme treatment, demonstrating that a mild enzymatic treatment could effectively reduce the risk of prion disease transmission via soil or other environmental surfaces. PMID:21571886

  13. Soil threats and soil protection: the role of biotechnology

    International Nuclear Information System (INIS)

    Rubio, J. L.

    2009-01-01

    The concept of soil conservation/soil protection in its wider sense has undergone important changes through history. Perceptions of soil as a crucial base of life in ancient cultures progressively evolved to a more pragmatic vision, with close connection to food production for survival. For centuries, agrarian production and the provision of food for humankind remained the main and crucial vision of the interaction of societies with soil. However, there are also some other new and important concepts related to soil which have progressively developed. (Author)

  14. SoilInfo App: global soil information on your palm

    Science.gov (United States)

    Hengl, Tomislav; Mendes de Jesus, Jorge

    2015-04-01

    ISRIC ' World Soil Information has released in 2014 and app for mobile de- vices called 'SoilInfo' (http://soilinfo-app.org) and which aims at providing free access to the global soil data. SoilInfo App (available for Android v.4.0 Ice Cream Sandwhich or higher, and Apple v.6.x and v.7.x iOS) currently serves the Soil- Grids1km data ' a stack of soil property and class maps at six standard depths at a resolution of 1 km (30 arc second) predicted using automated geostatistical mapping and global soil data models. The list of served soil data includes: soil organic carbon (), soil pH, sand, silt and clay fractions (%), bulk density (kg/m3), cation exchange capacity of the fine earth fraction (cmol+/kg), coarse fragments (%), World Reference Base soil groups, and USDA Soil Taxonomy suborders (DOI: 10.1371/journal.pone.0105992). New soil properties and classes will be continuously added to the system. SoilGrids1km are available for download under a Creative Commons non-commercial license via http://soilgrids.org. They are also accessible via a Representational State Transfer API (http://rest.soilgrids.org) service. SoilInfo App mimics common weather apps, but is also largely inspired by the crowdsourcing systems such as the OpenStreetMap, Geo-wiki and similar. Two development aspects of the SoilInfo App and SoilGrids are constantly being worked on: Data quality in terms of accuracy of spatial predictions and derived information, and Data usability in terms of ease of access and ease of use (i.e. flexibility of the cyberinfrastructure / functionalities such as the REST SoilGrids API, SoilInfo App etc). The development focus in 2015 is on improving the thematic and spatial accuracy of SoilGrids predictions, primarily by using finer resolution covariates (250 m) and machine learning algorithms (such as random forests) to improve spatial predictions.

  15. Soil-ecological risks for soil degradation estimation

    Science.gov (United States)

    Trifonova, Tatiana; Shirkin, Leonid; Kust, German; Andreeva, Olga

    2016-04-01

    Soil degradation includes the processes of soil properties and quality worsening, primarily from the point of view of their productivity and decrease of ecosystem services quality. Complete soil cover destruction and/or functioning termination of soil forms of organic life are considered as extreme stages of soil degradation, and for the fragile ecosystems they are normally considered in the network of their desertification, land degradation and droughts /DLDD/ concept. Block-model of ecotoxic effects, generating soil and ecosystem degradation, has been developed as a result of the long-term field and laboratory research of sod-podzol soils, contaminated with waste, containing heavy metals. The model highlights soil degradation mechanisms, caused by direct and indirect impact of ecotoxicants on "phytocenosis- soil" system and their combination, frequently causing synergistic effect. The sequence of occurring changes here can be formalized as a theory of change (succession of interrelated events). Several stages are distinguished here - from heavy metals leaching (releasing) in waste and their migration downward the soil profile to phytoproductivity decrease and certain phytocenosis composition changes. Phytoproductivity decrease leads to the reduction of cellulose content introduced into the soil. The described feedback mechanism acts as a factor of sod-podzolic soil self-purification and stability. It has been shown, that using phytomass productivity index, integrally reflecting the worsening of soil properties complex, it is possible to solve the problems dealing with the dose-reflecting reactions creation and determination of critical levels of load for phytocenosis and corresponding soil-ecological risks. Soil-ecological risk in "phytocenosis- soil" system means probable negative changes and the loss of some ecosystem functions during the transformation process of dead organic substance energy for the new biomass composition. Soil-ecological risks estimation is

  16. Infiltration in Unsaturated Soils

    DEFF Research Database (Denmark)

    Ghotbi, Abdoul R.; Omidvar, M.; Barari, Amin

    2011-01-01

    An approximate analytical solution has been established for the well known Richards’ equation for unsaturated flow of transports in soils. Despite the importance of Richards’ equation in geotechnical and geoenvironmental applications, most solutions to the problem are generally based on numerical...

  17. stabilized lateritic soil

    African Journals Online (AJOL)

    user

    this work to optimize the amount of bagasse ash content in cement-stabilized lateritic soil. Geometric .... can handle or consider all the properties involved at the same time to ...... Bearig Ratio of Used oil contaminated Lateritic soils” Nigerian ...

  18. Hydrology and soil erosion

    Science.gov (United States)

    Leonard J. Lane; Mary R. Kidwell

    2003-01-01

    We review research on surface water hydrology and soil erosion at the Santa Rita Experimental Range (SRER). Almost all of the research was associated with eight small experimental watersheds established from 1974 to 1975 and operated until the present. Analysis of climatic features of the SRER supports extending research findings from the SRER to broad areas of the...

  19. When soils become sediments

    NARCIS (Netherlands)

    Vink, Jos P.M.; Zomeren, van Andre; Dijkstra, Joris J.; Comans, Rob N.J.

    2017-01-01

    Simulating the storage of aerobic soils under water, the chemical speciation of heavy metals and arsenic was studied over a long-term reduction period. Time-dynamic and redox-discrete measurements in reactors were used to study geochemical changes. Large kinetic differences in the

  20. Soil and fertilizer nitrogen

    International Nuclear Information System (INIS)

    Winteringham, F.P.W.

    1984-01-01

    As a result of the intensified practices and effectively diminishing land resources per capita, increasing weights of both native soil- and added fertilizer-nitrogen will be lost to agriculture and its products, and will find their way into the environment. Soil-nitrogen levels and contingent productivity can nevertheless be maintained in the face of these losses on the basis of improved soil-N management. In some local situations nitrate levels in water for drinking purposes are likely to continue rising. In some cases agriculture and clearance practices are only one of several sources. In others they are clearly mainly responsible. In developing countries these losses represent those of a relatively increasingly costly input. This is due to the fact that industrial fertilizer nitrogen production is a particularly high energy-consuming process. In the more advanced industrialized countries they represent an addition to the problems and costs of environmental quality and health protection. The programmes, information and data reviewed here suggest that these problems can be contained by improved and extended soil and water management in agriculture on the basis of existing technology. In particular there appears to be enormous scope for the better exploitation of existing legumes both as non-legume crop alternatives or as biofertilizers which also possess more desirable C:N ratios than chemical fertilizer

  1. Surface soil contamination standards

    International Nuclear Information System (INIS)

    Boothe, G.F.

    1979-01-01

    The purpose of this document is to define surface soil contamination limits for radioactive materials below which posting, restrictions and environmental controls are not necessary in order to protect personnel and the environment. The standards can also be used to determine if solid waste or other material is contaminated relative to disposal requirements. The derivation of the standards is given

  2. Humus and soil fertility

    Science.gov (United States)

    Kevin T. Smith

    2010-01-01

    Humus is a Latin word, meaning on or in the ground, but what is humus in the context of tree and landscape care? Is humus the same as soil organic matter? With the increased emphasis on biologically-based products for sustainable landscapes and tree care, the sources and quality of humus products have greatly increased in recent years.

  3. Soil Science Forensic Application

    OpenAIRE

    Rēpele, M; Alksne, M

    2009-01-01

    The forensic potential of soil and geological evidence has been recognized for more than a century, but in the last 15 years these types of evidence have been used much more widely both as an investigative intelligence tool and as evidence in court.

  4. Application of MCPA herbicide on soils amended with biostimulants: short-time effects on soil biological properties.

    Science.gov (United States)

    Tejada, Manuel; García-Martínez, Ana M; Gómez, Isidoro; Parrado, Juan

    2010-08-01

    In this paper we studied in the laboratory the effect of MCPA herbicide at a rate of 1.5lha(-1) (manufactures rate recommended) on biological properties of a Plagic Antrosol amended with four biostimulants (WCDS, wheat condensed distillers soluble; PA-HE, hydrolyzed poultry feathers; CGHE, carob germ enzymatic extract; and RB, rice bran extract). Seven hundred grams of soil were mixed with WCDS at a rate of 10%, CGHE at a rate of 4.7%, PA-HE at a rate of 4.3%, and RB at a rate of 4.4%, respectively, in order to applying the same amount of organic matter to the soil (16.38 g organic matter). An unamended polluted and amended non-polluted soil were used as control. For all treatments, the soil ergosterol, dehydrogenase, urease, and phosphatase activities were measured at two incubation times (0 and 60 d). The 16S rDNA-DGGE profiles in all treatments were determined at the beginning and end of the incubation period. The results indicated that at the end of the incubation period and compared with the control soil, the dehydrogenase, urease and phosphatase activities and ergosterol decreased 39.3%, 20%, 15.7% and 56.5%, respectively in the non-organic amended polluted soil. The application of organic matter to unpolluted soil increased the enzymatic activities and ergosterol. However, this stimulation was higher in the soil amended with RB, followed by PA-HE, WCDS and CGHE. The application of herbicide in organic-amended soils decreased the enzymatic activities and ergosterol content. However, this decrease was lower than for the non-amended herbicide polluted soil. Possibly the low molecular weight protein content easily assimilated by soil microorganisms and the adsorption capacity of humic substances are responsible for less inhibition of these enzyme activities and soil ergosterol. The 16S rDNA-DGGE profiles indicated that herbicide did not negatively affect soil bacterial biodiversity. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

  5. Physical soil degradation in the Netherlands

    NARCIS (Netherlands)

    Boels, D.; Havinga, L.

    1980-01-01

    Soils used in agriculture are subjected to a wide variety of human activities. Soil tillage and soil impravement operations may loose the soil, while soil wetting due to rainfall, and farming operations as sowing, spraying, weed control and harvesting but also grazing cattle may compact the soil.

  6. Impact of Soil Texture on Soil Ciliate Communities

    Science.gov (United States)

    Chau, J. F.; Brown, S.; Habtom, E.; Brinson, F.; Epps, M.; Scott, R.

    2014-12-01

    Soil water content and connectivity strongly influence microbial activities in soil, controlling access to nutrients and electron acceptors, and mediating interactions between microbes within and between trophic levels. These interactions occur at or below the pore scale, and are influenced by soil texture and structure, which determine the microscale architecture of soil pores. Soil protozoa are relatively understudied, especially given the strong control they exert on bacterial communities through predation. Here, ciliate communities in soils of contrasting textures were investigated. Two ciliate-specific primer sets targeting the 18S rRNA gene were used to amplify DNA extracted from eight soil samples collected from Sumter National Forest in western South Carolina. Primer sets 121F-384F-1147R (semi-nested) and 315F-959R were used to amplify soil ciliate DNA via polymerase chain reaction (PCR), and the resulting PCR products were analyzed by gel electrophoresis to obtain quantity and band size. Approximately two hundred ciliate 18S rRNA sequences were obtained were obtained from each of two contrasting soils. Sequences were aligned against the NCBI GenBank database for identification, and the taxonomic classification of best-matched sequences was determined. The ultimate goal of the work is to quantify changes in the ciliate community under short-timescale changes in hydrologic conditions for varying soil textures, elucidating dynamic responses to desiccation stress in major soil ciliate taxa.

  7. Soil washing results for mixed waste pond soils at Hanford

    International Nuclear Information System (INIS)

    Gerber, M.A.

    1991-09-01

    Soil washing technology was assessed as a means for remediating soil contaminated with mixed wastes primarily composed of heavy metals and radionuclides. The soils at the US Department of Energy's Hanford Site are considered suitable for soil washing because of their relatively low quantities of silt and clay. However, in a limited number of soil washing experiments using soils from different locations in the north pond of the 300 Area, the degree of decontamination achieved for the coarse fraction of the soil varied considerably. Part of this variation appears to be due to the presence of a discrete layer of contaminated sediment found in some of the samples. 7 refs., 2 figs., 4 tabs

  8. Spatiotemporal Dynamics of Soil Penetration Resistance of Recultivated Soil

    Directory of Open Access Journals (Sweden)

    Zadorozhnaya Galina

    2018-03-01

    Full Text Available This article examines changes in the spatial distribution of soil penetration resistance in ordinary chernozem (Calcic Chernozem and in the recultivated soil in 2012 and 2014. The measurements were carried out in the field using an Eijkelkamp penetrometer on a regular grid. The depth of measurement was 50 cm, the interval was 5 cm. The indices of variation of soil penetration resistance in space and time have been determined. The degree of spatial dependence of soil penetration resistance has been determined layer by layer. The nature of temporal dynamics of soil penetration resistance of chernozem and technical soil has been described. A significant positive relationship of the structure of chernozem in the two years of the research has been shown. Significant correlations between the data of different years in the technical soil were found to be mostly negative.

  9. The vulnerability of organic matter in Swiss forest soils

    Science.gov (United States)

    González Domínguez, Beatriz; Niklaus, Pascal A.; Studer, Mirjam S.; Hagedorn, Frank; Wacker, Lukas; Haghipour, Negar; Zimmermann, Stephan; Walthert, Lorenz; Abiven, Samuel; McIntyre, Cameron

    2017-04-01

    that best explained the variability of SOC vulnerability, with alkaline soils being the most vulnerable. This could be explained by the strongest adsorption of nitrogen organic compounds to minerals at lower pH [5]. We conclude that in temperate forests, the control that soil properties exert on SOC dynamics might outweigh the control of climate. Therefore, soil properties should be appropriately represented in Earth system models to obtain more realistic projections under different climate scenarios. 1. Ciais P, Sabine C, Bala G, Bopp L, Brovkin V, Canadell J, et al. Carbon and other biogeochemical cycles. Stocker TF, Qin D, Plattner G-K, Tignor M, Allen SK, Boschung J, et al., editors. Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA; 2013. 2. Luo Y, Ahlström A, Allison SD, Batjes NH, Brovkin V, Carvalhais N, et al. Toward more realistic projections of soil carbon dynamics by Earth system models. Global Biogeochem Cycles. 2016;30: 40-56. doi:10.1002/2015GB005239 3. Wollum A, Gomez J. A conductivity method for measuring microbially evolved carbon dioxide. Ecology. 1970;51: 155-156. doi:10.2307/1933610 4. Raich JW, Tufekciogul A. Vegetation and soil respiration: Correlations and controls. Biogeochemistry. 2000;48: 71-90. doi:10.1023/A:1006112000616 5. Yu WH, Li N, Tong DS, Zhou CH, Lin CX (Cynthia), Xu CY. Adsorption of proteins and nucleic acids on clay minerals and their interactions: A review. Appl Clay Sci. 2013;80-81: 443-452. doi:10.1016/j.clay.2013.06.003

  10. Chemical-Structural Changes of Organic Matter in a Semi-Arid Soil After Organic Amendment

    Institute of Scientific and Technical Information of China (English)

    C.NICOL(A)S; G.MASCIANDARO; T.HERN(A)NDEZ; C.GARCIA

    2012-01-01

    A 9-month incubation experiment using composted and non-composted amendments derived from vine pruning waste and sewage sludge was carried out to study the effects of the nature and stability of organic amendments on the structural composition of organic matter (OM) in a semi-arid soil. The changes of soil OM,both in the whole soil and in the extractable carbon with pyrophosphate,were evaluated by pyrolysis-gas chromatography and chemical analyses.By the end of the experiment,the soils amended with pruning waste exhibited less organic carbon loss than those receiving sewage sludge.The non-composted residues increased the aliphatic-pyrolytic products of the OM,both in the whole soil and also in the pyrophosphate extract,with the products derived from peptides and proteins being significantly higher.After 9 months,in the soils amended with pruning waste the relative abundance of phenolic-pyrolytic products derived from phenolic compounds,lignin and proteins in the whole soil tended to increase more than those in the soils amended with sewage sludge.However,the extractable OM with pyrophosphate in the soils amended with composted residues tended to have higher contents of these phenolic-pyrolytic products than that in non-composted ones.Thus,despite the stability of pruning waste,the composting of this material promoted the incorporation of phenolic compounds to the soil OM.The pyrolytic indices (furfural/pyrrole and aliphatic/aromatic ratios) showed the diminution of aliphatic compounds and the increase of aromatic compounds,indicating the stabilization of the OM in the amended soils after 9 months.In conclusion,the changes of soil OM depend on the nature and stability of the organic amendments,with composted vine pruning waste favouring humification.

  11. Exploring viral diversity in a unique South African soil habitat

    CSIR Research Space (South Africa)

    Segobola, J

    2018-01-01

    Full Text Available Refseq protein data- base (release of 2016-01-19). The results revealed that 37.6% of the contigs represented a significant hit (threshold of 50 on the BLAST bit score). MetaVir identified 18 virus families, in which prokaryotic viruses were the most... metaviromics analyses in soil environments18,20,23,30. This finding was not surprising, given the observations from previous studies35,53 which showed high prokaryotic abundances in the Kogelberg soil environment. Nevertheless, signature sequences from large...

  12. How does soil management affect carbon losses from soils?

    Science.gov (United States)

    Klik, A.; Trümper, G.

    2009-04-01

    Agricultural soils are a major source as well as a sink of organic carbon (OC). Amount and distribution of OC within the soil and within the landscape are driven by land management but also by erosion and deposition processes. At the other hand the type of soil management influences mineralization and atmospheric carbon dioxide losses by soil respiration. In a long-term field experiment the impacts of soil tillage systems on soil erosion processes were investigated. Following treatments were compared: 1) conventional tillage (CT), 2) conservation tillage with cover crop during the winter period (CS), and 3) no-till with cover crop during winter period (NT). The studies were carried out at three sites in the Eastern part of Austria with annual precipitation amounts from 650 to 900 mm. The soil texture ranged from silt loam to loam. Since 2007 soil CO2 emissions are measured with a portable soil respiration system in intervals of about one week, but also in relation to management events. Concurrent soil temperature and soil water content are measured and soil samples are taken for chemical and microbiological analyses. An overall 14-yr. average soil loss between 1.0 t.ha-1.yr-1 for NT and 6.1 t.ha-1.yr-1 for CT resulted in on-site OC losses from 18 to 79 kg ha-1.yr-1. The measurements of the carbon dioxide emissions from the different treatments indicate a high spatial variation even within one plot. Referred to CT plots calculated carbon losses amounted to 65-94% for NT plots while for the different RT plots they ranged between 84 and 128%. Nevertheless site specific considerations have to be taken into account. Preliminary results show that the adaptation of reduced or no-till management strategies has enormous potential in reducing organic carbon losses from agricultural used soils.

  13. Bioavailability of radiocaesium in soil: parameterization using soil characteristics

    Energy Technology Data Exchange (ETDEWEB)

    Syssoeva, A.A.; Konopleva, I.V. [Russian Institute of Agricultural Radiology and Agroecology, Obninsk (Russian Federation)

    2004-07-01

    It has been shown that radiocaesium availability to plants strongly influenced by soil properties. For the best evaluation of TFs it necessary to use mechanistic models that predict radionuclide uptake by plants based on consideration of sorption-desorption and fixation-remobilization of the radionuclide in the soil as well as root uptake processes controlled by the plant. The aim of the research was to characterise typical Russian soils on the basis of the radiocaesium availability. The parameter of the radiocaesium availability in soils (A) has been developed which consist on radiocaesium exchangeability; CF -concentration factor which is the ratio of the radiocaesium in plant to that in soil solution; K{sub Dex} - exchangeable solid-liquid distribution coefficient of radiocaesium. The approach was tested for a wide range of Russian soils using radiocaesium uptake data from a barley pot trial and parameters of the radiocaesium bioavailability. Soils were collected from the arable horizons in different soil climatic zones of Russia and artificially contaminated by {sup 137}Cs. The classification of soils in terms of the radiocaesium availability corresponds quite well to observed linear relationship between {sup 137}Cs TF for barley and A. K{sub Dex} is related to the soil radiocaesium interception potential (RIP), which was found to be positively and strongly related to clay and physical clay (<0,01 mm) content. The {sup 137}Cs exchangeability were found to be in close relation to the soil vermiculite content, which was estimated by the method of Cs{sup +} fixation. It's shown radiocaesium availability to plants in soils under study can be parameterized through mineralogical soil characteristics: % clay and the soil vermiculite content. (author)

  14. Modelling soil organic carbon concentration of mineral soils in arable lands using legacy soil data

    DEFF Research Database (Denmark)

    Suuster, E; Ritz, Christian; Roostalu, H

    2012-01-01

    is appropriate if the study design has a hierarchical structure as in our scenario. We used the Estonian National Soil Monitoring data on arable lands to predict SOC concentrations of mineral soils. Subsequently, the model with the best prediction accuracy was applied to the Estonian digital soil map...

  15. Using USDA's National Cooperative Soil Survey Soil Characterization Data to detect soil change: A cautionary tale

    Science.gov (United States)

    Recently, the USDA-NRCS National Cooperative Soil Survey Soil Characterization Database (NSCD) was reported to provide evidence that total nitrogen (TN) stocks of agricultural soils have increased across the Mississippi basin since 1985. Unfortunately, due to omission of metadata from the NSCD, hist...

  16. Diurnal hysteresis between soil CO2 and soil temperature is controlled by soil water content

    Science.gov (United States)

    Diego A. Riveros-Iregui; Ryan E. Emanuel; Daniel J. Muth; L. McGlynn Brian; Howard E. Epstein; Daniel L. Welsch; Vincent J. Pacific; Jon M. Wraith

    2007-01-01

    Recent years have seen a growing interest in measuring and modeling soil CO2 efflux, as this flux represents a large component of ecosystem respiration and is a key determinant of ecosystem carbon balance. Process-based models of soil CO2 production and efflux, commonly based on soil temperature, are limited by nonlinearities such as the observed diurnal hysteresis...

  17. Degradation of thiram in soil

    International Nuclear Information System (INIS)

    Raghu, K.; Murthy, N.B.K.; Kumarsamy, R.

    1975-01-01

    Determination of the residual 35 S labelled tetramethylthiuram disulfide showed that the fungicide persisted longer in sterilized than in unsterilized soil, while the chloroform extractable radioactivity decreased, the water extractable radioactivity increased with increase in time. However, in sterilized soil the water extractable radioactivity remained more or less constant. Degradation of the fungicide was further demonstrated by the release of C 35 S 2 from soil treated with labelled thiram. Dimethylamine was found to be one of the degradation products. A bacterium isolated from thiram-enriched soil could degrade the fungicide in shake culture. The degradation pathways of thiram in sterilized and unsterilized soils are discussed. (author)

  18. Soil Erosion and Agricultural Sustainability

    Science.gov (United States)

    Montgomery, D. R.

    2009-04-01

    Data drawn from a global compilation of studies support the long articulated contention that erosion rates from conventionally plowed agricultural fields greatly exceed rates of soil production, erosion under native vegetation, and long-term geological erosion. Whereas data compiled from around the world show that soil erosion under conventional agriculture exceeds both rates of soil production and geological erosion rates by up to several orders of magnitude, similar global distributions of soil production and geological erosion rates suggest an approximate balance. Net soil erosion rates in conventionally plowed fields on the order of 1 mm/yr can erode typical hillslope soil profiles over centuries to millennia, time-scales comparable to the longevity of major civilizations. Well-documented episodes of soil loss associated with agricultural activities date back to the introduction of erosive agricultural methods in regions around the world, and stratigraphic records of accelerated anthropogenic soil erosion have been recovered from lake, fluvial, and colluvial stratigraphy, as well as truncation of soil stratigraphy (such as truncated A horizons). A broad convergence in the results from studies based on various approaches employed to study ancient soil loss and rates of downstream sedimentation implies that widespread soil loss has accompanied human agricultural intensification in examples drawn from around the world. While a broad range of factors, including climate variability and society-specific social and economic contexts — such as wars or colonial relationships — all naturally influence the longevity of human societies, the ongoing loss of topsoil inferred from studies of soil erosion rates in conventional agricultural systems has obvious long-term implications for agricultural sustainability. Consequently, modern agriculture — and therefore global society — faces a fundamental question over the upcoming centuries. Can an agricultural system

  19. Microbial Diversity in Cerrado Biome (Neotropical Savanna Soils.

    Directory of Open Access Journals (Sweden)

    Alinne Pereira de Castro

    Full Text Available The Cerrado, the largest savanna region in South America, is located in central Brazil. Cerrado physiognomies, which range from savanna grasslands to forest formations, combined with the highly weathered, acidic clay Cerrado soils form a unique ecoregion. In this study, high-throughput sequencing of ribosomal RNA genes was combined with shotgun metagenomic analysis to explore the taxonomic composition and potential functions of soil microbial communities in four different vegetation physiognomies during both dry and rainy seasons. Our results showed that changes in bacterial, archaeal, and fungal community structures in cerrado denso, cerrado sensu stricto, campo sujo, and gallery forest soils strongly correlated with seasonal patterns of soil water uptake. The relative abundance of AD3, WPS-2, Planctomycetes, Thermoprotei, and Glomeromycota typically decreased in the rainy season, whereas the relative abundance of Proteobacteria and Ascomycota increased. In addition, analysis of shotgun metagenomic data revealed a significant increase in the relative abundance of genes associated with iron acquisition and metabolism, dormancy, and sporulation during the dry season, and an increase in the relative abundance of genes related to respiration and DNA and protein metabolism during the rainy season. These gene functional categories are associated with adaptation to water stress. Our results further the understanding of how tropical savanna soil microbial communities may be influenced by vegetation covering and temporal variations in soil moisture.

  20. Bacterial quorum sensing and nitrogen cycling in rhizosphere soil

    Energy Technology Data Exchange (ETDEWEB)

    DeAngelis, K.M.; Lindow, S.E.; Firestone, M.K.

    2008-10-01

    Plant photosynthate fuels carbon-limited microbial growth and activity, resulting in increased rhizosphere nitrogen (N)-mineralization. Most soil organic N is macromolecular (chitin, protein, nucleotides); enzymatic depolymerization is likely rate-limiting for plant N accumulation. Analyzing Avena (wild oat) planted in microcosms containing sieved field soil, we observed increased rhizosphere chitinase and protease specific activities, bacterial cell densities, and dissolved organic nitrogen (DON) compared to bulk soil. Low-molecular weight DON (<3000 Da) was undetectable in bulk soil but comprised 15% of rhizosphere DON. Extracellular enzyme production in many bacteria requires quorum sensing (QS), cell-density dependent group behavior. Because proteobacteria are considered major rhizosphere colonizers, we assayed the proteobacterial QS signals acyl-homoserine lactones (AHLs), which were significantly increased in the rhizosphere. To investigate the linkage between soil signaling and N cycling, we characterized 533 bacterial isolates from Avena rhizosphere: 24% had chitinase or protease activity and AHL production; disruption of QS in 7 of 8 eight isolates disrupted enzyme activity. Many {alpha}-Proteobacteria were newly found with QS-controlled extracellular enzyme activity. Enhanced specific activities of N-cycling enzymes accompanied by bacterial density-dependent behaviors in rhizosphere soil gives rise to the hypothesis that QS could be a control point in the complex process of rhizosphere N-mineralization.

  1. Study Added of Waste Chicken Egg Shell in Soils

    Directory of Open Access Journals (Sweden)

    Keng Wong Irwan Lie

    2016-01-01

    Full Text Available Soil is the foundation of structure or construction that will receive the load transfer through to foundation. If the soil has a carrying capacity of small and cannot withstand the load transfer can result in the failure of construction. If the soil has a carrying capacity of small ground it is necessary to stabilize or improve the soil so that an increase in the carrying capacity of the land so that it can be used for construction. One material is commonly used for soil stabilization with the addition of lime. Waste chicken egg shell is waste that is still rarely used, the results of research [1], states that composition egg shell broadly consists of water (1,6% and dry material (98,4%. The total dry ingredients are there, in shell eggs contained mineral elements (95,1% and protein (3,3%. Based on the existing mineral composition, then the egg shells are composed of crystalline CaCO3 (98,43%, MgCO3 (0,84% and Ca3(PO42 (0,75%. This research was done by adding powdered chicken egg shell waste in clay with a composition of 5%, 7,5%, 10% and 14% with physical properties test and soil compaction test.

  2. Soil Security Assessment of Tasmania

    Science.gov (United States)

    Field, Damien; Kidd, Darren; McBratney, Alex

    2017-04-01

    The concept of soil security aligns well with the aspirational and marketing policies of the Tasmanian Government, where increased agricultural expansion through new irrigation schemes and multiple-use State managed production forests co-exists beside pristine World Heritage conservation land, a major drawcard of the economically important tourism industry . Regarding the Sustainable Development Gaols (SDG's) this could be seen as a exemplar of the emerging tool for quantification of spatial soil security to effectively protect our soil resource in terms of food (SDG 2.4, 3.9) and water security (SDG 6.4, 6.6), biodiversity maintenance and safeguarding fragile ecosystems (SDG 15.3, 15.9). The recent development and application of Digital Soil Mapping and Assessment capacities in Tasmania to stimulate agricultural production and better target appropriate soil resources has formed the foundational systems that can enable the first efforts in quantifying and mapping Tasmanian Soil Security, in particular the five Soil Security dimensions (Capability, Condition, Capital, Codification and Connectivity). However, to provide a measure of overall soil security, it was necessary to separately assess the State's three major soil uses; Agriculture, Conservation and Forestry. These products will provide an indication of where different activities are sustainable or at risk, where more soil data is needed, and provide a tool to better plan for a State requiring optimal food and fibre production, without depleting its natural soil resources and impacting on the fragile ecosystems supporting environmental benefits and the tourism industry.

  3. NCRP soil contamination task group

    International Nuclear Information System (INIS)

    Jacobs, D.G.

    1987-01-01

    The National Council of Radiation Protection and Measurements (NCRP) has recently established a Task Group on Soil Contamination to describe and evaluate the migration pathways and modes of radiation exposure that can potentially arise due to radioactive contamination of soil. The purpose of this paper is to describe the scientific principles for evaluation of soil contamination which can be used as a basis for derivation of soil contamination limits for specific situations. This paper describes scenarios that can lead to soil contamination, important characteristics of soil contamination, the subsequent migration pathways and exposure modes, and the application of principles in the report in deriving soil contamination limits. The migration pathways and exposure modes discussed in this paper include: direct radiation exposure; and exhalation of gases

  4. Applications of visual soil evaluation

    DEFF Research Database (Denmark)

    Ball, Bruce C; Munkholm, Lars Juhl; Batey, Tom

    2013-01-01

    Working Group F “Visual Soil Examination and Evaluation” (VSEE) was formed over 30 years ago within the International Soil & Tillage Research Organisation (ISTRO) on the initiative of Tom Batey. The objectives of the Working Group are to stimulate interest in field methods of visual-tactile soil...... assessment, to encourage their wider use and to foster international cooperation. The previous main meeting of the group in 2005 at Peronne, France, brought together, for the first time, a group of soil scientists who had each developed a method to evaluate soil structure directly in the field (Boizard et al...... to the re-development of the Peerlkamp numeric method of assessment of soil structure into the Visual Evaluation of Soil Structure (VESS) spade test (Ball et al., 2007 and Guimarães et al., 2011). The meeting also recommended further cooperation between members of the Working Group. The evaluation...

  5. Effects of environmental factors and soil properties on topographic variations of soil respiration

    OpenAIRE

    Tamai, K.

    2010-01-01

    Soil respiration rates were measured along different parts of a slope in (a) an evergreen forest with common brown forest soil and (b) a deciduous forest with immature soil. The effects of soil temperature, soil moisture and soil properties were estimated individually, and the magnitudes of these effects in the deciduous and evergreen forests were compared. In the evergreen forest with common brown forest soil, soil properties had the greatest effect on soil respiration rates, followed by soi...

  6. Physiology-biochemical features of the Raphanus sativus seedlings during cultivation in aqueous extracts from technogenic soils

    Directory of Open Access Journals (Sweden)

    L. V. Shupranova

    2006-03-01

    Full Text Available The soil pollution influence on functional state of the garden radish seedlings is studied. It has been shown that the variability of soil’s mineral composition from different technogenic zones entails active reorganization in a protein system and in antioxidant cell protection from the heavy metals superfluous accumulation in soil as well.

  7. Is there a relationship between earthworm energy reserves and metal availability after exposure to field-contaminated soils?

    International Nuclear Information System (INIS)

    Beaumelle, Léa; Lamy, Isabelle; Cheviron, Nathalie; Hedde, Mickaël

    2014-01-01

    Generic biomarkers are needed to assess environmental risks in metal polluted soils. We assessed the strength of the relationship between earthworm energy reserves and metal availability under conditions of cocktail of metals at low doses and large range of soil parameters. Aporrectodea caliginosa was exposed in laboratory to a panel of soils differing in Cd, Pb and Zn total and available (CaCl 2 and EDTA-extractable) concentrations, and in soil texture, pH, CEC and organic-C. Glycogen, protein and lipid contents were recorded in exposed worms. Glycogen contents were not linked to the explaining variables considered. Variable selection identified CaCl 2 extractable metals concentrations and soil texture as the main factors affecting protein and lipid contents. The results showed opposite effects of Pb and Zn, high inter-individual variability of biomarkers and weak relationships with easily extractable metals. Our results support the lack of genericity of energy reserves in earthworms exposed to field-contaminated soils. - Highlights: • Energy reserves were quantified in earthworms exposed to a wide panel of field soils. • Protein and lipid contents were related to CaCl 2 extractable metals. • Soil texture affected protein and lipid contents. • Energy reserves were highly variable inter-individually. - Earthworm energy reserves response to low doses of available metals is not generic

  8. Soil Water Retention Curve

    Science.gov (United States)

    Johnson, L. E.; Kim, J.; Cifelli, R.; Chandra, C. V.

    2016-12-01

    Potential water retention, S, is one of parameters commonly used in hydrologic modeling for soil moisture accounting. Physically, S indicates total amount of water which can be stored in soil and is expressed in units of depth. S can be represented as a change of soil moisture content and in this context is commonly used to estimate direct runoff, especially in the Soil Conservation Service (SCS) curve number (CN) method. Generally, the lumped and the distributed hydrologic models can easily use the SCS-CN method to estimate direct runoff. Changes in potential water retention have been used in previous SCS-CN studies; however, these studies have focused on long-term hydrologic simulations where S is allowed to vary at the daily time scale. While useful for hydrologic events that span multiple days, the resolution is too coarse for short-term applications such as flash flood events where S may not recover its full potential. In this study, a new method for estimating a time-variable potential water retention at hourly time-scales is presented. The methodology is applied for the Napa River basin, California. The streamflow gage at St Helena, located in the upper reaches of the basin, is used as the control gage site to evaluate the model performance as it is has minimal influences by reservoirs and diversions. Rainfall events from 2011 to 2012 are used for estimating the event-based SCS CN to transfer to S. As a result, we have derived the potential water retention curve and it is classified into three sections depending on the relative change in S. The first is a negative slope section arising from the difference in the rate of moving water through the soil column, the second is a zero change section representing the initial recovery the potential water retention, and the third is a positive change section representing the full recovery of the potential water retention. Also, we found that the soil water moving has traffic jam within 24 hours after finished first

  9. Dynamical soil-structure interactions: influence of soil behaviour nonlinearities

    International Nuclear Information System (INIS)

    Gandomzadeh, Ali

    2011-01-01

    The interaction of the soil with the structure has been largely explored the assumption of material and geometrical linearity of the soil. Nevertheless, for moderate or strong seismic events, the maximum shear strain can easily reach the elastic limit of the soil behavior. Considering soil-structure interaction, the nonlinear effects may change the soil stiffness at the base of the structure and therefore energy dissipation into the soil. Consequently, ignoring the nonlinear characteristics of the dynamic soil-structure interaction (DSSI) this phenomenon could lead to erroneous predictions of structural response. The goal of this work is to implement a fully nonlinear constitutive model for soils into a numerical code in order to investigate the effect of soil nonlinearity on dynamic soil structure interaction. Moreover, different issues are taken into account such as the effect of confining stress on the shear modulus of the soil, initial static condition, contact elements in the soil-structure interface, etc. During this work, a simple absorbing layer method based on a Rayleigh/Caughey damping formulation, which is often already available in existing Finite Element softwares, is also presented. The stability conditions of the wave propagation problems are studied and it is shown that the linear and nonlinear behavior are very different when dealing with numerical dispersion. It is shown that the 10 points per wavelength rule, recommended in the literature for the elastic media is not sufficient for the nonlinear case. The implemented model is first numerically verified by comparing the results with other known numerical codes. Afterward, a parametric study is carried out for different types of structures and various soil profiles to characterize nonlinear effects. Different features of the DSSI are compared to the linear case: modification of the amplitude and frequency content of the waves propagated into the soil, fundamental frequency, energy dissipation in

  10. Soils in art as a teaching tool in soil science

    Science.gov (United States)

    Poch, Rosa M.

    2017-04-01

    The representation of soils in the different artistic expressions occurs much less often than that of other naturalistic scientific disciplines, like botany or zoology, due to the minor perception of soils as a natural body since the humans started to express themselves through art. Nevertheless, painters, writers and even musicians and film directors have been forced to deal with soils in their works, as a component of the landscape and as the main actor of the various soil functions. Even if the artists are not aware of soils in the sense of soil science - a study object - their observation of nature invariably leads to express their properties, the problems due to their misuse or degradation and their management practices. These art works have a great value when teaching soil science to students, because the latter can learn to intepret and go beyond the artist's observation and therefore they can appreciate the perception of soils and soil properties along the history of humankind. Paintings from various periods can be used as exercises, mainly those depicting landscapes or agricultural works. Some examples are Dutch landscape painters, as Brueghel the Young showing detailed soil erosion features; or Wijnants (XVII century) depicting very clear podzols on sand dunes. Also the impressionists (Van Gogh, Cézanne, Gaugin), or the landscapes of the romantic nationalists (XIX- early XX century) show forest or agricultural soils that can be used either to deduce soil forming processes and describe horizons, or to discuss the effectivity of soil management practices (deforestation, burning, plowing, terracing). Also some pieces of literature can be used either for illustrating real soil landscapes and soil-water relationships (Steinbeck's "The Grapes of Wrath") or in case of fiction literature, as exercice for soil mapping (Tolkien's Middle Earth in "The Hobbit" and "The Lord of the Rings"). Films as "The field" (Jim Sheridan, 1990) or "Corn Island" (George Ovasvili

  11. Soil organic matter and soil biodiversity spots in urban and semi urban soils of southeast Mexico

    Science.gov (United States)

    Huerta, Esperanza

    2015-04-01

    We have observed how the constant use of compost or vermicompost has created spots of soil restoration in urban and semiurban soils of Chiapas (Huitepec and Teopisca), increasing soil organic matter amount, soil moisture and soil porosity, and enhancing then the presence of soil biodiversity; for example, in a Milpa with vermicompost (polyculture of Zea mays with Curcubita pepo, and Fasolius vulgaris) we have found a high density of an epigeic earthworm (640 ind.m2), Dichogaster bolahui, not present in the same type of soil just some meters of distance, in an Oak forest, where soil macroinvertebrates abundance decreased drastically. In another ecosystem within a Persea Americana culture, we found how above and below ground soil biodiversity is affected by the use of vermicompost, having clearly different microcosmos with and without vermicompost (30-50% more micro and macro invertebrates with vermicompost). So now in Campeche, within those soils that are classified by the mayas as tzequel, soils not use for agriculture, we have implemented home gardens and school gardens by the use of compost of vermicomposts in urban and semiurban soils. In school gardens (mainly primary schools) students have cultivated several plants with alimentary purposes; teachers have observed how the increase of soil biodiversity by the use of compost or vermicompost has enhanced the curiosity of children, even has promoted a more friendly behavior among students, they have learned how to do compost and how to apply it. Urban and semiurban soils can be modified by the use of compost and vermicompost, and soil biodiversity has extremely increased.

  12. Protein profiles of hatchery egg shell membrane.

    Science.gov (United States)

    Rath, N C; Liyanage, R; Makkar, S K; Lay, J O

    2016-01-01

    Eggshells which consist largely of calcareous outer shell and shell membranes, constitute a significant part of poultry hatchery waste. The shell membranes (ESM) not only contain proteins that originate from egg whites but also from the developing embryos and different contaminants of microbial and environmental origins. As feed supplements, during post hatch growth, the hatchery egg shell membranes (HESM) have shown potential for imparting resistance of chickens to endotoxin stress and exert positive health effects. Considering that these effects are mediated by the bioactive proteins and peptides present in the membrane, the objective of the study was to identify the protein profiles of hatchery eggshell membranes (HESM). Hatchery egg shell membranes were extracted with acidified methanol and a guanidine hydrochloride buffer then subjected to reduction/alkylation, and trypsin digestion. The methanol extract was additionally analyzed by matrix assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-MS). The tryptic digests were analyzed by liquid chromatography and tandem mass spectrometry (LC-MS-MS) to identify the proteins. Our results showed the presence of several proteins that are inherent and abundant in egg white such as, ovalbumin, ovotransferrin, ovocleidin-116, and lysozyme, and several proteins associated with cytoskeletal, cell signaling, antimicrobial, and catalytic functions involving carbohydrate, nucleic acid, and protein metabolisms. There were some blood derived proteins most likely originating from the embryos and several other proteins identified with different aerobic, anaerobic, gram positive, gram negative, soil, and marine bacterial species some commensals and others zoonotic. The variety of bioactive proteins, particularly the cell signaling and enzymatic proteins along with the diverse microbial proteins, make the HESM suitable for nutritional and biological application to improve post hatch immunity of poultry.

  13. Discovering the essence of soil

    Science.gov (United States)

    Frink, D.

    2012-04-01

    Science, and what it can learn, is constrained by its paradigms and premises. Similarly, teaching and what topics can be addressed are constrained by the paradigms and premises of the subject matter. Modern soil science is founded on the five-factor model of Dokuchaev and Jenny. Combined with Retallack's universal definition of soil as geologic detritus affected by weathering and/or biology, modern soil science emphasizes a descriptive rather than an interpretive approach. Modern soil science however, emerged from the study of plants and the need to improve crop yields in the face of chronic and wide spread famine in Europe. In order to teach that dirt is fascinating we must first see soils in their own right, understand their behavior and expand soil science towards an interpretive approach rather than limited as a descriptive one. Following the advice of James Hutton given over two centuries ago, I look at soils from a physiological perspective. Digestive processes are mechanical and chemical weathering, the resulting constituents reformed into new soil constituents (e.g. clay and humus), translocated to different regions of the soil body to serve other physiological processes (e.g. lamellae, argillic and stone-line horizons), or eliminated as wastes (e.g. leachates and evolved gasses). Respiration is described by the ongoing and diurnal exchange of gasses between the soil and its environment. Circulatory processes are evident in soil pore space, drainage capacity and capillary capability. Reproduction of soil is evident at two different scales: the growth of clay crystals (with their capacity for mutation) and repair of disturbed areas such as result from the various pedo-perturbations. The interactions between biotic and abiotic soil components provide examples of both neurological and endocrine systems in soil physiology. Through this change in perspective, both biotic and abiotic soil processes become evident, providing insight into the possible behavior of

  14. Soil biodiversity and soil community composition determine ecosystem multifunctionality

    Science.gov (United States)

    Wagg, Cameron; Bender, S. Franz; Widmer, Franco; van der Heijden, Marcel G. A.

    2014-01-01

    Biodiversity loss has become a global concern as evidence accumulates that it will negatively affect ecosystem services on which society depends. So far, most studies have focused on the ecological consequences of above-ground biodiversity loss; yet a large part of Earth’s biodiversity is literally hidden below ground. Whether reductions of biodiversity in soil communities below ground have consequences for the overall performance of an ecosystem remains unresolved. It is important to investigate this in view of recent observations that soil biodiversity is declining and that soil communities are changing upon land use intensification. We established soil communities differing in composition and diversity and tested their impact on eight ecosystem functions in model grassland communities. We show that soil biodiversity loss and simplification of soil community composition impair multiple ecosystem functions, including plant diversity, decomposition, nutrient retention, and nutrient cycling. The average response of all measured ecosystem functions (ecosystem multifunctionality) exhibited a strong positive linear relationship to indicators of soil biodiversity, suggesting that soil community composition is a key factor in regulating ecosystem functioning. Our results indicate that changes in soil communities and the loss of soil biodiversity threaten ecosystem multifunctionality and sustainability. PMID:24639507

  15. Soil salinity decreases global soil organic carbon stocks.

    Science.gov (United States)

    Setia, Raj; Gottschalk, Pia; Smith, Pete; Marschner, Petra; Baldock, Jeff; Setia, Deepika; Smith, Jo

    2013-11-01

    Saline soils cover 3.1% (397 million hectare) of the total land area of the world. The stock of soil organic carbon (SOC) reflects the balance between carbon (C) inputs from plants, and losses through decomposition, leaching and erosion. Soil salinity decreases plant productivity and hence C inputs to the soil, but also microbial activity and therefore SOC decomposition rates. Using a modified Rothamsted Carbon model (RothC) with a newly introduced salinity decomposition rate modifier and a plant input modifier we estimate that, historically, world soils that are currently saline have lost an average of 3.47 tSOC ha(-1) since they became saline. With the extent of saline soils predicted to increase in the future, our modelling suggests that world soils may lose 6.8 Pg SOC due to salinity by the year 2100. Our findings suggest that current models overestimate future global SOC stocks and underestimate net CO2 emissions from the soil-plant system by not taking salinity effects into account. From the perspective of enhancing soil C stocks, however, given the lower SOC decomposition rate in saline soils, salt tolerant plants could be used to sequester C in salt-affected areas. Copyright © 2012 Elsevier B.V. All rights reserved.

  16. Physiological response and differential leaf proteome pattern in the European invasive Asteraceae Solidago canadensis colonizing a former cokery soil.

    Science.gov (United States)

    Immel, Françoise; Renaut, Jenny; Masfaraud, Jean-François

    2012-02-02

    Derelict contaminated sites are often colonized spontaneously by plant species leading to a vegetal cover thought to limit particle dispersal and polluted water infiltration. Those plants must cope with soil pollutants through tolerance mechanisms that are not yet fully understood. Here, we focused our attention on a particular Asteraceae plant, Solidago canadensis, considered as invasive in Europe. S. canadensis spontaneously growing on either polluted (NM soil) or control soils dumped on experimental plots were studied for their physiological status, oxidative stress and 2D-DIGE of leaf extracts. S. canadensis tolerance to soil pollutants was demonstrated since growth rates, allocation to reproduction ratios and Fv/Fm ratios were similar in plants from control and NM soil. At the cell level, the catalase activity level was increased in plants collected on NM soil while lipoperoxidation was unaffected. Also, the leaf proteomic study revealed thirty down-regulated and sixty-six up-regulated proteins. Abundances of proteins related to oxidative stress, carbohydrate metabolism, ion transport were mainly up-regulated while those of proteins involved in cell cycle and transcription/translation were mostly down-regulated. Proteins associated to protein metabolism were either down- or up-regulated. Considered altogether, we highlighted that S. canadensis exhibited a complex proteome response when experiencing a multicontaminated soil. Copyright © 2011 Elsevier B.V. All rights reserved.

  17. Radon in soil gas

    International Nuclear Information System (INIS)

    Rector, H.E.

    1990-01-01

    This paper presents the results of a technology review conducted to identify and organize the range of options for measuring radon in soil gas as a means to evaluate radon exposure potential in buildings. The main focus of the review includes identifying the following: Measurement of objectives - the specific parameter(s) that each technology is designed to measure( e.g., soil gas concentration, flux density, etc.); Equipment needs -commercial availability of systems and/or components, specifications for fabricated components; Procedural information - documented elements of field and laboratory methodology and quality assurance; Underlying assumptions - conceptual and mathematical models utilized to convert analytical outcomes to estimators of radon. Basic technologies and field data were examined from a generic perspective (e.g., the common denominators of passive detectors, hollow sampling probes, flux monitors)( as well as specific configurations developed by individual investigators (e.g., sample volume, depth) to develop the basis for separating analytical uncertainties form sampling uncertainties

  18. Pneumatic soil removal tool

    International Nuclear Information System (INIS)

    Neuhaus, J.E.

    1992-01-01

    A soil removal tool is provided for removing radioactive soil, rock and other debris from the bottom of an excavation, while permitting the operator to be located outside of a containment for that excavation. The tool includes a fixed jaw, secured to one end of an elongate pipe, which cooperates with a movable jaw pivotably mounted on the pipe. Movement of the movable jaw is controlled by a pneumatic cylinder mounted on the pipe. The actuator rod of the pneumatic cylinder is connected to a collar which is slidably mounted on the pipe and forms part of the pivotable mounting assembly for the movable jaw. Air is supplied to the pneumatic cylinder through a handle connected to the pipe, under the control of an actuator valve mounted on the handle, to provide movement of the movable jaw. 3 figs

  19. Pneumatic soil removal tool

    Science.gov (United States)

    Neuhaus, John E.

    1992-01-01

    A soil removal tool is provided for removing radioactive soil, rock and other debris from the bottom of an excavation, while permitting the operator to be located outside of a containment for that excavation. The tool includes a fixed jaw, secured to one end of an elongate pipe, which cooperates with a movable jaw pivotably mounted on the pipe. Movement of the movable jaw is controlled by a pneumatic cylinder mounted on the pipe. The actuator rod of the pneumatic cylinder is connected to a collar which is slidably mounted on the pipe and forms part of the pivotable mounting assembly for the movable jaw. Air is supplied to the pneumatic cylinder through a handle connected to the pipe, under the control of an actuator valve mounted on the handle, to provide movement of the movable jaw.

  20. Sustainable Soil Management

    DEFF Research Database (Denmark)

    Green, Ole; Evgrafova, Alevtina; Kirkegaard Nielsen, Søren

    management strategies, which consider the site- and field-specific parameters and agricultural machinery’s improvements, it is possible to maximize production and income, while reducing negative environmental impacts and human health issues induced by agricultural activities as well as improving food......Linket til højre henviser til rapporten i trykt format til download. This report provides an overview on new technologies for integrate sustainable and resilient management practices in arable ecosystems for advanced farmers, consultants, NGOs and policy makers. By following sustainable soil...... and soil quality in short- and long-terms. This report also illustrates the importance to combine a system approach for plant production by assessing field readiness, managing in-field traffic management, implementing the sitespecific controlled as well as sensor-controlled seedbed preparation, seeding...

  1. Bioremediation of soils

    International Nuclear Information System (INIS)

    Woodward, D.

    1991-01-01

    Bioremediation of hydrocarbon contaminated soils has evolved from the refinery land treatment units of thirty years ago to the modern slurry reactors of today. Modifications in the process include engineering controls designed to prevent the migration of hydrocarbons into the unsaturated zone, the saturated zone and groundwater, and the atmosphere. Engineering innovations in the area of composting and bioaugmentation that have focused on further process control and the acceleration of the treatment process will form the basis for future improvements in bioremediation technology. Case studies for established methods that have survived this development process and continue to be used as cost effective biological treatments like engineered land farms, soil heap treatment and in situ treatment will be discussed

  2. Isolation and identification of soil fungi isolates from forest soil for flooded soil recovery

    Science.gov (United States)

    Hazwani Aziz, Nor; Zainol, Norazwina

    2018-04-01

    Soil fungi have been evaluated for their ability in increasing and recovering nitrogen, phosphorus and potassium content in flooded soil and in promoting the growth of the host plant. Host plant was cultivated in a mixture of fertile forest soil (nutrient-rich soil) and simulated flooded soil (nutrient-poor soil) in an optimized soil condition for two weeks. The soil sample was harvested every day until two weeks of planting and was tested for nitrogen, phosphorus and potassium concentration. Soil fungi were isolated by using dilution plating technique and was identified by Biolog’s Microbial Systems. The concentration of nitrogen, phosphorus, and potassium was found to be increasing after two weeks by two to three times approximately from the initial concentration recorded. Two fungi species were identified with probability more than 90% namely Aspergillus aculeatus and Paecilomyces lilacinus. Both identified fungi were found to be beneficial in enhancing plant growth and increasing the availability of nutrient content in the soil and thus recovering the nutrient content in the flooded soil.

  3. Stripping away the soil

    OpenAIRE

    Bartelme, Ryan P.; Oyserman, Ben O.; Blom, Jesse E.; Sepulveda-Villet, Osvaldo J.; Newton, Ryan J.

    2018-01-01

    As the processes facilitated by plant growth promoting microorganisms (PGPMs) become better characterized, it is evident that PGPMs may be critical for successful sustainable agricultural practices. Microbes enrich plant growth through various mechanisms, such as enhancing resistance to disease and drought, producing beneficial molecules, and supplying nutrients and trace metals to the plant rhizosphere. Previous studies of PGPMs have focused primarily on soil-based crops. In contrast, aquapo...

  4. Food, soil, and agriculture

    International Nuclear Information System (INIS)

    Bommer, D.F.R.; Hrabovszky, J.P.

    1981-01-01

    The growing pressures on the world's land resources will result in problems requiring a major research effort.The first group of problems relates to increased soil degradation. The research to alleviate this will have to incorporate not only physical and biological solutions, but also pay much more attention to the socio-economic context in which the conservation programmes need to succeed.The second major area for research on land resource is to make better use of low-capacity or problem soils.This could be by reducing the existing limitations, such as changing physical or chemical characteristics of the soil, or by developing plants and production techniques which reduce the detrimental effects of constraints. Example of these are acidity, salinity, and aluminium toxicity. Finally the broadest and more important area is that of research to enable more intensive use of better-quality land. Research topics here may relate to optimal plant nutrient management, soil moisture management, and developing cultivation techniques with minimum commercial energy requirements. Making plants more productive will involve research aimed at increasing photosynthetic efficiency, nitrogen fixation, disease and pest resistance, improved weed control, and bio-engineering to adjust plant types to maximize production potentials. Improved rotational systems for the achievement of many of the above goals will become increasingly important, as the potential problems or inappropriate cultivation practices become evident. In conclusion, food supplies of the world could meet the rapidly rising demands that are made on them, if agriculture receives sufficient attention and resources. Even with most modern development, land remains the base for agriculture, and optimal use of the world's land resources is thus crucial for future agricultural production

  5. Soil physical properties on Venezuelan steeplands: Applications to soil conservation planning

    International Nuclear Information System (INIS)

    Delgado, F.

    2004-01-01

    This paper presents a framework to support decision making for soil conservation on Venezuelan steeplands. The general approach is based on the evaluation of two important land qualities: soil productivity and soil erosion risk, both closely related to soil physical properties. Soil productivity can be estimated from soil characteristics such as soil air-water relationships, soil impedances and soil fertility. On the other hand, soil erosion risk depends basically on soil hydrologic properties, rainfall aggressiveness and terrain slope. Two indexes are obtained from soil and land characteristics: soil productivity index (PI) and erosion risk index (ERI), each one evaluates the respective land quality. Subsequently, a matrix with these two qualities shows different land classes as well as soil conservation priorities, conservation requirements and proposed land uses. The paper shows also some applications of the soil productivity index as an approach to evaluate soil loss tolerance for soil conservation programs on tropical steeplands. (author)

  6. Impacts of soil moisture content on visual soil evaluation

    Science.gov (United States)

    Emmet-Booth, Jeremy; Forristal, Dermot; Fenton, Owen; Bondi, Giulia; Creamer, Rachel; Holden, Nick

    2017-04-01

    Visual Soil Examination and Evaluation (VSE) techniques offer tools for soil quality assessment. They involve the visual and tactile assessment of soil properties such as aggregate size and shape, porosity, redox morphology, soil colour and smell. An increasing body of research has demonstrated the reliability and utility of VSE techniques. However a number of limitations have been identified, including the potential impact of soil moisture variation during sampling. As part of a national survey of grassland soil quality in Ireland, an evaluation of the impact of soil moisture on two widely used VSE techniques was conducted. The techniques were Visual Evaluation of Soil Structure (VESS) (Guimarães et al., 2011) and Visual Soil Assessment (VSA) (Shepherd, 2009). Both generate summarising numeric scores that indicate soil structural quality, though employ different scoring mechanisms. The former requires the assessment of properties concurrently and the latter separately. Both methods were deployed on 20 sites across Ireland representing a range of soils. Additional samples were taken for soil volumetric water (θ) determination at 5-10 and 10-20 cm depth. No significant correlation was observed between θ 5-10 cm and either VSE technique. However, VESS scores were significantly related to θ 10-20 cm (rs = 0.40, sig = 0.02) while VSA scores were not (rs = -0.33, sig = 0.06). VESS and VSA scores can be grouped into quality classifications (good, moderate and poor). No significant mean difference was observed between θ 5-10 cm or θ 10-20 cm according to quality classification by either method. It was concluded that VESS scores may be affected by soil moisture variation while VSA appear unaffected. The different scoring mechanisms, where the separate assessment and scoring of individual properties employed by VSA, may limit soil moisture effects. However, moisture content appears not to affect overall structural quality classification by either method. References

  7. Radionuclide migration in soils

    Energy Technology Data Exchange (ETDEWEB)

    Demir, M [Ingenieurgesellschaft Bonnenberg und Drescher, Juelich (Germany, F.R.)

    1979-01-01

    Unplanned releases from a nuclear installation - e.g., leakage from a storage tank or other incident - can result in the escape of contaminants such as U, Pu, Cs, Sr, T etc. Nuclide transport through the ground is governed by characteristics of the subsurface hydrology and the specific nuclides under consideration. Unsaturated soil layers result in a transport rate so low as to negligible. Radionuclides reaching the ground water are assumed to endanger human life because of potential uncontrolled ingestion. The most dangerous nuclides are long-lived and not absorbed, or very poorly absorbed, in the soil. During migration of nuclides through saturated soil layers, the concentration can be reduced by dilution. Preliminary results indicate that tritium is spread with ground water velocity. Its concentration can be reduced only by diffusion, dispersion and radioactive decay. Alpha-emitters are strongly retained velocities of alpha-emitters are approximately one thousandth (10/sup -3/) that of T. Transport velocities of Cs and Sr are approximately one hundreth (10/sup -2/) and one tenth (10/sup -1/) that of T respectively.

  8. Radionuclide migration in soils

    International Nuclear Information System (INIS)

    Demir, M.

    1979-01-01

    Unplanned releases from a nuclear installation - e.g., leakage from a storage tank or other incident - can result in the escape of contaminants such as U, Pu, Cs, Sr, T etc. Nuclide transport through the ground is governed by characteristics of the subsurface hydrology and the specific nuclides under consideration. Unsaturated soil layers result in a transport rate so low as to negligible. Radionuclides reaching the ground water are assumed to endanger human life because of potential uncontrolled ingestion. The most dangerous nuclides are long-lived and not absorbed, or very poorly absorbed, in the soil. During migration of nuclides through saturated soil layers, the concentration can be reduced by dilution. Preliminary results indicate that tritium is spread with ground water velocity. Its concentration can be reduced only by diffusion, dispersion and radioactive decay. Alpha-emitters are strongly retained velocities of alpha-emitters are approximately one thousandth (10 -3 ) that of T. Transport velocities of Cs and Sr are approximately one hundreth (10 -2 ) and one tenth (10 -1 ) that of T respectively. (orig./HP) [de

  9. GEOPHYSICAL PROPERTIES OF SOILS

    KAUST Repository

    Santamarina, Carlos

    2016-12-01

    Low energy perturbations used in geophysical methods provide insightful information about constant-fabric soil properties and their spatial variability. There are causal links between soil type, index properties, elastic wave velocity, electromagnetic wave parameters and thermal properties. Soil type relates to the stress-dependent S-wave velocity, thermal and electrical conductivity and permittivity. The small strain stiffness reflects the state of stress, the extent of diagenetic cementation and/or freezing. Pore fluid chemistry, fluid phase and changes in either fluid chemistry or phase manifest through electromagnetic measurements. The volumetric water content measured with electromagnetic techniques is the best predictor of porosity if the water saturation is 100%. Changes in water saturation alter the P-wave velocity when Srà100%, the S-wave velocity at intermediate saturations, and the thermal conductivity when the saturation is low Srà0%. Finally, tabulated values suffice to estimate heat capacity and latent heat for engineering design, however thermal conductivity requires measurements under proper field conditions.

  10. Soil compaction: Evaluation of stress transmission and resulting soil structure

    DEFF Research Database (Denmark)

    Naveed, Muhammad; Schjønning, Per; Keller, Thomas

    strength. As soon as the applied load is lower than the aggregate strength, the mode of stress transmission is discrete as stresses were mainly transmitted through chain of aggregates. With increasing applied load soil aggregates start deforming that transformed heterogeneous soil into homogenous......, as a result stress transmission mode was shifted from discrete towards more like a continuum. Continuum-like stress transmission mode was better simulated with Boussinesq (1885) model based on theory of elasticity compared to discrete. The soil-pore structure was greatly affected by increasing applied...... and compaction-resulted soil structure at the same time. Stress transmission was quantified using both X-ray CT and Tactilus sensor mat, and soil-pore structure was quantified using X-ray CT. Our results imply that stress transmission through soil highly depends on the magnitude of applied load and aggregate...

  11. Pedotransfer functions estimating soil hydraulic properties using different soil parameters

    DEFF Research Database (Denmark)

    Børgesen, Christen Duus; Iversen, Bo Vangsø; Jacobsen, Ole Hørbye

    2008-01-01

    Estimates of soil hydraulic properties using pedotransfer functions (PTF) are useful in many studies such as hydrochemical modelling and soil mapping. The objective of this study was to calibrate and test parametric PTFs that predict soil water retention and unsaturated hydraulic conductivity...... parameters. The PTFs are based on neural networks and the Bootstrap method using different sets of predictors and predict the van Genuchten/Mualem parameters. A Danish soil data set (152 horizons) dominated by sandy and sandy loamy soils was used in the development of PTFs to predict the Mualem hydraulic...... conductivity parameters. A larger data set (1618 horizons) with a broader textural range was used in the development of PTFs to predict the van Genuchten parameters. The PTFs using either three or seven textural classes combined with soil organic mater and bulk density gave the most reliable predictions...

  12. Making sense of soil ecotoxicology

    Science.gov (United States)

    Beyer, W. Nelson; Linder, Greg L.; Hoffman, David J.; Rattner, Barnett A.; Burton, G. Allen; Cairns, John

    1995-01-01

    The toxicity of pesticides and environmental contaminants to soil organisms has been measured in studies on earthworms,1 soil arthropods,3-6 soil microorganisms,7 and other soil organisms.8 Toxicity data on earthworms produced in the pesticide registration procedure required by the OECD (Organization for economic cooperation and Development) will provide data on many additional chemicals.9 Deciding how to use the data generated is troublesome. In 1965, Edwards10 suggested that the effects of soil insecticides on soils may remain long after the pesticides have disappeared, and that it was clear that pesticides could drastically change the populations of soil organisms; Edwards noted, however, that the effects did not seem to be serious when compared with the benefits to crop production of using pesticides. Since 1965, many studies have been conducted on changes in soil ecosystems caused by environmental contaminants, but we still know little about what the toxicity to particular groups of soil organisms means to the functioning of the soil ecosystem. the problem was illustrated in discussions at the International Conference on Earthworm Ecotoxicology in Sheffield, England, in 1991. there was general agreement that earthworms ahould be taken into account when evaluating pesticides. However, it was unclear what level of reduction in earthworm populations would reduce soil quality or crop yeild. Because populations of earthworms naturally fluctuate greatly even in the absence of pesticides, and because some soils are fertile without any earthworms, it is difficult to equate their population decreases with damage to the soil ecosystem. Broadbent and Tomlin found that the insecticide carbofuran caused fluctuations in the populations of some microarthropods in a cornfield but, in comparing the effects to those of cultivation or adding compost, they concluded that it was unlikely that litter decomposition was significantly affected.3

  13. A Handbook on Artificial Soils for Indoor Photovoltaic Soiling Tests

    Energy Technology Data Exchange (ETDEWEB)

    Burton, Patrick D. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); King, Bruce Hardison [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2014-10-01

    This manuscript is intended to serve as a practical guide to conducting repeatable indoor soiling experiments for PV applications. An outline of techniques, materials and equipment used in prior studies [1-3] is presented. Additional recommendations and practical guidance has been presented. Major sections include techniques to formulate soil simulants, ('standard grime') and feedstocks from traceable components, spray application, and quantitative measurement methodologies at heavy and minimal soil loadings.

  14. Soil compaction: Evaluation of stress transmission and resulting soil structure

    Science.gov (United States)

    Naveed, Muhammad; Schjønning, Per; Keller, Thomas; Lamande, Mathieu

    2016-04-01

    Accurate estimation of stress transmission and resultant deformation in soil profiles is a prerequisite for the development of predictive models and decision support tools for preventing soil compaction. Numerous studies have been carried out on the effects of soil compaction, whilst relatively few studies have focused on the cause (mode of stress transmission in the soil). We have coupled both cause and effects together in the present study by carrying out partially confined compression tests on (1) wet aggregates, (2) air dry aggregates, and (3) intact soils to quantify stress transmission and compaction-resulted soil structure at the same time. Stress transmission was quantified using both X-ray CT and Tactilus sensor mat, and soil-pore structure was quantified using X-ray CT. Our results imply that stress transmission through soil highly depends on the magnitude of applied load and aggregate strength. As soon as the applied load is lower than the aggregate strength, the mode of stress transmission is discrete as stresses were mainly transmitted through chain of aggregates. With increasing applied load soil aggregates start deforming that transformed heterogeneous soil into homogenous, as a result stress transmission mode was shifted from discrete towards more like a continuum. Continuum-like stress transmission mode was better simulated with Boussinesq (1885) model based on theory of elasticity compared to discrete. The soil-pore structure was greatly affected by increasing applied stresses. Total porosity was reduced 5-16% and macroporosity 50-85% at 620 kPa applied stress for the intact soils. Similarly, significant changes in the morphological indices of the macropore space were also observed with increasing applied stresses.

  15. Protein Tunnels: The Case of Urease Accessory Proteins.

    Science.gov (United States)

    Musiani, Francesco; Gioia, Dario; Masetti, Matteo; Falchi, Federico; Cavalli, Andrea; Recanatini, Maurizio; Ciurli, Stefano

    2017-05-09

    Transition metals are both essential micronutrients and limited in environmental availability. The Ni(II)-dependent urease protein, the most efficient enzyme known to date, is a paradigm for studying the strategies that cells use to handle an essential, yet toxic, metal ion. Urease is a virulence factor of several human pathogens, in addition to decreasing the efficiency of soil organic nitrogen fertilization. Ni(II) insertion in the urease active site is performed through the action of three essential accessory proteins: UreD, UreF, and UreG. The crystal structure of the UreD-UreF-UreG complex from the human pathogen Helicobacter pylori (HpUreDFG) revealed the presence of tunnels that cross the entire length of both UreF and UreD, potentially able to deliver Ni(II) ions from UreG to apo-urease. Atomistic molecular dynamics simulations performed on the HpUreDFG complex in explicit solvent and at physiological ionic conditions demonstrate the stability of these protein tunnels in solution and provide insights on the trafficking of water molecules inside the tunnels. The presence of different alternative routes across the identified tunnels for Ni(II) ions, water molecules, and carbonate ions, all involved in urease activation, is highlighted here, and their potential role in the urease activation mechanism is discussed.

  16. Complex linkage between soil, soil water, atmosphere and Eucalyptus Plantations

    Science.gov (United States)

    Shukla, C.; Tiwari, K. N.

    2017-12-01

    Eucalyptus is most widely planted genus grown in waste land of eastern region of India to meet the pulp industry requirements. Sustainability of these plantations is of concern because in spite of higher demand water and nutrients of plantations, they are mostly planted on low-fertility soils. This study has been conducted to quantify effect of 25 years old, a fully established eucalyptus plantations on i.) Alteration in physico-chemical and hydrological properties of soil of eucalyptus plantation in comparison to soil of natural grassland and ii.) Spatio-temporal variation in soil moisture under eucalyptus plantations. Soil physico-chemical properties of two adjacent plots covered with eucatuptus and natural grasses were analyzed for three consecutive depths (i.e. 0-30 cm, 30-60 cm and 60-90 cm) with five replications in each plot. Soil infiltration rate and saturated hydraulic conductivity (Ks) were measured in-situ to incorporate the influence of macro porosity caused due to roots of plantations. Daily soil moisture at an interval of 10 cm upto 160 cm depth with 3 replications and Leaf Area Index (LAI) at an interval of 15 days with 5 replications were recorded over the year. Significant variations found at level of 0.05 between soil properties of eucalyptus and natural grass land confirm the effect of plantations on soil properties. Comparative results of soil properties show significant alteration in soil texture such as percent of sand, organic matter and Ks found more by 20%, 9% and 22% respectively in eucalyptus plot as compare to natural grass land. Available soil moisture (ASM) was found constantly minimum in top soil excluding rainy season indicate upward movement of water and nutrients during dry season. Seasonal variation in temperature (T), relative humidity (RH) and leaf area index (LAI) influenced the soil moisture extraction phenomenon. This study clearly stated the impact of long term establishment of eucalyptus plantations make considerable

  17. The effect of intrinsic soil properties on soil quality assessments

    Directory of Open Access Journals (Sweden)

    Alessandro Samuel-Rosa

    2013-10-01

    Full Text Available The assessment of soil quality is based on indicators and indices derived from soil properties. However, intrinsic soil properties may interfere with other soil properties that vary under different land uses and are used to calculate the indices. The aim of this study was to assess the extent to which intrinsic soil properties (clay and iron oxide contents explain variable soil properties (sum of bases, potential acidity, organic carbon, total porosity, and bulk density under different land uses (native forest, no-tillage and conventional agriculture on small family farms in Southern Brazil. The results showed that the five properties evaluated can be included in soil quality assessments and are not influenced by the clay and iron oxide contents. It was concluded that for little weathered 1:1 and 2:1 phyllosilicate rich-soils, if the difference between the maximum and the minimum clay content under the different land uses is less than about 200 g kg-1 and the iron oxide content less than about 15 g kg-1, the physico-chemical soil properties in the surface layer are determined mostly by the land use.

  18. Remediation of soils combining soil vapor extraction and bioremediation: benzene.

    Science.gov (United States)

    Soares, António Alves; Albergaria, José Tomás; Domingues, Valentina Fernandes; Alvim-Ferraz, Maria da Conceição M; Delerue-Matos, Cristina

    2010-08-01

    This work reports the study of the combination of soil vapor extraction (SVE) with bioremediation (BR) to remediate soils contaminated with benzene. Soils contaminated with benzene with different water and natural organic matter contents were studied. The main goals were: (i) evaluate the performance of SVE regarding the remediation time and the process efficiency; (ii) study the combination of both technologies in order to identify the best option capable to achieve the legal clean up goals; and (iii) evaluate the influence of soil water content (SWC) and natural organic matter (NOM) on SVE and BR. The remediation experiments performed in soils contaminated with benzene allowed concluding that: (i) SVE presented (a) efficiencies above 92% for sandy soils and above 78% for humic soils; (b) and remediation times from 2 to 45 h, depending on the soil; (ii) BR showed to be an efficient technology to complement SVE; (iii) (a) SWC showed minimum impact on SVE when high airflow rates were used and led to higher remediation times for lower flow rates; (b) NOM as source of microorganisms and nutrients enhanced BR but hindered the SVE due the limitation on the mass transfer of benzene from the soil to the gas phase. (c) 2010 Elsevier Ltd. All rights reserved.

  19. Derivation of Soil Ecological Criteria for Copper in Chinese Soils.

    Science.gov (United States)

    Wang, Xiaoqing; Wei, Dongpu; Ma, Yibing; McLaughlin, Mike J

    2015-01-01

    Considerable information on copper (Cu) ecotoxicity as affected by biological species and abiotic properties of soils has been collected from the last decade in the present study. The information on bioavailability/ecotoxicity, species sensitivity and differences in laboratory and field ecotoxicity of Cu in different soils was collated and integrated to derive soil ecological criteria for Cu in Chinese soils, which were expressed as predicted no effect concentrations (PNEC). First, all ecotoxicity data of Cu from bioassays based on Chinese soils were collected and screened with given criteria to compile a database. Second, the compiled data were corrected with leaching and aging factors to minimize the differences between laboratory and field conditions. Before Cu ecotoxicity data were entered into a species sensitivity distribution (SSD), they were normalized with Cu ecotoxicity predictive models to modify the effects of soil properties on Cu ecotoxicity. The PNEC value was set equal to the hazardous concentration for x% of the species (HCx), which could be calculated from the SSD curves, without an additional assessment factor. Finally, predictive models for HCx based on soil properties were developed. The soil properties had a significant effect on the magnitude of HCx, with HC5 varying from 13.1 mg/kg in acidic soils to 51.9 mg/kg in alkaline non-calcareous soils. The two-factor predictive models based on soil pH and cation exchange capacity could predict HCx with determination coefficients (R2) of 0.82-0.91. The three-factor predictive models--that took into account the effect of soil organic carbon--were more accurate than two-factor models, with R2 of 0.85-0.99. The predictive models obtained here could be used to calculate soil-specific criteria. All results obtained here could provide a scientific basis for revision of current Chinese soil environmental quality standards, and the approach adopted in this study could be used as a pragmatic framework for

  20. Soil Properties Database of Spanish Soils Volume III.- Extremadura

    International Nuclear Information System (INIS)

    Trueba, C; Millan, R.; Schmid, T.; Roquero, C; Magister, M.

    1998-01-01

    The soil vulnerability determines the sensitivity of the soil after an accidental radioactive contamination due to Cs-13 7 and Sr-90. The Departamento de Impacto Ambiental de la Energia of CIEMAT is carrying out an assessment of the radiological vulnerability of the different Spanish soils found on the Iberian Peninsula. This requires the knowledge of the soil properties for the various types of existing soils. In order to achieve this aim, a bibliographical compilation of soil profiles has been made to characterize the different soil types and create a database of their properties. Depending on the year of publication and the type of documentary source, the information compiled from the available bibliography is very heterogeneous. Therefore, an important effort has been made to normalize and process the information prior to its incorporation to the database. This volume presents the criteria applied to normalized and process the data as well as the soil properties of the various soil types belonging to the Comunidad Autonoma de Extremadura. (Author) 50 refs

  1. Soil protists: a fertile frontier in soil biology research.

    Science.gov (United States)

    Geisen, Stefan; Mitchell, Edward A D; Adl, Sina; Bonkowski, Michael; Dunthorn, Micah; Ekelund, Flemming; Fernández, Leonardo D; Jousset, Alexandre; Krashevska, Valentyna; Singer, David; Spiegel, Frederick W; Walochnik, Julia; Lara, Enrique

    2018-05-01

    Protists include all eukaryotes except plants, fungi and animals. They are an essential, yet often forgotten, component of the soil microbiome. Method developments have now furthered our understanding of the real taxonomic and functional diversity of soil protists. They occupy key roles in microbial foodwebs as consumers of bacteria, fungi and other small eukaryotes. As parasites of plants, animals and even of larger protists, they regulate populations and shape communities. Pathogenic forms play a major role in public health issues as human parasites, or act as agricultural pests. Predatory soil protists release nutrients enhancing plant growth. Soil protists are of key importance for our understanding of eukaryotic evolution and microbial biogeography. Soil protists are also useful in applied research as bioindicators of soil quality, as models in ecotoxicology and as potential biofertilizers and biocontrol agents. In this review, we provide an overview of the enormous morphological, taxonomical and functional diversity of soil protists, and discuss current challenges and opportunities in soil protistology. Research in soil biology would clearly benefit from incorporating more protistology alongside the study of bacteria, fungi and animals.

  2. Soil Properties Database of Spanish Soils. Volume V.- Madrid

    International Nuclear Information System (INIS)

    Trueba, C.; Millan, R.; Schmid, T.; Roquero, C.; Magister, M.

    1998-01-01

    The soil vulnerability determines the sensitivity of the soil after an accidental radioactive contamination due to Cs-137 and Sr-90. The Departamento de Impacto Ambiental de la Energia of CIEMAT is carrying out an assessment of the radiological vulnerability of the different Spanish soils found on the Iberian Peninsula. This requires the knowledge of the soil properties for the various types of existing soils. In order to achieve this aim, a bibliographical compilation of soil profiles has been made to characterize the different soil types and create a database of their properties. Depending on the year of publication and the type of documentary source, the information compiled from the available bibliography is very heterogeneous. Therefore, an important effort has been made to normalize and process the information prior to its incorporation to the database. This volume presents the criteria applied to normalize and process the data as well as the soil properties of the various soil types belonging to the Comunidad Autonoma de Madrid. (Author) 39 refs

  3. Soil Properties Database of Spanish Soils. Volume XV.- Aragon

    International Nuclear Information System (INIS)

    Trueba, C; Millan, R.; Schmid, T.; Lago, C.; Roquero, C; Magister, M.

    1999-01-01

    The soil vulnerability determines the sensitivity of the soil after an accidental radioactive contamination due to Cs-137 and Sr-90. The Departamento de Impacto Ambiental de la Energia of CIEMAT is carrying out an assessment of the radiological vulnerability of the different Spanish soils found on the Iberian Peninsula. This requires the knowledge of the soil properties for the various types of existing soils. In order to achieve this aim, a bibliographical compilation of soil profiles has been made to characterize the different soil types and create a database of their properties. Depending on the year of publication and the type of documentary source, the information compiled from the available bibliography is very heterogeneous. Therefore, an important effort has been made to normalize and process the information prior to its incorporation to the database. This volume presents the criteria applied to normalize and process the data as well as the soil properties of the various soil types belonging to the Comunidad Autonoma of Aragon. (Author) 47 refs

  4. Soil Properties Database of Spanish Soils Volume I.-Galicia

    International Nuclear Information System (INIS)

    Trueba, C.; Millan, R.; Schmid, T.; Roquero, C.; Magister, M.

    1998-01-01

    The soil vulnerability determines the sensitivity of the soil after an accidental radioactive contamination due to Cs-13 7 and Sr-90. The Department de Impacto Ambiental de la Energia of CIEMAT is carrying out an assessment of the radiological vulnerability of the different Spanish soils found on the Iberian Peninsula. This requires the knowledge of the soil properties for the various types of existing soils. In order to achieve this aim. a bibliographical compilation of soil profiles has been made to characterize the different soil types and create a database of their properties. Depending on the year of publication and the type of documentary)' source, the information compiled from the available bibliography is very heterogeneous. Therefore, an important effort has been made to normalize and process the information prior to its incorporation to the database. This volume presents the criteria applied to normalize and process the data as well as the soil properties of the various soil types belonging to the Comunidad Autonoma de Galicia

  5. Soil Properties Database of Spanish Soils. Volume XIV.- Cataluna

    International Nuclear Information System (INIS)

    Trueba, C; Millan, R.; Schmid, T.; Lago, C.; Roquero, C; Magister, M.

    1999-01-01

    The soil vulnerability determines the sensitivity of the soil after an accidental radioactive contamination due to Cs-137 and Sr-90. The Departamento de Impacto Ambiental de la Energia of CIEMAT is carrying out an assessment of the radiological vulnerability of the different Spanish soils found on the Iberian Peninsula. This requires the knowledge of the soil properties for the various types of existing soils. In order to achieve this aim, a bibliographical compilation of soil profiles has been made to characterize the different soil types and create a database of their properties. Depending on the year of publication and the type of documentary source, the information compiled from the available bibliography is very heterogeneous. Therefore, an important effort has been made to normalize and process the information prior to its incorporation to the database. This volume presents the criteria applied to normalize and process the data as well as the soil properties of the various soil types belonging to the Comunidad Autonoma of Cataluna. (Author) 57 refs

  6. The E5 Proteins

    OpenAIRE

    DiMaio, Daniel; Petti, Lisa

    2013-01-01

    The E5 proteins are short transmembrane proteins encoded by many animal and human papillomaviruses. These proteins display transforming activity in cultured cells and animals, and they presumably also play a role in the productive virus life cycle. The E5 proteins are thought to act by modulating the activity of cellular proteins. Here, we describe the biological activities of the best-studied E5 proteins and discuss the evidence implicating specific protein targets and pathways in mediating ...

  7. EDITORIAL: Precision proteins Precision proteins

    Science.gov (United States)

    Demming, Anna

    2010-06-01

    Since the birth of modern day medicine, during the times of Hippocrates in ancient Greece, the profession has developed from the rudimentary classification of disease into a rigorous science with an inspiring capability to treat and cure. Scientific methodology has distilled clinical diagnostic tools from the early arts of prognosis, which used to rely as much on revelation and prophecy, as intuition and judgement [1]. Over the past decade, research into the interactions between proteins and nanosystems has provided some ingenious and apt techniques for delving into the intricacies of anatomical systems. In vivo biosensing has emerged as a vibrant field of research, as much of medical diagnosis relies on the detection of substances or an imbalance in the chemicals in the body. The inherent properties of nanoscale structures, such as cantilevers, make them well suited to biosensing applications that demand the detection of molecules at very low concentrations. Measurable deflections in cantilevers functionalised with antibodies provide quantitative indicators of the presence of specific antigens when the two react. Such developments have roused mounting interest in the interactions of proteins with nanostructures, such as carbon nanotubes [3], which have demonstrated great potential as generic biomarkers. Plasmonic properties are also being exploited in sensing applications, such as the molecular sentinel recently devised by researchers in the US. The device uses the plasmonic properties of a silver nanoparticle linked to a Raman labelled hairpin DNA probe to signal changes in the probe geometry resulting from interactions with substances in the environment. Success stories so far include the detection of two specific genes associated with breast cancer [4]. A greater understanding of how RNA interference regulates gene expression has highlighted the potential of using this natural process as another agent for combating disease in personalized medicine. However, the

  8. Silvicultural practices and soil protection

    International Nuclear Information System (INIS)

    Ranger, Jacques; Nys, Claude; Legout, Arnaud; Dambrine, Etienne; Augusto, Laurent; Berthelot, Alain; Bouchon, Jean; Ottorini, Jean-Marc; Cacot, Emmanuel; Gavaland, Andre; Laclau, Jean-Paul; Saint-Andre, Laurent; Nicolas, Manuel; Ponette, Quentin

    2011-01-01

    The purpose of this work is to assess the risks deriving from current forestry practices on the sustainability of soil function and ecosystems. The relationship between the production function and the soil conservation function translates as a certain conflict between these two options. Stresses on the chemical fertility of the soil were analysed from the least intensive to the most intensive treatments, i.e. from forest reserves to very short rotation, treated lignocellulosic crops. Under the extensive systems, high grade biological recycling is sustainable if logging is confined to trunks alone. Dressings can correct the slow but inevitable acidification of soils. When treatments are intensive, the natural fertility of forest soils cannot sustain production; only soils with suitable physical qualities combined with application of appropriate inputs enable sustained high levels of output to be achieved, in particular under the short rotation systems. (authors)

  9. Sustainable agriculture and soil conservation

    DEFF Research Database (Denmark)

    Olsen, Preben; Dubgaard, Alex

    , sandy soils in the West, (that had not been covered by ice) from more fertile soils being mostly sandy loams and finer textured soils covering the Eastern part of the study area. Several geological features such as pitting due to dead ice formation, smaller, terminal moraines in association with melt......, separate the moraine plateau. From the plateau several, minor erosion valleys, formed at the end of the glaciation some 10,000 years ago, feed into the two valleys. Very accurate soil type information is available for the area as intensive measurements within the area has formed the basis for a new...... methodology for soil classification in Denmark. The soil survey included a detailed mapping at field level, using the electromagnetic sensor, EM38. A high-resolution digital elevation model, obtained by use of laser scanning, is available for the study area. The original scanning has a horizontal resolution...

  10. Physical root-soil interactions

    Science.gov (United States)

    Kolb, Evelyne; Legué, Valérie; Bogeat-Triboulot, Marie-Béatrice

    2017-12-01

    Plant root system development is highly modulated by the physical properties of the soil and especially by its mechanical resistance to penetration. The interplay between the mechanical stresses exerted by the soil and root growth is of particular interest for many communities, in agronomy and soil science as well as in biomechanics and plant morphogenesis. In contrast to aerial organs, roots apices must exert a growth pressure to penetrate strong soils and reorient their growth trajectory to cope with obstacles like stones or hardpans or to follow the tortuous paths of the soil porosity. In this review, we present the main macroscopic investigations of soil-root physical interactions in the field and combine them with simple mechanistic modeling derived from model experiments at the scale of the individual root apex.

  11. Dependence of Soil Respiration on Soil Temperature and Soil Moisture in Successional Forests in Southern China

    Institute of Scientific and Technical Information of China (English)

    Xu-Li Tang; Guo-Yi Zhou; Shu-Guang Liu; De-Qiang Zhang; Shi-Zhong Liu; Jiong Li; Cun-Yu Zhou

    2006-01-01

    The spatial and temporal variations in soil respiration and its relationship with biophysical factors in forests near the Tropic of Cancer remain highly uncertain. To contribute towards an improvement of actual estimates, soil respiration rates, soil temperature, and soil moisture were measured in three successional subtropical forests at the Dinghushan Nature Reserve (DNR) in southern China from March 2003 to February 2005. The overall objective of the present study was to analyze the temporal variations of soil respiration and its biophysical dependence in these forests. The relationships between biophysical factors and soil respiration rates were compared in successional forests to test the hypothesis that these forests responded similarly to biophysical factors. The seasonality of soil respiration coincided with the seasonal climate pattern, with high respiration rates in the hot humid season (April-September) and with low rates in the cool dry season (October-March). Soil respiration measured at these forests showed a clear increasing trend with the progressive succession. Annual mean (± SD) soil respiration rate in the DNR forests was (9.0±4.6) Mg CO2-C/hm2 per year, ranging from (6.1±3.2) Mg CO2-C/hm2 per year in early successional forests to (10.7±4.9) Mg CO2-C/hm2 per year in advanced successional forests. Soil respiration was correlated with both soil temperature and moisture. The T/M model, where the two biophysical variables are driving factors, accounted for 74%-82% of soil respiration variation in DNR forests. Temperature sensitivity decreased along progressive succession stages, suggesting that advanced-successional forests have a good ability to adjust to temperature. In contrast, moisture increased with progressive succession processes. This increase is caused, in part, by abundant respirators in advanced-successional forest, where more soil moisture is needed to maintain their activities.

  12. Dependence of soil respiration on soil temperature and soil moisture in successional forests in Southern China

    Science.gov (United States)

    Tang, X.-L.; Zhou, G.-Y.; Liu, S.-G.; Zhang, D.-Q.; Liu, S.-Z.; Li, Ji; Zhou, C.-Y.

    2006-01-01

    The spatial and temporal variations in soil respiration and its relationship with biophysical factors in forests near the Tropic of Cancer remain highly uncertain. To contribute towards an improvement of actual estimates, soil respiration rates, soil temperature, and soil moisture were measured in three successional subtropical forests at the Dinghushan Nature Reserve (DNR) in southern China from March 2003 to February 2005. The overall objective of the present study was to analyze the temporal variations of soil respiration and its biophysical dependence in these forests. The relationships between biophysical factors and soil respiration rates were compared in successional forests to test the hypothesis that these forests responded similarly to biophysical factors. The seasonality of soil respiration coincided with the seasonal climate pattern, with high respiration rates in the hot humid season (April-September) and with low rates in the cool dry season (October-March). Soil respiration measured at these forests showed a clear increasing trend with the progressive succession. Annual mean (±SD) soil respiration rate in the DNR forests was (9.0 ± 4.6) Mg CO2-C/hm2per year, ranging from (6.1 ± 3.2) Mg CO2-C/hm2per year in early successional forests to (10.7 ± 4.9) Mg CO2-C/hm2 per year in advanced successional forests. Soil respiration was correlated with both soil temperature and moisture. The T/M model, where the two biophysical variables are driving factors, accounted for 74%-82% of soil respiration variation in DNR forests. Temperature sensitivity decreased along progressive succession stages, suggesting that advanced-successional forests have a good ability to adjust to temperature. In contrast, moisture increased with progressive succession processes. This increase is caused, in part, by abundant respirators in advanced-successional forest, where more soil moisture is needed to maintain their activities.

  13. Soil Science and Global Issues

    Science.gov (United States)

    Lal, Rattan

    2015-04-01

    Sustainable management of soil is integral to any rational approach to addressing global issues of the 21st century. A high quality soil is essential to: i) advancing food and nutritional security, ii) mitigating and adapting to climate change, iii) improving quality and renewability of water, iv) enriching biodiversity, v) producing biofuel feedstocks for reducing dependence on fossil fuel, and vi) providing cultural, aesthetical and recreational opportunities. Being the essence of all terrestrial life, soil functions and ecosystem services are essential to wellbeing of all species of plants and animals. Yet, soil resources are finite, unequally distributed geographically, and vulnerable to degradation by natural and anthropogenic perturbations. Nonetheless, soil has inherent resilience, and its ecosystem functions and services can be restored over time. However, soil resilience depends on several key soil properties including soil organic carbon (SOC) concentration and pool, plant-available water capacity (PWAC), nutrient reserves, effective rooting depth, texture and clay mineralogy, pH, cation exchange capacity (CEC) etc. There is a close inter-dependence among these properties. For example, SOC concentration strongly affects, PWAC, nutrient reserve, activity and species diversity of soil flora and fauna, CEC etc. Thus, judicious management of SOC concentration to maintain it above the threshold level (~1.5-2%) in the root zone is critical to sustaining essential functions and ecosystem services. Yet, soils of some agroecosystems (e.g., those managed by resources-poor farmers and small landholders in the tropics and sub-tropics) are severely depleted of their SOC reserves. Consequently. Agronomic productivity and wellbeing of people dependent on degraded soils is jeopardized. The ecosystem C pool of the terrestrial biosphere has been mined by extractive practices, the nature demands recarbonization of its biosphere for maintenance of its functions and

  14. 9 Nitrogen Uptake in Soils

    African Journals Online (AJOL)

    User

    + depletion zone and. L. C the mean concentration in solution. D is the soil NH4. + diffusion coefficient, and b is the soil NH. 4. + buffer power. D = DLθ fL / b. (5) where D. L is the NH. 4. + diffusion coefficient in water, θ is the soil water fraction by volume, and fL is the diffusion impedance factor. Kirk & Soliva (1997) assumed ...

  15. Soil classes and acceleration response

    International Nuclear Information System (INIS)

    Kalyoncuoglu, U.Y.

    2007-01-01

    It could not enough for determination of only geotechnical properties (soil classification, soil type, bearing capacity etc.) in order to define assessment of areas being settle in terms of suitability of settlement or how settled area is affected from natural disaster and to get necessary precautions. Damages on the engineering structure in the region posses an earthquake hazard are affected one or more site condition from source point to soil of engineering structure

  16. Soil sampling in emergency situations

    International Nuclear Information System (INIS)

    Carvalho, Zenildo Lara de; Ramos Junior, Anthenor Costa

    1997-01-01

    The soil sampling methods used in Goiania's accident (1987) by the environmental team of Brazilian Nuclear Energy Commission (CNEN) are described. The development of this method of soil sampling to a emergency sampling method used in a Nuclear Emergency Exercise in Angra dos Reis Reactor Site (1991) is presented. A new method for soil sampling based on a Chernobyl environmental monitoring experience (1995) is suggested. (author)

  17. Green ambrosia for Soil- Dry Cow Dung Powder: Rhexistasy to Biostasy

    Science.gov (United States)

    Bagla, Hemlata; Barot, Nisha

    2013-04-01

    "Greener ambrosia for Soil - Dry cow dung powder: Rhexistasy to Biostasy" Pedosphere, the soil with its biotic and abiotic component, is produced by lithosphere`s interactions with atmosphere, hydrosphere and biosphere. The theory of Biorhexistasy proposed by pedologist H. Erhart [1], describes two crucial climatic phases of soil i.e. Biostasy, period of soil formation and Rhexistasy, periods of soil erosion. Humus, the organic matter in soil, permits better aeration, enhances the absorption and releases nutrients, and makes the soil less susceptible to leaching and erosion [2], thus the agent of soil`s vitality. Mismanagement of soil, leads to the degradation of millions of acres of land through erosion, compaction, salinization and acidification. Among these threats salinity is a major abiotic stress reducing the yield of wide variety of crops all over the world [3]. It is been proved that Humic Acid (HA) treatment can ameliorate the deleterious effects of salt stress by increasing root growth, altering mineral uptake, and decreasing membrane damage, thus inducing salt tolerance in plants [4]. HA can be inexpensively incorporated into soils via different biowastes. Dry cow dung powder (DCP), is naturally available bio-organic, complex, polymorphic humified fecal matter, enriched with minerals, carbohydrates, fats, proteins, bile pigments, aliphatic - aromatic species such as HA, Fulvic Acid (FA) etc [5]. The microbial consortium enables DCP with considerable potentials for biodegradation and biotransformation of even saline soil and further contributes to many biogeochemical processes, boosting humus content of soil. Due to unambiguous biological, microbiological as well as chemical inert properties of DCP, it has been successfully utilized as a fertilizer and soil conditioner since ages in India, one of the leading agrarian countries of the world. Thus we summarize that DCP is one of the best contenders for the biostasy and desaliner of soil, aptly, soil`s

  18. In-situ vitrification of soil

    International Nuclear Information System (INIS)

    Buelt, J.L.; Brouns, R.A.; Bonner, W.F.

    1982-01-01

    A method of vitrifying soil at or below a soil surface location. Two or more conductive electrodes are inserted into the soil for heating of the soil mass between them to a temperature above its melting temperature. Materials in the soil, such as buried radioactive waste, can thereby be effectively immobilized. (author)

  19. Do invasive plant species alter soil health?

    Science.gov (United States)

    Invasive species may alter soil characteristics or interact with the soil microbial community to yield a competitive advantage. Our objectives were to determine: if invasive plant species alter soil properties important to soil health; and the long-term effects of invasive plant species on soil pro...

  20. Vital soil; function, value and properties

    NARCIS (Netherlands)

    Doelman, P.; Eijsackers, H.J.P.

    2004-01-01

    Healthy soil, with active soil life, deters long-term soil degradation and ensures that geo-physical processes are undisturbed. Is the vitality of soil under threat due to human civilization? Or is it due to contamination, intensification, and deforestation? Vital Soil aims to look at the effects

  1. Effect of sulfur dioxide on proteins of the vegetable organism

    Energy Technology Data Exchange (ETDEWEB)

    Reckendorfer, P; Beran, F

    1931-01-01

    Experiments were performed to determine the effects of sulfur dioxide on red clover in a controlled environment. An increase in the concentration of sulfur dioxide caused a significant decrease in the digestible protein. However, after the sulfur dioxide was discontinued, there was a decrease in the indigestible protein. The leaves showed an increase in spotting with an increase in sulfur dioxide concentration. Chemical analysis of the soil revealed a higher sulfur content in these experiments.

  2. Effect of soil solarization on soil-borne pathogens

    International Nuclear Information System (INIS)

    Sobh, Hana

    1995-01-01

    Author.Soil solarization was conducted at three locations on the Lebanese coast. Maximum soil temperatures recorded were 53 and 48 celsius degrees at Jiyeh, 48.9, 46 and 43 celsius degrees at Naameh and 48, 45 and 43.5 celsius degrees at Khaldeh at 5, 15 and 25cm soil depths respectively. Mean soil temperatures recorded at 3pm were at Jiyeh 51.6, 47 and 46 celsius degrees compared to Naameh 47, 45 and 41 celsius degrees and Khaldeh 44, 42 and 41 celsius degrees at 5, 15 and 25 cm respectively. The mean temperature in solarized soils were 7.3 to 15 celsius degrees higher than those of the nonsolarized soils indicating a sustained increase of soil temperature in the solarized soils. The effect of soil solarization on artificially introduced fungal pathogens in the soil at Khaldeh, resulted in complete destruction of sclerotia of Sclerotinia spp. at three depths studied. However, with respect to the two other pathogens tested, solarization resulted in reduction of the viability of microsclerotia of Verticillium spp. by 99-79% and of Fusarium oxysporum f. sp. melonis inoculum by 88-54% at 5 and 15 cm respectively, but only by 45% and 14% reduction at 25 cm. This level of control is significant when it is compared to the percentage of control where the level of reduction of inoculum viability did not exceed 10% at any soil depth. As there were contradicting reports in the literature on nematodes, two field trials in greenhouses were conducted to study the possibility of integrating 2 methods for management on nematodes. Soil solarization alone or in combination with biological control of nematodes using Arthrobotrys spp. and Dactyl ella brocophaga to control the root-knot nematodes on two crops, tomato at Naameh and cucumber at Jiyeh were compared to Methyl Bromide treatment. It was evident that, even on a very susceptible crop like cucumber, the integration of biological control and soil solarization gave a good level of control similar to methyl bromide. Neither root

  3. Measuring Soil Moisture in Skeletal Soils Using a COSMOS Rover

    Science.gov (United States)

    Medina, C.; Neely, H.; Desilets, D.; Mohanty, B.; Moore, G. W.

    2017-12-01

    The presence of coarse fragments directly influences the volumetric water content of the soil. Current surface soil moisture sensors often do not account for the presence of coarse fragments, and little research has been done to calibrate these sensors under such conditions. The cosmic-ray soil moisture observation system (COSMOS) rover is a passive, non-invasive surface soil moisture sensor with a footprint greater than 100 m. Despite its potential, the COSMOS rover has yet to be validated in skeletal soils. The goal of this study was to validate measurements of surface soil moisture as taken by a COSMOS rover on a Texas skeletal soil. Data was collected for two soils, a Marfla clay loam and Chinati-Boracho-Berrend association, in West Texas. Three levels of data were collected: 1) COSMOS surveys at three different soil moistures, 2) electrical conductivity surveys within those COSMOS surveys, and 3) ground-truth measurements. Surveys with the COSMOS rover covered an 8000-h area and were taken both after large rain events (>2") and a long dry period. Within the COSMOS surveys, the EM38-MK2 was used to estimate the spatial distribution of coarse fragments in the soil around two COSMOS points. Ground truth measurements included coarse fragment mass and volume, bulk density, and water content at 3 locations within each EM38 survey. Ground-truth measurements were weighted using EM38 data, and COSMOS measurements were validated by their distance from the samples. There was a decrease in water content as the percent volume of coarse fragment increased. COSMOS estimations responded to both changes in coarse fragment percent volume and the ground-truth volumetric water content. Further research will focus on creating digital soil maps using landform data and water content estimations from the COSMOS rover.

  4. Puerto Rico Soil Erodibility (Kffact)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Puerto Rico soil erodibility (Kffactor) - low values indicate low vulnerability to erosion, higher values mean higher susceptibility to runoff.

  5. Micromorphology of pelletized soil conditioners

    Science.gov (United States)

    Hirsch, Florian; Dietrich, Nils; Knoop, Christine; Raab, Thomas

    2017-04-01

    Soil conditioners produced by anaerobic digestion and subsequent composting of organic household waste, bear the potential to improve unproductive farmland together with a reduced input risk of unwanted pollutants into the soils. Within the VeNGA project (http://www.biogas-network.de/venga), soil conditioners from anaerobically digested organic household waste are tested for their potential to increase plant growth in glasshouse and field experiments. Because the production techniques of these soil conditioners may influence their physical and chemical behaviour in the soil, two different techniques for pelletizing the soil conditioners where applied. We present findings from a pot experiment with cereal that has been sampled after two months for micromorphological analyses. We visualize the decomposition and the physical behaviour of the soil conditioners. Pellets produced in an agglomeration mixer result in dense balls, that are only slightly decomposed after the trial. But the soil conditioners created under pressure in a screw extruder are rich in voids and have the potential of retaining more soil water.

  6. Frost Heave in Colloidal Soils

    KAUST Repository

    Peppin, Stephen

    2011-01-01

    We develop a mathematical model of frost heave in colloidal soils. The theory accountsfor heave and consolidation while not requiring a frozen fringe assumption. Two solidificationregimes occur: a compaction regime in which the soil consolidates to accommodate the ice lenses, and a heave regime during which liquid is sucked into the consolidated soil from an external reservoir, and the added volume causes the soil to heave. The ice fraction is found to vary inversely with thefreezing velocity V , while the rate of heave is independent of V , consistent with field and laboratoryobservations. © 2011 Society for Industrial and Applied Mathematics.

  7. Indicators for Monitoring Soil Biodiversity

    DEFF Research Database (Denmark)

    Bispo, A.; Cluzeau, D.; Creamer, R.

    2009-01-01

    is made for a set of suitable indicators for monitoring the decline in soil biodiversity (Bispo et al. 2007). These indicators were selected both from a literature review and an inventory of national monitoring programmes. Decline in soil biodiversity was defined as the reduction of forms of life living...... indicators are actually measured.   For monitoring application it was considered in ENVASSO that only three key indicators per soil stress were practical. For indicating biodiversity decline it was difficult to arrive at a small set of indicators due to the complexity of soil biota and functions. Therefore...

  8. Soil and terrestrial biology studies

    International Nuclear Information System (INIS)

    Anon.

    1976-01-01

    Soil and terrestrial biology studies focused on developing an understanding of the uptake of gaseous substances from the atmosphere by plants, biodegradation of oil, and the movement of Pu in the terrestrial ecosystems of the southeastern United States. Mathematical models were developed for SO 2 and tritium uptake from the atmosphere by plants; the uptake of tritium by soil microorganisms was measured; and the relationships among the Pu content of soil, plants, and animals of the Savannah River Plant area were studied. Preliminary results are reported for studies on the biodegradation of waste oil on soil surfaces

  9. Evaluation of different soil parameters and wild boar (Sus scrofa [L.] grassland damage

    Directory of Open Access Journals (Sweden)

    Žiga Laznik

    2014-10-01

    Full Text Available Presented in this paper are the correlations between different soil parameters [presence of grubs, earthworms, pH, content of P2O5, K2O and organic matter (OM in soil] and wild boar (Sus scrofa [L.] damage to grasslands. The soil samples and damage assessments were performed at six locations in the Kočevje region, which is a densely wooded part of South East Slovenia. A significant positive correlation was discovered between the extent of damage due to wild boar rooting in grasslands and the number of grubs (r=0.73, the weight of grubs (r=0.69 and the content of P2O5 (r=0.87 in the soil. The quantity and weight of grubs in soil were significantly influenced by soil pH, the content of CaCl2 (r=0.71/0.72, P2O5 (r=0.90/0.91, and OM (r=0.74/0.77; while the quantity and weight of earthworms in soil were influenced by the content of K2O (r=0.81/-0.84. A moderate yet insignificant correlation (r=0.48/0.56 was discovered between the number and weight of earthworms in soil and the extent of grassland damage. Grubs represent a more important source of protein for wild boars than earthworms; consequently, reducing the quantity of grubs in soil could minimise the extent of damage caused by boars.

  10. Soil washing and post-wash biological treatment of petroleum hydrocarbon contaminated soils

    OpenAIRE

    Bhandari, Alok

    1992-01-01

    A laboratory scale study was conducted to investigate the treatability of petroleum contaminated soils by soil washing and subsequent biological treatment of the different soil fractions. In addition to soils obtained from contaminated sites, studies were also performed on soils contaminated in the laboratory. Soil washing was performed using a bench-scale soil washing system. Washing was carried out with simultaneous fractionation of the bulk soil into sand, silt and clay fractions. Cl...

  11. Protein docking prediction using predicted protein-protein interface

    Directory of Open Access Journals (Sweden)

    Li Bin

    2012-01-01

    Full Text Available Abstract Background Many important cellular processes are carried out by protein complexes. To provide physical pictures of interacting proteins, many computational protein-protein prediction methods have been developed in the past. However, it is still difficult to identify the correct docking complex structure within top ranks among alternative conformations. Results We present a novel protein docking algorithm that utilizes imperfect protein-protein binding interface prediction for guiding protein docking. Since the accuracy of protein binding site prediction varies depending on cases, the challenge is to develop a method which does not deteriorate but improves docking results by using a binding site prediction which may not be 100% accurate. The algorithm, named PI-LZerD (using Predicted Interface with Local 3D Zernike descriptor-based Docking algorithm, is based on a pair wise protein docking prediction algorithm, LZerD, which we have developed earlier. PI-LZerD starts from performing docking prediction using the provided protein-protein binding interface prediction as constraints, which is followed by the second round of docking with updated docking interface information to further improve docking conformation. Benchmark results on bound and unbound cases show that PI-LZerD consistently improves the docking prediction accuracy as compared with docking without using binding site prediction or using the binding site prediction as post-filtering. Conclusion We have developed PI-LZerD, a pairwise docking algorithm, which uses imperfect protein-protein binding interface prediction to improve docking accuracy. PI-LZerD consistently showed better prediction accuracy over alternative methods in the series of benchmark experiments including docking using actual docking interface site predictions as well as unbound docking cases.

  12. Protein docking prediction using predicted protein-protein interface.

    Science.gov (United States)

    Li, Bin; Kihara, Daisuke

    2012-01-10

    Many important cellular processes are carried out by protein complexes. To provide physical pictures of interacting proteins, many computational protein-protein prediction methods have been developed in the past. However, it is still difficult to identify the correct docking complex structure within top ranks among alternative conformations. We present a novel protein docking algorithm that utilizes imperfect protein-protein binding interface prediction for guiding protein docking. Since the accuracy of protein binding site prediction varies depending on cases, the challenge is to develop a method which does not deteriorate but improves docking results by using a binding site prediction which may not be 100% accurate. The algorithm, named PI-LZerD (using Predicted Interface with Local 3D Zernike descriptor-based Docking algorithm), is based on a pair wise protein docking prediction algorithm, LZerD, which we have developed earlier. PI-LZerD starts from performing docking prediction using the provided protein-protein binding interface prediction as constraints, which is followed by the second round of docking with updated docking interface information to further improve docking conformation. Benchmark results on bound and unbound cases show that PI-LZerD consistently improves the docking prediction accuracy as compared with docking without using binding site prediction or using the binding site prediction as post-filtering. We have developed PI-LZerD, a pairwise docking algorithm, which uses imperfect protein-protein binding interface prediction to improve docking accuracy. PI-LZerD consistently showed better prediction accuracy over alternative methods in the series of benchmark experiments including docking using actual docking interface site predictions as well as unbound docking cases.

  13. Shotgun protein sequencing.

    Energy Technology Data Exchange (ETDEWEB)

    Faulon, Jean-Loup Michel; Heffelfinger, Grant S.

    2009-06-01

    A novel experimental and computational technique based on multiple enzymatic digestion of a protein or protein mixture that reconstructs protein sequences from sequences of overlapping peptides is described in this SAND report. This approach, analogous to shotgun sequencing of DNA, is to be used to sequence alternative spliced proteins, to identify post-translational modifications, and to sequence genetically engineered proteins.

  14. Introduction to protein blotting.

    Science.gov (United States)

    Kurien, Biji T; Scofield, R Hal

    2009-01-01

    Protein blotting is a powerful and important procedure for the immunodetection of proteins following electrophoresis, particularly proteins that are of low abundance. Since the inception of the protocol for protein transfer from an electrophoresed gel to a membrane in 1979, protein blotting has evolved greatly. The scientific community is now confronted with a variety of ways and means to carry out this transfer.

  15. SOIL moisture data intercomparison

    Science.gov (United States)

    Kerr, Yann; Rodriguez-Frenandez, Nemesio; Al-Yaari, Amen; Parens, Marie; Molero, Beatriz; Mahmoodi, Ali; Mialon, Arnaud; Richaume, Philippe; Bindlish, Rajat; Mecklenburg, Susanne; Wigneron, Jean-Pierre

    2016-04-01

    The Soil Moisture and Ocean Salinity satellite (SMOS) was launched in November 2009 and started delivering data in January 2010. Subsequently, the satellite has been in operation for over 6 years while the retrieval algorithms from Level 1 to Level 2 underwent significant evolutions as knowledge improved. Other approaches for retrieval at Level 2 over land were also investigated while Level 3 and 4 were initiated. In this présentation these improvements are assessed by inter-comparisons of the current Level 2 (V620) against the previous version (V551) and new products either using neural networks or Level 3. In addition a global evaluation of different SMOS soil moisture (SM) products is performed comparing products with those of model simulations and other satellites (AMSR E/ AMSR2 and ASCAT). Finally, all products were evaluated against in situ measurements of soil moisture (SM). The study demonstrated that the V620 shows a significant improvement (including those at level1 improving level2)) with respect to the earlier version V551. Results also show that neural network based approaches can yield excellent results over areas where other products are poor. Finally, global comparison indicates that SMOS behaves very well when compared to other sensors/approaches and gives consistent results over all surfaces from very dry (African Sahel, Arizona), to wet (tropical rain forests). RFI (Radio Frequency Interference) is still an issue even though detection has been greatly improved while RFI sources in several areas of the world are significantly reduced. When compared to other satellite products, the analysis shows that SMOS achieves its expected goals and is globally consistent over different eco climate regions from low to high latitudes and throughout the seasons.

  16. Solos urbanos Urban soils

    Directory of Open Access Journals (Sweden)

    Fabrício de Araújo Pedron

    2004-10-01

    Full Text Available A forte pressão provocada pela expansão urbana desordenada sobre os recursos naturais, principalmente os solos, tem provocado danos, muitas vezes de difícil reparo. A grande concentração populacional em centros urbanos cada vez maiores tem dirigido a atenção de diferentes profissionais para o recurso solo, no sentido de entender sua dinâmica para minimizar sua degradação. No entanto, a falta de conhecimento sobre as propriedades, bem como sobre a aptidão dos solos sob uso urbano tem provocado o seu mau uso, resultando em processos como compactação, erosão, deslizamentos e inundações, assim como poluição com substâncias orgânicas, inorgânicas e patógenos, aumentando os custos do desenvolvimento afetando toda a sociedade. Neste sentido, este texto discute como o conhecimento pedológico pode diminuir os efeitos negativos provocados pelo processo de urbanização.The strong pressure caused by the disordered urban expansion over the natural resources, mainly the soils, has caused damages, many times difficult to repair. The great population concentration in urban centers getting larger and larger has been driving the attention of different professionals to soil resource, in the sense of understanding its dynamics to minimize its degradation. The lack of knowledge related to the soils properties and capability promote their inappropriate use, resultig in degrading processes as compaction, erosion, sliding, floods, and organic, inorganic and patogenic pollution, increasing the cost of development and affecting the whole society. This text discusses how pedologic knowledge can reduce the negative effects caused by the urbanization process.

  17. Estimation of soil-soil solution distribution coefficient of radiostrontium using soil properties.

    Science.gov (United States)

    Ishikawa, Nao K; Uchida, Shigeo; Tagami, Keiko

    2009-02-01

    We propose a new approach for estimation of soil-soil solution distribution coefficient (K(d)) of radiostrontium using some selected soil properties. We used 142 Japanese agricultural soil samples (35 Andosol, 25 Cambisol, 77 Fluvisol, and 5 others) for which Sr-K(d) values had been determined by a batch sorption test and listed in our database. Spearman's rank correlation test was carried out to investigate correlations between Sr-K(d) values and soil properties. Electrical conductivity and water soluble Ca had good correlations with Sr-K(d) values for all soil groups. Then, we found a high correlation between the ratio of exchangeable Ca to Ca concentration in water soluble fraction and Sr-K(d) values with correlation coefficient R=0.72. This pointed us toward a relatively easy way to estimate Sr-K(d) values.

  18. Soil monitoring instrumentation

    International Nuclear Information System (INIS)

    Umbarger, C.J.

    1981-01-01

    The Los Alamos Scientific Laboratory (LASL) has an extensive program for the development of nondestructive assay instrumentation for the quantitative analysis of transuranic (TRU) materials found in bulk solid wastes generated by Department of Energy facilities and by the commercial nuclear power industry. Included are wastes generated in decontamination and decommissioning of outdated nuclear facilities, as well as from old waste-burial-ground exhumation programs. The assay instrumentation is designed to have detection limits below 10 nCi/g wherever practicable. The assay instrumentation that is applied specifically to soil monitoring is discussed

  19. In situ phytoremediation of a soil historically contaminated by metals, hydrocarbons and polychlorobiphenyls.

    Science.gov (United States)

    Doni, S; Macci, C; Peruzzi, E; Arenella, M; Ceccanti, B; Masciandaro, G

    2012-05-01

    In the past several years, industrial and agricultural activities have led to serious environmental pollution, resulting in a large number of contaminated sites. As a result, much recent research activity has focused on the application of bioremediation technologies as an environmentally friendly and economically feasible means for decontamination of polluted soil. In this study horse manure and Populus nigra (var. italica) (HM + P treatment) have been used, at real scale level, as an approach for bioremediation of a soil historically contaminated by metals (Pb, Cr, Cd, Zn, Cu and Ni) and organic contaminants, such as polychlorobiphenyls and petroleum hydrocarbon. After one year, the HM + P phytotreatment was effective in the reclamation of the polluted soil from both organic and inorganic contaminants. A reduction of about 80% in total petroleum hydrocarbon (TPH), and 60% in polychlorobiphenyls (PCBs) and total metals was observed in the HM + P treatment. In contrast, in the horse manure (HM) treatment, used as control, a reduction of only about 30% of TPH was obtained. In order to assess both effectiveness and evolution of the remediation system to a biologically active soil ecosystem, together with the pollution parameters, the parameters describing the evolution of the soil functionality (enzymatic activities and protein SDS-PAGE pattern) were investigated. A stimulation of the metabolic soil processes (increase in dehydrogenase activity) was observed in the HM + P compared to the HM treatment. Finally, preliminary protein SDS-PAGE results have permitted the identification of proteins that have been recovered in the HM + P soil with respect to the HM; this may become a basic tool for improving the biogeochemical status of soil during the decontamination through the identification of microbial populations that are active in soil decontamination.

  20. Our interests in protein-protein interactions

    Indian Academy of Sciences (India)

    protein interactions. Evolution of P-P partnerships. Evolution of P-P structures. Evolutionary dynamics of P-P interactions. Dynamics of P-P interaction network. Host-pathogen interactions. CryoEM mapping of gigantic protein assemblies.

  1. Changes in photosynthesis and soil moisture drive the seasonal soil respiration-temperature hysteresis relationship

    Science.gov (United States)

    In nearly all large-scale models, CO2 efflux from soil (i.e., soil respiration) is represented as a function of soil temperature. However, the relationship between soil respiration and soil temperature is highly variable at the local scale, and there is often a pronounced hysteresis in the soil resp...

  2. Reduction of soil tare by improved uprooting of sugar beet : a soil dynamic approach

    NARCIS (Netherlands)

    Vermeulen, G.D.

    2001-01-01

    The relative amount of soil in sugar beet lots, called soil tare, should be reduced to curtail the cost and negative aspects of soil tare. Highest soil tare occurs in beet lots harvested out of wet clay soil. The main problem is that commonly-used share lifters press the soil against the

  3. Soil Organic Matter and Soil Productivity: Searching for the Missing Link

    Science.gov (United States)

    Felipe G. Sanchez

    1998-01-01

    Soil-organic matter (SOM) is a complex array of components including soil fauna and flora at different stages of decomposition (Berg et al., 1982). Its concentration in soils can vary from 0.5% in mineral soils to almost 100% in peat soils (Brady, 1974). Organic matter (OM) in the surface mineral soil is considered a major determinant of forest ecosystem productivity...

  4. New perspectives on the soil erosion-soil quality relationship

    International Nuclear Information System (INIS)

    Pennock, D.J.

    1998-01-01

    The redistribution of soil has a profound impact on its quality (defined as its ability to function within its ecosystem and within adjacent ecosystems) and ultimately on its productivity for crop growth. The application of 137 Cs-redistribution techniques to the study of erosion has yielded major new insights into the soil erosion-soil quality relationship. In highly mechanized agricultural systems, tillage erosion can be the dominant cause of soil redistribution; in other agroecosystems, wind and water erosion dominate. Each causal factor results in characteristic landscape-scale patterns of redistribution. In landscapes dominated by tillage redistribution, highest losses occur in shoulder positions (those with convex downslope curvatures); in water-erosion-dominated landscapes, highest losses occur where slope gradient and length are at a maximum. Major impacts occur through the loss of organically-enriched surface material and through the incorporation of possibly yield-limiting subsoils into the rooting zone of the soil column. The potential impact of surface soil losses and concomitant subsoil incorporation on productivity may be assessed by examining the pedological nature of the affected soils and their position in the landscape. The development of sound conservation policies requires that the soil erosion-quality relationship be rigorously examined in the full range of pedogenic environments, and future applications of the 137 Cs technique hold considerable promise for providing this comprehensive global database. (author)

  5. Soil loss prediction using universal soil loss equation (USLE ...

    African Journals Online (AJOL)

    Soil loss prediction using universal soil loss equation (USLE) simulation model in a mountainous area in Ag lasun district, Turkey. ... The need for sufficient knowledge and data for decision makers is obvious hence the present study was carried out. The study area, the Alasun district, is in the middle west of Turkey and is ...

  6. NATURAL ATTENUATION OF COPPER IN SOILS AND SOIL MINERALS - II

    Science.gov (United States)

    The bioabailability and toxicity of Cu in soils is controlled by a number of soil properties and processes. Some of these such as pH, adsorption/desorption and competition with beneficial cations have been extensively studied. However, the effects of natural attenuation (or aging...

  7. The effect of soil fauna on carbon sequestration in soil

    Czech Academy of Sciences Publication Activity Database

    Frouz, Jan; Pižl, Václav; Kaneda, Satoshi; Šimek, Miloslav

    2008-01-01

    Roč. 10, - (2008) ISSN 1029-7006. [EGU General Assembly 2008. 13.04.2008-18.04.2008, Vienna] Institutional research plan: CEZ:AV0Z60660521 Keywords : soil fauna * carbon sequestration * soil Subject RIV: EH - Ecology, Behaviour

  8. Hydrolysis of nitriles by soil bacteria: variation with soil origin

    CSIR Research Space (South Africa)

    Rapheeha, OKL

    2017-03-01

    Full Text Available . To achieve this, we needed to compare the efficiency of isolation methods and determine the influence of land use and geographical origin of the soil sample. Nitrile-utilizing bacteria were isolated from various soil environments across a 1000 km long...

  9. Effects of soil and water conservation practices on selected soil ...

    African Journals Online (AJOL)

    Although different types of soil and water conservation practices (SWCPs) were introduced, the sustainable use of these practices is far below expectations, and soil erosion continues to be a severe problem in Ethiopia. Therefore, this study was conducted at Debre Yakobe Micro-Watershed (DYMW), Northwest Ethiopia ...

  10. Increasing cotton stand establishment in soils prone to soil crusting

    Science.gov (United States)

    Many factors can contribute to poor cotton stand establishment, and cotton is notorious for its weak seedling vigor. Soil crusting can be a major factor hindering cotton seedling emergence in many of the cotton production regions of the US and the world. Crusting is mainly an issue in silty soils ...

  11. Inference of soil hydrologic parameters from electronic soil moisture records

    Science.gov (United States)

    Soil moisture is an important control on hydrologic function, as it governs vertical fluxes from and to the atmosphere, groundwater recharge, and lateral fluxes through the soil. Historically, the traditional model parameters of saturation, field capacity, and permanent wilting point have been deter...

  12. Influence of amendments on soil structure and soil loss under ...

    African Journals Online (AJOL)

    Macromolecule polymers are significant types of chemical amendments because of their special structure, useful functions and low cost. Macromolecule polymers as soil amendment provide new territory for studying China's agricultural practices and for soil and water conservation, because polymers have the ability to ...

  13. Soil water balance scenario studies using predicted soil hydraulic parameters

    NARCIS (Netherlands)

    Nemes, A.; Wösten, J.H.M.; Bouma, J.; Várallyay, G.

    2006-01-01

    Pedotransfer functions (PTFs) have become a topic drawing increasing interest within the field of soil and environmental research because they can provide important soil physical data at relatively low cost. Few studies, however, explore which contributions PTFs can make to land-use planning, in

  14. Effects of soil surface management practices on soil and tree ...

    African Journals Online (AJOL)

    Effects on soil, leaf and fruit element concentrations of organic (compost, straw mulch and hand weeding) and integrated (inorganic fertilisers and herbicide usage; IP) soil surface management practices in the tree rows, in combination with weed covers, cover crops and straw mulch in the work rows, were investigated in a ...

  15. Soil forensics: How far can soil clay analysis distinguish between soil vestiges?

    Science.gov (United States)

    Corrêa, R S; Melo, V F; Abreu, G G F; Sousa, M H; Chaker, J A; Gomes, J A

    2018-03-01

    Soil traces are useful as forensic evidences because they frequently adhere to individuals and objects associated with crimes and can place or discard a suspect at/from a crime scene. Soil is a mixture of organic and inorganic components and among them soil clay contains signatures that make it reliable as forensic evidence. In this study, we hypothesized that soils can be forensically distinguished through the analysis of their clay fraction alone, and that samples of the same soil type can be consistently distinguished according to the distance they were collected from each other. To test these hypotheses 16 Oxisol samples were collected at distances of between 2m and 1.000m, and 16 Inceptisol samples were collected at distances of between 2m and 300m from each other. Clay fractions were extracted from soil samples and analyzed for hyperspectral color reflectance (HSI), X-ray diffraction crystallographic (XRD), and for contents of iron oxides, kaolinite and gibbsite. The dataset was submitted to multivariate analysis and results were from 65% to 100% effective to distinguish between samples from the two soil types. Both soil types could be consistently distinguished for forensic purposes according to the distance that samples were collected from each other: 1000m for Oxisol and 10m for Inceptisol. Clay color and XRD analysis were the most effective techniques to distinguish clay samples, and Inceptisol samples were more easily distinguished than Oxisol samples. Soil forensics seems a promising field for soil scientists as soil clay can be useful as forensic evidence by using routine analytical techniques from soil science. Copyright © 2017 The Chartered Society of Forensic Sciences. Published by Elsevier B.V. All rights reserved.

  16. Underestimation of boreal soil carbon stocks by mathematical soil carbon models linked to soil nutrient status

    Science.gov (United States)

    Ťupek, Boris; Ortiz, Carina A.; Hashimoto, Shoji; Stendahl, Johan; Dahlgren, Jonas; Karltun, Erik; Lehtonen, Aleksi

    2016-08-01

    Inaccurate estimate of the largest terrestrial carbon pool, soil organic carbon (SOC) stock, is the major source of uncertainty in simulating feedback of climate warming on ecosystem-atmosphere carbon dioxide exchange by process-based ecosystem and soil carbon models. Although the models need to simplify complex environmental processes of soil carbon sequestration, in a large mosaic of environments a missing key driver could lead to a modeling bias in predictions of SOC stock change.We aimed to evaluate SOC stock estimates of process-based models (Yasso07, Q, and CENTURY soil sub-model v4) against a massive Swedish forest soil inventory data set (3230 samples) organized by a recursive partitioning method into distinct soil groups with underlying SOC stock development linked to physicochemical conditions.For two-thirds of measurements all models predicted accurate SOC stock levels regardless of the detail of input data, e.g., whether they ignored or included soil properties. However, in fertile sites with high N deposition, high cation exchange capacity, or moderately increased soil water content, Yasso07 and Q models underestimated SOC stocks. In comparison to Yasso07 and Q, accounting for the site-specific soil characteristics (e. g. clay content and topsoil mineral N) by CENTURY improved SOC stock estimates for sites with high clay content, but not for sites with high N deposition.Our analysis suggested that the soils with poorly predicted SOC stocks, as characterized by the high nutrient status and well-sorted parent material, indeed have had other predominant drivers of SOC stabilization lacking in the models, presumably the mycorrhizal organic uptake and organo-mineral stabilization processes. Our results imply that the role of soil nutrient status as regulator of organic matter mineralization has to be re-evaluated, since correct SOC stocks are decisive for predicting future SOC change and soil CO2 efflux.

  17. Effects of Soil Quality Enhancement on Pollinator-Plant Interactions

    Directory of Open Access Journals (Sweden)

    Yasmin J. Cardoza

    2012-01-01

    Full Text Available Both biotic and abiotic factors can affect soil quality, which can significantly impact plant growth, productivity, and resistance to pests. However, the effects of soil quality on the interactions of plants with beneficial arthropods, such as pollinators, have not been extensively examined. We studied the effects of vermicompost (earthworm compost, VC soil amendment on behavioral and physiological responses of pollinators to flowers and floral resources, using cucumbers, Cucumis sativus, as our model system. Results from experiments conducted over three field seasons demonstrated that, in at least two out of three years, VC amendment significantly increased visit length, while reducing the time to first discovery. Bumblebee (Bombus impatiens workers that fed on flowers from VC-amended plants had significantly larger and more active ovaries, a measure of nutritional quality. Pollen fractions of flowers from VC-grown plants had higher protein compared to those of plants grown in chemically fertilized potting soil. Nectar sugar content also tended to be higher in flowers from VC-grown plants, but differences were not statistically significant. In conclusion, soil quality enhancement, as achieved with VC amendment in this study, can significantly affect plant-pollinator interactions and directly influences pollinator nutrition and overall performance.

  18. Evolution of protein-protein interactions

    Indian Academy of Sciences (India)

    Evolution of protein-protein interactions · Our interests in protein-protein interactions · Slide 3 · Slide 4 · Slide 5 · Slide 6 · Slide 7 · Slide 8 · Slide 9 · Slide 10 · Slide 11 · Slide 12 · Slide 13 · Slide 14 · Slide 15 · Slide 16 · Slide 17 · Slide 18 · Slide 19 · Slide 20.

  19. Spectral Assessment of Soil Properties: Standoff Quantification of Soil Organic Matter Content in Surface Mineral Soils and Alaskan Peat

    Science.gov (United States)

    2017-08-01

    Soil Properties Standoff Quantification of Soil Organic Matter Content in Surface Mineral Soils and Alaskan Peat En gi ne er R es ea rc h an d D...ERDC 6.2 GRE ARTEMIS STO-R DRTSPORE ERDC TR-17-9 August 2017 Spectral Assessment of Soil Properties Standoff Quantification of Soil Organic...Matter Content in Surface Mineral Soils and Alaskan Peat Stacey L. Jarvis, Karen L. Foley, Robert M. Jones, Stephen D. Newman, and Robyn A. Barbato

  20. [Immunochemical Detection of Azospirilla in Soil with Genus-Specific Antibodies].

    Science.gov (United States)

    Shirokov, A A; Krasov, A I; Selivanov, N Yu; Burygin, G L; Shchegolev, S Yu; Matora, L Yu

    2015-01-01

    Immunoelectrophoresis and immunodiffusion analysis with antibodies to whole intact cells of the type strain of nitrogen-fixing soil bacteria Azospirillum brasilense Sp7 revealed at least three conservative surface immunogenic proteins of azospirilla. Cross-reactions with these proteins made it possible to use the above antibodies for detection of azospirilla as a genus-specific probe conjugated with horseradish peroxidase as an enzymatic label. Direct immune-enzyme analysis of soil suspensions (typical chernozem, Saratov oblast) confirmed applicability of the conjugates based on genus-specific antibodies to the surface proteins of azospirilla for direct detection of this bacterial genus in environmental samples. These results provide a basis for broad application of this method for analysis of Azospirillum occurrence in soil.

  1. Saline soil properties, quality and productivity of wheat grown with bagasse ash and thiourea in different climatic zones.

    Science.gov (United States)

    Seleiman, Mahmoud F; Kheir, Ahmed M S

    2018-02-01

    Soil salinity and atmosphere temperature change have negative impacts on crop productivity and its quality and can pose a significant risk to soil properties in semi-arid regions. We conducted two field experiments in North (first zone) and South (second zone) of Egypt to investigate the effects of soil bagasse ash (10 ton ha -1 ), foliar thiourea (240 g ha -1 ) and their combination in comparison to the control treatment on saline soil properties and productivity and quality traits of wheat. All studied treatments were received the recommended rate of N, P and K fertilizations. Combination of soil bagasse ash and foliar thiourea application resulted in a significant improvement of most studied soil properties (i.e. EC, compaction, hydraulic conductivity, OM and available P, K, N contents) after harvest in comparison to other treatments in both of zones. Also, it enhanced growth and grain yield of wheat in terms of photosynthesis related attributes and yield components. Moreover, combination of soil bagasse ash and foliar thiourea application resulted in superior grain quality traits in terms of carbohydrate, fibre, protein and ash contents than separated application of soil bagasse ash, foliar thiourea or even control treatment. In conclusion, combination of soil bagasse ash and foliar thiourea application can be used as suitable option to enhance plant nutrition, wheat productivity and improve wheat grain quality and soil traits in saline soil as well as can alleviate heat stress. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. Anthropogenic effects on soil micromycetes

    Directory of Open Access Journals (Sweden)

    Đukić Dragutin A.

    2007-01-01

    Full Text Available This paper is a synthesis of long-term investigations based on the effect of different authropogenic pollutants (mineral and organic fertilizers, heavy metals, contaminated irrigation water, nitrification inhibitor and detergents on the dynamics of soil fungi number. The investigations were performed at the Microbiology Department and trial fields of the Faculty of Agronomy in Čačak on smonitza and alluvium soils in field and under greenhouse conditions. Maize, wheat, barley and red clover were used as test plants in these studies. The quantitative composition of the fungi in the soils investigated was determined by the Čapek selective agar dilution method. The study results show that the number of soil fungi was dependent on the type and rate of agrochemicals used, on the growing season, and the soil zone the samples were taken from for the analysis. Lower nitrogen fertiliser rates (80 and 120 kg x ha-1 and organic fertilizers stimulated the development of soil fungi, unlike the rate of 150 kg x ha-1. Heavy metals, mercury and cadmium in particular, as well as high rates of the N-serve nitrification inhibitor, inhibited the development of this group of soil microorganisms. Generally, the adverse effect of contaminated irrigation water on the soil fungi was recorded in both soil types, and particularly in the smonitza under red clover. Low detergent (Meril concentrations did not have any significant effect on this group of microorganisms. In this respect, it can be concluded that the soil fungi number dynamics can be used in monitoring soils polluted by different toxinogenic substances.

  3. Soil sampling for environmental contaminants

    International Nuclear Information System (INIS)

    2004-10-01

    The Consultants Meeting on Sampling Strategies, Sampling and Storage of Soil for Environmental Monitoring of Contaminants was organized by the International Atomic Energy Agency to evaluate methods for soil sampling in radionuclide monitoring and heavy metal surveys for identification of punctual contamination (hot particles) in large area surveys and screening experiments. A group of experts was invited by the IAEA to discuss and recommend methods for representative soil sampling for different kinds of environmental issues. The ultimate sinks for all kinds of contaminants dispersed within the natural environment through human activities are sediment and soil. Soil is a particularly difficult matrix for environmental pollution studies as it is generally composed of a multitude of geological and biological materials resulting from weathering and degradation, including particles of different sizes with varying surface and chemical properties. There are so many different soil types categorized according to their content of biological matter, from sandy soils to loam and peat soils, which make analytical characterization even more complicated. Soil sampling for environmental monitoring of pollutants, therefore, is still a matter of debate in the community of soil, environmental and analytical sciences. The scope of the consultants meeting included evaluating existing techniques with regard to their practicability, reliability and applicability to different purposes, developing strategies of representative soil sampling for cases not yet considered by current techniques and recommending validated techniques applicable to laboratories in developing Member States. This TECDOC includes a critical survey of existing approaches and their feasibility to be applied in developing countries. The report is valuable for radioanalytical laboratories in Member States. It would assist them in quality control and accreditation process

  4. ANTHROPOGENIC EFFECTS ON SOIL MICROMYCETES

    Directory of Open Access Journals (Sweden)

    Dragutin A. Đukić

    2007-09-01

    Full Text Available This paper is a synthesis of long-term investigations based on the effect of different (mineral and organic fertilisers, heavy metals, contaminated irrigation water, nitrification inhibitor and detergents on the dynamics of soil fungi number. The investigations were performed at the Microbiology Department and trial fields of the Faculty of Agronomy in Cacak on smonitza and alluvium soils in field and greenhouse conditions. Maize, wheat, barley and red clover were used as test plants in these studies. The quantitative composition of the fungi in the soils investigated was determined by the Czapek selective agar dilution method. The study results show that the number of soil fungi was dependent on the type and rate of agrochemicals used, on the growing season and the soil zone the samples were taken from for the analysis. Lower nitrogen fertiliser rates (80 and 120 kg?ha-1 and organic fertilisers stimulated the development of soil fungi, unlike the rate of 150 kg?ha- 1. Heavy metals, mercury and cadmium in particular, as well as high rates of the N-serve nitrification inhibitor inhibited the development of this group of soil microorganisms. Generally, the adverse effect of contaminated irrigation water on the soil fungi was recorded in both soil types, and particularly in the smonitza under red clover. Low detergent (Meril concentrations did not have any significant effect on this group of microorganisms. In this respect, it can be concluded that the soil fungi number dynamics can be used in monitoring soils polluted by different toxinogenic substances.

  5. Soil fungi as indicators of pesticide soil pollution

    Directory of Open Access Journals (Sweden)

    Mandić Leka

    2005-01-01

    Full Text Available Soil fungi, with their pronounced enzymic activity and high osmotic potential, represent a significant indicator of negative effects of different pesticides on the agroecosystem as a whole. In that respect, a trial was set up on the alluvium soil type with the aim to investigate the effect of different herbicides (Simazine, Napropamid, Paraquat, fungicides (Captan and Mancozeb and insecticides (Fenitrothion and Dimethoate on a number of soil fungi under apple trees. The number of soil fungi was determined during four growing seasons by an indirect method of dilution addition on the Czapek agar. The study results indicate that the fungi belong to the group of microorganisms that, after an initial sensible response to the presence of pesticides in the soil, very rapidly establish normal metabolism enabling them even to increase their number. The fungicides and insecticides applied were found to be particularly effective in that respect.

  6. Soil properties related to 60Co bioavailability in tropical soils

    International Nuclear Information System (INIS)

    Bartoly, Flavia; Wasserman, Maria Angelica; Rochedo, Elaine Ruas Rodriguez; Viana, Aline Gonzalez; Souza, Rodrigo Camara; Oliveira, Giselle Rodrigues; Reis, Wagner Goncalves Soares; Perez, Daniel Vidal

    2005-01-01

    This work presents the results of field experiments to obtain soil to plants Transfer factor (TF) for 60 Co in reference plants cultivated in Ferralsol, Acrisol and Nitisol. These soils represent the majority of Brazilian agricultural area. Values of TF varied from 0.001 to 0.05 for corn and from 0.001 to 0.81 for cabbage. Results of 60 Co TF were discussed in relation to the physical and chemical properties of the soils and 60 Co geochemical partition. The sequential chemical extraction showed that more than 40% of the 60 Co present in the soils are associated to manganese oxides. These results will provide regional values for parameters used in the environmental radiological modeling aiming to optimize the planning of emergency interventions or the waste management related to tropical soils. (author)

  7. Assessing the toxicity of herbicide isoproturon on Aporrectodea caliginosa (Oligochaeta) and its fate in soil ecosystem.

    Science.gov (United States)

    Mosleh, Yahia Youssef Ismail

    2009-08-01

    This study was conducted to determine the residues of isoproturon and its metabolites, 1-(4-isopropylphenyl)-3-methylurea, 1-(4-isopropylphenyl) urea, and 4-isopropylanilin in soil and mature earthworms under laboratory conditions. Mature earthworms (Aporrectodea caliginosa) were exposed for various durations (7, 15, 30, and 60 days) to soils contaminated with isoproturon concentrations (2, 4, 6, 8, and 10 mg kg(-1) soil). The decrease in isoproturon concentration in the soil was inversely correlated to it's initial concentration. The highest concentration detected for isoproturon in earthworms was observed during the first 15 days and decreased thereafter. Acute toxicity of isoproturon was investigated; total soluble protein content and glycogen of the worms were evaluated. Levels of these parameters were related to isoproturon concentration in soil and earthworms. No lethal effect of isoproturon was observed even at the concentration of 1200 mg kg(-1) soil after 60 days of exposure. A reduction of total soluble protein was observed in all treated worms (maximum 59.54%). This study suggests the use of the total soluble protein content and glycogen of earthworms as biomarkers of exposure to isoproturon. 2008 Wiley Periodicals, Inc.

  8. Continuous soil monitoring and inventory of soils as part of the soil information system

    International Nuclear Information System (INIS)

    Schilling, B.

    1993-01-01

    The Bavarian Geological State office conducted a soil inventory and continuous soil monitoring programme. In order to make permanent monitoring feasible the Bavarian Geological State office developed a special concept. This concept of site selection, commissioning, sampling and analysis is described in this paper. The results of first studies of the three permanent soil monitoring areas in the Alpine region shows that only on the Gotzenalm in the national park in Berchtegaden there are significant accumulations of Cs-137 and of some other typically anthropogenic heavy metals in the top soil. Organic pollution is small in all three areas. (orig./EW) [de

  9. Evaluation of soil structure in the framework of an overall soil quality rating

    DEFF Research Database (Denmark)

    Mueller, L; Shepherd, T G; Schindler, U

    2013-01-01

    Soil structure is an important aspect of agricultural soil quality, and its preservation and improvement are key to sustaining soil functions. Methods of overall soil quality assessment which include visual soil structure information can be useful tools for monitoring and managing the global soil...... resource. The aim of the paper is: (i) to demonstrate the role of visual quantification of soil structure within the procedure of the overall soil quality assessment by the Muencheberg Soil Quality Rating (M-SQR), (ii) to quantify the magnitude and variability of soil structure and overall M......-SQR on a number of agricultural research sites and (iii) to analyse the correlations of soil quality rating results with crop yields. We analysed visual soil structure and overall soil quality on a range of 20 experimental sites in seven countries. To assess visual soil structure we utilised the Visual Soil...

  10. [Soil Microbial Respiration Under Different Soil Temperature Conditions and Its Relationship to Soil Dissolved Organic Carbon and Invertase].

    Science.gov (United States)

    Wu, Jing; Chen, Shu-tao; Hu, Zheng-hua; Zhang, Xu

    2015-04-01

    In order to investigate the soil microbial respiration under different temperature conditions and its relationship to soil dissolved organic carbon ( DOC) and invertase, an indoor incubation experiment was performed. The soil samples used for the experiment were taken from Laoshan, Zijinshan, and Baohuashan. The responses of soil microbial respiration to the increasing temperature were studied. The soil DOC content and invertase activity were also measured at the end of incubation. Results showed that relationships between cumulative microbial respiration of different soils and soil temperature could be explained by exponential functions, which had P values lower than 0.001. The coefficient of temperature sensitivity (Q10 value) varied from 1.762 to 1.895. The Q10 value of cumulative microbial respiration decreased with the increase of soil temperature for all soils. The Q10 value of microbial respiration on 27 days after incubation was close to that of 1 day after incubation, indicating that the temperature sensitivity of recalcitrant organic carbon may be similar to that of labile organic carbon. For all soils, a highly significant ( P = 0.003 ) linear relationship between cumulative soil microbial respiration and soil DOC content could be observed. Soil DOC content could explain 31.6% variances of cumulative soil microbial respiration. For the individual soil and all soils, the relationship between cumulative soil microbial respiration and invertase activity could be explained by a highly significant (P soil microbial respiration.

  11. Protein in diet

    Science.gov (United States)

    Diet - protein ... Protein foods are broken down into parts called amino acids during digestion. The human body needs a ... to eat animal products to get all the protein you need in your diet. Amino acids are ...

  12. Protein-losing enteropathy

    Science.gov (United States)

    ... this page: //medlineplus.gov/ency/article/007338.htm Protein-losing enteropathy To use the sharing features on this page, please enable JavaScript. Protein-losing enteropathy is an abnormal loss of protein ...

  13. VT Data - NRCS Soil Survey Units

    Data.gov (United States)

    Vermont Center for Geographic Information — (Link to Metadata) This data set is a digital soil survey and generally is the most detailed level of soil geographic data developed by the National Cooperative Soil...

  14. VT Data - Agriculturally Important Soil Units

    Data.gov (United States)

    Vermont Center for Geographic Information — (Link to Metadata) GeologicSoils_SOAG includes a pre-selected subset of SSURGO soil data depicting prime agricultural soils in Vermont. The SSURGO county coverages...

  15. Quick test for infiltration of arable soils

    OpenAIRE

    Liebl, Boris; Spiegel, Ann-Kathrin

    2018-01-01

    The quick test makes the consequences of soil compaction on water infiltration and the yield of agricultural crops visible. It promotes an understanding of the effects of soil compaction and the importance of soil-conserving cultivation.

  16. Relating soil biochemistry to sustainable crop production

    Science.gov (United States)

    Amino acids, amino sugars, carbohydrates, phenols, and fatty acids together comprise appreciable proportions of soil organic matter (SOM). Their cycling contribute to soil processes, including nitrogen availability, carbon sequestration and aggregation. For example, soil accumulation of phenols has ...

  17. Soil conservation: Market failure and program performance

    OpenAIRE

    Paul Gary Wyckoff

    1983-01-01

    An examination of the economic rationale behind soil conservation programs, an assessment of the magnitude of the soil erosion problem, and an evaluation of the effectiveness of U.S. soil conservation policies.

  18. Use of soil stabilizers on highway shoulders.

    Science.gov (United States)

    2005-01-01

    This study evaluated soil additives as stabilizers for aggregate and topsoil shoulders. Its purpose was to determine (1) the effect soil stabilizers have on the strength and stability of soil shoulders, and (2) the costs and benefits of using stabili...

  19. Soil management practices for sustainable crop production

    International Nuclear Information System (INIS)

    Abalos, E.B.

    2005-01-01

    In a sustainable system, the soil is viewed as a fragile and living medium that must be protected and nurtured to ensure its long-term productivity and stability. However, due to high demand for food brought about by high population as well as the decline in agricultural lands, the soil is being exploited beyond its limit thus, leading to poor or sick soils. Sound soil management practices in the Philippines is being reviewed. The technologies, including the advantages and disadvantages are hereby presented. This includes proper cropping systems, fertilizer program, soil erosion control and correcting soil acidity. Sound soil management practices which conserve organic matter for long-term sustainability includes addition of compost, maintaining soil cover, increasing aggregates stability, soil tilt and diversity of soil microbial life. A healthy soil is a key component to sustainability as a health soil produce healthy crop plants and have optimum vigor or less susceptible to pests. (author)

  20. Soil invertebrate fauna affect N2 O emissions from soil.

    Science.gov (United States)

    Kuiper, Imke; de Deyn, Gerlinde B; Thakur, Madhav P; van Groenigen, Jan Willem

    2013-09-01

    Nitrous oxide (N2 O) emissions from soils contribute significantly to global warming. Mitigation of N2 O emissions is severely hampered by a lack of understanding of its main controls. Fluxes can only partly be predicted from soil abiotic factors and microbial analyses - a possible role for soil fauna has until now largely been overlooked. We studied the effect of six groups of soil invertebrate fauna and tested the hypothesis that all of them increase N2 O emissions, although to different extents. We conducted three microcosm experiments with sandy soil and hay residue. Faunal groups included in our experiments were as follows: fungal-feeding nematodes, mites, springtails, potworms, earthworms and isopods. In experiment I, involving all six faunal groups, N2 O emissions declined with earthworms and potworms from 78.4 (control) to 37.0 (earthworms) or 53.5 (potworms) mg N2 O-N m(-2) . In experiment II, with a higher soil-to-hay ratio and mites, springtails and potworms as faunal treatments, N2 O emissions increased with potworms from 51.9 (control) to 123.5 mg N2 O-N m(-2) . Experiment III studied the effect of potworm density; we found that higher densities of potworms accelerated the peak of the N2 O emissions by 5 days (P soil aeration by the soil fauna reduced N2 O emissions in experiment I, whereas in experiment II N2 O emissions were driven by increased nitrogen and carbon availability. In experiment III, higher densities of potworms accelerated nitrogen and carbon availability and N2 O emissions, but did not increase them. Overall, our data show that soil fauna can suppress, increase, delay or accelerate N2 O emissions from soil and should therefore be an integral part of future N2 O studies. © 2013 John Wiley & Sons Ltd.

  1. Degradation kinetics of ptaquiloside in soil and soil solution.

    Science.gov (United States)

    Ovesen, Rikke Gleerup; Rasmussen, Lars Holm; Hansen, Hans Christian Bruun

    2008-02-01

    Ptaquiloside (PTA) is a carcinogenic norsesquiterpene glycoside produced in bracken (Pteridium aquilinum (L.) Kuhn), a widespread, aggressive weed. Transfer of PTA to soil and soil solution eventually may contaminate groundwater and surface water. Degradation rates of PTA were quantified in soil and soil solutions in sandy and clayey soils subjected to high natural PTA loads from bracken stands. Degradation kinetics in moist soil could be fitted with the sum of a fast and a slow first-order reaction; the fast reaction contributed 20 to 50% of the total degradation of PTA. The fast reaction was similar in all horizons, with the rate constant k(1F) ranging between 0.23 and 1.5/h. The slow degradation, with the rate constant k(1S) ranging between 0.00067 and 0.029/ h, was more than twice as fast in topsoils compared to subsoils, which is attributable to higher microbial activity in topsoils. Experiments with sterile controls confirmed that nonmicrobial degradation processes constituted more than 90% of the fast degradation and 50% of the slow degradation. The lower nonmicrobial degradation rate observed in the clayey compared with the sandy soil is attributed to a stabilizing effect of PTA by clay silicates. Ptaquiloside appeared to be stable in all soil solutions, in which no degradation was observed within a period of 28 d, in strong contrast to previous studies of hydrolysis rates in artificial aqueous electrolytes. The present study predicts that the risk of PTA leaching is controlled mainly by the residence time of pore water in soil, soil microbial activity, and content of organic matter and clay silicates.

  2. Soil solid-phase controls lead activity in soil solution.

    Science.gov (United States)

    Badawy, S H; Helal, M I D; Chaudri, A M; Lawlor, K; McGrath, S P

    2002-01-01

    Lead pollution of the environment is synonymous with civilization. It has no known biological function, and is naturally present in soil, but its presence in food crops is deemed undesirable. The concern regarding Pb is mostly due to chronic human and animal health effects, rather then phytotoxicity. However, not much is known about the chemistry and speciation of Pb in soils. We determined the activity of Pb2+, in near neutral and alkaline soils, representative of alluvial, desertic and calcareous soils of Egypt, using the competitive chelation method. Lead activity ranged from 10(-6.73) to 10(-4.83) M, and was negatively correlated with soil and soil solution pH (R2 = -0.92, P soil solution from the equation: log(Pb2+) = 9.9 - 2pH. A solubility diagram for the various Pb minerals found in soil was constructed using published thermodynamic data obtained from the literature, and our measured Pb2+ activities compared with this information. The measured Pb2+ activities were undersaturated with regard to the solubility of PbSiO3 in equilibrium with SiO2 (soil). However, they were supersaturated with regard to the solubilities of the Pb carbonate minerals PbCO3 (cerussite) and Pb3(CO3)2(OH)2 in equilibrium with atmospheric CO2 and hydroxide Pb(OH)2. They were also supersaturated with regard to the solubilities of the Pb phosphate minerals Pb3(PO4)2, Pb5(PO4)3OH, and Pb4O(PO4)2 in equilibrium with tricalcium phosphate and CaCO3. The activity of Pb2+ was not regulated by any mineral of known solubility in our soils, but possibly by a mixture of Pb carbonate and phosphate minerals.

  3. Feedbacks Between Soil Structure and Microbial Activities in Soil

    Science.gov (United States)

    Bailey, V. L.; Smith, A. P.; Fansler, S.; Varga, T.; Kemner, K. M.; McCue, L. A.

    2017-12-01

    Soil structure provides the physical framework for soil microbial habitats. The connectivity and size distribution of soil pores controls the microbial access to nutrient resources for growth and metabolism. Thus, a crucial component of soil research is how a soil's three-dimensional structure and organization influences its biological potential on a multitude of spatial and temporal scales. In an effort to understand microbial processes at scale more consistent with a microbial community, we have used soil aggregates as discrete units of soil microbial habitats. Our research has shown that mean pore diameter (x-ray computed tomography) of soil aggregates varies with the aggregate diameter itself. Analyzing both the bacterial composition (16S) and enzyme activities of individual aggregates showed significant differences in the relative abundances of key members the microbial communities associated with high enzyme activities compared to those with low activities, even though we observed no differences in the size of the biomass, nor in the overall richness or diversity of these communities. We hypothesize that resources and substrates have stimulated key populations in the aggregates identified as highly active, and as such, we conducted further research that explored how such key populations (i.e. fungal or bacterial dominated populations) alter pathways of C accumulation in aggregate size domains and microbial C utilization. Fungi support and stabilize soil structure through both physical and chemical effects of their hyphal networks. In contrast, bacterial-dominated communities are purported to facilitate micro- and fine aggregate stabilization. Here we quantify the direct effects fungal versus bacterial dominated communities on aggregate formation (both the rate of aggregation and the quality, quantity and distribution of SOC contained within aggregates). A quantitative understanding of the different mechanisms through which fungi or bacteria shape aggregate

  4. Oligomeric protein structure networks: insights into protein-protein interactions

    Directory of Open Access Journals (Sweden)

    Brinda KV

    2005-12-01

    Full Text Available Abstract Background Protein-protein association is essential for a variety of cellular processes and hence a large number of investigations are being carried out to understand the principles of protein-protein interactions. In this study, oligomeric protein structures are viewed from a network perspective to obtain new insights into protein association. Structure graphs of proteins have been constructed from a non-redundant set of protein oligomer crystal structures by considering amino acid residues as nodes and the edges are based on the strength of the non-covalent interactions between the residues. The analysis of such networks has been carried out in terms of amino acid clusters and hubs (highly connected residues with special emphasis to protein interfaces. Results A variety of interactions such as hydrogen bond, salt bridges, aromatic and hydrophobic interactions, which occur at the interfaces are identified in a consolidated manner as amino acid clusters at the interface, from this study. Moreover, the characterization of the highly connected hub-forming residues at the interfaces and their comparison with the hubs from the non-interface regions and the non-hubs in the interface regions show that there is a predominance of charged interactions at the interfaces. Further, strong and weak interfaces are identified on the basis of the interaction strength between amino acid residues and the sizes of the interface clusters, which also show that many protein interfaces are stronger than their monomeric protein cores. The interface strengths evaluated based on the interface clusters and hubs also correlate well with experimentally determined dissociation constants for known complexes. Finally, the interface hubs identified using the present method correlate very well with experimentally determined hotspots in the interfaces of protein complexes obtained from the Alanine Scanning Energetics database (ASEdb. A few predictions of interface hot

  5. Soil Radiological Characterisation Methodology

    International Nuclear Information System (INIS)

    Attiogbe, Julien; Aubonnet, Emilie; De Maquille, Laurence; De Moura, Patrick; Desnoyers, Yvon; Dubot, Didier; Feret, Bruno; Fichet, Pascal; Granier, Guy; Iooss, Bertrand; Nokhamzon, Jean-Guy; Ollivier Dehaye, Catherine; Pillette-Cousin, Lucien; Savary, Alain

    2014-12-01

    This report presents the general methodology and best practice approaches which combine proven existing techniques for sampling and characterisation to assess the contamination of soils prior to remediation. It is based on feedback of projects conducted by main French nuclear stakeholders involved in the field of remediation and dismantling (EDF, CEA, AREVA and IRSN). The application of this methodology will enable the project managers to obtain the elements necessary for the drawing up of files associated with remediation operations, as required by the regulatory authorities. It is applicable to each of the steps necessary for the piloting of remediation work-sites, depending on the objectives targeted (release into the public domain, re-use, etc.). The main part describes the applied statistical methodology with the exploratory analysis and variogram data, identification of singular points and their location. The results obtained permit assessment of a mapping to identify the contaminated surface and subsurface areas. It stakes the way for radiological site characterisation since the initial investigations from historical and functional analysis to check that the remediation objectives have been met. It follows an example application from the feedback of the remediation of a contaminated site on the Fontenay aux Roses facility. It is supplemented by a glossary of main terms used in the field from different publications or international standards. This technical report is a support of the ISO Standard ISO ISO/TC 85/SC 5 N 18557 'Sampling and characterisation principles for soils, buildings and infrastructures contaminated by radionuclides for remediation purposes'. (authors) [fr

  6. Carcinogenicity of soil extracts

    Energy Technology Data Exchange (ETDEWEB)

    Shcherbak, N P

    1970-01-01

    A total of 270 3-mo-old mice, hybrids of the C57BL and CBA strains which are highly susceptible to carcinogens, were painted on the skin (2-3 admin./week) with 3-4 drops of (1) a concentrated benzene extract of soil taken near a petroleum refinery with a 3,4 benzpyrene (BP) content of 0.22%; (2) a 0.22% soln of pure BP in benzene; (3) a concentrated benzene extract of soil taken from an old residential area of Moscow (BP content 0.0004%); (4) a 0.0004% BP soln in benzene; and (5) pure benzene. Only mice in the first 2 groups developed tumors. In group (1), 8 mice had papillomas, 46 had skin cancer, 1 had a sarcoma and 2 had plasmocytomas. In group (2) all 60 animals had skin cancer. Lung metastases were present at autopsy in 5 mice in group (1) and in 10 mice in group (2); in some cases, these tumors were multiple. Lymph node metastases were found in 6 mice in group (1) and in 10 mice in group (2). Tumors developed more slowly in group (1) than in group (2).

  7. Soil physical land degradation processes

    Science.gov (United States)

    Horn, Rainer

    2017-04-01

    According to the European Soil Framework Directive (2006) soil compaction is besides water and wind erosion one of the main physical reasons and threats of soil degradation. It is estimated, that 32% of the subsoils in Europe are highly degraded and 18% moderately vulnerable to compaction. The problem is not limited to crop land or forest areas (especially because of non-site adjusted harvesting machines) but is also prevalent in rangelands and grassland, and even in so called natural non-disturbed systems. The main reasons for an intense increase in compacted agricultural or forested regions are the still increasing masses of the machines as well the increased frequency of wheeling under non favorable site conditions. Shear and vibration induced soil deformation enhances the deterioration of soil properties especially if the soil water content is very high and the internal soil strength very low. The same is true for animal trampling in combination with overgrazing of moist to wet pastures which subsequently causes a denser (i.e. reduced proportion of coarse pores with smaller continuity) but still structured soil horizons and will finally end in a compacted platy structure. In combination with high water content and shearing due to trampling therefore results in a complete muddy homogeneous soil with no structure at all. (Krümmelbein et al. 2013) Site managements of arable, forestry or horticulture soils requires a sufficiently rigid pore system which guarantees water, gas and heat exchange, nutrient transport and adsorption as well as an optimal rootability in order to avoid subsoil compaction. Such pore system also guarantees a sufficient microbial activity and composition in order to also decompose the plant etc. debris. It is therefore essential that well structured horizons dominate in soils with at best subangular blocky structure or in the top A- horizons a crumbly structure due to biological activity. In contrast defines the formation of a platy

  8. Crude protein changes on grassland along a degradation gradient ...

    African Journals Online (AJOL)

    The aim with this investigation was to quantify the impact of different veld condition classes, viz. poor, moderate and good on soil-water utilization (SWU: crude protein produced per unit of evapotranspiration), during four growing seasons (2000/01 – 2003/2004). Evapotranspiration was determined by quantifying the ...

  9. Effect of sulfate fertilization on soil biota in grassland columns

    Science.gov (United States)

    Ikoyi, Israel; Donohue, John; Fowler, Andrew; Schmalenberger, Achim

    2017-04-01

    Sulfur (S) is an important macronutrient element in plant nutrition as a component of protein, enzymes, enzyme cofactors as well as being the major constituent of the amino acids cysteine and methionine. Organically bound S is the predominant form of S in the soil constituting up to 95% of S in agricultural soils. The most important form of S in terms of plant nutrition is inorganic sulfate which forms only about 5% of the total soil S content. Air pollution was the major source of S (as SO2) for plants, with up to 80% of the S obtained from this source. However, common effects of S limitation on crops such as chlorosis, yield reduction, and decrease in crop quality are becoming increasingly evident as atmospheric S supply has decreased in recent years. Recent research has shown that organically-bound S in soils is also plant-bioavailable, likely due to interconversion of organic S forms to inorganic sulfate by soil microbes. In this study, soil columns were setup in a greenhouse using moderate S (equivalent to Wisconsin S soil availability index of below 30) soils. The columns were planted with Lolium perenne and fertilized with 0 (control), 5 (low), 10 (medium) and 20 (high) kg/ha sulfate S alongside a full complement of other nutrients. Results after 14 weeks of management show a significant decrease (Pbacterial abundance of heterotrophs and aromatic sulfonate-utilizing bacteria upon S fertilization. In addition, soil from the top 20 cm of the column had significantly higher sulfatase activity compared to the bottom 20 cm. The medium and high S treatments had significantly higher grass dry matter yield compared to the control and low S treatments. All S treatments significantly shifted the bacterial community structure compared to the control. Overall, our preliminary results suggest that applying 5 kg/ ha S had similar effects on the soil biota as the control while the application of medium and high S had similar effects on most parameters. Moreover, this study

  10. [Effects of interaction between vermicompost and probiotics on soil nronerty, yield and quality of tomato].

    Science.gov (United States)

    Shen, Fei; Zhu, Tong-bin; Teng, Ming-jiao; Chen, Yue; Liu, Man-qiang; Hu, Feng; Li, Hui-xin

    2016-02-01

    In this study, we investigated the effects of two strains of probiotic bacteria (Bacillus megaterium BM and Bacillus amyloliquefaciens BA) combined with chemical fertilizers and vermicompost on the soil property, the yield and quality of tomato. The results showed that under the same nutrient level, vermicompost significantly increased the yield, soluble sugar and protein contents of fruit, the soil pH and available phosphorus when compared with chemical fertilizers. Vermicompost combined with probiotics not only increased the tomato yield, soluble sugar, protein and vitamin C contents, sugar/acid ratio of fruit, and reduced the organic acid and nitrate nitrogen contents of fruit, also increased the soil pH and nitrate nitrogen content, and reduced soil electric conductivity when compared with vermicompost treatment. This improved efficiency was better than that by chemical fertilizers combined with probiotics. For BA and BM applied with chemical fertilizers or vermicompost, both stains had no significant effect on tomato quality. When co-applied with vermicompost, BA and BM showed significant difference in tomato yield. High soil available phosphorus content was determined when BM was combined with chemical fertilizers, while high soil available potassium content was obtained when BA was combined with vermicompost. Our results suggested that probiotics and vermicompost could be used as alternatives of chemical fertilizers in tomato production and soil fertility improvement.

  11. Migration of 137Cs, 90Sr, 239,240Pu and 241Am in the chain soil-soil solution-plant. The soil-soil solution link

    International Nuclear Information System (INIS)

    Sokolik, G.A.; Ovsyannikova, S.V.; Kil'chitskaya, S.L.; Ehjsmont, E.A.; Zhukovich, N.V.; Kimlenko, I.M.; Duksina, V.V.; Rubinchik, S.Ya.

    1999-01-01

    The mobility of 137 Cs, 90 Sr, 239,240 Pu and 241 Am in the link soil-soil solution is analysed for different soil types on the basis of radionuclide distribution coefficients between solid and liquid soil phases. The distribution coefficients allow to differentiate soils in correlation with radionuclide migration rate from the solid phase to the soil solution. The reasons of different radionuclide mobility are considered

  12. Soil strength and forest operations

    NARCIS (Netherlands)

    Beekman, F.

    1987-01-01

    The use of heavy machinery and transport vehicles is an integral part of modern forest operations. This use often causes damage to the standing trees and to the soil. In this study the effects of vehicle traffic on the soil are analysed and the possible consequences for forest management

  13. Soil remediation process and system

    International Nuclear Information System (INIS)

    Monlux, K.J.

    1992-01-01

    This patent describes a process for remediation of soil containing up to about 30,000 ppm hydrocarbon contaminants. It comprises: providing hydrocarbon-contaminated soil in a divided condition of minus 1 1/2 double-prime to a first confined zone where it is exposed to an open flame; heating while agitating the contaminated soil in an oxidizing atmosphere in the first zone to a temperature below soil ignition within a range of from about 375 degrees F. to about 750 degrees F. for a time sufficient to drive off as vapors a substantial percentage of the hydrocarbon contaminates from the soil; passing hot gases containing the hydrocarbon contaminates from the soil; passing hot gases containing the hydrocarbon vapors from the first zone to a second zone; recovering heat from the hot gases in the second zone to condense a substantial percentage of the hydrocarbon vapors as liquid hydrocarbons; recovering the liquid hydrocarbons; and removing the soil from the first zone as remediated soil having below about 1000 ppm hydrocarbon contaminants

  14. Estimating respiration of roots in soil: interactions with soil CO2, soil temperature and soil water content

    NARCIS (Netherlands)

    Bouma, T.J.; Nielsen, K.F.; Eissenstat, D.M.; Lynch, J.P.

    1997-01-01

    Little information is available on the variability of the dynamics of the actual and observed root respiration rate in relation to abiotic factors. In this study, we describe I) interactions between soil CO2 concentration, temperature, soil water content and root respiration, and II) the effect of

  15. Soil decontamination at Rocky Flats

    International Nuclear Information System (INIS)

    Olsen, R.L.; Hayden, J.A.; Alford, C.E.; Kochen, R.L.; Stevens, J.R.

    1979-01-01

    A soils decontamination project was initiated, to remove actinides from soils at Rocky Flats. Wet screening, attrition scrubbing with Calgon at high pH, attrition scrubbing at low pH, and cationic flotation were investigated. Pilot plant studies were carried out. Conceptual designs have been generated for mounting the process in semi-trailers

  16. Soil Microbiology, Ecology, and Biochemistry

    Science.gov (United States)

    The 4th edition of Soil Microbiology, Ecology, and Biochemistry Edited by Eldor Paul continues in the vein of the 3rd edition by providing an excellent, broad-reaching introduction to soil biology. The new edition improves on the previous by providing extensive supplementary materials, links to outs...

  17. Solute diffusivity in undisturbed soil

    DEFF Research Database (Denmark)

    Lægdsmand, Mette; Møldrup, Per; Schjønning, Per

    2012-01-01

    Solute diffusivity in soil plays a major role in many important processes with relation to plant growth and environmental issues. Soil solute diffusivity is affected by the volumetric water content as well as the morphological characteristics of water-filled pores. The solute diffusivity in intact...

  18. Soil biodiversity for agricultural sustainability

    NARCIS (Netherlands)

    Brussaard, L.; Ruiter, de P.C.; Brown, G.G.

    2007-01-01

    We critically highlight some evidence for the importance of soil biodiversity to sustaining (agro-)ecosystem functioning and explore directions for future research. We first deal with resistance and resilience against abiotic disturbance and stress. There is evidence that soil biodiversity does

  19. Monitoring and evaluating soil quality

    NARCIS (Netherlands)

    Bloem, J.; Schouten, A.J.; Sørensen, S.J.; Rutgers, M.; Werf, van der A.K.; Breure, A.M.

    2006-01-01

    This book provides a selection of microbiological methods that are already applied in regional or national soil quality monitoring programs. It is split into two parts: part one gives an overview of approaches to monitoring, evaluating and managing soil quality. Part two provides a selection of

  20. Soils and water [Chapter 18

    Science.gov (United States)

    Goran Berndes; Heather Youngs; Maria Victoria Ramos Ballester; Heitor Cantarella; Annette L. Cowie; Graham Jewitt; Luiz Antonio Martinelli; Dan Neary

    2015-01-01

    Bioenergy production can have positive or negative impacts on soil and water. To best understand these impacts, the effects of bioenergy systems on water and soil resources should be assessed as part of an integrated analysis considering environmental, social and economic dimensions. Bioenergy production systems that are strategically integrated in the landscape to...

  1. Mapping specific soil functions based on digital soil property maps

    Science.gov (United States)

    Pásztor, László; Fodor, Nándor; Farkas-Iványi, Kinga; Szabó, József; Bakacsi, Zsófia; Koós, Sándor

    2016-04-01

    Quantification of soil functions and services is a great challenge in itself even if the spatial relevance is supposed to be identified and regionalized. Proxies and indicators are widely used in ecosystem service mapping. Soil services could also be approximated by elementary soil features. One solution is the association of soil types with services as basic principle. Soil property maps however provide quantified spatial information, which could be utilized more versatilely for the spatial inference of soil functions and services. In the frame of the activities referred as "Digital, Optimized, Soil Related Maps and Information in Hungary" (DOSoReMI.hu) numerous soil property maps have been compiled so far with proper DSM techniques partly according to GSM.net specifications, partly by slightly or more strictly changing some of its predefined parameters (depth intervals, pixel size, property etc.). The elaborated maps have been further utilized, since even DOSoReMI.hu was intended to take steps toward the regionalization of higher level soil information (secondary properties, functions, services). In the meantime the recently started AGRAGIS project requested spatial soil related information in order to estimate agri-environmental related impacts of climate change and support the associated vulnerability assessment. One of the most vulnerable services of soils in the context of climate change is their provisioning service. In our work it was approximated by productivity, which was estimated by a sequential scenario based crop modelling. It took into consideration long term (50 years) time series of both measured and predicted climatic parameters as well as accounted for the potential differences in agricultural practice and crop production. The flexible parametrization and multiple results of modelling was then applied for the spatial assessment of sensitivity, vulnerability, exposure and adaptive capacity of soils in the context of the forecasted changes in

  2. Protein surface shielding agents in protein crystallization

    International Nuclear Information System (INIS)

    Hašek, J.

    2011-01-01

    The crystallization process can be controlled by protein surface shielding agents blocking undesirable competitive adhesion modes during non-equilibrium processes of deposition of protein molecules on the surface of growing crystalline blocks. The hypothesis is based on a number of experimental proofs from diffraction experiments and also retrieved from the Protein Data Bank. The molecules adhering temporarily on the surface of protein molecules change the propensity of protein molecules to deposit on the crystal surface in a definite position and orientation. The concepts of competitive adhesion modes and protein surface shielding agents acting on the surface of molecules in a non-equilibrium process of protein crystallization provide a useful platform for the control of crystallization. The desirable goal, i.e. a transient preference of a single dominating adhesion mode between protein molecules during crystallization, leads to uniform deposition of proteins in a crystal. This condition is the most important factor for diffraction quality and thus also for the accuracy of protein structure determination. The presented hypothesis is a generalization of the experimentally well proven behaviour of hydrophilic polymers on the surface of protein molecules of other compounds

  3. Soil organic carbon dynamics jointly controlled by climate, carbon inputs, soil properties and soil carbon fractions.

    Science.gov (United States)

    Luo, Zhongkui; Feng, Wenting; Luo, Yiqi; Baldock, Jeff; Wang, Enli

    2017-10-01

    Soil organic carbon (SOC) dynamics are regulated by the complex interplay of climatic, edaphic and biotic conditions. However, the interrelation of SOC and these drivers and their potential connection networks are rarely assessed quantitatively. Using observations of SOC dynamics with detailed soil properties from 90 field trials at 28 sites under different agroecosystems across the Australian cropping regions, we investigated the direct and indirect effects of climate, soil properties, carbon (C) inputs and soil C pools (a total of 17 variables) on SOC change rate (r C , Mg C ha -1  yr -1 ). Among these variables, we found that the most influential variables on r C were the average C input amount and annual precipitation, and the total SOC stock at the beginning of the trials. Overall, C inputs (including C input amount and pasture frequency in the crop rotation system) accounted for 27% of the relative influence on r C , followed by climate 25% (including precipitation and temperature), soil C pools 24% (including pool size and composition) and soil properties (such as cation exchange capacity, clay content, bulk density) 24%. Path analysis identified a network of intercorrelations of climate, soil properties, C inputs and soil C pools in determining r C . The direct correlation of r C with climate was significantly weakened if removing the effects of soil properties and C pools, and vice versa. These results reveal the relative importance of climate, soil properties, C inputs and C pools and their complex interconnections in regulating SOC dynamics. Ignorance of the impact of changes in soil properties, C pool composition and C input (quantity and quality) on SOC dynamics is likely one of the main sources of uncertainty in SOC predictions from the process-based SOC models. © 2017 John Wiley & Sons Ltd.

  4. Soil Erosion Threatens Food Production

    Directory of Open Access Journals (Sweden)

    Michael Burgess

    2013-08-01

    Full Text Available Since humans worldwide obtain more than 99.7% of their food (calories from the land and less than 0.3% from the oceans and aquatic ecosystems, preserving cropland and maintaining soil fertility should be of the highest importance to human welfare. Soil erosion is one of the most serious threats facing world food production. Each year about 10 million ha of cropland are lost due to soil erosion, thus reducing the cropland available for world food production. The loss of cropland is a serious problem because the World Health Organization and the Food and Agricultural Organization report that two-thirds of the world population is malnourished. Overall, soil is being lost from agricultural areas 10 to 40 times faster than the rate of soil formation imperiling humanity’s food security.

  5. Effect of soil saturation on denitrification in a grassland soil

    Directory of Open Access Journals (Sweden)

    L. M. Cardenas

    2017-10-01

    Full Text Available Nitrous oxide (N2O is of major importance as a greenhouse gas and precursor of ozone (O3 destruction in the stratosphere mostly produced in soils. The soil-emitted N2O is generally predominantly derived from denitrification and, to a smaller extent, nitrification, both processes controlled by environmental factors and their interactions, and are influenced by agricultural management. Soil water content expressed as water-filled pore space (WFPS is a major controlling factor of emissions and its interaction with compaction, has not been studied at the micropore scale. A laboratory incubation was carried out at different saturation levels for a grassland soil and emissions of N2O and N2 were measured as well as the isotopocules of N2O. We found that flux variability was larger in the less saturated soils probably due to nutrient distribution heterogeneity created from soil cracks and consequently nutrient hot spots. The results agreed with denitrification as the main source of fluxes at the highest saturations, but nitrification could have occurred at the lower saturation, even though moisture was still high (71 % WFSP. The isotopocules data indicated isotopic similarities in the wettest treatments vs. the two drier ones. The results agreed with previous findings where it is clear there are two N pools with different dynamics: added N producing intense denitrification vs. soil N resulting in less isotopic fractionation.

  6. know Soil Know Life - Getting Kids Excited About Soils

    Science.gov (United States)

    Lindbo, David L.; Robinson, Clay; Kozlowski, Deborah

    2014-05-01

    In the United States soils are often taught in primary school (grade 3-6) but with little excitement or passion. We have been working with schools and teachers to bring our passion about soils to this audience. The methods and message can be conveyed simply and effectively by engaging the students in a dialog and through kinematic learning. Our approach is to begin with a simple question - what are 4 things we cannot live without. The answer - Air, Water, Sunlight, and Soil. Most students say "food, shelter, clothing, plants, animals etc." so we then explain all of those come from soil. This leads us to a quick "dance" illustrating that without soils we would be 'Hungry. Homeless, and Naked". The results are that students and teachers remember this simple message. From this point it is our hope that students will continue to understand the importance of soils and stop treating soils like dirt. Other simple exercises for this younger audience will also be presented.

  7. Determination of chemical availability of cadmium and zinc in soils using inert soil moisture samplers.

    Science.gov (United States)

    Knight, B P; Chaudri, A M; McGrath, S P; Giller, K E

    1998-01-01

    A rapid method for extracting soil solutions using porous plastic soil-moisture samplers was combined with a cation resin equilibration based speciation technique to look at the chemical availability of metals in soil. Industrially polluted, metal sulphate amended and sewage sludge treated soils were used in our study. Cadmium sulphate amended and industrially contaminated soils all had > 65% of the total soil solution Cd present as free Cd2+. However, increasing total soil Cd concentrations by adding CdSO4 resulted in smaller total soil solution Cd. Consequently, the free Cd2+ concentrations in soil solutions extracted from these soils were smaller than in the same soil contaminated by sewage sludge addition. Amendment with ZnSO4 gave much greater concentrations of free Zn2+ in soil solutions compared with the same soil after long-term Zn contamination via sewage sludge additions. Our results demonstrate the difficulty in comparing total soil solution and free metal ion concentrations for soils from different areas with different physiochemical properties and sources of contamination. However, when comparing the same Woburn soil, Cd was much less available as Cd2+ in soil solution from the CdSO4 amended soils compared with soil contaminated by about 36 years of sewage sludge additions. In contrast, much more Zn was available in soil solution as free Zn2+ in the ZnSO4 amended soils compared with the sewage sludge treated soils.

  8. Uncertainty in soil carbon accounting due to unrecognized soil erosion.

    Science.gov (United States)

    Sanderman, Jonathan; Chappell, Adrian

    2013-01-01

    The movement of soil organic carbon (SOC) during erosion and deposition events represents a major perturbation to the terrestrial carbon cycle. Despite the recognized impact soil redistribution can have on the carbon cycle, few major carbon accounting models currently allow for soil mass flux. Here, we modified a commonly used SOC model to include a soil redistribution term and then applied it to scenarios which explore the implications of unrecognized erosion and deposition for SOC accounting. We show that models that assume a static landscape may be calibrated incorrectly as erosion of SOC is hidden within the decay constants. This implicit inclusion of erosion then limits the predictive capacity of these models when applied to sites with different soil redistribution histories. Decay constants were found to be 15-50% slower when an erosion rate of 15 t soil ha(-1)  yr(-1) was explicitly included in the SOC model calibration. Static models cannot account for SOC change resulting from agricultural management practices focused on reducing erosion rates. Without accounting for soil redistribution, a soil sampling scheme which uses a fixed depth to support model development can create large errors in actual and relative changes in SOC stocks. When modest levels of erosion were ignored, the combined uncertainty in carbon sequestration rates was 0.3-1.0 t CO2  ha(-1)  yr(-1) . This range is similar to expected sequestration rates for many management options aimed at increasing SOC levels. It is evident from these analyses that explicit recognition of soil redistribution is critical to the success of a carbon monitoring or trading scheme which seeks to credit agricultural activities. © 2012 Blackwell Publishing Ltd.

  9. Carbon input increases microbial nitrogen demand, but not microbial nitrogen mining in boreal forest soils

    Science.gov (United States)

    Wild, Birgit; Alaei, Saeed; Bengtson, Per; Bodé, Samuel; Boeckx, Pascal; Schnecker, Jörg; Mayerhofer, Werner; Rütting, Tobias

    2016-04-01

    Plant primary production at mid and high latitudes is often limited by low soil N availability. It has been hypothesized that plants can indirectly increase soil N availability via root exudation, i.e., via the release of easily degradable organic compounds such as sugars into the soil. These compounds can stimulate microbial activity and extracellular enzyme synthesis, and thus promote soil organic matter (SOM) decomposition ("priming effect"). Even more, increased C availability in the rhizosphere might specifically stimulate the synthesis of enzymes targeting N-rich polymers such as proteins that store most of the soil N, but are too large for immediate uptake ("N mining"). This effect might be particularly important in boreal forests, where plants often maintain high primary production in spite of low soil N availability. We here tested the hypothesis that increased C availability promotes protein depolymerization, and thus soil N availability. In a laboratory incubation experiment, we added 13C-labeled glucose to a range of soil samples derived from boreal forests across Sweden, and monitored the release of CO2 by C mineralization, distinguishing between CO2 from the added glucose and from the native, unlabeled soil organic C (SOC). Using a set of 15N pool dilution assays, we further measured gross rates of protein depolymerization (the breakdown of proteins into amino acids) and N mineralization (the microbial release of excess N as ammonium). Comparing unamended control samples, we found a high variability in C and N mineralization rates, even when normalized by SOC content. Both C and N mineralization were significantly correlated to SOM C/N ratios, with high C mineralization at high C/N and high N mineralization at low C/N, suggesting that microorganisms adjusted C and N mineralization rates to the C/N ratio of their substrate and released C or N that was in excess. The addition of glucose significantly stimulated the mineralization of native SOC in soils

  10. Soil decontamination with Extraksol

    International Nuclear Information System (INIS)

    Paquin, J.; Mourato, D.

    1989-01-01

    The Extraksol process is a mobile decontamination technology which treats unconsolidated materials by solvent extraction. Treatment with Extraksol involves material washing, drying and solvent regeneration. Contaminant removal is achieved through desorption/dissolution mechanisms. The treated material is dry and acceptable to be reinstalled in its original location. The process provides a fast, efficient and versatile alternative for decontamination of soil and sludge. The organic contaminants extracted from the matrix are transferred to the extraction fluids. These are thereafter concentrated in the residues of distillation after solvent regeneration. Removal and concentration of the contaminants ensures an important waste volume reduction. This paper presents the process is operational principles and the steps involved in Extraksol's development with results of the pilot tests and full-scale demonstrations

  11. The use of isotopes in soil fertility and soil chemistry

    International Nuclear Information System (INIS)

    Neptune, A.M.L.; Muraoka, T.

    1978-01-01

    The concept of radioactive and enriched stable isotopes is reminded. The main topics studied with isotopes which are pointed out are the following: the isotopic exchange and its application; the E and L values; the determination of CEC; the fixing capacity of some ions by the soil particles; the measurement of the A value; the efficiency of fertilizers utilization, the interaction between nutrients, their movements through the soil, the residual effect of the fertilizers and, finally, the root system and soil organic matter. (author) [pt

  12. Protein sequence comparison and protein evolution

    Energy Technology Data Exchange (ETDEWEB)

    Pearson, W.R. [Univ. of Virginia, Charlottesville, VA (United States). Dept. of Biochemistry

    1995-12-31

    This tutorial was one of eight tutorials selected to be presented at the Third International Conference on Intelligent Systems for Molecular Biology which was held in the United Kingdom from July 16 to 19, 1995. This tutorial examines how the information conserved during the evolution of a protein molecule can be used to infer reliably homology, and thus a shared proteinfold and possibly a shared active site or function. The authors start by reviewing a geological/evolutionary time scale. Next they look at the evolution of several protein families. During the tutorial, these families will be used to demonstrate that homologous protein ancestry can be inferred with confidence. They also examine different modes of protein evolution and consider some hypotheses that have been presented to explain the very earliest events in protein evolution. The next part of the tutorial will examine the technical aspects of protein sequence comparison. Both optimal and heuristic algorithms and their associated parameters that are used to characterize protein sequence similarities are discussed. Perhaps more importantly, they survey the statistics of local similarity scores, and how these statistics can both be used to improve the selectivity of a search and to evaluate the significance of a match. They them examine distantly related members of three protein families, the serine proteases, the glutathione transferases, and the G-protein-coupled receptors (GCRs). Finally, the discuss how sequence similarity can be used to examine internal repeated or mosaic structures in proteins.

  13. Protein Structure Prediction by Protein Threading

    Science.gov (United States)

    Xu, Ying; Liu, Zhijie; Cai, Liming; Xu, Dong

    The seminal work of Bowie, Lüthy, and Eisenberg (Bowie et al., 1991) on "the inverse protein folding problem" laid the foundation of protein structure prediction by protein threading. By using simple measures for fitness of different amino acid types to local structural environments defined in terms of solvent accessibility and protein secondary structure, the authors derived a simple and yet profoundly novel approach to assessing if a protein sequence fits well with a given protein structural fold. Their follow-up work (Elofsson et al., 1996; Fischer and Eisenberg, 1996; Fischer et al., 1996a,b) and the work by Jones, Taylor, and Thornton (Jones et al., 1992) on protein fold recognition led to the development of a new brand of powerful tools for protein structure prediction, which we now term "protein threading." These computational tools have played a key role in extending the utility of all the experimentally solved structures by X-ray crystallography and nuclear magnetic resonance (NMR), providing structural models and functional predictions for many of the proteins encoded in the hundreds of genomes that have been sequenced up to now.

  14. Integrated use of biochar: a tool for improving soil and wheat quality of degraded soil under wheat-maize cropping pattern

    International Nuclear Information System (INIS)

    Ali, K.; Arif, M.; Jan, M.T.

    2015-01-01

    Wheat quality, nutrient uptake and nutrient use efficiency are significantly influenced by nutrient sources and application rate. To investigate the integrative effect of biochar, farmyard manure (FYM) and nitrogen (organic and inorganic soil amendments) in a wheat-maize cropping system, a two year study was designed to assess the interactive outcome of biochar, FYM and nitrogenous fertilizer on wheat nitrogen (N) parameters and associated soil quality parameters. Three levels of biochar (0, 25 and 50 t ha-1), two levels of FYM (5 and 10 t ha-1) and two levels of nitrogen fertilizer (60 and 120 kg ha-1) were used in the study. Biochar application displayed a significantly increased in wheat leaf, stem, straw and grain N content; grain and total N-uptake and grain protein content by 24, 20, 24, 56, 50, 17 and 20% respectively. Similarly, biochar application significantly increased soil total N (TN) and soil mineral N (SMN) by 63 and 40% respectively in second year. FYM application increased grain, leaf and straw N content by 20, 19.5 and 18% respectively, and increased total N-uptake and grain protein content by 49 and 19% respectively. FYM increased soil TN and SMN by 63 and 32% in both the years of the experiment. Mineral N application increased soil TN by over a half and SMN by a third, and grain protein content increased 16%. In contrast, nitrogen use efficiency (NUE) decreased for all amendments relative to the control. However, biochar treated plots improved NUE by 38% compared to plots without biochar. In conclusion, this field experiment has illustrated the potential of biochar to bring about short-term benefits in wheat and soil quality parameters in wheat-maize cropping systems. However, the long-term benefits remain to be quantified. (author)

  15. Developments and departures in the philosophy of soil science

    Science.gov (United States)

    Traditional soil science curriculums provide comprehensive instruction on soil properties, soil classification, and the physical, chemical, and biological processes that occur in soils. This reductionist perspective is sometimes balanced with a more holistic perspective that focuses on soils as natu...

  16. The Spatial Variability of Soil Dehydrogenase Activity: A Survey in Urban Soils

    OpenAIRE

    Kizilkaya, Ridvan; Aşkin, Tayfun

    2007-01-01

    Information on soil microorganisms and their activity used to determine microbiological characteristics are very important for soil quality and productivity. Studies of enzyme activities provide information on the biochemical processes occurring in soil. There is growing evidence that soil biological parameters may be potential and sensitive indicators of soil ecological conditions and soil management. Soil microbiological parameters may be evaluated statistically due to application of geosta...

  17. Soil carbon dynamics inferred from carbon isotope compositions of soil organic matter and soil respiration

    International Nuclear Information System (INIS)

    Koarashi, Jun; Asano, Tomohiro; Iida, Takao; Moriizumi, Jun

    2004-01-01

    To better understand 14 C cycling in terrestrial ecosystems, 14 C abundances were evaluated for fractionated soil organic matter (SOM) and soil respiration in an urban forest. In 2001 soil profile, Δ 14 C values of litter and bulk SOM increased rapidly from litter surface (62.7 per mille) to uppermost mineral soil layer (244.9 per mille), and then decreased sharply to 6 cm depth of mineral soil (125.0 per mille). Carbon enriched in 14 C by atmospheric nuclear weapons testing had penetrated to at least 16 cm depth of mineral soil. The average Δ 14 C in atmospheric CO 2 was 58.8 per mille in August 2001, suggesting recent carbon input to the topmost litter layer. Although a similar depth distribution was observed for Δ 14 C values of residual SOM after acid hydrolysis, the Δ 14 C values were slightly lower than those in bulk SOM. This indicates input of 'bomb' C into this organic fraction and higher 14 C abundance in acid-soluble SOM. The most of CO 2 may be derived from the microbial decomposition of the acid-soluble, or labile, SOM. Therefore, the labile SOM may become most influential pool for soil carbon cycling. In contrast, carbon in base-insoluble SOM remained considerably low in 14 C abundance at all depths, suggesting no or little incorporation of 'bomb' C to this fraction. Values of Δ 14 C in soil respiration ranged from 91.9 to 146.4 per mille in August 2001, showing a significant contribution from decomposition of SOM fixed over past 2-40 years. These results indicate that the use of bulk SOM as a representative of soil carbon pool would lead to severe misunderstand of the soil C dynamics on decadal and shorter time scales. (author)

  18. Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

    Science.gov (United States)

    Fierer, Noah; Leff, Jonathan W; Adams, Byron J; Nielsen, Uffe N; Bates, Scott Thomas; Lauber, Christian L; Owens, Sarah; Gilbert, Jack A; Wall, Diana H; Caporaso, J Gregory

    2012-12-26

    For centuries ecologists have studied how the diversity and functional traits of plant and animal communities vary across biomes. In contrast, we have only just begun exploring similar questions for soil microbial communities despite soil microbes being the dominant engines of biogeochemical cycles and a major pool of living biomass in terrestrial ecosystems. We used metagenomic sequencing to compare the composition and functional attributes of 16 soil microbial communities collected from cold deserts, hot deserts, forests, grasslands, and tundra. Those communities found in plant-free cold desert soils typically had the lowest levels of functional diversity (diversity of protein-coding gene categories) and the lowest levels of phylogenetic and taxonomic diversity. Across all soils, functional beta diversity was strongly correlated with taxonomic and phylogenetic beta diversity; the desert microbial communities were clearly distinct from the nondesert communities regardless of the metric used. The desert communities had higher relative abundances of genes associated with osmoregulation and dormancy, but lower relative abundances of genes associated with nutrient cycling and the catabolism of plant-derived organic compounds. Antibiotic resistance genes were consistently threefold less abundant in the desert soils than in the nondesert soils, suggesting that abiotic conditions, not competitive interactions, are more important in shaping the desert microbial communities. As the most comprehensive survey of soil taxonomic, phylogenetic, and functional diversity to date, this study demonstrates that metagenomic approaches can be used to build a predictive understanding of how microbial diversity and function vary across terrestrial biomes.

  19. Polymer Directed Protein Assemblies

    NARCIS (Netherlands)

    van Rijn, Patrick

    2013-01-01

    Protein aggregation and protein self-assembly is an important occurrence in natural systems, and is in some form or other dictated by biopolymers. Very obvious influences of biopolymers on protein assemblies are, e. g., virus particles. Viruses are a multi-protein assembly of which the morphology is

  20. Amino acids and proteins

    Science.gov (United States)

    A balanced, safe diet with proteins is important to meet nutritional requirements. Proteins occur in animal as well as vegetable products in important quantities. In some countries, many people obtain much of their protein from animal products. In other regions, the major portion of dietary protein ...

  1. Soil CO2 Dynamics in a Tree Island Soil of the Pantanal: The Role of Soil Water Potential

    Science.gov (United States)

    Johnson, Mark S.; Couto, Eduardo Guimarães; Pinto Jr, Osvaldo B.; Milesi, Juliana; Santos Amorim, Ricardo S.; Messias, Indira A. M.; Biudes, Marcelo Sacardi

    2013-01-01

    The Pantanal is a biodiversity hotspot comprised of a mosaic of landforms that differ in vegetative assemblages and flooding dynamics. Tree islands provide refuge for terrestrial fauna during the flooding period and are particularly important to the regional ecosystem structure. Little soil CO2 research has been conducted in this region. We evaluated soil CO2 dynamics in relation to primary controlling environmental parameters (soil temperature and soil water). Soil respiration was computed using the gradient method using in situ infrared gas analyzers to directly measure CO2 concentration within the soil profile. Due to the cost of the sensors and associated equipment, this study was unreplicated. Rather, we focus on the temporal relationships between soil CO2 efflux and related environmental parameters. Soil CO2 efflux during the study averaged 3.53 µmol CO2 m−2 s−1, and was equivalent to an annual soil respiration of 1220 g C m−2 y−1. This efflux value, integrated over a year, is comparable to soil C stocks for 0–20 cm. Soil water potential was the measured parameter most strongly associated with soil CO2 concentrations, with high CO2 values observed only once soil water potential at the 10 cm depth approached zero. This relationship was exhibited across a spectrum of timescales and was found to be significant at a daily timescale across all seasons using conditional nonparametric spectral Granger causality analysis. Hydrology plays a significant role in controlling CO2 efflux from the tree island soil, with soil CO2 dynamics differing by wetting mechanism. During the wet-up period, direct precipitation infiltrates soil from above and results in pulses of CO2 efflux from soil. The annual flood arrives later, and saturates soil from below. While CO2 concentrations in soil grew very high under both wetting mechanisms, the change in soil CO2 efflux was only significant when soils were wet from above. PMID:23762259

  2. Decontamination of hydrocarbon contaminated soil

    International Nuclear Information System (INIS)

    Smith, A.J.

    1991-01-01

    This patent describes the method of treating hydrocarbon contaminated soil. It comprises forming the soil into a flowing particulate stream, forming an aqueous liquid mixture of water and treating substance that reacts with hydrocarbon to form CO 2 and water, dispersing the liquid mixture into the particulate soil stream to wet the particulate, allowing the substance to react with the wetted soil particulate to thereby form CO 2 and water, thereby the resultant soil is beneficially treated, the stream being freely projected to dwell at a level and then fall, and the dispersing includes spraying the liquid mixture into the projected stream at the dwell, the substance consisting of natural bacteria, and at a concentration level in the mixture of between 100 to 3,000 PPM of bacteria to water, the soil forming step including impacting the soil to reduce it to particles less than about 1 inches in cross dimension, and including forming the wetting particulate into a first layer on a surface to allow the substance to react

  3. Sustaining "the Genius of Soils"

    Science.gov (United States)

    Sposito, G.

    2011-12-01

    Soils are weathered porous earth surficial materials that exhibit an approximately vertical stratification reflecting the continual action of percolating water and living organisms. They are complex open, multicomponent, multiphase biogeochemical systems which function as both provisioning and regulatory agents in terrestrial ecosystems while influencing aquatic ecosystems through their impacts on evapotranspiration and runoff. The ability of soils to engage in their supportive ecosystem functions depends on what has been termed metaphorically as their "natural capital," the defining properties that condition soil response to biological, geological, and hydrological processes as well as human-driven activities. Natural capital must necessarily differ among soils depending on how they have developed under the five soil-forming processes, but it also can be determined by land use and by the flows of matter and energy that link the global atmosphere, biosphere, and hydrosphere. These latter two determinants have in recent decades begun to exhibit strong variability that exceeds what has been characteristic of them during the past 10 millennia of earth history, thereby raising the apocalyptic issue of whether a deleterious or even catastrophic undermining of the ability of soils to function supportively in ecosystems is in the offing. Resolving this issue will require deeper understanding of how soils perform their provisioning and regulatory functions, how they respond to land-use changes, and how they mediate the global flows of matter and energy.

  4. Radionuclide diffusion in soils. II

    International Nuclear Information System (INIS)

    Barinkova-Cipakova, A.; Szabova, T.

    1986-01-01

    Specimens of different types of soil, namely chernozem, brown soil and illimerized soil were taken in the environs of the nuclear power plant construction site. 0.0285 MBq of 85 Sr in chloride form was added. Solutions of NaNO 3 , KNO 3 and Ca(NO 3 ) 2 of different concentrations and their mixtures were used in studying the effect of salts on strontium sorption. The sorption was studied under steady-state conditions. The eluate samples were measured with an NZQ 201 spectrometer. The 85 Sr sorption by soils in the presence of the individual salts and their mixtures was found to depend on the type of soil. The highest 85 Sr sorption value was found for chernozem while a low radiostrontium sorption was observed for brown soil. The reducing effect was confirmed of elevated salt content in the soil on 85 Sr sorption. The results obtained are discussed in detail. (E.S.) 1 tab., 2 figs., 6 refs

  5. Finnish Society of Soil Sciences

    Science.gov (United States)

    Rankinen, Katri; Hänninen, Pekka; Soinne, Helena; Leppälammi-Kujansuu, Jaana; Salo, Tapio; Pennanen, Taina

    2017-04-01

    In 1998 the organization of the International Union of Soil Sciences (IUSS) was renewed to better support national activities. That was also the new start in the operation of the Finnish Society of Soil Sciences, which became affiliated to the IUSS. The society was originally established in 1971 but it remained relatively inactive. Currently, there are around 200 members in the Finnish Society of Soil Sciences. The members of the executive board cover different fields of soil science from geology to microbiology. Mission statement of the society is to promote the soil sciences and their application in Finland, to act as a forum for creation of better links between soil scientists, interested end users and the public, and to promote distribution and appreciation of general and Finnish research findings in soil science. Every second year the society organizes a national two-day long conference. In 2017 the theme 'circular economy' collected all together 57 presentations. The members of the incoming student division carried responsibility in practical co-ordination committee, acting also as session chairs. In the intervening years the society organizes a weekend excursion to neighboring areas. Lately we have explored the use of biochar in landscaping of Stockholm.

  6. Decomposition of Diethylstilboestrol in Soil

    DEFF Research Database (Denmark)

    Gregers-Hansen, Birte

    1964-01-01

    The rate of decomposition of DES-monoethyl-1-C14 in soil was followed by measurement of C14O2 released. From 1.6 to 16% of the added C14 was recovered as C14O2 during 3 months. After six months as much as 12 to 28 per cent was released as C14O2.Determination of C14 in the soil samples after the e...... not inhibit the CO2 production from the soil.Experiments with γ-sterilized soil indicated that enzymes present in the soil are able to attack DES.......The rate of decomposition of DES-monoethyl-1-C14 in soil was followed by measurement of C14O2 released. From 1.6 to 16% of the added C14 was recovered as C14O2 during 3 months. After six months as much as 12 to 28 per cent was released as C14O2.Determination of C14 in the soil samples after...

  7. Hillslope Soils and Life (Invited)

    Science.gov (United States)

    Amundson, R.; Owen, J. J.; Heimsath, A. M.; Yoo, K.; Dietrich, W. E.

    2013-12-01

    That hillslope processes are impacted by biology has been long understood, but the complexities of the abiotic-biotic processes and their feedbacks are quantitatively emerging with the growing body of pertinent literature. The concept that plants modulate both the disaggregation and transport of soil particles on hillslopes was clearly articulated by G.K. Gilbert. Yet earlier, James Hutton (starting from very different intellectual boundary conditions) argued that soil, which results from the dynamic balance of rock destruction and removal, is a prerequisite for plants - a concept that underscores the need to more deeply examine the feedback of geomorphic processes on terrestrial ecosystems. We compiled the results of recent studies that have been conducted on gentle convex hillslopes across a broad range of rainfall. We found that vegetated landscapes appear to have strong controls on hillslope soil thickness, landscape denudation rates, and soil residence times. The restricted range in residence times - despite large differences in climate - appear in turn to sustain relatively high levels of both nitrogen (N) and phosphorus (P) fertility, suggesting ecological resilience and resistance to non-anthropogenic environmental perturbations. At the most arid end of Earth's climate vegetation disappears, but not all water. The loss of plants shifts soil erosion to abiotic processes, with a corresponding thinning or loss of the soil mantle. This reinforces the hypothesis that a planet without vegetation, but with a hydrologic cycle, would be largely devoid of soil-mantled hillslopes and would be driven toward hillslope morphologies that differ from the familiar convex-up forms of biotic landscapes. While our synthesis of the effects of vegetation on soil production and soil thickness provides a quantitative view of the suggestions of Gilbert, it also identifies that vegetation itself responds to the geomorphic processes, as believed by Hutton. There is a complex

  8. Hydroxyatrazine in soils and sediments

    Science.gov (United States)

    Lerch, R.N.; Thurman, E.M.; Blanchard, P.E.

    1999-01-01

    Hydroxyatrazine (HA) is the major metabolite of atrazine in most surface soils. Knowledge of HA sorption to soils, and its pattern of stream water contamination suggest that it is persistent in the environment. Soils with different atrazine use histories were collected from four sites, and sediments were collected from an agricultural watershed. Samples were exhaustively extracted with a mixed-mode extractant, and HA was quantitated using high performance liquid chromatography with UV detection. Atrazine, deethylatrazine (DEA), and deisopropylatrazine (DIA) were also measured in all samples. Concentrations of HA were considerably greater than concentrations of atrazine, DEA, and DIA in all soils and sediments studied. Soil concentrations of HA ranged from 14 to 640 ??g/kg with a median concentration of 84 ??g/kg. Sediment concentrations of HA ranged from 11 to 96 ??g/kg, with a median concentration of 14 ??g/kg. Correlations of HA and atrazine concentrations to soil properties indicated that HA levels in soils were controlled by sorption of atrazine. Because atrazine hydrolysis is known to be enhanced by sorption and pH extremes, soils with high organic matter (OM) and clay content and low pH will result in greater atrazine sorption and subsequent hydrolysis. Significant correlation of HA concentrations to OM, pH, and cation exchange capacity of sediments indicated that mixed-mode sorption (i.e., binding by cation exchange and hydrophobic interactions) was the mechanism controlling HA levels in sediment. The presence of HA in soils and stream sediments at the levels observed support existing hypotheses regarding its transport in surface runoff. These results also indicated that persistence of HA in terrestrial and aquatic ecosystems is an additional risk factor associated with atrazine usage.

  9. Water and temperature stresses impact canola (Brassica napus L.) fatty acid, protein and yield over nitrogen and sulfur

    Science.gov (United States)

    Interactive effects of weather and soil nutrient status often control crop productivity. An experiment was conducted to determine effects of N and S fertilizer rate, soil water, and atmospheric temperature on canola fatty acid (FA), total oil, protein and grain yield. Nitrogen and S were assessed in...

  10. Uranium soils integrated demonstration: Soil characterization project report

    International Nuclear Information System (INIS)

    Cunnane, J.C.; Gill, V.R.; Lee, S.Y.; Morris, D.E.; Nickelson, M.D.; Perry, D.L.; Tidwell, V.C.

    1993-08-01

    An Integrated Demonstration Program, hosted by the Fernald Environmental Management Project (FEMP), has been established for investigating technologies applicable to the characterization and remediation of soils contaminated with uranium. Critical to the design of relevant treatment technologies is detailed information on the chemical and physical characteristics of the uranium waste-form. To address this need a soil sampling and characterization program was initiated which makes use of a variety of standard analytical techniques coupled with state-of-the-art microscopy and spectroscopy techniques. Sample representativeness is evaluated through the development of conceptual models in an effort to identify and understand those geochemical processes governing the behavior of uranium in FEMP soils. Many of the initial results have significant implications for the design of soil treatment technologies for application at the FEMP

  11. Estimation of soil moisture and its effect on soil thermal ...

    Indian Academy of Sciences (India)

    landscape developed under tropical climate with alternate wet ... nical reasons. The sensing element for soil tem- ... The sensor associated with its signal conditioning, processed ...... formance over Europe, through remote-sensing of vegeta-.

  12. SoilEffects - start characterization of the experimental soil

    DEFF Research Database (Denmark)

    Løes, Anne-Kristin; Johansen, Anders; Pommeresche, Reidun

    -14). The aim of the SoilEffects project is to identify potential risks and benefits for soil fertility when animal manure is anaerobically digested for biogas production. The field experiment was established on Tingvoll research farm in 2011. A biogas plant was built at this farm in 2010, to digest the manure...... in spring, no legumes are grown, and aboveground plant material is removed at harvest. This practice is intended to stress the maintenance of soil organic matter in the arable system, to possibly reveal clearer effects of the experimental treatments. Within each cropping system, five experimental treatments...... by ignition loss was 11.3 % in the grass and 6.6 % in the arable system. Analyzed by total-C measurements, the corresponding SOM values were 11.03 % and 5.97 %. In Norwegian soil, SOM values between 3 and 6 % are regarded as high humus contents (“moldrik”), whereas values between 6 and 12 % are regarded...

  13. Fate of triclocarban during soil aquifer treatment: Soil column studies

    KAUST Repository

    Essandoh, H. M K; Tizaoui, Chedly; Mohamed, Mostafa H A; Amy, Gary L.; Brdjanovic, Damir

    2010-01-01

    There are current concerns about the presence of persistent chemicals in recharge water used in soil aquifer treatment systems. Triclocarban (TCC) has been reported as a persistent, high production volume chemical with the potential to bioaccumulate

  14. Uranium soils integrated demonstration: Soil characterization project report

    Energy Technology Data Exchange (ETDEWEB)

    Cunnane, J.C. [Argonne National Lab., IL (United States); Gill, V.R. [Fernald Environmental Restoration Management Corp., Cincinnati, OH (United States); Lee, S.Y. [Oak Ridge National Lab., TN (United States); Morris, D.E. [Los Alamos National Lab., NM (United States); Nickelson, M.D. [HAZWRAP, Oak Ridge, TN (United States); Perry, D.L. [Lawrence Berkeley Lab., CA (United States); Tidwell, V.C. [Sandia National Labs., Albuquerque, NM (United States)

    1993-08-01

    An Integrated Demonstration Program, hosted by the Fernald Environmental Management Project (FEMP), has been established for investigating technologies applicable to the characterization and remediation of soils contaminated with uranium. Critical to the design of relevant treatment technologies is detailed information on the chemical and physical characteristics of the uranium waste-form. To address this need a soil sampling and characterization program was initiated which makes use of a variety of standard analytical techniques coupled with state-of-the-art microscopy and spectroscopy techniques. Sample representativeness is evaluated through the development of conceptual models in an effort to identify and understand those geochemical processes governing the behavior of uranium in FEMP soils. Many of the initial results have significant implications for the design of soil treatment technologies for application at the FEMP.

  15. Degradation kinetics of ptaquiloside in soil and soil solution

    DEFF Research Database (Denmark)

    Ovesen, Rikke Gleerup; Rasmussen, Lars Holm; Hansen, Hans Christian Bruun

    2008-01-01

    and soil solutions in sandy and clayey soils subjected to high natural PTA loads from bracken stands. Degradation kinetics in moist soil could be fitted with the sum of a fast and a slow first-order reaction; the fast reaction contributed 20 to 50% of the total degradation of PTA. The fast reaction...... was similar in all horizons, with the rate constant k1F ranging between 0.23 and 1.5/h. The slow degradation, with the rate constant k1S ranging between 0.00067 and 0.029/h, was more than twice as fast in topsoils compared to subsoils, which is attributable to higher microbial activity in topsoils....... Experiments with sterile controls confirmed that nonmicrobial degradation processes constituted more than 90% of the fast degradation and 50% of the slow degradation. The lower nonmicrobial degradation rate observed in the clayey compared with the sandy soil is attributed to a stabilizing effect of PTA...

  16. Methods of soil organic carbon determination in Brazilian savannah soils

    Directory of Open Access Journals (Sweden)

    Juliana Hiromi Sato

    2014-08-01

    Full Text Available Several methods exist for determining soil organic carbon, and each one has its own advantages and limitations. Consequently, a comparison of the experimental results obtained when these methods are employed is hampered, causing problems in the comparison of carbon stocks in soils. This study aimed at evaluating the analytical procedures used in the determination of carbon and their relationships with soil mineralogy and texture. Wet combustion methods, including Walkley-Black, Mebius and Colorimetric determination as well as dry combustion methods, such as Elemental and Gravimetric Analysis were used. Quantitative textural and mineralogical (kaolinite, goethite and gibbsite analyses were also carried out. The wet digestion methods underestimated the concentration of organic carbon, while the gravimetric method overestimated. Soil mineralogy interfered with the determination of carbon, with emphasis on the gravimetric method that was greatly influenced by gibbsite.

  17. Radionuclides distribution coefficient of soil to soil-solution

    International Nuclear Information System (INIS)

    1990-06-01

    The present book addresses various issues related with the coefficient of radionuclides distribution between soil and soil solution. It consists of six sections and two appendices. The second section, following an introductory one, describes the definition of the coefficient and a procedures of its calculation. The third section deals with the application of the distribution coefficient to the prediction of movements of radionuclides through soil. Various methods for measuring the coefficient are described in the fourth section. The next section discusses a variety of factors (physical and chemical) that can affect the distribution coefficient. Measurements of the coefficient for different types of oils are listed in the sixth section. An appendix is attached to the book to show various models that can be helpful in applying the coefficient of distribution of radionuclides moving from soil into agricultural plants. (N.K.)

  18. Soil Organic Carbon dynamics in agricultural soils of Veneto Region

    Science.gov (United States)

    Bampa, F. B.; Morari, F. M.; Hiederer, R. H.; Toth, G. T.; Giandon, P. G.; Vinci, I. V.; Montanarella, L. M.; Nocita, M.

    2012-04-01

    One of the eight soil threats expressed in the European Commission's Thematic Strategy for Soil Protection (COM (2006)231 final) it's the decline in Soil Organic Matter (SOM). His preservation is recognized as with the objective to ensure that the soils of Europe remain healthy and capable of supporting human activities and ecosystems. One of the key goals of the strategy is to maintain and improve Soil Organic Carbon (SOC) levels. As climate change is identified as a common element in many of the soil threats, the European Commission (EC) intends to assess the actual contribution of the soil protection to climate change mitigation and the effects of climate change on the possible depletion of SOM. A substantial proportion of European land is occupied by agriculture, and consequently plays a crucial role in maintaining natural resources. Organic carbon preservation and sequestration in the EU's agricultural soils could have some potential to mitigate the effects of climate change, particularly linked to preventing certain land use changes and maintaining SOC stocks. The objective of this study is to assess the SOC dynamics in agricultural soils (cropland and grassland) at regional scale, focusing on changes due to land use. A sub-objective would be the evaluation of the most used land management practices and their effect on SOC content. This assessment aims to determine the geographical distribution of the potential GHG mitigation options, focusing on hot spots in the EU, where mitigation actions would be particularly efficient and is linked with the on-going work in the JRC SOIL Action. The pilot area is Veneto Region. The data available are coming from different sources, timing and involve different variables as: soil texture, climate, soil disturbance, managements and nutrients. The first source of data is the LUCAS project (Land Use/Land Cover Area Frame statistical Survey). Started in 2001, the LUCAS project aims to monitor changes in land cover/use and

  19. Predicting hydrocarbon release from soil

    International Nuclear Information System (INIS)

    Poppendieck, D.; Loehr, R.C.

    2002-01-01

    'Full text:' The remediation of hazardous chemicals from soils can be a lengthy and costly process. As a result, recent regulatory initiatives have focused on risk-based corrective action (RBCA) approaches. Such approaches attempt to identify the amount of chemical that can be left at a site with contaminated soil and still be protective of human health and the environment. For hydrocarbons in soils to pose risk to human heath and the environment, the hydrocarbons must be released from the soil and accessible to microorganisms, earthworms, or other higher level organisms. The sorption of hydrocarbons to soil can reduce the availability of the hydrocarbon to receptors. Typically in soils and sediments, there is an initial fast release of a hydrocarbon from the soil to the aqueous phase followed by a slower release of the remaining hydrocarbon to the aqueous phase. The rate and extent of slow release can influence aqueous hydrocarbon concentrations and the fate and transport of hydrocarbons in the subsurface. Once the fast fraction of the chemical has been removed from the soil, the remaining fraction of a chemical may desorb at a rate that natural mechanisms can attenuate the released hydrocarbon. Hence, active remediation may be needed only until the fast fraction has been removed. However, the fast fraction is a soil and chemical specific parameter. This presentation will present a tier I type protocol that has been developed to quickly estimate the fraction of hydrocarbons that are readily released from the soil matrix to the aqueous phase. Previous research in our laboratory and elsewhere has used long-term desorption (four months) studies to determine the readily released fraction. This research shows that a single short-term (less than two weeks) batch extraction procedure provides a good estimate of the fast released fraction derived from long-term experiments. This procedure can be used as a tool to rapidly evaluate the release and bioavailability of

  20. The Protein Model Portal

    OpenAIRE

    Arnold, Konstantin; Kiefer, Florian; Kopp, J?rgen; Battey, James N. D.; Podvinec, Michael; Westbrook, John D.; Berman, Helen M.; Bordoli, Lorenza; Schwede, Torsten

    2008-01-01

    Structural Genomics has been successful in determining the structures of many unique proteins in a high throughput manner. Still, the number of known protein sequences is much larger than the number of experimentally solved protein structures. Homology (or comparative) modeling methods make use of experimental protein structures to build models for evolutionary related proteins. Thereby, experimental structure determination efforts and homology modeling complement each other in the exploratio...