WorldWideScience

Sample records for giant panda conservation

  1. Should the Endangered Status of the Giant Panda Really Be Reduced? The Case of Giant Panda Conservation in Sichuan, China.

    Science.gov (United States)

    Ma, Ben; Lei, Shuo; Qing, Qin; Wen, Yali

    2018-05-03

    The International Union for Conservation of Nature (IUCN) reduced the threat status of the giant panda from “endangered” to “vulnerable” in September 2016. In this study, we analyzed current practices for giant panda conservation at regional and local environmental scales, based on recent reports of giant panda protection efforts in Sichuan Province, China, combined with the survey results from 927 households within and adjacent to the giant panda reserves in this area. The results showed that household attitudes were very positive regarding giant panda protection efforts. Over the last 10 years, farmers’ dependence on the natural resources provided by giant panda reserves significantly decreased. However, socio-economic development increased resource consumption, and led to climate change, habitat fragmentation, environmental pollution, and other issues that placed increased pressure on giant panda populations. This difference between local and regional scales must be considered when evaluating the IUCN status of giant pandas. While the status of this species has improved in the short-term due to positive local attitudes, large-scale socio-economic development pressure could have long-term negative impacts. Consequently, the IUCN assessment leading to the classification of giant panda as “vulnerable” instead of “endangered”, should not affect its conservation intensity and effort, as such actions could negatively impact population recovery efforts, leading to the extinction of this charismatic species.

  2. Should the Endangered Status of the Giant Panda Really Be Reduced? The Case of Giant Panda Conservation in Sichuan, China

    Directory of Open Access Journals (Sweden)

    Ben Ma

    2018-05-01

    Full Text Available The International Union for Conservation of Nature (IUCN reduced the threat status of the giant panda from “endangered” to “vulnerable” in September 2016. In this study, we analyzed current practices for giant panda conservation at regional and local environmental scales, based on recent reports of giant panda protection efforts in Sichuan Province, China, combined with the survey results from 927 households within and adjacent to the giant panda reserves in this area. The results showed that household attitudes were very positive regarding giant panda protection efforts. Over the last 10 years, farmers’ dependence on the natural resources provided by giant panda reserves significantly decreased. However, socio-economic development increased resource consumption, and led to climate change, habitat fragmentation, environmental pollution, and other issues that placed increased pressure on giant panda populations. This difference between local and regional scales must be considered when evaluating the IUCN status of giant pandas. While the status of this species has improved in the short-term due to positive local attitudes, large-scale socio-economic development pressure could have long-term negative impacts. Consequently, the IUCN assessment leading to the classification of giant panda as “vulnerable” instead of “endangered”, should not affect its conservation intensity and effort, as such actions could negatively impact population recovery efforts, leading to the extinction of this charismatic species.

  3. Metabolic rates of giant pandas inform conservation strategies

    Science.gov (United States)

    Fei, Yuxiang; Hou, Rong; Spotila, James R.; Paladino, Frank V.; Qi, Dunwu; Zhang, Zhihe

    2016-01-01

    The giant panda is an icon of conservation and survived a large-scale bamboo die off in the 1980s in China. Captive breeding programs have produced a large population in zoos and efforts continue to reintroduce those animals into the wild. However, we lack sufficient knowledge of their physiological ecology to determine requirements for survival now and in the face of climate change. We measured resting and active metabolic rates of giant pandas in order to determine if current bamboo resources were sufficient for adding additional animals to populations in natural reserves. Resting metabolic rates were somewhat below average for a panda sized mammal and active metabolic rates were in the normal range. Pandas do not have exceptionally low metabolic rates. Nevertheless, there is enough bamboo in natural reserves to support both natural populations and large numbers of reintroduced pandas. Bamboo will not be the limiting factor in successful reintroduction. PMID:27264109

  4. Metabolic rates of giant pandas inform conservation strategies

    Science.gov (United States)

    Fei, Yuxiang; Hou, Rong; Spotila, James R.; Paladino, Frank V.; Qi, Dunwu; Zhang, Zhihe

    2016-06-01

    The giant panda is an icon of conservation and survived a large-scale bamboo die off in the 1980s in China. Captive breeding programs have produced a large population in zoos and efforts continue to reintroduce those animals into the wild. However, we lack sufficient knowledge of their physiological ecology to determine requirements for survival now and in the face of climate change. We measured resting and active metabolic rates of giant pandas in order to determine if current bamboo resources were sufficient for adding additional animals to populations in natural reserves. Resting metabolic rates were somewhat below average for a panda sized mammal and active metabolic rates were in the normal range. Pandas do not have exceptionally low metabolic rates. Nevertheless, there is enough bamboo in natural reserves to support both natural populations and large numbers of reintroduced pandas. Bamboo will not be the limiting factor in successful reintroduction.

  5. The Lushan earthquake and the giant panda: impacts and conservation.

    Science.gov (United States)

    Zhang, Zejun; Yuan, Shibin; Qi, Dunwu; Zhang, Mingchun

    2014-06-01

    Earthquakes not only result in a great loss of human life and property, but also have profound effects on the Earth's biodiversity. The Lushan earthquake occurred on 20 Apr 2013, with a magnitude of 7.0 and an intensity of 9.0 degrees. A distance of 17.0 km from its epicenter to the nearest distribution site of giant pandas recorded in the Third National Survey was determined. Making use of research on the Wenchuan earthquake (with a magnitude of 8.0), which occurred approximately 5 years ago, we briefly analyze the impacts of the Lushan earthquake on giant pandas and their habitat. An earthquake may interrupt ongoing behaviors of giant pandas and may also cause injury or death. In addition, an earthquake can damage conservation facilities for pandas, and result in further habitat fragmentation and degradation. However, from a historical point of view, the impacts of human activities on giant pandas and their habitat may, in fact, far outweigh those of natural disasters such as earthquakes. Measures taken to promote habitat restoration and conservation network reconstruction in earthquake-affected areas should be based on requirements of giant pandas, not those of humans. © 2013 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and Wiley Publishing Asia Pty Ltd.

  6. Serosurvey of ex situ giant pandas (Ailuropoda melanoleuca) and red pandas (Ailurus fulgens) in China with implications for species conservation.

    Science.gov (United States)

    Loeffler, I Kati; Howard, JoGayle; Montali, Richard J; Hayek, Lee-Ann; Dubovi, Edward; Zhang, Zhihe; Yan, Qigui; Guo, Wanzhu; Wildt, David E

    2007-12-01

    Conservation strategies for the giant panda (Ailuropoda melanoleuca) include the development of a self-sustaining ex situ population. This study examined the potential significance of infectious pathogens in giant pandas ex situ. Serologic antibody titers against canine distemper virus (CDV), canine parvovirus (CPV), canine adenovirus (CAV), canine coronavirus (CCV), canine herpesvirus, canine parainfluenza virus (CPIV), Toxoplasma gondii, Neospora caninum, and Leptospira interrogans were measured in 44 samples taken from 19 giant pandas between 1998 and 2003 at the Chengdu Research Base of Giant Panda Breeding in Sichuan, China. Seroassays also included samples obtained in 2003 from eight red pandas (Ailurus fulgens) housed at the same institution. All individuals had been vaccinated with a Chinese canine vaccine that included modified live CDV, CPV, CAV, CCV, and CPIV. Positive antibody titers were found only against CDV, CPV, and T. gondii. Sera were negative for antibodies against the other six pathogens. Results indicate that the quality of the vaccine may not be reliable and that it should not be considered protective or safe in giant pandas and red pandas. Positive antibody titers against T. gondii were found in seven of the 19 giant pandas. The clinical, subclinical, or epidemiologic significance of infection with these pathogens via natural exposure or from modified live vaccines in giant pandas is unknown. Research in this area is imperative to sustaining a viable population of giant pandas and other endangered species.

  7. from the Giant Panda

    African Journals Online (AJOL)

    STORAGESEVER

    2009-06-03

    Jun 3, 2009 ... 1College of Life Science, China West Normal University, 44# Yuying Road, 637002, Nanchong, China. 2Zhan Jiang educational ... in Escherichia coli and the RPS28 protein fusioned with the N-terminally GST -tagged protein gave rise ... long Conservation Center of the Giant Panda, Sichuan, China. The.

  8. Parasites of the Giant Panda: A Risk Factor in the Conservation of a Species.

    Science.gov (United States)

    Wang, Tao; Xie, Yue; Zheng, Youle; Wang, Chengdong; Li, Desheng; Koehler, Anson V; Gasser, Robin B

    2018-01-01

    The giant panda, with an estimated population size of 2239 in the world (in 2015), is a global symbol of wildlife conservation that is threatened by habitat loss, poor reproduction and limited resistance to some infectious diseases. Of these factors, some diseases caused by parasites are considered as the foremost threat to its conservation. However, there is surprisingly little published information on the parasites of the giant panda, most of which has been disseminated in the Chinese literature. Herein, we review all peer-reviewed publications (in English or Chinese language) and governmental documents for information on parasites of the giant pandas, with an emphasis on the intestinal nematode Baylisascaris schroederi (McIntosh, 1939) as it dominates published literature. The purpose of this chapter is to: (i) review the parasites recorded in the giant panda and describe what is known about their biology; (ii) discuss key aspects of the pathogenesis, diagnosis, treatment and control of key parasites that are reported to cause clinical problems and (iii) conclude by making some suggestions for future research. This chapter shows that we are only just 'scratching the surface' when it comes to parasites and parasitological research of the giant panda. Clearly, there needs to be a concerted research effort to support the conservation of this iconic species. © 2018 Elsevier Ltd All rights reserved.

  9. Hopes and challenges for giant panda conservation under climate change in the Qinling Mountains of China.

    Science.gov (United States)

    Gong, Minghao; Guan, Tianpei; Hou, Meng; Liu, Gang; Zhou, Tianyuan

    2017-01-01

    One way that climate change will impact animal distributions is by altering habitat suitability and habitat fragmentation. Understanding the impacts of climate change on currently threatened species is of immediate importance because complex conservation planning will be required. Here, we mapped changes to the distribution, suitability, and fragmentation of giant panda habitat under climate change and quantified the direction and elevation of habitat shift and fragmentation patterns. These data were used to develop a series of new conservation strategies for the giant panda. Qinling Mountains, Shaanxi, China. Data from the most recent giant panda census, habitat factors, anthropogenic disturbance, climate variables, and climate predictions for the year 2050 (averaged across four general circulation models) were used to project giant panda habitat in Maxent. Differences in habitat patches were compared between now and 2050. While climate change will cause a 9.1% increase in suitable habitat and 9% reduction in subsuitable habitat by 2050, no significant net variation in the proportion of suitable and subsuitable habitat was found. However, a distinct climate change-induced habitat shift of 11 km eastward by 2050 is predicted firstly. Climate change will reduce the fragmentation of suitable habitat at high elevations and exacerbate the fragmentation of subsuitable habitat below 1,900 m above sea level. Reduced fragmentation at higher elevations and worsening fragmentation at lower elevations have the potential to cause overcrowding of giant pandas at higher altitudes, further exacerbating habitat shortage in the central Qinling Mountains. The habitat shift to the east due to climate change may provide new areas for giant pandas but poses severe challenges for future conservation.

  10. Modeling the choice to switch from fuelwood to electricity. Implications for giant panda habitat conservation

    Energy Technology Data Exchange (ETDEWEB)

    An, Li; Liu, Jianguo; Linderman, Marc A. [Department of Fisheries and Wildlife, Michigan State University, 13 Natural Resources Building, 48824 East Lansing, MI (United States); Lupi, Frank [Departments of Agricultural Economics and Fisheries and Wildlife, Michigan State University, 213F Agriculture Hall, 48824 East Lansing, MI (United States); Huang, Jinyan [Wolong Nature Reserve Administration, Wenchuan County, 623002 Sichuan Province (China)

    2002-09-01

    Despite its status as a nature reserve, Wolong Nature Reserve (China) has experienced continued loss of giant panda habitat due to human activities such as fuelwood collection. Electricity, though available throughout Wolong, has not replaced fuelwood as an energy source. We used stated preference data obtained from in-person interviews to estimate a random utility model of the choice of adopting electricity for cooking and heating. Willingness to switch to electricity was explained by demographic and electricity factors (price, voltage, and outage frequency). In addition to price, non-price factors such as voltage and outage frequency significantly affect the demand. Thus, lowering electricity prices and increasing electricity quality would encourage local residents to switch from fuelwood to electricity and should be considered in the mix of policies to promote conservation of panda habitat.

  11. Modeling the choice to switch from fuelwood to electricity. Implications for giant panda habitat conservation

    International Nuclear Information System (INIS)

    An, Li; Liu, Jianguo; Linderman, Marc A.; Lupi, Frank; Huang, Jinyan

    2002-01-01

    Despite its status as a nature reserve, Wolong Nature Reserve (China) has experienced continued loss of giant panda habitat due to human activities such as fuelwood collection. Electricity, though available throughout Wolong, has not replaced fuelwood as an energy source. We used stated preference data obtained from in-person interviews to estimate a random utility model of the choice of adopting electricity for cooking and heating. Willingness to switch to electricity was explained by demographic and electricity factors (price, voltage, and outage frequency). In addition to price, non-price factors such as voltage and outage frequency significantly affect the demand. Thus, lowering electricity prices and increasing electricity quality would encourage local residents to switch from fuelwood to electricity and should be considered in the mix of policies to promote conservation of panda habitat

  12. Quantifying the evidence for co-benefits between species conservation and climate change mitigation in giant panda habitats.

    Science.gov (United States)

    Li, Renqiang; Xu, Ming; Powers, Ryan; Zhao, Fen; Jetz, Walter; Wen, Hui; Sheng, Qingkai

    2017-10-05

    Conservationists strive for practical, cost-effective management solutions to forest-based species conservation and climate change mitigation. However, this is compromised by insufficient information about the effectiveness of protected areas in increasing carbon storage, and the co-benefits of species and carbon conservation remain poorly understood. Here, we present the first rigorous quantitative assessment of the roles of giant panda nature reserves (NRs) in carbon sequestration, and explore the co-benefits of habitat conservation and climate change mitigation. Results show that more than 90% of the studied panda NRs are effective in increasing carbon storage, with the mean biomass carbon density of the whole NRs exhibiting a 4.2% higher growth rate compared with lands not declared as NRs over the period 1988-2012, while this effectiveness in carbon storage masks important patterns of spatial heterogeneity across the giant panda habitats. Moreover, the significant associations have been identified between biomass carbon density and panda's habitat suitability in ~85% NRs and at the NR level. These findings suggest that the planning for carbon and species conservation co-benefits would enhance the greatest return on limited conservation investments, which is a critical need for the giant panda after its conservation status has been downgraded from "endangered" to "vulnerable".

  13. Patterns of genetic differentiation at MHC class I genes and microsatellites identify conservation units in the giant panda.

    Science.gov (United States)

    Zhu, Ying; Wan, Qiu-Hong; Yu, Bin; Ge, Yun-Fa; Fang, Sheng-Guo

    2013-10-22

    Evaluating patterns of genetic variation is important to identify conservation units (i.e., evolutionarily significant units [ESUs], management units [MUs], and adaptive units [AUs]) in endangered species. While neutral markers could be used to infer population history, their application in the estimation of adaptive variation is limited. The capacity to adapt to various environments is vital for the long-term survival of endangered species. Hence, analysis of adaptive loci, such as the major histocompatibility complex (MHC) genes, is critical for conservation genetics studies. Here, we investigated 4 classical MHC class I genes (Aime-C, Aime-F, Aime-I, and Aime-L) and 8 microsatellites to infer patterns of genetic variation in the giant panda (Ailuropoda melanoleuca) and to further define conservation units. Overall, we identified 24 haplotypes (9 for Aime-C, 1 for Aime-F, 7 for Aime-I, and 7 for Aime-L) from 218 individuals obtained from 6 populations of giant panda. We found that the Xiaoxiangling population had the highest genetic variation at microsatellites among the 6 giant panda populations and higher genetic variation at Aime-MHC class I genes than other larger populations (Qinling, Qionglai, and Minshan populations). Differentiation index (FST)-based phylogenetic and Bayesian clustering analyses for Aime-MHC-I and microsatellite loci both supported that most populations were highly differentiated. The Qinling population was the most genetically differentiated. The giant panda showed a relatively higher level of genetic diversity at MHC class I genes compared with endangered felids. Using all of the loci, we found that the 6 giant panda populations fell into 2 ESUs: Qinling and non-Qinling populations. We defined 3 MUs based on microsatellites: Qinling, Minshan-Qionglai, and Daxiangling-Xiaoxiangling-Liangshan. We also recommended 3 possible AUs based on MHC loci: Qinling, Minshan-Qionglai, and Daxiangling-Xiaoxiangling-Liangshan. Furthermore, we recommend

  14. The WTP for property rights for the Giant Panda: can a charismatic species be an instrument for conservation of natural habitat?

    OpenAIRE

    Kontoleon, A.; Swanson, T.

    2002-01-01

    The paper presents the results from a stated preference study to address issues concerning the potential for using flag-ship species, such as the Giant Panda, to purchase the property rights for the conservation of natural habitat. The study finds, first, that there is clear WTP for acquiring the property rights for panda habitat. The nature of this demand is found both convincing and logically coherent in that it is an increasing function of land (at a diminishing rate). Secondly, the stu...

  15. Mapping and modelling the habitat of giant pandas in Foping Nature Reserve, China

    OpenAIRE

    Liu, X.

    2001-01-01

    The fact that only about 1000 giant pandas and 29500 km2 of panda habitat are left in the west part of China makes it an urgent issue to save this endangered animal species and protect its habitat. For effective conservation of the giant panda and its habitat, a thorough evaluation of panda habitat and panda-habitat relationship based on each individual panda nature reserve is necessary and important. Mapping has been an effective approach for wildlife habitat evaluation and monitoring. There...

  16. Mapping and modelling the habitat of giant pandas in Foping Nature Reserve, China

    NARCIS (Netherlands)

    Liu, X.

    2001-01-01

    The fact that only about 1000 giant pandas and 29500 km2 of panda habitat are left in the west part of China makes it an urgent issue to save this endangered animal species and protect its habitat. For effective conservation of the giant panda and its habitat, a thorough evaluation of panda habitat

  17. Role of New Nature Reserve in Assisting Endangered Species Conservation - Case Study of Giant Pandas in the Northern Qionglai Mountains, China.

    Directory of Open Access Journals (Sweden)

    Tian-Pei Guan

    Full Text Available The creation of nature reserves is the most direct way to save endangered species populations and their habitat. Development of the giant panda (Ailuropoda melanoleuca nature reserve network in China was initiated in the 1960s, though the effort to create new reserves boomed considerably after the year 2000. Given this rapid development of protected areas in panda habitats, and the potential conflicting interests between conservation administrations and local economic development, it is essential to assess the role of new nature reserves in the overall giant panda conservation effort and reserve network. We utilized data from national giant panda surveys conducted in 2000 and 2012 to compare the size, spatial use, and distribution of panda populations, as well as the habitat suitability and connectivity in the Northern Qionglai Mountains between the two survey years. Our results show that although the total giant panda population in the study area did not change remarkably, local changes did occur. Most notably, the population in Wolong Nature Reserve declined by 27.3% (N = 39 and the population in Caopo Nature Reserve increased by 71.4% (N = 29 over the 12-year study period. We also found habitat suitability and availability decreased in both Wolong (12.4% and Caopo (7.4%, but that the relative density of giant pandas declined (19.2% and increased (84.6% at each site, respectively. The distance between centers of high IUA were more distant in 2012 (14.1±1.9km than that in 2000 (6.1±0.9km; t = -7.4, df = 5, p = 0.001, showing a scattered spatial pattern. Habitat availability decreased by 42% within the corridor between the two reserves, however panda occurrences in the corridor increased 24.6%. Compared to the total number of encounters, the proportion of the corridor increased 45.76%. Our results show the importance and success of the newly established Caopo to the conservation of giant pandas, and how crucial it is to identify and repair

  18. Fatal canine distemper virus infection of giant pandas in China.

    Science.gov (United States)

    Feng, Na; Yu, Yicong; Wang, Tiecheng; Wilker, Peter; Wang, Jianzhong; Li, Yuanguo; Sun, Zhe; Gao, Yuwei; Xia, Xianzhu

    2016-06-16

    We report an outbreak of canine distemper virus (CDV) infection among endangered giant pandas (Ailuropoda melanoleuca). Five of six CDV infected giant pandas died. The surviving giant panda was previously vaccinated against CDV. Genomic sequencing of CDV isolated from one of the infected pandas (giant panda/SX/2014) suggests it belongs to the Asia-1 cluster. The hemagglutinin protein of the isolated virus and virus sequenced from lung samples originating from deceased giant pandas all possessed the substitutions V26M, T213A, K281R, S300N, P340Q, and Y549H. The presence of the Y549H substitution is notable as it is found at the signaling lymphocytic activation molecule (SLAM) receptor-binding site and has been implicated in the emergence of highly pathogenic CDV and host switching. These findings demonstrate that giant pandas are susceptible to CDV and suggest that surveillance and vaccination among all captive giant pandas are warranted to support conservation efforts for this endangered species.

  19. Fatal canine distemper virus infection of giant pandas in China

    Science.gov (United States)

    Feng, Na; Yu, Yicong; Wang, Tiecheng; Wilker, Peter; Wang, Jianzhong; Li, Yuanguo; Sun, Zhe; Gao, Yuwei; Xia, Xianzhu

    2016-01-01

    We report an outbreak of canine distemper virus (CDV) infection among endangered giant pandas (Ailuropoda melanoleuca). Five of six CDV infected giant pandas died. The surviving giant panda was previously vaccinated against CDV. Genomic sequencing of CDV isolated from one of the infected pandas (giant panda/SX/2014) suggests it belongs to the Asia-1 cluster. The hemagglutinin protein of the isolated virus and virus sequenced from lung samples originating from deceased giant pandas all possessed the substitutions V26M, T213A, K281R, S300N, P340Q, and Y549H. The presence of the Y549H substitution is notable as it is found at the signaling lymphocytic activation molecule (SLAM) receptor-binding site and has been implicated in the emergence of highly pathogenic CDV and host switching. These findings demonstrate that giant pandas are susceptible to CDV and suggest that surveillance and vaccination among all captive giant pandas are warranted to support conservation efforts for this endangered species. PMID:27310722

  20. Role of nature reserves in giant panda protection.

    Science.gov (United States)

    Kang, Dongwei; Li, Junqing

    2018-02-01

    Giant panda (Ailuropoda melanoleuca) is a flagship species in nature conservation of the world; to protect this species, 67 nature reserves have been established in China. To evaluate the protection effect of giant panda nature reserves, we analyzed the variation of giant panda number and habitat area of 23 giant panda nature reserves of Sichuan province based on the national survey data released by State Forestry Administration and Sichuan Forestry Department. Results showed that from the third national survey to the fourth, giant panda number and habitat area of 23 giant panda nature reserves of Sichuan province failed to realize the significant increase. Furthermore, we found that the total population growth rate of 23 nature reserves in the last 12 years was lower than those of the province total of Sichuan and the national total of China, and the total habitat area of the 23 nature reserves was decreasing in the last 12 years, but the province total and national total were all increasing. We propose that giant panda protection should pay more attention to how to improve the protective effects of nature reserves.

  1. Resting site use of giant pandas in Wanglang Nature Reserve.

    Science.gov (United States)

    Kang, Dongwei; Wang, Xiaorong; Li, Junqing

    2017-10-23

    Little is known about the resting sites used by the giant panda (Ailuropoda melanoleuca), which restricts our understanding of their resting habits and limits conservation efforts. To enhance our understanding of resting site requirements and factors affecting the resting time of giant pandas, we investigated the characteristics of resting sites in the Wanglang Nature Reserve, Sichuan Province, China. The results indicated that the resting sites of giant pandas were characterised by a mean slope of 21°, mean nearest tree size of 53.75 cm, mean nearest shrub size of 2.82 cm, and mean nearest bamboo number of 56. We found that the resting sites were closer to bamboo than to trees and shrubs, suggesting that the resting site use of giant pandas is closely related to the presence of bamboo. Considering that giant pandas typically rest near a large-sized tree, protection of large trees in the forests is of considerable importance for the conservation of this species. Furthermore, slope was found to be an important factor affecting the resting time of giant pandas, as they tended to rest for a relatively longer time in sites with a smaller degree of slope.

  2. Habitat Use and Selection by Giant Pandas

    Science.gov (United States)

    Hull, Vanessa; Zhang, Jindong; Huang, Jinyan; Zhou, Shiqiang; Viña, Andrés; Shortridge, Ashton; Li, Rengui; Liu, Dian; Xu, Weihua; Ouyang, Zhiyun; Zhang, Hemin; Liu, Jianguo

    2016-01-01

    Animals make choices about where to spend their time in complex and dynamic landscapes, choices that reveal information about their biology that in turn can be used to guide their conservation. Using GPS collars, we conducted a novel individual-based analysis of habitat use and selection by the elusive and endangered giant pandas (Ailuropoda melanoleuca). We constructed spatial autoregressive resource utilization functions (RUF) to model the relationship between the pandas' utilization distributions and various habitat characteristics over a continuous space across seasons. Results reveal several new insights, including use of a broader range of habitat characteristics than previously understood for the species, particularly steep slopes and non-forest areas. We also used compositional analysis to analyze habitat selection (use with respect to availability of habitat types) at two selection levels. Pandas selected against low terrain position and against the highest clumped forest at the at-home range level, but no significant factors were identified at the within-home range level. Our results have implications for modeling and managing the habitat of this endangered species by illustrating how individual pandas relate to habitat and make choices that differ from assumptions made in broad scale models. Our study also highlights the value of using a spatial autoregressive RUF approach on animal species for which a complete picture of individual-level habitat use and selection across space is otherwise lacking. PMID:27627805

  3. Habitat Use and Selection by Giant Pandas.

    Directory of Open Access Journals (Sweden)

    Vanessa Hull

    Full Text Available Animals make choices about where to spend their time in complex and dynamic landscapes, choices that reveal information about their biology that in turn can be used to guide their conservation. Using GPS collars, we conducted a novel individual-based analysis of habitat use and selection by the elusive and endangered giant pandas (Ailuropoda melanoleuca. We constructed spatial autoregressive resource utilization functions (RUF to model the relationship between the pandas' utilization distributions and various habitat characteristics over a continuous space across seasons. Results reveal several new insights, including use of a broader range of habitat characteristics than previously understood for the species, particularly steep slopes and non-forest areas. We also used compositional analysis to analyze habitat selection (use with respect to availability of habitat types at two selection levels. Pandas selected against low terrain position and against the highest clumped forest at the at-home range level, but no significant factors were identified at the within-home range level. Our results have implications for modeling and managing the habitat of this endangered species by illustrating how individual pandas relate to habitat and make choices that differ from assumptions made in broad scale models. Our study also highlights the value of using a spatial autoregressive RUF approach on animal species for which a complete picture of individual-level habitat use and selection across space is otherwise lacking.

  4. Three cases giant panda attack on human at Beijing Zoo.

    Science.gov (United States)

    Zhang, Peixun; Wang, Tianbing; Xiong, Jian; Xue, Feng; Xu, Hailin; Chen, Jianhai; Zhang, Dianying; Fu, Zhongguo; Jiang, Baoguo

    2014-01-01

    Panda is regarded as Chinese national treasure. Most people always thought they were cute and just ate bamboo and had never imagined a panda could be vicious. Giant panda attacks on human are rare. There, we present three cases of giant panda attacks on humans at the Panda House at Beijing Zoo from September 2006 to June 2009 to warn people of the giant panda's potentially dangerous behavior.

  5. Three cases giant panda attack on human at Beijing Zoo

    OpenAIRE

    Zhang, Peixun; Wang, Tianbing; Xiong, Jian; Xue, Feng; Xu, Hailin; Chen, Jianhai; Zhang, Dianying; Fu, Zhongguo; Jiang, Baoguo

    2014-01-01

    Panda is regarded as Chinese national treasure. Most people always thought they were cute and just ate bamboo and had never imagined a panda could be vicious. Giant panda attacks on human are rare. There, we present three cases of giant panda attacks on humans at the Panda House at Beijing Zoo from September 2006 to June 2009 to warn people of the giant panda’s potentially dangerous behavior.

  6. Factors affecting genotyping success in giant panda fecal samples.

    Science.gov (United States)

    Zhu, Ying; Liu, Hong-Yi; Yang, Hai-Qiong; Li, Yu-Dong; Zhang, He-Min

    2017-01-01

    Fecal samples play an important role in giant panda conservation studies. Optimal preservation conditions and choice of microsatellites for giant panda fecal samples have not been established. In this study, we evaluated the effect of four factors (namely, storage type (ethanol (EtOH), EtOH -20 °C, 2-step storage medium, DMSO/EDTA/Tris/salt buffer (DETs) and frozen at -20 °C), storage time (one, three and six months), fragment length, and repeat motif of microsatellite loci) on the success rate of microsatellite amplification, allelic dropout (ADO) and false allele (FA) rates from giant panda fecal samples. Amplification success and ADO rates differed between the storage types. Freezing was inferior to the other four storage methods based on the lowest average amplification success and the highest ADO rates ( P panda fecal preservation in microsatellite studies, and EtOH and the 2-step storage medium should be chosen on priority for long-term storage. We recommend candidate microsatellite loci with longer repeat motif to ensure greater genotyping success for giant panda fecal studies.

  7. Evaluating landscape options for corridor restoration between giant panda reserves.

    Directory of Open Access Journals (Sweden)

    Fang Wang

    Full Text Available The establishment of corridors can offset the negative effects of habitat fragmentation by connecting isolated habitat patches. However, the practical value of corridor planning is minimal if corridor identification is not based on reliable quantitative information about species-environment relationships. An example of this need for quantitative information is planning for giant panda conservation. Although the species has been the focus of intense conservation efforts for decades, most corridor projects remain hypothetical due to the lack of reliable quantitative researches at an appropriate spatial scale. In this paper, we evaluated a framework for giant panda forest corridor planning. We linked our field survey data with satellite imagery, and conducted species occupancy modelling to examine the habitat use of giant panda within the potential corridor area. We then conducted least-cost and circuit models to identify potential paths of dispersal across the landscape, and compared the predicted cost under current conditions and alternative conservation management options considered during corridor planning. We found that due to giant panda's association with areas of low elevation and flat terrain, human infrastructures in the same area have resulted in corridor fragmentation. We then identified areas with high potential to function as movement corridors, and our analysis of alternative conservation scenarios showed that both forest/bamboo restoration and automobile tunnel construction would significantly improve the effectiveness of corridor, while residence relocation would not significantly improve corridor effectiveness in comparison with the current condition. The framework has general value in any conservation activities that anticipate improving habitat connectivity in human modified landscapes. Specifically, our study suggested that, in this landscape, automobile tunnels are the best means to remove current barriers to giant panda

  8. Observing giant panda habitat and forage abundance from space

    NARCIS (Netherlands)

    Wang, T.

    2009-01-01

    Giant pandas are obligate bamboo grazers. The bamboos favoured by giant
    pandas are typical forest understorey plants. Therefore, the availability and
    abundance of understorey bamboo is a key factor in determining the quantity
    and quality of giant panda food resources. However,

  9. Giant Panda habitat selection in the Foping Nature Reserve, China

    NARCIS (Netherlands)

    Liu, X.; Toxopeus, A.G.; Skidmore, A.K.; Shao, X.; Dang, D.; Wang, T.; Prins, H.H.T.

    2005-01-01

    Little is known about habitat selection of the giant panda (Ailuropoda melanoleuca), especially about the relationship between giant panda presence and bamboo and tree structures. We presented data on giant panda habitat use and selection in Foping Nature Reserve (NR), China. We used 1,066

  10. Assessing vulnerability of giant pandas to climate change in the Qinling Mountains of China.

    Science.gov (United States)

    Li, Jia; Liu, Fang; Xue, Yadong; Zhang, Yu; Li, Diqiang

    2017-06-01

    Climate change might pose an additional threat to the already vulnerable giant panda ( Ailuropoda melanoleuca ). Effective conservation efforts require projections of vulnerability of the giant panda in facing climate change and proactive strategies to reduce emerging climate-related threats. We used the maximum entropy model to assess the vulnerability of giant panda to climate change in the Qinling Mountains of China. The results of modeling included the following findings: (1) the area of suitable habitat for giant pandas was projected to decrease by 281 km 2 from climate change by the 2050s; (2) the mean elevation of suitable habitat of giant panda was predicted to shift 30 m higher due to climate change over this period; (3) the network of nature reserves protect 61.73% of current suitable habitat for the species, and 59.23% of future suitable habitat; (4) current suitable habitat mainly located in Chenggu, Taibai, and Yangxian counties (with a total area of 987 km 2 ) was predicted to be vulnerable. Assessing the vulnerability of giant panda provided adaptive strategies for conservation programs and national park construction. We proposed adaptation strategies to ameliorate the predicted impacts of climate change on giant panda, including establishing and adjusting reserves, establishing habitat corridors, improving adaptive capacity to climate change, and strengthening monitoring of giant panda.

  11. Modeling Impacts of Climate Change on Giant Panda Habitat

    Directory of Open Access Journals (Sweden)

    Melissa Songer

    2012-01-01

    Full Text Available Giant pandas (Ailuropoda melanoleuca are one of the most widely recognized endangered species globally. Habitat loss and fragmentation are the main threats, and climate change could significantly impact giant panda survival. We integrated giant panda habitat information with general climate models (GCMs to predict future geographic distribution and fragmentation of giant panda habitat. Results support a major general prediction of climate change—a shift of habitats towards higher elevation and higher latitudes. Our models predict climate change could reduce giant panda habitat by nearly 60% over 70 years. New areas may become suitable outside the current geographic range but much of these areas is far from the current giant panda range and only 15% fall within the current protected area system. Long-term survival of giant pandas will require the creation of new protected areas that are likely to support suitable habitat even if the climate changes.

  12. Impacts of temperature on giant panda habitat in the north Minshan Mountains.

    Science.gov (United States)

    Liu, Gang; Guan, Tianpei; Dai, Qiang; Li, Huixin; Gong, Minghao

    2016-02-01

    Understanding the impacts of meteorological factors on giant pandas is necessary for future conservation measures in response to global climate change. We integrated temperature data with three main habitat parameters (elevation, vegetation type, and bamboo species) to evaluate the influence of climate change on giant panda habitat in the northern Minshan Mountains using a habitat assessment model. Our study shows that temperature (relative importance = 25.1%) was the second most important variable influencing giant panda habitat excepting the elevation. There was a significant negative correlation between temperature and panda presence (ρ = -0.133, P pandas within the study area was 18-21°C, followed by 15-17°C and 22-24°C. The overall suitability of giant panda habitats will increase by 2.7%, however, it showed a opposite variation patterns between the eastern and northwestern region of the study area. Suitable and subsuitable habitats in the northwestern region of the study area, which is characterized by higher elevation and latitude, will increase by 18007.8 hm(2) (9.8% habitat suitability), while the eastern region will suffer a decrease of 9543.5 hm(2) (7.1% habitat suitability). Our results suggest that increasing areas of suitable giant panda habitat will support future giant panda expansion, and food shortage and insufficient living space will not arise as problems in the northwest Minshan Mountains, which means that giant pandas can adapt to climate change, and therefore may be resilient to climate change. Thus, for the safety and survival of giant pandas in the Baishuijiang Reserve, we propose strengthening the giant panda monitoring program in the west and improving the integrity of habitats to promote population dispersal with adjacent populations in the east.

  13. Factors affecting genotyping success in giant panda fecal samples

    Directory of Open Access Journals (Sweden)

    Ying Zhu

    2017-05-01

    Full Text Available Fecal samples play an important role in giant panda conservation studies. Optimal preservation conditions and choice of microsatellites for giant panda fecal samples have not been established. In this study, we evaluated the effect of four factors (namely, storage type (ethanol (EtOH, EtOH −20 °C, 2-step storage medium, DMSO/EDTA/Tris/salt buffer (DETs and frozen at −20 °C, storage time (one, three and six months, fragment length, and repeat motif of microsatellite loci on the success rate of microsatellite amplification, allelic dropout (ADO and false allele (FA rates from giant panda fecal samples. Amplification success and ADO rates differed between the storage types. Freezing was inferior to the other four storage methods based on the lowest average amplification success and the highest ADO rates (P < 0.05. The highest microsatellite amplification success was obtained from either EtOH or the 2-step storage medium at three storage time points. Storage time had a negative effect on the average amplification of microsatellites and samples stored in EtOH and the 2-step storage medium were more stable than the other three storage types. We only detected the effect of repeat motif on ADO and FA rates. The lower ADO and FA rates were obtained from tri- and tetra-nucleotide loci. We suggest that freezing should not be used for giant panda fecal preservation in microsatellite studies, and EtOH and the 2-step storage medium should be chosen on priority for long-term storage. We recommend candidate microsatellite loci with longer repeat motif to ensure greater genotyping success for giant panda fecal studies.

  14. Establishment and cryopreservation of a giant panda skeletal muscle-derived cell line.

    Science.gov (United States)

    Yu, Fang-Jian; Zeng, Chang-Jun; Zhang, Yan; Wang, Cheng-Dong; Xiong, Tie-Yi; Fang, Sheng-Guo; Zhang, He-Min

    2015-06-01

    The giant panda Ailuropoda melanoleuca is an endangered species and is a symbol for wildlife conservation. Although efforts have been made to protect this rare and endangered species through breeding and conservative biology, the long-term preservation of giant panda genome resources (gametes, tissues, organs, genomic libraries, etc.) is still a practical option. In this study, the giant panda skeletal muscle-derived cell line was successfully established via primary explants culture and cryopreservation techniques. The population doubling time of giant panda skeletal cells was approximately 33.8 h, and this population maintained a high cell viability before and after cryopreservation (95.6% and 90.7%, respectively). The two skeletal muscle-specific genes SMYD1 and MYF6 were expressed and detected by RT-PCR in the giant panda skeletal muscle-derived cell line. Karyotyping analysis revealed that the frequencies of giant panda skeletal muscle cells showing a chromosome number of 2n=42 ranged from 90.6∼94.2%. Thus, the giant panda skeletal muscle-derived cell line provides a vital resource and material platform for further studies and is likely to be useful for the protection of this rare and endangered species.

  15. Habitat assessment for giant pandas in the Qinling Mountain region of China

    Science.gov (United States)

    Feng, Tian-Tian; Van Manen, Frank T.; Zhao, Na-Xun; Li, Ming; Wei, Fu-Wen

    2009-01-01

    Because habitat loss and fragmentation threaten giant pandas (Ailuropoda melanoleuca), habitat protection and restoration are important conservation measures for this endangered species. However, distribution and value of potential habitat to giant pandas on a regional scale are not fully known. Therefore, we identified and ranked giant panda habitat in Foping Nature Reserve, Guanyinshan Nature Reserve, and adjacent areas in the Qinling Mountains of China. We used Mahalanobis distance and 11 digital habitat layers to develop a multivariate habitat signature associated with 247 surveyed giant panda locations, which we then applied to the study region. We identified approximately 128 km2 of giant panda habitat in Foping Nature Reserve (43.6% of the reserve) and 49 km2 in Guanyinshan Nature Reserve (33.6% of the reserve). We defined core habitat areas by incorporating a minimum patch-size criterion (5.5 km2) based on home-range size. Percentage of core habitat area was higher in Foping Nature Reserve (41.8% of the reserve) than Guanyinshan Nature Reserve (26.3% of the reserve). Within the larger analysis region, Foping Nature Reserve contained 32.7% of all core habitat areas we identified, indicating regional importance of the reserve. We observed a negative relationship between distribution of core areas and presence of roads and small villages. Protection of giant panda habitat at lower elevations and improvement of habitat linkages among core habitat areas are important in a regional approach to giant panda conservation.

  16. Functional annotation from the genome sequence of the giant panda

    OpenAIRE

    Huo, Tong; Zhang, Yinjie; Lin, Jianping

    2012-01-01

    The giant panda is one of the most critically endangered species due to the fragmentation and loss of its habitat. Studying the functions of proteins in this animal, especially specific trait-related proteins, is therefore necessary to protect the species. In this work, the functions of these proteins were investigated using the genome sequence of the giant panda. Data on 21,001 proteins and their functions were stored in the Giant Panda Protein Database, in which the proteins were divided in...

  17. Perfluorooctanesulfonate and periluorooctanoate in red panda and giant panda from China.

    Science.gov (United States)

    Dai, Jiayin; Li, Ming; Jin, Yihe; Saito, Norimitsu; Xu, Muqi; Wei, Fuwen

    2006-09-15

    Perfluorooctanesulfonate (PFOS) and perfluorooctanoate (PFOA) are important perfluorochemicals (PFCs) in various applications. Recently, it has been shown that these compounds are widespread in the environment, wildlife, and humans. The giant panda and the red panda belong to the order Carnivora, but are highly specialized as bamboo feeders. Both species are considered rare and endangered. In this study, we report for the first time on levels of PFOS and PFOA in serum of the giant panda and the red panda captured in zoos and animal parks from six provinces in China. PFOS was the predominant compound in all panda samples measured (ranging from 0.80 to 73.80 microg/L for red panda and from 0.76 to 19.00 microg/L for giant panda). The PFOA level ranged from 0.33 to 8.20 microg/L for red panda, and from 0.32 to 1.56 microg/L for giant panda. There was a positive significant correlation between concentrations of PFOS and PFOA in the serum obtained from pandas. No age- or sex- related differences were observed in concentrations of the fluorochemicals in panda sera. Greater concentrations of the fluorochemicals were found for those individuals collected from zoos near urbanized or industrialized areas than for other areas. These data combined with other reported data suggest that there are large differences in distribution of perfluorinated compounds in terrestrial animals.

  18. Metagenomic Study Suggests That the Gut Microbiota of the Giant Panda (Ailuropoda melanoleuca May Not Be Specialized for Fiber Fermentation

    Directory of Open Access Journals (Sweden)

    Wei Guo

    2018-02-01

    Full Text Available Bamboo-eating giant panda (Ailuropoda melanoleuca is an enigmatic species, which possesses a carnivore-like short and simple gastrointestinal tract (GIT. Despite the remarkable studies on giant panda, its diet adaptability status continues to be a matter of debate. To resolve this puzzle, we investigated the functional potential of the giant panda gut microbiome using shotgun metagenomic sequencing of fecal samples. We also compared our data with similar data from other animal species representing herbivores, carnivores, and omnivores from current and earlier studies. We found that the giant panda hosts a bear-like gut microbiota distinct from those of herbivores indicated by the metabolic potential of the microbiome in the gut of giant pandas and other mammals. Furthermore, the relative abundance of genes involved in cellulose- and hemicellulose-digestion, and enrichment of enzymes associated with pathways of amino acid degradation and biosynthetic reactions in giant pandas echoed a carnivore-like microbiome. Most significantly, the enzyme assay of the giant panda's feces indicated the lowest cellulase and xylanase activity among major herbivores, shown by an in-vitro experimental assay of enzyme activity for cellulose and hemicellulose-degradation. All of our results consistently indicate that the giant panda is not specialized to digest cellulose and hemicellulose from its bamboo diet, making the giant panda a good mammalian model to study the unusual link between the gut microbiome and diet. The increased food intake of the giant pandas might be a strategy to compensate for the gut microbiome functions, highlighting a strong need of conservation of the native bamboo forest both in high- and low-altitude ranges to meet the great demand of bamboo diet of giant pandas.

  19. Metagenomic Study Suggests That the Gut Microbiota of the Giant Panda (Ailuropoda melanoleuca) May Not Be Specialized for Fiber Fermentation.

    Science.gov (United States)

    Guo, Wei; Mishra, Sudhanshu; Zhao, Jiangchao; Tang, Jingsi; Zeng, Bo; Kong, Fanli; Ning, Ruihong; Li, Miao; Zhang, Hengzhi; Zeng, Yutian; Tian, Yuanliangzi; Zhong, Yihang; Luo, Hongdi; Liu, Yunhan; Yang, Jiandong; Yang, Mingyao; Zhang, Mingwang; Li, Yan; Ni, Qingyong; Li, Caiwu; Wang, Chengdong; Li, Desheng; Zhang, Hemin; Zuo, Zhili; Li, Ying

    2018-01-01

    Bamboo-eating giant panda ( Ailuropoda melanoleuca ) is an enigmatic species, which possesses a carnivore-like short and simple gastrointestinal tract (GIT). Despite the remarkable studies on giant panda, its diet adaptability status continues to be a matter of debate. To resolve this puzzle, we investigated the functional potential of the giant panda gut microbiome using shotgun metagenomic sequencing of fecal samples. We also compared our data with similar data from other animal species representing herbivores, carnivores, and omnivores from current and earlier studies. We found that the giant panda hosts a bear-like gut microbiota distinct from those of herbivores indicated by the metabolic potential of the microbiome in the gut of giant pandas and other mammals. Furthermore, the relative abundance of genes involved in cellulose- and hemicellulose-digestion, and enrichment of enzymes associated with pathways of amino acid degradation and biosynthetic reactions in giant pandas echoed a carnivore-like microbiome. Most significantly, the enzyme assay of the giant panda's feces indicated the lowest cellulase and xylanase activity among major herbivores, shown by an in-vitro experimental assay of enzyme activity for cellulose and hemicellulose-degradation. All of our results consistently indicate that the giant panda is not specialized to digest cellulose and hemicellulose from its bamboo diet, making the giant panda a good mammalian model to study the unusual link between the gut microbiome and diet. The increased food intake of the giant pandas might be a strategy to compensate for the gut microbiome functions, highlighting a strong need of conservation of the native bamboo forest both in high- and low-altitude ranges to meet the great demand of bamboo diet of giant pandas.

  20. HEMATOLOGY, SERUM BIOCHEMISTRY, AND URINALYSIS VALUES IN THE ADULT GIANT PANDA ( AILUROPODA MELANOLEUCA).

    Science.gov (United States)

    Burrell, Caitlin; Zhang, Hemin; Li, Desheng; Wang, Chengdong; Li, Caiwu; Aitken-Palmer, Copper

    2017-12-01

    The giant panda ( Ailuropoda melanoleuca) is a high-profile threatened species with individuals in captivity worldwide. As a result of advances in captive animal management and veterinary medicine, the ex situ giant panda population is aging, and improved understanding of age-related changes is necessary. Urine and blood samples were collected in April and July 2015 and analyzed for complete blood count, serum biochemistry, and biochemical and microscopic urine analysis for all individuals sampled ( n = 7, 7-16 yr of age) from giant panda housed at the China Research and Conservation Centre for the Giant Panda in Bifengxia, Sichuan Province, China. Hematology and serum biochemistry values were similar to those previously reported for giant panda aged 2-20 yr and to Species360 (formerly International Species Information System) values. Urine was overall dilute (urine specific gravity range: 1.001-1.021), acellular, and acidic (pH range: 6-7). This is the first report of hematologic and serum biochemistry, with associated urinalysis values, in the giant panda aged 7-16 yr.

  1. Taxonomy Icon Data: giant panda [Taxonomy Icon

    Lifescience Database Archive (English)

    Full Text Available giant panda Ailuropoda melanoleuca Chordata/Vertebrata/Mammalia/Theria/Eutheria/Carnivora Ailuropoda_mela...noleuca_L.png Ailuropoda_melanoleuca_NL.png Ailuropoda_melanoleuca_S.png Ailuropoda_mela...noleuca_NS.png http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Ailuropoda+melanoleuca&t=L http://bioscien...cedbc.jp/taxonomy_icon/icon.cgi?i=Ailuropoda+melanoleuca&t=NL http://biosciencedb...c.jp/taxonomy_icon/icon.cgi?i=Ailuropoda+melanoleuca&t=S http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Ailuropoda+melanoleuca&t=NS ...

  2. Giant panda׳s tooth enamel: Structure, mechanical behavior and toughening mechanisms under indentation.

    Science.gov (United States)

    Weng, Z Y; Liu, Z Q; Ritchie, R O; Jiao, D; Li, D S; Wu, H L; Deng, L H; Zhang, Z F

    2016-12-01

    The giant panda׳s teeth possess remarkable load-bearing capacity and damage resistance for masticating bamboos. In this study, the hierarchical structure and mechanical behavior of the giant panda׳s tooth enamel were investigated under indentation. The effects of loading orientation and location on mechanical properties of the enamel were clarified and the evolution of damage in the enamel under increasing load evaluated. The nature of the damage, both at and beneath the indentation surfaces, and the underlying toughening mechanisms were explored. Indentation cracks invariably were seen to propagate along the internal interfaces, specifically the sheaths between enamel rods, and multiple extrinsic toughening mechanisms, e.g., crack deflection/twisting and uncracked-ligament bridging, were active to shield the tips of cracks from the applied stress. The giant panda׳s tooth enamel is analogous to human enamel in its mechanical properties, yet it has superior hardness and Young׳s modulus but inferior toughness as compared to the bamboo that pandas primarily feed on, highlighting the critical roles of the integration of underlying tissues in the entire tooth and the highly hydrated state of bamboo foods. Our objective is that this study can aid the understanding of the structure-mechanical property relations in the tooth enamel of mammals and further provide some insight on the food habits of the giant pandas. Copyright © 2016 Elsevier Ltd. All rights reserved.

  3. The first skull of the earliest giant panda

    OpenAIRE

    Jin, Changzhu; Dong, Wei; Hunt, Jr., Robert M.; Liu, Jinyi; Jaeger, Marc; Zhu, Qizhi

    2007-01-01

    Fossils of the giant panda Ailuropoda (Order Carnivora, Family Ursidae) are largely isolated teeth, mandibles, and a few rare skulls, known from the late Pliocene to late Pleistocene in China and Southeast Asia. Much of this material represents a Pleistocene chronospecies, Ailuropoda baconi, an animal larger than the living giant panda, Ailuropoda melanoleuca. The earliest certain record of Ailuropoda is the late Pliocene chronospecies, Ailuropoda microta, smaller than either A. baconi or A. ...

  4. Profile of microRNA in Giant Panda Blood: A Resource for Immune-Related and Novel microRNAs.

    Science.gov (United States)

    Yang, Mingyu; Du, Lianming; Li, Wujiao; Shen, Fujun; Fan, Zhenxin; Jian, Zuoyi; Hou, Rong; Shen, Yongmei; Yue, Bisong; Zhang, Xiuyue

    2015-01-01

    The giant panda (Ailuropoda melanoleuca) is one of the world's most beloved endangered mammals. Although the draft genome of this species had been assembled, little was known about the composition of its microRNAs (miRNAs) or their functional profiles. Recent studies demonstrated that changes in the expression of miRNAs are associated with immunity. In this study, miRNAs were extracted from the blood of four healthy giant pandas and sequenced by Illumina next generation sequencing technology. As determined by miRNA screening, a total of 276 conserved miRNAs and 51 novel putative miRNAs candidates were detected. After differential expression analysis, we noticed that the expressions of 7 miRNAs were significantly up-regulated in young giant pandas compared with that of adults. Moreover, 2 miRNAs were up-regulated in female giant pandas and 1 in the male individuals. Target gene prediction suggested that the miRNAs of giant panda might be relevant to the expressions of 4,602 downstream genes. Subseuqently, the predicted target genes were conducted to KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis and we found that these genes were mainly involved in host immunity, including the Ras signaling pathway, the PI3K-Akt signaling pathway, and the MAPK signaling pathway. In conclusion, our results provide the first miRNA profiles of giant panda blood, and the predicted functional analyses may open an avenue for further study of giant panda immunity.

  5. A new genotype of Cryptosporidium from giant panda (Ailuropoda melanoleuca) in China.

    Science.gov (United States)

    Liu, Xuehan; He, Tingmei; Zhong, Zhijun; Zhang, Hemin; Wang, Rongjun; Dong, Haiju; Wang, Chengdong; Li, Desheng; Deng, Jiabo; Peng, Guangneng; Zhang, Longxian

    2013-10-01

    Fifty-seven fecal samples were collected from giant pandas (Ailuropoda melanoleuca) in the China Conservation and Research Centre for the Giant Panda (CCRCGP) in Sichuan and examined for Cryptosporidium oocysts by Sheather's sugar flotation technique. An 18-year-old male giant panda was Cryptosporidium positive, with oocysts of an average size of 4.60×3.99 μm (n=50). The isolate was genetically analyzed using the partial 18S rRNA, 70 kDa heat shock protein (HSP70), Cryptosporidium oocyst wall protein (COWP) and actin genes. Multi-locus genetic characterization indicated that the present isolate was different from known Cryptosporidium species and genotypes. The closest relative was the Cryptosporidium bear genotype, with 11, 10, and 6 nucleotide differences in the 18S rRNA, HSP70, and actin genes, respectively. Significant differences were also observed in the COWP gene compared to Cryptosporidium mongoose genotype. The homology to the bear genotype at the 18S rRNA locus was 98.6%, which is comparable to that between Cryptosporidium parvum and Cryptosporidium hominis (99.2%), or between Cryptosporidium muris and Cryptosporidium andersoni (99.4%). Therefore, the Cryptosporidium in giant pandas in this study is considered as a new genotype: the Cryptosporidium giant panda genotype. © 2013 Elsevier Ireland Ltd. All rights reserved.

  6. [Expression of neuropeptide Y and long leptin receptor in gastrointestinal tract of giant panda].

    Science.gov (United States)

    Luo, Qihui; Tang, Xiuying; Chen, Zhengli; Wang, Kaiyu; Wang, Chengdong; Li, Desheng; Li, Caiwu

    2015-08-01

    To study the expression and distribution of neuropeptide Y (NPY) and long leptin receptor (OB-Rb) in the gastrointestinal tract of giant panda, samples of three animals were collected from the key laboratory for reproduction and conservation genetics of endangered wildlife of Sichuan province, China conservation and research center for the giant panda. Paraffin sections of giant panda gastrointestinal tissue samples were observed using hematoxylin-eosin staining (HE) and strept actividin-biotin complex immunohistochemical staining (IHC). The results show that the intestinal histology of three pandas was normal and no pathological changes, and there were rich single-cell and multi-cell mucous glands, long intestinal villi and thick muscularis mucosa and muscle layer. Positive cells expressing NPY and OB-Rb were widely detected in the gastrointestinal tract by IHC methods. NPY positive nerve fibers and neuronal cell were widely distributed in submucosal plexus and myenteric plexus, especially in the former. They were arranged beaded or point-like shape. NPY positive cells were observed in the shape of ellipse and polygon and mainly located in the mucous layer and intestinal glands. OB-Rb positive cells were mainly distributed in the mucous layer and the laminae propria, especially the latter. These results confirmed that NPY and OB-Rb are widely distributed in the gut of the giant panda, which provide strong reference for the research between growth and development, digestion and absorption, and immune function.

  7. China's endemic vertebrates sheltering under the protective umbrella of the giant panda.

    Science.gov (United States)

    Li, Binbin V; Pimm, Stuart L

    2016-04-01

    The giant panda attracts disproportionate conservation resources. How well does this emphasis protect other endemic species? Detailed data on geographical ranges are not available for plants or invertebrates, so we restrict our analyses to 3 vertebrate taxa: birds, mammals, and amphibians. There are gaps in their protection, and we recommend practical actions to fill them. We identified patterns of species richness, then identified which species are endemic to China, and then which, like the panda, live in forests. After refining each species' range by its known elevational range and remaining forest habitats as determined from remote sensing, we identified the top 5% richest areas as the centers of endemism. Southern mountains, especially the eastern Hengduan Mountains, were centers for all 3 taxa. Over 96% of the panda habitat overlapped the endemic centers. Thus, investing in almost any panda habitat will benefit many other endemics. Existing panda national nature reserves cover all but one of the endemic species that overlap with the panda's distribution. Of particular interest are 14 mammal, 20 bird, and 82 amphibian species that are inadequately protected. Most of these species the International Union for Conservation of Nature currently deems threatened. But 7 mammal, 3 bird, and 20 amphibian species are currently nonthreatened, yet their geographical ranges are pandas are absent and where there are no national nature reserves. The others concentrate in Yunnan, Nan Mountains, and Hainan. Here, 10 prefectures might establish new protected areas or upgrade local nature reserves to national status. © 2015 Society for Conservation Biology.

  8. Giant panda foraging and movement patterns in response to bamboo shoot growth.

    Science.gov (United States)

    Zhang, Mingchun; Zhang, Zhizhong; Li, Zhong; Hong, Mingsheng; Zhou, Xiaoping; Zhou, Shiqiang; Zhang, Jindong; Hull, Vanessa; Huang, Jinyan; Zhang, Hemin

    2018-03-01

    Diet plays a pivotal role in dictating behavioral patterns of herbivorous animals, particularly specialist species. The giant panda (Ailuropoda melanoleuca) is well-known as a bamboo specialist. In the present study, the response of giant pandas to spatiotemporal variation of bamboo shoots was explored using field surveys and GPS collar tracking. Results show the dynamics in panda-bamboo space-time relationships that have not been previously articulated. For instance, we found a higher bamboo stump height of foraged bamboo with increasing elevation, places where pandas foraged later in spring when bamboo shoots become more fibrous and woody. The time required for shoots to reach optimum height for foraging was significantly delayed as elevation increased, a pattern which corresponded with panda elevational migration patterns beginning from the lower elevational end of Fargesia robusta distribution and gradually shifting upward until the end of the shooting season. These results indicate that giant pandas can respond to spatiotemporal variation of bamboo resources, such as available shoots. Anthropogenic interference of low-elevation F. robusta habitat should be mitigated, and conservation attention and increased monitoring should be given to F. robusta areas at the low- and mid-elevation ranges, particularly in the spring shooting season.

  9. Assessment of giant panda habitat based on integration of expert system and neural network

    NARCIS (Netherlands)

    Liu, X.; Skidmore, A.K.; Bronsveld, M.C.

    2006-01-01

    To conserve giant panda effectively, it is important to understand the spatial pattern and temporal change of its habitat. Mapping is an effective approach for wildlife habitat evaluation and monitoring. The application of recently developed artificial intelligence tools, including expert systems

  10. Giant panda (Ailuropoda melanoleuca) population dynamics and bamboo (subfamily Bambusoideae) life history: a structured population approach to examining carrying capacity when the prey are semelparous

    Science.gov (United States)

    Carter, J.; Ackleh, A.S.; Leonard, B.P.; Wang, Hongfang

    1999-01-01

    The giant panda, Ailuropoda melanoleuca, is a highly specialized Ursid whose diet consists almost entirely of various species of bamboo. Bamboo (Bambusoideae) is a grass subfamily whose species often exhibit a synchronous semelparity. Synchronous semelparity can create local drops in carrying capacity for the panda. We modeled the interaction of pandas and their bamboo food resources with an age structured panda population model linked to a natural history model of bamboo biomass dynamics based on literature values of bamboo biomass, and giant panda life history dynamics. This paper reports the results of our examination of the interaction between pandas and their bamboo food resource and its implications for panda conservation. In the model all panda populations were well below the carrying capacity of the habitat. The giant panda populations growth was most sensitive to changes in birth rates and removal of reproductive aged individuals. Periodic starvation that has been documented in conjunction with bamboo die-offs is probably related to the inability to move to other areas within the region where bamboo is still available. Based on the results of this model, giant panda conservation should concentrate on keeping breeding individuals in the wild, keep corridors to different bamboo species open to pandas, and to concentrate research on bamboo life history.

  11. Detection of understory bamboo in giant panda habitats using an indirect remote sensing approach

    NARCIS (Netherlands)

    Bian, B.M.; Wang, T.; Liu, Y.F.; Fei, T.; Skidmore, A.K.

    2007-01-01

    The bamboo is the exclusive food of the wild giant pandas. Detection of the bamboo forest in giant panda habitat will help scientists further understand the spatial distribution pattern of giant pandas and their habitats. Moreover, it provides crucial scientific evidence for estimating habitat

  12. Fatal Toxoplasma gondii infection in the giant panda.

    Science.gov (United States)

    Ma, Hongyu; Wang, Zedong; Wang, Chengdong; Li, Caiwu; Wei, Feng; Liu, Quan

    2015-01-01

    Toxoplasma gondii can infect nearly all warm-blooded animals. We report an acute fatal T. gondii infection in the endangered giant panda (Ailuropoda melanoleuca) in a zoo in China, characterized by acute gastroenteritis and respiratory symptoms. T. gondii infection was confirmed by immunological and molecular methods. Multilocus nested PCR-RFLP revealed clonal type I at the SAG1 and c29-2 loci, clonal type II at the SAG2, BTUB, GRA6, c22-8, and L358 loci, and clonal type III at the alternative SAG2 and SAG3 loci, thus, a potential new genotype of T. gondii in the giant panda. Other possible pathogens were not detected. To our knowledge, this is the first report of clinical toxoplasmosis in a giant panda. © H. Ma et al., published by EDP Sciences, 2015.

  13. Fatal Toxoplasma gondii infection in the giant panda

    Directory of Open Access Journals (Sweden)

    2015-01-01

    Full Text Available Toxoplasma gondii can infect nearly all warm-blooded animals. We report an acute fatal T. gondii infection in the endangered giant panda (Ailuropoda melanoleuca in a zoo in China, characterized by acute gastroenteritis and respiratory symptoms. T. gondii infection was confirmed by immunological and molecular methods. Multilocus nested PCR-RFLP revealed clonal type I at the SAG1 and c29-2 loci, clonal type II at the SAG2, BTUB, GRA6, c22-8, and L358 loci, and clonal type III at the alternative SAG2 and SAG3 loci, thus, a potential new genotype of T. gondii in the giant panda. Other possible pathogens were not detected. To our knowledge, this is the first report of clinical toxoplasmosis in a giant panda.

  14. [Assessment of ecosystem in giant panda distribution area based on entropy method and coefficient of variation].

    Science.gov (United States)

    Yan, Zhi Gang; Li, Jun Qing

    2017-12-01

    The areas of the habitat and bamboo forest, and the size of the giant panda wild population have greatly increased, while habitat fragmentation and local population isolation have also intensified in recent years. Accurate evaluation of ecosystem status of the panda in the giant panda distribution area is important for giant panda conservation. The ecosystems of the distribution area and six mountain ranges were subdivided into habitat and population subsystems based on the hie-rarchical system theory. Using the panda distribution area as the study area and the three national surveys as the time node, the evolution laws of ecosystems were studied using the entropy method, coefficient of variation, and correlation analysis. We found that with continuous improvement, some differences existed in the evolution and present situation of the ecosystems of six mountain ranges could be divided into three groups. Ecosystems classified into the same group showed many commonalities, and difference between the groups was considerable. Problems of habitat fragmentation and local population isolation became more serious, resulting in ecosystem degradation. Individuali-zed ecological protection measures should be formulated and implemented in accordance with the conditions in each mountain system to achieve the best results.

  15. Dietary resources shape the adaptive changes of cyanide detoxification function in giant panda (Ailuropoda melanoleuca)

    OpenAIRE

    He Huang; Shangmian Yie; Yuliang Liu; Chengdong Wang; Zhigang Cai; Wenping Zhang; Jingchao Lan; Xiangming Huang; Li Luo; Kailai Cai; Rong Hou; Zhihe Zhang

    2016-01-01

    The functional adaptive changes in cyanide detoxification in giant panda appear to be response to dietary transition from typical carnivore to herbivorous bear. We tested the absorption of cyanide contained in bamboo/bamboo shoots with a feeding trial in 20 adult giant pandas. We determined total cyanide content in bamboo shoots and giant panda?s feces, levels of urinary thiocyanate and tissue rhodanese activity using color reactions with a spectrophotometer. Rhodanese expression in liver and...

  16. Functional annotation from the genome sequence of the giant panda.

    Science.gov (United States)

    Huo, Tong; Zhang, Yinjie; Lin, Jianping

    2012-08-01

    The giant panda is one of the most critically endangered species due to the fragmentation and loss of its habitat. Studying the functions of proteins in this animal, especially specific trait-related proteins, is therefore necessary to protect the species. In this work, the functions of these proteins were investigated using the genome sequence of the giant panda. Data on 21,001 proteins and their functions were stored in the Giant Panda Protein Database, in which the proteins were divided into two groups: 20,179 proteins whose functions can be predicted by GeneScan formed the known-function group, whereas 822 proteins whose functions cannot be predicted by GeneScan comprised the unknown-function group. For the known-function group, we further classified the proteins by molecular function, biological process, cellular component, and tissue specificity. For the unknown-function group, we developed a strategy in which the proteins were filtered by cross-Blast to identify panda-specific proteins under the assumption that proteins related to the panda-specific traits in the unknown-function group exist. After this filtering procedure, we identified 32 proteins (2 of which are membrane proteins) specific to the giant panda genome as compared against the dog and horse genomes. Based on their amino acid sequences, these 32 proteins were further analyzed by functional classification using SVM-Prot, motif prediction using MyHits, and interacting protein prediction using the Database of Interacting Proteins. Nineteen proteins were predicted to be zinc-binding proteins, thus affecting the activities of nucleic acids. The 32 panda-specific proteins will be further investigated by structural and functional analysis.

  17. Analysis of the cytochrome c oxidase subunit II (COX2) gene in giant panda, Ailuropoda melanoleuca.

    Science.gov (United States)

    Ling, S S; Zhu, Y; Lan, D; Li, D S; Pang, H Z; Wang, Y; Li, D Y; Wei, R P; Zhang, H M; Wang, C D; Hu, Y D

    2017-01-23

    The giant panda, Ailuropoda melanoleuca (Ursidae), has a unique bamboo-based diet; however, this low-energy intake has been sufficient to maintain the metabolic processes of this species since the fourth ice age. As mitochondria are the main sites for energy metabolism in animals, the protein-coding genes involved in mitochondrial respiratory chains, particularly cytochrome c oxidase subunit II (COX2), which is the rate-limiting enzyme in electron transfer, could play an important role in giant panda metabolism. Therefore, the present study aimed to isolate, sequence, and analyze the COX2 DNA from individuals kept at the Giant Panda Protection and Research Center, China, and compare these sequences with those of the other Ursidae family members. Multiple sequence alignment showed that the COX2 gene had three point mutations that defined three haplotypes, with 60% of the sequences corresponding to haplotype I. The neutrality tests revealed that the COX2 gene was conserved throughout evolution, and the maximum likelihood phylogenetic analysis, using homologous sequences from other Ursidae species, showed clustering of the COX2 sequences of giant pandas, suggesting that this gene evolved differently in them.

  18. Giant Panda movement patterns in the Foping Nature Reserve, China

    NARCIS (Netherlands)

    Liu, X.; Skidmore, A.K.; Wang, T.; Yong, Y.; Prins, H.H.T.

    2002-01-01

    Observing the giant panda (Ailuropoda melanoleuca) in the remote mountains of Foping Nature Reserve (NR), China, is difficult due to the dense vegetation and steep terrain. Radiotracking is an effective way to study this animal and understand its behavior and habitat use. We used radiotracking data

  19. Low major histocompatibility complex class II DQA diversity in the Giant Panda (Ailuropoda melanoleuca

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    Ruan Xiang-Dong

    2007-06-01

    Full Text Available Abstract Background The giant panda (Ailuropoda melanoleuca is one of the most endangered animals due to habitat fragmentation and loss. Although the captive breeding program for this species is now nearly two decades old, researches on the genetic background of such captive populations, especially on adaptive molecular polymorphism of major histocompatibility complex (MHC, are still limited. In this study, we characterized adaptive variation of the giant panda's MHC DQA gene by PCR amplification of its antigen-recognizing region (i.e. the exon 2 and subsequent single-strand conformational polymorphism (SSCP and sequence analyses. Results The results revealed a low level of DQA exon 2 diversity in this rare animal, presenting 6 alleles from 61 giant panda individuals. The observed polymorphism was restricted to 9 amino acid substitutions, all of which occurred at and adjacent to positions forming the functionally important antigen-binding sites. All the samples were in Hardy-Weinberg proportions. A significantly higher rate of non-synonymous than synonymous substitutions at the antigen-binding sites indicated positive selection for diversity in the locus. Conclusion The DQA allelic diversity of giant pandas was low relative to other vertebrates. Nonetheless, the pandas exhibited more alleles in DQA than those in DRB, suggesting the alpha chain genes would play a leading role when coping with certain pathogens and thus should be included in conservation genetic investigation. The microsatellite and MHC loci might predict long-term persistence potential and short-term survival ability, respectively. Consequently, it is recommended to utilize multiple suites of microsatellite markers and multiple MHC loci to detect overall genetic variation in order to design unbiased conservation strategies.

  20. Evidence for lignin oxidation by the giant panda fecal microbiome.

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    Wei Fang

    Full Text Available The digestion of lignin and lignin-related phenolic compounds from bamboo by giant pandas has puzzled scientists because of the lack of lignin-degrading genes in the genome of the bamboo-feeding animals. We constructed a 16S rRNA gene library from the microorganisms derived from the giant panda feces to identify the possibility for the presence of potential lignin-degrading bacteria. Phylogenetic analysis showed that the phylotypes of the intestinal bacteria were affiliated with the phyla Proteobacteria (53% and Firmicutes (47%. Two phylotypes were affiliated with the known lignin-degrading bacterium Pseudomonas putida and the mangrove forest bacteria. To test the hypothesis that microbes in the giant panda gut help degrade lignin, a metagenomic library of the intestinal bacteria was constructed and screened for clones that contained genes encoding laccase, a lignin-degrading related enzyme. A multicopper oxidase gene, designated as lac51, was identified from a metagenomic clone. Sequence analysis and copper content determination indicated that Lac51 is a laccase rather than a metallo-oxidase and may work outside its original host cell because it has a TAT-type signal peptide and a transmembrane segment at its N-terminus. Lac51 oxidizes a variety of lignin-related phenolic compounds, including syringaldazine, 2,6-dimethoxyphenol, ferulic acid, veratryl alcohol, guaiacol, and sinapinic acid at conditions that simulate the physiologic environment in giant panda intestines. Furthermore, in the presence of 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid (ABTS, syringic acid, or ferulic acid as mediators, the oxidative ability of Lac51 on lignin was promoted. The absorbance of lignin at 445 nm decreased to 36% for ABTS, 51% for syringic acid, and 51% for ferulic acid after incubation for 10 h. Our findings demonstrate that the intestinal bacteria of giant pandas may facilitate the oxidation of lignin moieties, thereby clarifying the digestion

  1. Profile of microRNA in Giant Panda Blood: A Resource for Immune-Related and Novel microRNAs.

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    Mingyu Yang

    Full Text Available The giant panda (Ailuropoda melanoleuca is one of the world's most beloved endangered mammals. Although the draft genome of this species had been assembled, little was known about the composition of its microRNAs (miRNAs or their functional profiles. Recent studies demonstrated that changes in the expression of miRNAs are associated with immunity. In this study, miRNAs were extracted from the blood of four healthy giant pandas and sequenced by Illumina next generation sequencing technology. As determined by miRNA screening, a total of 276 conserved miRNAs and 51 novel putative miRNAs candidates were detected. After differential expression analysis, we noticed that the expressions of 7 miRNAs were significantly up-regulated in young giant pandas compared with that of adults. Moreover, 2 miRNAs were up-regulated in female giant pandas and 1 in the male individuals. Target gene prediction suggested that the miRNAs of giant panda might be relevant to the expressions of 4,602 downstream genes. Subseuqently, the predicted target genes were conducted to KEGG (Kyoto Encyclopedia of Genes and Genomes pathway analysis and we found that these genes were mainly involved in host immunity, including the Ras signaling pathway, the PI3K-Akt signaling pathway, and the MAPK signaling pathway. In conclusion, our results provide the first miRNA profiles of giant panda blood, and the predicted functional analyses may open an avenue for further study of giant panda immunity.

  2. Giant Panda (Ailuropoda melanoleuca) Buccal Mucosa Tissue as a Source of Multipotent Progenitor Cells.

    Science.gov (United States)

    Prescott, Hilary M A; Manning, Craig; Gardner, Aaron; Ritchie, William A; Pizzi, Romain; Girling, Simon; Valentine, Iain; Wang, Chengdong; Jahoda, Colin A B

    2015-01-01

    Since the first mammal was cloned, the idea of using this technique to help endangered species has aroused considerable interest. However, several issues limit this possibility, including the relatively low success rate at every stage of the cloning process, and the dearth of usable tissues from these rare animals. iPS cells have been produced from cells from a number of rare mammalian species and this is the method of choice for strategies to improve cloning efficiency and create new gametes by directed differentiation. Nevertheless information about other stem cell/progenitor capabilities of cells from endangered species could prove important for future conservation approaches and adds to the knowledge base about cellular material that can be extremely limited. Multipotent progenitor cells, termed skin-derived precursor (SKP) cells, can be isolated directly from mammalian skin dermis, and human cheek tissue has also been shown to be a good source of SKP-like cells. Recently we showed that structures identical to SKPs termed m-SKPs could be obtained from monolayer/ two dimensional (2D) skin fibroblast cultures. Here we aimed to isolate m-SKPs from cultured cells of three endangered species; giant panda (Ailuropoda melanoleuca); red panda (Ailurus fulgens); and Asiatic lion (Panthera leo persica). m-SKP-like spheres were formed from the giant panda buccal mucosa fibroblasts; whereas dermal fibroblast (DF) cells cultured from abdominal skin of the other two species were unable to generate spheres. Under specific differentiation culture conditions giant panda spheres expressed neural, Schwann, adipogenic and osteogenic cell markers. Furthermore, these buccal mucosa derived spheres were shown to maintain expression of SKP markers: nestin, versican, fibronectin, and P75 and switch on expression of the stem cell marker ABCG2. These results demonstrate that giant panda cheek skin can be a useful source of m-SKP multipotent progenitors. At present lack of sample numbers

  3. Giant Panda (Ailuropoda melanoleuca Buccal Mucosa Tissue as a Source of Multipotent Progenitor Cells.

    Directory of Open Access Journals (Sweden)

    Hilary M A Prescott

    Full Text Available Since the first mammal was cloned, the idea of using this technique to help endangered species has aroused considerable interest. However, several issues limit this possibility, including the relatively low success rate at every stage of the cloning process, and the dearth of usable tissues from these rare animals. iPS cells have been produced from cells from a number of rare mammalian species and this is the method of choice for strategies to improve cloning efficiency and create new gametes by directed differentiation. Nevertheless information about other stem cell/progenitor capabilities of cells from endangered species could prove important for future conservation approaches and adds to the knowledge base about cellular material that can be extremely limited. Multipotent progenitor cells, termed skin-derived precursor (SKP cells, can be isolated directly from mammalian skin dermis, and human cheek tissue has also been shown to be a good source of SKP-like cells. Recently we showed that structures identical to SKPs termed m-SKPs could be obtained from monolayer/ two dimensional (2D skin fibroblast cultures. Here we aimed to isolate m-SKPs from cultured cells of three endangered species; giant panda (Ailuropoda melanoleuca; red panda (Ailurus fulgens; and Asiatic lion (Panthera leo persica. m-SKP-like spheres were formed from the giant panda buccal mucosa fibroblasts; whereas dermal fibroblast (DF cells cultured from abdominal skin of the other two species were unable to generate spheres. Under specific differentiation culture conditions giant panda spheres expressed neural, Schwann, adipogenic and osteogenic cell markers. Furthermore, these buccal mucosa derived spheres were shown to maintain expression of SKP markers: nestin, versican, fibronectin, and P75 and switch on expression of the stem cell marker ABCG2. These results demonstrate that giant panda cheek skin can be a useful source of m-SKP multipotent progenitors. At present lack of

  4. Dietary resources shape the adaptive changes of cyanide detoxification function in giant panda (Ailuropoda melanoleuca).

    Science.gov (United States)

    Huang, He; Yie, Shangmian; Liu, Yuliang; Wang, Chengdong; Cai, Zhigang; Zhang, Wenping; Lan, Jingchao; Huang, Xiangming; Luo, Li; Cai, Kailai; Hou, Rong; Zhang, Zhihe

    2016-10-05

    The functional adaptive changes in cyanide detoxification in giant panda appear to be response to dietary transition from typical carnivore to herbivorous bear. We tested the absorption of cyanide contained in bamboo/bamboo shoots with a feeding trial in 20 adult giant pandas. We determined total cyanide content in bamboo shoots and giant panda's feces, levels of urinary thiocyanate and tissue rhodanese activity using color reactions with a spectrophotometer. Rhodanese expression in liver and kidney at transcription and translation levels were measured using real-time RT-PCR and immunohistochemistry, respectively. We compared differences of rhodanese activity and gene expressions among giant panda, rabbit (herbivore) and cat (carnivore), and between newborn and adult giant pandas. Bamboo shoots contained 3.2 mg/kg of cyanide and giant pandas absorbed more than 65% of cyanide. However, approximately 80% of absorbed cyanide was metabolized to less toxic thiocyanate that was discharged in urine. Rhodanese expression and activity in liver and kidney of giant panda were significantly higher than in cat, but lower than in rabbit (all P pandas were higher than that in newborn cub. Phylogenetic analysis of both nucleotide and amino acid sequences of the rhodanese gene supported a closer relationship of giant panda with carnivores than with herbivores.

  5. Genetic consequences of historical anthropogenic and ecological events on giant pandas.

    Science.gov (United States)

    Zhu, Lifeng; Hu, Yibo; Qi, Dunwu; Wu, Hua; Zhan, Xiangjiang; Zhang, Zhejun; Bruford, Michael W; Wang, Jinliang; Yang, Xuyu; Gu, Xiaodong; Zhang, Lei; Zhang, Baowei; Zhang, Shanning; Wei, Fuwen

    2013-10-01

    The giant panda (Ailuropoda melanoleuca) was taken to the brink of extinction in the 1980s through a combination of deforestation, large-scale loss of bamboo in the core of its range, poaching, and zoo collection, causing over 1000 deaths from the 1950s. It was thought that the drastic population decline was likely to impose a severe impact on population viability. Here, based on temporal genotyping of individuals, we show that this rapid decline did not significantly reduce the overall effective population size and genetic variation of this species, or of the two focal populations (Minshan and Qionglai) that declined the most. These results are contrary to previously assumptions, probably because the population decline has not produced the expected negative impact due to the short time scale involved (at most 10 generations), or because previous surveys underestimated the population size at the time of decline. However, if present-day habitat fragmentation and limited migration of giant pandas remains, we predict a loss of genetic diversity across the giant pandas' range in the near future. Thus, our findings highlight the substantial resilience of this species when facing demographic and environmental stochasticity, but key conservation strategies, such as enhancing habitat connectivity and habitat restoration should be immediately implemented to retain the extant genetic variation and maintain long-term evolutionary potential of this endangered species.

  6. Microsatellite variability reveals high genetic diversity and low genetic differentiation in a critical giant panda population

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    Jiandong YANG, Zhihe ZHANG, Fujun SHEN, Xuyu YANG, Liang ZHANG, Limin CHEN, Wenping ZHANG, Qing ZHU, Rong HOU

    2011-12-01

    Full Text Available Understanding present patterns of genetic diversity is critical in order to design effective conservation and management strategies for endangered species. Tangjiahe Nature Reserve (NR is one of the most important national reserves for giant pandas Ailuropoda melanoleuca in China. Previous studies have shown that giant pandas in Tangjiahe NR may be threatened by population decline and fragmentation. Here we used 10 microsatellite DNA markers to assess the genetic variability in the Tangjiahe population. The results indicate a low level of genetic differentiation between the Hongshihe and Motianling subpopulations in the reserve. Assignment tests using the Bayesian clustering method in STRUCTURE identified one genetic cluster from 42 individuals of the two subpopulations. All individuals from the same subpopulation were assigned to one cluster. This indicates high gene flow between subpopulations. F statistic analyses revealed a low FIS-value of 0.024 in the total population and implies a randomly mating population in Tangjiahe NR. Additionally, our data show a high level of genetic diversity for the Tangjiahe population. Mean allele number (A, Allelic richness (AR and mean expected heterozygosity (HE for the Tangjiahe population was 5.9, 5.173 and 0.703, respectively. This wild giant panda population can be restored through concerted effort [Current Zoology 57 (6: 717–724, 2011].

  7. Giant pandas failed to show mirror self-recognition.

    Science.gov (United States)

    Ma, Xiaozan; Jin, Yuan; Luo, Bo; Zhang, Guiquan; Wei, Rongping; Liu, Dingzhen

    2015-05-01

    Mirror self-recognition (MSR), i.e., the ability to recognize oneself in a mirror, is considered a potential index of self-recognition and the foundation of individual development. A wealth of literature on MSR is available for social animals, such as chimpanzees, Asian elephants and dolphins, yet little is known about MSR in solitary mammalian species. We aimed to evaluate whether the giant panda can recognize itself in the mirror, and whether this capacity varies with age. Thirty-four captive giant pandas (F:M = 18:16; juveniles, sub-adults and adults) were subjected to four mirror tests: covered mirror tests, open mirror tests, water mark control tests, and mark tests. The results showed that, though adult, sub-adult and juvenile pandas exposed to mirrors spent similar amounts of time in social mirror-directed behaviors (χ(2) = 0.719, P = 0.698), none of them used the mirror to touch the mark on their head, a self-directed behavior suggesting MSR. Individuals of all age groups initially displayed attacking, threatening, foot scraping and backwards walking behaviors when exposed to their self-images in the mirror. Our data indicate that, regardless of age, the giant pandas did not recognize their self-image in the mirror, but instead considered the image to be a conspecific. Our results add to the available information on mirror self-recognition in large mammals, provide new information on a solitary species, and will be useful for enclosure design and captive animal management.

  8. Changes of foraging patch selection and utilization by a giant panda after bamboo flowering.

    Science.gov (United States)

    Li, Guochun; Song, Huadong; Altigani, Latifa A A; Zheng, Xueli; Bu, Shuhai

    2017-07-01

    The bamboo flowering leads to the habitat fragmentation and food quality decline of a giant panda. Few empirical research has been conducted about the giant panda's response to the bamboo flowering. Here, we investigated the characteristics of bamboo stands, giant panda's activity, and selection and utilization of bamboo stands by giant panda in Taibaishan National Nature Reserve, China, over a 3-year period (September 2013-May 2016) during the Fargesia qinlingensis flowering period. Our results indicated that the proportion of whole bamboo stands flowering has gradually expanded from 26.7% in 2013 and 33.9% in 2014 to 52.3% in 2015. Although the flowering bamboo has lower crude protein and higher crude fiber than a non-flowering bamboo, the giant panda still fed on flowering bamboo from the evidence of droppings. The giant panda left its feeding sites and moved to the high elevation along river when the proportion of flowering reached 69.2% at elevation of 2350-2450 m in the third year. With the decline of the quality of bamboo stand of Fargesia qinlingensis, the giant panda abandoned its feeding sites when the threshold value of bamboo flowering reached 56.9-69.2%. Flexibility in foraging strategy and spatial behavior can help the giant panda to better adapt to the environment.

  9. MOLECULAR CLONING, SEQUENCING, EXPRESSION AND BIOLOGICAL ACTIVITY OF GIANT PANDA (AILUROPODA MELANOLEUCA) INTERFERON-GAMMA.

    Science.gov (United States)

    Zhu, Hui; Wang, Wen-Xiu; Wang, Bao-Qin; Zhu, Xiao-Fu; Wu, Xu-Jin; Ma, Qing-Yi; Chen, De-Kun

    2012-06-29

    The giant panda (Ailuropoda melanoleuca) is an endangered species and indigenous to China. Interferon-gamma (IFN-γ) is the only member of type □ IFN and is vital for the regulation of host adapted immunity and inflammatory response. Little is known aboutthe FN-γ gene and its roles in giant panda.In this study, IFN-γ gene of Qinling giant panda was amplified from total blood RNA by RT-CPR, cloned, sequenced and analysed. The open reading frame (ORF) of Qinling giant panda IFN-γ encodes 152 amino acidsand is highly similar to Sichuan giant panda with an identity of 99.3% in cDNA sequence. The IFN-γ cDNA sequence was ligated to the pET32a vector and transformed into E. coli BL21 competent cells. Expression of recombinant IFN-γ protein of Qinling giant panda in E. coli was confirmed by SDS-PAGE and Western blot analysis. Biological activity assay indicated that the recombinant IFN-γ protein at the concentration of 4-10 µg/ml activated the giant panda peripheral blood lymphocytes,while at 12 µg/mlinhibited. the activation of the lymphocytes.These findings provide insights into the evolution of giant panda IFN-γ and information regarding amino acid residues essential for their biological activity.

  10. Seasonal changes of progesterone and testosterone contents in hair of giant pandas

    International Nuclear Information System (INIS)

    Guo Dazhi; Liu Xianyi; Chen Faju

    1994-01-01

    Seasonal changes of progesterone content (PSC) in hair of three female giant pandas and testosterone content (TSC) in hair of two male giant pandas were tested by radioimmunoassay. During March to early June, PSC in two non-pregnant giant pandas (x-bar+-SD = 13.40 +- 10.06 and 10.60 +- 8.88 ng/g hair respectively) were higher than those in non-breeding season (3.07 +-1.07 and 3.20 +- 1.15 ng/g, P<0.01). PSC in a 18-year-old female giant panda remained at low levels (2.72 +- 1.49 ng/g) during March to December. In a twin-bear giant panda, PSC (6.77 +- 3.66 ng/g) appeared higher than that in non-pregnant giant pandas in non-breeding season. Around February to the end of May, TSC in two male giant pandas (1.89 +- 1.71 and 1.82 +- 1.04 ng/g respectively) were also higher than that in non-breeding season (0.98 +- 0.57 and 0.75 +- 0.39 ng/g, P<0.01). the findings from the study implied that giant panda's hair is possible to be used as a specimen to carry out steroids research in the endangered species

  11. Characterization and Analysis of Whole Transcriptome of Giant Panda Spleens: Implying Critical Roles of Long Non-Coding RNAs in Immunity.

    Science.gov (United States)

    Peng, Rui; Liu, Yuliang; Cai, Zhigang; Shen, Fujun; Chen, Jiasong; Hou, Rong; Zou, Fangdong

    2018-01-01

    Giant pandas, an endangered species, are a powerful symbol of species conservation. Giant pandas may suffer from a variety of diseases. Owing to their highly specialized diet of bamboo, giant pandas are thought to have a relatively weak ability to resist diseases. The spleen is the largest organ in the lymphatic system. However, there is little known about giant panda spleen at a molecular level. Thus, clarifying the regulatory mechanisms of spleen could help us further understand the immune system of the giant panda as well as its conservation. The two giant panda spleens were from two male individuals, one newborn and one an adult, in a non-pathological condition. The whole transcriptomes of mRNA, lncRNA, miRNA, and circRNA in the two spleens were sequenced using the Illumina HiSeq platform. EBseq and IDEG6 were used to observe the differentially expressed genes (DEGs) between these two spleens. Gene Ontology and KEGG analyses were used to annotate the function of DEGs. Furthermore, networks between non-coding RNAs and protein-coding genes were constructed to investigate the relationship between non-coding RNAs and immune-associated genes. By comparative analysis of the whole transcriptomes of these two spleens, we found that one of the major roles of lncRNAs could be involved in the regulation of immune responses of giant panda spleens. In addition, our results also revealed that microRNAs and circRNAs may have evolved to regulate a large set of biological processes of giant panda spleens, and circRNAs may function as miRNA sponges. To our knowledge, this is the first report of lncRNAs and circRNAs in giant panda, which could be a useful resource for further giant panda research. Our study reveals the potential functional roles of miRNAs, lncRNAs, and circRNAs in giant panda spleen. © 2018 The Author(s). Published by S. Karger AG, Basel.

  12. Characterization and Analysis of Whole Transcriptome of Giant Panda Spleens: Implying Critical Roles of Long Non-Coding RNAs in Immunity

    Directory of Open Access Journals (Sweden)

    Rui Peng

    2018-04-01

    Full Text Available Background/Aims: Giant pandas, an endangered species, are a powerful symbol of species conservation. Giant pandas may suffer from a variety of diseases. Owing to their highly specialized diet of bamboo, giant pandas are thought to have a relatively weak ability to resist diseases. The spleen is the largest organ in the lymphatic system. However, there is little known about giant panda spleen at a molecular level. Thus, clarifying the regulatory mechanisms of spleen could help us further understand the immune system of the giant panda as well as its conservation. Methods: The two giant panda spleens were from two male individuals, one newborn and one an adult, in a non-pathological condition. The whole transcriptomes of mRNA, lncRNA, miRNA, and circRNA in the two spleens were sequenced using the Illumina HiSeq platform. EBseq and IDEG6 were used to observe the differentially expressed genes (DEGs between these two spleens. Gene Ontology and KEGG analyses were used to annotate the function of DEGs. Furthermore, networks between non-coding RNAs and protein-coding genes were constructed to investigate the relationship between non-coding RNAs and immune-associated genes. Results: By comparative analysis of the whole transcriptomes of these two spleens, we found that one of the major roles of lncRNAs could be involved in the regulation of immune responses of giant panda spleens. In addition, our results also revealed that microRNAs and circRNAs may have evolved to regulate a large set of biological processes of giant panda spleens, and circRNAs may function as miRNA sponges. Conclusion: To our knowledge, this is the first report of lncRNAs and circRNAs in giant panda, which could be a useful resource for further giant panda research. Our study reveals the potential functional roles of miRNAs, lncRNAs, and circRNAs in giant panda spleen.

  13. Ancient DNA from Giant Panda (Ailuropoda melanoleuca) of South-Western China Reveals Genetic Diversity Loss during the Holocene.

    Science.gov (United States)

    Sheng, Gui-Lian; Barlow, Axel; Cooper, Alan; Hou, Xin-Dong; Ji, Xue-Ping; Jablonski, Nina G; Zhong, Bo-Jian; Liu, Hong; Flynn, Lawrence J; Yuan, Jun-Xia; Wang, Li-Rui; Basler, Nikolas; Westbury, Michael V; Hofreiter, Michael; Lai, Xu-Long

    2018-04-06

    The giant panda was widely distributed in China and south-eastern Asia during the middle to late Pleistocene, prior to its habitat becoming rapidly reduced in the Holocene. While conservation reserves have been established and population numbers of the giant panda have recently increased, the interpretation of its genetic diversity remains controversial. Previous analyses, surprisingly, have indicated relatively high levels of genetic diversity raising issues concerning the efficiency and usefulness of reintroducing individuals from captive populations. However, due to a lack of DNA data from fossil specimens, it is unknown whether genetic diversity was even higher prior to the most recent population decline. We amplified complete cyt b and 12s rRNA, partial 16s rRNA and ND1 , and control region sequences from the mitochondrial genomes of two Holocene panda specimens. We estimated genetic diversity and population demography by analyzing the ancient mitochondrial DNA sequences alongside those from modern giant pandas, as well as from other members of the bear family (Ursidae). Phylogenetic analyses show that one of the ancient haplotypes is sister to all sampled modern pandas and the second ancient individual is nested among the modern haplotypes, suggesting that genetic diversity may indeed have been higher earlier during the Holocene. Bayesian skyline plot analysis supports this view and indicates a slight decline in female effective population size starting around 6000 years B.P., followed by a recovery around 2000 years ago. Therefore, while the genetic diversity of the giant panda has been affected by recent habitat contraction, it still harbors substantial genetic diversity. Moreover, while its still low population numbers require continued conservation efforts, there seem to be no immediate threats from the perspective of genetic evolutionary potential.

  14. Ancient DNA from Giant Panda (Ailuropoda melanoleuca of South-Western China Reveals Genetic Diversity Loss during the Holocene

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    Gui-Lian Sheng

    2018-04-01

    Full Text Available The giant panda was widely distributed in China and south-eastern Asia during the middle to late Pleistocene, prior to its habitat becoming rapidly reduced in the Holocene. While conservation reserves have been established and population numbers of the giant panda have recently increased, the interpretation of its genetic diversity remains controversial. Previous analyses, surprisingly, have indicated relatively high levels of genetic diversity raising issues concerning the efficiency and usefulness of reintroducing individuals from captive populations. However, due to a lack of DNA data from fossil specimens, it is unknown whether genetic diversity was even higher prior to the most recent population decline. We amplified complete cytb and 12s rRNA, partial 16s rRNA and ND1, and control region sequences from the mitochondrial genomes of two Holocene panda specimens. We estimated genetic diversity and population demography by analyzing the ancient mitochondrial DNA sequences alongside those from modern giant pandas, as well as from other members of the bear family (Ursidae. Phylogenetic analyses show that one of the ancient haplotypes is sister to all sampled modern pandas and the second ancient individual is nested among the modern haplotypes, suggesting that genetic diversity may indeed have been higher earlier during the Holocene. Bayesian skyline plot analysis supports this view and indicates a slight decline in female effective population size starting around 6000 years B.P., followed by a recovery around 2000 years ago. Therefore, while the genetic diversity of the giant panda has been affected by recent habitat contraction, it still harbors substantial genetic diversity. Moreover, while its still low population numbers require continued conservation efforts, there seem to be no immediate threats from the perspective of genetic evolutionary potential.

  15. Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation

    DEFF Research Database (Denmark)

    Zhao, Shancen; Zheng, Pingping; Dong, Shanshan

    2013-01-01

    The panda lineage dates back to the late Miocene and ultimately leads to only one extant species, the giant panda (Ailuropoda melanoleuca). Although global climate change and anthropogenic disturbances are recognized to shape animal population demography their contribution to panda population...... dynamics remains largely unknown. We sequenced the whole genomes of 34 pandas at an average 4.7-fold coverage and used this data set together with the previously deep-sequenced panda genome to reconstruct a continuous demographic history of pandas from their origin to the present. We identify two...... panda populations that show genetic adaptation to their environments. However, in all three populations, anthropogenic activities have negatively affected pandas for 3,000 years....

  16. Book Reivew: A chance for lasting survival: Ecology and behavior of wild giant pandas

    Science.gov (United States)

    van Manen, Frank T.

    2015-01-01

    “If we watch species going extinct in front of us, how useful is that we publish 100 or even 1,000 papers by studying them?” (p. 330). This quote from senior author Pan Wenshi captures an important essence of this book. A translation of a 2001 monograph originally published in Chinese, this volume details the findings of a 15-year research program in the Qinling Mountains by Wenshi and his students. Starting in 1984, this Chinese research team from Peking University was only the second to study free-ranging pandas. This is the remarkable journey of a devoted group of field researchers who helped changed the course of giant panda conservation, events that few conservationists outside of China have been aware of until now.Review info: A chance for lasting survival: Ecology and behavior of wild giant pandas. By Pan Wenshi, Lü Zhi, Zhu Xiaojian, Wang Dajun, Wang Hao, Long Yu, Fu Dali, and Zhou Xin; edited by, William J. McShea, Richard B. Harris, David L. Garshelis, and Wang Dajun, 2014. ISBN: 978-1-935623-17-5, 349pp.

  17. Face of the giant panda sign in Wilson disease

    Directory of Open Access Journals (Sweden)

    Sumit Chakraborty

    2013-08-01

    Full Text Available Wilson disease usually presents with neurologic or hepatic manifestations. Magnetic resonance imaging (MRI of the brain is very informative in diagnosiing of this disease, especially in patients with neurological features. High T2 signal intensity in the corpus striatum is the most commonly encountered MRI finding. The 'face of the giant panda' sign is seen on axial T2-weighted MRI, and results from abnormal signal intensities in the midbrain. Though uncommon, the sign is considered as the pathognomonic MRI sign of Wilson disease.

  18. The minimum area requirements (MAR) for giant panda: an empirical study.

    Science.gov (United States)

    Qing, Jing; Yang, Zhisong; He, Ke; Zhang, Zejun; Gu, Xiaodong; Yang, Xuyu; Zhang, Wen; Yang, Biao; Qi, Dunwu; Dai, Qiang

    2016-12-08

    Habitat fragmentation can reduce population viability, especially for area-sensitive species. The Minimum Area Requirements (MAR) of a population is the area required for the population's long-term persistence. In this study, the response of occupancy probability of giant pandas against habitat patch size was studied in five of the six mountain ranges inhabited by giant panda, which cover over 78% of the global distribution of giant panda habitat. The probability of giant panda occurrence was positively associated with habitat patch area, and the observed increase in occupancy probability with patch size was higher than that due to passive sampling alone. These results suggest that the giant panda is an area-sensitive species. The MAR for giant panda was estimated to be 114.7 km 2 based on analysis of its occupancy probability. Giant panda habitats appear more fragmented in the three southern mountain ranges, while they are large and more continuous in the other two. Establishing corridors among habitat patches can mitigate habitat fragmentation, but expanding habitat patch sizes is necessary in mountain ranges where fragmentation is most intensive.

  19. Comparing the plant diversity between artificial forest and nature growth forest in a giant panda habitat.

    Science.gov (United States)

    Kang, Dongwei; Wang, Xiaorong; Li, Shuang; Li, Junqing

    2017-06-15

    Artificial restoration is an important way to restore forests, but little is known about its effect on the habitat restoration of the giant panda. In the present study, we investigated the characteristics of artificial forest in the Wanglang Nature Reserve to determine whether through succession it has formed a suitable habitat for the giant panda. We compared artificial forest characteristics with those of natural habitat used by the giant panda. We found that the dominant tree species in artificial forest differed from those in the natural habitat. The artificial forest had lower plant species richness and diversity in the tree and shrub layers than did the latter, and its community structure was characterized by smaller tree and bamboo sizes, and fewer and lower bamboo clumps, but more trees and larger shrub sizes. The typical community collocation of artificial forest was a "Picea asperata + no-bamboo" model, which differs starkly from the giant panda's natural habitat. After several years of restoration, the artificial forest has failed to become a suitable habitat for the giant panda. Therefore, a simple way of planting individual trees cannot restore giant panda habitat; instead, habitat restoration should be based on the habitat requirements of the giant panda.

  20. Characterizing the spatial distribution of giant pandas (Ailuropoda melanoleuca) in fragmented forest landscapes

    NARCIS (Netherlands)

    Wang, T.; Ye, X.P.; Skidmore, A.K.; Toxopeus, A.G.

    2010-01-01

    Aim. To examine the effects of forest fragmentation on the distribution of the entire wild giant panda (Ailuropoda melanoleuca) population, and to propose a modelling approach for monitoring the spatial distribution and habitat of pandas at the landscape scale using Moderate Resolution Imaging

  1. Distribution of Economic Benefits from Ecotourism: A Case Study of Wolong Nature Reserve for Giant Pandas in China

    Science.gov (United States)

    He, Guangming; Chen, Xiaodong; Liu, Wei; Bearer, Scott; Zhou, Shiqiang; Cheng, Lily Yeqing; Zhang, Hemin; Ouyang, Zhiyun; Liu, Jianguo

    2008-12-01

    Ecotourism is widely promoted as a conservation tool and actively practiced in protected areas worldwide. Theoretically, support for conservation from the various types of stakeholder inside and outside protected areas is maximized if stakeholders benefit proportionally to the opportunity costs they bear. The disproportional benefit distribution among stakeholders can erode their support for or lead to the failure of ecotourism and conservation. Using Wolong Nature Reserve for Giant Pandas (China) as an example, we demonstrate two types of uneven distribution of economic benefits among four major groups of stakeholders. First, a significant inequality exists between the local rural residents and the other types of stakeholder. The rural residents are the primary bearers of the cost of conservation, but the majority of economic benefits (investment, employment, and goods) in three key ecotourism sectors (infrastructural construction, hotels/restaurants, and souvenir sales) go to other stakeholders. Second, results show that the distribution of economic benefits is unequal among the rural residents inside the reserve. Most rural households that benefit from ecotourism are located near the main road and potentially have less impact on panda habitat than households far from the road and closer to panda habitats. This distribution gap is likely to discourage conservation support from the latter households, whose activities are the main forces degrading panda habitats. We suggest that the unequal distribution of the benefits from ecotourism can be lessened by enhancing local participation, increasing the use of local goods, and encouraging relocation of rural households closer to ecotourism facilities.

  2. Comparative morphology of the muscles of mastication in the giant panda and the Asiatic black bear.

    Science.gov (United States)

    Endo, Hideki; Taru, Hajime; Yamamoto, Masako; Arishima, Kazuyoshi; Sasaki, Motoki

    2003-06-01

    The morphological differences in the muscles of mastication between the giant panda (Ailuropoda melanoleuca) and the Asiatic black bear (Ursus thibetanus) were sought to confirm the adaptational strategy of these muscles in the giant panda. We measured some skull characteristics and weighed the muscles of mastication, and macroscopically observed the muscles of mastication in the two species. The noticeable differences between the two species are classified as follows: (1) The size ratio of the zygomatic width was much larger in the giant panda than in the Asiatic black bear. (2) The weight ratio of the two pterygoid muscles was also much larger in the giant panda than in the Asiatic black bear. (3) The lateral slips of the temporal muscles are thicker and stronger in the Asiatic black bear than in the giant panda. (4) The deep layer of the masseter muscle was rostrocaudally divided, and a complicated running of tendons is observed in the giant panda. (5) The two pterygoid muscles were much larger and well-developed in the giant panda than in the Asiatic black bear. The points (1) and (4) may be related to the generation of the force necessary to chew the bamboo in the giant panda. We thought that the large mass of the masseter and temporal muscles are needed in this species. In the points of (2) and (5), the two pterygoid muscles were obviously different in form and weight ratio between the two species. We suggest that the two pterygoid muscles may act as an additional force generator to dorsoventrally press and crush bamboo stems.

  3. A novel polyomavirus from the nasal cavity of a giant panda (Ailuropoda melanoleuca).

    Science.gov (United States)

    Qi, Dunwu; Shan, Tongling; Liu, Zhijian; Deng, Xutao; Zhang, Zhihe; Bi, Wenlei; Owens, Jacob Robert; Feng, Feifei; Zheng, Lisong; Huang, Feng; Delwart, Eric; Hou, Rong; Zhang, Wen

    2017-10-27

    Polyomaviruses infect a wide variety of mammalian and avian hosts with a broad spectrum of outcomes including asymptomatic infection, acute systemic disease, and tumor induction. Viral metagenomics and general PCR methods were used to detected viral nucleic acid in the samples from a diseased and healthy giant pandas. A novel polyomavirus, the giant panda polyomavirus 1 (GPPyV1) from the nasal cavity of a dead giant panda (Ailuropoda melanoleuca) was characterized. The GPPyV1 genome is 5144 bp in size and reveals five putative open-reading frames coding for the classic small and large T antigens in the early region, and the VP1, VP2 and VP3 capsid proteins in the late region. Phylogenetic analyses of the large T antigen of the GPPyV1 indicated GPPyV1 belonged to a putative new species within genus Deltapolyomavirus, clustering with four human polyomavirus species. The GPPyV1 VP1 and VP2 clustered with genus Alphapolyomavirus. Our epidemiologic study indicated that this novel polyomavirus was also detected in nasal swabs and fecal samples collected from captive healthy giant pandas. A novel polyomavirus was detected in giant pandas and its complete genome was characterized, which may cause latency infection in giant pandas.

  4. Metagenomic Study Suggests That the Gut Microbiota of the Giant Panda (Ailuropoda melanoleuca) May Not Be Specialized for Fiber Fermentation

    OpenAIRE

    Wei Guo; Sudhanshu Mishra; Jiangchao Zhao; Jingsi Tang; Bo Zeng; Fanli Kong; Ruihong Ning; Miao Li; Hengzhi Zhang; Yutian Zeng; Yuanliangzi Tian; Yihang Zhong; Hongdi Luo; Yunhan Liu; Jiandong Yang

    2018-01-01

    Bamboo-eating giant panda (Ailuropoda melanoleuca) is an enigmatic species, which possesses a carnivore-like short and simple gastrointestinal tract (GIT). Despite the remarkable studies on giant panda, its diet adaptability status continues to be a matter of debate. To resolve this puzzle, we investigated the functional potential of the giant panda gut microbiome using shotgun metagenomic sequencing of fecal samples. We also compared our data with similar data from other animal species repre...

  5. Temporal changes in giant panda habitat connectivity across boundaries of Wolong Nature Reserve, China.

    Science.gov (United States)

    Viña, Andrés; Bearer, Scott; Chen, Xiaodong; He, Guangming; Linderman, Marc; An, Li; Zhang, Hemin; Ouyang, Zhiyun; Liu, Jianguo

    2007-06-01

    Global biodiversity loss is largely driven by human activities such as the conversion of natural to human-dominated landscapes. A popular approach to mitigating land cover change is the designation of protected areas (e.g., nature reserves). Nature reserves are traditionally perceived as strongholds of biodiversity conservation. However, many reserves are affected by land cover changes not only within their boundaries, but also in their surrounding areas. This study analyzed the changes in habitat for the giant panda (Ailuropoda melanoleuca) inside Wolong Nature Reserve, Sichuan, China, and in a 3-km buffer area outside its boundaries, through a time series of classified satellite imagery and field observations. Habitat connectivity between the inside and the outside of the reserve diminished between 1965 and 2001 because panda habitat was steadily lost both inside and outside the reserve. However, habitat connectivity slightly increased between 1997 and 2001 due to the stabilization of some panda habitat inside and outside the reserve. This stabilization most likely occurred as a response to changes in socioeconomic activities (e.g., shifts from agricultural to nonagricultural economies). Recently implemented government policies could further mitigate the impacts of land cover change on panda habitat. The results suggest that Wolong Nature Reserve, and perhaps other nature reserves in other parts of the world, cannot be managed as an isolated entity because habitat connectivity declines with land cover changes outside the reserve even if the area inside the reserve is well protected. The findings and approaches presented in this paper may also have important implications for the management of other nature reserves across the world.

  6. Microbial diversity and evidence of novel homoacetogens in the gut of both geriatric and adult giant pandas (Ailuropoda melanoleuca.

    Directory of Open Access Journals (Sweden)

    Hein Min Tun

    Full Text Available Recent studies have described the bacterial community residing in the guts of giant pandas, together with the presence of lignocellulolytic enzymes. However, a more comprehensive understanding of the intestinal microbial composition and its functional capacity in giant pandas remains a major goal. Here, we conducted a comparison of bacterial, fungal and homoacetogenic microbial communities from fecal samples taken from two geriatric and two adult captive giant pandas. 16S rDNA amplicon pyrosequencing revealed that Firmicutes and Proteobacteria are the most abundant microbiota in both geriatric and adult giant pandas. However, members of phylum Actinobacteria found in adult giant pandas were absent in their geriatric counterparts. Similarly, ITS1 amplicon pyrosequencing identified developmental changes in the most abundant fungal classes from Sordariomycetes in adult pandas to Saccharomycetes in geriatric pandas. Geriatric pandas exhibited significantly higher abundance of a potential probiotic fungus (Candida tropicalis as compared to adult pandas, indicating their importance in the normal digestive physiology of aged pandas. Our study also reported the presence of a lignocellulolytic white-rot fungus, Perenniporia medulla-panis, and the evidence of novel homoacetogens residing in the guts of giant pandas.

  7. Exposure to odors of rivals enhances sexual motivation in male giant pandas.

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    Xiaoxing Bian

    Full Text Available Males will alter their mating behavior to cope with the presence of their competitors. Even exposure to odors from potential competitors can greatly increase male ejaculate expenditure in a variety of animals including insects, fishes, birds and rodents. Major efforts have been made to examine males' plastic responses to sperm competition and its fitness benefits. However, the effects of competitor absence on male's sexual motivation and behaviors remain unclear, which has been proposed to be one of the causes for the poor sexual performance of some captive mammals. This study revealed that sexual motivation can be greatly enhanced in captive male giant pandas (Ailuropoda melanoleuca by exposure to chemosensory cues from either one or three conspecifics males. It had been shown that potential rivals' odors increased males' chemosensory investigation behavior, as well as their observing, following and sniffing behaviors towards estrous females. Behaviors changed regardless of the number of rivals (one or three. Our results demonstrate the effects of potential competition on male giant pandas' sexual motivation and behavioral coping strategy. We anticipate that our research will provide a fresh insight into the mechanisms underlying poor sexual performance in male captive mammals, and valuable information for the practical management and ex situ conservation of endangered species.

  8. Identification of canine parvovirus with the Q370R point mutation in the VP2 gene from a giant panda (Ailuropoda melanoleuca)

    Science.gov (United States)

    2013-01-01

    Background In this study, we sequenced and phylogenetic analyses of the VP2 genes from twelve canine parvovirus (CPV) strains obtained from eleven domestic dogs and a giant panda (Ailuropoda melanoleuca) in China. A novel canine parvovirus (CPV) was detected from the giant panda in China. Results Nucleotide and phylogenetic analysis of the capsid protein VP2 gene classified the CPV as a new CPV-2a type. Substitution of Gln for Arg at the conserved 370 residue in CPV presents an unusual variation in the new CPV-2a amino acid sequence of the giant panda and is further evidence for the continuing evolution of the virus. Conclusions These findings extend the knowledge on CPV molecular epidemiology of particular relevance to wild carnivores. PMID:23706032

  9. Use of urinary 13,14, dihydro-15-keto-prostaglandin F2α (PGFM) concentrations to diagnose pregnancy and predict parturition in the giant panda (Ailuropoda melanolecua).

    Science.gov (United States)

    Roberts, Beth M; Brown, Janine L; Kersey, David C; Snyder, Rebecca J; Durrant, Barbara S; Kouba, Andrew J

    2018-01-01

    Pregnancy determination is difficult in the giant panda (Ailuropoda melanolecua), representing a challenge for ex situ conservation efforts. Research in other species experiencing pseudopregnancy indicates that urinary/fecal concentrations of 13,14, dihydro-15-keto-prostaglandin F2α (PGFM) can accurately determine pregnancy status. Our objective was to determine if urinary PGFM concentrations are associated with pregnancy status in the giant panda. Urinary PGFM concentrations were measured in female giant pandas (n = 4) throughout gestation (n = 6) and pseudopregnancy (n = 4) using a commercial enzyme immunoassay. Regardless of pregnancy status, PGFM excretion followed a predictable pattern: 1) baseline concentrations for 11-19 weeks following ovulation; 2) a modest, initial peak 14-36 days after the start of the secondary urinary progestagen rise; 3) a subsequent period of relatively low concentrations; and 4) a large, terminal peak at the end of the luteal phase. Pregnant profiles were distinguished by an earlier initial peak (P = 0.024), higher inter-peak concentrations (P panda. Furthermore, this is the only species known to exhibit a significant PGFM increase during pseudopregnancy, suggesting a unique physiological mechanism for regulating the end of the luteal phase in the giant panda.

  10. Reverse chemical ecology: Olfactory proteins from the giant panda and their interactions with putative pheromones and bamboo volatiles.

    Science.gov (United States)

    Zhu, Jiao; Arena, Simona; Spinelli, Silvia; Liu, Dingzhen; Zhang, Guiquan; Wei, Rongping; Cambillau, Christian; Scaloni, Andrea; Wang, Guirong; Pelosi, Paolo

    2017-11-14

    The giant panda Ailuropoda melanoleuca belongs to the family of Ursidae; however, it is not carnivorous, feeding almost exclusively on bamboo. Being equipped with a typical carnivorous digestive apparatus, the giant panda cannot get enough energy for an active life and spends most of its time digesting food or sleeping. Feeding and mating are both regulated by odors and pheromones; therefore, a better knowledge of olfaction at the molecular level can help in designing strategies for the conservation of this species. In this context, we have identified the odorant-binding protein (OBP) repertoire of the giant panda and mapped the protein expression in nasal mucus and saliva through proteomics. Four OBPs have been identified in nasal mucus, while the other two were not detected in the samples examined. In particular, AimelOBP3 is similar to a subset of OBPs reported as pheromone carriers in the urine of rodents, saliva of the boar, and seminal fluid of the rabbit. We expressed this protein, mapped its binding specificity, and determined its crystal structure. Structural data guided the design and preparation of three protein mutants bearing single-amino acid replacements in the ligand-binding pocket, for which the corresponding binding affinity spectra were measured. We also expressed AimelOBP5, which is markedly different from AimelOBP3 and complementary in its binding spectrum. By comparing our binding data with the structures of bamboo volatiles and those of typical mammalian pheromones, we formulate hypotheses on which may be the most relevant semiochemicals for the giant panda.

  11. cDNA, genomic sequence cloning, and overexpression of EIF1 from the giant panda (Ailuropoda Melanoleuca) and the black bear (Ursus Thibetanus Mupinensis).

    Science.gov (United States)

    Hou, Wan-ru; Tang, Yun; Hou, Yi-ling; Song, Yan; Zhang, Tian; Wu, Guang-fu

    2010-07-01

    Eukaryotic initiation factor (eIF) EIF1 is a universally conserved translation factor that is involved in translation initiation site selection. The cDNA and the genomic sequences of EIF1 were cloned successfully from the giant panda (Ailuropoda melanoleuca) and the black bear (Ursus thibetanus mupinensis) using reverse transcription polymerase chain reaction (RT-PCR) technology and touchdown-polymerase chain reaction, respectively. The cDNAs of the EIF1 cloned from the giant panda and the black bear are 418 bp in size, containing an open reading frame (ORF) of 342 bp encoding 113 amino acids. The length of the genomic sequence of the giant panda is 1909 bp, which contains four exons and three introns. The length of the genomic sequence of the black bear is 1897 bp, which also contains four exons and three introns. Sequence alignment indicates a high degree of homology to those of Homo sapiens, Mus musculus, Rattus norvegicus, and Bos Taurus at both amino acid and DNA levels. Topology prediction shows there are one N-glycosylation site, two Casein kinase II phosphorylation sites, and a Amidation site in the EIF1 protein of the giant panda and black bear. In addition, there is a protein kinase C phosphorylation site in EIF1 of the giant panda. The giant panda and the black bear EIF1 genes were overexpressed in E. coli BL21. The results indicated that the both EIF1 fusion proteins with the N-terminally His-tagged form gave rise to the accumulation of two expected 19 kDa polypeptide. The expression products obtained could be used to purify the proteins and study their function further.

  12. A genome-wide survey on basic helix-loop-helix transcription factors in giant panda.

    Directory of Open Access Journals (Sweden)

    Chunwang Dang

    Full Text Available The giant panda (Ailuropoda melanoleuca is a critically endangered mammalian species. Studies on functions of regulatory proteins involved in developmental processes would facilitate understanding of specific behavior in giant panda. The basic helix-loop-helix (bHLH proteins play essential roles in a wide range of developmental processes in higher organisms. bHLH family members have been identified in over 20 organisms, including fruit fly, zebrafish, mouse and human. Our present study identified 107 bHLH family members being encoded in giant panda genome. Phylogenetic analyses revealed that they belong to 44 bHLH families with 46, 25, 15, 4, 11 and 3 members in group A, B, C, D, E and F, respectively, while the remaining 3 members were assigned into "orphan". Compared to mouse, the giant panda does not encode seven bHLH proteins namely Beta3a, Mesp2, Sclerax, S-Myc, Hes5 (or Hes6, EBF4 and Orphan 1. These results provide useful background information for future studies on structure and function of bHLH proteins in the regulation of giant panda development.

  13. Why does the giant panda eat bamboo? A comparative analysis of appetite-reward-related genes among mammals.

    Directory of Open Access Journals (Sweden)

    Ke Jin

    Full Text Available BACKGROUND: The giant panda has an interesting bamboo diet unlike the other species in the order of Carnivora. The umami taste receptor gene T1R1 has been identified as a pseudogene during its genome sequencing project and confirmed using a different giant panda sample. The estimated mutation time for this gene is about 4.2 Myr. Such mutation coincided with the giant panda's dietary change and also reinforced its herbivorous life style. However, as this gene is preserved in herbivores such as cow and horse, we need to look for other reasons behind the giant panda's diet switch. METHODOLOGY/PRINCIPAL FINDINGS: Since taste is part of the reward properties of food related to its energy and nutrition contents, we did a systematic analysis on those genes involved in the appetite-reward system for the giant panda. We extracted the giant panda sequence information for those genes and compared with the human sequence first and then with seven other species including chimpanzee, mouse, rat, dog, cat, horse, and cow. Orthologs in panda were further analyzed based on the coding region, Kozak consensus sequence, and potential microRNA binding of those genes. CONCLUSIONS/SIGNIFICANCE: Our results revealed an interesting dopamine metabolic involvement in the panda's food choice. This finding suggests a new direction for molecular evolution studies behind the panda's dietary switch.

  14. ANIMAL PHYSIOLOGY. Exceptionally low daily energy expenditure in the bamboo-eating giant panda.

    Science.gov (United States)

    Nie, Yonggang; Speakman, John R; Wu, Qi; Zhang, Chenglin; Hu, Yibo; Xia, Maohua; Yan, Li; Hambly, Catherine; Wang, Lu; Wei, Wei; Zhang, Jinguo; Wei, Fuwen

    2015-07-10

    The carnivoran giant panda has a specialized bamboo diet, to which its alimentary tract is poorly adapted. Measurements of daily energy expenditure across five captive and three wild pandas averaged 5.2 megajoules (MJ)/day, only 37.7% of the predicted value (13.8 MJ/day). For the wild pandas, the mean was 6.2 MJ/day, or 45% of the mammalian expectation. Pandas achieve this exceptionally low expenditure in part by reduced sizes of several vital organs and low physical activity. In addition, circulating levels of thyroid hormones thyroxine (T4) and triiodothyronine (T3) averaged 46.9 and 64%, respectively, of the levels expected for a eutherian mammal of comparable size. A giant panda-unique mutation in the DUOX2 gene, critical for thyroid hormone synthesis, might explain these low thyroid hormone levels. A combination of morphological, behavioral, physiological, and genetic adaptations, leading to low energy expenditure, likely enables giant pandas to survive on a bamboo diet. Copyright © 2015, American Association for the Advancement of Science.

  15. Risk Assessment of Canine Distemper in the Distribution Area of Giant Panda in Sichuan, Shaanxi and Gansu Provinces, China

    Directory of Open Access Journals (Sweden)

    Weigeng Shao

    2017-11-01

    Full Text Available Giant panda is the world-class precious endangered species, facing the canine distemper and other important infectious diseases on its wild and captive population of a serious threat. In this study, we used MaxEnt model and combined with ArcGIS analysis to predict the potential risk of canine distemper to giant panda habitat in Sichuan, Gansu and Shaanxi Provinces, China. The results showed that 35.05% and 19.47% of the distribution areas of the giant pandas were in the high risk and medium risk of canine distemper, respectively. The canine distemper pose a great risk to the healthy survival of giant pandas in China. In future, epidemic prevention, vaccine development and application of wild animals should be enhanced so as to effectively protect the giant panda.

  16. Giant panda (Ailuropoda melanoleuca) sperm morphometry and function after repeated freezing and thawing.

    Science.gov (United States)

    Santiago-Moreno, J; Esteso, M C; Pradiee, J; Castaño, C; Toledano-Díaz, A; O'Brien, E; Lopez-Sebastián, A; Martínez-Nevado, E; Delclaux, M; Fernández-Morán, J; Zhihe, Z

    2016-05-01

    This work examines the effects of subsequent cycles of freezing-thawing on giant panda (Ailuropoda melanoleuca) sperm morphometry and function, and assesses whether density-gradient centrifugation (DGC) can increase the number of freezing-thawing cycles this sperm can withstand. A sperm sample was collected by electroejaculation from a mature giant panda and subjected to five freezing-thawing cycles. Although repeated freezing-thawing negatively affected (P 60% of the sperm cells in both treatments showed acrosome integrity even after the fifth freezing cycle. In fresh semen, the sperm head length was 4.7 μm, the head width 3.6 μm, area 14.3 μm(2) and perimeter length 14.1 μm. The present results suggest that giant panda sperm trends to be resistant to repeated freezing-thawing, even without DGC selection. © 2015 Blackwell Verlag GmbH.

  17. Canine distemper viral infection threatens the giant panda population in China

    Science.gov (United States)

    Jin, Yipeng; Zhang, Xinke; Ma, Yisheng; Qiao, Yanchao; Liu, Xiaobin; Zhao, Kaihui; Zhang, Chenglin; Lin, Degui; Fu, Xuelian; Xu, Xinrong; Wang, Yiwei; Wang, Huanan

    2017-01-01

    We evaluated exposure to canine distemper virus (CDV) in eight wild giant pandas (Ailuropoda melanoleuca) and 125 unvaccinated domestic dogs living in and around Foping National Nature Reserve (FNNR), China. Seventy-two percent of unvaccinated domestic dogs (mixed breed) had neutralizing antibodies for CDV due to exposure to the disease. The eight wild giant pandas were naïve to CDV and carried no positive antibody titer. RT-PCR assays for hemagglutinin (H) gene confirmed the presence of CDV in 31 clinically ill dogs from several areas near FNNR. Genomic sequence analysis showed that the 21 canine CDV were highly homologous to each other and belonged to the Asian-1 genotype. They showed high homology with the GP01 strain sequenced from a fatally infected giant panda, suggesting cross-species infection. Observational and GPS tracking data revealed home range overlap in pandas and dogs around FNNR. This study shows that CDV is endemic in domestic dogs near FNNR and that cross-species CDV infection threatens the wild giant panda population. PMID:29371956

  18. Kretzoiarctos gen. nov., the oldest member of the giant panda clade.

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    Juan Abella

    Full Text Available The phylogenetic position of the giant panda, Ailuropoda melanoleuca (Carnivora: Ursidae: Ailuropodinae, has been one of the most hotly debated topics by mammalian biologists and paleontologists during the last century. Based on molecular data, it is currently recognized as a true ursid, sister-taxon of the remaining extant bears, from which it would have diverged by the Early Miocene. However, from a paleobiogeographic and chronological perspective, the origin of the giant panda lineage has remained elusive due to the scarcity of the available Miocene fossil record. Until recently, the genus Ailurarctos from the Late Miocene of China (ca. 8-7 mya was recognized as the oldest undoubted member of the Ailuropodinae, suggesting that the panda lineage might have originated from an Ursavus ancestor. The role of the purported ailuropodine Agriarctos, from the Miocene of Europe, in the origins of this clade has been generally dismissed due to the paucity of the available material. Here, we describe a new ailuropodine genus, Kretzoiarctos gen. nov., based on remains from two Middle Miocene (ca. 12-11 Ma Spanish localities. A cladistic analysis of fossil and extant members of the Ursoidea confirms the inclusion of the new genus into the Ailuropodinae. Moreover, Kretzoiarctos precedes in time the previously-known, Late Miocene members of the giant panda clade from Eurasia (Agriarctos and Ailurarctos. The former can be therefore considered the oldest recorded member of the giant panda lineage, which has significant implications for understanding the origins of this clade from a paleobiogeographic viewpoint.

  19. Kretzoiarctos gen. nov., the oldest member of the giant panda clade.

    Science.gov (United States)

    Abella, Juan; Alba, David M; Robles, Josep M; Valenciano, Alberto; Rotgers, Cheyenn; Carmona, Raül; Montoya, Plinio; Morales, Jorge

    2012-01-01

    The phylogenetic position of the giant panda, Ailuropoda melanoleuca (Carnivora: Ursidae: Ailuropodinae), has been one of the most hotly debated topics by mammalian biologists and paleontologists during the last century. Based on molecular data, it is currently recognized as a true ursid, sister-taxon of the remaining extant bears, from which it would have diverged by the Early Miocene. However, from a paleobiogeographic and chronological perspective, the origin of the giant panda lineage has remained elusive due to the scarcity of the available Miocene fossil record. Until recently, the genus Ailurarctos from the Late Miocene of China (ca. 8-7 mya) was recognized as the oldest undoubted member of the Ailuropodinae, suggesting that the panda lineage might have originated from an Ursavus ancestor. The role of the purported ailuropodine Agriarctos, from the Miocene of Europe, in the origins of this clade has been generally dismissed due to the paucity of the available material. Here, we describe a new ailuropodine genus, Kretzoiarctos gen. nov., based on remains from two Middle Miocene (ca. 12-11 Ma) Spanish localities. A cladistic analysis of fossil and extant members of the Ursoidea confirms the inclusion of the new genus into the Ailuropodinae. Moreover, Kretzoiarctos precedes in time the previously-known, Late Miocene members of the giant panda clade from Eurasia (Agriarctos and Ailurarctos). The former can be therefore considered the oldest recorded member of the giant panda lineage, which has significant implications for understanding the origins of this clade from a paleobiogeographic viewpoint.

  20. Canine distemper viral infection threatens the giant panda population in China.

    Science.gov (United States)

    Jin, Yipeng; Zhang, Xinke; Ma, Yisheng; Qiao, Yanchao; Liu, Xiaobin; Zhao, Kaihui; Zhang, Chenglin; Lin, Degui; Fu, Xuelian; Xu, Xinrong; Wang, Yiwei; Wang, Huanan

    2017-12-26

    We evaluated exposure to canine distemper virus (CDV) in eight wild giant pandas ( Ailuropoda melanoleuca ) and 125 unvaccinated domestic dogs living in and around Foping National Nature Reserve (FNNR), China. Seventy-two percent of unvaccinated domestic dogs (mixed breed) had neutralizing antibodies for CDV due to exposure to the disease. The eight wild giant pandas were naïve to CDV and carried no positive antibody titer. RT-PCR assays for hemagglutinin ( H ) gene confirmed the presence of CDV in 31 clinically ill dogs from several areas near FNNR. Genomic sequence analysis showed that the 21 canine CDV were highly homologous to each other and belonged to the Asian-1 genotype. They showed high homology with the GP01 strain sequenced from a fatally infected giant panda, suggesting cross-species infection. Observational and GPS tracking data revealed home range overlap in pandas and dogs around FNNR. This study shows that CDV is endemic in domestic dogs near FNNR and that cross-species CDV infection threatens the wild giant panda population.

  1. Estimation of the growth curve and heritability of the growth rate for giant panda (Ailuropoda melanoleuca) cubs.

    Science.gov (United States)

    Che, T D; Wang, C D; Jin, L; Wei, M; Wu, K; Zhang, Y H; Zhang, H M; Li, D S

    2015-03-27

    Giant panda cubs have a low survival rate during the newborn and early growth stages. However, the growth and developmental parameters of giant panda cubs during the early lactation stage (from birth to 6 months) are not well known. We examined the growth and development of giant panda cubs by the Chapman growth curve model and estimated the heritability of the maximum growth rate at the early lactation stage. We found that 83 giant panda cubs reached their maximum growth rate at approximately 75-120 days after birth. The body weight of cubs at 75 days was 4285.99 g. Furthermore, we estimated that the heritability of the maximum growth rate was moderate (h(2) = 0.38). Our study describes the growth and development of giant panda cubs at the early lactation stage and provides valuable growth benchmarks. We anticipate that our results will be a starting point for more detailed research on increasing the survival rate of giant panda cubs. Feeding programs for giant panda cubs need further improvement.

  2. Giant panda BAC library construction and assembly of a 650-kb contig spanning major histocompatibility complex class II region

    Directory of Open Access Journals (Sweden)

    Pan Hui-Juan

    2007-09-01

    Full Text Available Abstract Background Giant panda is rare and endangered species endemic to China. The low rates of reproductive success and infectious disease resistance have severely hampered the development of captive and wild populations of the giant panda. The major histocompatibility complex (MHC plays important roles in immune response and reproductive system such as mate choice and mother-fetus bio-compatibility. It is thus essential to understand genetic details of the giant panda MHC. Construction of a bacterial artificial chromosome (BAC library will provide a new tool for panda genome physical mapping and thus facilitate understanding of panda MHC genes. Results A giant panda BAC library consisting of 205,800 clones has been constructed. The average insert size was calculated to be 97 kb based on the examination of 174 randomly selected clones, indicating that the giant panda library contained 6.8-fold genome equivalents. Screening of the library with 16 giant panda PCR primer pairs revealed 6.4 positive clones per locus, in good agreement with an expected 6.8-fold genomic coverage of the library. Based on this BAC library, we constructed a contig map of the giant panda MHC class II region from BTNL2 to DAXX spanning about 650 kb by a three-step method: (1 PCR-based screening of the BAC library with primers from homologous MHC class II gene loci, end sequences and BAC clone shotgun sequences, (2 DNA sequencing validation of positive clones, and (3 restriction digest fingerprinting verification of inter-clone overlapping. Conclusion The identifications of genes and genomic regions of interest are greatly favored by the availability of this giant panda BAC library. The giant panda BAC library thus provides a useful platform for physical mapping, genome sequencing or complex analysis of targeted genomic regions. The 650 kb sequence-ready BAC contig map of the giant panda MHC class II region from BTNL2 to DAXX, verified by the three-step method, offers a

  3. Prolonged transition time between colostrum and mature milk in a bear, the giant panda, Ailuropoda melanoleuca

    Science.gov (United States)

    Griffiths, Kate; Hou, Rong; Wang, Hairui; Zhang, Zhihe; Zhang, Liang; Zhang, Tong; Watson, David G.; Burchmore, Richard J. S.; Loeffler, I. Kati; Kennedy, Malcolm W.

    2015-01-01

    Bears produce the most altricial neonates of any placental mammal. We hypothesized that the transition from colostrum to mature milk in bears reflects a temporal and biochemical adaptation for altricial development and immune protection. Comparison of bear milks with milks of other eutherians yielded distinctive protein profiles. Proteomic and metabolomic analysis of serial milk samples collected from six giant pandas showed a prolonged transition from colostrum to main-phase lactation over approximately 30 days. Particularly striking are the persistence or sequential appearance of adaptive and innate immune factors. The endurance of immunoglobulin G suggests an unusual duration of trans-intestinal absorption of maternal antibodies, and is potentially relevant to the underdeveloped lymphoid system of giant panda neonates. Levels of certain milk oligosaccharides known to exert anti-microbial activities and/or that are conducive to the development of neonatal gut microbiomes underwent an almost complete changeover around days 20–30 postpartum, coincident with the maturation of the protein profile. A potential metabolic marker of starvation was detected, the prominence of which may reflect the natural postpartum period of anorexia in giant panda mothers. Early lactation in giant pandas, and possibly in other ursids, appears to be adapted for the unique requirements of unusually altricial eutherian neonates. PMID:26587250

  4. Isolation and Preliminary Screening of a Weissella confusa Strain from Giant Panda (Ailuropoda melanoleuca).

    Science.gov (United States)

    Xiong, Lvchen; Ni, Xueqin; Niu, Lili; Zhou, Yi; Wang, Qiang; Khalique, Abdul; Liu, Qian; Zeng, Yan; Shu, Gang; Pan, Kangcheng; Jing, Bo; Zeng, Dong

    2018-04-13

    Weissella confusa has recently received attention for its probiotic potential. Some W. confusa and Weissella cibaria strains isolated from fermented foods show favorable probiotic effects. However, the probiotic properties of W. confusa isolated from giant panda remain unreported to date. Thus, this study isolated a W. confusa strain from giant panda feces and then investigated its characteristics and probiotic properties. A lactic acid bacteria strain was isolated from giant panda fecal samples. The isolated strain was screened by in vitro probiotic property tests, including in vitro antimicrobial test, antioxidant test, surface hydrophobicity, and stress resistance. On the basis of biochemical identification and 16S rDNA sequencing, the W. confusa strain was identified as BSP201703. This Weissella confusa strain can survive at pH 2 and 0.3% (w/v) concentration of bile salt environment and inhibit common intestinal pathogens. It also possesses an in vitro antioxidant capacity, a high auto-aggregation ability, and a high surface hydrophobicity. BSP201703 might serve as a probiotic to giant pandas.

  5. Cloning and characterization of giant panda (Ailuropoda melanoleuca) IL-18 binding protein.

    Science.gov (United States)

    Yan, Yue; Deng, Jiabo; Niu, Lili; Wang, Qiang; Yu, Jianqiu; Shao, Huanhuan; Cao, Qinghua; Zhang, Yizheng; Tan, Xuemei

    2016-06-01

    The giant panda (Ailuropoda melanoleuca) is an endangered species. Interleukin-18 (IL-18) plays an important role in the innate and adaptive immune responses by inducing IFN-γ. IL-18 has been implicated in the pathogenesis of various diseases. IL-18 binding protein (IL-18BP) is an intrinsic inhibitor of IL-18 that possesses higher affinity to IL-18. In this study, we cloned and characterized IL-18BP in giant panda (AmIL-18BP) from the spleen. The amino acid sequence of giant panda IL-18BP ORF shared about 65% identities with other species. To evaluate the effects of AmIL-18BP on the immune responses, we expressed the recombinant AmIL-18BP in Escherichia coli BL21 (DE3).The fusing protein PET-AmIL-18BP was purified by nickel affinity column chromatography. The biological function of purified PET-AmIL-18BP was determined on mice splenocyte by qRT-PCR. The results showed that AmIL-18BP was functional and could significantly reduce IFN-γ production in murine splenocytes. These results will facilitate the study of protecting giant panda on etiology and immunology. Copyright © 2016 Elsevier Ltd. All rights reserved.

  6. Prolonged transition time between colostrum and mature milk in a bear, the giant panda, Ailuropoda melanoleuca.

    Science.gov (United States)

    Griffiths, Kate; Hou, Rong; Wang, Hairui; Zhang, Zhihe; Zhang, Liang; Zhang, Tong; Watson, David G; Burchmore, Richard J S; Loeffler, I Kati; Kennedy, Malcolm W

    2015-10-01

    Bears produce the most altricial neonates of any placental mammal. We hypothesized that the transition from colostrum to mature milk in bears reflects a temporal and biochemical adaptation for altricial development and immune protection. Comparison of bear milks with milks of other eutherians yielded distinctive protein profiles. Proteomic and metabolomic analysis of serial milk samples collected from six giant pandas showed a prolonged transition from colostrum to main-phase lactation over approximately 30 days. Particularly striking are the persistence or sequential appearance of adaptive and innate immune factors. The endurance of immunoglobulin G suggests an unusual duration of trans-intestinal absorption of maternal antibodies, and is potentially relevant to the underdeveloped lymphoid system of giant panda neonates. Levels of certain milk oligosaccharides known to exert anti-microbial activities and/or that are conducive to the development of neonatal gut microbiomes underwent an almost complete changeover around days 20-30 postpartum, coincident with the maturation of the protein profile. A potential metabolic marker of starvation was detected, the prominence of which may reflect the natural postpartum period of anorexia in giant panda mothers. Early lactation in giant pandas, and possibly in other ursids, appears to be adapted for the unique requirements of unusually altricial eutherian neonates.

  7. A Mathematical Model with Pulse Effect for Three Populations of the Giant Panda and Two Kinds of Bamboo

    Directory of Open Access Journals (Sweden)

    Xiang-yun Shi

    2013-01-01

    Full Text Available A mathematical model for the relationship between the populations of giant pandas and two kinds of bamboo is established. We use the impulsive perturbations to take into account the effect of a sudden collapse of bamboo as a food source. We show that this system is uniformly bounded. Using the Floquet theory and comparison techniques of impulsive equations, we find conditions for the local and global stabilities of the giant panda-free periodic solution. Moreover, we obtain sufficient conditions for the system to be permanent. The results provide a theoretical basis for giant panda habitat protection.

  8. Use of urinary 13,14, dihydro-15-keto-prostaglandin F2α (PGFM concentrations to diagnose pregnancy and predict parturition in the giant panda (Ailuropoda melanolecua.

    Directory of Open Access Journals (Sweden)

    Beth M Roberts

    Full Text Available Pregnancy determination is difficult in the giant panda (Ailuropoda melanolecua, representing a challenge for ex situ conservation efforts. Research in other species experiencing pseudopregnancy indicates that urinary/fecal concentrations of 13,14, dihydro-15-keto-prostaglandin F2α (PGFM can accurately determine pregnancy status. Our objective was to determine if urinary PGFM concentrations are associated with pregnancy status in the giant panda. Urinary PGFM concentrations were measured in female giant pandas (n = 4 throughout gestation (n = 6 and pseudopregnancy (n = 4 using a commercial enzyme immunoassay. Regardless of pregnancy status, PGFM excretion followed a predictable pattern: 1 baseline concentrations for 11-19 weeks following ovulation; 2 a modest, initial peak 14-36 days after the start of the secondary urinary progestagen rise; 3 a subsequent period of relatively low concentrations; and 4 a large, terminal peak at the end of the luteal phase. Pregnant profiles were distinguished by an earlier initial peak (P = 0.024, higher inter-peak concentrations (P < 0.001, and a larger terminal peak (P = 0.003 compared to pseudopregnancy profiles. Parturition occurred 23 to 25 days from the initial PGFM surge and within 24 hours of the start of the terminal increase. These pattern differences indicate that urinary PGFM monitoring can be used to predict pregnancy status and time parturition in the giant panda. Furthermore, this is the only species known to exhibit a significant PGFM increase during pseudopregnancy, suggesting a unique physiological mechanism for regulating the end of the luteal phase in the giant panda.

  9. Immobilization of wild giant panda (Ailuropoda melanoleuca) with dexmedetomidine-tiletamine-zolazepam.

    Science.gov (United States)

    Jin, Yipeng; Qiao, Yanchao; Liu, Xiaobin; Pu, Tianchun; Xu, Hongqian; Lin, Degui

    2016-05-01

    To assess the effects and utility of dexmedetomidine combined with tiletamine and zolazepam (dexMTZ) to immobilize the wild giant panda. Prospective clinical study. Seven giant pandas (Ailuropoda melanoleuca), five males and two females, aged 7-20 years and weighing 69.2-132.9 kg. Once an animal was located, prior data on the individual was reviewed and the panda's previously estimated body weight was used to calculate the volumes of drugs to administer: dexmedetomidine (dexM; 8 μg kg(-1) ; 0.5 mg mL(-1) ) and tiletamine-zolazepam (TZ; 2 mg kg(-1) ; 50 mg mL(-1) ). The mixture was injected intramuscularly (IM) using the Dan-Inject pistol system. When the panda was immobilized, it was weighed, a physical examination was performed and a blood sample collected. Every 5 minutes, the heart rate (HR), respiratory rate (fR ), rectal temperature (T), noninvasive systolic arterial pressure (SAP), capillary refill time (CRT), mucous membrane color and pulse quality were recorded. After all procedures had been completed, atipamezole (40 μg kg(-1) ) was injected IM. A single injection of dexMTZ resulted in the immobilization of all seven giant pandas. The median (range) of anesthetic agents administered was dexM 8.4 μg kg(-1) (7.3-10.5 μg kg(-1) ) and TZ 2.0 mg kg(-1) (1.8-2.5 mg kg(-1) ). The palpebral reflex was lost 8 (7-12) minutes after the injection. Most of the physiological variables remained in the acceptable range. All procedures were completed in approximately 1 hour. Six out of the seven (85.7%) giant pandas recovered smoothly; one panda had a rough recovery. DexMTZ produced a satisfactory immobilization and a smooth recovery for wild giant pandas while allowing approximately 55 minutes for planned noninvasive procedures. © 2015 Association of Veterinary Anaesthetists and the American College of Veterinary Anesthesia and Analgesia.

  10. Transcriptome-Derived Tetranucleotide Microsatellites and Their Associated Genes from the Giant Panda (Ailuropoda melanoleuca).

    Science.gov (United States)

    Song, Xuhao; Shen, Fujun; Huang, Jie; Huang, Yan; Du, Lianming; Wang, Chengdong; Fan, Zhenxin; Hou, Rong; Yue, Bisong; Zhang, Xiuyue

    2016-09-01

    Recently, an increasing number of microsatellites or simple sequence repeats (SSRs) have been found and characterized from transcriptomes. Such SSRs can be employed as putative functional markers to easily tag corresponding genes, which play an important role in biomedical studies and genetic analysis. However, the transcriptome-derived SSRs for giant panda (Ailuropoda melanoleuca) are not yet available. In this work, we identified and characterized 20 tetranucleotide microsatellite loci from a transcript database generated from the blood of giant panda. Furthermore, we assigned their predicted transcriptome locations: 16 loci were assigned to untranslated regions (UTRs) and 4 loci were assigned to coding regions (CDSs). Gene identities of 14 transcripts contained corresponding microsatellites were determined, which provide useful information to study the potential contribution of SSRs to gene regulation in giant panda. The polymorphic information content (PIC) values ranged from 0.293 to 0.789 with an average of 0.603 for the 16 UTRs-derived SSRs. Interestingly, 4 CDS-derived microsatellites developed in our study were also polymorphic, and the instability of these 4 CDS-derived SSRs was further validated by re-genotyping and sequencing. The genes containing these 4 CDS-derived SSRs were embedded with various types of repeat motifs. The interaction of all the length-changing SSRs might provide a way against coding region frameshift caused by microsatellite instability. We hope these newly gene-associated biomarkers will pave the way for genetic and biomedical studies for giant panda in the future. In sum, this set of transcriptome-derived markers complements the genetic resources available for giant panda. © The American Genetic Association. 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  11. Cranial shape transformation in the evolution of the giant panda ( Ailuropoda melanoleuca)

    Science.gov (United States)

    Figueirido, Borja; Palmqvist, Paul; Pérez-Claros, Juan A.; Dong, Wei

    2011-02-01

    In this study, landmark-based methods of geometric morphometrics are used for investigating the main aspects of cranial shape transformation in the evolution of the giant panda, Ailuropoda melanoleuca. Specifically, we explore if the highly derived cranial adaptations for bamboo feeding of the living panda were developed early in the panda's lineage. Results obtained show that the overall cranial morphologies of the oldest known panda, the "pygmy" Ailuropoda microta, and the late Pleistocene Ailuropoda baconi are both very similar to that of their closest living relative, A. melanoleuca, which agrees with a previous proposal based on qualitative criteria. However, we also describe several differences between the crania of A. microta, A. baconi, and A. melanoleuca, including the development of the postorbital process, the orientation of the occipital region, and the expansion of the braincase. As a result, the cranial morphology of A. microta shows a less specialized morphology toward a fibrous and durophagous diet compared to the giant panda. These results are confirmed by a comparative analysis of the dimensions of the upper teeth in bears, which has revealed differences in relative tooth size between A. microta and A. melanoleuca, most probably as a result of mosaic evolution. Therefore, we conclude that cranial shape did not remain essentially uniform in the Ailuropoda lineage, as previously thought, but underwent a number of changes during more than 2 Myr.

  12. How do two giant panda populations adapt to their habitats in the Qinling and Qionglai Mountains, China

    NARCIS (Netherlands)

    Liu, Xiaoji; Wang, Tiejun; Wang, Ting; Skidmore, A.K.; Songer, M.

    2015-01-01

    The spatial separation of the Qinling Mountains from the western mountains has caused morphological and genetic distinctions of giant pandas. Could this separation also cause the pandas’ behavior change? In this research, we focused on the pandas’ movement pattern and selected two wild panda groups

  13. Population genetics of Enterocytozoon bieneusi in captive giant pandas of China.

    Science.gov (United States)

    Li, Wei; Song, Yuan; Zhong, Zhijun; Huang, Xiangming; Wang, Chengdong; Li, Caiwu; Yang, Haidi; Liu, Haifeng; Ren, Zhihua; Lan, Jingchao; Wu, Kongju; Peng, Guangneng

    2017-10-18

    Most studies on Enterocytozoon bieneusi are conducted based on the internal transcribed spacer (ITS) region of the rRNA gene, whereas some have examined E. bieneusi population structures. Currently, the population genetics of this pathogen in giant panda remains unknown. The objective of this study was to determine the E. bieneusi population in captive giant pandas in China. We examined 69 E. bieneusi-positive specimens from captive giant pandas in China using five loci (ITS, MS1, MS3, MS4 and MS7) to infer E. bieneusi population genetics. For multilocus genotype (MLG) analysis of E. bieneusi-positive isolates, the MS1, MS3, MS4, and MS7 microsatellite and minisatellite loci were amplified and sequenced in 48, 45, 50 and 47 specimens, respectively, generating ten, eight, nine and five types. We successfully amplified 36 specimens and sequenced all five loci, forming 24 MLGs. Multilocus sequence analysis revealed a strong and significant linkage disequilibrium (LD), indicating a clonal population. This result was further supported by measurements of pairwise intergenic LD and a standardized index of association (I S A ) from allelic profile data. The analysis in STRUCTURE suggested three subpopulations in E. bieneusi, further confirmed using right's fixation index (F ST ). Subpopulations 1 and 2 exhibited an epidemic structure, whereas subpopulation 3 had a clonal structure. Our results describe E. bieneusi population genetics in giant pandas for the first time, improving the current understanding E. bieneusi epidemiology in the studied region. These data also benefit future studies exploring potential transmission risks from pandas to other animals, including humans.

  14. Construction of a 7-fold BAC library and cytogenetic mapping of 10 genes in the giant panda (Ailuropoda melanoleuca)

    OpenAIRE

    Liu, Wei; Zhao, Yonghui; Liu, Zhaoliang; Zhang, Ying; Lian, Zhengxing; Li, Ning

    2006-01-01

    Abstract Background The giant panda, one of the most primitive carnivores, is an endangered animal. Although it has been the subject of many interesting studies during recent years, little is known about its genome. In order to promote research on this genome, a bacterial artificial chromosome (BAC) library of the giant panda was constructed in this study. Results This BAC library contains 198,844 clones with an average insert size of 108 kb, which represents approximately seven equivalents o...

  15. Adjuvant effects of recombinant giant panda (Ailuropoda melanoleuca) IL-18 on the canine distemper disease vaccine in mice

    OpenAIRE

    YAN, Yue; NIU, Lili; DENG, Jiabo; WANG, Qiang; YU, Jianqiu; ZHANG, Yizheng; WANG, Jianxi; CHEN, Jiao; WEI, Changhe; TAN, Xuemei

    2014-01-01

    Canine distemper virus (CDV) is a morbillivirus known to cause morbidity and mortality in a broad range of animals. Giant pandas (Ailuropoda melanoleuca), especially captive ones, are susceptible to natural infection with CDV. Interleukin-18 (IL-18) is a powerful adjuvant molecule that can enhance the development of antigen-specific immunity and vaccine efficacy. In this study, a giant panda IL-18 gene eukaryotic expression plasmid (pcAmIL-18) was constructed. Female BALB/c mice were muscular...

  16. Analysis of the cytochrome c oxidase subunit 1 (COX1) gene reveals the unique evolution of the giant panda.

    Science.gov (United States)

    Hu, Yao-Dong; Pang, Hui-Zhong; Li, De-Sheng; Ling, Shan-Shan; Lan, Dan; Wang, Ye; Zhu, Yun; Li, Di-Yan; Wei, Rong-Ping; Zhang, He-Min; Wang, Cheng-Dong

    2016-11-05

    As the rate-limiting enzyme of the mitochondrial respiratory chain, cytochrome c oxidase (COX) plays a crucial role in biological metabolism. "Living fossil" giant panda (Ailuropoda melanoleuca) is well-known for its special bamboo diet. In an effort to explore functional variation of COX1 in the energy metabolism behind giant panda's low-energy bamboo diet, we looked at genetic variation of COX1 gene in giant panda, and tested for its selection effect. In 1545 base pairs of the gene from 15 samples, 9 positions were variable and 1 mutation leaded to an amino acid sequence change. COX1 gene produces six haplotypes, nucleotide (pi), haplotype diversity (Hd). In addition, the average number of nucleotide differences (k) is 0.001629±0.001036, 0.8083±0.0694 and 2.517, respectively. Also, dN/dS ratio is significantly below 1. These results indicated that giant panda had a low population genetic diversity, and an obvious purifying selection of the COX1 gene which reduces synthesis of ATP determines giant panda's low-energy bamboo diet. Phylogenetic trees based on the COX1 gene were constructed to demonstrate that giant panda is the sister group of other Ursidae. Copyright © 2016 Elsevier B.V. All rights reserved.

  17. Construction of a 7-fold BAC library and cytogenetic mapping of 10 genes in the giant panda (Ailuropoda melanoleuca

    Directory of Open Access Journals (Sweden)

    Zhang Ying

    2006-11-01

    Full Text Available Abstract Background The giant panda, one of the most primitive carnivores, is an endangered animal. Although it has been the subject of many interesting studies during recent years, little is known about its genome. In order to promote research on this genome, a bacterial artificial chromosome (BAC library of the giant panda was constructed in this study. Results This BAC library contains 198,844 clones with an average insert size of 108 kb, which represents approximately seven equivalents of the giant panda haploid genome. Screening the library with 15 genes and 8 microsatellite markers demonstrates that it is representative and has good genome coverage. Furthermore, ten BAC clones harbouring AGXT, GHR, FSHR, IRBP, SOX14, TTR, BDNF, NT-4, LH and ZFX1 were mapped to 8 pairs of giant panda chromosomes by fluorescence in situ hybridization (FISH. Conclusion This is the first large-insert genomic DNA library for the giant panda, and will contribute to understanding this endangered species in the areas of genome sequencing, physical mapping, gene cloning and comparative genomic studies. We also identified the physical locations of ten genes on their relative chromosomes by FISH, providing a preliminary framework for further development of a high resolution cytogenetic map of the giant panda.

  18. The sequence and de novo assembly of the giant panda genome

    Science.gov (United States)

    Li, Ruiqiang; Fan, Wei; Tian, Geng; Zhu, Hongmei; He, Lin; Cai, Jing; Huang, Quanfei; Cai, Qingle; Li, Bo; Bai, Yinqi; Zhang, Zhihe; Zhang, Yaping; Wang, Wen; Li, Jun; Wei, Fuwen; Li, Heng; Jian, Min; Li, Jianwen; Zhang, Zhaolei; Nielsen, Rasmus; Li, Dawei; Gu, Wanjun; Yang, Zhentao; Xuan, Zhaoling; Ryder, Oliver A.; Leung, Frederick Chi-Ching; Zhou, Yan; Cao, Jianjun; Sun, Xiao; Fu, Yonggui; Fang, Xiaodong; Guo, Xiaosen; Wang, Bo; Hou, Rong; Shen, Fujun; Mu, Bo; Ni, Peixiang; Lin, Runmao; Qian, Wubin; Wang, Guodong; Yu, Chang; Nie, Wenhui; Wang, Jinhuan; Wu, Zhigang; Liang, Huiqing; Min, Jiumeng; Wu, Qi; Cheng, Shifeng; Ruan, Jue; Wang, Mingwei; Shi, Zhongbin; Wen, Ming; Liu, Binghang; Ren, Xiaoli; Zheng, Huisong; Dong, Dong; Cook, Kathleen; Shan, Gao; Zhang, Hao; Kosiol, Carolin; Xie, Xueying; Lu, Zuhong; Zheng, Hancheng; Li, Yingrui; Steiner, Cynthia C.; Lam, Tommy Tsan-Yuk; Lin, Siyuan; Zhang, Qinghui; Li, Guoqing; Tian, Jing; Gong, Timing; Liu, Hongde; Zhang, Dejin; Fang, Lin; Ye, Chen; Zhang, Juanbin; Hu, Wenbo; Xu, Anlong; Ren, Yuanyuan; Zhang, Guojie; Bruford, Michael W.; Li, Qibin; Ma, Lijia; Guo, Yiran; An, Na; Hu, Yujie; Zheng, Yang; Shi, Yongyong; Li, Zhiqiang; Liu, Qing; Chen, Yanling; Zhao, Jing; Qu, Ning; Zhao, Shancen; Tian, Feng; Wang, Xiaoling; Wang, Haiyin; Xu, Lizhi; Liu, Xiao; Vinar, Tomas; Wang, Yajun; Lam, Tak-Wah; Yiu, Siu-Ming; Liu, Shiping; Zhang, Hemin; Li, Desheng; Huang, Yan; Wang, Xia; Yang, Guohua; Jiang, Zhi; Wang, Junyi; Qin, Nan; Li, Li; Li, Jingxiang; Bolund, Lars; Kristiansen, Karsten; Wong, Gane Ka-Shu; Olson, Maynard; Zhang, Xiuqing; Li, Songgang; Yang, Huanming; Wang, Jian; Wang, Jun

    2013-01-01

    Using next-generation sequencing technology alone, we have successfully generated and assembled a draft sequence of the giant panda genome. The assembled contigs (2.25 gigabases (Gb)) cover approximately 94% of the whole genome, and the remaining gaps (0.05 Gb) seem to contain carnivore-specific repeats and tandem repeats. Comparisons with the dog and human showed that the panda genome has a lower divergence rate. The assessment of panda genes potentially underlying some of its unique traits indicated that its bamboo diet might be more dependent on its gut microbiome than its own genetic composition. We also identified more than 2.7 million heterozygous single nucleotide polymorphisms in the diploid genome. Our data and analyses provide a foundation for promoting mammalian genetic research, and demonstrate the feasibility for using next-generation sequencing technologies for accurate, cost-effective and rapid de novo assembly of large eukaryotic genomes. PMID:20010809

  19. Dietary shift and dysbiosis may trigger mucous stools in giant pandas (Ailuropoda melanoleuca

    Directory of Open Access Journals (Sweden)

    Candace L Williams

    2016-05-01

    Full Text Available Dietary shifts can result in dysbiosis between the host and its gastrointestinal tract (GIT microbiota, leading to negative outcomes including inflammation. Giant pandas (Ailuropoda melanoleuca are physiologically classified as carnivores; however, they consume a herbivorous diet with dramatic seasonal feeding shifts and episodes of chronic GIT distress with symptoms including abdominal pain, loss of appetite and the excretion of mucous stools (mucoids. These episodes adversely affect the overall nutritional and health status of giant pandas. Here, we examined the fecal microbiota of two giant pandas’ normal and mucoid stools and compared these microbiota to baseline samples from a season with historically few episodes. To identify the microbiota present, we isolated and sequenced 16S rRNA using next-generation sequencing. Mucoids occurred following a seasonal feeding switch from predominately bamboo culm (stalk to leaves. All fecal samples displayed low diversity and were dominated by bacterial in the phyla Firmicutes and to a lesser extent, the Proteobacteria. Fecal samples immediately prior to mucoid episodes had lower microbial diversity compared to baseline samples, followed by increased diversity in mucoids. Mucoids were mostly comprised of common mucosal-associated taxa including Streptococcus and Leuconostoc species, and exhibited increased abundance for bacteria in the family Pasteurellaceae. Taken together, these findings indicate that diet-induced intestinal dysbiosis in giant pandas likely results in an expulsion of the mucosal lining in the form of mucoids. We suggest that these occurrences serve to reset their GIT microbiota, as giant pandas have retained a carnivorous GIT anatomy while shifting to an herbivorous diet.

  20. The bamboo-eating giant panda harbors a carnivore-like gut microbiota, with excessive seasonal variations.

    Science.gov (United States)

    Xue, Zhengsheng; Zhang, Wenping; Wang, Linghua; Hou, Rong; Zhang, Menghui; Fei, Lisong; Zhang, Xiaojun; Huang, He; Bridgewater, Laura C; Jiang, Yi; Jiang, Chenglin; Zhao, Liping; Pang, Xiaoyan; Zhang, Zhihe

    2015-05-19

    The giant panda evolved from omnivorous bears. It lives on a bamboo-dominated diet at present, but it still retains a typical carnivorous digestive system and is genetically deficient in cellulose-digesting enzymes. To find out whether this endangered mammalian species, like other herbivores, has successfully developed a gut microbiota adapted to its fiber-rich diet, we conducted a 16S rRNA gene-based large-scale structural profiling of the giant panda fecal microbiota. Forty-five captive individuals were sampled in spring, summer, and late autumn within 1 year. Significant intraindividual variations in the diversity and structure of gut microbiota across seasons were observed in this population, which were even greater than the variations between individuals. Compared with published data sets involving 124 gut microbiota profiles from 54 mammalian species, these giant pandas, together with 9 captive and 7 wild individuals investigated previously, showed extremely low gut microbiota diversity and an overall structure that diverged from those of nonpanda herbivores but converged with those of carnivorous and omnivorous bears. The giant panda did not harbor putative cellulose-degrading phylotypes such as Ruminococcaceae and Bacteroides bacteria that are typically enriched in other herbivores, but instead, its microbiota was dominated by Escherichia/Shigella and Streptococcus bacteria. Members of the class Clostridia were common and abundant in the giant panda gut microbiota, but most of the members present were absent in other herbivores and were not phylogenetically related with known cellulolytic lineages. Therefore, the giant panda appears not to have evolved a gut microbiota compatible with its newly adopted diet, which may adversely influence the coevolutionary fitness of this herbivore. The giant panda, an endangered mammalian species endemic to western China, is well known for its unique bamboo diet. Unlike other herbivores that have successfully evolved

  1. A novel endogenous betaretrovirus group characterized from polar bears (Ursus maritimus) and giant pandas (Ailuropoda melanoleuca)

    DEFF Research Database (Denmark)

    Mayer, Jens; Tsangaras, Kyriakos; Heeger, Felix

    2013-01-01

    . Molecular dating indicates the group originated before the divergence of bears from a common ancestor but is not present in all carnivores. Closely related sequences were identified in the giant panda (Ailuropoda melanoleuca) and characterized from its genome. We have designated the polar bear and giant...... panda sequences U. maritimus endogenous retrovirus (UmaERV) and A. melanoleuca endogenous retrovirus (AmeERV), respectively. Phylogenetic analysis demonstrated that the bear virus group is nested within the HERV-K supergroup among bovine and bat endogenous retroviruses suggesting a complex evolutionary......Transcriptome analysis of polar bears (Ursus maritimus) yielded sequences with highest similarity to the human endogenous retrovirus group HERV-K(HML-2). Further analysis of the polar bear draft genome identified an endogenous betaretrovirus group comprising 26 proviral copies and 231 solo LTRs...

  2. A novel endogenous betaretrovirus group characterized from polar bears (Ursus maritimus) and giant pandas (Ailuropoda melanoleuca)

    OpenAIRE

    Mayer, Jens; Tsangaras, Kyriakos; Heeger, Felix; Ávila-Arcos, Maria; Stenglein, Mark D.; Chen, Wei; Sun, Wei; Mazzoni, Camila; Osterrieder, Nikolaus; Greenwood, Alex D.

    2013-01-01

    Transcriptome analysis of polar bears (Ursus maritimus) yielded sequences with highest similarity to the human endogenous retrovirus group HERV-K(HML-2). Further analysis of the polar bear draft genome identified an endogenous betaretrovirus group comprising 26 proviral copies and 231 solo LTRs. Molecular dating indicates the group originated before the divergence of bears from a common ancestor but is not present in all carnivores. Closely related sequences were identified in the giant panda...

  3. Prolonged transition time between colostrum and mature milk in a bear, the giant panda, Ailuropoda melanoleuca

    OpenAIRE

    Griffiths, Katharine; Rong, Hou; Wang, Hairui; Zhang, Zhihe; Zhang, Tong; Watson, David G.; Burchmore, Richard; Loeffler, I.Kati; Kennedy, Malcolm

    2015-01-01

    Bears produce the most altricial neonates of any placental mammal. We hypothesized that the transition from colostrum to mature milk in bears reflects a temporal and biochemical adaptation for altricial development and immune protection. Comparison of bear milks with milks of other eutherians yielded distinctive protein profiles. Proteomic and metabolomic analysis of serial milk samples collected from six giant pandas showed a prolonged transition from colostrum to main-phase lactation over a...

  4. Distinctive diet-tissue isotopic discrimination factors derived from the exclusive bamboo-eating giant panda.

    Science.gov (United States)

    Han, Han; Wei, Wei; Nie, Yonggang; Zhou, Wenliang; Hu, Yibo; Wu, Qi; Wei, Fuwen

    2016-11-01

    Stable isotope analysis is very useful in animal ecology, especially in diet reconstruction and trophic studies. Differences in isotope ratios between consumers and their diet, termed discrimination factors, are essential for studies of stable isotope ecology and are species-specific and tissue-specific. Given the specialized bamboo diet and clear foraging behavior, here, we calculated discrimination factors for carbon and nitrogen isotopes from diet to tissues (tooth enamel, hair keratin and bone collagen) for the giant panda (Ailuropoda melanoleuca), a species derived from meat-eating ancestors. Our results showed that carbon discrimination factor obtained from giant panda tooth enamel (ε 13 C diet-enamel = 10.0‰) and nitrogen discrimination factors from hair keratin (Δ 15 N diet-hair = 2.2‰) and bone collagen (Δ 15 N diet-collagen = 2.3‰) were lower, and carbon discrimination factors from hair keratin (Δ 13 C diet-hair = 5.0‰) and bone collagen (Δ 13 C diet-collagen = 6.1‰) were higher than those of other mammalian carnivores, omnivores and herbivores. Such distinctive values are likely the result of a low-nutrient and specialized bamboo diet, carnivore-like digestive system and exceptionally low metabolism in giant pandas. © 2016 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

  5. Fecal near infrared spectroscopy to discriminate physiological status in giant pandas.

    Directory of Open Access Journals (Sweden)

    Erin E Wiedower

    Full Text Available Giant panda (Ailuropoda melanoleuca monitoring and research often require accurate estimates of population size and density. However, obtaining these estimates has been challenging. Innovative technologies, such as fecal near infrared reflectance spectroscopy (FNIRS, may be used to differentiate between sex, age class, and reproductive status as has been shown for several other species. The objective of this study was to determine if FNIRS could be similarly used for giant panda physiological discriminations. Based on samples from captive animals in four U.S. zoos, FNIRS calibrations correctly identified 78% of samples from adult males, 81% from adult females, 85% from adults, 89% from juveniles, 75% from pregnant and 70% from non-pregnant females. However, diet had an impact on the success of the calibrations. When diet was controlled for plant part such that "leaf only" feces were evaluated, FNIRS calibrations correctly identified 93% of samples from adult males and 95% from adult females. These data show that FNIRS has the potential to differentiate between the sex, age class, and reproductive status in the giant panda and may be applicable for surveying wild populations.

  6. Comparative analysis and molecular characterization of a gene BANF1 encoded a DNA-binding protein during mitosis from the Giant Panda and Black Bear.

    Science.gov (United States)

    Zeng, Yichun; Hou, Yi-Ling; Ding, Xiang; Hou, Wan-Ru; Li, Jian

    2014-01-01

    Barrier to autointegration factor 1 (BANF1) is a DNA-binding protein found in the nucleus and cytoplasm of eukaryotic cells that functions to establish nuclear architecture during mitosis. The cDNA and the genomic sequence of BANF1 were cloned from the Giant Panda (Ailuropoda melanoleuca) and Black Bear (Ursus thibetanus mupinensis) using RT-PCR technology and Touchdown-PCR, respectively. The cDNA of the BANF1 cloned from Giant Panda and Black Bear is 297 bp in size, containing an open reading frame of 270 bp encoding 89 amino acids. The length of the genomic sequence from Giant Panda is 521 bp, from Black Bear is 536 bp, which were found both to possess 2 exons. Alignment analysis indicated that the nucleotide sequence and the deduced amino acid sequence are highly conserved to some mammalian species studied. Topology prediction showed there is one Protein kinase C phosphorylation site, one Casein kinase II phosphorylation site, one Tyrosine kinase phosphorylation site, one N-myristoylation site, and one Amidation site in the BANF1 protein of the Giant Panda, and there is one Protein kinase C phosphorylation site, one Tyrosine kinase phosphorylation site, one N-myristoylation site, and one Amidation site in the BANF1 protein of the Black Bear. The BANF1 gene can be readily expressed in E. coli. Results showed that the protein BANF1 fusion with the N-terminally His-tagged form gave rise to the accumulation of an expected 14 kD polypeptide that formed inclusion bodies. The expression products obtained could be used to purify the proteins and study their function further.

  7. Basic Fibroblast Growth Factor Stimulates the Proliferation of Bone Marrow Mesenchymal Stem Cells in Giant Panda (Ailuropoda melanoleuca).

    Science.gov (United States)

    Wang, Jun-Jie; Liu, Yu-Liang; Sun, Yuan-Chao; Ge, Wei; Wang, Yong-Yong; Dyce, Paul W; Hou, Rong; Shen, Wei

    2015-01-01

    It has been widely known that the giant panda (Ailuropoda melanoleuca) is one of the most endangered species in the world. An optimized platform for maintaining the proliferation of giant panda mesenchymal stem cells (MSCs) is very necessary for current giant panda protection strategies. Basic fibroblast growth factor (bFGF), a member of the FGF family, is widely considered as a growth factor and differentiation inducer within the stem cell research field. However, the role of bFGF on promoting the proliferation of MSCs derived from giant panda bone marrow (BM) has not been reported. In this study, we aimed to investigate the role of bFGF on the proliferation of BM-MSCs derived from giant panda. MSCs were cultured for cell proliferation analysis at 24, 48 and 72 hrs following the addition of bFGF. With increasing concentrations of bFGF, cell numbers gradually increased. This was further demonstrated by performing 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT) cell proliferation assay, 5-Bromo-2-deoxyUridine (BrdU) labeling and cell cycle testing. Furthermore, the percentage of MSCs that were OCT4 positive increased slightly following treatment with 5 ng/ml bFGF. Moreover, we demonstrated that the extracellular signal-regulated kinase (ERK) signaling pathway may play an important role in the proliferation of panda MSCs stimulated by bFGF. In conclusion, this study suggests that giant panda BM-MSCs have a high proliferative capacity with the addition of 5 ng/ml bFGF in vitro.

  8. Basic Fibroblast Growth Factor Stimulates the Proliferation of Bone Marrow Mesenchymal Stem Cells in Giant Panda (Ailuropoda melanoleuca)

    Science.gov (United States)

    Wang, Jun-Jie; Liu, Yu-Liang; Sun, Yuan-Chao; Ge, Wei; Wang, Yong-Yong; Dyce, Paul W.; Hou, Rong; Shen, Wei

    2015-01-01

    It has been widely known that the giant panda (Ailuropoda melanoleuca) is one of the most endangered species in the world. An optimized platform for maintaining the proliferation of giant panda mesenchymal stem cells (MSCs) is very necessary for current giant panda protection strategies. Basic fibroblast growth factor (bFGF), a member of the FGF family, is widely considered as a growth factor and differentiation inducer within the stem cell research field. However, the role of bFGF on promoting the proliferation of MSCs derived from giant panda bone marrow (BM) has not been reported. In this study, we aimed to investigate the role of bFGF on the proliferation of BM-MSCs derived from giant panda. MSCs were cultured for cell proliferation analysis at 24, 48 and 72 hrs following the addition of bFGF. With increasing concentrations of bFGF, cell numbers gradually increased. This was further demonstrated by performing 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT) cell proliferation assay, 5-Bromo-2-deoxyUridine (BrdU) labeling and cell cycle testing. Furthermore, the percentage of MSCs that were OCT4 positive increased slightly following treatment with 5 ng/ml bFGF. Moreover, we demonstrated that the extracellular signal-regulated kinase (ERK) signaling pathway may play an important role in the proliferation of panda MSCs stimulated by bFGF. In conclusion, this study suggests that giant panda BM-MSCs have a high proliferative capacity with the addition of 5 ng/ml bFGF in vitro. PMID:26375397

  9. Basic Fibroblast Growth Factor Stimulates the Proliferation of Bone Marrow Mesenchymal Stem Cells in Giant Panda (Ailuropoda melanoleuca.

    Directory of Open Access Journals (Sweden)

    Jun-Jie Wang

    Full Text Available It has been widely known that the giant panda (Ailuropoda melanoleuca is one of the most endangered species in the world. An optimized platform for maintaining the proliferation of giant panda mesenchymal stem cells (MSCs is very necessary for current giant panda protection strategies. Basic fibroblast growth factor (bFGF, a member of the FGF family, is widely considered as a growth factor and differentiation inducer within the stem cell research field. However, the role of bFGF on promoting the proliferation of MSCs derived from giant panda bone marrow (BM has not been reported. In this study, we aimed to investigate the role of bFGF on the proliferation of BM-MSCs derived from giant panda. MSCs were cultured for cell proliferation analysis at 24, 48 and 72 hrs following the addition of bFGF. With increasing concentrations of bFGF, cell numbers gradually increased. This was further demonstrated by performing 3-(4,5-dimethyl-2-thiazolyl-2,5-diphenyl-2-H-tetrazolium bromide (MTT cell proliferation assay, 5-Bromo-2-deoxyUridine (BrdU labeling and cell cycle testing. Furthermore, the percentage of MSCs that were OCT4 positive increased slightly following treatment with 5 ng/ml bFGF. Moreover, we demonstrated that the extracellular signal-regulated kinase (ERK signaling pathway may play an important role in the proliferation of panda MSCs stimulated by bFGF. In conclusion, this study suggests that giant panda BM-MSCs have a high proliferative capacity with the addition of 5 ng/ml bFGF in vitro.

  10. Exosomal microRNAs in giant panda (Ailuropoda melanoleuca) breast milk: potential maternal regulators for the development of newborn cubs.

    Science.gov (United States)

    Ma, Jideng; Wang, Chengdong; Long, Keren; Zhang, Hemin; Zhang, Jinwei; Jin, Long; Tang, Qianzi; Jiang, Anan; Wang, Xun; Tian, Shilin; Chen, Li; He, Dafang; Li, Desheng; Huang, Shan; Jiang, Zhi; Li, Mingzhou

    2017-06-14

    The physiological role of miRNAs is widely understood to include fine-tuning the post-transcriptional regulation of a wide array of biological processes. Extensive studies have indicated that exosomal miRNAs in the bodily fluids of various organisms can be transferred between living cells for the delivery of gene silencing signals. Here, we illustrated the expression characteristics of exosomal miRNAs in giant panda breast milk during distinct lactation periods and highlighted the enrichment of immune- and development-related endogenous miRNAs in colostral and mature giant panda milk. These miRNAs are stable, even under certain harsh conditions, via the protection of extracellular vesicles. These findings indicate that breast milk may facilitate the dietary intake of maternal miRNAs by infants for the regulation of postnatal development. We also detected exogenous plant miRNAs from the primary food source of the giant panda (bamboo) in the exosomes of giant panda breast milk that were associated with regulatory roles in basic metabolism and neuron development. This result suggested that dietary plant miRNAs are absorbed by host cells and subsequently secreted into bodily fluids as potential cross-kingdom regulators. In conclusion, exosomal miRNAs in giant panda breast milk may be crucial maternal regulators for the development of intrinsic 'slink' newborn cubs.

  11. Genome-wide survey and analysis of microsatellites in giant panda (Ailuropoda melanoleuca), with a focus on the applications of a novel microsatellite marker system.

    Science.gov (United States)

    Huang, Jie; Li, Yu-Zhi; Du, Lian-Ming; Yang, Bo; Shen, Fu-Jun; Zhang, He-Min; Zhang, Zhi-He; Zhang, Xiu-Yue; Yue, Bi-Song

    2015-02-07

    The giant panda (Ailuropoda melanoleuca) is a critically endangered species endemic to China. Microsatellites have been preferred as the most popular molecular markers and proven effective in estimating population size, paternity test, genetic diversity for the critically endangered species. The availability of the giant panda complete genome sequences provided the opportunity to carry out genome-wide scans for all types of microsatellites markers, which now opens the way for the analysis and development of microsatellites in giant panda. By screening the whole genome sequence of giant panda in silico mining, we identified microsatellites in the genome of giant panda and analyzed their frequency and distribution in different genomic regions. Based on our search criteria, a repertoire of 855,058 SSRs was detected, with mono-nucleotides being the most abundant. SSRs were found in all genomic regions and were more abundant in non-coding regions than coding regions. A total of 160 primer pairs were designed to screen for polymorphic microsatellites using the selected tetranucleotide microsatellite sequences. The 51 novel polymorphic tetranucleotide microsatellite loci were discovered based on genotyping blood DNA from 22 captive giant pandas in this study. Finally, a total of 15 markers, which showed good polymorphism, stability, and repetition in faecal samples, were used to establish the novel microsatellite marker system for giant panda. Meanwhile, a genotyping database for Chengdu captive giant pandas (n = 57) were set up using this standardized system. What's more, a universal individual identification method was established and the genetic diversity were analysed in this study as the applications of this marker system. The microsatellite abundance and diversity were characterized in giant panda genomes. A total of 154,677 tetranucleotide microsatellites were identified and 15 of them were discovered as the polymorphic and stable loci. The individual

  12. Determination of Baylisascaris schroederi infection in wild giant pandas by an accurate and sensitive PCR/CE-SSCP method.

    Directory of Open Access Journals (Sweden)

    Wenping Zhang

    Full Text Available It has been recognized that other than habitat loss, degradation and fragmentation, the infection of the roundworm Baylisascaris schroederi (B. schroederi is one of the major causes of death in wild giant pandas. However, the prevalence and intensity of the parasite infection has been inconsistently reported through a method that uses sedimentation-floatation followed by a microscope examination. This method fails to accurately determine infection because there are many bamboo residues and/or few B. schroederi eggs in the examined fecal samples. In the present study, we adopted a method that uses PCR and capillary electrophoresis combined with a single-strand conformation polymorphism analysis (PCR/CE-SSCP to detect B. schroederi infection in wild giant pandas at a nature reserve, and compared it to the traditional microscope approach. The PCR specifically amplified a single band of 279-bp from both fecal samples and positive controls, which was confirmed by sequence analysis to correspond to the mitochondrial COII gene of B. schroederi. Moreover, it was demonstrated that the amount of genomic DNA was linearly correlated with the peak area of the CE-SSCP analysis. Thus, our adopted method can reliably detect the infectious prevalence and intensity of B. schroederi in wild giant pandas. The prevalence of B. schroederi was found to be 54% in the 91 fecal samples examined, and 48% in the fecal samples of 31 identified individual giant pandas. Infectious intensities of the 91 fecal samples were detected to range from 2.8 to 959.2 units/gram, and from 4.8 to 959.2 units/gram in the fecal samples of the 31 identified giant pandas. For comparison, by using the traditional microscope method, the prevalence of B. schroederi was found to be only 33% in the 91 fecal samples, 32% in the fecal samples of the 31 identified giant pandas, and no reliable infectious intensity was observed.

  13. Phenological changes in bamboo carbohydrates explain the preference for culm over leaves by giant pandas (Ailuropoda melanoleuca during spring.

    Directory of Open Access Journals (Sweden)

    Katrina K Knott

    Full Text Available Seasonal changes in the foodscape force herbivores to select different plant species or plant parts to meet nutritional requirements. We examined whether the search for calorie-rich carbohydrates explained giant panda's selection for bamboo culm over leaves during spring. Leaves and culms were collected from four Phyllostachys bamboos (P. aurea, P. aureosulcata, P. glauca, and P. nuda once per month over 18-27 months. Monthly changes in annual plant part nutrients were examined, and compared to seasonal foraging behaviors of captive giant pandas. Although total fiber was greater (p<0.0001 in culm (85.6 ± 0.5% than leaves (55.3 ± 0.4% throughout the year, culm fiber was at its lowest in spring (79-85% when culm selection by giant pandas exceeded 70% of their overall diet. Culm starch also was greatest (p = 0.044 during spring (5.5 ± 1.1% and 2.5-fold the percentage of starch in leaves (2.2 ± 0.6%. The free sugars in spring culm consisted of a high proportion of glucose (35% and fructose (47%, whereas sucrose made up 42% of the total free sugar content of spring leaves. Bound sugars in culm consisted of 60% glucose and 38% xylose likely representative of hemicellulose. The concentrations of bound sugars (hemicelluloses in spring culms (543.7 ± 13.0 mg/g was greater (p<0.001 than in leaves (373.0 ± 14.8 mg/g. These data help explain a long-standing question in giant panda foraging ecology: why consume the plant part with the lowest protein and fat during the energetically intensive spring breeding season? Giant pandas likely prefer spring culm that contains abundant mono- and polysaccharides made more bioavailable as a result of reduced fiber content. These data suggest that phenological changes in bamboo plant part nutrition drive foraging decisions by giant pandas.

  14. Nutrient and mineral composition during shoot growth in seven species of Phyllostachys and Pseudosasa bamboo consumed by giant panda.

    Science.gov (United States)

    Christian, A L; Knott, K K; Vance, C K; Falcone, J F; Bauer, L L; Fahey, G C; Willard, S; Kouba, A J

    2015-12-01

    During the annual period of bamboo shoot growth in spring, free-ranging giant pandas feed almost exclusively on the shoots while ignoring the leaves and full- height culm. Little is known about the nutritional changes that occur during bamboo shoot growth, if nutritional changes differ among species, or how these changes might influence forage selection. Our objective was to examine the nutrient and mineral composition during three phases of shoot growth (180 cm) for seven species of bamboo (Phyllostachys (P.) aurea, P. aureosulcata, P. bissetii, P. glauca, P. nuda, P. rubromarginata, Pseudosasa japonica) fed to captive giant pandas at the Memphis Zoo. Total dietary fiber content of bamboo shoots increased (p 180 cm, while crude protein, fat and ash exhibited significant declines (p panda diets when available. Journal of Animal Physiology and Animal Nutrition © 2015 Blackwell Verlag GmbH.

  15. Greater taxol yield of fungus Pestalotiopsis hainanensis from dermatitic scurf of the giant panda (Ailuropoda melanoleuca).

    Science.gov (United States)

    Gu, Yu; Wang, Yanlin; Ma, Xiaoping; Wang, Chengdong; Yue, Guizhou; Zhang, Yuetian; Zhang, Yunyan; Li, Shanshan; Ling, Shanshan; Liu, Xiaomin; Wen, Xintian; Cao, Sanjie; Huang, Xiaobo; Deng, Junliang; Zuo, Zhicai; Yu, Shumin; Shen, Liuhong; Wu, Rui

    2015-01-01

    While taxol yields of fungi from non-animal sources are still low, whether Pestalotiopsis hainanensis isolated from the scurf of a dermatitic giant panda, Ailuropoda melanoleuca, provides a greater taxol yield remains unknown. The objective of the study was to determine the corresponding taxol yield. The structure of the taxol produced by the fungus was evaluated by thin layer chromatography (TLC), ultraviolet (UV) spectroscopy, high-performance liquid chromatography (HPLC), (1)H and (13)C nuclear magnetic resonance spectroscopy ((1)H-NMR and (13)C-NMR), and time-of-flight mass spectrometry (TOF-MS), with standard taxol as a control. The results demonstrated that the P. hainanensis fungus produced taxol, which had the same structure as the standard taxol and yield of 1,466.87 μg/L. This fungal taxol yield from the dermatitic giant panda was significantly greater than those of fungus from non-animal sources. The taxol-producing fungus may be a potential candidate for the production of taxol on an industrial scale.

  16. A novel endogenous betaretrovirus group characterized from polar bears (Ursus maritimus) and giant pandas (Ailuropoda melanoleuca).

    Science.gov (United States)

    Mayer, Jens; Tsangaras, Kyriakos; Heeger, Felix; Avila-Arcos, María; Stenglein, Mark D; Chen, Wei; Sun, Wei; Mazzoni, Camila J; Osterrieder, Nikolaus; Greenwood, Alex D

    2013-08-15

    Transcriptome analysis of polar bears (Ursus maritimus) yielded sequences with highest similarity to the human endogenous retrovirus group HERV-K(HML-2). Further analysis of the polar bear draft genome identified an endogenous betaretrovirus group comprising 26 proviral copies and 231 solo LTRs. Molecular dating indicates the group originated before the divergence of bears from a common ancestor but is not present in all carnivores. Closely related sequences were identified in the giant panda (Ailuropoda melanoleuca) and characterized from its genome. We have designated the polar bear and giant panda sequences U. maritimus endogenous retrovirus (UmaERV) and A. melanoleuca endogenous retrovirus (AmeERV), respectively. Phylogenetic analysis demonstrated that the bear virus group is nested within the HERV-K supergroup among bovine and bat endogenous retroviruses suggesting a complex evolutionary history within the HERV-K group. All individual remnants of proviral sequences contain numerous frameshifts and stop codons and thus, the virus is likely non-infectious. Copyright © 2013 Elsevier Inc. All rights reserved.

  17. Potential solar radiation pattern in relation to the monthly distribution of giant pandas in Foping Nature Reserve, China

    NARCIS (Netherlands)

    Liu, X.; Cheng, X.; Skidmore, A.K.

    2011-01-01

    Solar radiation is an important parameter in ecological process modeling, hydrological modeling and bio-physical modeling. However, models focusing on solar radiation in relation to giant panda habitat and seasonal distribution are limited. The research aims to form spatial models of 12 month solar

  18. cDNA, genomic sequence cloning and overexpression of ribosomal protein S25 gene (RPS25) from the Giant Panda.

    Science.gov (United States)

    Hao, Yan-Zhe; Hou, Wan-Ru; Hou, Yi-Ling; Du, Yu-Jie; Zhang, Tian; Peng, Zheng-Song

    2009-11-01

    RPS25 is a component of the 40S small ribosomal subunit encoded by RPS25 gene, which is specific to eukaryotes. Studies in reference to RPS25 gene from animals were handful. The Giant Panda (Ailuropoda melanoleuca), known as a "living fossil", are increasingly concerned by the world community. Studies on RPS25 of the Giant Panda could provide scientific data for inquiring into the hereditary traits of the gene and formulating the protective strategy for the Giant Panda. The cDNA of the RPS25 cloned from Giant Panda is 436 bp in size, containing an open reading frame of 378 bp encoding 125 amino acids. The length of the genomic sequence is 1,992 bp, which was found to possess four exons and three introns. Alignment analysis indicated that the nucleotide sequence of the coding sequence shows a high homology to those of Homo sapiens, Bos taurus, Mus musculus and Rattus norvegicus as determined by Blast analysis, 92.6, 94.4, 89.2 and 91.5%, respectively. Primary structure analysis revealed that the molecular weight of the putative RPS25 protein is 13.7421 kDa with a theoretical pI 10.12. Topology prediction showed there is one N-glycosylation site, one cAMP and cGMP-dependent protein kinase phosphorylation site, two Protein kinase C phosphorylation sites and one Tyrosine kinase phosphorylation site in the RPS25 protein of the Giant Panda. The RPS25 gene was overexpressed in E. coli BL21 and Western Blotting of the RPS25 protein was also done. The results indicated that the RPS25 gene can be really expressed in E. coli and the RPS25 protein fusioned with the N-terminally his-tagged form gave rise to the accumulation of an expected 17.4 kDa polypeptide. The cDNA and the genomic sequence of RPS25 were cloned successfully for the first time from the Giant Panda using RT-PCR technology and Touchdown-PCR, respectively, which were both sequenced and analyzed preliminarily; then the cDNA of the RPS25 gene was overexpressed in E. coli BL21 and immunoblotted, which is the first

  19. Relationship between drug resistance and the clustered, regularly interspaced, short, palindromic repeat-associated protein genes cas1 and cas2 in Shigella from giant panda dung.

    Science.gov (United States)

    Ren, Lu; Deng, Lin-Hua; Zhang, Ri-Peng; Wang, Cheng-Dong; Li, De-Sheng; Xi, Li-Xin; Chen, Zhen-Rong; Yang, Rui; Huang, Jie; Zeng, Yang-Ru; Wu, Hong-Lin; Cao, San-Jie; Wu, Rui; Huang, Yong; Yan, Qi-Gui

    2017-02-01

    To detect drug resistance in Shigella obtained from the dung of the giant panda, explore the factors leading to drug resistance in Shigella, understand the characteristics of clustered, regularly interspaced, short, palindromic repeats (CRISPR), and assess the relationship between CRISPR and drug resistance. We collected fresh feces from 27 healthy giant pandas in the Giant Panda Conservation base (Wolong, China). We identified the strains of Shigella in the samples by using nucleotide sequence analysis. Further, the Kirby-Bauer paper method was used to determine drug sensitivity of the Shigella strains. CRISPR-associated protein genes cas1 and cas2 in Shigella were detected by polymerase chain reaction (PCR), and the PCR products were sequenced and compared. We isolated and identified 17 strains of Shigella from 27 samples, including 14 strains of Shigella flexneri, 2 strains of Shigella sonnei, and 1 strain of Shigella dysenteriae. Further, drug resistance to cefazolin, imipenem, and amoxicillin-clavulanic acid was identified as a serious problem, as multidrug-resistant strains were detected. Further, cas1 and cas2 showed different degrees of point mutations. The CRISPR system widely exists in Shigella and shares homology with that in Escherichia coli. The cas1 and cas 2 mutations contribute to the different levels of resistance. Point mutations at sites 3176455, 3176590, and 3176465 in cas1 (a); sites 3176989, 3176992, and 3176995 in cas1 (b); sites 3176156 and 3176236 in cas2 may affect the resistance of bacteria, cause emergence of multidrug resistance, and increase the types of drug resistance.

  20. Spectral pattern of urinary water as a biomarker of estrus in the giant panda

    Science.gov (United States)

    Kinoshita, Kodzue; Miyazaki, Mari; Morita, Hiroyuki; Vassileva, Maria; Tang, Chunxiang; Li, Desheng; Ishikawa, Osamu; Kusunoki, Hiroshi; Tsenkova, Roumiana

    2012-11-01

    Near infrared spectroscopy (NIRS) has been successfully used for non-invasive diagnosis of diseases and abnormalities where water spectral patterns are found to play an important role. The present study investigates water absorbance patterns indicative of estrus in the female giant panda. NIR spectra of urine samples were acquired from the same animal on a daily basis over three consecutive putative estrus periods. Characteristic water absorbance patterns based on 12 specific water absorbance bands were discovered, which displayed high urine spectral variation, suggesting that hydrogen-bonded water structures increase with estrus. Regression analysis of urine spectra and spectra of estrone-3-glucuronide standard concentrations at these water bands showed high correlation with estrogen levels. Cluster analysis of urine spectra grouped together estrus samples from different years. These results open a new avenue for using water structure as a molecular mirror for fast estrus detection.

  1. Transcriptional regulation and adaptation to a high-fiber environment in Bacillus subtilis HH2 isolated from feces of the giant panda.

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    Ziyao Zhou

    Full Text Available In the giant panda, adaptation to a high-fiber environment is a first step for the adequate functioning of intestinal bacteria, as the high cellulose content of the gut due to the panda's vegetarian appetite results in a harsh environment. As an excellent producer of several enzymes and vitamins, Bacillus subtilis imparts various advantages to animals. In our previous study, we determined that several strains of B. subtilis isolated from pandas exhibited good cellulose decomposition ability, and we hypothesized that this bacterial species can survive in and adapt well to a high-fiber environment. To evaluate this hypothesis, we employed RNA-Seq technology to analyze the differentially expressed genes of the selected strain B. subtilis HH2, which demonstrates significant cellulose hydrolysis of different carbon sources (cellulose and glucose. In addition, we used bioinformatics software and resources to analyze the functions and pathways of differentially expressed genes. Interestingly, comparison of the cellulose and glucose groups revealed that the up-regulated genes were involved in amino acid and lipid metabolism or transmembrane transport, both of which are involved in cellulose utilization. Conversely, the down-regulated genes were involved in non-essential functions for bacterial life, such as toxin and bacteriocin secretion, possibly to conserve energy for environmental adaptation. The results indicate that B. subtilis HH2 triggered a series of adaptive mechanisms at the transcriptional level, which suggests that this bacterium could act as a probiotic for pandas fed a high-fiber diet, despite the fact that cellulose is not a very suitable carbon source for this bacterial species. In this study, we present a model to understand the dynamic organization of and interactions between various functional and regulatory networks for unicellular organisms in a high-fiber environment.

  2. Enhancing captive breeding in giant pandas (Ailuropoda melanoleuca): maintaining lactation when cubs are rejected, and understanding variation in milk collection and associated factors.

    Science.gov (United States)

    Wei, Rongping; Zhang, Guiquan; Yin, Feng; Zhang, Hemin; Liu, Dingzhen

    2009-07-01

    From 1997 to 2002, a female giant panda (Ailuropoda melanoleuca) was artificially stimulated and lactation was maintained, after her neonates were removed due to the female's inability to provide maternal care. Milk samples were collected and the amount of milk collected was quantified. The lactation curve of this animal was estimated based on the Gamma function: Y(t)=at(b)e(-ct). The amount of milk collected showed significant, positive relationships with the number of days after parturition both in 1999 and in the whole study period from 1998 to 2002. This female's lactation curves fit the type I pattern of a typical mammalian lactation curve. Daily milk collection (g) during the first 30 days after parturition, and from 31 to 60 days after parturition, showed a consistent pattern with one peak at around 8:00 hr. More milk was collected during the latter period than during the former period. The amount of milk (g) collected on mucus excretion days was significantly less than that on days after mucus excretion had ended, yet no significant difference was found between milk collected one day before mucus days and on mucus days, or between milk collected one day before and one day after mucus days. Mucus excretion from the gastrointestinal tract significantly impacted the amount of milk collected. The results from this study may aid the captive propagation and conservation of giant pandas and other endangered and rare captive mammal species.

  3. Virtual cranial endocast of the oldest giant panda ( Ailuropoda microta) reveals great similarity to that of its extant relative

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    Dong, Wei

    2008-11-01

    Recent development of computed tomography and three-dimensional visualization techniques has enabled the non-destructive inspection of the endocast morphology of fossil neurocranium, the basic material for paleoneurological study. A virtual cranial endocast was reconstructed based on the first skull of the oldest giant panda, Ailuropoda microta, discovered recently and dated at more than 2 Myr (million years) ago. It was compared with that of the extant giant panda ( A. melanoleuca) and that of the polar bear ( Ursus maritimus), as well as CT slices of the late Pleistocene A. baconi. The overall endocast morphology of A. microta is more similar to that of A. baconi and A. melanoleuca than to that of U. maritimus. The absolute endocast size is the smallest in A. microta, largest in A. baconi, and intermediate in A. melanoleuca. However, the proportion of cerebral volume to total endocast size is very close to each other between the oldest and extant giant panda, as well as the sulcal length per unit area of cerebral endocast surface.

  4. Patterns of adaptive and neutral diversity identify the Xiaoxiangling mountains as a refuge for the giant panda.

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    Yi-Yan Chen

    Full Text Available Genetic variation plays a significant role in maintaining the evolutionary potential of a species. Comparing the patterns of adaptive and neutral diversity in extant populations is useful for understanding the local adaptations of a species. In this study, we determined the fine-scale genetic structure of 6 extant populations of the giant panda (Ailuropoda melanoleuca using mtDNA and DNA fingerprints, and then overlaid adaptive variations in 6 functional Aime-MHC class II genes (DRA, DRB3, DQA1, DQA2, DQB1, and DQB2 on this framework. We found that: (1 analysis of the mtDNA and DNA fingerprint-based networks of the 6 populations identified the independent evolutionary histories of the 2 panda subspecies; (2 the basal (ancestral branches of the fingerprint-based Sichuan-derived network all originated from the smallest Xiaoxiangling (XXL population, suggesting the status of a glacial refuge in XXL; (3 the MHC variations among the tested populations showed that the XXL population exhibited extraordinary high levels of MHC diversity in allelic richness, which is consistent with the diversity characteristics of a glacial refuge; (4 the phylogenetic tree showed that the basal clades of giant panda DQB sequences were all occupied by XXL-specific sequences, providing evidence for the ancestor-resembling traits of XXL. Finally, we found that the giant panda had many more DQ alleles than DR alleles (33∶13, contrary to other mammals, and that the XXL refuge showed special characteristics in the DQB loci, with 7 DQB members of 9 XXL-unique alleles. Thus, this study identified XXL as a glacial refuge, specifically harboring the most number of primitive DQB alleles.

  5. Giant Panda Maternal Care: A Test of the Experience Constraint Hypothesis

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    Snyder, Rebecca J.; Perdue, Bonnie M.; Zhang, Zhihe; Maple, Terry L.; Charlton, Benjamin D.

    2016-01-01

    The body condition constraint and the experience condition constraint hypotheses have both been proposed to account for differences in reproductive success between multiparous (experienced) and primiparous (first-time) mothers. However, because primiparous mothers are typically characterized by both inferior body condition and lack of experience when compared to multiparous mothers, interpreting experience related differences in maternal care as support for either the body condition constraint hypothesis or the experience constraint hypothesis is extremely difficult. Here, we examined maternal behaviour in captive giant pandas, allowing us to simultaneously control for body condition and provide a rigorous test of the experience constraint hypothesis in this endangered animal. We found that multiparous mothers spent more time engaged in key maternal behaviours (nursing, grooming, and holding cubs) and had significantly less vocal cubs than primiparous mothers. This study provides the first evidence supporting the experience constraint hypothesis in the order Carnivora, and may have utility for captive breeding programs in which it is important to monitor the welfare of this species’ highly altricial cubs, whose survival is almost entirely dependent on receiving adequate maternal care during the first few weeks of life. PMID:27272352

  6. Effects of Ambient Environmental Factors on the Stereotypic Behaviors of Giant Pandas (Ailuropoda melanoleuca).

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    Liu, He; Duan, Hejun; Wang, Cheng

    2017-01-01

    Stereotypies are commonly observed in zoo animals, and it is necessary to better understand whether ambient environmental factors contribute to stereotypy and how to affect animal welfare in zoo settings. This study investigated the relationships between stereotypic behaviors and environmental factors including ambient temperatures, humidity, light intensity, sound intensity and number of visitors. Seven giant pandas were observed in three indoor enclosures and three outdoor enclosures. Environmental factors were measured for both indoor and outdoor enclosures and the effect they had on stereotypical behaviors was investigated. Our research found that light intensity significantly correlated with all stereotypies behaviors. Higher environmental temperature reduced the duration of pacing but increased the frequency of pacing, the duration and frequency of door-directed, meanwhile the duration of head-toss. However, we found no noticeable effect of humidity on stereotypic behaviors except for the frequency of head-toss. We also found that sound intensity was not correlated with stereotypies. Finally, the growth of visitors was negatively associated with the duration of door-directed. These results demonstrated that various environmental factors can have significant effects on stereotypic behaviors causing the expression of various stereotypies. Thus, stereotypies in zoo animals may not simply represent suboptimal welfare, but rather might be adopted as a means of coping with an aversive environment.

  7. Effects of Ambient Environmental Factors on the Stereotypic Behaviors of Giant Pandas (Ailuropoda melanoleuca.

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    He Liu

    Full Text Available Stereotypies are commonly observed in zoo animals, and it is necessary to better understand whether ambient environmental factors contribute to stereotypy and how to affect animal welfare in zoo settings. This study investigated the relationships between stereotypic behaviors and environmental factors including ambient temperatures, humidity, light intensity, sound intensity and number of visitors. Seven giant pandas were observed in three indoor enclosures and three outdoor enclosures. Environmental factors were measured for both indoor and outdoor enclosures and the effect they had on stereotypical behaviors was investigated. Our research found that light intensity significantly correlated with all stereotypies behaviors. Higher environmental temperature reduced the duration of pacing but increased the frequency of pacing, the duration and frequency of door-directed, meanwhile the duration of head-toss. However, we found no noticeable effect of humidity on stereotypic behaviors except for the frequency of head-toss. We also found that sound intensity was not correlated with stereotypies. Finally, the growth of visitors was negatively associated with the duration of door-directed. These results demonstrated that various environmental factors can have significant effects on stereotypic behaviors causing the expression of various stereotypies. Thus, stereotypies in zoo animals may not simply represent suboptimal welfare, but rather might be adopted as a means of coping with an aversive environment.

  8. Impacts of canine distemper virus infection on the giant panda population from the perspective of gut microbiota.

    Science.gov (United States)

    Zhao, Na; Li, Meng; Luo, Jing; Wang, Supen; Liu, Shelan; Wang, Shan; Lyu, Wenting; Chen, Lin; Su, Wen; Ding, Hua; He, Hongxuan

    2017-01-04

    The recent increase in infectious disease outbreaks has been directly linked to the global loss of biodiversity and the decline of some endangered species populations. Between December 2014 and March 2015, five captive giant pandas died due to canine distemper virus (CDV) infection in China. CDV has taken a heavy toll on tigers and lions in recent years. Here, we describe the first gut microbiome diversity study of CDV-infected pandas. By investigating the influence of CDV infection on gut bacterial communities in infected and uninfected individuals and throughout the course of infection, we found that CDV infection distorted the gut microbiota composition by reducing the prevalence of the dominant genera, Escherichia and Clostridium, and increasing microbial diversity. Our results highlight that increases in intestinal inflammation and changes in the relative abundances of pathogen-containing gut communities occur when individuals become infected with CDV. These results may provide new insights into therapeutics that target the microbiota to attenuate the progression of CDV disease and to reduce the risk of gut-linked disease in individuals with CDV. In addition, our findings underscore the need for better information concerning the dynamics of infection and the damage caused by pathogens in panda populations.

  9. Adjuvant effects of recombinant giant panda (Ailuropoda melanoleuca) IL-18 on the canine distemper disease vaccine in mice.

    Science.gov (United States)

    Yan, Yue; Niu, Lili; Deng, Jiabo; Wang, Qiang; Yu, Jianqiu; Zhang, Yizheng; Wang, Jianxi; Chen, Jiao; Wei, Changhe; Tan, Xuemei

    2015-02-01

    Canine distemper virus (CDV) is a morbillivirus known to cause morbidity and mortality in a broad range of animals. Giant pandas (Ailuropoda melanoleuca), especially captive ones, are susceptible to natural infection with CDV. Interleukin-18 (IL-18) is a powerful adjuvant molecule that can enhance the development of antigen-specific immunity and vaccine efficacy. In this study, a giant panda IL-18 gene eukaryotic expression plasmid (pcAmIL-18) was constructed. Female BALB/c mice were muscularly inoculated with the plasmids pcAmIL-18, pcDNA3.1 and PBS, respectively. They were subsequently injected with an attenuated CDV vaccine for dogs, and the induced humoral and cellular responses were evaluated. The results showed that pcAmIL-18 remarkably improved the level of specific antibody, IFN-γ and IL-2 in mice sera, the T lymphocyte proliferation index and the percentage of CD4(+) and CD8(+) cells. These data indicated that pcAmIL-18 is a potential adjuvant that promotes specific immunity.

  10. Phylogenetic analysis of the haemagglutinin gene of canine distemper virus strains detected from giant panda and raccoon dogs in China

    Science.gov (United States)

    2013-01-01

    Background Canine distemper virus (CDV) infects a variety of carnivores, including wild and domestic Canidae. In this study, we sequenced and phylogenetic analyses of the hemagglutinin (H) genes from eight canine distemper virus (CDV) isolates obtained from seven raccoon dogs (Nyctereutes procyonoides) and a giant panda (Ailuropoda melanoleuca) in China. Results Phylogenetic analysis of the partial hemagglutinin gene sequences showed close clustering for geographic lineages, clearly distinct from vaccine strains and other wild-type foreign CDV strains, all the CDV strains were characterized as Asia-1 genotype and were highly similar to each other (91.5-99.8% nt and 94.4-99.8% aa). The giant panda and raccoon dogs all were 549Y on the HA protein in this study, irrespective of the host species. Conclusions These findings enhance our knowledge of the genetic characteristics of Chinese CDV isolates, and may facilitate the development of effective strategies for monitoring and controlling CDV for wild canids and non-cainds in China. PMID:23566727

  11. Fine-Scale Evaluation of Giant Panda Habitats and Countermeasures against the Future Impacts of Climate Change and Human Disturbance (2015–2050: A Case Study in Ya’an, China

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    Jing Zhen

    2018-04-01

    Full Text Available The accelerating impact of climate change on giant panda (Ailuropoda melanoleuca habitats have become an international research topic. Recently, many studies have also focused on medium-sized mountain ranges or entire giant panda habitats to predict how habitats will change as the climate warms, but few say in detail what to do or where to focus efforts. To fill this gap, this paper presents a new method to take comprehensive, fine-scale evaluations incorporating climate change, human disturbance, and current conservation networks and translate them into practical countermeasures in order to help decision-makers set priority regions for conservation. This study looked at the core area of the Sichuan Giant Panda Sanctuaries United Nations Educational, Scientific and Cultural Organisation (UNESCO World Natural Heritage site, namely Ya’an Prefecture, as a case study. The research employs the Maximum Entropy (MaxEnt modeling algorithm to analyze how climate change will affect the habitats by 2050 under two scenarios: only considering the influence of climate change, and thinking about the coupled influence of climate change and human disturbance together. The results showed the following: (1 only considering climate change, the overall habitat that can be used by giant pandas in this region will increase, which differs from most of the previous results showing a decrease; (2 the new suitable habitat will shift westward, northward and eastward in this region; (3 conversely, the suitable habitat will be significantly reduced (about 58.56% and fragmentized when taking into account human disturbance factors; (4 at present, the three small nature reserves are far from each other and cannot cover the present habitat well nor protect the potentially suitable habitats. Based on the comprehensive analysis of habitat shifts and our two field investigations, we suggest two regions that can be expanded into the conservation network to contain more potentially

  12. Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome.

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    Chen, Meili; Hu, Yibo; Liu, Jingxing; Wu, Qi; Zhang, Chenglin; Yu, Jun; Xiao, Jingfa; Wei, Fuwen; Wu, Jiayan

    2015-12-11

    High-quality and complete gene models are the basis of whole genome analyses. The giant panda (Ailuropoda melanoleuca) genome was the first genome sequenced on the basis of solely short reads, but the genome annotation had lacked the support of transcriptomic evidence. In this study, we applied RNA-seq to globally improve the genome assembly completeness and to detect novel expressed transcripts in 12 tissues from giant pandas, by using a transcriptome reconstruction strategy that combined reference-based and de novo methods. Several aspects of genome assembly completeness in the transcribed regions were effectively improved by the de novo assembled transcripts, including genome scaffolding, the detection of small-size assembly errors, the extension of scaffold/contig boundaries, and gap closure. Through expression and homology validation, we detected three groups of novel full-length protein-coding genes. A total of 12.62% of the novel protein-coding genes were validated by proteomic data. GO annotation analysis showed that some of the novel protein-coding genes were involved in pigmentation, anatomical structure formation and reproduction, which might be related to the development and evolution of the black-white pelage, pseudo-thumb and delayed embryonic implantation of giant pandas. The updated genome annotation will help further giant panda studies from both structural and functional perspectives.

  13. The bamboo-eating giant panda (Ailuropoda melanoleuca) has a sweet tooth: behavioral and molecular responses to compounds that taste sweet to humans.

    Science.gov (United States)

    Jiang, Peihua; Josue-Almqvist, Jesusa; Jin, Xuelin; Li, Xia; Brand, Joseph G; Margolskee, Robert F; Reed, Danielle R; Beauchamp, Gary K

    2014-01-01

    A growing body of behavioral and genetic information indicates that taste perception and food sources are highly coordinated across many animal species. For example, sweet taste perception is thought to serve to detect and motivate consumption of simple sugars in plants that provide calories. Supporting this is the observation that most plant-eating mammals examined exhibit functional sweet perception, whereas many obligate carnivores have independently lost function of their sweet taste receptors and exhibit no avidity for simple sugars that humans describe as tasting sweet. As part of a larger effort to compare taste structure/function among species, we examined both the behavioral and the molecular nature of sweet taste in a plant-eating animal that does not consume plants with abundant simple sugars, the giant panda (Ailuropoda melanoleuca). We evaluated two competing hypotheses: as plant-eating mammals, they should have a well-developed sweet taste system; however, as animals that do not normally consume plants with simple sugars, they may have lost sweet taste function, as has occurred in strict carnivores. In behavioral tests, giant pandas avidly consumed most natural sugars and some but not all artificial sweeteners. Cell-based assays revealed similar patterns of sweet receptor responses toward many of the sweeteners. Using mixed pairs of human and giant panda sweet taste receptor units (hT1R2+gpT1R3 and gpT1R2+hT1R3) we identified regions of the sweet receptor that may account for behavioral differences in giant pandas versus humans toward various sugars and artificial sweeteners. Thus, despite the fact that the giant panda's main food, bamboo, is very low in simple sugars, the species has a marked preference for several compounds that taste sweet to humans. We consider possible explanations for retained sweet perception in this species, including the potential extra-oral functions of sweet taste receptors that may be required for animals that consume

  14. Changes in the Milk Metabolome of the Giant Panda (Ailuropoda melanoleuca) with Time after Birth--Three Phases in Early Lactation and Progressive Individual Differences.

    Science.gov (United States)

    Zhang, Tong; Zhang, Rong; Zhang, Liang; Zhang, Zhihe; Hou, Rong; Wang, Hairui; Loeffler, I Kati; Watson, David G; Kennedy, Malcolm W

    2015-01-01

    Ursids (bears) in general, and giant pandas in particular, are highly altricial at birth. The components of bear milks and their changes with time may be uniquely adapted to nourish relatively immature neonates, protect them from pathogens, and support the maturation of neonatal digestive physiology. Serial milk samples collected from three giant pandas in early lactation were subjected to untargeted metabolite profiling and multivariate analysis. Changes in milk metabolites with time after birth were analysed by Principal Component Analysis, Hierarchical Cluster Analysis and further supported by Orthogonal Partial Least Square-Discriminant Analysis, revealing three phases of milk maturation: days 1-6 (Phase 1), days 7-20 (Phase 2), and beyond day 20 (Phase 3). While the compositions of Phase 1 milks were essentially indistinguishable among individuals, divergences emerged during the second week of lactation. OPLS regression analysis positioned against the growth rate of one cub tentatively inferred a correlation with changes in the abundance of a trisaccharide, isoglobotriose, previously observed to be a major oligosaccharide in ursid milks. Three artificial milk formulae used to feed giant panda cubs were also analysed, and were found to differ markedly in component content from natural panda milk. These findings have implications for the dependence of the ontogeny of all species of bears, and potentially other members of the Carnivora and beyond, on the complexity and sequential changes in maternal provision of micrometabolites in the immediate period after birth.

  15. Changes in the Milk Metabolome of the Giant Panda (Ailuropoda melanoleuca) with Time after Birth – Three Phases in Early Lactation and Progressive Individual Differences

    Science.gov (United States)

    Zhang, Tong; Zhang, Rong; Zhang, Liang; Zhang, Zhihe; Hou, Rong; Wang, Hairui; Loeffler, I. Kati; Watson, David G.; Kennedy, Malcolm W.

    2015-01-01

    Ursids (bears) in general, and giant pandas in particular, are highly altricial at birth. The components of bear milks and their changes with time may be uniquely adapted to nourish relatively immature neonates, protect them from pathogens, and support the maturation of neonatal digestive physiology. Serial milk samples collected from three giant pandas in early lactation were subjected to untargeted metabolite profiling and multivariate analysis. Changes in milk metabolites with time after birth were analysed by Principal Component Analysis, Hierarchical Cluster Analysis and further supported by Orthogonal Partial Least Square-Discriminant Analysis, revealing three phases of milk maturation: days 1–6 (Phase 1), days 7–20 (Phase 2), and beyond day 20 (Phase 3). While the compositions of Phase 1 milks were essentially indistinguishable among individuals, divergences emerged during the second week of lactation. OPLS regression analysis positioned against the growth rate of one cub tentatively inferred a correlation with changes in the abundance of a trisaccharide, isoglobotriose, previously observed to be a major oligosaccharide in ursid milks. Three artificial milk formulae used to feed giant panda cubs were also analysed, and were found to differ markedly in component content from natural panda milk. These findings have implications for the dependence of the ontogeny of all species of bears, and potentially other members of the Carnivora and beyond, on the complexity and sequential changes in maternal provision of micrometabolites in the immediate period after birth. PMID:26630345

  16. Changes in the Milk Metabolome of the Giant Panda (Ailuropoda melanoleuca with Time after Birth--Three Phases in Early Lactation and Progressive Individual Differences.

    Directory of Open Access Journals (Sweden)

    Tong Zhang

    Full Text Available Ursids (bears in general, and giant pandas in particular, are highly altricial at birth. The components of bear milks and their changes with time may be uniquely adapted to nourish relatively immature neonates, protect them from pathogens, and support the maturation of neonatal digestive physiology. Serial milk samples collected from three giant pandas in early lactation were subjected to untargeted metabolite profiling and multivariate analysis. Changes in milk metabolites with time after birth were analysed by Principal Component Analysis, Hierarchical Cluster Analysis and further supported by Orthogonal Partial Least Square-Discriminant Analysis, revealing three phases of milk maturation: days 1-6 (Phase 1, days 7-20 (Phase 2, and beyond day 20 (Phase 3. While the compositions of Phase 1 milks were essentially indistinguishable among individuals, divergences emerged during the second week of lactation. OPLS regression analysis positioned against the growth rate of one cub tentatively inferred a correlation with changes in the abundance of a trisaccharide, isoglobotriose, previously observed to be a major oligosaccharide in ursid milks. Three artificial milk formulae used to feed giant panda cubs were also analysed, and were found to differ markedly in component content from natural panda milk. These findings have implications for the dependence of the ontogeny of all species of bears, and potentially other members of the Carnivora and beyond, on the complexity and sequential changes in maternal provision of micrometabolites in the immediate period after birth.

  17. The acute phase protein ceruloplasmin as a non-invasive marker of pseudopregnancy, pregnancy, and pregnancy loss in the giant panda.

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    Erin L Willis

    Full Text Available After ovulation, non-pregnant female giant pandas experience pseudopregnancy. During pseudopregnancy, non-pregnant females exhibit physiological and behavioral changes similar to pregnancy. Monitoring hormonal patterns that are usually different in pregnant mammals are not effective at determining pregnancy status in many animals that undergo pseudopregnancy, including the giant panda. Therefore, a physiological test to distinguish between pregnancy and pseudopregnancy in pandas has eluded scientists for decades. We examined other potential markers of pregnancy and found that activity of the acute phase protein ceruloplasmin increases in urine of giant pandas in response to pregnancy. Results indicate that in term pregnancies, levels of active urinary ceruloplasmin were elevated the first week of pregnancy and remain elevated until 20-24 days prior to parturition, while no increase was observed during the luteal phase in known pseudopregnancies. Active ceruloplasmin also increased during ultrasound-confirmed lost pregnancies; however, the pattern was different compared to term pregnancies, particularly during the late luteal phase. In four out of the five additional reproductive cycles included in the current study where females were bred but no birth occurred, active ceruloplasmin in urine increased during the luteal phase. Similar to the known lost pregnancies, the temporal pattern of change in urinary ceruloplasmin during the luteal phase deviated from the term pregnancies suggesting that these cycles may have also been lost pregnancies. Among giant pandas in captivity, it has been presumed that there is a high rate of pregnancy loss and our results are the first to provide evidence supporting this notion.

  18. Literature review of giant gartersnake (Thamnophis gigas) biology and conservation

    Science.gov (United States)

    Halstead, Brian J.; Wylie, Glenn D.; Casazza, Michael L.

    2015-08-03

    This report reviews the available literature on giant gartersnakes (Thamnophis gigas) to compile existing information on this species and identify knowledge gaps that, if addressed, would help to inform conservation efforts for giant gartersnakes.  Giant gartersnakes comprise a species of semi-aquatic snake precinctive to wetlands in the Central Valley of California.  The diversion of surface water and conversion of wetlands to agricultural and other land uses resulted in the loss of more than 90 percent of natural giant gartersnake habitats.  Because of this habitat loss, giant gartersnakes are now listed by the United States and California Endangered Species Acts as Threatened.  Most extant populations occur in the rice-growing regions of the Sacramento Valley, which comprises the northern portion of the giant gartersnake’s former range.  The huge demand for water in California for agriculture, industry, recreation, and other human consumption, combined with periodic severe drought, places remaining giant gartersnake habitats at increased risk of degradation and loss.  This literature review summarizes the available information on giant gartersnake distribution, habitat relations, behavior, demography, and other aspects of its biology relevant to conservation.  This information is then compiled into a graphical conceptual model that indicates the importance of different aspects of giant gartersnake biology for maintaining positive population growth, and identifies those areas for which important information relevant for conservation is lacking.  Directing research efforts toward these aspects of giant gartersnake ecology will likely result in improvements to conserving this unique species while meeting the high demands for water in California.

  19. Changeover from signalling to energy-provisioning lipids during transition from colostrum to mature milk in the giant panda (Ailuropoda melanoleuca).

    Science.gov (United States)

    Zhang, Tong; Watson, David G; Zhang, Rong; Hou, Rong; Loeffler, I Kati; Kennedy, Malcolm W

    2016-11-03

    Among the large placental mammals, ursids give birth to the most altricial neonates with the lowest neonatal:maternal body mass ratios. This is particularly exemplified by giant pandas. To examine whether there is compensation for the provision of developmentally important nutrients that other species groups may provide in utero, we examined changes in the lipids of colostrum and milk with time after birth in giant pandas. Lipids that are developmental signals or signal precursors, and those that are fundamental to nervous system construction, such as docosahexaenoic acid (DHA) and phosphatidylserines, appear early and then fall dramatically in concentration to a baseline at 20-30 days. The dynamics of lysophosphatidic acid and eicosanoids display similar patterns, but with progressive differences between mothers. Triglycerides occur at relatively low levels initially and increase in concentration until a plateau is reached at about 30 days. These patterns indicate an early provision of signalling lipids and their precursors, particularly lipids crucial to brain, retinal and central nervous system development, followed by a changeover to lipids for energy metabolism. Thus, in giant pandas, and possibly in all bears, lactation is adapted to provisioning a highly altricial neonate to a degree that suggests equivalence to an extension of gestation.

  20. Large-Area Landslides Monitoring Using Advanced Multi-Temporal InSAR Technique over the Giant Panda Habitat, Sichuan, China

    Directory of Open Access Journals (Sweden)

    Panpan Tang

    2015-07-01

    Full Text Available The region near Dujiangyan City and Wenchuan County, Sichuan China, including significant giant panda habitats, was severely impacted by the Wenchuan earthquake. Large-area landslides occurred and seriously threatened the lives of people and giant pandas. In this paper, we report the development of an enhanced multi-temporal interferometric synthetic aperture radar (MTInSAR methodology to monitor potential post-seismic landslides by analyzing coherent scatterers (CS and distributed scatterers (DS points extracted from multi-temporal l-band ALOS/PALSAR data in an integrated manner. Through the integration of phase optimization and mitigation of the orbit and topography-related phase errors, surface deformations in the study area were derived: the rates in the line of sight (LOS direction ranged from −7 to 1.5 cm/a. Dozens of potential landslides, distributed mainly along the Minjiang River, Longmenshan Fault, and in other the high-altitude areas were detected. These findings matched the distribution of previous landslides. InSAR-derived results demonstrated that some previous landslides were still active; many unstable slopes have developed, and there are significant probabilities of future massive failures. The impact of landslides on the giant panda habitat, however ranged from low to moderate, would continue to be a concern for conservationists for some time in the future.

  1. Landscape features influence gene flow as measured by cost-distance and genetic analyses: a case study for giant pandas in the Daxiangling and Xiaoxiangling Mountains

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    Wei Fuwen

    2010-07-01

    Full Text Available Abstract Background Gene flow maintains genetic diversity within a species and is influenced by individual behavior and the geographical features of the species' habitat. Here, we have characterized the geographical distribution of genetic patterns in giant pandas (Ailuropoda melanoleuca living in four isolated patches of the Xiaoxiangling and Daxiangling Mountains. Three geographic distance definitions were used with the "isolation by distance theory": Euclidean distance (EUD, least-cost path distance (LCD defined by food resources, and LCD defined by habitat suitability. Results A total of 136 genotypes were obtained from 192 fecal samples and one blood sample, corresponding to 53 unique genotypes. Geographical maps plotted at high resolution using smaller neighborhood radius definitions produced large cost distances, because smaller radii include a finer level of detail in considering each pixel. Mantel tests showed that most correlation indices, particularly bamboo resources defined for different sizes of raster cell, were slightly larger than the correlations calculated for the Euclidean distance, with the exception of Patch C. We found that natural barriers might have decreased gene flow between the Xiaoxiangling and Daxiangling regions. Conclusions Landscape features were found to partially influence gene flow in the giant panda population. This result is closely linked to the biological character and behavior of giant pandas because, as bamboo feeders, individuals spend most of their lives eating bamboo or moving within the bamboo forest. Landscape-based genetic analysis suggests that gene flow will be enhanced if the connectivity between currently fragmented bamboo forests is increased.

  2. The bamboo-eating giant panda (Ailuropoda melanoleuca has a sweet tooth: behavioral and molecular responses to compounds that taste sweet to humans.

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    Peihua Jiang

    Full Text Available A growing body of behavioral and genetic information indicates that taste perception and food sources are highly coordinated across many animal species. For example, sweet taste perception is thought to serve to detect and motivate consumption of simple sugars in plants that provide calories. Supporting this is the observation that most plant-eating mammals examined exhibit functional sweet perception, whereas many obligate carnivores have independently lost function of their sweet taste receptors and exhibit no avidity for simple sugars that humans describe as tasting sweet. As part of a larger effort to compare taste structure/function among species, we examined both the behavioral and the molecular nature of sweet taste in a plant-eating animal that does not consume plants with abundant simple sugars, the giant panda (Ailuropoda melanoleuca. We evaluated two competing hypotheses: as plant-eating mammals, they should have a well-developed sweet taste system; however, as animals that do not normally consume plants with simple sugars, they may have lost sweet taste function, as has occurred in strict carnivores. In behavioral tests, giant pandas avidly consumed most natural sugars and some but not all artificial sweeteners. Cell-based assays revealed similar patterns of sweet receptor responses toward many of the sweeteners. Using mixed pairs of human and giant panda sweet taste receptor units (hT1R2+gpT1R3 and gpT1R2+hT1R3 we identified regions of the sweet receptor that may account for behavioral differences in giant pandas versus humans toward various sugars and artificial sweeteners. Thus, despite the fact that the giant panda's main food, bamboo, is very low in simple sugars, the species has a marked preference for several compounds that taste sweet to humans. We consider possible explanations for retained sweet perception in this species, including the potential extra-oral functions of sweet taste receptors that may be required for animals

  3. Three-dimensional image analysis of a head of the giant panda by the cone-beam type CT

    International Nuclear Information System (INIS)

    Endo, H.; Komiya, T.; Narushima, E.; Suzuki, N.

    2002-01-01

    The cone-beam type CT (Computed Tomography) enabled us to collect the three-dimensional (3D) digitalized data directly from the animal carcass. In this study, we applied the techniques of the cone-beam type CT for a carcass head of the giant panda (Ailuropoda melanoleuca) to obtain the 3D images easily without reconstruction process, and could morphologically examine the sections from the 3D data by means of non-destructive observations. The important results of the study represent the two following points. 1) We could show the morphological relationships between the muscles of mastication and the mandible in non-destructive status from the 3D data. The exact position of the coronoid process could be recognized in the rostro-lateral space of the temporal fossa. 2) By the serial sections from the 3D data sets, the morphological characteristics in the nasal cavity were detailed with high resolution in this rare species. The nasal concha was well-developed in the nasal cavity. The ethmoidal labyrinth was encountered immediately caudal to the nasal cavity and close to the region of the olfactory bulb. The ethmoidal labyrinth consisted of the complicated osseous structure in this area. The data will be useful to discuss the olfactory function in the reproduction behavior of this species

  4. An Improved Neural Network for Regional Giant Panda Habitat Suitability Mapping: A Case Study in Ya’an Prefecture

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    Jingwei Song

    2014-06-01

    Full Text Available Expert knowledge is a combination of prior information and subjective opinions based on long-experience; as such it is often not sufficiently objective to produce convincing results in animal habitat suitability index mapping. In this study, an animal habitat assessment method based on a learning neural network is proposed to reduce the level of subjectivity in animal habitat assessments. Based on two hypotheses, this method substitutes habitat suitability index with apparent density and has advantages over conventional ones such as those based on analytical hierarchy process or multivariate regression approaches. Besides, this method is integrated with a learning neural network and is suitable for building non-linear transferring functions to fit complex relationships between multiple factors influencing habitat suitability. Once the neural network is properly trained, new earth observation data can be integrated for rapid habitat suitability monitoring which could save time and resources needed for traditional data collecting approaches through extensive field surveys. Giant panda (Ailuropoda melanoleuca natural habitat in Ya’an prefecture and corresponding landsat images, DEM and ground observations are tested for validity of using the methodology reported. Results show that the method scores well in key efficiency and performance indicators and could be extended for habitat assessments, particularly of other large, rare and widely distributed animal species.

  5. Synthetic Aperture Radar (SAR Interferometry for Assessing Wenchuan Earthquake (2008 Deforestation in the Sichuan Giant Panda Site

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    Fulong Chen

    2014-07-01

    Full Text Available Synthetic aperture radar (SAR has been an unparalleled tool in cloudy and rainy regions as it allows observations throughout the year because of its all-weather, all-day operation capability. In this paper, the influence of Wenchuan Earthquake on the Sichuan Giant Panda habitats was evaluated for the first time using SAR interferometry and combining data from C-band Envisat ASAR and L-band ALOS PALSAR data. Coherence analysis based on the zero-point shifting indicated that the deforestation process was significant, particularly in habitats along the Min River approaching the epicenter after the natural disaster, and as interpreted by the vegetation deterioration from landslides, avalanches and debris flows. Experiments demonstrated that C-band Envisat ASAR data were sensitive to vegetation, resulting in an underestimation of deforestation; in contrast, L-band PALSAR data were capable of evaluating the deforestation process owing to a better penetration and the significant coherence gain on damaged forest areas. The percentage of damaged forest estimated by PALSAR decreased from 20.66% to 17.34% during 2009–2010, implying an approximate 3% recovery rate of forests in the earthquake impacted areas. This study proves that long-wavelength SAR interferometry is promising for rapid assessment of disaster-induced deforestation, particularly in regions where the optical acquisition is constrained.

  6. Cellulose-dependent expression and antibacterial characteristics of surfactin from Bacillus subtilis HH2 isolated from the giant panda

    Science.gov (United States)

    Zhong, Zhijun; Su, Huaiyi; Li, Jin; Li, Haozhou; Feng, Fan; Lan, Jingchao; Zhang, Zhihe; Fu, Hualin; Hu, Yanchun; Cao, Suizhong; Chen, Weigang; Deng, Jiabo; Yu, Jianqiu; Zhang, Wenping

    2018-01-01

    Surfactin secreted by Bacillus subtilis can confer strong, diverse antipathogenic effects, thereby benefitting the host. Carbon source is an important factor for surfactin production. However, the mechanism that bacteria utilize cellulose, the most abundant substance in the intestines of herbivores, to produce surfactin remains unclear. Here, we used B. subtilis HH2, isolated from the feces of a giant panda, as a model to determine changes in surfactin expression in the presence of different concentrations of cellulose by quantitative polymerase chain reaction and high-performance liquid chromatography. We further investigated the antimicrobial effects of surfactin against three common intestinal pathogens (Escherichia coli, Staphylococcus aureus, and Salmonella enterica) and its resistance to high temperature (60–121°C), pH (1–12), trypsin (100–300 μg/mL, pH 8), and pepsin (100–300 μg/mL, pH 2). The results showed that the surfactin expressed lowest in bacteria cultured in the presence of 1% glucose medium as the carbon source, whereas increased in an appropriate cellulose concentration (0.67% glucose and 0.33% cellulose). The surfactin could inhibit E. coli and Staphylococcus aureus, but did not affect efficiently for Salmonella enterica. The antibacterial ability of surfactin did not differ according to temperature (60–100°C), pH (2–11), trypsin (100–300 μg/mL), and pepsin (100–300 μg/mL; P > 0.05), but decreased significantly at extreme environments (121°C, pH 1 or 12; P < 0.05) compared with that in the control group (37°C, pH = 7, without any protease). In conclusion, our findings indicated that B. subtilis HH2 could increase surfactin expression in an appropriate cellulose environment and thus provide benefits to improve the intestinal health of herbivores. PMID:29385201

  7. Cellulose-dependent expression and antibacterial characteristics of surfactin from Bacillus subtilis HH2 isolated from the giant panda.

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    Ziyao Zhou

    Full Text Available Surfactin secreted by Bacillus subtilis can confer strong, diverse antipathogenic effects, thereby benefitting the host. Carbon source is an important factor for surfactin production. However, the mechanism that bacteria utilize cellulose, the most abundant substance in the intestines of herbivores, to produce surfactin remains unclear. Here, we used B. subtilis HH2, isolated from the feces of a giant panda, as a model to determine changes in surfactin expression in the presence of different concentrations of cellulose by quantitative polymerase chain reaction and high-performance liquid chromatography. We further investigated the antimicrobial effects of surfactin against three common intestinal pathogens (Escherichia coli, Staphylococcus aureus, and Salmonella enterica and its resistance to high temperature (60-121°C, pH (1-12, trypsin (100-300 μg/mL, pH 8, and pepsin (100-300 μg/mL, pH 2. The results showed that the surfactin expressed lowest in bacteria cultured in the presence of 1% glucose medium as the carbon source, whereas increased in an appropriate cellulose concentration (0.67% glucose and 0.33% cellulose. The surfactin could inhibit E. coli and Staphylococcus aureus, but did not affect efficiently for Salmonella enterica. The antibacterial ability of surfactin did not differ according to temperature (60-100°C, pH (2-11, trypsin (100-300 μg/mL, and pepsin (100-300 μg/mL; P > 0.05, but decreased significantly at extreme environments (121°C, pH 1 or 12; P < 0.05 compared with that in the control group (37°C, pH = 7, without any protease. In conclusion, our findings indicated that B. subtilis HH2 could increase surfactin expression in an appropriate cellulose environment and thus provide benefits to improve the intestinal health of herbivores.

  8. Characterization of Haemaphysalis flava (Acari: Ixodidae from Qingling subspecies of giant panda (Ailuropoda melanoleuca qinlingensis in Qinling Mountains (Central China by morphology and molecular markers.

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    Wen-yu Cheng

    Full Text Available Tick is one of important ectoparasites capable of causing direct damage to their hosts and also acts as vectors of relevant infectious agents. In the present study, the taxa of 10 ticks, collected from Qinling giant pandas (Ailuropoda melanoleuca qinlingensis in Qinling Mountains of China in April 2010, were determined using morphology and molecular markers (nucleotide ITS2 rDNA and mitochondrial 16S. Microscopic observation demonstrated that the morphological features of these ticks were similar to Haemaphysalis flava. Compared with other Haemaphysalis species, genetic variations between Haemaphysalis collected from A. m. qinlingensis and H. flava were the lowest in ITS2 rDNA and mitochondrial 16S, with sequence differences of 2.06%-2.40% and 1.30%-4.70%, respectively. Phylogenetic relationships showed that all the Haemaphysalis collected from A. m. qinlingensis were grouped with H. flava, further confirmed that the Haemaphysalis sp. is H. flava. This is the first report of ticks in giant panda by combining with morphology and molecular markers. This study also provided evidence that combining morphology and molecular tools provide a valuable and efficient tool for tick identification.

  9. Giant panda genomic data provide insight into the birth-and-death process of mammalian major histocompatibility complex class II genes.

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    Qiu-Hong Wan

    Full Text Available To gain an understanding of the genomic structure and evolutionary history of the giant panda major histocompatibility complex (MHC genes, we determined a 636,503-bp nucleotide sequence spanning the MHC class II region. Analysis revealed that the MHC class II region from this rare species contained 26 loci (17 predicted to be expressed, of which 10 are classical class II genes (1 DRA, 2 DRB, 2 DQA, 3 DQB, 1 DYB, 1 DPA, and 2 DPB and 4 are non-classical class II genes (1 DOA, 1 DOB, 1 DMA, and 1 DMB. The presence of DYB, a gene specific to ruminants, prompted a comparison of the giant panda class II sequence with those of humans, cats, dogs, cattle, pigs, and mice. The results indicated that birth and death events within the DQ and DRB-DY regions led to major lineage differences, with absence of these regions in the cat and in humans and mice respectively. The phylogenetic trees constructed using all expressed alpha and beta genes from marsupials and placental mammals showed that: (1 because marsupials carry loci corresponding to DR, DP, DO and DM genes, those subregions most likely developed before the divergence of marsupials and placental mammals, approximately 150 million years ago (MYA; (2 conversely, the DQ and DY regions must have evolved later, but before the radiation of placental mammals (100 MYA. As a result, the typical genomic structure of MHC class II genes for the giant panda is similar to that of the other placental mammals and corresponds to BTNL2 approximately DR1 approximately DQ approximately DR2 approximately DY approximately DO_box approximately DP approximately COL11A2. Over the past 100 million years, there has been birth and death of mammalian DR, DQ, DY, and DP genes, an evolutionary process that has brought about the current species-specific genomic structure of the MHC class II region. Furthermore, facing certain similar pathogens, mammals have adopted intra-subregion (DR and DQ and inter-subregion (between DQ and DP

  10. An Investigation of Cellulose Digesting Bacteria in the Panda Gut Microbiome

    Science.gov (United States)

    Lu, M.; Leung, F. C.

    2014-12-01

    The Giant Panda (Ailuropoda melanoleuca) diet consists primarily of bamboo leaves, stems and shoots. However, the Giant Panda lacks genes for the enzymes needed to digest cellulose, the core component of bamboo. Thus, it is hypothesized that the cellulolytic digestion necessary for maintaining the Giant Panda diet is carried out by microbial symbionts in the panda gut microbiota. Fecal microbiota is used as surrogate index for gut microbiota since the Giant Panda is listed by the World Conservation Union as a Threatened Species. Two bacterial isolates with potential cellulolytic activity were isolated from Giant Panda fecal samples and cultured on selective media CMC (carboxymethyl cellulose) agar and CMC-Congo Red agar using various methods of inoculation. After incubation, clearance zones around colonies were observed and used as qualitative assays for cellulose digestion. Polymerase chain reaction amplification of the 16S rRNA gene was completed and species identification was done based on the BLAST result of 16S rRNA sequence obtained using Sanger sequencing. Once the cellulase activity is confirmed, genomic DNA of the bacteria will be extracted and used for whole genome shotgun sequencing. Illumina next generation sequencing platform will be adopted as it yields high-throughput information, providing a better understanding of cellulose digestion and the molecular genetic pathways to renewable sources of biofuels. Researchers have identified multiple cellulose-digesting microbes in the Giant Panda gut, but few have applied such bacteria in converting cellulose into glucose to create biofuel. Cellulosic ethanol, a biofuel, is produced through the fermentation of lignocellulosic biomasses. This anaerobic process is aided by cellulose-digesting enzymes. Certain microbes, such as those present in the Giant Panda gut, can produce enzymes that cleave the glycosidic bonds of cellulose (C6H10O5) into glucose molecules (C6H12O6), which can then be fermented into ethanol

  11. S Panda

    Indian Academy of Sciences (India)

    Home; Journals; Pramana – Journal of Physics. S Panda. Articles written in Pramana – Journal of Physics. Volume 56 Issue 6 June 2001 pp 809-822 Research Articles. Analytic methods for field induced tunneling in quantum wells with arbitrary potential profiles · S Panda B K Panda · More Details Abstract Fulltext PDF.

  12. Atmospheric deposition exposes Qinling pandas to toxic pollutants.

    Science.gov (United States)

    Chen, Yi-Ping; Zheng, Ying-Juan; Liu, Qiang; Song, Yi; An, Zhi-Sheng; Ma, Qing-Yi; Ellison, Aaron M

    2017-03-01

    The giant panda (Ailuropoda melanoleuca) is one of the most endangered animals in the world, and it is recognized worldwide as a symbol for conservation. A previous study showed that wild and captive pandas, especially those of the Qinling subspecies, were exposed to toxicants in their diet of bamboo; the ultimate origin of these toxicants is unknown. Here we show that atmospheric deposition is the most likely origin of heavy metals and persistent organic pollutants (POPs) in the diets of captive and wild Qinling pandas. Average atmospheric deposition was 199, 115, and 49 g·m -2 ·yr -1 in the center of Xi'an City, at China's Shaanxi Wild Animal Research Center (SWARC), and at Foping National Nature Reserve (FNNR), respectively. Atmospheric deposition of heavy metals (As, Cd, Cr, Pb, Hg, Co, Cu, Zn, Mn, and Ni) and POPs was highest at Xi'an City, intermediate at SWARC, and lowest at FNNR. Soil concentrations of the aforementioned heavy metals other than As and Zn also were significantly higher at SWARC than at FNNR. Efforts to conserve Qinling pandas may be compromised by air pollution attendant to China's economic development. Improvement of air quality and reductions of toxic emissions are urgently required to protect China's iconic species. © 2017 by the Ecological Society of America.

  13. Lactobacillus plantarum BSGP201683 Isolated from Giant Panda Feces Attenuated Inflammation and Improved Gut Microflora in Mice Challenged with Enterotoxigenic Escherichia coli

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    Qian Liu

    2017-09-01

    Full Text Available In this work, we searched for an effective probiotic that can help control intestinal infection, particularly enterotoxigenic Escherichia coli K88 (ETEC invasion, in giant panda (Ailuropoda melanoleuca. As a potential probiotic strain, Lactobacillus plantarum BSGP201683 (L. plantarum G83 was isolated from the feces of giant panda and proven beneficial in vitro. This study was aimed to evaluate the protective effect of L. plantarum G83 in mice challenged with ETEC. The mice were orally administered with 0.2 mL of PBS containing L. plantarum G83 at 0 colony-forming units (cfu mL−1 (control; negative control, ETEC group, 5.0 × 108 cfu mL−1 (LDLP, 5.0 × 109 cfu mL−1 (MDLP, and 5.0 × 1010 cfu mL−1 (HDLP for 14 consecutive days. At day 15, the mice (LDLP, MDLP, HDLP, and ETEC groups were challenged with ETEC and assessed at 0, 24, and 144 h. Animal health status; chemical and biological intestinal barriers; and body weight were measured. Results showed that L. plantarum G83 supplementation protected the mouse gut mainly by attenuating inflammation and improving the gut microflora. Most indices significantly changed at 24 h after challenge compared to those at 0 and 144 h. All treatment groups showed inhibited plasma diamine oxidase activity and D-lactate concentration. Tight-junction protein expression was down-regulated, and interleukin (IL-1β, IL-6, IL-8, TLR4, and MyD88 levels were up-regulated in the jejunum in the LDLP and MDLP groups. The number of the Enterobacteriaceae family and the heat-labile enterotoxin (LT gene decreased (P < 0.05 in the colons in the LDLP and MDLP groups. All data indicated that L. plantarum G83 could attenuate acute intestinal inflammation caused by ETEC infection, and the low and intermediate doses were superior to the high dose. These findings suggested that L. plantarum G83 may serve as a protective probiotic for intestinal disease and merits further investigation.

  14. Lactobacillus plantarum BSGP201683 Isolated from Giant Panda Feces Attenuated Inflammation and Improved Gut Microflora in Mice Challenged with Enterotoxigenic Escherichia coli.

    Science.gov (United States)

    Liu, Qian; Ni, Xueqin; Wang, Qiang; Peng, Zhirong; Niu, Lili; Wang, Hengsong; Zhou, Yi; Sun, Hao; Pan, Kangcheng; Jing, Bo; Zeng, Dong

    2017-01-01

    In this work, we searched for an effective probiotic that can help control intestinal infection, particularly enterotoxigenic Escherichia coli K88 (ETEC) invasion, in giant panda ( Ailuropoda melanoleuca ). As a potential probiotic strain, Lactobacillus plantarum BSGP201683 ( L. plantarum G83) was isolated from the feces of giant panda and proven beneficial in vitro . This study was aimed to evaluate the protective effect of L. plantarum G83 in mice challenged with ETEC. The mice were orally administered with 0.2 mL of PBS containing L. plantarum G83 at 0 colony-forming units (cfu) mL -1 (control; negative control, ETEC group), 5.0 × 10 8 cfu mL -1 (LDLP), 5.0 × 10 9 cfu mL -1 (MDLP), and 5.0 × 10 10 cfu mL -1 (HDLP) for 14 consecutive days. At day 15, the mice (LDLP, MDLP, HDLP, and ETEC groups) were challenged with ETEC and assessed at 0, 24, and 144 h. Animal health status; chemical and biological intestinal barriers; and body weight were measured. Results showed that L. plantarum G83 supplementation protected the mouse gut mainly by attenuating inflammation and improving the gut microflora. Most indices significantly changed at 24 h after challenge compared to those at 0 and 144 h. All treatment groups showed inhibited plasma diamine oxidase activity and D -lactate concentration. Tight-junction protein expression was down-regulated, and interleukin (IL)-1β, IL-6, IL-8, TLR4, and MyD88 levels were up-regulated in the jejunum in the LDLP and MDLP groups. The number of the Enterobacteriaceae family and the heat-labile enterotoxin (LT) gene decreased ( P < 0.05) in the colons in the LDLP and MDLP groups. All data indicated that L. plantarum G83 could attenuate acute intestinal inflammation caused by ETEC infection, and the low and intermediate doses were superior to the high dose. These findings suggested that L. plantarum G83 may serve as a protective probiotic for intestinal disease and merits further investigation.

  15. cDNA Cloning, Overexpression, Purification and Pharmacologic Evaluation for Anticancer Activity of Ribosomal Protein L23A Gene (RPL23A from the Giant Panda

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    Si-Nan Zhang

    2012-02-01

    Full Text Available RPL23A gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L23P family of ribosomal proteins, which is located in the cytoplasm. The purpose of this paper was to explore the structure and anti-cancer function of ribosomal protein L23A (RPL23A gene of the Giant Panda (Ailuropoda melanoleuca. The cDNA of RPL23A was cloned successfully from the Giant Panda using RT-PCR technology. We constructed a recombinant expression vector containing RPL23A cDNA and over-expressed it in Escherichia coli using pET28a plasmids. The expression product obtained was purified by using Ni chelating affinity chromatography. Recombinant protein of RPL23A obtained from the experiment acted on Hep-2 cells and human HepG-2 cells, then the growth inhibitory effect of these cells was observed by MTT (3-[4,5-dimethyl-2-thiazolyl]-2,5-diphenyl-2H-tetrazolium bromide assay. The result indicated that the length of the fragment cloned is 506 bp, and it contains an open-reading frame (ORF of 471 bp encoding 156 amino acids. Primary structure analysis revealed that the molecular weight of the putative RPL23A protein is 17.719 kDa with a theoretical pI 11.16. The molecular weight of the recombinant protein RPL23A is 21.265 kDa with a theoretical pI 10.57. The RPL23A gene can be really expressed in E. coli and the RPL23A protein, fusioned with the N-terminally His-tagged protein, gave rise to the accumulation of an expected 22 KDa polypeptide. The data showed that the recombinant protein RPL23A had a time- and dose-dependency on the cell growth inhibition rate. The data also indicated that the effect at low concentrations was better than at high concentrations on Hep-2 cells, and that the concentration of 0.185 μg/mL had the best rate of growth inhibition of 36.31%. All results of the experiment revealed that the recombinant protein RPL23A exhibited anti-cancer function on the Hep-2 cells. The study provides a scientific basis and aids

  16. Bamboo Classification Using WorldView-2 Imagery of Giant Panda Habitat in a Large Shaded Area in Wolong, Sichuan Province, China

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    Yunwei Tang

    2016-11-01

    Full Text Available This study explores the ability of WorldView-2 (WV-2 imagery for bamboo mapping in a mountainous region in Sichuan Province, China. A large area of this place is covered by shadows in the image, and only a few sampled points derived were useful. In order to identify bamboos based on sparse training data, the sample size was expanded according to the reflectance of multispectral bands selected using the principal component analysis (PCA. Then, class separability based on the training data was calculated using a feature space optimization method to select the features for classification. Four regular object-based classification methods were applied based on both sets of training data. The results show that the k-nearest neighbor (k-NN method produced the greatest accuracy. A geostatistically-weighted k-NN classifier, accounting for the spatial correlation between classes, was then applied to further increase the accuracy. It achieved 82.65% and 93.10% of the producer’s and user’s accuracies respectively for the bamboo class. The canopy densities were estimated to explain the result. This study demonstrates that the WV-2 image can be used to identify small patches of understory bamboos given limited known samples, and the resulting bamboo distribution facilitates the assessments of the habitats of giant pandas.

  17. Manashi Panda

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Chemical Sciences. Manashi Panda. Articles written in Journal of Chemical Sciences. Volume 119 Issue 1 January 2007 pp 3-9. Synthesis, structure, redox and spectra of green iridium complexes of tridentate azo-aromatic ligands · Manashi Panda Chayan Das Chen-Hsiung Hung Sreebrata ...

  18. Aurobinda Panda

    Indian Academy of Sciences (India)

    Home; Journals; Sadhana. Aurobinda Panda. Articles written in Sadhana. Volume 41 Issue 1 January 2016 pp 15-30. A single phase photovoltaic inverter control for grid connected system · Aurobinda Panda M K Pathak S P Srivastava · More Details Abstract Fulltext PDF. This paper presents a control scheme for single ...

  19. Panda code

    International Nuclear Information System (INIS)

    Altomare, S.; Minton, G.

    1975-02-01

    PANDA is a new two-group one-dimensional (slab/cylinder) neutron diffusion code designed to replace and extend the FAB series. PANDA allows for the nonlinear effects of xenon, enthalpy and Doppler. Fuel depletion is allowed. PANDA has a completely general search facility which will seek criticality, maximize reactivity, or minimize peaking. Any single parameter may be varied in a search. PANDA is written in FORTRAN IV, and as such is nearly machine independent. However, PANDA has been written with the present limitations of the Westinghouse CDC-6600 system in mind. Most computation loops are very short, and the code is less than half the useful 6600 memory size so that two jobs can reside in the core at once. (auth)

  20. Outcomes of conservative treatment of giant omphaloceles with dissodic 2% aqueous eosin: 15 years′ experience

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    B. D. Kouame

    2014-01-01

    Full Text Available Background: The surgical management of giant omphalocele is a surgical challenge with high mortality and morbidity in our country due to the absence of neonatal resuscitation. This study evaluates conservative management of giant omphalocele with dissodic 2% aqueous eosin. Materials and Methods: In the period from January 1997 to December 2012, giant omphaloceles were treated with dissodic 2% aqueous eosin. The procedure consisted of twice a day application of dissodic 2% aqueous eosin (sterile solution for topical application on the omphalocele sac. The procedure was taught to the mother to continue at home with an outpatient follow-up to assess epithelialization. We studied the duration of the hospital stay, the learning curve of the procedure by the mother, the complications, the duration and the percentage of complete epithelialization and the mortality. Results: A total of 173 giant omphaloceles had a conservative treatment with dissodic 2% aqueous eosin. The average hospital stay was 21 ± 6 days. The learning curve by the mother of the procedure was 10 ± 3 days. Complications of treatment were intestinal functional occlusion 22% and omphalocele sac infection 18%. The complete epithelialization of the omphaloceles sac after application of dissodic 2% aqueous eosin was 68.5%. Mortality was observed in 25.5%. Conclusion: Conservative treatment of giant omphaloceles by dissodic 2% aqueous eosin is a simple, efficient and a good alternative to surgery. The mother can easily learn its procedure which reduces the duration of hospital stay.

  1. The "double panda" sign in Leigh disease.

    Science.gov (United States)

    Sonam, Kothari; Bindu, P S; Gayathri, Narayanappa; Khan, Nahid Akhtar; Govindaraju, C; Arvinda, Hanumanthapura R; Nagappa, Madhu; Sinha, Sanjib; Thangaraj, K; Taly, Arun B

    2014-07-01

    Although the "face of the giant panda" sign on magnetic resonance imaging (MRI) is traditionally considered to be characteristic of Wilson disease, it has also been reported in other metabolic disorders. This study describes the characteristic "giant panda" sign on MRI in a child with Leigh disease. The diagnosis was based on the history of neurological regression; examination findings of oculomotor abnormalities, hypotonia, and dystonia; raised serum lactate levels; and characteristic brain stem and basal ganglia signal changes on MRI. The midbrain and pontine tegmental signal changes were consistent with the "face of the giant panda and her cub" sign. In addition to Wilson disease, metabolic disorders such as Leigh disease should also be considered in the differential diagnosis of this rare imaging finding. © The Author(s) 2013.

  2. Sustainable harvest, people and pandas: assessing a decade of managed wild harvest and trade in Schisandra sphenanthera.

    Science.gov (United States)

    Brinckmann, J A; Luo, W; Xu, Q; He, X; Wu, J; Cunningham, A B

    2018-06-05

    Endemic to China, the distribution of Schisandra sphenanthera Rehder & E.H.Wilson includes giant panda (Ailuropoda melanoleuca David, 1869) habitats in forests of the Minshan and Qinling Mountains, both inside and outside conservation areas. The fruit is used in indigenous medicines of the Qiang, Tibetan and Yi ethnic minorities of Sichuan. Also used in traditional Chinese medicine (TCM), indications for use are prescribed in the Chinese Pharmacopoeia. For continued access and medical use, survival of healthy populations depends on forests. Biodiversity conservation programmes implemented in forests within the panda landscapes that also benefit rural and indigenous communities, link future access to wild medicinal plants with survival of the panda and resilient rural economies. This study aimed at assessing the project activities, institutional-level outcomes and achievements, 10 years on, of the 5-year (2007-2011) UNDP- and WWF- supported EU-China Biodiversity Programme for sustainable, "panda-friendly" schisandra. Our study combined analysis of quantitative data such as purchase records coupled with qualitative data obtained from field work, project documents, site-visit reports, certification documents and published articles about the project. At start of project, interested companies were identified to support economic viability of the sustainable wild harvesting and a "panda friendly" pro-conservation model that provided an incentive to maintain habitat outside formal protected areas. Criteria of relevant sustainability standards, the Organic Wild-crop Harvesting Practice Standard and FairWild Standard, were applied while a new standard was drafted, the Giant Panda Friendly Products Standard. The initial pilot project involving 1 village determined feasibility leading to formation of the Pingwu Shuijing TCM Cooperative which, by 2016, scaled out to membership of 22 villages. From the cooperative's first commercial sale of S. sphenanthera Rehder & E

  3. Evidence of a false thumb in a fossil carnivore clarifies the evolution of pandas

    OpenAIRE

    Salesa, Manuel J.; Antón, Mauricio; Peigné, Stéphane; Morales, Jorge

    2005-01-01

    The “false thumb” of pandas is a carpal bone, the radial sesamoid, which has been enlarged and functions as an opposable thumb. If the giant panda (Ailuropoda melanoleuca) and the red panda (Ailurus fulgens) are not closely related, their sharing of this adaptation implies a remarkable convergence. The discovery of previously unknown postcranial remains of a Miocene red panda relative, Simocyon batalleri, from the Spanish site of Batallones-1 (Madrid), now shows that this animal had a false t...

  4. Jagannath Panda

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Chemical Sciences. Jagannath Panda. Articles written in Journal of Chemical Sciences. Volume 112 Issue 6 December 2000 pp 615-622 Physical and Theoretical. Kinetic investigation of the oxidation of N-alkyl anilines by peroxomonophosphoric acid in anionic surfactant sodium lauryl sulphate.

  5. Tracing the origin of the panda's thumb

    Science.gov (United States)

    Abella, Juan; Pérez-Ramos, Alejandro; Valenciano, Alberto; Alba, David M.; Ercoli, Marcos D.; Hontecillas, Daniel; Montoya, Plinio; Morales, Jorge

    2015-06-01

    We investigate the relative development of the carnivoran radial sesamoids to untangle the evolution of this iconic structure. In the pandas (both giant and red), this `false thumb' is known to perform a grasping role during bamboo feeding in both the red and giant pandas. An original locomotor role has been inferred for ailurids, but this remains to be ascertained for ursids. A large sample of radial sesamoids of Indarctos arctoides from the Miocene of Batallones-3 (Spain) indicates that this early ailuropodine bear displayed a relatively hypertrophied radial sesamoid, with a configuration more similar to that of the red panda and other carnivorans than to that of giant pandas. This false thumb is the first evidence of this feature in the Ursidae, which can be linked to a more herbivorous diet. Moreover, in the two extant pandas, the false thumb should not be interpreted as an anatomical convergence, but as an exaptive convergence regarding its use during the bamboo feeding, which changes the evolutionary view of this singular structure.

  6. Characterization of the gut microbiota in the red panda (Ailurus fulgens.

    Directory of Open Access Journals (Sweden)

    Fanli Kong

    Full Text Available The red panda is the only living species of the genus Ailurus. Like giant pandas, red pandas are also highly specialized to feed mainly on highly fibrous bamboo. Although several studies have focused on the gut microbiota in the giant panda, little is known about the gut microbiota of the red panda. In this study, we characterized the fecal microbiota from both wild (n = 16 and captive (n = 6 red pandas using a pyrosequecing based approach targeting the V1-V3 hypervariable regions of the 16S rRNA gene. Distinct bacterial communities were observed between the two groups based on both membership and structure. Wild red pandas maintained significantly higher community diversity, richness and evenness than captive red pandas, the communities of which were skewed and dominated by taxa associated with Firmicutes. Phylogenetic analysis of the top 50 OTUs revealed that 10 of them were related to known cellulose degraders. To the best of our knowledge, this is the first study of the gut microbiota of the red panda. Our data suggest that, similar to the giant panda, the gut microbiota in the red panda might also play important roles in the digestion of bamboo.

  7. Characterization of the gut microbiota in the red panda (Ailurus fulgens).

    Science.gov (United States)

    Kong, Fanli; Zhao, Jiangchao; Han, Shushu; Zeng, Bo; Yang, Jiandong; Si, Xiaohui; Yang, Benqing; Yang, Mingyao; Xu, Huailiang; Li, Ying

    2014-01-01

    The red panda is the only living species of the genus Ailurus. Like giant pandas, red pandas are also highly specialized to feed mainly on highly fibrous bamboo. Although several studies have focused on the gut microbiota in the giant panda, little is known about the gut microbiota of the red panda. In this study, we characterized the fecal microbiota from both wild (n = 16) and captive (n = 6) red pandas using a pyrosequecing based approach targeting the V1-V3 hypervariable regions of the 16S rRNA gene. Distinct bacterial communities were observed between the two groups based on both membership and structure. Wild red pandas maintained significantly higher community diversity, richness and evenness than captive red pandas, the communities of which were skewed and dominated by taxa associated with Firmicutes. Phylogenetic analysis of the top 50 OTUs revealed that 10 of them were related to known cellulose degraders. To the best of our knowledge, this is the first study of the gut microbiota of the red panda. Our data suggest that, similar to the giant panda, the gut microbiota in the red panda might also play important roles in the digestion of bamboo.

  8. Genomic Inbreeding and Relatedness in Wild Panda Populations.

    Science.gov (United States)

    Garbe, John R; Prakapenka, Dzianis; Tan, Cheng; Da, Yang

    2016-01-01

    Inbreeding and relatedness in wild panda populations are important parameters for panda conservation. Habitat loss and fragmentation are expected to increase inbreeding but the actual inbreeding levels in natural panda habitats were unknown. Using 150,025 SNPs and 14,926 SNPs selected from published whole-genome sequences, we estimated genomic inbreeding coefficients and relatedness of 49 pandas including 34 wild pandas sampled from six habitats. Qinling and Liangshan pandas had the highest levels of inbreeding and relatedness measured by genomic inbreeding and coancestry coefficients, whereas the inbreeding levels in Qionglai and Minshan were 28-45% of those in Qinling and Liangshan. Genomic coancestry coefficients between pandas from different habitats showed that panda populations from the four largest habitats, Minshan, Qionglai, Qinling and Liangshan, were genetically unrelated. Pandas between these four habitats on average shared 66.0-69.1% common alleles and 45.6-48.6% common genotypes, whereas pandas within each habitat shared 71.8-77.0% common alleles and 51.7-60.4% common genotypes. Pandas in the smaller populations of Qinling and Liangshan were more similarly to each other than pandas in the larger populations of Qionglai and Minshan according to three genomic similarity measures. Panda genetic differentiation between these habitats was positively related to their geographical distances. Most pandas separated by 200 kilometers or more shared no common ancestral alleles. The results provided a genomic quantification of the actual levels of inbreeding and relatedness among pandas in their natural habitats, provided genomic confirmation of the relationship between genetic diversity and geographical distances, and provided genomic evidence to the urgency of habitat protection.

  9. Genomic Inbreeding and Relatedness in Wild Panda Populations

    Science.gov (United States)

    Da, Yang

    2016-01-01

    Inbreeding and relatedness in wild panda populations are important parameters for panda conservation. Habitat loss and fragmentation are expected to increase inbreeding but the actual inbreeding levels in natural panda habitats were unknown. Using 150,025 SNPs and 14,926 SNPs selected from published whole-genome sequences, we estimated genomic inbreeding coefficients and relatedness of 49 pandas including 34 wild pandas sampled from six habitats. Qinling and Liangshan pandas had the highest levels of inbreeding and relatedness measured by genomic inbreeding and coancestry coefficients, whereas the inbreeding levels in Qionglai and Minshan were 28–45% of those in Qinling and Liangshan. Genomic coancestry coefficients between pandas from different habitats showed that panda populations from the four largest habitats, Minshan, Qionglai, Qinling and Liangshan, were genetically unrelated. Pandas between these four habitats on average shared 66.0–69.1% common alleles and 45.6–48.6% common genotypes, whereas pandas within each habitat shared 71.8–77.0% common alleles and 51.7–60.4% common genotypes. Pandas in the smaller populations of Qinling and Liangshan were more similarly to each other than pandas in the larger populations of Qionglai and Minshan according to three genomic similarity measures. Panda genetic differentiation between these habitats was positively related to their geographical distances. Most pandas separated by 200 kilometers or more shared no common ancestral alleles. The results provided a genomic quantification of the actual levels of inbreeding and relatedness among pandas in their natural habitats, provided genomic confirmation of the relationship between genetic diversity and geographical distances, and provided genomic evidence to the urgency of habitat protection. PMID:27494031

  10. Evolutionary history and identification of conservation units in the giant otter, Pteronura brasiliensis.

    Science.gov (United States)

    Pickles, R S A; Groombridge, J J; Zambrana Rojas, V D; Van Damme, P; Gottelli, D; Kundu, S; Bodmer, R; Ariani, C V; Iyengar, A; Jordan, W C

    2011-12-01

    The giant otter, Pteronura brasiliensis, occupies a range including the major drainage basins of South America, yet the degree of structure that exists within and among populations inhabiting these drainages is unknown. We sequenced portions of the mitochondrial DNA (mtDNA) cytochrome b (612bp) and control region (383 bp) genes in order to determine patterns of genetic variation within the species. We found high levels of mtDNA haplotype diversity (h = 0.93 overall) and support for subdivision into four distinct groups of populations, representing important centers of genetic diversity and useful units for prioritizing conservation within the giant otter. We tested these results against the predictions of three hypotheses of Amazonian diversification (Pleistocene Refugia, Paleogeography, and Hydrogeology). While the phylogeographic pattern conformed to the predictions of the Refugia Hypothesis, molecular dating using a relaxed clock revealed the phylogroups diverged from one another between 1.69 and 0.84 Ma, ruling out the influence of Late Pleistocene glacial refugia. However, the role of Plio-Pleistocene climate change could not be rejected. While the molecular dating also makes the influence of geological arches according to the Paleogeography Hypothesis extremely unlikely, the recent Pliocene formation of the Fitzcarrald Arch and its effect of subsequently altering drainage pattern could not be rejected. The data presented here support the interactions of both climatic and hydrological changes resulting from geological activity in the Plio-Pleistocene, in shaping the phylogeographic structure of the giant otter. Copyright © 2011 Elsevier Inc. All rights reserved.

  11. Panda crosses the Atlantic

    International Nuclear Information System (INIS)

    Anon.

    1999-01-01

    The development of the Panda software by Electricite de France (EdF) for monitoring hydroelectric power plants is traced from the early stages using TAM-TAM software for the Macintosh for data acquisition, checking, transfer to external sites, and archiving, to the development of Panda software in order to make the software compatible with remote measurement systems. The installation of Panda at two Argentinian hydroelectric power stations by EdF to make the monitoring of systems more reliable is reported, and the different chain of operations carried out by Panda are described. Panda's technical data, and simple data collection systems are outlined. (UK)

  12. Hearing sensitivity in context: Conservation implications for a highly vocal endangered species

    Directory of Open Access Journals (Sweden)

    Megan A. Owen

    2016-04-01

    Full Text Available Hearing sensitivity is a fundamental determinant of a species’ vulnerability to anthropogenic noise, however little is known about the hearing capacities of most conservation dependent species. When audiometric data are integrated with other aspects of species’ acoustic ecology, life history, and characteristic habitat topography and soundscape, predictions can be made regarding probable vulnerability to the negative impacts of different types of anthropogenic noise. Here we used an adaptive psychoacoustic technique to measure hearing thresholds in the endangered giant panda; a species that uses acoustic communication to coordinate reproduction. Our results suggest that giant pandas have functional hearing into the ultrasonic range, with good sensitivity between 10.0 and 16.0 kHz, and best sensitivity measured at 12.5–14.0 kHz. We estimated the lower and upper limits of functional hearing as 0.10 and 70.0 kHz respectively. While these results suggest that panda hearing is similar to that of some other terrestrial carnivores, panda hearing thresholds above 14.0 kHz were significantly lower (i.e., more sensitive than those of the polar bear, the only other bear species for which data are available. We discuss the implications of this divergence, as well as the relationship between hearing sensitivity and the spectral parameters of panda vocalizations. We suggest that these data, placed in context, can be used towards the development of a sensory-based model of noise disturbance for the species.

  13. PANDA Muon System Prototype

    Science.gov (United States)

    Abazov, Victor; Alexeev, Gennady; Alexeev, Maxim; Frolov, Vladimir; Golovanov, Georgy; Kutuzov, Sergey; Piskun, Alexei; Samartsev, Alexander; Tokmenin, Valeri; Verkheev, Alexander; Vertogradov, Leonid; Zhuravlev, Nikolai

    2018-04-01

    The PANDA Experiment will be one of the key experiments at the Facility for Antiproton and Ion Research (FAIR) which is under construction now in the territory of the GSI Helmholtz Centre for Heavy Ion Research in Darmstadt, Germany. PANDA is aimed to study hadron spectroscopy and various topics of the weak and strong forces. Muon System is chosen as the most suitable technology for detecting the muons. The Prototype of the PANDA Muon System is installed on the test beam line T9 at the Proton Synchrotron (PS) at CERN. Status of the PANDA Muon System prototype is presented with few preliminary results.

  14. PANDA Muon System Prototype

    Directory of Open Access Journals (Sweden)

    Abazov Victor

    2018-01-01

    Full Text Available The PANDA Experiment will be one of the key experiments at the Facility for Antiproton and Ion Research (FAIR which is under construction now in the territory of the GSI Helmholtz Centre for Heavy Ion Research in Darmstadt, Germany. PANDA is aimed to study hadron spectroscopy and various topics of the weak and strong forces. Muon System is chosen as the most suitable technology for detecting the muons. The Prototype of the PANDA Muon System is installed on the test beam line T9 at the Proton Synchrotron (PS at CERN. Status of the PANDA Muon System prototype is presented with few preliminary results.

  15. Bikash Kumar Panda

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Chemical Sciences. Bikash Kumar Panda. Articles written in Journal of Chemical Sciences. Volume 116 Issue 5 August 2004 pp 245-250. Synthesis, characterization and emission properties of quinolin-8-olato chelated ruthenium organometallics · Bikash Kumar Panda · More Details Abstract ...

  16. S P Panda

    Indian Academy of Sciences (India)

    Home; Journals; Sadhana. S P Panda. Articles written in Sadhana. Volume 40 Issue 1 February 2015 pp 89-106 Electrical and Computer Sciences. Experimental validation of waveform relaxation technique for power system controller testing · S P Panda K A Salunkhe A M Kulkarni · More Details Abstract Fulltext PDF.

  17. Vaccine-induced canine distemper in a lesser panda.

    Science.gov (United States)

    Bush, M; Montali, R J; Brownstein, D; James, A E; Appel, M J

    1976-11-01

    A fatal disease occurred in a lesser panda (Ailurus fulgens) 2 weeks after vaccination with modified live distemper vaccine. The disease clinically resembled canine distemper. Pathologically there was giant cell pneumonia, with canine distemper viral inclusion bodies in pulmonary and digestive tract epithelium. Viral isolates were indicative of an attenuated strain rather than virulent types.

  18. Assisted reproductive technology in bear (ursidae) conservation Ailuropoda Melanoleuca, Ursus Arctos and Usus Maritimus

    OpenAIRE

    Baldoví Sánchez, Isabel; Universitat Autònoma de Barcelona. Facultat de Veterinària

    2014-01-01

    Póster The Ursidae family is severely threatened having 6 of the 8 bear species in danger of extinction. Due to its reproductive physiology characteristics, ursids have a low reproduction rate which aggravates in captivity. It is because of this, that reproductive assisted technology has become a key element in the conservation of this species. The following study is the compendium of the obtained results in this field in three ursid species: giant panda (Auliropoda melanoleuca), brown bea...

  19. Molecular cloning and sequence analysis of VP6 gene of giant ...

    African Journals Online (AJOL)

    Jane

    2011-10-24

    Oct 24, 2011 ... G), and the major structural protein of inner capsid particles (ICP), and also specific antigen of mucosa immunization that mediate specific immunological reaction. In this report, sequence analysis of VP6 gene of giant panda rotavirus was carried out. Full-length VP6 gene encoding for ICP of giant panda.

  20. PANDA electromagnetic calorimeters

    International Nuclear Information System (INIS)

    Semenov, P.A.; Kharlov, Yu.V.; Uzunian, A.V.; Chernichenko, S.K.; Derevschikov, A.A.; Davidenko, A.M.; Goncharenko, Y.M.; Kachanov, V.A.; Konstantinov, A.S.; Kormilitsin, V.A.; Matulenko, Yu.A.; Meschanin, A.P.; Melnick, Y.M.; Minaev, N.G.; Mochalov, V.V.; Morozov, D.A.; Novotny, R.W.; Ryazantsev, A.A.; Soldatov, A.P.; Soloviev, L.F.

    2009-01-01

    PANDA is a challenging experimental setup to be implemented at the high-energy storage ring (HESR) at the international facility FAIR, GSI (Germany). PANDA physics program relies heavily on the capability to measure photons with excellent energy, position and timing resolution. For this purpose PANDA proposed to employ electromagnetic calorimeters using two different technologies: compact crystal calorimeter cooled to -25 deg. C around target and lead-scintillator sandwich calorimeter with optical fibers light collection (so-called shashlyk calorimeter) in the forward region. Institute for High Energy Physics (IHEP) PANDA group reports on two types of measurements performed at IHEP, Protvino: radiation hardness of the PWO crystals at -25 deg. C and testbeam studies of the energy and position resolution of the shashlyk calorimeter prototype in the energy range up to 19 GeV.

  1. The first PANDA tests

    International Nuclear Information System (INIS)

    Dreier, J.; Huggenberger, M.; Aubert, C.

    1996-01-01

    The PANDA test facility at PSI in Switzerland is used to study the long-term Simplified Boiling Water Reactor (SBWR) Passive Containment Cooling System (PCCS) performance. The PANDA tests demonstrate performance on a larger scale than previous tests and examine the effects of any non-uniform spatial distributions of steam and non-condensables in the system. The PANDA facility has a 1:1 vertical scale, and 1:25 ''system'' scale (volume, power, etc.). Steady-state PCCS condenser performance tests and extensive facility characterization tests have been completed. Transient system behavior tests were conducted late in 1995; results from the first three transient tests (M3 series) are reviewed. The first PANDA tests showed that the overall global behavior of the SBWR containment was globally repeatable and very favorable; the system exhibited great ''robustness.''

  2. A K Panda

    Indian Academy of Sciences (India)

    Home; Journals; Bulletin of Materials Science. A K Panda. Articles written in Bulletin of Materials Science. Volume 25 Issue 6 November 2002 pp 573-575. Influence of quench rates on the properties of rapidly solidified FeNbCuSiB alloy · A K Panda I Chattoraj S Basu A Mitra · More Details Abstract Fulltext PDF. FeNbCuSiB ...

  3. Musical Interests and Talent: Twin Jazz Musicians and Twin Studies/Twin Research: Loss of a Preterm Multiple; Conjoined Twin Conception; Depression in Fathers of Twins; Twin-to-Twin Transfusion Syndrome/Twin News: High-Achieving Twins; Twin Children of a Tennis Star; Conjoined Twin Separation; Twin Delivery to a Giant Panda.

    Science.gov (United States)

    Segal, Nancy L

    2017-12-01

    Findings from twin studies of musical interests and talent are reviewed as a backdrop to the lives and careers of twin jazz musicians, Peter and Will Anderson. The Anderson twins exemplify many aspects of twin research, namely their matched musical abilities, shared musical interests, and common career. This overview is followed by reviews of studies and case reports of bereavement in families who have lost a preterm multiple birth infant, the conception of conjoined twins following in vitro fertilization (IVF), depression in fathers of twins, and twin-to-twin transfusion incidence in monochorionic-diamniotic IVF twin pairs. Twins highlighted in the media include high-achieving identical female twins with nearly identical academic standing, tennis star Roger Federer's two sets of identical twin children, surgical separation of craniopagus conjoined twins, and the rare delivery of twins to a 23-year-old giant panda.

  4. Panda, Prof. Sudhakar

    Indian Academy of Sciences (India)

    Fellow Profile. Elected: 2017 Section: Physics. Panda, Prof. Sudhakar Ph.D. (IoP, Bhubaneswar), FNA, FNASc. Date of birth: 23 February 1959. Specialization: High Energy Physics, String Theory, Cosmology, Quantum Field Theory Address: Director, Institute of Physics, Sachivalaya Marg, Bhubaneswar 751 005, Orissa

  5. The PANDA Barrel DIRC

    Science.gov (United States)

    Schwiening, J.; Ali, A.; Belias, A.; Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Kalicy, G.; Krebs, M.; Lehmann, D.; Nerling, F.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwarz, C.; Traxler, M.; Böhm, M.; Eyrich, W.; Lehmann, A.; Pfaffinger, M.; Uhlig, F.; Düren, M.; Etzelmüller, E.; Föhl, K.; Hayrapetyan, A.; Kreutzfeld, K.; Merle, O.; Rieke, J.; Schmidt, M.; Wasem, T.; Achenbach, P.; Cardinali, M.; Hoek, M.; Lauth, W.; Schlimme, S.; Sfienti, C.; Thiel, M.

    2018-03-01

    The PANDA experiment at the international accelerator Facility for Antiproton and Ion Research in Europe (FAIR) near GSI, Darmstadt, Germany will address fundamental questions of hadron physics. Excellent Particle Identification (PID) over a large range of solid angles and particle momenta will be essential to meet the objectives of the rich physics program. Charged PID for the barrel region of the PANDA target spectrometer will be provided by a DIRC (Detection of Internally Reflected Cherenkov light) detector. The Barrel DIRC will cover the polar angle range of 22o-140o and cleanly separate charged pions from kaons for momenta between 0.5 GeV/c and 3.5 GeV/c with a separation power of at least 3 standard deviations. The design is based on the successful BABAR DIRC and the SuperB FDIRC R&D with several important improvements to optimize the performance for PANDA, such as a focusing lens system, fast timing, a compact fused silica prism as expansion region, and lifetime-enhanced Microchannel-Plate PMTs for photon detection. This article describes the technical design of the PANDA Barrel DIRC and the result of the design validation using a "vertical slice" prototype in hadronic particle beams at the CERN PS.

  6. amiya kumar panda

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Chemical Sciences. AMIYA KUMAR PANDA. Articles written in Journal of Chemical Sciences. Volume 130 Issue 4 April 2018 pp 42. Role of PEG 2000 in the surface modification and physicochemical characteristics of pyrazinamide loaded nanostructured lipid carriers · GOURAB KARMAKAR ...

  7. Panda, Dr Subrat Kumar

    Indian Academy of Sciences (India)

    Panda, Dr Subrat Kumar M.B.B.S. (Utkal), M.D. (Path.) (AIIMS), FNA. Date of birth: 18 November 1954. Specialization: Liver Pathology, Viral Hepatitis and Molecular Biology/Virology Address: Professor, Department of Pathology, All India Institute of Medical Sciences, Ansari Nagar, New Delhi 110 029, U.T.. Contact:

  8. S K Panda

    Indian Academy of Sciences (India)

    Home; Journals; Sadhana. S K Panda. Articles written in Sadhana. Volume 37 Issue 2 April 2012 pp 223-240. Multi-objective parametric optimization of powder mixed electro-discharge machining using response surface methodology and non-dominated sorting genetic algorithm · Soumyakant Padhee Niharranjan Nayak ...

  9. Tarun K Panda

    Indian Academy of Sciences (India)

    Tarun K Panda. Articles written in Journal of Chemical Sciences. Volume 126 Issue 5 September 2014 pp 1463-1475 Special issue on Chemical Crystallography. Synthesis of monomeric and polymeric alkali and alkaline earth metal complexes using a phosphinoselenoic amide ligand in metal coordination sphere.

  10. B N Panda

    Indian Academy of Sciences (India)

    Home; Journals; Pramana – Journal of Physics. B N Panda. Articles written in Pramana – Journal of Physics. Volume 77 Issue 4 October 2011 pp 715-726 Research Articles. Effect of hybridization and dispersion of quasiparticles on the coexistent state of superconductivity and antiferromagnetism in Ni2B2C · B K Sahoo ...

  11. Metabolic rate of the red panda, Ailurus fulgens, a dietary bamboo specialist.

    Science.gov (United States)

    Fei, Yuxiang; Hou, Rong; Spotila, James R; Paladino, Frank V; Qi, Dunwu; Zhang, Zhihe

    2017-01-01

    The red panda (Ailurus fulgens) has a similar diet, primarily bamboo, and shares the same habitat as the giant panda, Ailuropoda melanoleuca. There are considerable efforts underway to understand the ecology of the red panda and to increase its populations in natural reserves. Yet it is difficult to design an effective strategy for red panda reintroduction if we do not understand its basic biology. Here we report the resting metabolic rate of the red panda and find that it is higher than previously measured on animals from a zoo. The resting metabolic rate was 0.290 ml/g/h (range 0.204-0.342) in summer and 0.361 ml/g/h in winter (range 0.331-0.406), with a statistically significant difference due to season and test temperature. Temperatures in summer were probably within the thermal neutral zone for metabolism but winter temperatures were below the thermal neutral zone. There was no difference in metabolic rate between male and female red pandas and no difference due to mass. Our values for metabolic rate were much higher than those measured by McNab for 2 red pandas from a zoo. The larger sample size (17), more natural conditions at the Panda Base and improved accuracy of the metabolic instruments provided more accurate metabolism measurements. Contrary to our expectations based on their low quality bamboo diet, the metabolic rates of red pandas were similar to mammals of the same size. Based on their metabolic rates red pandas would not be limited by their food supply in natural reserves.

  12. Metabolic rate of the red panda, Ailurus fulgens, a dietary bamboo specialist.

    Directory of Open Access Journals (Sweden)

    Yuxiang Fei

    Full Text Available The red panda (Ailurus fulgens has a similar diet, primarily bamboo, and shares the same habitat as the giant panda, Ailuropoda melanoleuca. There are considerable efforts underway to understand the ecology of the red panda and to increase its populations in natural reserves. Yet it is difficult to design an effective strategy for red panda reintroduction if we do not understand its basic biology. Here we report the resting metabolic rate of the red panda and find that it is higher than previously measured on animals from a zoo. The resting metabolic rate was 0.290 ml/g/h (range 0.204-0.342 in summer and 0.361 ml/g/h in winter (range 0.331-0.406, with a statistically significant difference due to season and test temperature. Temperatures in summer were probably within the thermal neutral zone for metabolism but winter temperatures were below the thermal neutral zone. There was no difference in metabolic rate between male and female red pandas and no difference due to mass. Our values for metabolic rate were much higher than those measured by McNab for 2 red pandas from a zoo. The larger sample size (17, more natural conditions at the Panda Base and improved accuracy of the metabolic instruments provided more accurate metabolism measurements. Contrary to our expectations based on their low quality bamboo diet, the metabolic rates of red pandas were similar to mammals of the same size. Based on their metabolic rates red pandas would not be limited by their food supply in natural reserves.

  13. Biogeography of Parasitic Nematode Communities in the Galápagos Giant Tortoise: Implications for Conservation Management.

    Directory of Open Access Journals (Sweden)

    Guillaume Fournié

    Full Text Available The Galápagos giant tortoise is an icon of the unique, endemic biodiversity of Galápagos, but little is known of its parasitic fauna. We assessed the diversity of parasitic nematode communities and their spatial distributions within four wild tortoise populations comprising three species across three Galápagos islands, and consider their implication for Galápagos tortoise conservation programmes. Coprological examinations revealed nematode eggs to be common, with more than 80% of tortoises infected within each wild population. Faecal samples from tortoises within captive breeding centres on Santa Cruz, Isabela and San Cristobal islands also were examined. Five different nematode egg types were identified: oxyuroid, ascarid, trichurid and two types of strongyle. Sequencing of the 18S small-subunit ribosomal RNA gene from adult nematodes passed with faeces identified novel sequences indicative of rhabditid and ascaridid species. In the wild, the composition of nematode communities varied according to tortoise species, which co-varied with island, but nematode diversity and abundance were reduced or altered in captive-reared animals. Evolutionary and ecological factors are likely responsible for the variation in nematode distributions in the wild. This possible species/island-parasite co-evolution has not been considered previously for Galápagos tortoises. We recommend that conservation efforts, such as the current Galápagos tortoise captive breeding/rearing and release programme, be managed with respect to parasite biogeography and host-parasite co-evolutionary processes in addition to the biogeography of the host.

  14. Lethal giant larvae 1 tumour suppressor activity is not conserved in models of mammalian T and B cell leukaemia.

    Directory of Open Access Journals (Sweden)

    Edwin D Hawkins

    Full Text Available In epithelial and stem cells, lethal giant larvae (Lgl is a potent tumour suppressor, a regulator of Notch signalling, and a mediator of cell fate via asymmetric cell division. Recent evidence suggests that the function of Lgl is conserved in mammalian haematopoietic stem cells and implies a contribution to haematological malignancies. To date, direct measurement of the effect of Lgl expression on malignancies of the haematopoietic lineage has not been tested. In Lgl1⁻/⁻ mice, we analysed the development of haematopoietic malignancies either alone, or in the presence of common oncogenic lesions. We show that in the absence of Lgl1, production of mature white blood cell lineages and long-term survival of mice are not affected. Additionally, loss of Lgl1 does not alter leukaemia driven by constitutive Notch, c-Myc or Jak2 signalling. These results suggest that the role of Lgl1 in the haematopoietic lineage might be restricted to specific co-operating mutations and a limited number of cellular contexts.

  15. Lethal Giant Larvae 1 Tumour Suppressor Activity Is Not Conserved in Models of Mammalian T and B Cell Leukaemia

    Science.gov (United States)

    Hawkins, Edwin D.; Oliaro, Jane; Ramsbottom, Kelly M.; Ting, Stephen B.; Sacirbegovic, Faruk; Harvey, Michael; Kinwell, Tanja; Ghysdael, Jacques; Johnstone, Ricky W.; Humbert, Patrick O.; Russell, Sarah M.

    2014-01-01

    In epithelial and stem cells, lethal giant larvae (Lgl) is a potent tumour suppressor, a regulator of Notch signalling, and a mediator of cell fate via asymmetric cell division. Recent evidence suggests that the function of Lgl is conserved in mammalian haematopoietic stem cells and implies a contribution to haematological malignancies. To date, direct measurement of the effect of Lgl expression on malignancies of the haematopoietic lineage has not been tested. In Lgl1−/− mice, we analysed the development of haematopoietic malignancies either alone, or in the presence of common oncogenic lesions. We show that in the absence of Lgl1, production of mature white blood cell lineages and long-term survival of mice are not affected. Additionally, loss of Lgl1 does not alter leukaemia driven by constitutive Notch, c-Myc or Jak2 signalling. These results suggest that the role of Lgl1 in the haematopoietic lineage might be restricted to specific co-operating mutations and a limited number of cellular contexts. PMID:24475281

  16. Habitat correlates of the red panda in the temperate forests of Bhutan.

    Directory of Open Access Journals (Sweden)

    Sangay Dorji

    Full Text Available Anthropogenic activities and associated global climate change are threatening the biodiversity in the Himalayas against a backdrop of poor knowledge of the region's threatened species. The red panda (Ailurus fulgens is a threatened mammal confined to the eastern Himalayas, and because of Bhutan's central location in the distributional range of red pandas, its forests are integral to the long-term viability of wild populations. Detailed habitat requirements of the red panda are largely speculative, and there is virtually no ecological information available on this species in Bhutan. Between 2007 and 2009, we established 615 presence/absence plots in a systematic sampling of resident habitat types within Jigme Dorji and Thrumshingla National Parks, Bhutan, to investigate broad and fine-scale red panda habitat associations. Additional locality records of red pandas were obtained from interviewing 664 park residents. Red pandas were generally confined to cool broadleaf and conifer forests from 2,110-4,389 m above sea level (asl, with the majority of records between 2,400-3,700 m asl on south and east-facing slopes. At a finer scale, multivariate analysis revealed that red pandas were strongly associated with old growth Bhutan Fir (Abies densa forest dominated by a dense cover of Yushania and Arundanaria bamboo with a high density of fallen logs and tree stumps at ground level; a high density of trees, dead snags, and rhododendron shrubs in the mid-storey; and locations that were close to water. Because Bhutan's temperate forests that encompass prime red panda habitat are also integral to human subsistence and socio-economic development, there exists an inadvertent conflict between the needs of people and red pandas. As such, careful sustainable management of Bhutan's temperate forests is necessary if a balance is to be met between the socioeconomic needs of people and the conservation goals for red pandas.

  17. Genetic assessment of captive red panda (Ailurus fulgens) population.

    Science.gov (United States)

    Kumar, Arun; Rai, Upashna; Roka, Bhupen; Jha, Alankar K; Reddy, P Anuradha

    2016-01-01

    Red panda (Ailurus fulgens) is threatened across its range by detrimental human activities and rapid habitat changes necessitating captive breeding programs in various zoos globally to save this flagship species from extinction. One of the ultimate aims of ex situ conservation is reintroduction of endangered animals into their natural habitats while maintaining 90 % of the founder genetic diversity. Advances in molecular genetics and microsatellite genotyping techniques make it possible to accurately estimate genetic diversity of captive animals of unknown ancestry. Here we assess genetic diversity of the red panda population in Padmaja Naidu Himalayan Zoological Park, Darjeeling, which plays a pivotal role in ex situ conservation of red panda in India. We generated microsatellite genotypes of fifteen red pandas with a set of fourteen loci. This population is genetically diverse with 68 % observed heterozygosity (H O ) and mean inbreeding (F IS ) coefficient of 0.05. However population viability analysis reveals that this population has a very low survival probability (<2 %) and will rapidly loose its genetic diversity to 37 % mainly due to small population size and skewed male-biased sex ratio. Regular supplementation with a pair of adult individuals every five years will increase survival probability and genetic diversity to 99 and 61 % respectively and will also support future harvesting of individuals for reintroduction into the wild and exchange with other zoos.

  18. RADIOGRAPHIC THORACIC ANATOMY OF THE RED PANDA (AILURUS FULGENS).

    Science.gov (United States)

    Makungu, Modesta; du Plessis, Wencke M; Barrows, Michelle; Groenewald, Hermanus B; Koeppel, Katja N

    2016-09-01

    The red panda ( Ailurus fulgens ) is classified as an endangered species by the International Union for Conservation of Nature and Natural Resources. The natural distribution of the red panda is in the Himalayas and southern China. Thoracic diseases such as dirofilariasis, hypertrophic cardiomyopathy, tracheal obstruction, lung worm infestation, and pneumonia have been reported in the red panda. The aim of this study was to describe the normal radiographic thoracic anatomy of captive red pandas as a species-specific reference for routine health examinations and clinical cases. Right lateral (RL) and dorsoventral (DV) inspiratory phase views of the thorax were obtained in 11 adult captive red pandas. Measurements were made and ratios calculated to establish reference ranges for the mean vertebral heart score on the RL (8.34 ± 0.25) and DV (8.78 ± 0.34) views and the mean ratios of the caudal vena cava diameter to the vertebral body length above tracheal bifurcation (0.67 ± 0.05) and tracheal diameter to the width of the third rib (2.75 ± 0.24). The majority of animals (10/11) had 14 thoracic vertebrae, except for one animal that had 15 thoracic vertebrae. Rudimentary clavicles were seen in 3/11 animals. The ovoid, oblique cardiac silhouette was more horizontally positioned and elongated in older animals. A redundant aortic arch was seen in the oldest animal. The trachea was seen with mineralized cartilage rings in all animals. The carina was clearly seen in the majority of animals (10/11). Variations exist in the normal radiographic thoracic anatomy of different species. Knowledge of the normal radiographic thoracic anatomy of the red panda should prove useful for routine health examinations and in the diagnosis of thoracic diseases.

  19. The Detector Control of the PANDA Experiment

    International Nuclear Information System (INIS)

    Feldbauer, F

    2014-01-01

    The PANDA experiment will be built at the antiproton storage ring HESR, a part of the new accelerator facility FAIR in Darmstadt, Germany. PANDA aims amongst other topics for high precision measurements in hadron spectroscopy and search for exotic matter. To guarantee the high resolution of the different components a detector control system (DCS) monitoring temperatures, humidity, pressure, and controlling chillers and power supplies is needed. The DCS of PANDA is built using the open-source software package EPICS (Experimental Physics and Industrial Control System) with a PANDA specific version of Control-System Studio. In this document the general concepts of the PANDA DCS will be discussed

  20. 76 FR 54468 - Petra Pet, Inc. (a/k/a Petrapport) v. Panda Logistics Limited; Panda Logistics Co., Ltd. (f/k/a...

    Science.gov (United States)

    2011-09-01

    ... Logistics Limited; Panda Logistics Co., Ltd. (f/k/a panda Int'l Transportation Co., Ltd.); and RDM Solutions... ``Complainant,'' against Respondents Panda Logistics Limited, Panda Logistics Co., Ltd. (f/k/a Panda Int'l... alleges that Respondents Panda Logistics Limited and Panda Logistics Co., Ltd., are each a non-vessel...

  1. Status of gastrointestinal parasites in Red Panda of Nepal.

    Science.gov (United States)

    Bista, Damber; Shrestha, Saroj; Kunwar, Ajaya Jang; Acharya, Sakshi; Jnawali, Shant Raj; Acharya, Krishna Prasad

    2017-01-01

    Red pandas are known to be highly susceptible to endoparasites, which can have a prominent impact on the population dynamics of this endangered species. There are very limited published reports on prevalence and risk of parasites in wild populations of red panda, especially localized reports. This study attempts to provide an in-depth insight of the status of endoparasites in red pandas, which is critical for strengthening conservation efforts. A total of 272 fecal samples were collected through systematic sampling across the red panda distribution range in Nepal and coprological examination was completed using standard techniques. It was followed by an estimation of prevalence and mean intensity of parasites, as well as statistical analysis, which was carried out using R statistical software. Parasite prevalence was documented in 90.80% ( n  = 247) out of 272 samples examined which includes seven different species along with three genera of parasites belonging to Protozoans (3 species), Cestodes (1 genus, 1 species) and Nematodes (2 genera, 3 species). Nematodes predominated in all infected samples (87.62%). Prevalence of Ancyclostoma duodenale ( n  = 227, 70.06%), having a mean intensity of 3.45 ± 2.88 individuals per sample, was observed, followed by Ascaris lumbricoides ( n  = 19, 5.86%) and Entamoeba histolytica ( n  = 24, 7.41%). Eight variables for assessing the determinants of infestation were tested: protected areas; non-protected areas; aspect; elevation; slope; and distance to water sources, herding stations, and settlements. Only the settlement displayed significant association ( β = -1534e-04, t  =  - 2.192, p  = 0.0293) though each parasite species displayed dissimilar association with different variables. This study indicates the urgent need of improving existing herding practice through habitat zonation, rotational grazing, medication of livestock, and prohibition of open defecation within and around red panda habitat.

  2. The PANDA Barrel DIRC detector

    International Nuclear Information System (INIS)

    Hoek, M.; Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Hohler, R.; Kalicy, G.; Kumawat, H.; Lehmann, D.; Lewandowski, B.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwarz, C.; Schwiening, J.; Traxler, M.; Zühlsdorf, M.; Dodokhov, V. Kh.; Britting, A.; Eyrich, W.

    2014-01-01

    The PANDA experiment at the new Facility for Antiproton and Ion Research in Europe (FAIR) at GSI, Darmstadt, will study fundamental questions of hadron physics and QCD using high-intensity cooled antiproton beams with momenta between 1.5 and 15 GeV/c. Efficient Particle Identification for a wide momentum range and the full solid angle is required for reconstructing the various physics channels of the PANDA program. Hadronic Particle Identification in the barrel region of the detector will be provided by a DIRC counter. The design is based on the successful BABAR DIRC with important improvements, such as focusing optics and fast photon timing. Several of these improvements, including different radiator geometries and optics, were tested in particle beams at GSI and at CERN. The evolution of the conceptual design of the PANDA Barrel DIRC and the performance of complex prototypes in test beam campaigns will be discussed

  3. The PANDA Barrel DIRC detector

    Energy Technology Data Exchange (ETDEWEB)

    Hoek, M., E-mail: matthias.hoek@uni-mainz.de [Institut für Kernphysik, Johannes Gutenberg University Mainz, Mainz (Germany); Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Hohler, R.; Kalicy, G.; Kumawat, H.; Lehmann, D.; Lewandowski, B.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwarz, C.; Schwiening, J.; Traxler, M.; Zühlsdorf, M. [GSI Helmholtzzentrum für Schwerionenforschung GmbH, Darmstadt (Germany); Dodokhov, V. Kh. [Joint Institute for Nuclear Research, Dubna (Russian Federation); Britting, A.; Eyrich, W. [Friedrich Alexander-University of Erlangen-Nuremberg, Erlangen (Germany); and others

    2014-12-01

    The PANDA experiment at the new Facility for Antiproton and Ion Research in Europe (FAIR) at GSI, Darmstadt, will study fundamental questions of hadron physics and QCD using high-intensity cooled antiproton beams with momenta between 1.5 and 15 GeV/c. Efficient Particle Identification for a wide momentum range and the full solid angle is required for reconstructing the various physics channels of the PANDA program. Hadronic Particle Identification in the barrel region of the detector will be provided by a DIRC counter. The design is based on the successful BABAR DIRC with important improvements, such as focusing optics and fast photon timing. Several of these improvements, including different radiator geometries and optics, were tested in particle beams at GSI and at CERN. The evolution of the conceptual design of the PANDA Barrel DIRC and the performance of complex prototypes in test beam campaigns will be discussed.

  4. Distribution and habitat use of red panda in the Chitwan-Annapurna Landscape of Nepal.

    Science.gov (United States)

    Bista, Damber; Shrestha, Saroj; Sherpa, Peema; Thapa, Gokarna Jung; Kokh, Manish; Lama, Sonam Tashi; Khanal, Kapil; Thapa, Arjun; Jnawali, Shant Raj

    2017-01-01

    In Nepal, the red panda (Ailurus fulgens) has been sparsely studied, although its range covers a wide area. The present study was carried out in the previously untapped Chitwan-Annapurna Landscape (CHAL) situated in central Nepal with an aim to explore current distributional status and identify key habitat use. Extensive field surveys conducted in 10 red panda range districts were used to estimate species distribution by presence-absence occupancy modeling and to predict distribution by presence-only modeling. The presence of red pandas was recorded in five districts: Rasuwa, Nuwakot, Myagdi, Baglung and Dhading. The predictive distribution model indicated that 1,904.44 km2 of potential red panda habitat is available in CHAL with the protected area covering nearly 41% of the total habitat. The habitat suitability analysis based on the probability of occurrence showed only 16.58% (A = 315.81 km2) of the total potential habitat is highly suitable. Red Panda occupancy was estimated to be around 0.0667, indicating nearly 7% (218 km2) of the total habitat is occupied with an average detection probability of 0.4482±0.377. Based on the habitat use analysis, altogether eight variables including elevation, slope, aspect, proximity to water sources, bamboo abundance, height, cover, and seasonal precipitation were observed to have significant roles in the distribution of red pandas. In addition, 25 tree species were documented from red panda sign plots out of 165 species recorded in the survey area. Most common was Betula utilis followed by Rhododendron spp. and Abies spectabilis. The extirpation of red pandas in previously reported areas indicates a need for immediate action for the long-term conservation of this species in CHAL.

  5. Diversity of macrofungal community in Bifeng Gorge: the core giant ...

    African Journals Online (AJOL)

    Macrofungi not only play an important role in pollution control and other environmental protection measures, but also an important resource in food and pharmaceutical industries. However, the diversity of the macrofungal community in the core habitat of the giant panda in Bifeng Gorge, China is still inadequate. In the ...

  6. Diet and nutrient balance of red panda in Nepal

    Science.gov (United States)

    Panthi, Saroj; Coogan, Sean C. P.; Aryal, Achyut; Raubenheimer, David

    2015-10-01

    We identified the winter plant species consumed by red panda in the Dhorpatan Hunting Reserve of eastern Nepal and compared this to the early-summer diet which was determined previously by Panthi et al. (2012). In addition, we estimated the proximate nutritional content of the leaves identified in red panda diet for both seasons, and we used nutritional geometry to explore macronutrient balance of leaves from the two different sampling periods. We identified six different plants in winter scats, which were the same as found in the previously determined early-summer diet. Arundinaria spp. bamboos were the main species found (82.1 % relative frequency), followed by Acer spp. (6.3 %), Betula utilis (4.6 %), Quercus semicarpifolia (3.7 %), Berberis spp. (1.3 %), and lichens (1.0 %), leaving 2.0 % unidentified. Geometric analysis suggested that the macronutrient balance of seasonal diets were similar in nutrient balance to the most frequently consumed Arundinaria spp. Differences in macronutrient balance may indicate seasonal nutrient preferences, such as increased carbohydrate intake in winter for thermogenesis, and increased protein and lipid intake in early summer to support reproduction and lactation; however, these differences may also indicate differences in resource availability. Habitat conserved for red panda in the region should include sufficient Arundinaria spp. as well as lesser consumed plants which may serve as complimentary foods.

  7. The PANDA experiment at FAIR

    International Nuclear Information System (INIS)

    Bussa, M.P.

    2005-01-01

    The approved FAIR upgrade of the GSI facility in Darmstadt, Germany, includes the construction of a High Energy Storage Ring (HESR) for high intensity, phase space cooled antiprotons with momenta up to 15 GeV/c. A wide physics program is planned at this facility to investigate fundamental questions of hadron and nuclear physics in interactions of antiprotons with nucleons and nuclei. To serve the many experiments planned at this new facility, an universal, modular, hermetic spectrometer called PANDA (Proton ANtiproton Detector Array) is planned. This talk presents an overview of the physics program pursued by this project and of the PANDA detector system. The feasibility of measurements in the sector of spin degrees of freedom of quarks will be also discussed. (author)

  8. The PANDA Endcap Disc DIRC

    Science.gov (United States)

    Föhl, K.; Ali, A.; Belias, A.; Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Kalicy, G.; Krebs, M.; Lehmann, D.; Nerling, F.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwarz, C.; Schwiening, J.; Traxler, M.; Böhm, M.; Eyrich, W.; Lehmann, A.; Pfaffinger, M.; Uhlig, F.; Düren, M.; Etzelmüller, E.; Hayrapetyan, A.; Kreutzfeld, K.; Merle, O.; Rieke, J.; Schmidt, M.; Wasem, T.; Achenbach, P.; Cardinali, M.; Hoek, M.; Lauth, W.; Schlimme, S.; Sfienti, C.; Thiel, M.

    2018-02-01

    Positively identifying charged kaons in the PANDA forward endcap solid angle range can be achieved with the Endcap Disc DIRC, allowing kaon-pion separation from 1 up to 4 GeV/c with a separation power of at least 3 standard deviations. Design, performance, and components of this DIRC are given, including the recently introduced TOFPET-ASIC based read-out. Results of a prototype operated in a test beam at DESY in 2016 are shown.

  9. The ̅PANDA Detector at FAIR

    International Nuclear Information System (INIS)

    Ikegami Andersson, W

    2016-01-01

    The future ̅PANDA detector at FAIR is a state-of-the-art internal target detector designed for strong interaction studies. By utilizing an antiproton beam, a rich and unique physics programme is planned. The ̅PANDA experiment, as well as feasibility studies for hyperon and charmonium physics, are discussed. (paper)

  10. The ̅PANDA Detector at FAIR

    Science.gov (United States)

    Ikegami Andersson, W.; ̅PANDA Collaboration

    2016-11-01

    The future ̅PANDA detector at FAIR is a state-of-the-art internal target detector designed for strong interaction studies. By utilizing an antiproton beam, a rich and unique physics programme is planned. The ̅PANDA experiment, as well as feasibility studies for hyperon and charmonium physics, are discussed.

  11. PandA : pairings and arithmetic

    NARCIS (Netherlands)

    Chuengsatiansup, C.; Naehrig, M.; Ribarski, P.; Schwabe, P.; Cao, Z.; Zhang, F.

    2014-01-01

    This paper introduces PandA, a software framework for Pairings and Arithmetic. It is designed to bring together advances in the efficient computation of cryptographic pairings and the development and implementation of pairing-based protocols. The intention behind the PandA framework is to give

  12. Conservation

    NARCIS (Netherlands)

    Noteboom, H.P.

    1985-01-01

    The IUCN/WWF Plants Conservation Programme 1984 — 1985. World Wildlife Fund chose plants to be the subject of their fund-raising campaign in the period 1984 — 1985. The objectives were to: 1. Use information techniques to achieve the conservation objectives of the Plants Programme – to save plants;

  13. Conservation.

    Science.gov (United States)

    National Audubon Society, New York, NY.

    This set of teaching aids consists of seven Audubon Nature Bulletins, providing the teacher and student with informational reading on various topics in conservation. The bulletins have these titles: Plants as Makers of Soil, Water Pollution Control, The Ground Water Table, Conservation--To Keep This Earth Habitable, Our Threatened Air Supply,…

  14. Defining population structure and genetic signatures of decline in the giant garter snake (Thamnophis gigas): implications for conserving threatened species within highly altered landscapes

    Science.gov (United States)

    Wood, Dustin A.; Halstead, Brian J.; Casazza, Michael L.; Hansen, Eric C.; Wylie, Glenn D.; Vandergast, Amy

    2015-01-01

    Anthropogenic habitat fragmentation can disrupt the ability of species to disperse across landscapes, which can alter the levels and distribution of genetic diversity within populations and negatively impact long-term viability. The giant gartersnake (Thamnophis gigas) is a state and federally threatened species that historically occurred in the wetland habitats of California’s Great Central Valley. Despite the loss of 93 % of historic wetlands throughout the Central Valley, giant gartersnakes continue to persist in relatively small, isolated patches of highly modified agricultural wetlands. Gathering information regarding genetic diversity and effective population size represents an essential component for conservation management programs aimed at this species. Previous mitochondrial sequence studies have revealed historical patterns of differentiation, yet little is known about contemporary population structure and diversity. On the basis of 15 microsatellite loci, we estimate population structure and compare indices of genetic diversity among populations spanning seven drainage basins within the Central Valley. We sought to understand how habitat loss may have affected genetic differentiation, genetic diversity and effective population size, and what these patterns suggest in terms of management and restoration actions. We recovered five genetic clusters that were consistent with regional drainage basins, although three northern basins within the Sacramento Valley formed a single genetic cluster. Our results show that northern drainage basin populations have higher connectivity than among central and southern basins populations, and that greater differentiation exists among the more geographically isolated populations in the central and southern portion of the species’ range. Genetic diversity measures among basins were significantly different, and were generally lower in southern basin populations. Levels of inbreeding and evidence of population

  15. Some aspects of the ecology of the Indian Giant Squirrel Ratufa indica (Erxleben, 1777 in the tropical forests of Mudumalai Wildlife Sanctuary, southern India and their conservation implications

    Directory of Open Access Journals (Sweden)

    N. Baskaran

    2011-07-01

    Full Text Available The Indian Giant Squirrel Ratufa indica, an endemic species to India, is widely distributed from the evergreen to moist and dry deciduous forests of Western and Eastern Ghats and the central Indian hills. We studied its population distribution, activity, feeding, ranging and nesting behaviour across three major habitats in the tropical forests of Mudumalai Wildlife Sanctuary, southern India, during 1998-2000 to manage the species effectively. Extensive survey of the three major habitats—tropical moist, dry deciduous and dry thorn—in the sanctuary shows that its distribution is continuous in moist and dry deciduous forests with good canopy contiguity and patchy along riverine areas in dry thorn and dry deciduous forests with sparse trees and broken canopy. Density estimates using 55 direct sightings from 199 km line transects show a mean of 2.9 (plus or minus 0.313 squirrels/km2. Daylight activity and feeding patterns assessed through 24,098 minutes of focal sampling reveal that animals feed and rest equal amounts of time. The diet constitutes seeds, bark, petioles, leaves and fruits from 25 plants, with Tectona grandis as the principal food source (41%. Its home range size varied from 0.8-1.7 ha with a mean of 1.3ha. Nesting characteristics assessed through 83 nests surveyed along 54km transects showed that the squirrel uses 15 of the 33 tree species found, with higher preference to Schleichera oleosa and Mangifera indica. Nest trees are significantly larger in height, gbh and canopy contiguity than nearest non-nest trees, which are attributed to better protection and escape from predators. Maintenance of diverse natural habitats and reduction in anthropogenic pressure are measures suggested for the conservation of giant squirrel populations in the study area.

  16. Folding behavior of four silks of giant honey bee reflects the evolutionary conservation of aculeate silk proteins.

    Science.gov (United States)

    Maitip, Jakkrawut; Trueman, Holly E; Kaehler, Benjamin D; Huttley, Gavin A; Chantawannakul, Panuwan; Sutherland, Tara D

    2015-04-01

    Multiple gene duplication events in the precursor of the Aculeata (bees, ants, hornets) gave rise to four silk genes. Whilst these homologs encode proteins with similar amino acid composition and coiled coil structure, the retention of all four homologs implies they each are important. In this study we identified, produced and characterized the four silk proteins from Apis dorsata, the giant Asian honeybee. The proteins were readily purified, allowing us to investigate the folding behavior of solutions of individual proteins in comparison to mixtures of all four proteins at concentrations where they assemble into their native coiled coil structure. In contrast to solutions of any one protein type, solutions of a mixture of the four proteins formed coiled coils that were stable against dilution and detergent denaturation. The results are consistent with the formation of a heteromeric coiled coil protein complex. The mechanism of silk protein coiled coil formation and evolution is discussed in light of these results. Copyright © 2015 Elsevier Ltd. All rights reserved.

  17. Open-charm physics opportunities at PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Prencipe, Elisabetta; Cao, Lu; Herten, Andreas; Ritman, James [IKP, Forschungszentrum Juelich (Germany); Kang, Donghee [Johannes Gutenberg Universitaet Mainz (Germany); Pitka, Andreas [Justus-Liebig Universitaet Giessen (Germany); Collaboration: PANDA-Collaboration

    2015-07-01

    Open-charm physics is of high interest for the weak and the strong interactions. New observations in spectroscopy and the recent constraining limits on CP violation in the D sector strongly motivate the study of open-charm physics. The experiment PANDA at FAIR (Darmstadt) will investigate fundamental questions of hadron and nuclear physics in interactions of antiprotons with nucleons and nuclei. Among other topics, original contributions are planned from PANDA in the open-charm sector. With high average reaction rates up to 2.10{sup 7} interactions/s, and a factor 20 higher mass resolution than attained at B-factories, PANDA is in a privileged position to perform measurements of widths of narrow states, such as the D{sub s}(2317){sup +} and the D{sub s}(2460){sup +}, and form factors in semileptonic D{sub s} decays. Very rare processes (e.g. D{sup 0} → γγ) can be accessible with unprecedented accuracy. In addition, the search for new physics is a challenge that PANDA can take, for example with the study of the mixing in the D sector, analyzing the channel anti pp → ψ(3770) → anti D{sup 0}D{sup 0}. PANDA is expected to be decisive to answer on these and second-order open questions. A general overview of the benchmark channels in the D sector with PANDA is given in this report, showing the results of recent PandaRoot simulations.

  18. TEPSS related PANDA tests (ESBWR)

    International Nuclear Information System (INIS)

    Huggenberger, M.; Aubert, C.; Bandurski, T.; Dreier, J.; Fischer, O.; Strassberger, H.J.; Yadigaroglu, G.

    2000-01-01

    A number of test series to investigate passive safety systems for the next generation of Light Water Reactors have been performed in the PANDA facility at the Paul Scherrer Institute (PSI). The large scale thermalhydraulic test facility allows to investigate Passive Containment Cooling Systems (PCCS) and the long-term containment behaviour after a Loss of Coolant Accident (LOCA). After successful completion of the ALPHA phase-I test series, where the PCCS performance of the Simplified Boiling Water Reactor (SBWR) was examined, phase-II was initiated in 1996 with new projects, all with international participation (EC Fourth Framework Programme on Nuclear Fission Safety). One of these projects is entitled 'Technology Enhancement for Passive Safety Systems' (TEPSS). TEPSS is focused on the European Simplified Boiling Water Reactor (ESBWR). Several new containment features and PCCS long-term response under different LOCA scenarios were investigated in PANDA. The PCCS start-up was demonstrated under challenging conditions. The effect of nitrogen hidden somewhere in the drywell and released later in the transient was simulated by injecting air for a certain period into the drywell. The effect of light gases on the PCCS performance was investigated by helium injection to the drywell. Finally, the influence of low PCC pool levels on PCCS and containment performance was examined. The main findings were that the PCCS works as intended and shows generally a favourable and robust long-term post LOCA behaviour. The system starts working even under extreme conditions and trapped air released from the drywell later in the transient does only temporarily reduce the PCCS performance. The new PANDA test series provided an extensive data base which will contribute to further improve containment design of passive plants and allow for system code assessment in a wide parameter range. (author)

  19. Repeatable Reverse Engineering with PANDA

    Science.gov (United States)

    2015-12-08

    necessary layout information for the Android 2.3 and 4.2 SDK kernels. See Section IV-C for an example of the kind of deep reverse engineering of Android apps ...code re-use and simplifying complex analysis development. We demonstrate PANDA’s effectiveness via a number of use cases, including enabling an old but...continue to function. 2) Identify critical vulnerabilities . 3) Understand the true purpose and actions of code. It is common for legacy code to stop

  20. XYZ rates with PANDA at FAIR

    Energy Technology Data Exchange (ETDEWEB)

    Prencipe, Elisabetta [Forschungszentrum Juelich IKP1, Juelich (Germany); Lange, Jens Soeren [Justus-Liebig-Universitaet Giessen, Giessen (Germany); Collaboration: PANDA-Collaboration

    2016-07-01

    Narrow states have been recently observed, which do not fit into the predictions of static quark anti-quark potential, and thus they are often regarded as exotic states. The PANDA experiment at FAIR aims, among other topics of interest, to investigate XYZ states in the charmonium mass region in antiproton-proton collisions, with a very high rate (≤ 10{sup 7} interactions per second), leading to a copious and statistically significant production of theses states with up to 10{sup 4} per day, already on the first day of data taking with an average luminosity of L = 10{sup 31} cm{sup -2}s{sup -1}. We present results from a complete MC simulation, and estimates on cross sections of the X(3872), the Y(4260) and the charged Z(3900). In particular new, yet unobserved states will be explained, for which the production in e{sup +}e{sup -} collisions, radiative decays or B meson decays is forbidden, e.g. by parity conservation, and production in anti pp collisions represents a unique possibility.

  1. The PANDA detector at FAIR

    International Nuclear Information System (INIS)

    Bersani, Andrea

    2012-01-01

    The PANDA detector will be installed at FAIR to enterprise a long-term, wide-spectrum physics program in the strong interaction framework. The detector will be installed at the HESR accumulation ring, which will provide an anti-proton beam of unprecedented luminosity and momentum definition. The beam will interact with an internal target. The detector has been designed to allow a 4π coverage around the interaction region. Due to the relatively high energy of the beam, up to 15 GeV, PANDA will feature two magnetic spectrometers: the target spectrometer (TS), with a superconducting solenoid and covering the interaction region, and a forward spectrometer (FS), with a normal-conducting dipole and covering the small angles region. Since the physics program is wide and the requirements on the various subsystems are different, the detector has been designed to be as flexible as possible. The complete detector will be described in detail, both from the viewpoint of the proposed techniques and from the viewpoint of the expected performances. An overview of the status of various components of the detector will be presented, too.

  2. The PANDA detector at FAIR

    Science.gov (United States)

    Bersani, Andrea

    2012-10-01

    The PANDA detector will be installed at FAIR to enterprise a long-term, wide-spectrum physics program in the strong interaction framework. The detector will be installed at the HESR accumulation ring, which will provide an anti-proton beam of unprecedented luminosity and momentum definition. The beam will interact with an internal target. The detector has been designed to allow a 4π coverage around the interaction region. Due to the relatively high energy of the beam, up to 15 GeV, PANDA will feature two magnetic spectrometers: the target spectrometer (TS), with a superconducting solenoid and covering the interaction region, and a forward spectrometer (FS), with a normal-conducting dipole and covering the small angles region. Since the physics program is wide and the requirements on the various subsystems are different, the detector has been designed to be as flexible as possible. The complete detector will be described in detail, both from the viewpoint of the proposed techniques and from the viewpoint of the expected performances. An overview of the status of various components of the detector will be presented, too.

  3. The Panda Strip Asic: Pasta

    Science.gov (United States)

    Lai, A.

    2018-01-01

    PASTA is the 64 channel front-end chip, designed in a 110 nm CMOS technology to read out the strip sensors of the Micro Vertex Detector (MVD) of the PANDA experiment. This chip provides high resolution timestamp and deposited charge information by means of the time-over-threshold technique. Its working principle is based on a predecessor, the TOFPET ASIC, that was designed for medical applications. A general restructuring of the architecture was needed, in order to meet the specific requirements imposed by the physics programme of PANDA, especially in terms of radiation tolerance, spatial constraints, and readout in absence of a first level hardware trigger. The first revision of PASTA is currently under evaluation at the Forschungszentrum Jülich, where a data acquisition system dedicated to the MVD prototypes has been developed. This paper describes the main aspect of the chip design, gives an overview of the data acquisition system used for the verification, and shows the first results regarding the performance of PASTA.

  4. Prototyping the PANDA Barrel DIRC

    Energy Technology Data Exchange (ETDEWEB)

    Schwarz, C., E-mail: C.Schwarz@gsi.de [GSI Helmholtzzentrum für Schwerionenforschung GmbH, Darmstadt (Germany); Kalicy, G.; Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Hohler, R.; Kumawat, H.; Lehmann, D.; Lewandowski, B.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwiening, J.; Traxler, M.; Zühlsdorf, M. [GSI Helmholtzzentrum für Schwerionenforschung GmbH, Darmstadt (Germany); Dodokhov, V.Kh. [Joint Institute for Nuclear Research, Dubna (Russian Federation); Britting, A.; Eyrich, W.; Lehmann, A. [Friedrich Alexander-University of Erlangen-Nuremberg, Erlangen (Germany); and others

    2014-12-01

    The design of the Barrel DIRC detector for the future PANDA experiment at FAIR contains several important improvements compared to the successful BABAR DIRC, such as focusing and fast timing. To test those improvements as well as other design options a prototype was build and successfully tested in 2012 with particle beams at CERN. The prototype comprises a radiator bar, focusing lens, mirror, and a prism shaped expansion volume made of synthetic fused silica. An array of micro-channel plate photomultiplier tubes measures the location and arrival time of the Cherenkov photons with sub-nanosecond resolution. The development of a fast reconstruction algorithm allowed to tune construction details of the detector setup with test beam data and Monte-Carlo simulations.

  5. Genetic composition of captive panda population.

    Science.gov (United States)

    Yang, Jiandong; Shen, Fujun; Hou, Rong; Da, Yang

    2016-10-03

    A major function of the captive panda population is to preserve the genetic diversity of wild panda populations in their natural habitats. Understanding the genetic composition of the captive panda population in terms of genetic contributions from the wild panda populations provides necessary knowledge for breeding plans to preserve the genetic diversity of the wild panda populations. The genetic contributions from different wild populations to the captive panda population were highly unbalanced, with Qionglai accounting for 52.2 % of the captive panda gene pool, followed by Minshan with 21.5 %, Qinling with 10.6 %, Liangshan with 8.2 %, and Xiaoxiangling with 3.6 %, whereas Daxiangling, which had similar population size as Xiaoxiangling, had no genetic representation in the captive population. The current breeding recommendations may increase the contribution of some small wild populations at the expense of decreasing the contributions of other small wild populations, i.e., increasing the Xiaoxiangling contribution while decreasing the contribution of Liangshan, or sharply increasing the Qinling contribution while decreasing the contributions of Xiaoxiangling and Liangshan, which were two of the three smallest wild populations and were already severely under-represented in the captive population. We developed three habitat-controlled breeding plans that could increase the genetic contributions from the smallest wild populations to 6.7-11.2 % for Xiaoxiangling, 11.5-12.3 % for Liangshan and 12.9-20.0 % for Qinling among the offspring of one breeding season while reducing the risk of hidden inbreeding due to related founders from the same habitat undetectable by pedigree data. The three smallest wild panda populations of Daxiangling, Xiaoxiangling and Liangshan either had no representation or were severely unrepresented in the current captive panda population. By incorporating the breeding goal of increasing the genetic contributions from the smallest wild

  6. Linkage of reproductive sciences: from 'quick fix' to 'integrated' conservation.

    Science.gov (United States)

    Wildt, D E; Ellis, S; Howard, J G

    2001-01-01

    Our laboratory has experienced four phases in understanding how the reproductive sciences contribute to genuine conservation of biodiversity. The first is the 'quick fix phase' in which the erroneous assumption is made that extant knowledge and techniques are readily adaptable to an unstudied wild animal to produce offspring rapidly. The second is the 'species-specificity phase' in which it is recognized that every species has evolved unique reproductive mechanisms that must be mastered before propagation can be enhanced. The third is the 'applicability phase' in which one grasps that all the new knowledge and technology are of minimal relevance without the cooperation of wildlife managers. The final phase is 'integration', the realization that reproduction is only one component in an abundantly complex conservation puzzle that requires interweaving many scientific disciplines with elaborate biopolitical, economic and habitat variables. These phases are illustrated using 20 years of experience with wildlife species, including the cheetah, black-footed ferret and giant panda. We conclude that the foremost value of the reproductive sciences for conserving endangered species is the discipline's powerful laboratory tools for understanding species-specific reproductive mechanisms. Such scholarly information, when applied holistically, can be used to improve management by natural or, occasionally, assisted breeding. Genuine conservation is achieved only when the reproductive knowledge and technologies are integrated into multidisciplinary programmes that preserve species integrity ex situ and preferably in situ.

  7. Thoracic limb morphology of the red panda (Ailurus fulgens) evidenced by osteology and radiography.

    Science.gov (United States)

    Makungu, Modesta; Groenewald, Hermanus B; du Plessis, Wencke M; Barrows, Michelle; Koeppel, Katja N

    2015-07-15

    The red panda (Ailurus fulgens) is distributed primarily in the Himalayas and southern China. It is classified as a vulnerable species by the International Union for Conservation of Nature. The aim of this study was to describe the normal osteology and radiographic anatomy of the thoracic limb of the red panda. Radiography of the right thoracic limb was performed in seven captive adult red pandas. Radiographic findings were correlated with bone specimens from three adult animals. The scapula was wide craniocaudally and presented with a large area for the origin of the teres major muscle. The square-shaped major tubercle did not extend proximal to the head of the humerus. The medial epicondyle was prominent. A supracondylar foramen was present. The radial tuberosity and sesamoid bone for the abductor digiti I longus were prominent. The accessory carpal bone was directed palmarolaterally. Metacarpal bones were widely spread. The thoracic limb morphology of the red panda evidenced by osteology and radiography indicated flexibility of the thoracic limb joints and well-developed flexor and supinator muscles, which are important in arboreal quadrupedal locomotion. Knowledge gained during this study may prove useful in identifying skeletal material or remains and diagnosing musculoskeletal diseases and injuries of the thoracic limb.

  8. Thoracic limb morphology of the red panda (Ailurus fulgens evidenced by osteology and radiography

    Directory of Open Access Journals (Sweden)

    Modesta Makungu

    2015-07-01

    Full Text Available The red panda (Ailurus fulgens is distributed primarily in the Himalayas and southern China. It is classified as a vulnerable species by the International Union for Conservation of Nature. The aim of this study was to describe the normal osteology and radiographic anatomy of the thoracic limb of the red panda. Radiography of the right thoracic limb was performed in seven captive adult red pandas. Radiographic findings were correlated with bone specimens from three adult animals. The scapula was wide craniocaudally and presented with a large area for the origin of the teres major muscle. The square-shaped major tubercle did not extend proximal to the head of the humerus. The medial epicondyle was prominent. A supracondylar foramen was present. The radial tuberosity and sesamoid bone for the abductor digiti I longus were prominent. The accessory carpal bone was directed palmarolaterally. Metacarpal bones were widely spread. The thoracic limb morphology of the red panda evidenced by osteology and radiography indicated flexibility of the thoracic limb joints and well-developed flexor and supinator muscles, which are important in arboreal quadrupedal locomotion. Knowledge gained during this study may prove useful in identifying skeletal material or remains and diagnosing musculoskeletal diseases and injuries of the thoracic limb.

  9. Large anthropogenic impacts on a charismatic small carnivore: Insights from distribution surveys of red panda Ailurus fulgens in Nepal.

    Science.gov (United States)

    Panthi, Saroj; Khanal, Gopal; Acharya, Krishna Prasad; Aryal, Achyut; Srivathsa, Arjun

    2017-01-01

    Protected areas are key to preserving biodiversity and maintaining ecosystem services. However, their ability to ensure long-term survival of threatened andendangered species varies across countries, regions and landscapes. Distribution surveys can beparticularly important for assessing the value of protected areas, and gauging their efficacy incatering to species-specific requirements. We assessed the conservation value of one such reserve for a charismatic yet globally endangered species, the red panda Ailurus fulgens,in the light of on-going land-use transformation in Nepal. We conducted field surveys forindirect signs of red pandas along forest trails in 25-km2 sampling grid cells (n = 54) of Dhorpatan Hunting Reserve, and confronted a set of ecological hypotheses to the data using hierarchical occupancy models. We estimated overall occupancy at Ψ(SE) = 0.41 (0.007), with relatively high site-level detectability [p = 0.93 (SE = 0.001)]. Our results show that despitebeing a subsistence form of small-scale resource use, extraction of bamboo and livestock grazing negatively affected panda occurrence, albeit at different intensities. The amount of bamboo cover,rather than the overall proportion of forest cover, had greater influence on the panda occurrence. Despite availability of bamboo cover, areas with bamboo extraction and anthropogenic disturbances were less likely to be occupied by pandas. Together, these results suggest that long-term persistence of red pandas in this reserve and elsewhere across the species' range will require preventing commercial extractionof bamboo, coupled with case-specific regulation of anthropogenic exploitation of red panda habitats.

  10. Optical properties of the PANDA barrel DIRC radiator bars

    Energy Technology Data Exchange (ETDEWEB)

    Kalicy, Grzegorz; Krebs, Marvin; Peters, Klaus [GSI, Darmstadt (Germany); Goethe Universitaet, Frankfurt (Germany); Schwarz, Carsten; Schwiening, Jochen [GSI, Darmstadt (Germany); Collaboration: PANDA-Collaboration

    2015-07-01

    The PANDA experiment at the Facility for Antiproton and Ion Research in Europe (FAIR) at GSI, Darmstadt, will study fundamental questions of hadron physics and QCD. A fast focusing DIRC (Detection of Internally Reflected Cherenkov light) counter will provide hadronic particle identification (PID) in the barrel region of the PANDA detector. To meet the PID requirements, the Barrel DIRC has to provide precise measurements of the Cherenkov angle, which is conserved for Cherenkov photons propagating through the radiator by total internal reflection. The radiators, rectangular bars made from fused silica, have to fulfill very strict optical and mechanical requirements. This includes the squareness and parallelism of the sides of the bars, sharp corners, and a very smooth surface polish, ensuring that the Cherenkov photons reach the optical sensors without angular distortions. Currently the Barrel DIRC is at the final design stage and several different bar shapes and fabrication methods are being considered for the final detector. An optical setup, consisting of a computer-controlled positioning and a multi-wavelength laser system, is used to evaluate the radiator bars to obtain critical values like transmittance and reflectivity. The current results and techniques are presented on this poster.

  11. Giant grains

    International Nuclear Information System (INIS)

    Leitch-Devlin, M.A.; Millar, T.J.; Williams, D.A.

    1976-01-01

    Infrared observations of the Orion nebula have been interpreted by Rowan-Robinson (1975) to imply the existence of 'giant' grains, radius approximately 10 -2 cm, throughout a volume about a parsec in diameter. Although Rowan-Robinson's model of the nebula has been criticized and the presence of such grains in Orion is disputed, the proposition is accepted, that they exist, and in this paper situations in which giant grains could arise are examined. It is found that, while a giant-grain component to the interstellar grain density may exist, it is difficult to understand how giant grains arise to the extent apparently required by the Orion nebula model. (Auth.)

  12. The PANDA facility and first test results

    International Nuclear Information System (INIS)

    Dreier, J.; Huggenberger, M.; Aubert, C.; Bandurski, T.; Fischer, O.; Healzer, J.; Lomperski, S.; Strassberger, H.J.; Varadi, G.; Yadigaroglu, G.

    1996-01-01

    The PANDA test facility at the Paul Scherrer Institute is used to study the long-term performance of the Simplified Boiling Water Reactor's passive containment cooling system. The PANDA tests demonstrate performance on a larger scale than previous tests and examine the effects of any non-uniform spatial distributions of steam and non-condensable gases in the system. The facility is in 1:1 vertical scale and 1:25 scale for volume, power etc. Extensive facility characterization tests and steady-state passive containment condenser performance tests are presented. The results of the base case test of a series of transient system behaviour tests are reviewed. The first PANDA tests exhibited reproducibility, and indicated that the Simplified Boiling Water Reactor's containment is likely to be favorably responsive and highly robust to changes in the thermal transport patterns. (orig.) [de

  13. ASTEC validation on PANDA SETH

    International Nuclear Information System (INIS)

    Bentaib, Ahmed; Bleyer, Alexandre; Schwarz, Siegfried

    2009-01-01

    The ASTEC code development by IRSN and GRS is aimed to provide an integral code for the simulation of the whole course of severe accidents in Light-Water Reactors. ASTEC is a complex system of codes for reactor safety assessment. In this validation, only the thermal-hydraulic module of ASTEC code is used. ASTEC is a lumped-parameter code able to represent multi-compartment containments. It uses the following main elements: zones (compartments), junctions (liquids and atmospherics) and structures. The zones are connected by junctions and contain steam, water and non condensable gases. They exchange heat with structures by different heat transfer regimes: convection, radiation and condensation. This paper presents the validation of ASTEC V1.3 on the tests T9 and T9bis, of the PANDA OECD/SETH experimental program, investigating the impact of injection velocity and steam condensation on the plume shape and on the gas distribution. Dedicated meshes were developed to simulate the test facility with the two vessels DW1, DW2 and the interconnection pipe. The obtained numerical results are analyzed and compared to the experiments. The comparison shows a good agreement between experiments and calculations. (author)

  14. ASTEC validation on PANDA SETH

    International Nuclear Information System (INIS)

    Bentaib, A.; Bleyer, A.

    2011-01-01

    The ASTEC code (jointly developed by IRSN and GRS, i.e. Gesellschaft fur Anlagen- und Reaktorsicherheit mbH) development is aimed to provide an integral code for the simulation of the whole course of severe accidents in Light-Water Reactors. ASTEC is a complex system of codes for reactor safety assessment. In this benchmark, only the CPA (Containment Part of ASTEC) module is used. CPA is a lumped-parameter able to represent a multi-compartments containment. It used the following main elements: zones (compartments), junctions (liquids and atmospherics) and structures. The zones are connected by junctions and contain steam, water and non condensable gases. They exchange heat with structures by different heat transfer regimes: convection, radiation and condensation. In this paper, three selected from the PANDA SETH Benchmark 9, 9bis and 25 are considered to investigate the impact of injection velocity and steam condensation on the plume shape and on gas distribution. Coarse and fine meshes were developed by considering the test facility with the two vessels DW1, DW2, and the interconnection pipe. The obtained numerical results are analyzed and compared to the experiments. The comparison shows the good agreement between experiments and calculations. (author)

  15. Strong Interaction Studies with PANDA at FAIR

    Science.gov (United States)

    Schönning, Karin

    2016-10-01

    The Facility for Antiproton and Ion Research (FAIR) in Darmstadt, Germany, provides unique possibilities for a new generation of nuclear-, hadron- and atomic physics experiments. The future PANDA experiment at FAIR will offer a broad physics programme with emphasis on different aspects of hadron physics. Understanding the strong interaction in the perturbative regime remains one of the greatest challenges in contemporary physics and hadrons provide several important keys. In these proceedings, PANDA will be presented along with some high-lights of the planned physics programme.

  16. Strong Interaction Studies with PANDA at FAIR

    International Nuclear Information System (INIS)

    Schönning, Karin

    2016-01-01

    The Facility for Antiproton and Ion Research (FAIR) in Darmstadt, Germany, provides unique possibilities for a new generation of nuclear-, hadron- and atomic physics experiments. The future PANDA experiment at FAIR will offer a broad physics programme with emphasis on different aspects of hadron physics. Understanding the strong interaction in the perturbative regime remains one of the greatest challenges in contemporary physics and hadrons provide several important keys. In these proceedings, PANDA will be presented along with some high-lights of the planned physics programme

  17. Mesons, PANDA and the scalar glueball

    International Nuclear Information System (INIS)

    Parganlija, Denis

    2014-01-01

    The non-perturbative nature of Quantum Chromodynamics (QCD) at low energies has prompted the expectation that the gauge-bosons of QCD – gluons – might give rise to compound objects denoted as glueballs. Experimental signals for glueballs have represented a matter of research for various collaborations in the last decades; future research in this direction is a main endeavour planned by the PANDA Collaboration at FAIR. Hence in this article I review some of the outstanding issues in the glueball search, particularly with regard to the ground state – the scalar glueball, and discuss the relevance for PANDA at FAIR.

  18. Movement-based estimation and visualization of space use in 3D for wildlife ecology and conservation.

    Directory of Open Access Journals (Sweden)

    Jeff A Tracey

    Full Text Available Advances in digital biotelemetry technologies are enabling the collection of bigger and more accurate data on the movements of free-ranging wildlife in space and time. Although many biotelemetry devices record 3D location data with x, y, and z coordinates from tracked animals, the third z coordinate is typically not integrated into studies of animal spatial use. Disregarding the vertical component may seriously limit understanding of animal habitat use and niche separation. We present novel movement-based kernel density estimators and computer visualization tools for generating and exploring 3D home ranges based on location data. We use case studies of three wildlife species--giant panda, dugong, and California condor--to demonstrate the ecological insights and conservation management benefits provided by 3D home range estimation and visualization for terrestrial, aquatic, and avian wildlife research.

  19. Movement-based estimation and visualization of space use in 3D for wildlife ecology and conservation

    Science.gov (United States)

    Tracey, Jeff A.; Sheppard, James; Zhu, Jun; Wei, Fu-Wen; Swaisgood, Ronald R.; Fisher, Robert N.

    2014-01-01

    Advances in digital biotelemetry technologies are enabling the collection of bigger and more accurate data on the movements of free-ranging wildlife in space and time. Although many biotelemetry devices record 3D location data with x, y, and z coordinates from tracked animals, the third z coordinate is typically not integrated into studies of animal spatial use. Disregarding the vertical component may seriously limit understanding of animal habitat use and niche separation. We present novel movement-based kernel density estimators and computer visualization tools for generating and exploring 3D home ranges based on location data. We use case studies of three wildlife species – giant panda, dugong, and California condor – to demonstrate the ecological insights and conservation management benefits provided by 3D home range estimation and visualization for terrestrial, aquatic, and avian wildlife research.

  20. Movement-based estimation and visualization of space use in 3D for wildlife ecology and conservation.

    Science.gov (United States)

    Tracey, Jeff A; Sheppard, James; Zhu, Jun; Wei, Fuwen; Swaisgood, Ronald R; Fisher, Robert N

    2014-01-01

    Advances in digital biotelemetry technologies are enabling the collection of bigger and more accurate data on the movements of free-ranging wildlife in space and time. Although many biotelemetry devices record 3D location data with x, y, and z coordinates from tracked animals, the third z coordinate is typically not integrated into studies of animal spatial use. Disregarding the vertical component may seriously limit understanding of animal habitat use and niche separation. We present novel movement-based kernel density estimators and computer visualization tools for generating and exploring 3D home ranges based on location data. We use case studies of three wildlife species--giant panda, dugong, and California condor--to demonstrate the ecological insights and conservation management benefits provided by 3D home range estimation and visualization for terrestrial, aquatic, and avian wildlife research.

  1. Non-invasive monitoring of reproductive and stress hormones in the endangered red panda (Ailurus fulgens fulgens).

    Science.gov (United States)

    Beaulah Budithi, Neema Raja; Kumar, Vinod; Yalla, Suneel Kumar; Rai, Upashna; Umapathy, Govindhaswamy

    2016-09-01

    The red panda (Ailurus fulgens fulgens) is classified as endangered due to its declining population, habitat fragmentation and poaching. Efforts are being made to breed them in captivity as part of nationwide conservation breeding program. This study aimed to standardize Enzyme immunoassays (EIAs) to monitor reproductive (Progesterone metabolite, Testosterone) and stress hormone (Cortisol) in red panda. For this purpose, we collected 1471 faecal samples from four females and one male over a period of one year from Padmaja Naidu Himalayan Zoological Park, Darjeeling, India. HPLC confirmed the presence of immunoreactive 5α-pregnan-3α-ol-20-one, testosterone and cortisol metabolites in faecal samples. Using 5α-pregnan-3α-ol-20-one EIA, we were able to monitor reproduction and detect pregnancy in one of the females, which successfully conceived and delivered during the study period. We were also able to monitor testosterone and cortisol in faecal samples of the red panda. Faecal testosterone levels were found in higher concentration in breeding season than in non-breeding season. Faecal cortisol concentrations showed a negative relationship with ambient temperature and peaked during winter months in all animals. Standardization of EIAs and faecal hormone monitoring would facilitate red panda conservation breeding programs in India and elsewhere. Copyright © 2016 Elsevier B.V. All rights reserved.

  2. PANDA : Strong Interaction Studies with Antiprotons

    NARCIS (Netherlands)

    Peters, Klaus; Schmitt, Lars; Stockmanns, Tobias; Messchendorp, Johan

    2017-01-01

    The Antiproton Anihilation in Darmstadt (PANDA) collaboration at the Facility for Antiproton and Ion Research (FAIR) is a cooperation of more than 400 scientists from 19 countries. FAIR will be an accelerator facility leading the European research in nuclear and hadron physics in the coming decade.

  3. Online and Offline Pattern Recognition in PANDA

    Science.gov (United States)

    Boca, Gianluigi

    2016-11-01

    PANDA is one of the four experiments that will run at the new facility FAIR that is being built in Darmstadt, Germany. It is a fixed target experiment: a beam of antiprotons collides on a jet proton target (the maximum center of mass energy is 5.46 GeV). The interaction rate at the startup will be 2MHz with the goal of reaching 20MHz at full luminosity. The beam of antiprotons will be essentially continuous. PANDA will have NO hardware trigger but only a software trigger, to allow for maximum flexibility in the physics program. All those characteristics are severe challenges for the reconstruction code that 1) must be fast, since it has to be validated up to 20MHz interaction rate; 2) must be able to reject fake tracks caused by the remnant hits, belonging to previous or later events in some slow detectors, for example the straw tubes in the central region. The Pattern Recognition (PR) of PANDA will have to run both online to achieve a first fast selection, and offline, at lower rate, for a more refined selection. In PANDA the PR code is continuously evolving; this contribution shows the present status. I will give an overview of three examples of PR following different strategies and/or implemented on different hardware (FPGA, GPUs, CPUs) and, when available, I will report the performances.

  4. Online and Offline Pattern Recognition in PANDA

    Directory of Open Access Journals (Sweden)

    Boca Gianluigi

    2016-01-01

    Full Text Available PANDA is one of the four experiments that will run at the new facility FAIR that is being built in Darmstadt, Germany. It is a fixed target experiment: a beam of antiprotons collides on a jet proton target (the maximum center of mass energy is 5.46 GeV. The interaction rate at the startup will be 2MHz with the goal of reaching 20MHz at full luminosity. The beam of antiprotons will be essentially continuous. PANDA will have NO hardware trigger but only a software trigger, to allow for maximum flexibility in the physics program. All those characteristics are severe challenges for the reconstruction code that 1 must be fast, since it has to be validated up to 20MHz interaction rate; 2 must be able to reject fake tracks caused by the remnant hits, belonging to previous or later events in some slow detectors, for example the straw tubes in the central region. The Pattern Recognition (PR of PANDA will have to run both online to achieve a first fast selection, and offline, at lower rate, for a more refined selection. In PANDA the PR code is continuously evolving; this contribution shows the present status. I will give an overview of three examples of PR following different strategies and/or implemented on different hardware (FPGA, GPUs, CPUs and, when available, I will report the performances.

  5. Tics, OCD and Streptococcal Infection (PANDAS

    Directory of Open Access Journals (Sweden)

    J Gordon Millichap

    2008-07-01

    Full Text Available Forty matched pediatric autoimmune neuropsychiatric disorders associated with streptococcal infections (PANDAS case-control pairs were prospectively evaluated clinically and with testing for group A b-hemolytic streptococcus for an average of 2 years, in a study at University of Rochester School of Medicine, New York; and WHO Streptococcal Reference Laboratory, Minneapolis, MN.

  6. Amdoparvovirus Infection in Red Pandas ( Ailurus fulgens).

    Science.gov (United States)

    Alex, Charles E; Kubiski, Steven V; Li, Linlin; Sadeghi, Mohammadreza; Wack, Raymund F; McCarthy, Megan A; Pesavento, Joseph B; Delwart, Eric; Pesavento, Patricia A

    2018-01-01

    Aleutian mink disease virus is the type species in the genus Amdoparvovirus, and in mink and other Mustelidae can cause either subclinical disease or fatal chronic immune stimulation and immune complex disease. The authors describe a novel amdoparvovirus in the endangered red panda ( Ailurus fulgens), discovered using viral metagenomics. The authors analyzed the prevalence, tissue distribution, and disease association by PCR, in situ hybridization, electron microscopy, and histology in a group of 6 red pandas from a single zoological collection. The study incorporates a fecal shedding survey and analysis of tissues from 4 necropsied animals over a 12-year span. The tentatively named red panda amdoparvovirus (RpAPV) was detected in the feces and/or tissues of all animals tested. At necropsy of 1 geriatric animal, infection was associated with pyogranulomatous peritonitis, pancreatitis, and myocarditis. Other animals had detectable low-level viral nucleic acid in lymph nodes and both oral and intestinal epithelium at the time of necropsy. Full-length genome sequences of RpAPV strains from 2 animals had 12% sequence divergence, demonstrating genetic diversity even among in-contact animals. RpAPV is a persistent infection in this cohort of red pandas, and has variable clinical expression.

  7. A PanDA backend for the ganga analysis interface

    International Nuclear Information System (INIS)

    Vanderster, D C; Elmsheuser, J; Walker, R; Liko, D; Maeno, T; Wenaus, T; Nilsson, P

    2010-01-01

    Ganga provides a uniform interface for running ATLAS user analyses on a number of local, batch, and grid backends. PanDA is a pilot-based production and distributed analysis system developed and used extensively by ATLAS. This work presents the implementation and usage experiences of a PanDA backend for Ganga. Built upon reusable application libraries from GangaAtlas and PanDA, the Ganga PanDA backend allows users to run their analyses on the worldwide PanDA resources, while providing the ability for users to develop simple or complex analysis workflows in Ganga. Further, the backend allows users to submit and manage 'personal' PanDA pilots: these pilots run under the user's grid certificate and provide a secure alternative to shared pilot certificates while enabling the usage of local resource allocations.

  8. Gastric dilatation and volvulus in a red panda (Ailurus fulgens).

    Science.gov (United States)

    Neilsen, Colleen; Mans, Christoph; Colopy, Sara A

    2014-11-01

    To describe the successful management of gastric dilatation and volvulus (GDV) in a red panda. Clinical report. Red panda diagnosed with GDV. A 12-year-old male red panda (Ailurus fulgens) was evaluated for acute onset inappetence, staggering, collapse, and tachypnea. Gastric dilatation and volvulus (GDV) was diagnosed by radiography, abdominal ultrasonography, and exploratory celiotomy. Torsion of the stomach was corrected and an incisional gastropexy performed to prevent recurrence. No organs were devitalized, no other abnormalities detected, and the red panda recovered fully within 72 hours. GDV should be considered as a differential diagnosis for red pandas presenting with acute onset of unspecific signs such as collapse, inappetence, and abdominal distension. GDV in red pandas can be diagnosed and successfully treated as described in dogs. © Copyright 2014 by The American College of Veterinary Surgeons.

  9. Allometry indicates giant eyes of giant squid are not exceptional.

    Science.gov (United States)

    Schmitz, Lars; Motani, Ryosuke; Oufiero, Christopher E; Martin, Christopher H; McGee, Matthew D; Gamarra, Ashlee R; Lee, Johanna J; Wainwright, Peter C

    2013-02-18

    The eyes of giant and colossal squid are among the largest eyes in the history of life. It was recently proposed that sperm whale predation is the main driver of eye size evolution in giant squid, on the basis of an optical model that suggested optimal performance in detecting large luminous visual targets such as whales in the deep sea. However, it is poorly understood how the eye size of giant and colossal squid compares to that of other aquatic organisms when scaling effects are considered. We performed a large-scale comparative study that included 87 squid species and 237 species of acanthomorph fish. While squid have larger eyes than most acanthomorphs, a comparison of relative eye size among squid suggests that giant and colossal squid do not have unusually large eyes. After revising constants used in a previous model we found that large eyes perform equally well in detecting point targets and large luminous targets in the deep sea. The eyes of giant and colossal squid do not appear exceptionally large when allometric effects are considered. It is probable that the giant eyes of giant squid result from a phylogenetically conserved developmental pattern manifested in very large animals. Whatever the cause of large eyes, they appear to have several advantages for vision in the reduced light of the deep mesopelagic zone.

  10. A review of the biology and conservation of the Cope's giant salamander Dicamptodon copei Nussbaum, 1970 (Amphibia: Caudata: Dicamptodontidae) in the Pacific northwestern region of the USA

    Science.gov (United States)

    Alex D. Foster; Deanna H. Olson; Lawrence L.C. Jones

    2015-01-01

    The Cope’s Giant Salamander Dicamptodon copei is a stream dwelling amphibian reliant on cool streams, native to forested areas primarily west of the crest of the Cascade Range in the Pacific Northwest region, USA. Unlike other members of the genus, adult D. copei are most often found in a paedomorphic form, and rarely transforms to a terrestrial stage. As a result,...

  11. A PandaRoot interface for binary data in the PANDA prototype DAQ system

    Energy Technology Data Exchange (ETDEWEB)

    Fleischer, Soeren; Lange, Soeren; Kuehn, Wolfgang; Hahn, Christopher; Wagner, Milan [2. Physikalisches Institut, Uni Giessen (Germany); Collaboration: PANDA-Collaboration

    2015-07-01

    The PANDA experiment at FAIR will feature a raw data rate of more than 20 MHz. Only a small fraction of these events are of interest. Consequently, a sophisticated online data reduction setup is required, lowering the final output data rate by a factor of roughly 10{sup 3} by discarding data which does not fulfil certain criteria. The first stages of the data reduction will be implemented using FPGA-based Compute Nodes. For the planned tests with prototype detectors a small but scalable system is being set up which will allow to test the concept in a realistic environment with high rates. In this contribution, we present a PandaRoot implementation of a state-machine-based binary parser which receives detector data from the Compute Nodes via GbE links, converting the data stream into the PandaRoot format for further analysis and mass storage.

  12. PanDA for COMPASS at JINR

    Science.gov (United States)

    Petrosyan, A. Sh.

    2016-09-01

    PanDA (Production and Distributed Analysis System) is a workload management system, widely used for data processing at experiments on Large Hadron Collider and others. COMPASS is a high-energy physics experiment at the Super Proton Synchrotron. Data processing for COMPASS runs locally at CERN, on lxbatch, the data itself stored in CASTOR. In 2014 an idea to start running COMPASS production through PanDA arose. Such transformation in experiment's data processing will allow COMPASS community to use not only CERN resources, but also Grid resources worldwide. During the spring and summer of 2015 installation, validation and migration work is being performed at JINR. Details and results of this process are presented in this paper.

  13. The Endcap Disc DIRC of PANDA

    Science.gov (United States)

    Düren, M.; Etzelmüller, E.; Föhl, K.; Hayrapetyan, A.; Kröck, B.; Merle, O.; Rieke, J.; Schmidt, M.; Wasem, T.; Britting, A.; Eyrich, W.; Lehmann, A.; Pfaffinger, M.; Uhlig, F.; Belias, A.; Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Kalicy, G.; Krebs, M.; Lehmann, D.; Nerling, F.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwarz, C.; Schwiening, J.; Traxler, M.; Zühlsdorf, M.; Cowie, E.; Keri, T.; Achenbach, P.; Cardinali, M.; Hoek, M.; Lauth, W.; Schlimme, S.; Sfienti, C.; Thiel, M.

    2017-12-01

    The Endcap Disc DIRC (EDD) for PANDA has been designed to identify traversing pions, kaons and protons in the future PANDA experiment. Its central part is a 2 cm thick fused silica plate. Focussing optics are attached to the outer rim of the plate, outside of the acceptance of the experiment. Fast, high-resolution MCP-PMTs, designed to register single Cherenkov photons, have been tested in magnetic field. Filters limit the spectral acceptance of the sensors to reduce dispersion effects and to extend their lifetime. A compact and fast readout is realized with ASICs. Analytical reconstruction algorithms allow for fast particle identification. The angular resolution of a DIRC prototype has been simulated in Monte Carlo and confirmed in a test beam. The final detector will be able to provide a 4 σπ / K separation up to a momentum of 4 GeV / c .

  14. The PANDA DIRC detectors at FAIR

    Science.gov (United States)

    Schwarz, C.; Ali, A.; Belias, A.; Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Kalicy, G.; Krebs, M.; Lehmann, D.; Nerling, F.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwiening, J.; Traxler, M.; Zühlsdorf, M.; Böhm, M.; Britting, A.; Eyrich, W.; Lehmann, A.; Pfaffinger, M.; Uhlig, F.; Düren, M.; Etzelmüller, E.; Föhl, K.; Hayrapetyan, A.; Kreutzfeld, K.; Kröck, B.; Merle, O.; Rieke, J.; Schmidt, M.; Wasem, T.; Achenbach, P.; Cardinali, M.; Hoek, M.; Lauth, W.; Schlimme, S.; Sfienti, C.; Thiel, M.; Allison, L.; Hyde, C.

    2017-07-01

    The PANDA detector at the international accelerator Facility for Antiproton and Ion Research in Europe (FAIR) addresses fundamental questions of hadron physics. An excellent hadronic particle identification (PID) will be accomplished by two DIRC (Detection of Internally Reflected Cherenkov light) counters in the target spectrometer. The design for the barrel region covering polar angles between 22o to 140o is based on the successful BABAR DIRC with several key improvements, such as fast photon timing and a compact imaging region. The novel Endcap Disc DIRC will cover the smaller forward angles between 5o (10o) to 22o in the vertical (horizontal) direction. Both DIRC counters will use lifetime-enhanced microchannel plate PMTs for photon detection in combination with fast readout electronics. Geant4 simulations and tests with several prototypes at various beam facilities have been used to evaluate the designs and validate the expected PID performance of both PANDA DIRC counters.

  15. The barrel and disc DIRC counters for the PANDA experiment at FAIR

    Energy Technology Data Exchange (ETDEWEB)

    Schmidt, Mustafa [II. Physikalisches Institut, Universitaet Giessen (Germany); Collaboration: PANDA-Collaboration

    2016-07-01

    The PANDA spectrometer for the future FAIR facility at GSI will be used to address open questions in hadronic physics by investigating antiproton collisions with a fixed target in the momentum range between 1.5 GeV/c and 15 GeV/c. In order to achieve a particle identification with a high precision, two different DIRC detector concepts have been developed by PANDA, which allow a compact detector design together with an excellent performance to cleanly separate pions, kaons, and protons. The Barrel DIRC in the target spectrometer of PANDA is based on the successful BaBar DIRC with several key improvements. It is designed for polar angles between θ = 22 and θ = 140 and momenta up to 3.5 GeV/c. The Disc DIRC is part of the endcap region of the spectrometer and covers the angular range from θ = 5 /10 to θ = 22 in the forward direction of PANDA. It will provide a π/K separation with a 4-σ separation power up to a momentum of 4 GeV/c. Both Cherenkov detectors will use MCP-PMTs for the photon detection in combination with fast readout electronics. The radiators are synthetic fused silica plates with precision polished surfaces that guarantee to have very little photon losses by total reflection and conserve the Cherenkov angle during propagation through the optical system. Simulations with Geant4 and tests with several prototypes at various test beam facilities have been used to evaluate the designs and validate the expected PID performance of the DIRC counters.

  16. The PANDA physics program: Strangeness and more

    Energy Technology Data Exchange (ETDEWEB)

    Iazzi, Felice, E-mail: felice.iazzi@polito.it [INFN-Sezione di Torino, Turin (Italy); Politecnico di Torino, Turin (Italy); Collaboration: PANDA Collaboration

    2016-06-21

    The physics program of the PANDA experiment at FAIR is illustrated, with a particular attention to the planned activity in the field of the doubly strange systems. The investigation of these systems can help, among others, to shed light on the role of the hyperons in the composition of the neutron stars. The great advantages that can be reached in the field of the charmed systems and nucleon structure by using high quality and intense antiproton beams are also recalled.

  17. Palo Verde nuclear dynamic analysis (PANDA)

    International Nuclear Information System (INIS)

    Girjashankar, P.V.; Secker, P.A. Jr.; LeClair, S.J.; Mendoza, J.; Webb, J.R.

    1988-01-01

    Arizona Nuclear Power Project (ANPP) has initiated the development of a large scale dynamic analysis computer program for the Palo Verde Nuclear Generating Station (PVNGS). This paper presents the decision processes and preliminary development activities that have been pursued related to the code development. The PANDA (Palo Verde Nuclear Dynamic Analysis) code will be used for a variety of applications as described in this paper

  18. Non-conventional mesons at PANDA

    International Nuclear Information System (INIS)

    Giacosa, Francesco

    2015-01-01

    Non-conventional mesons, such as glueballs and tetraquarks, will be in the focus of the PANDA experiment at the FAIR facility. In this lecture we recall the basic properties of QCD and describe some features of unconventional states. We focus on the search of the not-yet discovered glueballs and the use of the extended Linear Sigma Model for this purpose, and on the already discovered but not-yet understood X, Y, Z states. (paper)

  19. The PANDA physics program: Strangeness and more

    International Nuclear Information System (INIS)

    Iazzi, Felice

    2016-01-01

    The physics program of the PANDA experiment at FAIR is illustrated, with a particular attention to the planned activity in the field of the doubly strange systems. The investigation of these systems can help, among others, to shed light on the role of the hyperons in the composition of the neutron stars. The great advantages that can be reached in the field of the charmed systems and nucleon structure by using high quality and intense antiproton beams are also recalled.

  20. PANDA Grid – a Tool for Physics

    International Nuclear Information System (INIS)

    Protopopescu, D; Schwarz, K

    2011-01-01

    PANDA Grid is the computing tool of the P-bar ANDA experiment at FAIR with concerted efforts dedicated to evolving it beyond passive computing infrastructure, into a complete and transparent solution for physics simulation, reconstruction and analysis, a tool right at the fingertips of the physicist. P-bar ANDA's position within the larger FAIR community, synergies with other FAIR experiments and with ALICE-LHC, together with recent progress are reported.

  1. A note on the high elevation distribution record of Red Panda Ailurus fulgens (Mammalia: Carnivora: Ailuridae in Tawang District, Arunachal Pradesh, India

    Directory of Open Access Journals (Sweden)

    D. Dorjee

    2014-08-01

    Full Text Available The present record provides one of the highest documented presence information of red pandas in India, in remote parts of western Arunachal Pradesh. The record came in the form of carcass of a Red Panda which was accidentally caught in an animal snare in remote sub-alpine mountain slopes at 4325m above sea level inside a Community Conserved Area in Tawang District, discovered during a monitoring trip by the villagers. The record also showcases the rich biodiversity of the area and the local community’s efforts to safeguard it.

  2. LWR containment safety research in PANDA

    International Nuclear Information System (INIS)

    Paladino, D.; Huggenberger, M.; Andreani, M.; Gupta, S.; Guentay, S.; Dreier, J.; Prasser, H.

    2008-01-01

    In the frame of the OECD/SETH-2 project, an experimental program is being carried out at PSI (PANDA Facility in Switzerland) and CEA (MISTRA Facility in France) with the aim of generating high-quality experimental data which will be used for improving modeling and for Lumped Parameter and 3D (CFD) code validations. The PANDA test program consists of seven types of test series, focusing on gas stratification break-up induced b) mass sources (simulating the release of steam and hydrogen), heat sources (simulating the energy) generated hydrogen-oxygen recombiner operation) or heat sinks (due to condensation of steam caused by containment coolers, sprays or 'cold' walls). Two series of PANDA tests are devoted to obtaining detailed data on the integral behavior of Passive Containment Cooling Systems (PCCS) of Advanced Light Water Reactors (ALWR) in the presence of different non-condensable gases (air; hydrogen) and also to investigating the gas mixing and stratification induced by the sudden interconnection of compartments with large gas concentration differences, e.g. the opening of rupture disks. (authors)

  3. PANDA: Protein function prediction using domain architecture and affinity propagation.

    Science.gov (United States)

    Wang, Zheng; Zhao, Chenguang; Wang, Yiheng; Sun, Zheng; Wang, Nan

    2018-02-22

    We developed PANDA (Propagation of Affinity and Domain Architecture) to predict protein functions in the format of Gene Ontology (GO) terms. PANDA at first executes profile-profile alignment algorithm to search against PfamA, KOG, COG, and SwissProt databases, and then launches PSI-BLAST against UniProt for homologue search. PANDA integrates a domain architecture inference algorithm based on the Bayesian statistics that calculates the probability of having a GO term. All the candidate GO terms are pooled and filtered based on Z-score. After that, the remaining GO terms are clustered using an affinity propagation algorithm based on the GO directed acyclic graph, followed by a second round of filtering on the clusters of GO terms. We benchmarked the performance of all the baseline predictors PANDA integrates and also for every pooling and filtering step of PANDA. It can be found that PANDA achieves better performances in terms of area under the curve for precision and recall compared to the baseline predictors. PANDA can be accessed from http://dna.cs.miami.edu/PANDA/ .

  4. Computing Activities for the PANDA Experiment at FAIR

    NARCIS (Netherlands)

    Messchendorp, Johan; Gruntorad, J; Lokajicek, M

    2010-01-01

    The PANDA experiment at the future facility FAIR will provide valuable data for our present understanding of the strong interaction. In preparation for the experiments, large-scale simulations for design and feasibility studies are performed exploiting a new software framework, PandaROOT, which is

  5. Feasibility Studies for the PANDA Experiment at FAIR

    NARCIS (Netherlands)

    Biegun, A.

    PANDA, the detector to study AntiProton ANnihilations at DArmstadt, will be installed at the future international Facility for Anti-proton and Ion Research (FAIR) in Darmstadt, Germany. The PANDA physics program is oriented towards the studies of the strong interaction and hadron structure performed

  6. FEASIBILITY STUDIES FOR THE PANDA EXPERIMENT AT FAIR

    NARCIS (Netherlands)

    Biegun, A.

    PANDA, the detector to study AntiProton ANnihilations at DArmstadt, will be installed at the future international Facility for Anti-proton and Ion Research (FAIR) in Darmstadt, Germany. The PANDA physics program is oriented towards the studies of the strong interaction and hadron structure performed

  7. Giant Chancroid

    Directory of Open Access Journals (Sweden)

    Bhushan Kumar

    1980-01-01

    Full Text Available A case of giant chancroid following rupture of inguinal bubo and having systemic symptoms is described. Response with sulfa and streptomycin combination was excellent and the lesion healed completely in 3 weeks. Early diagnosis and treatment of chancroid will prevent this debilitating complication.

  8. Giant microelectronics

    International Nuclear Information System (INIS)

    Della Sala, D.; Privato, C.; Di Lazzaro, P.; Fortunato, G.

    1999-01-01

    Giant microelectronics, on which the technology of flat liquid-crystal screens is based, is an example of fruitful interaction among independently-developed technologies, in this case thin film micro devices and laser applications. It typifies the interdisciplinary approach needed to produce innovations in microelectronics [it

  9. Conservation of Endangered Species: What Do Children Think?

    Science.gov (United States)

    Ashworth, Sarah; And Others

    1995-01-01

    Describes results of questionnaire studies of children's ideas on which species most warrant conservation and why. When six animals meriting conservation were presented, children listed them in the following order: whale, panda, elephant, monkey, shark, and crocodile. The study showed that children tend to be most influenced toward the worthiness…

  10. Current husbandry situation of red pandas in Japan.

    Science.gov (United States)

    Tanaka, Ai; Ogura, Tadatoshi

    2018-03-01

    The red panda (Ailurus fulgens) is an endangered semi-arboreal folivore with a specialized diet of bamboo leaves. Zoos worldwide maintain red pandas under a variety of housing environments and husbandry procedures that may affect the reproductive success and longevity of captive red pandas. The aims of the present study were to investigate how red pandas are kept in Japan and to obtain useful insights to increase their longevity by comparing the results from a questionnaire sent to Japanese zoos and those from a previous survey conducted in other countries. We received responses from 42 out of 52 zoos, holding a total of 219 individual red pandas, in Japan. The age-sex distribution indicated that red panda populations in Japan need close attention to be maintained sustainably. Of the husbandry aspects surveyed, the number of individuals in the same zoo, enclosure size, and the frequency of bamboo feeding factors indicated to affect reproductive success. Frequent monitoring of body weight, implementation of husbandry training, and bamboo feeding were also suggested as the reasons for the longevity of red pandas in Japan. Zoos were provided with sufficient physical features in on-exhibit enclosures, close monitoring for health status, and proper feeding, but other aspects of husbandry such as enclosure size and structures in off-exhibit spaces were insufficient and might compromise animal welfare. © 2018 Wiley Periodicals, Inc.

  11. Long Noncoding RNA PANDA Positively Regulates Proliferation of Osteosarcoma Cells.

    Science.gov (United States)

    Kotake, Yojiro; Goto, Taiki; Naemura, Madoka; Inoue, Yasutoshi; Okamoto, Haruna; Tahara, Keiichiro

    2017-01-01

    A long noncoding RNA, p21-associated ncRNA DNA damage-activated (PANDA), associates with nuclear transcription factor Y subunit alpha (NF-YA) and inhibits its binding to promoters of apoptosis-related genes, thereby repressing apoptosis in normal human fibroblasts. Here, we show that PANDA is involved in regulating proliferation in the U2OS human osteosarcoma cell line. U2OS cells were transfected with siRNAs against PANDA 72 h later and they were subjected to reverse transcription-polymerase chain reaction (RT-PCR), quantitative RT-PCR and cell-cycle analysis. PANDA was highly expressed in U2OS cells, and its expression was induced by DNA damage. Silencing PANDA caused arrest at the G 1 phase of the cell cycle, leading to inhibition of cell proliferation. Quantitative RT-PCR showed that silencing PANDA increased mRNA levels of the cyclin-dependent kinase inhibitor p18, which caused G 1 phase arrest. These results suggest that PANDA promotes G 1 -S transition by repressing p18 transcription, and thus promotes U2OS cell proliferation. Copyright© 2017 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.

  12. Parallel algorithms for online trackfinding at PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Bianchi, Ludovico; Ritman, James; Stockmanns, Tobias [IKP, Forschungszentrum Juelich GmbH (Germany); Herten, Andreas [JSC, Forschungszentrum Juelich GmbH (Germany); Collaboration: PANDA-Collaboration

    2016-07-01

    The PANDA experiment, one of the four scientific pillars of the FAIR facility currently in construction in Darmstadt, is a next-generation particle detector that will study collisions of antiprotons with beam momenta of 1.5-15 GeV/c on a fixed proton target. Because of the broad physics scope and the similar signature of signal and background events, PANDA's strategy for data acquisition is to continuously record data from the whole detector and use this global information to perform online event reconstruction and filtering. A real-time rejection factor of up to 1000 must be achieved to match the incoming data rate for offline storage, making all components of the data processing system computationally very challenging. Online particle track identification and reconstruction is an essential step, since track information is used as input in all following phases. Online tracking algorithms must ensure a delicate balance between high tracking efficiency and quality, and minimal computational footprint. For this reason, a massively parallel solution exploiting multiple Graphic Processing Units (GPUs) is under investigation. The talk presents the core concepts of the algorithms being developed for primary trackfinding, along with details of their implementation on GPUs.

  13. Multi-strangeness dynamics at PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Gaitanos, Theodoros; Lenske, Horst; Mosel, Ulrich [Institut fuer Theoretische Physik, Universitaet Giessen (Germany)

    2014-07-01

    Multi-strange bound hadron systems are excellent candidates for studying in-medium hyperon-hyperon (YY) interactions. A better understanding of the strangeness sector of the hadronic equation of state is crucial for our understanding of astrophysical objects like neutron stars. Furthermore, these studies are being motivated by actual and planed experimental activities on hypernuclear physics (HypHI and PANDA Collaborations). In fact, HypHI has already studied single-strange hypernuclei in heavy-ion collisions, whereas studies on double- and multi-strange nuclear systems are being planed by PANDA. We have reported in the past first studies on single- and double-Λ hypernuclei production in reactions induced by heavy-ions and antiprotons, respectively. The YY-interaction is still little known and many controversial theoretical predictions exist in the literature. We therefore extend our previous works by investigating the influence of various hyperon-hyperon interactions on the production dynamics of multi-Λ hypernuclei in reactions relevant for FAIR. Particular attention is paid to the heavy Ω-baryon (S=-3) and its role to the formation of multi-Λ hypernuclei in reactions induced by antiprotons.

  14. Online software trigger at PANDA/FAIR

    Energy Technology Data Exchange (ETDEWEB)

    Kang, Donghee; Kliemt, Ralf; Nerling, Frank [Helmholtz-Institut Mainz (Germany); Denig, Achim [Institut fuer Kernphysik, Universitaet Mainz (Germany); Goetzen, Klaus; Peters, Klaus [GSI Helmholtzzentrum fuer Schwerionenforschung GmbH (Germany); Collaboration: PANDA-Collaboration

    2014-07-01

    The PANDA experiment at FAIR will employ a novel trigger-less read-out system. Since a conventional hardware trigger concept is not suitable for PANDA, a high level online event filter will be applied to perform fast event selection based on physics properties of the reconstructed events. A trigger-less data stream implies an event selection with track reconstruction and pattern recognition to be performed online, and thus analysing data under real time conditions at event rates of up to 40 MHz.The projected data rate reduction of about three orders of magnitude requires an effective background rejection, while retaining interesting signal events. Real time event selection in the environment of hadronic reactions is rather challenging and relies on sophisticated algorithms for the software trigger. The implementation and the performance of physics trigger algorithms presently studied with realistic Monte Carlo simulations is discussed. The impact of parameters such as momentum or mass resolution, PID probability, vertex reconstruction and a multivariate analysis using the TMVA package for event filtering is presented.

  15. The PANDA experiment: Antiproton physics at FAIR

    International Nuclear Information System (INIS)

    Montagna, P.

    2011-01-01

    The new Facility for Antiproton and Ion Research (FAIR), under construction at the GSI laboratory at Darmstadt, in a few years will make available, among different types of beams, even antiproton beams with unique features. Through a High Energy Storage Ring (HESR) for antiprotons, an antiproton beam will be available in a momentum range from 1.5 to 15 GeV/c, which will interact on a hydrogen target. The products of the interaction, including hadronic systems with strangeness and/or charm, will be detected with the PANDA magnetic spectrometer (antiProton ANnihilation at DArmstadt), and the spectroscopic analysis will allow a detailed investigation on a number of open problems of the hadronic physics, as the quark confinement, the existence of non-conventional meson states (so-called glueballs and hybrids), the structure of hadrons and of the strong interaction, with particular attention to charmonium spectroscopy. An overview of the scientific program of PANDA and the current status of the project will be presented.

  16. Complete mitochondrial genomes of Baylisascaris schroederi, Baylisascaris ailuri and Baylisascaris transfuga from giant panda, red panda and polar bear.

    Science.gov (United States)

    Xie, Yue; Zhang, Zhihe; Wang, Chengdong; Lan, Jingchao; Li, Yan; Chen, Zhigang; Fu, Yan; Nie, Huaming; Yan, Ning; Gu, Xiaobin; Wang, Shuxian; Peng, Xuerong; Yang, Guangyou

    2011-08-15

    Roundworms of the genus Baylisascaris are the most common parasitic nematodes of the intestinal tracts of wild mammals, and most of them have significant impacts in veterinary and public health. Mitochondrial (mt) genomes provide a foundation for studying epidemiology and ecology of these parasites and therefore may be used to assist in the control of Baylisascariasis. Here, we determined the complete sequences of mtDNAs for Baylisascaris schroederi, Baylisascaris ailuri and Baylisascaris transfuga, with 14,778 bp, 14,657 bp and 14,898 bp in size, respectively. Each mtDNA encodes 12 protein-coding genes, 22 transfer RNAs and 2 ribosomal RNAs, typical for other chromadorean nematodes. The gene arrangements for the three Baylisascaris species are the same as those of the Ascaridata species, but radically different from those of the Spirurida species. Phylogenetic analysis based on concatenated amino acid sequences of 12 protein-coding genes from nine nematode species indicated that the three Baylisascaris species are more closely related to Ascaris suum than to the three Toxocara species (Toxocara canis, Toxocara cati and Toxocara malaysiensis) and Anisakis simplex, and that B. ailuri is more closely related to B. transfuga than to B. schroeder. The determination of the complete mt genome sequences for these three Baylisascaris species (the first members of the genus Baylisascaris ever sequenced) is of importance in refining the phylogenetic relationships within the order Ascaridida, and provides new molecular data for population genetic, systematic, epidemiological and ecological studies of parasitic nematodes of socio-economic importance in wildlife. Copyright © 2011 Elsevier B.V. All rights reserved.

  17. PANDAS: uma nova doença? PANDAS: a new disease?

    Directory of Open Access Journals (Sweden)

    Sheila Knupp Feitosa de Oliveira

    2007-06-01

    Full Text Available OBJETIVO: Apresentar as bases diagnósticas e analisar as evidências que têm sido apontadas para a etiopatogenia, tratamento e profilaxia de PANDAS. FONTES DOS DADOS: Revisão de literatura científica através do MEDLINE no período de 1989 a 2006. SÍNTESE DOS DADOS: Os critérios diagnósticos para PANDAS foram estabelecidos há quase 10 anos, mas ainda há muita controvérsia sobre a real existência desta nova doença pediátrica. A escolha deste nome para uma nova doença, supostamente de origem pós-estreptocócica, baseia-se no acrônimo de P (pediátrico, porque ocorre em crianças, A (auto-imune, N (neuropsiquiátrico, D (doença, A (associada e S (Streptococcus. Os tiques e os sintomas obsessivo-compulsivos são as principais manifestações clínicas da doença e surgem após infecções estreptocócicas, provavelmente por mecanismos auto-imunes. Apesar de estes sintomas neuropsiquiátricos serem comuns na coréia reumática, também de etiologia pós-estreptocócica, em PANDAS faltam os movimentos clássicos da coréia e as outras manifestações de febre reumática. As possibilidades de terapia antimicrobiana e imunológica estão sendo pesquisadas e demonstram viabilidade de uso em alguns casos. CONCLUSÕES: Pesquisas ainda são necessárias para responder à pergunta-título. Enquanto isso não ocorre, a identificação de casos de tiques e transtorno obsessivo-compulsivo em crianças deve considerar a possibilidade de PANDAS, buscando a evidência de infecção estreptocócica precedendo os episódios.OBJECTIVE: To establish the diagnostic criteria for PANDAS and to analyze the existing evidence regarding its etiopathogenesis, treatment and prophylaxis. SOURCES: Review of the scientific literature through a MEDLINE search carried out between 1989 and 2006. SUMMARY OF THE FINDINGS: The diagnostic criteria for PANDAS were established nearly 10 years ago, but a lot of controversy still exists over the actual existence of this new

  18. PANDA passive decay heat removal transient test results

    International Nuclear Information System (INIS)

    Bandurski, Th.; Dreier, J.; Huggenberger, M.

    1997-01-01

    PANDA is a large scale facility for investigating the long-term decay heat removal from the containment of a next generation of 'passive' Advanced Light Water Reactors (ALWR). PANDA was used to examine the long-term LOCA response of the Passive Containment Cooling System (PCCS) for the General Electric (GE) Simplified Boiling Water Reactor (SBWR). The first PANDA test series had the dual objectives of demonstrating the performance of the SBWR PCCS and extending the data base available for containment analysis code qualification. The test objectives also include the study of the effects of mixing and stratification of steam and noncondensible gases in the drywell (DW) and in the suppression chamber or wetwell (WW). Ten tests were conducted in the course of the PANDA SBWR Program. The tests demonstrated a favorable and robust overall PCCS performance under different conditions. The present paper focuses on the main phenomena observed during the tests with respect to PCCS operation and DW gas mixing. (author)

  19. The ATLAS PanDA Monitoring System and its Evolution

    CERN Document Server

    Klimentov, A; The ATLAS collaboration; Potekhin, M; Wenaus, T

    2011-01-01

    The PanDA (Production and Distributed Analysis) Workload Management System is used for ATLAS distributed production and analysis worldwide. The needs of ATLAS global computing imposed challenging requirements on PanDA design in areas such as scalability, robustness, automation, diagnostics, and usability for both production shifters and analysis users. Important to meeting these and other requirements is a comprehensive monitoring system. Through a system-wide job database, the PanDA monitor provides a comprehensive and coherent view of the system and job execution, from high level summaries to detailed drill-down job diagnostics. It is (like the rest of PanDA) an Apache-based Python application backed by Oracle. The presentation layer is HTML code generated on the fly in the Python application which is also responsible for managing database queries. However, this approach is lacking in user interface flexibility, simplicity of communication with external systems, and ease of maintenance. We decided to migrat...

  20. The ATLAS PanDA Monitoring System and its Evolution

    CERN Document Server

    Klimentov, A; The ATLAS collaboration; Potekhin, M; Wenaus, T

    2010-01-01

    The PanDA (Production and Distributed Analysis) Workload Management System is used for ATLAS distributed production and analysis worldwide. The needs of ATLAS global computing imposed challenging requirements on PanDA design in areas such as scalability, robustness, automation, diagnostics, and usability for both production shifters and analysis users. Important to meeting these and other requirements is a comprehensive monitoring system. Through a system-wide job database, the PanDA monitor provides a comprehensive and coherent view of the system and job execution, from high level summaries to detailed drill-down job diagnostics. It is (like the rest of PanDA) an Apache-based Python application backed by Oracle. The presentation layer is HTML code generated on the fly in the Python application which is also responsible for managing database queries. However, this approach is lacking in user interface flexibility, simplicity of communication with external systems, and ease of maintenance. We decided to migrat...

  1. Feasibility study of a transversely polarized target in PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Froehlich, Bertold [Helmholtz Institut Mainz (Germany)

    2014-07-01

    PANDA (Antiproton Annihilation at Darmstadt) is a key project at the Facility for Antiproton and Ion Research (FAIR), currently under construction at the GSI Darmstadt. PANDA is a state of the art detector for antiproton-proton fixed target experiments. A transversely polarized target in PANDA would allow the determination of the proton electromagnetic form factors in the time-like region with unprecedented accuracy and the first-time extraction of their imaginary part, opening a new window for investigating the nucleon structure. As a first step for achieving a transverse target polarization, the target region has to be shielded against the 2 T longitudinal magnetic flux from the solenoid of the PANDA spectrometer. We present numerical simulations and experimental results on intense magnetic flux shielding using a high temperature superconducting hollow cylinder.

  2. Permanent Advisory Network for Diseases in Aquaculture (PANDA)

    OpenAIRE

    Arzul, Isabelle; Ariel, E.; Hill, B.

    2005-01-01

    The PANDA project aims to establish a permanent network of aquatic animal health specialists (researchers and diagnosticians) to provide a forum for the debate of issues concerning diseases in European aquaculture, and to communicate the results of these discussions to the European Commission with provision of advice on EU policy and legislation for aquatic animal health. PANDA consists of five scientific work packages: risk analysis, epidemiology, diagnosis, environmentally safe strategies f...

  3. Event Reconstruction in the PandaRoot framework

    International Nuclear Information System (INIS)

    Spataro, Stefano

    2012-01-01

    The PANDA experiment will study the collisions of beams of anti-protons, with momenta ranging from 2-15 GeV/c, with fixed proton and nuclear targets in the charm energy range, and will be built at the FAIR facility. In preparation for the experiment, the PandaRoot software framework is under development for detector simulation, reconstruction and data analysis, running on an Alien2-based grid. The basic features are handled by the FairRoot framework, based on ROOT and Virtual Monte Carlo, while the PANDA detector specifics and reconstruction code are implemented inside PandaRoot. The realization of Technical Design Reports for the tracking detectors has pushed the finalization of the tracking reconstruction code, which is complete for the Target Spectrometer, and of the analysis tools. Particle Identification algorithms are currently implemented using Bayesian approach and compared to Multivariate Analysis methods. Moreover, the PANDA data acquisition foresees a triggerless operation in which events are not defined by a hardware 1st level trigger decision, but all the signals are stored with time stamps requiring a deconvolution by the software. This has led to a redesign of the software from an event basis to a time-ordered structure. In this contribution, the reconstruction capabilities of the Panda spectrometer will be reported, focusing on the performances of the tracking system and the results for the analysis of physics benchmark channels, as well as the new (and challenging) concept of time-based simulation and its implementation.

  4. Migration of ATLAS PanDA to CERN

    International Nuclear Information System (INIS)

    Stewart, Graeme Andrew; Klimentov, Alexei; Maeno, Tadashi; Nevski, Pavel; Nowak, Marcin; De Castro Faria Salgado, Pedro Emanuel; Wenaus, Torre; Koblitz, Birger; Lamanna, Massimo

    2010-01-01

    The ATLAS Production and Distributed Analysis System (PanDA) is a key component of the ATLAS distributed computing infrastructure. All ATLAS production jobs, and a substantial amount of user and group analysis jobs, pass through the PanDA system, which manages their execution on the grid. PanDA also plays a key role in production task definition and the data set replication request system. PanDA has recently been migrated from Brookhaven National Laboratory (BNL) to the European Organization for Nuclear Research (CERN), a process we describe here. We discuss how the new infrastructure for PanDA, which relies heavily on services provided by CERN IT, was introduced in order to make the service as reliable as possible and to allow it to be scaled to ATLAS's increasing need for distributed computing. The migration involved changing the backend database for PanDA from MySQL to Oracle, which impacted upon the database schemas. The process by which the client code was optimised for the new database backend is discussed. We describe the procedure by which the new database infrastructure was tested and commissioned for production use. Operations during the migration had to be planned carefully to minimise disruption to ongoing ATLAS offline computing. All parts of the migration were fully tested before commissioning the new infrastructure and the gradual migration of computing resources to the new system allowed any problems of scaling to be addressed.

  5. FPGA helix tracking algorithm for PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Liang, Yutie; Galuska, Martin; Gessler, Thomas; Kuehn, Wolfgang; Lange, Jens Soeren; Muenchow, David [II. Physikalisches Institut, University of Giessen (Germany); Ye, Hua [Institute of High Energy Physics, CAS (China); Collaboration: PANDA-Collaboration

    2016-07-01

    The PANDA detector is a general-purpose detector for physics with high luminosity cooled antiproton beams, planed to operate at the FAIR facility in Darmstadt, Germany. The central detector includes a silicon Micro Vertex Detector (MVD) and a Straw Tube Tracker (STT). Without any hardware trigger, large amounts of raw data are streaming into the data acquisition system. The data reduction task is performed in the online system by reconstruction algorithms programmed on FPGAs (Field Programmable Gate Arrays) as first level and on a farm of GPUs or PCs as a second level. One important part in the system is the online track reconstruction. In this presentation, an online tracking algorithm for helix tracking reconstruction in the solenoidal field is shown. The VHDL-based algorithm is tested with different types of events, at different event rate. Furthermore, a study of T0 extraction from the tracking algorithm is performed. A concept of simultaneous tracking and T0 determination is presented.

  6. FPGA helix tracking algorithm for PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Liang, Yutie; Galuska, Martin; Gessler, Thomas; Hu, Jifeng; Kuehn, Wolfgang; Lange, Jens Soeren; Muenchow, David; Spruck, Bjoern [II. Physikalisches, Giessen University (Germany); Ye, Hua [II. Physikalisches, Giessen University (Germany); Institute of High Energy Physics, Beijing (China); Collaboration: PANDA-Collaboration

    2014-07-01

    The PANDA detector is a general-purpose detector for physics with high luminosity cooled antiproton beams, planed to operate at the FAIR facility in Darmstadt, Germany. The central detector includes a silicon Micro Vertex Detector (MVD) and a Straw Tube Tracker (STT). Without any hardware trigger, large amounts of raw data are streaming into the data acquisition system. The data reduction task is performed in the online system by reconstruction algorithms programmed in VHDL (Very High Speed Integrated Circuit Hardware Description Language) on FPGAs (Field Programmable Gate Arrays) as first level and on a farm of GPUs or PCs as a second level. One important part in the system is the online track reconstruction. In this presentation, an online tracking finding algorithm for helix track reconstruction in the solenoidal field is shown. A performance study using C++ and the status of the VHDL implementation are presented.

  7. FPGA helix tracking algorithm for PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Liang, Yutie; Galuska, Martin; Gessler, Thomas; Kuehn, Wolfgang; Lange, Jens Soeren; Muenchow, David; Spruck, Bjoern [II. Physikalisches Institut, Giessen University (Germany); Ye, Hua [Institute of High Energy Physics, Beijing (China); Collaboration: PANDA-Collaboration

    2015-07-01

    The PANDA detector is a general-purpose detector for physics with high luminosity cooled antiproton beams, planed to operate at the FAIR facility in Darmstadt, Germany. The central detector includes a silicon Micro Vertex Detector (MVD) and a Straw Tube Tracker (STT). Without any hardware trigger, large amounts of raw data are streaming into the data acquisition system. The data reduction task is performed in the online system by reconstruction algorithms programmed on FPGAs (Field Programmable Gate Arrays) as first level and on a farm of GPUs or PCs as a second level. One important part in the system is the online track reconstruction. In this presentation, an online tracking algorithm for helix tracking reconstruction in the solenoidal field is shown. The tracking algorithm is composed by two parts, a road finding module followed by an iterative helix parameter calculation module. A performance study using C++ and the status of the VHDL implementation are presented.

  8. 75 FR 80110 - Panda Power LLC, Receipt of Petition for Decision of Inconsequential Noncompliance

    Science.gov (United States)

    2010-12-21

    ... Panda Power LLC (Panda Power),\\1\\ has determined that High Intensity Discharge (HID) lighting kits \\2... of Federal Motor Vehicle Safety Standard (FMVSS) No. 108, Lamps, Reflective Devices, and Associated.... \\2\\ Panda Power's high-intensity lighting (HID kits each contained 2 lamps, 2 lamp ballasts and a...

  9. PANDA: a pipeline toolbox for analyzing brain diffusion images.

    Science.gov (United States)

    Cui, Zaixu; Zhong, Suyu; Xu, Pengfei; He, Yong; Gong, Gaolang

    2013-01-01

    Diffusion magnetic resonance imaging (dMRI) is widely used in both scientific research and clinical practice in in-vivo studies of the human brain. While a number of post-processing packages have been developed, fully automated processing of dMRI datasets remains challenging. Here, we developed a MATLAB toolbox named "Pipeline for Analyzing braiN Diffusion imAges" (PANDA) for fully automated processing of brain diffusion images. The processing modules of a few established packages, including FMRIB Software Library (FSL), Pipeline System for Octave and Matlab (PSOM), Diffusion Toolkit and MRIcron, were employed in PANDA. Using any number of raw dMRI datasets from different subjects, in either DICOM or NIfTI format, PANDA can automatically perform a series of steps to process DICOM/NIfTI to diffusion metrics [e.g., fractional anisotropy (FA) and mean diffusivity (MD)] that are ready for statistical analysis at the voxel-level, the atlas-level and the Tract-Based Spatial Statistics (TBSS)-level and can finish the construction of anatomical brain networks for all subjects. In particular, PANDA can process different subjects in parallel, using multiple cores either in a single computer or in a distributed computing environment, thus greatly reducing the time cost when dealing with a large number of datasets. In addition, PANDA has a friendly graphical user interface (GUI), allowing the user to be interactive and to adjust the input/output settings, as well as the processing parameters. As an open-source package, PANDA is freely available at http://www.nitrc.org/projects/panda/. This novel toolbox is expected to substantially simplify the image processing of dMRI datasets and facilitate human structural connectome studies.

  10. PANDA: a pipeline toolbox for analyzing brain diffusion images

    Directory of Open Access Journals (Sweden)

    Zaixu eCui

    2013-02-01

    Full Text Available Diffusion magnetic resonance imaging (dMRI is widely used in both scientific research and clinical practice in in-vivo studies of the human brain. While a number of post-processing packages have been developed, fully automated processing of dMRI datasets remains challenging. Here, we developed a MATLAB toolbox named Pipeline for Analyzing braiN Diffusion imAges (PANDA for fully automated processing of brain diffusion images. The processing modules of a few established packages, including FMRIB Software Library (FSL, Pipeline System for Octave and Matlab (PSOM, Diffusion Toolkit and MRIcron, were employed in PANDA. Using any number of raw dMRI datasets from different subjects, in either DICOM or NIfTI format, PANDA can automatically perform a series of steps to process DICOM/NIfTI to diffusion metrics (e.g., FA and MD that are ready for statistical analysis at the voxel-level, the atlas-level and the Tract-Based Spatial Statistics (TBSS-level and can finish the construction of anatomical brain networks for all subjects. In particular, PANDA can process different subjects in parallel, using multiple cores either in a single computer or in a distributed computing environment, thus greatly reducing the time cost when dealing with a large number of datasets. In addition, PANDA has a friendly graphical user interface (GUI, allowing the user to be interactive and to adjust the input/output settings, as well as the processing parameters. As an open-source package, PANDA is freely available at http://www.nitrc.org/projects/panda/. This novel toolbox is expected to substantially simplify the image processing of dMRI datasets and facilitate human structural connectome studies.

  11. The Straw Tube Trackers of the PANDA Experiment

    International Nuclear Information System (INIS)

    Gianotti, P.; Lucherini, V.; Pace, E.; Boca, G.L.; Costanza, S.; Genova, P.; Lavezzi, L.; Montanga, P.; Rotondi, A.; Bragadireanu, M.; Vasile, M.E.; Pietreanu, D.; Biernat, J.; Jowzaee, S.; Korcyl, G.; Palka, M.; Salabura, P.; Smyrski, J.; Fiutowski, T.; Idzik, M.; Przyborowski, D.; Korcyl, K.; Kulessa, P.; Pysz, K.; Dobbs, S.; Tomaradze, A.; Bettoni, D.; Fioravanti, E.; Garzia, I.; Savrie, M.; Kozlov, V.; Mertens, M.; Ohm, H.; Orfanitski, S.; Ritman, J.; Serdyuk, V.; Wintz, P.; Spataro, S.

    2013-06-01

    The PANDA experiment will be built at the FAIR facility at Darmstadt (Germany) to perform accurate tests of the strong interaction through p-bar p and p-bar A annihilation's studies. To track charged particles, two systems consisting of a set of planar, closed-packed, self-supporting straw tube layers are under construction. The PANDA straw tubes will have also unique characteristics in term of material budget and performance. They consist of very thin mylar-aluminized cathodes which are made self-supporting by means of the operation gas-mixture over-pressure. This solution allows to reduce at maximum the weight of the mechanical support frame and hence the detector material budget. The PANDA straw tube central tracker will not only reconstruct charged particle trajectories, but also will help in low momentum (< 1 GeV) particle identification via dE/dx measurements. This is a quite new approach that PANDA tracking group has first tested with detailed Monte Carlo simulations, and then with experimental tests of detector prototypes. This paper addresses the design issues of the PANDA straw tube trackers and the performance obtained in prototype tests. (authors)

  12. The PandaRoot framework for simulation, reconstruction and analysis

    International Nuclear Information System (INIS)

    Spataro, Stefano

    2011-01-01

    The PANDA experiment at the future facility FAIR will study anti-proton proton and anti-proton nucleus collisions in a beam momentum range from 2 GeV/c up to 15 GeV/c. The PandaRoot framework is part of the FairRoot project, a common software framework for the future FAIR experiments, and is currently used to simulate detector performances and to evaluate different detector concepts. It is based on the packages ROOT and Virtual MonteCarlo with Geant3 and Geant4. Different reconstruction algorithms for tracking and particle identification are under development and optimization, in order to achieve the performance requirements of the experiment. In the central tracker a first track fit is performed using a conformal map transformation based on a helix assumption, then the track is used as input for a Kalman Filter (package genfit), using GEANE as track follower. The track is then correlated to the pid detectors (e.g. Cerenkov detectors, EM Calorimeter or Muon Chambers) to evaluate a global particle identification probability, using a Bayesian approach or multivariate methods. Further implemented packages in PandaRoot are: the analysis tools framework Rho, the kinematic fitter package for vertex and mass constraint fits, and a fast simulation code based upon parametrized detector responses. PandaRoot was also tested on an Alien-based GRID infrastructure. The contribution will report about the status of PandaRoot and show some example results for analysis of physics benchmark channels.

  13. The ATLAS PanDA Monitoring System and its Evolution

    Science.gov (United States)

    Klimentov, A.; Nevski, P.; Potekhin, M.; Wenaus, T.

    2011-12-01

    The PanDA (Production and Distributed Analysis) Workload Management System is used for ATLAS distributed production and analysis worldwide. The needs of ATLAS global computing imposed challenging requirements on the design of PanDA in areas such as scalability, robustness, automation, diagnostics, and usability for both production shifters and analysis users. Through a system-wide job database, the PanDA monitor provides a comprehensive and coherent view of the system and job execution, from high level summaries to detailed drill-down job diagnostics. It is (like the rest of PanDA) an Apache-based Python application backed by Oracle. The presentation layer is HTML code generated on the fly in the Python application which is also responsible for managing database queries. However, this approach is lacking in user interface flexibility, simplicity of communication with external systems, and ease of maintenance. A decision was therefore made to migrate the PanDA monitor server to Django Web Application Framework and apply JSON/AJAX technology in the browser front end. This allows us to greatly reduce the amount of application code, separate data preparation from presentation, leverage open source for tools such as authentication and authorization mechanisms, and provide a richer and more dynamic user experience. We describe our approach, design and initial experience with the migration process.

  14. The ATLAS PanDA Monitoring System and its Evolution

    International Nuclear Information System (INIS)

    Klimentov, A; Nevski, P; Wenaus, T; Potekhin, M

    2011-01-01

    The PanDA (Production and Distributed Analysis) Workload Management System is used for ATLAS distributed production and analysis worldwide. The needs of ATLAS global computing imposed challenging requirements on the design of PanDA in areas such as scalability, robustness, automation, diagnostics, and usability for both production shifters and analysis users. Through a system-wide job database, the PanDA monitor provides a comprehensive and coherent view of the system and job execution, from high level summaries to detailed drill-down job diagnostics. It is (like the rest of PanDA) an Apache-based Python application backed by Oracle. The presentation layer is HTML code generated on the fly in the Python application which is also responsible for managing database queries. However, this approach is lacking in user interface flexibility, simplicity of communication with external systems, and ease of maintenance. A decision was therefore made to migrate the PanDA monitor server to Django Web Application Framework and apply JSON/AJAX technology in the browser front end. This allows us to greatly reduce the amount of application code, separate data preparation from presentation, leverage open source for tools such as authentication and authorization mechanisms, and provide a richer and more dynamic user experience. We describe our approach, design and initial experience with the migration process.

  15. Online tracking with GPUs at the PANDA experiment

    Energy Technology Data Exchange (ETDEWEB)

    Bianchi, Ludovico; Herten, Andreas; Ritman, James; Stockmanns, Tobias [Forschungszentrum Juelich (Germany); Collaboration: PANDA-Collaboration

    2015-07-01

    The PANDA experiment is a next generation particle detector planned for operation at the FAIR facility, that will study collisions of antiprotons with beam momenta of 1.5-15 GeV/c on a fixed proton target. Signal and background events at PANDA will look very similar, making a conventional hardware-trigger based approach unfeasible. Instead, data coming from the detector are acquired continuously, and event selection is performed in real time. A rejection factor of up to 1000 is needed to reduce the data rate for offline storage, making the data acquisition system computationally very challenging. Our activity within the PANDA collaboration is centered on the development and implementation of particle tracking algorithms on Graphical Processing Units (GPUs), and on studying the possibility of performing tracking for online event filtering using a multi-GPU architecture. Three algorithms are currently being developed, using information from the PANDA tracking system: a Hough Transform, a Riemann Track Finder, and a Triplet Finder algorithm. This talk presents the algorithms, their performance, and studies for GPU data transfer methods based on so-called message queues for a deeper integration of the algorithms with the FairRoot and PandaRoot frameworks.

  16. Overview of ATLAS PanDA Workload Management

    Science.gov (United States)

    Maeno, T.; De, K.; Wenaus, T.; Nilsson, P.; Stewart, G. A.; Walker, R.; Stradling, A.; Caballero, J.; Potekhin, M.; Smith, D.; ATLAS Collaboration

    2011-12-01

    The Production and Distributed Analysis System (PanDA) plays a key role in the ATLAS distributed computing infrastructure. All ATLAS Monte-Carlo simulation and data reprocessing jobs pass through the PanDA system. We will describe how PanDA manages job execution on the grid using dynamic resource estimation and data replication together with intelligent brokerage in order to meet the scaling and automation requirements of ATLAS distributed computing. PanDA is also the primary ATLAS system for processing user and group analysis jobs, bringing further requirements for quick, flexible adaptation to the rapidly evolving analysis use cases of the early datataking phase, in addition to the high reliability, robustness and usability needed to provide efficient and transparent utilization of the grid for analysis users. We will describe how PanDA meets ATLAS requirements, the evolution of the system in light of operational experience, how the system has performed during the first LHC data-taking phase and plans for the future.

  17. Overview of ATLAS PanDA Workload Management

    International Nuclear Information System (INIS)

    Maeno, T.; De, K.; Wenaus, T.; Nilsson, P.; Stewart, G.A.; Walker, R.; Stradling, A.; Caballero, J.; Potekhin, M.; Smith, D.

    2011-01-01

    The Production and Distributed Analysis System (PanDA) plays a key role in the ATLAS distributed computing infrastructure. All ATLAS Monte-Carlo simulation and data reprocessing jobs pass through the PanDA system. We will describe how PanDA manages job execution on the grid using dynamic resource estimation and data replication together with intelligent brokerage in order to meet the scaling and automation requirements of ATLAS distributed computing. PanDA is also the primary ATLAS system for processing user and group analysis jobs, bringing further requirements for quick, flexible adaptation to the rapidly evolving analysis use cases of the early datataking phase, in addition to the high reliability, robustness and usability needed to provide efficient and transparent utilization of the grid for analysis users. We will describe how PanDA meets ATLAS requirements, the evolution of the system in light of operational experience, how the system has performed during the first LHC data-taking phase and plans for the future.

  18. PandaEPL: a library for programming spatial navigation experiments.

    Science.gov (United States)

    Solway, Alec; Miller, Jonathan F; Kahana, Michael J

    2013-12-01

    Recent advances in neuroimaging and neural recording techniques have enabled researchers to make significant progress in understanding the neural mechanisms underlying human spatial navigation. Because these techniques generally require participants to remain stationary, computer-generated virtual environments are used. We introduce PandaEPL, a programming library for the Python language designed to simplify the creation of computer-controlled spatial-navigation experiments. PandaEPL is built on top of Panda3D, a modern open-source game engine. It allows users to construct three-dimensional environments that participants can navigate from a first-person perspective. Sound playback and recording and also joystick support are provided through the use of additional optional libraries. PandaEPL also handles many tasks common to all cognitive experiments, including managing configuration files, logging all internal and participant-generated events, and keeping track of the experiment state. We describe how PandaEPL compares with other software for building spatial-navigation experiments and walk the reader through the process of creating a fully functional experiment.

  19. Status and Evolution of ATLAS Workload Management System PanDA

    CERN Document Server

    AUTHOR|(CDS)2067365; The ATLAS collaboration

    2012-01-01

    The ATLAS experiment at the LHC uses a sophisticated workload management system, PanDA, to provide access for thousands of physicists to distributed computing resources of unprecedented scale. This system has proved to be robust and scalable during three years of LHC operations. We describe the design and performance of PanDA in ATLAS. The features which make PanDA successful in ATLAS could be applicable to other exabyte scale scientific projects. We describe plans to evolve PanDA towards a general workload management system for the new BigData initiative announced by the US government. Other planned future improvements to PanDA will also be described

  20. Transforming giants.

    Science.gov (United States)

    Kanter, Rosabeth Moss

    2008-01-01

    Large corporations have long been seen as lumbering, inflexible, bureaucratic--and clueless about global developments. But recently some multinationals seem to be transforming themselves: They're engaging employees, moving quickly, and introducing innovations that show true connection with the world. Harvard Business School's Kanter ventured with a research team inside a dozen global giants--including IBM, Procter & Gamble, Omron, CEMEX, Cisco, and Banco Real--to discover what has been driving the change. After conducting more than 350 interviews on five continents, she and her colleagues came away with a strong sense that we are witnessing the dawn of a new model of corporate power: The coordination of actions and decisions on the front lines now appears to stem from widely shared values and a sturdy platform of common processes and technology, not from top-down decrees. In particular, the values that engage the passions of far-flung workforces stress openness, inclusion, and making the world a better place. Through this shift in what might be called their guidance systems, the companies have become as creative and nimble as much smaller ones, even while taking on social and environmental challenges of a scale that only large enterprises could attempt. IBM, for instance, has created a nonprofit partnership, World Community Grid, through which any organization or individual can donate unused computing power to research projects and see what is being done with the donation in real time. IBM has gained an inspiring showcase for its new technology, helped business partners connect with the company in a positive way, and offered individuals all over the globe the chance to contribute to something big.

  1. Giant Cell Arteritis

    Science.gov (United States)

    Giant cell arteritis is a disorder that causes inflammation of your arteries, usually in the scalp, neck, and arms. ... arteries, which keeps blood from flowing well. Giant cell arteritis often occurs with another disorder called polymyalgia ...

  2. PANDAS: The Need to Use Definitive Diagnostic Criteria

    Directory of Open Access Journals (Sweden)

    Harvey S. Singer

    2015-07-01

    Full Text Available The entity Pediatric Autoimmune Neuropsychiatric Disorders Associated with Streptococcal infections (PANDAS was initially proposed in 1998 (Swedo, et al. 1998. The formal diagnosis required that the affected individual meet five specific criteria: prepubertal onset, obsessive compulsive disorder (OCD and/or a tic disorder, the dramatic sudden explosive onset of symptoms, a relapsing and remitting course of symptoms that are temporally associated with Group A beta-hemolytic streptococcal (GABHS infection, and the presence of other neuropsychiatric abnormalities (hyperactivity, emotional lability, anxiety, or piano-playing choreiform movements. Since that original report, the PANDAS hypothesis has remained controversial based on both clinical grounds and the failure to confirm a definitive immune process.  This editorial was written in response to:Helm CE, Blackwood RA. Pediatric autoimmune neuropsychiatric disorder associated with streptococcal infections (PANDAS: Experience at a tertiary referral center. Tremor Other Hyperkinet Mov. 2015; 5. doi: 10.7916/D8348JCX 

  3. PANDA: A Multipurpose Integral Test Facility for LWR Safety Investigations

    International Nuclear Information System (INIS)

    Paladino, D.; Dreier, J.

    2012-01-01

    The PANDA facility is a large scale, multicompartmental thermal hydraulic facility suited for investigations related to the safety of current and advanced LWRs. The facility is multipurpose, and the applications cover integral containment response tests, component tests, primary system tests, and separate effect tests. Experimental investigations carried on in the PANDA facility have been embedded in international projects, most of which under the auspices of the EU and OECD and with the support of a large number of organizations (regulatory bodies, technical dupport organizations, national laboratories, electric utilities, industries) worldwide. The paper provides an overview of the research programs performed in the PANDA facility in relation to BWR containment systems and those planned for PWR containment systems.

  4. Gastric dilitation-volvulus in a Red Panda (Ailurus fulgens).

    Science.gov (United States)

    Schlanser, Justin R; Agnew, Dalen; Paperd, Deborah W; Harrison, Tara M

    2014-06-01

    A 10-year-old male red panda presented acutely with symptoms of shock due to acute abdominal distress and respiratory compromise. Abdominal ultrasound confirmed a severely distended stomach for which passage of an orogastric tube for relief was unsuccessful. Intra-operatively, the stomach was found to be distended and torsed around its long axis supporting the diagnosis of Gastric dilitation-volvulus (GDV). The animal arrested and died intra-operatively and was submitted for necropsy with lesions supportive of the diagnosis of GDV. No risk factors for GDV were found to correlate between the panda and those described in domestic dogs. This case suggests that red pandas can be susceptible to this condition in captive settings.

  5. Integration Of PanDA Workload Management System With Supercomputers

    CERN Document Server

    Klimentov, Alexei; The ATLAS collaboration; Maeno, Tadashi; Mashinistov, Ruslan; Nilsson, Paul; Oleynik, Danila; Panitkin, Sergey; Read, Kenneth; Ryabinkin, Evgeny; Wenaus, Torre

    2015-01-01

    The Large Hadron Collider (LHC), operating at the international CERN Laboratory in Geneva, Switzerland, is leading Big Data driven scientific explorations. Experiments at the LHC explore the fundamental nature of matter and the basic forces that shape our universe, and were recently credited for the discovery of a Higgs boson. ATLAS, one of the largest collaborations ever assembled in the sciences, is at the forefront of research at the LHC. To address an unprecedented multi-petabyte data processing challenge, the ATLAS experiment is relying on a heterogeneous distributed computational infrastructure. The ATLAS experiment uses PanDA (Production and Data Analysis) Workload Management System for managing the workflow for all data processing on over 140 data centers. Through PanDA, ATLAS physicists see a single computing facility that enables rapid scientific breakthroughs for the experiment, even though the data centers are physically scattered all over the world. While PanDA currently uses more than 100,000 co...

  6. Recent Improvements in the ATLAS PanDA Pilot

    International Nuclear Information System (INIS)

    Nilsson, P; De, K; Bejar, J Caballero; Maeno, T; Potekhin, M; Wenaus, T; Compostella, G; Contreras, C; Dos Santos, T

    2012-01-01

    The Production and Distributed Analysis system (PanDA) in the ATLAS experiment uses pilots to execute submitted jobs on the worker nodes. The pilots are designed to deal with different runtime conditions and failure scenarios, and support many storage systems. This talk will give a brief overview of the PanDA pilot system and will present major features and recent improvements including CernVM File System integration, the job retry mechanism, advanced job monitoring including JEM technology, and validation of new pilot code using the HammerCloud stress-testing system. PanDA is used for all ATLAS distributed production and is the primary system for distributed analysis. It is currently used at over 130 sites worldwide. We analyze the performance of the pilot system in processing LHC data on the OSG, EGI and Nordugrid infrastructures used by ATLAS, and describe plans for its further evolution.

  7. The ATLAS PanDA Pilot in Operation

    International Nuclear Information System (INIS)

    Nilsson, P; De, K; Stradling, A; Caballero, J; Maeno, T; Wenaus, T

    2011-01-01

    The Production and Distributed Analysis system (PanDA) was designed to meet ATLAS requirements for a data-driven workload management system capable of operating at LHC data processing scale. Submitted jobs are executed on worker nodes by pilot jobs sent to the grid sites by pilot factories. This paper provides an overview of the PanDA pilot system and presents major features added in light of recent operational experience, including multi-job processing, advanced job recovery for jobs with output storage failures, gLExec based identity switching from the generic pilot to the actual user, and other security measures. The PanDA system serves all ATLAS distributed processing and is the primary system for distributed analysis; it is currently used at over 100 sites worldwide. We analyze the performance of the pilot system in processing real LHC data on the OSG, EGI and Nordugrid infrastructures used by ATLAS, and describe plans for its evolution.

  8. The future of PanDA in ATLAS distributed computing

    Science.gov (United States)

    De, K.; Klimentov, A.; Maeno, T.; Nilsson, P.; Oleynik, D.; Panitkin, S.; Petrosyan, A.; Schovancova, J.; Vaniachine, A.; Wenaus, T.

    2015-12-01

    Experiments at the Large Hadron Collider (LHC) face unprecedented computing challenges. Heterogeneous resources are distributed worldwide at hundreds of sites, thousands of physicists analyse the data remotely, the volume of processed data is beyond the exabyte scale, while data processing requires more than a few billion hours of computing usage per year. The PanDA (Production and Distributed Analysis) system was developed to meet the scale and complexity of LHC distributed computing for the ATLAS experiment. In the process, the old batch job paradigm of locally managed computing in HEP was discarded in favour of a far more automated, flexible and scalable model. The success of PanDA in ATLAS is leading to widespread adoption and testing by other experiments. PanDA is the first exascale workload management system in HEP, already operating at more than a million computing jobs per day, and processing over an exabyte of data in 2013. There are many new challenges that PanDA will face in the near future, in addition to new challenges of scale, heterogeneity and increasing user base. PanDA will need to handle rapidly changing computing infrastructure, will require factorization of code for easier deployment, will need to incorporate additional information sources including network metrics in decision making, be able to control network circuits, handle dynamically sized workload processing, provide improved visualization, and face many other challenges. In this talk we will focus on the new features, planned or recently implemented, that are relevant to the next decade of distributed computing workload management using PanDA.

  9. Prototype test for the PANDA barrel DIRC

    Energy Technology Data Exchange (ETDEWEB)

    Dzhygadlo, Roman; Gerhardt, Andreas; Kalicy, Grzegorz; Krebs, Marvin; Lehmann, Dorothe; Schwarz, Carsten; Schwiening, Jochen; Belias, Anastasios; Traxler, Michael [GSI Helmholtzzentrum fur Schwerionenforschung GmbH, Darmstadt (Germany); Peters, Klaus [GSI Helmholtzzentrum fur Schwerionenforschung GmbH, Darmstadt (Germany); Goethe-Universitaet Frankfurt (Germany); Collaboration: PANDA-Collaboration

    2016-07-01

    The Barrel DIRC (Detector of Internally Reflected Cherenkov light) is designed to provide particle identification (PID) for the PANDA experiment at the new Facility for Antiproton and Ion Research in Europe (FAIR) at GSI, Darmstadt. It is based on the successful BABAR DIRC detector with several key improvements, such as focusing optics, fast timing, and a compact expansion volume. A large prototype was constructed and tested in a hadronic particle beam at CERN during the summer of 2015 to test the PID performance of different design options. The prototype included a fused silica radiator (either a narrow bar or a wide plate), an optional focusing lens, and a prism-shaped fused silica expansion volume. An array of microchannel-plate photomultiplier tubes measured the location and arrival time of the Cherenkov photons on 960 pixels. Data were collected for two radiator geometries and several types of focusing lenses at different beam momenta and polar angles. Results of the analysis as well as a comparison to the Geant4 simulation are presented.

  10. Low noise preamplifier ASIC for the PANDA experiment

    International Nuclear Information System (INIS)

    Flemming, H; Wieczorek, P

    2011-01-01

    For the electromagnetic calorimeter of the PANDA detector a preamplifier ASIC named APFEL (ASIC for Panda Front-end ELectronics) has been developed at GSI. It is optimized for the readout of large area avalanche photodiodes (LAAPDs) with a capacitance of 300 pF and an event rate of 350 kHz. The ASIC has two equivalent analog channels each consisting of a charge sensitive amplifier, a shaper stage and differential output drivers. For operating the ASIC in a wide temperature range programmable voltage references are implemented on chip.

  11. Tests of optical glues for the PANDA electromagnetic calorimeter

    NARCIS (Netherlands)

    Dbeyssi, A.; Tomasi-Gustafsson, E.; Hennino, T.; Imre, M.; Kunne, R.; Le Galliard, C.; Marchand, D.; Maroni, A.; Ramstein, B.; Rosier, P.; Bremer, D.; Dormenev, V.; Eissner, T.; Kuske, T.; Novotny, R.; Moeini, H.; Bondarenko, O.; Kavatsyuk, M.; Loehner, H.; Messchendorp, G.; Tambave, G.

    2013-01-01

    This paper reports on the results of tests for low temperature applications of two commercial optical glues in the electromagnetic calorimeter of PANDA at FAIR. Mechanical, thermal and optical properties are presented, as well as radiation hardness to photon and proton radiation. (C) 2013 Elsevier

  12. Feature-extraction algorithms for the PANDA electromagnetic calorimeter

    NARCIS (Netherlands)

    Kavatsyuk, M.; Guliyev, E.; Lemmens, P. J. J.; Loehner, H.; Poelman, T. P.; Tambave, G.; Yu, B

    2009-01-01

    The feature-extraction algorithms are discussed which have been developed for the digital front-end electronics of the electromagnetic calorimeter of the PANDA detector at the future FAIR facility. Performance parameters have been derived in test measurements with cosmic rays, particle and photon

  13. Development of a cluster-jet target for PANDA

    International Nuclear Information System (INIS)

    Gruber, A.; Marton, J.; Widmann, E.; Zmeskal, J.; PANDA Cluster Jet Target Group

    2006-01-01

    Full text: The Stefan Meyer Institute (SMI) is part of the international PANDA collaboration. The universal detector will be constructed for the future high-energy antiproton storage ring HESR at FAIR (Facility for Antiproton and Ion Research, GSI/Darmstadt). PANDA will use antiproton beams (1.5 to 15 GeV/c) for hadron physics in the charmonium region. The physics program of PANDA will comprehend charmonium spectroscopy below and above open charm threshold, search for exotics (glueballs, hybrids), lambda and double-lambda hypernuclei studies and the investigation of in-medium modifications of charmed mesons - an experimentally unexplored field. SMI contributes to major parts of the PANDA detector like the hydrogen cluster-jet target and the antiproton - cluster jet interaction zone: in order to reach the desired target density, an optimization of the nozzle and the skimmer arrangement is essential. A density-profile monitor for the cluster-jet was designed and built at SMI. Several nozzle types have been studied using different gases, temperatures and inlet pressures. To ensure low background the residual gas load in the interaction zone has to be minimized. The installation of NEG (non-evaporative-getter) coated beam pipes is planned. A prototype of the interaction zone has been set up at SMI. The pumping capacity of NEG and the reactivation cycles were tested. The status of the development of the cluster-jet target and studies of the interaction region will be presented (author)

  14. The ψ(4040) at the future PANDA experiment

    International Nuclear Information System (INIS)

    Zotti, L; Marcello, S; Spataro, S; Filippi, A

    2014-01-01

    The PANDA experiment will be carried out at the future FAIR facility, it will be a fixed target experiment, where antiproton beams, of unprecedented quality and intensity, will be used to study interactions on protons and on nuclei. PANDA will be an excellent tool to investigate those final states which include short-lived particles. Since different charmonium states can be accessed in direct formation with all the available quantum numbers in p-bar p annihilations, the charmonium spectroscopy is one of the main goal of the experiment. The PANDA experiment represents a unique possibility to improve both statistics and precision of existing data and to further explore the physics in the charm quark sector. Indeed, an energy scan with high precision over the full charm spectrum is still missing and it will not be delivered by future experiments currently planned as upgrade of the existing facilities. A detailed description of the possibility to reconstruct the ψ(4040) → D *+ D *− at PANDA, together with the study of the huge hadronic background suppression will be presented. The importance of the Micro-Vertex Detector for the reconstruction of D mesons decay will be showed.

  15. Ennekuulmatud loomalaulud / Panda Bear (Noah Lennox) ; interv. Siim Nestor

    Index Scriptorium Estoniae

    Panda Bear (Noah Lennox)

    2006-01-01

    Intervjuu eksperimentaalset popmuusikat viljeleva ameerika ansambli Animal Collective laulja Panda Bear'iga (kontsert 4. juulil Tallinnas Lillepaviljonis). Heliplaatidest: "Spirit They're Gone, Spirit They've Vanished", "Danse Manatee", "Hollindagain", "Campfire Songs", "Here Comes the Indian", "Sung Tongs", "Feels"

  16. Simulation and event reconstruction inside the PandaRoot framework

    International Nuclear Information System (INIS)

    Spataro, S

    2008-01-01

    The PANDA detector will be located at the future GSI accelerator FAIR. Its primary objective is the investigation of strong interaction with anti-proton beams, in the range up to 15 GeV/c as momentum of the incoming anti-proton. The PANDA offline simulation framework is called 'PandaRoot', as it is based upon the ROOT 5.14 package. It is characterized by a high versatility; it allows to perform simulation and analysis, to run different event generators (EvtGen, Pluto, UrQmd), different transport models (Geant3, Geant4, Fluka) with the same code, thus to compare the results simply by changing few macro lines without recompiling at all. Moreover auto-configuration scripts allow installing the full framework easily in different Linux distributions and with different compilers (the framework was installed and tested in more than 10 Linux platforms) without further manipulation. The final data are in a tree format, easily accessible and readable through simple clicks on the root browsers. The presentation will report on the actual status of the computing development inside the PandaRoot framework, in terms of detector implementation and event reconstruction

  17. Annotation: PANDAS--A Model for Human Autoimmune Disease

    Science.gov (United States)

    Swedo, Susan E.; Grant, Paul J.

    2005-01-01

    Background: Pediatric Autoimmune Neuropsychiatric Disorders Associated with Streptococcus infections (PANDAS) is a recently recognized syndrome in which pre-adolescent children have abrupt onsets of tics and/or obsessive-compulsive symptoms, a recurring and remitting course of illness temporally related to streptococcal infections, and associated…

  18. Modelling of particular phenomena observed in PANDA with Gothic

    International Nuclear Information System (INIS)

    Bandurski, Th.; Putz, F.; Andreani, M.; Analytis, M.

    2000-01-01

    PANDA is a large scale facility for investigating the long-term decay heat removal from the containment of a next generation 'passive' Advanced Light Water Reactor (ALWR). The first test series was aimed at the investigation of the long-term LOCA response of the Passive Containment Cooling System (PCCS) for the General Electric (GE) Simplified Boiling Water Reactor (SBWR). Recently, the facility is used in the framework of two European projects for investigating the performance of four passive cooling systems, i.e. the Building Condenser (BC) designed by Siemens for the SWR-1000 long-term containment cooling, the Passive Containment Cooling System for the European Simplified Boiling Water Reactor (ESBWR), the Containment Plate Condenser (CPC) and the Isolation Condenser (IC) for cooling of a BWR core. The PANDA tests have the dual objectives of improving confidence in the performance of the passive heat removal mechanisms underlying the design of the tested safety systems and extending the data base available for containment analysis code qualification. Among others, the containment analysis code Gothic was chosen for the analysis of particular phenomena observed during the PANDA tests. Ibis paper presents selected safety relevant phenomena observed in the PANDA tests and identified for the analyses and possible approaches for their modeling with Gothic. (author)

  19. GPU implementations of online track finding algorithms at PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Herten, Andreas; Stockmanns, Tobias; Ritman, James [Institut fuer Kernphysik, Forschungszentrum Juelich GmbH (Germany); Adinetz, Andrew; Pleiter, Dirk [Juelich Supercomputing Centre, Forschungszentrum Juelich GmbH (Germany); Kraus, Jiri [NVIDIA GmbH (Germany); Collaboration: PANDA-Collaboration

    2014-07-01

    The PANDA experiment is a hadron physics experiment that will investigate antiproton annihilation in the charm quark mass region. The experiment is now being constructed as one of the main parts of the FAIR facility. At an event rate of 2 . 10{sup 7}/s a data rate of 200 GB/s is expected. A reduction of three orders of magnitude is required in order to save the data for further offline analysis. Since signal and background processes at PANDA have similar signatures, no hardware-level trigger is foreseen for the experiment. Instead, a fast online event filter is substituting this element. We investigate the possibility of using graphics processing units (GPUs) for the online tracking part of this task. Researched algorithms are a Hough Transform, a track finder involving Riemann surfaces, and the novel, PANDA-specific Triplet Finder. This talk shows selected advances in the implementations as well as performance evaluations of the GPU tracking algorithms to be used at the PANDA experiment.

  20. New physics and technical challenges of anti PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Gianotti, P. [LNF, Frascati (Italy)

    2007-03-15

    An antiproton beam of unprecedented intensity and quality will soon be available at the HESR machine foreseen for the new FAIR accelerator complex of Darmstadt. This new facility, together with a properly designed new detector (anti PANDA), will be the ideal environment to study fundamental questions of hadron and nuclear physics and to carry out precise tests of the strong interaction. (orig.)

  1. Panda-Monium at the Library: 1995 Arizona Reading Program.

    Science.gov (United States)

    Arizona State Dept. of Library, Archives and Public Records, Phoenix.

    Panda bears are the theme of this guide which includes many reading-related activities, crafts, and programs on a broad range of topics, and which can be expanded to other theme approaches such as endangered species, bears in general, and the concept of black and white. The program begins with a general definition and discussion of goals,…

  2. Online cluster-finding algorithms for the PANDA electromagnetic calorimeter

    NARCIS (Netherlands)

    Tiemens, Marcel

    2017-01-01

    Om zeldzame processen zoals de vorming van exotische deeltjes te kunnen bestuderen, is het PANDA experiment opgezet. Om de grote hoeveelheden data te kunnen verwerken, verwerken de subsystemen de data voor. Een voorbeeld is het algoritme om online naar clusters te zoeken in de data van de

  3. Performance of the prototype of the electromagnetic calorimeter for PANDA

    NARCIS (Netherlands)

    Kavatsyuk, M.; Bremer, D.; Dormenev, V.; Drexler, P.; Eissner, T.; Erni, W.; Guliyev, E.; Hennino, T.; Krusche, B.; Lewandowski, B.; Löhner, H.; Moritz, M.; Novotny, R. W.; Peters, K.; Pouthas, J.; Rosier, P.; Steinacher, M.; Tambave, G.; Wilms, A.

    2011-01-01

    The PANDA collaboration at FAIR, Germany, will employ antiproton annihilations to investigate yet undiscovered charm-meson states and glueballs. The aim is to study QCD phenomena in the non-perturbative regime and to unravel the origin of hadronic masses. A multi-purpose detector for tracking,

  4. The Future of PanDA in ATLAS Distributed Computing

    CERN Document Server

    De, Kaushik; The ATLAS collaboration; Maeno, Tadashi; Nilsson, Paul; Oleynik, Danila; Panitkin, Sergey; Petrosyan, Artem; Schovancova, Jaroslava; Vaniachine, Alexandre; Wenaus, Torre

    2015-01-01

    Experiments at the Large Hadron Collider (LHC) face unprecedented computing challenges. Heterogeneous resources are distributed worldwide at hundreds of sites, thousands of physicists analyze the data remotely, the volume of processed data is beyond the exabyte scale, while data processing requires more than a few billion hours of computing usage per year. The PanDA (Production and Distributed Analysis) system was developed to meet the scale and complexity of LHC distributed computing for the ATLAS experiment. In the process, the old batch job paradigm of locally managed computing in HEP was discarded in favor of a far more automated, flexible and scalable model. The success of PanDA in ATLAS is leading to widespread adoption and testing by other experiments. PanDA is the first exascale workload management system in HEP, already operating at more than a million computing jobs per day, and processing over an exabyte of data in 2013. There are many new challenges that PanDA will face in the near future, in addi...

  5. Tracking with Straw Tubes in the PANDA Experiment

    Directory of Open Access Journals (Sweden)

    Bragadireanu M.

    2014-03-01

    Full Text Available The PANDA spectrometer will be built at the FAIR facility at Darmstadt (Germany to perform accurate tests of the strong interaction through ¯pp and ¯pA annihilation studies. The charged particle tracking at PANDA will be done using both solid state and gaseous detectors. Among the latter, two straw tube detector systems will be built [1]. The cylindrical, central straw tube tracker features a high spatial and momentum resolution for a wide range of particle momenta from about 8 GeV/c down to a few 100 MeV/c, together with particle identification in the momentum region below about 1 GeV/c by measuring the specific energy-loss. A new technique, based on self-supporting straw double layers with intrinsic wire tension developed for the COSY-TOF straw tracker [2], has been adopted for the PANDA trackers. The development of the readout electronics for the straw tubes is ongoing. Prototypes have been produced and used to instrument straw tube modules that have been tested with cosmic rays and proton beams. Design issues of the PANDA straw tubes, together with the results of the prototype tests are presented.

  6. A systematic study of the strong interaction with PANDA

    NARCIS (Netherlands)

    Messchendorp, J. G.; Hosaka, A; Khemchandani, K; Nagahiro, H; Nawa, K

    2011-01-01

    The theory of Quantum Chromo Dynamics (QCD) reproduces the strong interaction at distances much shorter than the size of the nucleon. At larger distance scales, the generation of hadron masses and confinement cannot yet be derived from first principles on basis of QCD. The PANDA experiment at FAIR

  7. ESBWR related passive decay heat removal tests in PANDA

    International Nuclear Information System (INIS)

    Huggenberger, M.; Aubert, C.; Bandurski, T.; Dreier, J.; Fischer, O.; Strassberger, H.J.; Yadigaroglu, G.

    1999-01-01

    A number of test series to investigate passive safety systems for the next generation of Light Water Reactors have been performed in the PANDA multi-purpose facility at the Paul Scherrer Institut (PSI). The large scale thermal-hydraulic test facility allows to investigate LWR containment phenomena and system behaviour. PANDA was first used to examine the Passive Containment Cooling System (PCCS) for the Simplified Boiling Water Reactor (SBWR). In 1996 new test series were initiated; all related to projects of the EC Fourth Framework Programme on Nuclear Fission Safety. One of these projects (TEPSS) is focused on the European Simplified Boiling Water Reactor (ESBWR). The ESBWR containment features and PCCS long-term post LOCA response were investigated in PANDA. The PCCS start-up was demonstrated, the effect of nitrogen hidden somewhere in the drywell and released later in the transient was simulated and the effect of light gases (helium) on the PCCS performance was investigated. Finally, the influence of low PCC pool levels on PCCS and containment performance was examined. The main findings were that the PCCS works as intended and shows generally a favorable and robust long-term post LOCA behaviour. The system starts working even under extreme conditions and trapped air released from the drywell later in the transient does only temporarily reduce the PCCS performance. The new PANDA test series provided an extensive data base which will contribute to further improve containment design of passive plants and allow for system code assessment in a wide parameter range. (author)

  8. Double {Lambda}-hypernuclei at the PANDA experiment

    Energy Technology Data Exchange (ETDEWEB)

    Sanchez Lorente, Alicia, E-mail: a.sanchez@gsi.de [Helmholtz Institut Mainz (Germany); Collaboration: P-bar ANDA Collaboration

    2012-12-15

    Hypernuclear research will be one of the main topics addressed by the PANDA experiment at the planned Facility for Antiproton and Ion Research FAIR at Darmstadt (Germany). Thanks to the use of stored p-bar beams, copious production of double {Lambda} hypernuclei is expected at the PANDA experiment, which will enable high precision {gamma} spectroscopy of such nuclei for the first time. At PANDA excited states of {Xi}{sup }- hypernuclei will be used as a starting point for the formation of double {Lambda} hypernuclei. In order to predict the yield of particle stable double hypernuclei a microcanonical decay model was developed. For the detection of these nuclei, a devoted hypernuclear detector setup is planned. This set-up consists, in addition to the general purpose of the PANDA set-up, of a primary nuclear target for the production of {Xi}{sup -} + {Xi}-bar pairs, a secondary active target for the hypernuclei formation and the identification of associated decay products and a germanium array detector to perform {gamma} spectroscopy. Furthermore, the presence of {Xi}-bar can be used as an alternative to tag the strangeness in the {Xi}{sup -} + {Xi}-bar. All systems need to operate in the presence of a high magnetic field and a large hadronic background. In the present talk details concerning simulations, the identification procedure of double hypernuclei and the suppression of background will be presented. In addition, the present status of the detector developments for this programme will be briefly given.

  9. Integration of Panda Workload Management System with supercomputers

    Science.gov (United States)

    De, K.; Jha, S.; Klimentov, A.; Maeno, T.; Mashinistov, R.; Nilsson, P.; Novikov, A.; Oleynik, D.; Panitkin, S.; Poyda, A.; Read, K. F.; Ryabinkin, E.; Teslyuk, A.; Velikhov, V.; Wells, J. C.; Wenaus, T.

    2016-09-01

    The Large Hadron Collider (LHC), operating at the international CERN Laboratory in Geneva, Switzerland, is leading Big Data driven scientific explorations. Experiments at the LHC explore the fundamental nature of matter and the basic forces that shape our universe, and were recently credited for the discovery of a Higgs boson. ATLAS, one of the largest collaborations ever assembled in the sciences, is at the forefront of research at the LHC. To address an unprecedented multi-petabyte data processing challenge, the ATLAS experiment is relying on a heterogeneous distributed computational infrastructure. The ATLAS experiment uses PanDA (Production and Data Analysis) Workload Management System for managing the workflow for all data processing on over 140 data centers. Through PanDA, ATLAS physicists see a single computing facility that enables rapid scientific breakthroughs for the experiment, even though the data centers are physically scattered all over the world. While PanDA currently uses more than 250000 cores with a peak performance of 0.3+ petaFLOPS, next LHC data taking runs will require more resources than Grid computing can possibly provide. To alleviate these challenges, LHC experiments are engaged in an ambitious program to expand the current computing model to include additional resources such as the opportunistic use of supercomputers. We will describe a project aimed at integration of PanDA WMS with supercomputers in United States, Europe and Russia (in particular with Titan supercomputer at Oak Ridge Leadership Computing Facility (OLCF), Supercomputer at the National Research Center "Kurchatov Institute", IT4 in Ostrava, and others). The current approach utilizes a modified PanDA pilot framework for job submission to the supercomputers batch queues and local data management, with light-weight MPI wrappers to run singlethreaded workloads in parallel on Titan's multi-core worker nodes. This implementation was tested with a variety of Monte-Carlo workloads

  10. Coupled human and natural systems approach to wildlife research and conservation

    Directory of Open Access Journals (Sweden)

    Neil H. Carter

    2014-09-01

    Full Text Available Conserving wildlife while simultaneously meeting the resource needs of a growing human population is a major sustainability challenge. As such, using combined social and environmental perspectives to understand how people and wildlife are interlinked, together with the mechanisms that may weaken or strengthen those linkages, is of utmost importance. However, such integrated information is lacking. To help fill this information gap, we describe an integrated coupled human and natural systems (CHANS approach for analyzing the patterns, causes, and consequences of changes in wildlife population and habitat, human population and land use, and their interactions. Using this approach, we synthesize research in two sites, Wolong Nature Reserve in China and Chitwan National Park in Nepal, to explicate key relationships between people and two globally endangered wildlife conservation icons, the giant panda and the Bengal tiger. This synthesis reveals that local resident characteristics such as household socioeconomics and demography, as well as community-level attributes such as resource management organizations, affect wildlife and their habitats in complex and even countervailing ways. Human impacts on wildlife and their habitats are in turn modifying the suite of ecosystem services that they provide to local residents in both sites, including access to forest products and cultural values. These interactions are further complicated by human and natural disturbance (e.g., civil wars, earthquakes, feedbacks (including policies, and telecouplings (socioeconomic and environmental interactions over distances that increasingly link the focal systems with other distant systems. We highlight several important implications of using a CHANS approach for wildlife research and conservation that is useful not only in China and Nepal but in many other places around the world facing similar challenges.

  11. Evolution of the ATLAS PanDA Workload Management System for Exascale Computational Science

    OpenAIRE

    Maeno, T; De, K; Klimentov, A; Nilsson, P; Oleynik, D; Panitkin, S; Petrosyan, A; Schovancova, J; Vaniachine, A; Wenaus, T; Yu, D

    2013-01-01

    An important foundation underlying the impressive success of data processing and analysis in the ATLAS experiment [1] at the LHC [2] is the Production and Distributed Analysis (PanDA) workload management system [3]. PanDA was designed specifically for ATLAS and proved to be highly successful in meeting all the distributed computing needs of the experiment. However, the core design of PanDA is not experiment specific. The PanDA workload management system is capable of meeting the needs of othe...

  12. Face of the giant panda sign in Wilson disease | Chakraborty | SA ...

    African Journals Online (AJOL)

    SA Journal of Radiology. Journal Home · ABOUT THIS JOURNAL · Advanced Search · Current Issue · Archives · Journal Home > Vol 17, No 3 (2013) >. Log in or Register to get access to full text downloads. Username, Password, Remember me, or Register · Download this PDF file. The PDF file you selected should load ...

  13. Building Phylogenetic Trees from DNA Sequence Data: Investigating Polar Bear and Giant Panda Ancestry.

    Science.gov (United States)

    Maier, Caroline Alexandra

    2001-01-01

    Presents an activity in which students seek answers to questions about evolutionary relationships by using genetic databases and bioinformatics software. Students build genetic distance matrices and phylogenetic trees based on molecular sequence data using web-based resources. Provides a flowchart of steps involved in accessing, retrieving, and…

  14. Nanodielectrics with giant permittivity

    Indian Academy of Sciences (India)

    Following the prediction, during the last couple of years we have investigated the effect of giant permittivity in one-dimensional systems of conventional metals and conjugated polymer chains. In this article, we have tried to summarize the works on giant permittivity and finally the fabrication of nanocapacitor using metal ...

  15. Testbeam results of the PANDA endcap disc dirc

    Energy Technology Data Exchange (ETDEWEB)

    Etzelmueller, Erik; Biguenko, Klim; Dueren, Michael; Hayrapetyan, Avetik; Rieke, Julian; Schmidt, Mustafa [II. Physikalisches Institut, Justus-Liebig-Universitaet, Giessen (Germany); Collaboration: PANDA-Collaboration

    2016-07-01

    The physics program of the PANDA detector at the future FAIR facility at GSI requires excellent particle identification. For the PANDA forward endcap region a novel detector type called ''Disc DIRC'' has been designed. It covers the angular range between 5 and 22 degrees and uses internally reflected Cherenkov light in order to separate pions, kaons and protons up to a momentum of 4 GeV/c. A new prototype was tested at the PS East Area at CERN in May 2015. For the first time all optical components consisted of fused silica and different MCP-PMT sensors were used for the photon detection. A summary of the analysis will be presented along with results from in-house tests for the individual components.

  16. Tests and developments of the PANDA Endcap Disc DIRC

    International Nuclear Information System (INIS)

    Etzelmüller, E.; Belias, A.; Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Kalicy, G.; Krebs, M.; Lehmann, D.; Nerling, F.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwarz, C.; Schwiening, J.; Traxler, M.; Zühlsdorf, M.; Britting, A.; Eyrich, W.; Lehmann, A.

    2016-01-01

    The PANDA experiment at the future Facility for Antiproton and Ion Research (FAIR) requires excellent particle identification. Two different DIRC detectors will utilize internally reflected Cherenkov light of charged particles to enable the separation of pions and kaons up to momenta of 4 GeV/c. The Endcap Disc DIRC will be placed in the forward endcap of PANDA's central spectrometer covering polar angles between 5° and 22°. Its final design is based on MCP-PMTs for the photon detection and an optical system made of fused silica. A new prototype has been investigated during a test beam at CERN in May 2015 and first results will be presented. In addition a new synthetic fused silica material by Nikon has been tested and was found to be radiation hard.

  17. Superconducting shielding for a polarized target in PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Mora Espi, Maria Carmen; Froehlich, Bertold; Dbeyssi, Alaa; Aguar Bartolome, Patricia; Gerz, Kathrin; Ahmed, Samer; Wang, Yadi; Lin, Dexu; Feldbauer, Florian [Helmholtz-Institut Mainz (Germany); Penuelas, Ana [Universitat de Valencia (Spain); Collaboration: PANDA-Collaboration

    2016-07-01

    The measurement of the phase between the electric and the magnetic form factors of the proton can be measured using a polarized interaction. A feasible possibility to allow this kind of reactions would be to develop a transversely polarized proton target to be used in the PANDA experiment. The first step to achieve the transverse target polarization is to study the feasibility of shielding the target region from the external 2 T longitudinal magnetic field generated by the PANDA solenoid. BSCOO-2212, a new high-temperature superconductor material, has been identified as a possible candidate to be used for shielding this external magnetic field. Tests at 4 K have taken place in the Helmholtz Institute Mainz with this material, and the first preliminary results are shown here.

  18. Feasibility study of a transversely polarized target in PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Ahmadi, Heybat; Deiseroth, Malte; Khaneft, Dmitry; Noll, Oliver; Valente, Roserio; Zambrana, Manuel [Helmholtz-Institut Mainz (Germany); Johannes Gutenberg-Universitaet Mainz (Germany); Ahmed, Samer [Helmholtz-Institut Mainz (Germany); Capozza, Luigi; Dbeyssi, Alaa; Froehlich, Bertold; Lin, Dexu; Maas, Frank; Mora Espi, Maria Carmen; Morales Morales, Cristina; Rodriguez Pineiro, David; Zimmermann, Iris [Helmholtz-Institut Mainz (Germany); GSI Helmholtzzentrum fuer Schwerionenforschung GmbH (Germany)

    2015-07-01

    The PANDA (Antiproton Annihilation at Darmstadt) spectrometer, located at the Facility for Antiproton and Ion Research (FAIR), is an excellent tool for exploring the nucleon structure. An unpolarized target allows the determination of the electromagnetic time-like form factor of the proton. An additional experiment in which the target is transversely polarized is necessary for the first-time extraction of their imaginary part. A transverse polarization requires the shielding of the 2 T longitudinal field from the PANDA-Solenoid at the target volume and an additional transverse holding field. We present results from our first experiment at the Institut fuer Kernphysik in Mainz on intense magnetic flux shielding using a BSCCO (bismuth strontium calcium copper oxide) thin-wall hollow cylinder at 4.2 K and a 1.4 T external magnetic field and compare this to numerical calculations.

  19. FPGA based compute nodes for high level triggering in PANDA

    International Nuclear Information System (INIS)

    Kuehn, W; Gilardi, C; Kirschner, D; Lang, J; Lange, S; Liu, M; Perez, T; Yang, S; Schmitt, L; Jin, D; Li, L; Liu, Z; Lu, Y; Wang, Q; Wei, S; Xu, H; Zhao, D; Korcyl, K; Otwinowski, J T; Salabura, P

    2008-01-01

    PANDA is a new universal detector for antiproton physics at the HESR facility at FAIR/GSI. The PANDA data acquisition system has to handle interaction rates of the order of 10 7 /s and data rates of several 100 Gb/s. FPGA based compute nodes with multi-Gb/s bandwidth capability using the ATCA architecture are designed to handle tasks such as event building, feature extraction and high level trigger processing. Data connectivity is provided via optical links as well as multiple Gb Ethernet ports. The boards will support trigger algorithms such us pattern recognition for RICH detectors, EM shower analysis, fast tracking algorithms and global event characterization. Besides VHDL, high level C-like hardware description languages will be considered to implement the firmware

  20. Development of a GEM-based TPC for PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Hoeppner, Christian; Ketzer, Bernhard; Konorov, Igor; Mann, Alexander; Neubert, Sebastian; Paul, Stephan; Weitzel, Quirin; Woerner, Lisa [Technische Universitaet Muenchen, Physik Department E18, 85748 Garching (Germany)

    2008-07-01

    A TPC is considered as the central tracker of the PANDA experiment, which is currently being planned at the new accelerator complex FAIR at Darmstadt. PANDA is designed as an internal target experiment at the antiproton storage ring HESR. The central tracker has to measure particle trajectories over a wide momentum range (0.1-8 GeV/c) from up to 2.10{sup 7} antiproton-proton annihilations/s. The continuous nature of the antiproton beam makes the use of a traditional ion gate impractical. Owing to their intrinsic ion suppression properties, GEM foils are planned as the amplification stage. A small prototype of this GEM-TPC (diameter 200 mm, drift length 77 mm) has been built and characterized with cosmic muons. Results such as spatial resolution, cluster distributions, and diffusion properties are presented in this talk.

  1. Test of a PCIe based readout option for PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Reiter, Simon; Lange, Soeren; Kuehn, Wolfgang [Justus-Liebig-Universitaet Giessen (Germany); Engel, Heiko [Goethe-Universitaet Frankfurt (Germany); Collaboration: PANDA-Collaboration

    2016-07-01

    The future PANDA detector will achieve an event rate at about 20 MHz resulting in a high data load of up to 200 GB/s. The data acquisition system will be based on a triggerless readout concept, leading to the requirement of large data bandwidths. The data reduction will be guaranteed on the first level by an array of FPGAs running a full on-line reconstruction followed by the second level of a CPU/GPU cluster to achieve a reduction factor more than 1000. The C-RORC (Common Readout Receiver Card), originally developed for ALICE, provides on the one hand 12 optical links with 6.25 Gbps each, and on the other hand a PCIe interface with up to 40 Gbps. The receiver card has been installed and tested, and the firmware has been adjusted for the Panda data format. Test results are presented.

  2. Technical Design Report for the: PANDA Straw Tube Tracker

    CERN Document Server

    Erni, W; Krusche, B; Steinacher, M; Heng, Y; Liu, Z; Liu, H; Shen, X; Wang, Q; Xu, H; Aab, A; Albrecht, M; Becker, J; Csapó, A; Feldbauer, F; Fink, M; Friedel, P; Heinsius, F H; Held, T; Klask, L; Koch, H; Kopf, B; Leiber, S; Leyhe, M; Motzko, C; Pelizäus, M; Pychy, J; Roth, B; Schröder, T; Schulze, J; Sowa, C; Steinke, M; Trifterer, T; Wiedner, U; Zhong, J; Beck, R; Bianco, S; Brinkmann, K T; Hammann, C; Hinterberger, F; Kaiser, D; Kliemt, R; Kube, M; Pitka, A; Quagli, T; Schmidt, C; Schmitz, R; Schnell, R; Thoma, U; Vlasov, P; Walther, D; Wendel, C; Würschig, T; Zaunick, H G; Bianconi, A; Bragadireanu, M; Caprini, M; Pantea, D; Pantelica, D; Pietreanu, D; Serbina, L; Tarta, P D; Kaplan, D; Fiutowski, T; Idzik, M; Mindur, B; Przyborowski, D; Swientek, K; Czech, B; Kistryn, M; Kliczewski, S; Kozela, A; Kulessa, P; Lebiedowicz, P; Pysz, K; Schäfer, W; Siudak, R; Szczurek\\inst, A; Jowzaee, S; Kajetanowicz, M; Kamys, B; Kistryn, S; Korcyl, G; Korcyl, K; Krzemien, W; Magiera, A; Moskal, P; Palka, M; Rudy, Z; Salabura, P; Smyrski, J; Wrońska\\inst, A; Al-Turany, M; Arora, R; Augustin, I; Deppe, H; Flemming, H; Gerhardt, A; Götzen, K; Jordi, A F; Kalicy, G; Karabowicz, R; Lehmann, D; Lewandowski, B; Lühning, J; Maas, F; Orth, H; Patsyuk, M; Peters, K; Saito, T; Schepers, G; Schmidt, C J; Schmitt, L; Schwarz, C; Schwiening, J; Traxler, M; Voss, B; Wieczorek, P; Wilms, A; Zühlsdorf\\inst, M; Abazov, V M; Alexeev, G; Arefiev, A; Astakhov, V I; Barabanov, M Yu; Batyunya, B V; Davydov, Yu I; Dodokhov, V Kh; Efremov, A A; Fedunov, A G; Festchenko, A A; Galoyan, A S; Grigoryan, S; Karmokov, A; Koshurnikov, E K; Lobanov, V I; Lobanov, Yu Yu; Makarov, A F; Malinina, L V; Malyshev, V L; Mustafaev, G A; Olshevskiy, A; Pasyuk, M A; Perevalova, E A; Piskun, A A; Pocheptsov, T A; Pontecorvo, G; Rodionov, V K; Rogov, Yu N; Salmin, R A; Samartsev, A G; Sapozhnikov, M G; Shabratova, G S; Skachkova, A N; Skachkov, N B; Strokovsky, E A; Suleimanov, M K; Teshev, R Sh; Tokmenin, V V; Uzhinsky, V V; Vodopyanov, A S; Zaporozhets, S A; Zhuravlev, N I; Zorin, A G; Branford, D; Glazier, D; Watts, D; Woods, P; Britting, A; Eyrich, W; Lehmann, A; Uhlig, F; Dobbs, S; Metreveli, Z; Seth, K; Tomaradze, A; Xiao, T; Bettoni, D; Carassiti, V; Ramusino, A Cotta; Dalpiaz, P; Drago, A; Fioravanti, E; Garzia, I; Savriè, M; Stancari, G; Bianchi, N; Gianotti, P; Guaraldo, C; Lucherini, V; Orecchini, D; Pace, E; Bersani, A; Bracco, G; Macri, M; Parodi, R F; Bremer, D; Dormenev, V; Drexler, P; Düren, M; Eissner, T; Föhl, K; Galuska, M; Gessler, T; Hayrapetyan, A; Hu, J; Koch, P; Kröck, B; Kühn, W; Lange, S; Liang, Y; Merle, O; Metag, V; Moritz, M; Münchow, D; Nanova, M; Novotny, R; Spruck, B; Stenzel, H; Ullrich, T; Werner, M; Xu, H; Euan, C; Hoek, M; Ireland, D; Keri, T; Montgomery, R; Protopopescu, D; Rosner, G; Seitz, B; Babai, M; Glazenborg-Kluttig, A; Kavatsyuk, M; Lemmens, P; Lindemulder, M; Löhner, H; Messchendorp, J; Moeini, H; Schakel, P; Schreuder, F; Smit, H; Tambave, G; Weele, J C van der; Veenstra\\inst, R; Sohlbach, H; Büscher, M; Deermann, D; Dosdall, R; Esch, S; Gillitzer, A; Goldenbaum, F; Grunwald, D; Henssler, S; Herten, A; Hu, Q; Kemmerling, G; Kleines, H; Kozlov, V; Lehrach, A; Maier, R; Mertens, M; Ohm, H; Orfanitski, S; Prasuhn, D; Randriamalala, T; Ritman, J; Schadmand, S; Serdyuk, V; Sterzenbach, G; Stockmanns, T; Wintz, P; Wüstner, P; Xu, H; Kisiel, J; Li, S; Li, Z; Sun, Z; Xu, H; Rigato, V; Fissum, S; Hansen, K; Isaksson, L; Lundin, M; Schröder, B; Achenbach, P; Bleser, S; Cahit, U; Cardinali, M; Denig, A; Distler, M; Fritsch, M; Kangh, D; Karavdina, A; Lauth, W; Merkel, H; Michel, M; Espi, M C Mora; Müller, U; Pochodzalla, J; Prometeusz, J; Sanchez, S; Sanchez-Lorente, A; Schlimme, S; Sfienti, C; Weber\\inst, M Thiel T; Dormenev, V I; Fedorov, A A; Korzhik, M V; Missevitch, O V; Balanutsa, V; Chernetsky, V; Demekhin, A; Dolgolenko, A; Fedorets, P; Gerasimov, A; Goryachev, V; Varentsov, V; Boukharov, A; Malyshev, O; Marishev, I; Semenov, A; Böhmer, F; Dørheim, S; Ketzer, B; Paul, S; Hergemöller, A K; Khoukaz, A; Köhler, E; Täschner, A; Wessels, J; Varma, R; Chaterjee, A; Jha, V; Kailas, S; Roy, B; Yan, Y; Chinorat, K; Khanchai, K; Ayut, L; Pomrad, S; Baldin, E; Kotov, K; Peleganchuk, S; Tikhonov, Yu; Boucher, J; Chambert, V; Dbeyssi, A; Hennino, T; Imre, M; Kunne, R; Galliard, C Le; Ma, B; Marchand, D; Maroni, A; Ong, S; Ramstein, B; Rosier, P; Sudol, M; Tomasi-Gustafsson, E; Wiele, J Van de; Boca, G; Braghieri, A; Costanza, S; Genova, P; Lavezzi, L; Montagna, P; Rotondi, A; Abramov, V; Belikov, N; Davidenko, A; Derevschikov, A; Goncharenko, Y; Grishin, V; Kachanov, V; Konstantinov, D; Kormilitsin, V; Melnik, Y; Levin, A; Minaev, N; Mochalov, V; Morozov, D; Nogach, L; Poslavskiy, S; Ryazantsev, A; Ryzhikov, S; Semenov, P; Shein, I; Uzunian, A; Vasiliev, A; Yakutin, A; Bäck, T; Cederwall, B; Makónyi, K; Tegnér, P E; Würtemberg, K M von; Belostotski, S; Gavrilov, G; Itzotov, A; Kashchuk, A; Kisselev, A; Kravchenko, P; Levitskaya, O; Manaenkov, S; Miklukho, O; Naryshkin, Y; Veretennikov, D; Vikhrov, V; Zhadanov, A; Alberto, D; Amoroso, A; Bussa, M P; Busso, L; Mori, F De; Destefanis, M; Fava, L; Ferrero, L; Greco, M; Maggiora, M; Marcello, S; Sosio, S; Spataro, S; Zotti, L; Calvo, D; Coli, S; Remigis, P De; Filippi, A; Giraudo, G; Lusso, S; Mazza, G; Morra, O; Rivetti, A; Wheadon, R; Iazzi, F; Lavagno, A; Younis, H; Birsa, R; Bradamante, F; Bressan, A; Martin, A; Clement, H; Galander, B; Balkestal, L Caldeira; Calén, H; Fransson, K; Johansson, T; Kupsc, A; Marciniewski, P; Thomé, E; Wolke, M; Zlomanczuk, J; Díaz, J; Ortiz, A; Dmowski, K; Korzeniewski, R; Przemyslaw, D; Slowinski, B; Chlopik, A; Guzik, Z; Kosinski, K; Melnychuk, D; Wasilewski, A; Wojciechowski, M; Wronka, S; Wysocka, A; Zwieglinski, B; Bühler, P; Hartman, O; Kienle, P; Marton, J; Suzuki, K; Widmann, E; Zmeskal, J

    2012-01-01

    This document describes the technical layout and the expected performance of the Straw Tube Tracker (STT), the main tracking detector of the PANDA target spectrometer. The STT encloses a Micro-Vertex-Detector (MVD) for the inner tracking and is followed in beam direction by a set of GEM-stations. The tasks of the STT are the measurement of the particle momentum from the reconstructed trajectory and the measurement of the specific energy-loss for a particle identification. Dedicated simulations with full analysis studies of certain proton-antiproton reactions, identified as being benchmark tests for the whole \\Panda scientific program, have been performed to test the STT layout and performance. The results are presented, and the time lines to construct the STT are described.

  3. The primary target for the hypernuclear experiment at PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Bleser, Sebastian; Martinez Rojo, Marta; Sanchez Lorente, Alicia; Steinen, Marcell [Helmholtz-Institut Mainz (Germany); Iazzi, Felice [INFN, Torino (Italy); Politecnico di Torino (Italy); Pochodzalla, Josef [Helmholtz-Institut Mainz (Germany); Institut fuer Kernphysik, JGU Mainz (Germany); Rausch, Nicolas [Institut fuer Kernphysik, JGU Mainz (Germany); Collaboration: PANDA-Collaboration

    2016-07-01

    A key aspect of the PANDA experiment at the future FAIR facility is the production and spectroscopy of ΛΛ hypernuclei. The double hypernuclei are produced in a two-stage target system consisting of a primary in-beam filament to produce low momentum Ξ{sup -} hyperons which are stopped and converted into two Λ hyperons in a secondary external target. A system of piezo motors will be used to steer the primary target in two dimensions. This allows to achieve a constant luminosity by adjusting the position and provides the replacement of eventually broken target wires. The poster shows the mechanical integration of this system within the vacuum chamber attached to the beampipe. Its motion is controlled using the EPICS framework as planned for PANDA. In addition the results of radiation tests with foreseen target wires are presented.

  4. Giant Bilateral Juvenile Fibroadenoma of the Breast in Prepubescent Girl.

    Science.gov (United States)

    Khan, Salma; Khan, Momna; Rafique, Sadia

    2015-10-01

    Juvenile fibroadenoma accounts for 4% of the total fibroadenomas. Giant juvenile fibroadenoma is found in only 0.5% of all fibroadenomas. The authors report a 10-year girl presenting with progressive enlargement of both breasts for one year. Based on clinical findings and Fine Needle Aspiration Cytology (FNAC), a diagnosis of bilateral giant juvenile fibroadenomas of breast was made. She underwent bilateral lumpectomy with breast conservation and made uneventful postoperative recovery.

  5. Development of a cluster-jet target for PANDA

    International Nuclear Information System (INIS)

    Gruber, A.; Marton, J.; Widmann, E.; Zmeskal, J.; Orth, H.; Luehning, J.

    2008-01-01

    Full text: The Stefan Meyer Institut (SMI) is part of the international PANDA collaboration. The universal detector will be constructed at the future high-energy antiproton storage ring HESR at FAIR (Facility for Antiproton and Ion Research, GSI/Darmstadt). PANDA will use antiproton beams (1.5 to 15 GeV/c) for hadron physics in the charmonium region. The physics program of PANDA will encompass charmonium spectroscopy below and above open charm threshold, search for exotics (glueballs, hybrids), lambda and double-lambda hypernuclei studies and the investigation of in-medium modifications of charmed mesons - an experimentally unexplored field. SMI contributes to major parts of the PANDA detector like the hydrogen cluster-jet target and the vacuum system of the antiproton - target interaction zone. In order to reach the desired target density, an optimization of the cold head, the nozzle and the skimmer arrangement is essential. A density-profile monitor for the cluster-jet was designed and built at SMI. Several nozzle types will be studied using different gases, temperatures and inlet pressures. Additionally we, together with the cluster-jet target group at GSI, are carrying out R and D for improving the jet-density. The Genova/Fermilab cluster-jet target used for these measurements has been in use at Fermilab for the experiments E760 and E835 and has been transferred to GSI for this purpose. The setup of the density-profile monitor at SMI and several measurements at GSI will be presented. (author)

  6. The PANDA detector and its physics program at FAIR

    International Nuclear Information System (INIS)

    Brinkmann, K.

    2005-01-01

    The PANDA detector will make use of the antiprotons produced in the FAIR complex and stored in the High-Energy Storage Ring HESR for the study of strong interactions in antiproton collisions with protons and heavy targets. The detector features a 4π design for charged particles with a solenoidal magnetic field and full coverage of photons by means of an advanced electromagnetic calorimeter. In addition, a dipole spectrometer will allow high-resolution detection of leading particles characteristic for fixed-target experiments. The physics program of PANDA covers a wide range of topics which address central issues of QCD at low and moderate energies. Spectroscopy of hidden charm in the ccbar level scheme is still a very interesting issue, in particular when states are involved which cannot directly be formed in e + e - reactions. Open charm in the D meson section has recently received renewed interest when states were discovered that are not easily explained in conventional qqbar models. Exotic hadrons and glueballs have been predicted by theory within the energy range covered by PANDA. The search for these and the eventual study of their properties is central to the physics program. Using heavy targets, PANDA intends to study the properties of charm quarks in the hadronic medium. The copious production of baryon-antibaryon pairs at HESR will allow studies using secondary targets for the formation of hypernuclei. Each of these physics topics will be touched while the detector properties needed in order to cover the broad physics program are described. Technical developments and the status of the various detector components will be summarized

  7. Gastric Dilitation-Volvulus in a Red Panda (Ailurus fulgens)

    OpenAIRE

    SCHLANSER, Justin R.; AGNEW, Dalen; PAPERD, Deborah W.; HARRISON, Tara M.

    2014-01-01

    ABSTRACT A 10-year-old male red panda presented acutely with symptoms of shock due to acute abdominal distress and respiratory compromise. Abdominal ultrasound confirmed a severely distended stomach for which passage of an orogastric tube for relief was unsuccessful. Intra-operatively, the stomach was found to be distended and torsed around its long axis supporting the diagnosis of Gastric dilitation-volvulus (GDV). The animal arrested and died intra-operatively and was submitted for necropsy...

  8. Improving Security in the ATLAS PanDA System

    International Nuclear Information System (INIS)

    Caballero, J; Maeno, T; Potekhin, M; Wenaus, T; Nilsson, P; Stewart, G

    2011-01-01

    The security challenges faced by users of the grid are considerably different to those faced in previous environments. The adoption of pilot jobs systems by LHC experiments has mitigated many of the problems associated with the inhomogeneities found on the grid and has greatly improved job reliability; however, pilot jobs systems themselves must then address many security issues, including the execution of multiple users' code under a common 'grid' identity. In this paper we describe the improvements and evolution of the security model in the ATLAS PanDA (Production and Distributed Analysis) system. We describe the security in the PanDA server which is in place to ensure that only authorized members of the VO are allowed to submit work into the system and that jobs are properly audited and monitored. We discuss the security in place between the pilot code itself and the PanDA server, ensuring that only properly authenticated workload is delivered to the pilot for execution. When the code to be executed is from a 'normal' ATLAS user, as opposed to the production system or other privileged actor, then the pilot may use an EGEE developed identity switching tool called gLExec. This changes the grid proxy available to the job and also switches the UNIX user identity to protect the privileges of the pilot code proxy. We describe the problems in using this system and how they are overcome. Finally, we discuss security drills which have been run using PanDA and show how these improved our operational security procedures.

  9. Technical Design Report for the: PANDA Micro Vertex Detector

    CERN Document Server

    Erni, W; Krusche, B; Steinacher, M; Heng, Y; Liu, Z; Liu, H; Shen, X; Wang, Q; Xu, H; Albrecht, M; Becker, J; Eickel, K; Feldbauer, F; Fink, M; Friedel, P; Heinsius, F H; Held, T; Koch, H; Kopf, B; Leyhe, M; Motzko, C; Pelizäus, M; Pychy, J; Roth, B; Schröder, T; Schulze, J; Steinke, M; Trifterer, T; Wiedner, U; Zhong, J; Beck, R; Becker, M; Bianco, S; Brinkmann, K -Th; Hammann, C; Hinterberger, F; Jäkel, R; Kaiser, D; Kliemt, R; Koop, K; Schmidt, C; Schnell, R; Thoma, U; Vlasov, P; Wendel, C; Winnebeck, A; Würschig, Th; Zaunick, H -G; Bianconi, A; Bragadireanu, M; Caprini, M; Ciubancan, M; Pantea, D; Tarta, P -D; De Napoli, M; Giacoppo, F; Rapisarda, E; Sfienti, C; Fiutowski, T; Idzik, N; Mindur, B; Przyborowski, D; Swientek, K; Bialkowski, E; Budzanowski, A; Czech, B; Kliczewski, S; Kozela, A; Kulessa, P; Lebiedowicz, P; Malgorzata, K; Pysz, K; Schäfer, W; Siudak, R; Szczurek, A; Brandys, P; Czyzewski, T; Czyzycki, W; Domagala, M; Hawryluk, M; Filo, G; Kwiatkowski, D; Lisowski, E; Lisowski, F; Bardan, W; Gil, D; Kamys, B; Kistryn, St; Korcyl, K; Krzemieñ, W; Magiera, A; Moskal, P; Rudy, Z; Salabura, P; Smyrski, J; Wroñska, A; Al-Turany, M; Arora, R; Augustin, I; Deppe, H; Dutta, D; Flemming, H; Götzen, K; Hohler, G; Karabowicz, R; Lehmann, D; Lewandowski, B; Lühning, J; Maas, F; Orth, H; Peters, K; Saito, T; Schepers, G; Schmidt, C J; Schmitt, L; Schwarz, C; Schwiening, J; Voss, B; Wieczorek, P; Wilms, A; Abazov, V M; Alexeev, G D; Arefiev, V A; Astakhov, V I; Barabanov, M Yu; Batyunya, B V; Davydov, Yu I; Dodokhov, V Kh; Efremov, A A; Fedunov, A G; Feshchenko, A A; Galoyan, A S; Grigoryan, S; Karmokov, A; Koshurnikov, E K; Lobanov, V I; Lobanov, Yu Yu; Makarov, A F; Malinina, L V; Malyshev, V L; Mustafaev, G A; Olshevski, A G; Pasyuk, M A; Perevalova, E A; Piskun, A A; Pocheptsov, T A; Pontecorvo, G; Rodionov, V K; Rogov, Yu N; Salmin, R A; Samartsev, A G; Sapozhnikov, M G; Shabratova, G S; Skachkova, A N; Skachkov, N B; Strokovsky, E A; Suleimanov, M K; Teshev, R Sh; Tokmenin, V V; Uzhinsky, V V; Vodopyanov, A S; Zaporozhets, S A; Zhuravlev, N I; Zorin, A G; Branford, D; Glazier, D; Watts, D; Woods, P; Britting, A; Eyrich, W; Lehmann, A; Uhlig, F; Dobbs, S; Metreveli, Z; Seth, K; Tann, B; Tomaradze, A; Bettoni, D; Carassiti, V; Dalpiaz, P; Drago, A; Fioravanti, E; Garzia, I; Negrini, M; Savriè, M; Stancari, G; Dulach, B; Gianotti, P; Guaraldo, C; Lucherini, V; Pace, E; Bersani, A; Macri, M; Marinelli, M; Parodi, R F; Dormenev, V; Drexler, P; Düren, M; Eisner, T; Foehl, K; Hayrapetyan, A; Koch, P; Krïoch, B; Kühn, W; Lange, S; Liang, Y; Liu, M; Merle, O; Metag, V; Moritz, M; Nanova, M; Novotny, R; Spruck, B; Stenzel, H; Strackbein, C; Thiel, M; Wang, Q; Clarkson, T; Euan, C; Hill, G; Hoek, M; Ireland, D; Kaiser, R; Keri, T; Lehmann, I; Livingston, K; Lumsden, P; MacGregor, D; McKinnon, B; Montgomery, R; Murray, M; Protopopescu, D; Rosner, G; Seitz, B; Yang, G; Babai, M; Biegun, A K; Glazenborg-Kluttig, A; Guliyev, E; Jothi, V S; Kavatsyuk, M; Lemmens, P; Löhner, H; Messchendorp, J; Poelman, T; Smit, H; van der Weele, J C; Sohlbach, H; Büscher, M; Dosdall, R; Dzhygadlo, R; Esch, S; Gillitzer, A; Goldenbaum, F; Grunwald, D; Jha, V; Kemmerling, G; Kleines, H; Lehrach, A; Maier, R; Mertens, M; Ohm, H; Pohl, D L; Prasuhn, D; Randriamalala, T; Ritman, J; Roeder, M; Sterzenbach, G; Stockmanns, T; Wintz, P; Wüstner, P; Xu, H; Kisiel, J; Li, S; Li, Z; Sun, Z; Xu, H; Fissum, K; Hansen, K; Isaksson, L; Lundin, M; Schröder, B; Achenbach, P; Denig, A; Distler, M; Fritsch, M; Kangh, D; Karavdina, A; Lauth, W; Michel, M; Espi, M C Mora; Pochodzalla, J; Sanchez, S; Sanchez-Lorente, A; Sfienti, C; Weber, T; Dormenev, V I; Fedorov, A A; Korzhik, M V; Missevitch, O V; Boukharov, A; Malyshev, O; Marishev, I; Semenov, A; Varma, R; Höppner, C; Ketzer, B; Konorov, I; Mann, A; Neubert, S; Paul, S; Vandenbroucke, M; Zhang, Q; Khoukaz, A; Rausmann, T; Täschner, A; Wessels, J; Baldin, E; Kotov, K; Peleganchuk, S; Tikhonov, Yu; Hennino, T; Imre, M; Kunne, R; Galliard, C Le; Normand, J P Le; Marchand, D; Maroni, A; Ong, S; Pouthas, J; Ramstein, B; Rosier, P; Sudol, M; Theneau, C; Tomasi-Gustafsson, E; Van de Wiele, J; Zerguerras, T; Boca, G; Braghieri, A; Costanza, S; Fontana, A; Genova, P; Lavezzi, L; Montagna, P; Rotondi, A; Buda, V; Abramov, V V; Davidenko, A M; Derevschikov, A A; Goncharenko, Y M; Grishin, V N; Kachanov, V A; Konstantinov, D A; Kormilitsin, V A; Matulenko, Y A; Melnik, Y M; Meschanin, A P; Minaev, N G; Mochalov, V V; Morozov, D A; Nogach, L V; Nurushev, S B; Ryazantsev, A V; Semenov, P A; Soloviev, L F; Uzunian, A V; Vasiliev, A N; Yakutin, A E; Belostotski, S; Gavrilov, G; Itzotov, A; Kisselev, A; Kravchenko, P; Manaenkov, S; Miklukho, O; Naryshkin, Y; Veretennikov, D; Vikhrov, V; Zhadanov, A; Bäck, T; Cederwall, B; Bargholtz, C; Gerén, L; Tegnér, P E; Thørngren, P; von Würtemberg, K M; Fava, L; Alberto, D; Amoroso, A; Bussa, M P; Busso, L; De Mori, F; Destefanis, M; Ferrero, L; Greco, M; Kugathasan, T; Maggiora, M; Marcello, S; Sosio, S; Spataro, S; Calvo, D; Coli, S; De Remigis, P; Filippi, A; Giraudo, G; Lusso, S; Mazza, G; Mignone, M; Rivetti, A; Wheadon, R; Zotti, L; Morra, O; Iazzi, F; Lavagno, A; Quarati, P; Szymanska, K; Birsa, R; Bradamante, F; Bressan, A; Martin, A; Clement, H; Galnander, B; Calén, H; Fransson, K; Johansson, T; Kupsc, A; Marciniewski, P; Thomé, E; Wolke, M; Zlomanczuk, J; Díaz, J; Ortiz, A; Buda, P; Dmowski, K; Korzeniewski, R; Przemyslaw, D; Slowinski, B; Borsuk, S; Chlopik, A; Guzik, Z; Kopec, J; Kozlowski, T; Melnychuk, D; Plominski, M; Szewinski, J; Traczyk, K; Zwieglinski, B; Bühler, P; Gruber, A; Kienle, P; Marton, J; Widmann, E; Zmeskal, J

    2012-01-01

    This document illustrates the technical layout and the expected performance of the Micro Vertex Detector (MVD) of the PANDA experiment. The MVD will detect charged particles as close as possible to the interaction zone. Design criteria and the optimisation process as well as the technical solutions chosen are discussed and the results of this process are subjected to extensive Monte Carlo physics studies. The route towards realisation of the detector is outlined.

  10. Formation of double-{Lambda} hypernuclei at PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Gaitanos, T., E-mail: Theodoros.Gaitanos@theo.physik.uni-giessen.de [Institut fuer Theoretische Physik, Universitaet Giessen, D-35392, Giessen (Germany); Larionov, A.B.; Lenske, H.; Mosel, U. [Institut fuer Theoretische Physik, Universitaet Giessen, D-35392, Giessen (Germany)

    2012-05-01

    We study the formation of single- and double-{Lambda} hypernuclei in antiproton-induced reactions relevant for the forthcoming PANDA experiment at FAIR. We use the Giessen Boltzmann-Uehling-Uhlenbeck (GiBUU) transport model with relativistic mean-fields for the description of non-equilibrium dynamics and the statistical multifragmentation model (SMM) for fragment formation. This combined approach describes the dynamical properties of strangeness and fragments in low energy p{sup Macron}-induced reactions fairly well. We then focus on the formation of double-{Lambda} hypernuclei in high energy p{sup Macron}-nucleus collisions on a primary target including the complementary {Xi}-induced reactions to a secondary one, as proposed by the PANDA Collaboration. Our results show that a copious production of double-{Lambda} hyperfragments is possible at PANDA. In particular, we provide first theoretical estimations on the double-{Lambda} production cross section, which strongly rises with decreasing energy of the secondary {Xi}-beam.

  11. ATLAS WORLD-cloud and networking in PanDA

    Science.gov (United States)

    Barreiro Megino, F.; De, K.; Di Girolamo, A.; Maeno, T.; Walker, R.; ATLAS Collaboration

    2017-10-01

    The ATLAS computing model was originally designed as static clouds (usually national or geographical groupings of sites) around the Tier 1 centres, which confined tasks and most of the data traffic. Since those early days, the sites’ network bandwidth has increased at 0(1000) and the difference in functionalities between Tier 1s and Tier 2s has reduced. After years of manual, intermediate solutions, we have now ramped up to full usage of World-cloud, the latest step in the PanDA Workload Management System to increase resource utilization on the ATLAS Grid, for all workflows (MC production, data (re)processing, etc.). We have based the development on two new site concepts. Nuclei sites are the Tier 1s and large Tier 2s, where tasks will be assigned and the output aggregated, and satellites are the sites that will execute the jobs and send the output to their nucleus. PanDA dynamically pairs nuclei and satellite sites for each task based on the input data availability, capability matching, site load and network connectivity. This contribution will introduce the conceptual changes for World-cloud, the development necessary in PanDA, an insight into the network model and the first half-year of operational experience.

  12. Improvements for PanDA and intermediate layers

    Energy Technology Data Exchange (ETDEWEB)

    Kawamura, Gen; Magradze, Erekle; Musheghyan, Haykuhi; Nadal, Jordi; Quadt, Arnulf; Rzehorz, Gerhard [II. Physikalisches Institut, Georg-August-Universitaet Goettingen (Germany)

    2015-07-01

    The PanDA Production and Distributed Analysis system is handling the ATLAS workload management for production and distributed analysis processing. It was designed for analysis as well as production for High Energy Physics. One of the advantages of this pilot based system is, that it has its own integrated monitoring solution. Monitoring is a method used in computing, it means that a certain process is observed and overseen and is usually also protocolled. In the case of a process or system failure, a responsible person should be notified and countermeasures taken. Since PanDA is very versatile, it can also be used to process jobs on a computing Cloud, instead of just using the Grid(WLCG). Cloud computing resources can be provided by private companies, that bill the resources that are actually being used, for example CPU power over time. The advantage of this is obvious if one looks at the cost. They are basically the same, whether a huge task is done on little CPU power over a long time or on plenty of CPU power in a short time. For these reasons, a close monitoring, for example by the PanDA system for the usage of Cloud resources is important.

  13. SWR 1000 related containment cooling system tests in PANDA

    International Nuclear Information System (INIS)

    Dreier, J.; Aubert, C.; Huggenberger, M.; Strassberger, H.J.; Yadigaroglu, G.

    2000-01-01

    Since 1991 the Paul Scherrer Institute has participated in the investigations of several of the new passive Advanced Light Water Reactor designs proposed world-wide. The current phase of the project, ALPHA-II, is focused on both the boiling water and the pressurized water reactor passive designs and consists of three projects under the sponsorship of the European Commission. The paper describes the performed PANDA transient system tests related to one of these projects, called 'BWR R and D Cluster for Innovative Passive Safety Systems (IPSS)', and details the PSI contribution to the experimental investigation of passive containment cooling by a Building Condenser system which is part of the advanced Boiling Water Reactor SWR 1000 designed by Siemens. First, a short description of the relevant systems of the SWR 1000 design and its simulation in the PANDA facility are presented. After the description of the experimental programme for the large-scale integral system test investigations in the PANDA facility, the main results of the performed tests are also given. Finally, the main conclusions, based on the to date available experimental results and their analysis, are summarised. (author)

  14. Simulation studies for the PANDA endcap disc DIRC

    Energy Technology Data Exchange (ETDEWEB)

    Schmidt, Mustafa; Biguenko, Klim; Dueren, Michael; Hayrapetyan, Avetik; Kroeck, Benno; Merle, Oliver; Rieke, Julian [II. Physikalisches Institut, Justus-Liebig-Universitaet, Giessen (Germany); Foehl, Klaus [CERN, Genf (Switzerland); Collaboration: PANDA-Collaboration

    2015-07-01

    The physics program of the PANDA detector at the future FAIR facility at GSI requires excellent particle identification. For the Panda forward endcap region a novel detector type called ''Disc DIRC'' has been designed. It covers the angular range between 5 and 22 degrees and uses internally reflected Cherenkov light in order to separate pions, kaons and protons up to a momentum of 4 GeV/c. During the design phase, extensive detector simulations have been performed to optimize and evaluate the design. The simulations were done using Geant4 and the PandaRoot framework in addition with a dedicated reconstruction software. An important aspect was the optimization of the imaging while taking the geometrical tolerances of the manufacturing process of the final detector into account. The main focus lies on the optimization process of the cylindrical and polynomial focussing optics at the edges of the detector plate, which has been performed with the merit function of a raytracer called PyOptics, written by one of the group members.

  15. Long Non-coding RNA, PANDA, Contributes to the Stabilization of p53 Tumor Suppressor Protein.

    Science.gov (United States)

    Kotake, Yojiro; Kitagawa, Kyoko; Ohhata, Tatsuya; Sakai, Satoshi; Uchida, Chiharu; Niida, Hiroyuki; Naemura, Madoka; Kitagawa, Masatoshi

    2016-04-01

    P21-associated noncoding RNA DNA damage-activated (PANDA) is induced in response to DNA damage and represses apoptosis by inhibiting the function of nuclear transcription factor Y subunit alpha (NF-YA) transcription factor. Herein, we report that PANDA affects regulation of p53 tumor-suppressor protein. U2OS cells were transfected with PANDA siRNAs. At 72 h post-transfection, cells were subjected to immunoblotting and quantitative reverse transcription-polymerase chain reaction. Depletion of PANDA was associated with decreased levels of p53 protein, but not p53 mRNA. The stability of p53 protein was markedly reduced by PANDA silencing. Degradation of p53 protein by silencing PANDA was prevented by treatment of MG132, a proteasome inhibitor. Moreover, depletion of PANDA prevented accumulation of p53 protein, as a result of DNA damage, induced by the genotoxic agent etoposide. These results suggest that PANDA stabilizes p53 protein in response to DNA damage, and provide new insight into the regulatory mechanisms of p53. Copyright© 2016 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.

  16. PANDA a multi-purpose thermal-hydraulics facility devoted to nuclear reactor containment safety analysis

    International Nuclear Information System (INIS)

    Paladino, Domenico

    2014-01-01

    This paper presents the multi purpose facility PANDA devised for the safety analysis of nuclear reactor containment. The passive safety systems for LWRs have been explained with details about the PAssive Nachzerfallswärmeabfuhr und Druck-Abbau Testanlage (PANDA)

  17. Evolution of the ATLAS PanDA workload management system for exascale computational science

    International Nuclear Information System (INIS)

    Maeno, T; Klimentov, A; Panitkin, S; Schovancova, J; Wenaus, T; Yu, D; De, K; Nilsson, P; Oleynik, D; Petrosyan, A; Vaniachine, A

    2014-01-01

    An important foundation underlying the impressive success of data processing and analysis in the ATLAS experiment [1] at the LHC [2] is the Production and Distributed Analysis (PanDA) workload management system [3]. PanDA was designed specifically for ATLAS and proved to be highly successful in meeting all the distributed computing needs of the experiment. However, the core design of PanDA is not experiment specific. The PanDA workload management system is capable of meeting the needs of other data intensive scientific applications. Alpha-Magnetic Spectrometer [4], an astro-particle experiment on the International Space Station, and the Compact Muon Solenoid [5], an LHC experiment, have successfully evaluated PanDA and are pursuing its adoption. In this paper, a description of the new program of work to develop a generic version of PanDA will be given, as well as the progress in extending PanDA's capabilities to support supercomputers and clouds and to leverage intelligent networking. PanDA has demonstrated at a very large scale the value of automated dynamic brokering of diverse workloads across distributed computing resources. The next generation of PanDA will allow other data-intensive sciences and a wider exascale community employing a variety of computing platforms to benefit from ATLAS' experience and proven tools.

  18. Evolution of the ATLAS PanDA Workload Management System for Exascale Computational Science

    CERN Document Server

    Maeno, T; The ATLAS collaboration; Klimentov, A; Nilsson, P; Oleynik, D; Panitkin, S; Petrosyan, A; Schovancova, J; Vaniachine, A; Wenaus, T; Yu, D

    2013-01-01

    An important foundation underlying the impressive success of data processing and analysis in the ATLAS experiment [1] at the LHC [2] is the Production and Distributed Analysis (PanDA) workload management system [3]. PanDA was designed specifically for ATLAS and proved to be highly successful in meeting all the distributed computing needs of the experiment. However, the core design of PanDA is not experiment specific. The PanDA workload management system is capable of meeting the needs of other data intensive scientific applications. Alpha-Magnetic Spectrometer [4], an astro-particle experiment on the International Space Station, and the Compact Muon Solenoid [5], an LHC experiment, have successfully evaluated PanDA and are pursuing its adoption. In this paper, a description of the new program of work to develop a generic version of PanDA will be given, as well as the progress in extending PanDA's capabilities to support supercomputers and clouds and to leverage intelligent networking. PanDA has demonstrated a...

  19. Evolution of the ATLAS PanDA Workload Management System for Exascale Computational Science

    CERN Document Server

    Maeno, T; The ATLAS collaboration; Klimentov, A; Nilsson, P; Oleynik, D; Panitkin, S; Petrosyan, A; Schovancova, J; Vaniachine, A; Wenaus, T; Yu, D

    2014-01-01

    An important foundation underlying the impressive success of data processing and analysis in the ATLAS experiment [1] at the LHC [2] is the Production and Distributed Analysis (PanDA) workload management system [3]. PanDA was designed specifically for ATLAS and proved to be highly successful in meeting all the distributed computing needs of the experiment. However, the core design of PanDA is not experiment specific. The PanDA workload management system is capable of meeting the needs of other data intensive scientific applications. Alpha-Magnetic Spectrometer [4], an astro-particle experiment on the International Space Station, and the Compact Muon Solenoid [5], an LHC experiment, have successfully evaluated PanDA and are pursuing its adoption. In this paper, a description of the new program of work to develop a generic version of PanDA will be given, as well as the progress in extending PanDA's capabilities to support supercomputers and clouds and to leverage intelligent networking. PanDA has demonstrated a...

  20. PD2P : PanDA Dynamic Data Placement for ATLAS

    CERN Multimedia

    CERN. Geneva

    2012-01-01

    The PanDA Dynamic Data Placement (PD2P) system has been developed to cope with difficulties of data placement for ATLAS. PD2P is an intelligent subsystem of PanDA to distribute data by taking the following factors into account: popularity, locality, the usage pattern of the data, the distribution of CPU and storage resources, ...

  1. Pulse pile-up recovery for the front-end electronics of the PANDA Electromagnetic Calorimeter

    NARCIS (Netherlands)

    Tambave, G.; Kavatsyuk, M.; Guliyev, E.; Schreuder, F.; Moeini, H.; Löhner, H.

    At the future Facility for Antiproton and Ion Research near Darmstadt in Germany the PANDA detector will be employed to study the charmonium spectrum and to search for narrow exotic hadronic states, predicted by Quantum Chromodynamics. In the PANDA experiment, 1.5 to 15GeV/c anti-protons will

  2. Pulse pile-up recovery for the front-end electronics of the PANDA Electromagnetic Calorimeter

    NARCIS (Netherlands)

    Tambave, G.; Guliyev, E.; Kavatsyuk, M.; Schreuder, F.; Löhner, H.

    2011-01-01

    To study the Charmonium spectrum and search for narrow exotic hadronic states, predicted by Quantum Chromodynamics, the PANDA detector will be employed at the future Facility for Antiproton and Ion Research near Darmstadt in Germany. In the PANDA experiment, 1.5 to 15 GeV/c anti-protons will collide

  3. Panda-Huggers and Dragon-Slayers: How to View Modern China Today

    Science.gov (United States)

    Gifford, Rob

    2010-01-01

    Panda-hugger and dragon-slayer are phrases used to describe two different kinds of China-watchers, and increasingly, two different types of people in the general public. A panda-hugger is someone who says that almost everything going on in China is good, that China's progress is a great thing for the world, and that any problems are peripheral. A…

  4. Pulse pile-up recovery for the front-end electronics of the PANDA Electromagnetic Calorimeter

    NARCIS (Netherlands)

    Tambave, G.; Kavatsyuk, M.; Guliyev, E.; Schreuder, F.; Moeini, H.; Löhner, H.

    2012-01-01

    At the future Facility for Antiproton and Ion Research near Darmstadt in Germany the PANDA detector will be employed to study the charmonium spectrum and to search for narrow exotic hadronic states, predicted by Quantum Chromodynamics. In the PANDA experiment, 1.5 to 15GeV/c anti-protons will

  5. PANDA-A novel instrument for non-destructive sample analysis

    International Nuclear Information System (INIS)

    Turunen, Jani; Peraejaervi, Kari; Poellaenen, Roy; Toivonen, Harri

    2010-01-01

    An instrument known as PANDA (Particles And Non-Destructive Analysis) for non-destructive sample analysis has been designed and built at the Finnish Radiation and Nuclear Safety Authority (STUK). In PANDA the measurement techniques and instruments designed for the basic research are applied to the analysis of environmental samples. PANDA has two vacuum chambers, one for loading samples and the other for measurements. In the measurement chamber there are two individual measurement positions. Currently the first one hosts an HPGe gamma detector and a position-sensitive alpha detector. The second measurement position is intended for precise characterization of found particles. PANDA's data are recorded in event mode and events are timestamped. In the present article the technical design of PANDA is presented in detail. In addition, its performance using depleted uranium particles and an air filter is demonstrated.

  6. PanDA: Exascale Federation of Resources for the ATLAS Experiment at the LHC

    Directory of Open Access Journals (Sweden)

    Megino Fernando Barreiro

    2016-01-01

    The PanDA (Production and Distributed Analysis system was developed in 2005 for the ATLAS experiment on top of this heterogeneous infrastructure to seamlessly integrate the computational resources and give the users the feeling of a unique system. Since its origins, PanDA has evolved together with upcoming computing paradigms in and outside HEP, such as changes in the networking model, Cloud Computing and HPC. It is currently running steadily up to 200 thousand simultaneous cores (limited by the available resources for ATLAS, up to two million aggregated jobs per day and processes over an exabyte of data per year. The success of PanDA in ATLAS is triggering the widespread adoption and testing by other experiments. In this contribution we will give an overview of the PanDA components and focus on the new features and upcoming challenges that are relevant to the next decade of distributed computing workload management using PanDA.

  7. PanDA Beyond ATLAS: Workload Management for Data Intensive Science

    CERN Document Server

    Schovancova, J; The ATLAS collaboration; Klimentov, A; Maeno, T; Nilsson, P; Oleynik, D; Panitkin, S; Petrosyan, A; Vaniachine, A; Wenaus, T; Yu, D

    2013-01-01

    The PanDA Production ANd Distributed Analysis system has been developed by ATLAS to meet the experiment's requirements for a data-driven workload management system for production and distributed analysis processing capable of operating at LHC data processing scale. After 7 years of impressively successful PanDA operation in ATLAS there are also other experiments which can benefit from PanDA in the Big Data challenge, with several at various stages of evaluation and adoption. The new project "Next Generation Workload Management and Analysis System for Big Data" is extending PanDA to meet the needs of other data intensive scientific applications in HEP, astro-particle and astrophysics communities, bio-informatics and other fields as a general solution to large scale workload management. PanDA can utilize dedicated or opportunistic computing resources such as grids, clouds, and High Performance Computing facilities, and is being extended to leverage next generation intelligent networks in automated workflow mana...

  8. A critical review of PANDAS research in the context of obsessive compulsive disorder

    Directory of Open Access Journals (Sweden)

    Jonathan E. Harvey

    2017-10-01

    Full Text Available The discovery and elaboration of pediatric autoimmune neuropsychiatric disorders associated with streptococcal infections (PANDAS is emerging from a polemical status and gaining wide recognition. Current research has proposed a specific neurological pathogenesis for the disorder. This paper connects the dominant neurobiological model of obsessive compulsive disorder (OCD with the proposed pathogenesis and treatment of PANDAS. PANDAS presentation is described and an important early debate regarding anti-neuronal antibodies in the brain of PANDAS patients is outlined. Recent research on a specific immunological trigger for antibodies that cause a blood brain barrier breakdown will be discussed along with treatment for the disorder. Future avenues of research are discussed including a critique of the seminal studies in PANDAS pathology and treatment from the focal point of the dominant OCD model.

  9. Lipase polystyrene giant amphiphiles.

    Science.gov (United States)

    Velonia, Kelly; Rowan, Alan E; Nolte, Roeland J M

    2002-04-24

    A new type of giant amphiphilic molecule has been synthesized by covalently connecting a lipase enzyme headgroup to a maleimide-functionalized polystyrene tail (40 repeat units). The resulting biohybrid forms catalytic micellar rods in water.

  10. Metaphyseal giant cell tumor

    International Nuclear Information System (INIS)

    Pereira, L.F.; Hemais, P.M.P.G.; Aymore, I.L.; Carmo, M.C.R. do; Cunha, M.E.P.R. da; Resende, C.M.C.

    1986-01-01

    Three cases of metaphyseal giant cell tumor are presented. A review of the literature is done, demostrating the lesion is rare and that there are few articles about it. Age incidence and characteristics of the tumor are discussed. (Author) [pt

  11. Giant CP stars

    International Nuclear Information System (INIS)

    Loden, L.O.; Sundman, A.

    1989-01-01

    This study is part of an investigation of the possibility of using chemically peculiar (CP) stars to map local galactic structure. Correct luminosities of these stars are therefore crucial. CP stars are generally regarded as main-sequence or near-main-sequence objects. However, some CP stars have been classified as giants. A selection of stars, classified in literature as CP giants, are compared to normal stars in the same effective temperature interval and to ordinary 'non giant' CP stars. There is no clear confirmation of a higher luminosity for 'CP giants', than for CP stars in general. In addition, CP characteristics seem to be individual properties not repeated in a component star or other cluster members. (author). 50 refs., 5 tabs., 3 figs

  12. Long noncoding RNA PANDA and scaffold-attachment-factor SAFA control senescence entry and exit.

    Science.gov (United States)

    Puvvula, Pavan Kumar; Desetty, Rohini Devi; Pineau, Pascal; Marchio, Agnés; Moon, Anne; Dejean, Anne; Bischof, Oliver

    2014-11-19

    Cellular senescence is a stable cell cycle arrest that limits the proliferation of pre-cancerous cells. Here we demonstrate that scaffold-attachment-factor A (SAFA) and the long noncoding RNA PANDA differentially interact with polycomb repressive complexes (PRC1 and PRC2) and the transcription factor NF-YA to either promote or suppress senescence. In proliferating cells, SAFA and PANDA recruit PRC complexes to repress the transcription of senescence-promoting genes. Conversely, the loss of SAFA-PANDA-PRC interactions allows expression of the senescence programme. Accordingly, we find that depleting either SAFA or PANDA in proliferating cells induces senescence. However, in senescent cells where PANDA sequesters transcription factor NF-YA and limits the expression of NF-YA-E2F-coregulated proliferation-promoting genes, PANDA depletion leads to an exit from senescence. Together, our results demonstrate that PANDA confines cells to their existing proliferative state and that modulating its level of expression can cause entry or exit from senescence.

  13. PANDA: pathway and annotation explorer for visualizing and interpreting gene-centric data.

    Science.gov (United States)

    Hart, Steven N; Moore, Raymond M; Zimmermann, Michael T; Oliver, Gavin R; Egan, Jan B; Bryce, Alan H; Kocher, Jean-Pierre A

    2015-01-01

    Objective. Bringing together genomics, transcriptomics, proteomics, and other -omics technologies is an important step towards developing highly personalized medicine. However, instrumentation has advances far beyond expectations and now we are able to generate data faster than it can be interpreted. Materials and Methods. We have developed PANDA (Pathway AND Annotation) Explorer, a visualization tool that integrates gene-level annotation in the context of biological pathways to help interpret complex data from disparate sources. PANDA is a web-based application that displays data in the context of well-studied pathways like KEGG, BioCarta, and PharmGKB. PANDA represents data/annotations as icons in the graph while maintaining the other data elements (i.e., other columns for the table of annotations). Custom pathways from underrepresented diseases can be imported when existing data sources are inadequate. PANDA also allows sharing annotations among collaborators. Results. In our first use case, we show how easy it is to view supplemental data from a manuscript in the context of a user's own data. Another use-case is provided describing how PANDA was leveraged to design a treatment strategy from the somatic variants found in the tumor of a patient with metastatic sarcomatoid renal cell carcinoma. Conclusion. PANDA facilitates the interpretation of gene-centric annotations by visually integrating this information with context of biological pathways. The application can be downloaded or used directly from our website: http://bioinformaticstools.mayo.edu/research/panda-viewer/.

  14. A test system for electronics components of the PANDA MVD

    Energy Technology Data Exchange (ETDEWEB)

    Lai, Alessandra; Stockmanns, Tobias; Ritman, James [Forschungszentrum Juelich (Germany); Collaboration: PANDA-Collaboration

    2016-07-01

    The PANDA experiment is one of the main devices at the upcoming Facility for Antiproton and Ion Research(FAIR), under construction in Darmstadt, Germany. This fixed target experiment will study the transition region between perturbative and non-perturbative QCD in the energy regime of the charmonium. The innermost sub-detector system of the target spectrometer of the PANDA experiment is the Micro Vertex Detector(MVD). Two types of silicon detectors will be used: pixel detectors and double-sided strip detectors. Two front-end chips are required: the Torino Pixel ASIC(ToPix) and the PANDA Strip ASIC(PASTA). Both are designed to transmit data at a rate of several hundred Megabits per second and are capable of handling the expected hit rate in hot spots of the detector. One key component in the development of new front-end electronics is a test system capable to handle these high rates. It should be flexible enough to test different kinds of front-end electronics and it should be easy to adapt to new prototypes. Therefore, an FPGA-based system is the ideal candidate. For this test system suitable firmware and a software framework are needed. Such a system is under development at the Forschungszentrum Juelich. The main component of the Juelich Digital Readout System(JDRS) is a Virtex 6 FPGA on a development board from Xilinx. In this talk, the mentioned read-out system are introduced, and lab tests with the front-end electronics of the MVD are presented.

  15. Simulations with the PANDA micro-vertex-detector

    International Nuclear Information System (INIS)

    Kliemt, Ralf

    2013-01-01

    The PANDA experiment will be built at the upcoming FAIR facility at GSI in Darmstadt, featuring antiproton-proton reactions hadron physics in a medium energy range. Charm physics will play an important role and therefore secondary decays relatively close to the interaction zone as well. The MVD will be the detector closest to these and will provide high-quality vertex position measurements. Alongside the detector layout and hardware development a detailed detector simulation and reconstruction software is required. This work contains the detailed description and the performance studies of the software developed for the MVD. Furthermore, vertexing tools are introduced and their performance is studied for the MVD.

  16. The experiment PANDA: physics with antiprotons at FAIR

    Directory of Open Access Journals (Sweden)

    Boca Gianluigi

    2015-01-01

    The PANDA experiment is designed to achieve the above mentioned physics goals with a setup with the following characteristics: an almost full solid angle acceptance; excellent tracking capabilities with high resolution (1–2 % at 1 GeV/c in the central region; secondary vertex detection with resolution ≈ 100 microns or better; electromagnetic calorimetry for detections of gammas and electrons up to 10 GeV; good particle identification of charge tracks (electrons, muons, pions, kaons, protons; a dedicated interchangeable central apparatus for the hypernuclear physics; detector and data acquisition system capable of working at 20 MHz interaction rate with an intelligent software trigger that can provide maximum flexibility.

  17. High-quality PWO crystals for the PANDA-EMC

    International Nuclear Information System (INIS)

    Novotny, R W; Bremer, D; Dormenev, V; Drexler, P; Eissner, T; Kuske, T; Moritz, M

    2011-01-01

    The paper provides a status report on the crystal production and quality control of a major part of the PbWO 4 crystals for the PANDA-EMC. The results confirm the excellent performance of the new generation of PWO-II. The mechanism of stimulated recovery provides an additional tool to recover radiation damage at room and low temperatures by applying an external infrared light source. Even on-line recovery can be considered if the photo sensor is insensitive in that particular wavelength region.

  18. Simulations with the PANDA micro-vertex-detector

    Energy Technology Data Exchange (ETDEWEB)

    Kliemt, Ralf

    2013-07-17

    The PANDA experiment will be built at the upcoming FAIR facility at GSI in Darmstadt, featuring antiproton-proton reactions hadron physics in a medium energy range. Charm physics will play an important role and therefore secondary decays relatively close to the interaction zone as well. The MVD will be the detector closest to these and will provide high-quality vertex position measurements. Alongside the detector layout and hardware development a detailed detector simulation and reconstruction software is required. This work contains the detailed description and the performance studies of the software developed for the MVD. Furthermore, vertexing tools are introduced and their performance is studied for the MVD.

  19. A pre-pubertal girl with giant juvenile fibroadenoma: A rare case report

    Directory of Open Access Journals (Sweden)

    Kumar Gaurav

    2015-01-01

    Conclusion: Through this case we want to emphasize that these giant benign neoplasms should be suspected in any pre-pubertal girl with breast lump and should always be treated with breast conserving surgery.

  20. PD2P: PanDA Dynamic Data Placement for ATLAS

    International Nuclear Information System (INIS)

    Maeno, T; Panitkin, S; De, K

    2012-01-01

    The PanDA (Production and Distributed Analysis) system plays a key role in the ATLAS distributed computing infrastructure. PanDA is the ATLAS workload management system for processing all Monte-Carlo (MC) simulation and data reprocessing jobs in addition to user and group analysis jobs. The PanDA Dynamic Data Placement (PD2P) system has been developed to cope with difficulties of data placement for ATLAS. We will describe the design of the new system, its performance during the past year of data taking, dramatic improvements it has brought about in the efficient use of storage and processing resources, and plans for the future.

  1. PD2P : PanDA Dynamic Data Placement for ATLAS

    OpenAIRE

    Maeno, T; De, K; Panitkin, S

    2012-01-01

    The PanDA (Production and Distributed Analysis) system plays a key role in the ATLAS distributed computing infrastructure. PanDA is the ATLAS workload management system for processing all Monte-Carlo (MC) simulation and data reprocessing jobs in addition to user and group analysis jobs. The PanDA Dynamic Data Placement (PD2P) system has been developed to cope with difficulties of data placement for ATLAS. We will describe the design of the new system, its performance during the past year of d...

  2. 2 T superconducting detector solenoid for the PANDA target spectrometer

    Energy Technology Data Exchange (ETDEWEB)

    Efremov, A.A.; Koshurnikov, E.K. [Joint Institute for Nuclear Research, High Energy Physics Laboratory, Joliot-Curie, 6, 141980 Dubna, Moscow Region (Russian Federation); Lobanov, Y.Y. [Joint Institute for Nuclear Research, High Energy Physics Laboratory, Joliot-Curie, 6, 141980 Dubna, Moscow Region (Russian Federation)], E-mail: lobanov@jinr.ru; Makarov, A.F. [Joint Institute for Nuclear Research, High Energy Physics Laboratory, Joliot-Curie, 6, 141980 Dubna, Moscow Region (Russian Federation); Orth, H. [Gesellschaft fuer Schwerionenforschung, Planckstrasse 1, D-64291, Darmstadt (Germany); Sissakian, A.N.; Vodopianov, A.S. [Joint Institute for Nuclear Research, High Energy Physics Laboratory, Joliot-Curie, 6, 141980 Dubna, Moscow Region (Russian Federation)

    2008-02-01

    This paper describes the JINR design of the large 2 T superconducting solenoid for the target spectrometer of the PANDA experiment at HESR (FAIR, GSI, Darmstadt, Germany). The solenoid coil has an inner radius of 1.08 m and a length of 2.90 m. This solenoid is non-centrally split providing a warm bore of 100 mm in diameter through the coil to accommodate sufficient space for the internal target installations. Maximally stored energy in the windings is 22.3 MJ. All tracking and calorimetric detectors surrounding the target point, with exception of a forward cone of 5{sup 0} opening, are placed inside the lqHe-cryostat. The main features of the design and technique are as follows: a copper stabilizer and soldering technique for the superconducting cable; a stainless steel cryostat; winding technique over a mandrel; coreless type of the coil; low operational current. The details of the PANDA solenoid design including the magnetic field and stress-strain calculations are covered.

  3. SciTil Detector for the PANDA experiment at FAIR

    Science.gov (United States)

    Suzuki, Ken; Gruber, Lukas; Brunner, Stefan; Marton, Johann; Orth, Herbert; Schwarz, Carsten; Scitil/Panda Collaboration

    2014-09-01

    The PANDA experiment at the Facility for Antiproton and Ion Research (FAIR) is a fixed-target experiment installed in a antiproton storage ring (HESR) in the energy range of 1 GeV to 15 GeV. FAIR is being build on the area of the GSI Helmholtzzentrum für Schwerionenforschung in Darmstadt, Germany. The universal PANDA detector together with the HESR enables to study fundamental questions of hadron and nuclear physics, e.g. gluonic excitations, the physics of strange and charm quarks and nucleon structure. The SciTil detector is a barrel time-of-flight detector and is a relatively new subcomponent to the system. The demand arose in order to provide a securer event tagging at the event rates of 20-100 MHz instantaneous event rate, to improve a particle identification capability of relatively low momentum particles, and to allow a faster track finding with pattern recognition. The beam test of the SciTil prototype detector in January 2014 showed a promising result. We report the status and outlook of the project.

  4. Sarcocystis spp. Infection in two Red Panda Cubs (Ailurus fulgens).

    Science.gov (United States)

    Zoll, W M; Needle, D B; French, S J; Lim, A; Bolin, S; Langohr, I; Agnew, D

    2015-01-01

    Two neonatal male red panda (Ailurus fulgens) littermates were submitted for necropsy examination. One animal was found dead with no prior signs of illness; the other had a brief history of laboured breathing. Post-mortem examination revealed disseminated protozoal infection. To further characterize the causative agent, transmission electron microscopy (TEM), immunohistochemistry (IHC), polymerase chain reaction (PCR) and amplification and nucleic acid sequencing were performed. IHC was negative for Toxoplasma gondii and Neospora caninum, but was positive for a Sarcocystis spp. TEM of cardiac muscle and lung revealed numerous intracellular apicomplexan protozoa within parasitophorous vacuoles. PCR and nucleic acid sequencing of partial 18S rRNA and the internal transcribed spacer (ITS)-1 region confirmed a Sarcocystis spp. that shared 99% sequence homology to Sarcocystis neurona and Sarcocystis dasypi. This represents the first report of sarcocystosis in red pandas. The histopathological, immunohistochemical, molecular and ultrastructural findings are supportive of vertical transmission resulting in fatal disseminated disease. Copyright © 2015 Elsevier Ltd. All rights reserved.

  5. Development of DIRC counters for the PANDA experiment at FAIR

    International Nuclear Information System (INIS)

    Seitz, B.; Bettoni, D.; Branford, D.; Britting, A.; Carassiti, V.; Cecchi, A.; Cowie, E.; Dodokhof, V.Kh.; Dueren, M.; Eyrich, W.; Foehl, K.; Hayrapetyan, A.; Hill, G.; Hoek, M.; Hohler, R.; Kaiser, R.; Keri, T.; Lehmann, A.; Lehmann, D.; Marton, J.

    2011-01-01

    The PANDA experiment at the planned FAIR facility at GSI, Darmstadt, aims at measuring hadronic final states with unprecedented precision and luminosity. Superior particle identification of charged and neutral particles is mandatory to fulfil PANDA's physics aims. DIRC (Detection of Internally Reflected Cherenkov light) counters are foreseen for charged particle identification. A barrel DIRC will cover the central region while a disc DIRC will provide particle identification in the forward region. Three DIRC concepts differing in the radiator geometry and method for dispersion correction are studied. The barrel DIRC uses a novel imaging system and aims at exploiting a 3D reconstruction to mitigate dispersion effects. Two concepts are investigated for the forward disc DIRC. One concept employs passive dispersion correction and focussing light guides for image reconstruction. Alternatively, time-of-propagation measurements and a wave-length dependent photon detection system are investigated. The three detector designs share common developments such as investigating radiator properties and photon detection systems, and use the same test beam facilities.

  6. The micro vertex detector for the anti PANDA experiment

    Energy Technology Data Exchange (ETDEWEB)

    Esch, Simone [Forschungszentrum Juelich (Germany); Collaboration: PANDA-Collaboration

    2015-07-01

    The anti PANDA detector is one of the main experiments at the upcoming Facility for Antiproton and Ion Research (FAIR), which is under construction in Darmstadt, Germany. The fixed-target experiment will explore anti pp annihilations with intense, phase space-cooled beams with momenta between 1.5 and 15 GeV/c. One aim of the detector is to perform high precision measurements of particles like excited charmonium and D mesons. Essential for background suppression is the tagging of D mesons by measuring their decay point. Therefore, a Micro Vertex Detector (MVD) is planned at anti PANDA as the innermost tracking detector. The MVD aims to reconstruct vertices with a resolution better than 100 μm to cope with the decay length of the D{sup ±} mesons (cτ=315 μm) produced with a mean βγ=2. The detector consists of silicon pixel and double-sided silicon strip detectors, arranged in four barrel layers and six disk layers. An overview of the MVD is given in this talk. Recent developments like laboratory and testbeam results of the current pixel front-end ASIC prototype ToPix 4 are shown. The concept of the newly developed strip front-end ASIC PASTA is presented.

  7. Study of preshower in the PANDA target spectrometer

    International Nuclear Information System (INIS)

    Dutta, Kamal; Kalita, Kushal; Suzuki, K.; Steinschaden, D.; Roy, B.J.

    2015-01-01

    PANDA (antiProton ANnihilation at DArmstdt) is one of the major projects at FAIR, GSI, Germany. The main objective of this experiment is to study the fundamental questions of hadron physics and QCD in pp¯ annihilation using high intensity cooled anti-proton beams with momenta between 1.5 GeV/c and 15 GeV/c. To achieve high momentum resolution and full solid angle coverage, the PANDA detector is split in to two parts: target spectrometer and forward spectrometer. The target spectrometer is a complex detector consisting of several subsystems surrounding the interaction point. It is surrounded by a 2 T superconducting solenoid magnet. A Micro Vertex Detector (MVD), close to interaction point, detects secondary vertices of D and Hyperon decays. The Straw Tube Tracker (STT) is the central tracking system around the MVD. A cherenkov counter named DIRC (Detection of Internally Reflected Cherenkov light), provides π/K separation for particle momenta up to 3.5 GeV/c. The barrel Time-of-Flight (TOF) detector, consists of plastic scintillator tiles with a time resolution of 100 ps. It is used to identify particles of momentum below cherenkov threshold

  8. Microglial Dysregulation in OCD, Tourette Syndrome, and PANDAS

    Directory of Open Access Journals (Sweden)

    Luciana Frick

    2016-01-01

    Full Text Available There is accumulating evidence that immune dysregulation contributes to the pathophysiology of obsessive-compulsive disorder (OCD, Tourette syndrome, and Pediatric Autoimmune Neuropsychiatric Disorders Associated with Streptococcal Infections (PANDAS. The mechanistic details of this pathophysiology, however, remain unclear. Here we focus on one particular component of the immune system: microglia, the brain’s resident immune cells. The role of microglia in neurodegenerative diseases has been understood in terms of classic, inflammatory activation, which may be both a consequence and a cause of neuronal damage. In OCD and Tourette syndrome, which are not characterized by frank neural degeneration, the potential role of microglial dysregulation is much less clear. Here we review the evidence for a neuroinflammatory etiology and microglial dysregulation in OCD, Tourette syndrome, and PANDAS. We also explore new hypotheses as to the potential contributions of microglial abnormalities to pathophysiology, beyond neuroinflammation, including failures in neuroprotection, lack of support for neuronal survival, and abnormalities in synaptic pruning. Recent advances in neuroimaging and animal model work are creating new opportunities to elucidate these issues.

  9. Microglial Dysregulation in OCD, Tourette Syndrome, and PANDAS

    Science.gov (United States)

    2016-01-01

    There is accumulating evidence that immune dysregulation contributes to the pathophysiology of obsessive-compulsive disorder (OCD), Tourette syndrome, and Pediatric Autoimmune Neuropsychiatric Disorders Associated with Streptococcal Infections (PANDAS). The mechanistic details of this pathophysiology, however, remain unclear. Here we focus on one particular component of the immune system: microglia, the brain's resident immune cells. The role of microglia in neurodegenerative diseases has been understood in terms of classic, inflammatory activation, which may be both a consequence and a cause of neuronal damage. In OCD and Tourette syndrome, which are not characterized by frank neural degeneration, the potential role of microglial dysregulation is much less clear. Here we review the evidence for a neuroinflammatory etiology and microglial dysregulation in OCD, Tourette syndrome, and PANDAS. We also explore new hypotheses as to the potential contributions of microglial abnormalities to pathophysiology, beyond neuroinflammation, including failures in neuroprotection, lack of support for neuronal survival, and abnormalities in synaptic pruning. Recent advances in neuroimaging and animal model work are creating new opportunities to elucidate these issues. PMID:28053994

  10. Feasibility study on the open charm rare decay at PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Kang, Donghee [Helmholtz Institut Mainz, Universitaet Mainz (Germany); Denig, Achim [Institut fuer Kernphysik, Universitaet Mainz (Germany); Collaboration: PANDA-Collaboration

    2015-07-01

    In the Standard Model (SM), Flavor Changing Neutral Currents (FCNC) are forbidden at the tree level and highly suppressed at the loop level by the GIM mechanism. Studies of such FCNC decay processes provide a sensitive probe of New Physics (NP) beyond the SM. Some of the SM extensions predict that the branching ratios of FCNC decays can be significantly enhanced by NP sources. We investigate the potential of rare charm decays to constrain the extension of the SM. A search for the FCNC decays of neutral D{sup 0} into two photons and two leptons or including radiative photon could be an opportunity to pursue with PANDA since electroweak channels involving photons in the final state are competitive with ongoing experiments. The event selection in the the environment of hadronic reactions is challenging, since the ratio between signal and background of about 10 orders of magnitude requires an effective background rejection. Results on the rare decay modes D{sup 0} → γγ and D{sup 0} → μ{sup +}μ{sup -} (γ) are presented, which were obtained using Monte Carlo simulations of the PANDA experiment. In this presentation, we perform an evaluation of upper limits of branching ratios incorporating previous experiments in sensitivity.

  11. Physics with charmonium - Highlights of BESIII and PANDA

    Science.gov (United States)

    Messchendorp, Johan

    2014-11-01

    The physics of the strong interaction is undoubtedly one of the most challenging areas of modern science. Quantum ChromoDynamics (QCD) is reproducing successfully the physics phenomena at distances much shorter than the size of the nucleon, where perturbation theory can be used yielding results of high precision and predictive power. At larger distance scales, however, perturbative methods cannot be applied anymore, although spectacular phenomena, such as the generation of hadron masses and quark confinement, occur. Studies using charmed quarks and gluon-rich matter have the potential to connect the perturbative and the non-perturbative QCD region. The annihilation of matter with antimatter in the mass regime of charmonium is an ideal environment to discover new states or transitions that could reveal the secrets of the strong interaction. Hadronic and electromagnetic transitions between charmonium states and their decays have been measured with a world-record in precision with the BESIII spectrometer at the electron-positron collider at IHEP Beijing, China. Moreover, unconventional narrow charmonium-rich states have been discovered recently in an energy regime above the open-charm threshold, thereby, possibly initiating a new era in charmonium spectroscopy. The near future experiment, PANDA, at the research facility FAIR in Germany, Darmstadt, will exploit the annihilation of cooled anti-protons with protons to perform charmonium spectroscopy with an incredible precision. I will present the most promising results that have been recently obtained with BESIII together with the future perspectives of PANDA in the field of charmonium spectroscopy.

  12. A new prototype for the PANDA disc DIRC detector

    Energy Technology Data Exchange (ETDEWEB)

    Rieke, Julian; Dueren, Michael; Hayrapetyan, Avetik; Foehl, Klaus; Kroeck, Benno; Merle, Oliver; Etzelmueller, Erik; Biguenko, Klim [Justus Liebig Universitaet, Giessen (Germany); Collaboration: PANDA-Collaboration

    2014-07-01

    The PANDA experiment at the future FAIR facility needs excellent particle identification to do precision studies of antiproton-proton reactions in the 1.5-15 GeV/c momentum range. To fulfill this need, two Cherenkov detectors will be installed in the PANDA target spectrometer, both based on the DIRC concept that uses internally reflected Cherenkov light to perform particle identification, with a focus on the separation of pions and kaons. The Disc-DIRC is designed to cap the forward region of theta angles between 5 and 22 degrees. It will be the first time that a 3D-Disc-DIRC is used for PID in a real physics experiment beyond prototyping. A new prototyping Disc-DIRC apparatus has been constructed at the JLU Giessen. Unlike previous prototypes, this one features a radiator as well as focusing elements made out of fused silica. The Cherenkov light is detected with 22 multi-anode-phototubes and 4 MCP-PMTs, totalling 608 individual pixels. Timing information for each of the latter is generated using the novel TRB3 system developed at GSI. The entire prototype was tested with an electron beam of several GeV/c provided by DESY in Hamburg. The components, their setup and a first analysis of the recorded data will be presented.

  13. TDC for the front end architecture in the PANDA MVD

    Energy Technology Data Exchange (ETDEWEB)

    Riccardi, Alberto; Brinkmann, Kai Thomas; Di Pietro, Valentino [II Physikalisches Institut Justus-Liebig-Universitaet Giessen, Giessen (Germany); Garbolino, Sara; Rivetti, Angelo; Rolo, Manuel [INFN Sezione di Torino, Torino (Italy); Collaboration: PANDA-Collaboration

    2014-07-01

    In nuclear detectors the information on the energy of the particle is usually obtained by measuring the amplitude of the signal delivered by the sensor. The low voltage power supply used in modern deep submicron technologies constrains the maximum dynamic range of the ADC. So we can obtain the energy information with time-based techniques, in which the energy is associated with the duration of the signal through the Time over Threshold method. This work is focused on the PANDA Micro Vertex Detector and explores the possibility of applying a time-based readout approach for the microstrip sensors. In PANDA, the strip system must cope with hit rates up to 50 kHz per channel. Therefore, the front-end output must be relatively short. This implies that the clock resolution is not enough to measure the signal duration, so it is necessary to use a Time to Digital Converter. The front-end and the TDC structure are designed in a 0.11μm CMOS process. The TDC chosen is based on an analog clock interpolator because it combines good time resolution with a fairly simple implementation and low power consumption. In the presentation the architectures are described and the challenges associated to its implementation discussed.

  14. ATLAS World-cloud and networking in PanDA

    CERN Document Server

    Barreiro Megino, Fernando Harald; The ATLAS collaboration; De, Kaushik; Di Girolamo, Alessandro; Walker, Rodney

    2016-01-01

    The ATLAS computing model was originally designed as static clouds (usually national or geographical groupings of sites) around the Tier 1 centers, which confined tasks and most of the data traffic. Since those early days, the sites' network bandwidth has increased at O(1000) and the difference in functionalities between Tier 1s and Tier 2s has reduced. After years of manual, intermediate solutions, we have now ramped up to full usage of World-cloud, the latest step in the PanDA Workload Management System to increase resource utilization on the ATLAS Grid, for all workflows (MC production, data (re)processing, etc.). We have based the development on two new site concepts. Nuclei sites are the Tier 1s and large Tier 2s, where tasks will be assigned and the output aggregated, and satellites are the sites that will execute the jobs and send the output to their nucleus. Nuclei and satellite sites are dynamically paired by PanDA for each task based on the input data availability, capability matching, site load and...

  15. ATLAS WORLD-cloud and networking in PanDA

    CERN Document Server

    AUTHOR|(SzGeCERN)643806; The ATLAS collaboration; De, Kaushik; Di Girolamo, Alessandro; Maeno, Tadashi; Walker, Rodney

    2017-01-01

    The ATLAS computing model was originally designed as static clouds (usually national or geographical groupings of sites) around the Tier 1 centres, which confined tasks and most of the data traffic. Since those early days, the sites' network bandwidth has increased at 0(1000) and the difference in functionalities between Tier 1s and Tier 2s has reduced. After years of manual, intermediate solutions, we have now ramped up to full usage of World-cloud, the latest step in the PanDA Workload Management System to increase resource utilization on the ATLAS Grid, for all workflows (MC production, data (re)processing, etc.). We have based the development on two new site concepts. Nuclei sites are the Tier 1s and large Tier 2s, where tasks will be assigned and the output aggregated, and satellites are the sites that will execute the jobs and send the output to their nucleus. PanDA dynamically pairs nuclei and satellite sites for each task based on the input data availability, capability matching, site load and network...

  16. Charged Particle ID with DIRCs in PANDA at FAIR

    Energy Technology Data Exchange (ETDEWEB)

    Schepers, Georg [GSI Helmholtzzentrum fuer Schwerionenforschung GmbH, Darmstadt (Germany); Collaboration: PANDA Cherenkov Group of the PANDA-Collaboration

    2015-07-01

    The PANDA detector at FAIR, the new international accelerator facility for antiprotons and ions in Darmstadt, will address open questions of hadronic physics. Experiments concerning charmonium spectroscopy are performed with antiproton beams colliding with hydrogen or nuclear targets. The beam momentum range between 1.5 GeV/c and 15 GeV/c allows tests of the predictions by perturbation theory, but will also reveal deviations originating from strong QCD. Excellent charged particle identification over a large momentum range is necessary for all these experiments. In the target spectrometer this will be accomplished by two Cherenkov counters using the DIRC principle, reducing the size of the solenoid and calorimeter. Both counters have to work in a strong magnetic field and withstand high event rates. The concept of the Barrel DIRC, covering the polar angles between 22 and 140 degrees, is based on the successful BaBar DIRC. It uses focusing optics with lenses and fast photon timing. The Endcap Disc DIRC works with a novel radiator geometry and covers the angular range from 5 to 22 degrees. In addition to a fast electronic readout it employs a compact photon detection system. Prototypes were tested with particle beams at GSI, CERN, DESY, and MAMI to validate the design choices. The results achieved and the status of the PANDA DIRC detectors are presented.

  17. Giant nuclear resonances

    International Nuclear Information System (INIS)

    Snover, K.A.

    1989-01-01

    Giant nuclear resonances are elementary mods of oscillation of the whole nucleus, closely related to the normal modes of oscillation of coupled mechanical systems. They occur systematically in most if not all nuclei, with oscillation energies typically in the range 10-30 MeV. One of the best - known examples is the giant electric dipole (El) resonance, in which all the protons and all the neutrons oscillate with opposite phase, producing a large time - varying electric dipole moment which acts as an effective antenna for radiating gamma ray. This paper discusses this mode as well as quadrupole and monopole modes

  18. Post-test analysis of PANDA test P4

    International Nuclear Information System (INIS)

    Hart, J.; Woudstra, A.; Koning, H.

    1999-01-01

    The results of a post-test analysis of the integral system test P4, which has been executed in the PANDA facility at PSI in Switzerland within the framework of Work Package 2 of the TEPSS project are presented. The post-test analysis comprises an evaluation of the PANDA test P4 and a comparison of the test results with the results of simulations using the RELAPS/MOD3.2, TRAC-BF1, and MELCOR 1.8.4 codes. The PANDA test P4 has provided data about how trapped air released from the drywell later in the transient affects PCCS performance in an adequate manner. The well-defined measurements can serve as an important database for the assessment of thermal hydraulic system analysis codes, especially for conditions that could be met in passively operated advanced reactors, i.e. low pressure and small driving forces. Based on the analysis of the test data, the test acceptance criteria have been met. The test P4 has been successfully completed and the instrument readings were with the permitted ranges. The PCCs showed a favorable and robust performance and a wide margin for decay heat removal from the containment. The PANDA P4 test demonstrated that trapped air, released from the drywell later in the transient, only temporarily and only slightly affected the performance of the passive containment cooling system. The analysis of the results of the RELAPS code showed that the overall behaviour of the test has been calculated quite well with regards to pressure, mass flow rates, and pool boil-down. This accounts both for the pre-test and the post-test simulations. However, due to the one-dimensional, stacked-volume modeling of the PANDA DW, WW, and GDCS vessels, 3D-effects such as in-vessel mixing and recirculation could not be calculated. The post-test MELCOR simulation showed an overall behaviour that is comparable to RELAPS. However, MELCOR calculated almost no air trapping in the PCC tubes that could hinder the steam condensation rate. This resulted in lower calculated

  19. ISP42 (PANDA Tests) - Open Phase Comparison Report

    International Nuclear Information System (INIS)

    2003-05-01

    PANDA is a large-scale facility, which has been constructed at the Paul Scherrer Institute (PSI) for the investigation of both overall dynamic response and the key phenomena of passive containment systems during the long-term heat removal phase for Advanced Light Water Reactors (ALWRs). Using a modular concept with a basic set of cylindrical vessels and connecting piping, the facility can be adapted to simulate different passive containment designs. Following a proposal, the OECD/NEA Committee on the Safety of Nuclear Installations approved, at its meeting on December 3-5, 1997, a new International Standard Problem (ISP) involving a test in the PANDA facility, based on a recommendation from the Principal Working Group 2 (PWG2) on System Behaviour. The main interest for this ISP is code validation in relation to a range of LWR and advanced LWR (ALWR) (mainly) containment issues that have been designated as important and involving thermalhydraulic phenomena. The ISP-PANDA test for defined six phases (A to F) was performed on 21/22 April 1998. Since the first part of ISP-42 was going to be conducted as a 'double- blind' or 'blind' exercise, the experimental data was locked. The 'blind' phase calculational results compared to experimental data are presented in the report entitled 'ISP-42 (PANDA Tests ) Blind Phase Comparison'. In the second part, the 'open' exercise has been conducted by providing the ISP-42 PANDA test data to the participants and by performing post-test analysis. The results of the 'open' phase are presented in the present report. 'Open' phase submissions, comparisons, and analyses for ISP-42 are based on the outcome of the results presented in the 'blind' phase report of ISP-42. The experimental data was distributed to all ISP-42 participants for their post-test calculations, 20 June 2000. 'Open' phase analyses of some of the ISP-42 participants, were completely received by the end of January 2001. There were 27 new submissions for different phases

  20. PanDA: distributed production and distributed analysis system for ATLAS

    International Nuclear Information System (INIS)

    Maeno, T

    2008-01-01

    A new distributed software system was developed in the fall of 2005 for the ATLAS experiment at the LHC. This system, called PANDA, provides an integrated service architecture with late binding of jobs, maximal automation through layered services, tight binding with ATLAS Distributed Data Management system [1], advanced error discovery and recovery procedures, and other features. In this talk, we will describe the PANDA software system. Special emphasis will be placed on the evolution of PANDA based on one and half year of real experience in carrying out Computer System Commissioning data production [2] for ATLAS. The architecture of PANDA is well suited for the computing needs of the ATLAS experiment, which is expected to be one of the first HEP experiments to operate at the petabyte scale

  1. Over Expression of Long Non-Coding RNA PANDA Promotes Hepatocellular Carcinoma by Inhibiting Senescence Associated Inflammatory Factor IL8.

    Science.gov (United States)

    Peng, Chuanhui; Hu, Wendi; Weng, Xiaoyu; Tong, Rongliang; Cheng, Shaobing; Ding, Chaofeng; Xiao, Heng; Lv, Zhen; Xie, Haiyang; Zhou, Lin; Wu, Jian; Zheng, Shusen

    2017-06-23

    It has been reported that long non-coding RNA PANDA was disregulated in varieties types of tumor, but its expression level and biological role in hepatocellular carcinoma (HCC) remains contradictory. We detected PANDA expression in two independent cohorts (48 HCC patients following liver transplantation and 84 HCC patients following liver resection), and found that PANDA was down-regulated in HCC. Thereafter we explored its function in cancer biology by inversing its low expression. Surprisingly, overexpression of PANDA promoted HCC proliferation and carcinogenesis in vitro and in vivo. Mechanistically, PANDA repressed transcriptional activity of senescence associated inflammatory factor IL8, which leaded to inhibition of cellular senescence. Therefore, our research help to better understand the complex role of PANDA in HCC, and suggest more thoughtful strategies should be applied before it can be treated as a potential therapeutic target.

  2. Serosurvey of infectious disease agents of carnivores in captive red pandas (Ailurus fulgens) in China.

    Science.gov (United States)

    Qin, Qin; Wei, Fuwen; Li, Ming; Dubovi, Edward J; Loeffler, I Kati

    2007-03-01

    The future of the endangered red panda (Ailurusfulgens) depends in part on the development of protective measures against infectious diseases. The present study is a first step toward improved understanding of infectious diseases in the species' home regions. Serum samples obtained from 73 red pandas in 10 captive facilities in southwest, east, and northeast China from October to December 2004 were tested for antibodies against nine common infectious pathogens of carnivores. Antibody titers against canine distemper virus (CDV), canine parvovirus (CPV), and canine adenovirus (CAV) in the three facilities in which red pandas were vaccinated were highly variable. The CAV titer in one vaccinated red panda was high enough to suggest infection with the field virus following vaccination. Together with anecdotal reports of vaccine-associated morbidity and mortality, our results suggest that the Chinese vaccine is not suitable for this species. In the seven unvaccinated groups, CDV titers were low and occurred in 20-100% of the animals; antibody titers against CPV were found in seven of eight areas. Only one of 61 and two of 61 unvaccinated red pandas had CAV and canine coronavirus titers, respectively, and these titers were all low. Positive titers to Toxoplasma gondii were found in four locations (33-94% seropositive); the titers in 52% of seropositive individuals were of a magnitude consistent with active disease in other species (1:1,024 to > or = 1:4,096). One red panda in each of three locations was seropositive for Neospora caninum. Antibodies against canine herpesvirus and Brucella canis were not detected in any of the samples. Only one of the 73 red pandas had a weak positive influenza A titer. The results of this study emphasize the need for research on and protection against infectious diseases of red pandas and other endangered species in China.

  3. PAN-DA and beyond: Data acquisition for the next generation experiments

    International Nuclear Information System (INIS)

    Pordes, R.; Anderson, J.; Berg, D.; Berman, E.; Brown, D.; Dorries, T.; Mackinnon, B.; Meadows, J.; Moore, C.; Nicinski, T.; Oleynik, G.; Petravick, D.; Rechenmacher, R.; Sergey, G.; Slimmer, D.; Streets, J.; Vittone, M.; Votava, M.; Wilcer, N.; White, V.

    1991-06-01

    We report on the status of the PAN-DA data acquisition system presented at the last Real Time Conference. Since that time, PAN-DA has been successfully used in the fixed target program at Fermilab. We also report on the plans and strategies for development of a new data acquisition system for the next generation of fixed target experiments at Fermilab. 10 refs., 3 figs

  4. Adoption, Cynical Detachment, and New Age Beliefs in Juno and Kung Fu Panda

    OpenAIRE

    Chen, Fu-jen

    2017-01-01

    In his article "Adoption, Cynical Detachment, and New Age Beliefs in Juno and Kung Fu Panda" Fu-Jen Chen situates his study within today's prevailing climate of global consumption to argue that the 2007 film Juno—featuring an unconventional portrayal of the adoption triad and a cynical detachment from public values—not only trivializes and depoliticizes the practice of adoption but also serves as an ideological supplement to today's global capitalism. Furthermore, Kung Fu Panda 1 & 2 (2008; 2...

  5. Giant Congenital Melanocytic Nevus

    DEFF Research Database (Denmark)

    Rasmussen, Bo Sonnich; Henriksen, Trine Foged; Kølle, Stig-Frederik Trojahn

    2015-01-01

    Giant congenital melanocytic nevi (GCMN) occur in 1:20,000 livebirths and are associated with increased risk of malignant transformation. The treatment of GCMN from 1981 to 2010 in a tertiary referral center was reviewed evaluating the modalities used, cosmetic results, associated complications...

  6. Waking the Sleeping Giant

    NARCIS (Netherlands)

    Ollenburger, Mary H.; Descheemaeker, Katrien; Crane, Todd A.; Sanogo, Ousmane M.; Giller, Ken E.

    2016-01-01

    The World Bank argued that West Africa's Guinea Savannah zone forms part of “Africa's Sleeping Giant,” where increases in agricultural production could be an engine of economic growth, through expansion of cultivated land in sparsely populated areas. The district of Bougouni, in southern Mali,

  7. Isotopic effect giant resonances

    International Nuclear Information System (INIS)

    Buenerd, M.; Lebrun, D.; Martin, P.; Perrin, G.; Saintignon, P. de; Chauvin, J.; Duhamel, G.

    1981-10-01

    The systematics of the excitation energy of the giant dipole, monopole, and quadrupole resonances are shown to exhibit an isotopic effect. For a given element, the excitation energy of the transition decreases faster with the increasing neutron number than the empirical laws fitting the overall data. This effect is discussed in terms of the available models

  8. Giant scrotal elephantiasis.

    Science.gov (United States)

    Kuepper, Daniel

    2005-02-01

    How much can a man carry? Penoscrotal elephantiasis is a debilitating syndrome. This is a case report of a patient with giant genital elephantiasis secondary to long-standing lymphogranuloma venereum infection in Ethiopia. Complete surgical resection of the pathologic tissue and penile reconstruction was undertaken with good cosmetic and functional results.

  9. Giant vesical calculus

    African Journals Online (AJOL)

    Giant vesical calculus. A case report. H. H. LAUBSCHER. Summary. An exceptional case of bladder stone is presented. The case is unusual as regards the size of the stone and the fact that the patient did··not seek medical assistance much earlier, as this was readily avail- able. Furthermore, recovery after removal of the.

  10. Juvenile giant fibroadenoma

    Directory of Open Access Journals (Sweden)

    Vipul Yagnik

    2011-07-01

    Full Text Available Fibroadenomas are benign solid tumor associated with aberration of normal lobular development. Juvenile giant fibroadenoma is usually single and >5 cm in size /or >500 gms in weight. Important differential diagnoses are: phyllodes tumor and juvenile gigantomastia. Simple excision is the treatment of choice.

  11. Giant abdominal cystic lymphangioma

    International Nuclear Information System (INIS)

    Vazquez, V.; Florencio, I.; Boluda, F.

    1996-01-01

    We present a case of giant abdominal cystic lymphangioma in a 10-year-old boy. Despite numerous consultations with physicians to identify the underlying problem, it had originally been attributed to ascites of unknown cause. We review the characteristics of this lesion and the diagnostic features that aid in differentiating it from ascites

  12. Giant peritoneal loose bodies

    African Journals Online (AJOL)

    2015-03-27

    Mar 27, 2015 ... not be familiar with the entity, can potentially be confused with malignant or parasitic lesions. Familiarity with their characteristic computed tomographic ... preventing unnecessary surgical intervention in an asymptomatic patient.3,4 It is important to differentiate giant peritoneal loose bodies from lesions such ...

  13. Optimizing new components of PanDA for ATLAS production on HPC resources

    CERN Document Server

    Maeno, Tadashi; The ATLAS collaboration

    2017-01-01

    The Production and Distributed Analysis system (PanDA) has been used for workload management in the ATLAS Experiment for over a decade. It uses pilots to retrieve jobs from the PanDA server and execute them on worker nodes. While PanDA has been mostly used on Worldwide LHC Computing Grid (WLCG) resources for production operations, R&D work has been ongoing on cloud and HPC resources for many years. These efforts have led to the significant usage of large scale HPC resources in the past couple of years. In this talk we will describe the changes to the pilot which enabled the use of HPC sites by PanDA, specifically the Titan supercomputer at Oakridge National Laboratory. Furthermore, it was decided in 2016 to start a fresh redesign of the Pilot with a more modern approach to better serve present and future needs from ATLAS and other collaborations that are interested in using the PanDA System. Another new project for development of a resource oriented service, PanDA Harvester, was also launched in 2016. The...

  14. Slab-coupled optical sensor fabrication using side-polished Panda fibers.

    Science.gov (United States)

    King, Rex; Seng, Frederick; Stan, Nikola; Cuzner, Kevin; Josephson, Chad; Selfridge, Richard; Schultz, Stephen

    2016-11-01

    A new device structure used for slab-coupled optical sensor (SCOS) technology was developed to fabricate electric field sensors. This new device structure replaces the D-fiber used in traditional SCOS technology with a side-polished Panda fiber. Unlike the D-fiber SCOS, the Panda fiber SCOS is made from commercially available materials and is simpler to fabricate. The Panda SCOS interfaces easier with lab equipment and exhibits ∼3  dB less loss at link points than the D-fiber SCOS. The optical system for the D-fiber is bandwidth limited by a transimpedance amplifier (TIA) used to amplify to the electric signal. The Panda SCOS exhibits less loss than the D-fiber and, as a result, does not require as high a gain setting on the TIA, which results in an overall higher bandwidth range. Results show that the Panda sensor also achieves comparable sensitivity results to the D-fiber SCOS. Although the Panda SCOS is not as sensitive as other side-polished fiber electric field sensors, it can be fabricated much easier because the fabrication process does not require special alignment techniques, and it is made from commercially available materials.

  15. Hypernuclear physics studies of the PANDA experiment at FAIR

    Science.gov (United States)

    Sanchez Lorente, Alicia

    2014-09-01

    Hypernuclear research will be one of the main topics addressed by the PANDA experiment at the planned Facility for Antiproton and Ion Research FAIR at Darmstadt (Germany). http://www. gsi.de, http://www.gsi.de/fair/. Thanks to the use of stored overline {p} beams, copious production of double Λ hypernuclei is expected at the PANDA experiment, which will enable high precision γ spectroscopy of such nuclei for the first time, and consequently a unique chance to explore the hyperon-hyperon interaction. In particular, ambiguities of past experiments in determining the strength of the ΛΛ interaction will be avoided thanks to the excellent energy precision of a few keV (FWHM) achieved by germanium detectors. Such a resolution capability is particularly needed to resolve the small energy spacing of the order of (10-100) keV, which is characteristic from the spin doublet in hypernuclei the so -called "hypernuclear fine structure". In comparison to previous experiments, PANDA will benefit from a novel technique to assign the various observable γ-transitions in a unique way to specific double hypernuclei by exploring various light targets. Nevertheless, the ability to carry out unique assignments requires a devoted hypernuclear detector setup. This consists of a primary nuclear target for the production of {Ξ }-+overline {Ξ } pairs, a secondary active target for the hypernuclei formation and the identification of associated decay products and a germanium array detector to perform γ spectroscopy. Moreover, one of the most challenging issues of this project is the fact that all detector systems need to operate in the presence of a high magnetic field and a large hadronic background. Accordingly, the need of an innovative detector concept will require dramatic improvements to fulfil these conditions and that will likely lead to a new generation of detectors. In the present talk details concerning the current status of the activities related to the detector developments

  16. The bar PANDA Barrel-TOF Detector at FAIR

    Science.gov (United States)

    Zimmermann, S.; Suzuki, K.; Steinschaden, D.; Chirita, M.; Ahmed, G.; Dutta, K.; Kalita, K.; Lehmann, A.; Böhm, M.; Schwarz, K.; Orth, H.; Brinkmann, K.-Th.

    2017-08-01

    The barrel-Time-of-Flight subdetector is one of the outer layers of the multi-layer design of the \\panda target spectrometer. It is designed with a minimal material budget in mind mainly consisting of 90×30×5 mm3 thin plastic scintillator tiles read out on each end by a serial connection of 4 SiPMs. 120 such tiles are placed on 16 2460 × 180 mm2 PCB boards forming a barrel covering an azimuthal angle from 22.5o to 150o. The detector is designed to achieve a time resolution below σ< 100 ps which allows to distinguish events in the constant stream of hits, as well as particle identification below the Cherenkov threshold via the time-of-flight; simultaneously providing the interaction times of events. The current prototype achieved a time resolution of ~54 ps, well below the design goal.

  17. The prototype triggerless data acquisition of the PANDA experiment

    Energy Technology Data Exchange (ETDEWEB)

    Wagner, Milan; Reiter, Simon; Lange, Soeren; Kuehn, Wolfgang [II. Physikalisches Institut, Giessen Univ. (Germany); Collaboration: PANDA-Collaboration

    2016-07-01

    The PANDA detector will operate with a very high interaction rate of up to 20 MHz, in a free streaming mode without hardware trigger. Data filtering will be performed by complete online event reconstruction with a highly parallelized farm of FPGAs as first level and on a farm of GPUs or PCs as a second level. The requirement is a background reduction by a factor of >1000. A prototype trigger-less data acquisition (PTDAQ) system for the detector validation measurements comprises free streaming and synchronization readout, for event building and filtering has been developed. A first in beam environment test was performed at the Mainzer Mikrotron, reading out the barrel electromagnetic calorimeter prototype (Proto120).

  18. FPGA Online Tracking Algorithm for the PANDA Straw Tube Tracker

    Science.gov (United States)

    Liang, Yutie; Ye, Hua; Galuska, Martin J.; Gessler, Thomas; Kuhn, Wolfgang; Lange, Jens Soren; Wagner, Milan N.; Liu, Zhen'an; Zhao, Jingzhou

    2017-06-01

    A novel FPGA based online tracking algorithm for helix track reconstruction in a solenoidal field, developed for the PANDA spectrometer, is described. Employing the Straw Tube Tracker detector with 4636 straw tubes, the algorithm includes a complex track finder, and a track fitter. Implemented in VHDL, the algorithm is tested on a Xilinx Virtex-4 FX60 FPGA chip with different types of events, at different event rates. A processing time of 7 $\\mu$s per event for an average of 6 charged tracks is obtained. The momentum resolution is about 3\\% (4\\%) for $p_t$ ($p_z$) at 1 GeV/c. Comparing to the algorithm running on a CPU chip (single core Intel Xeon E5520 at 2.26 GHz), an improvement of 3 orders of magnitude in processing time is obtained. The algorithm can handle severe overlapping of events which are typical for interaction rates above 10 MHz.

  19. Particle identification algorithms for the PANDA Endcap Disc DIRC

    Science.gov (United States)

    Schmidt, M.; Ali, A.; Belias, A.; Dzhygadlo, R.; Gerhardt, A.; Götzen, K.; Kalicy, G.; Krebs, M.; Lehmann, D.; Nerling, F.; Patsyuk, M.; Peters, K.; Schepers, G.; Schmitt, L.; Schwarz, C.; Schwiening, J.; Traxler, M.; Böhm, M.; Eyrich, W.; Lehmann, A.; Pfaffinger, M.; Uhlig, F.; Düren, M.; Etzelmüller, E.; Föhl, K.; Hayrapetyan, A.; Kreutzfeld, K.; Merle, O.; Rieke, J.; Wasem, T.; Achenbach, P.; Cardinali, M.; Hoek, M.; Lauth, W.; Schlimme, S.; Sfienti, C.; Thiel, M.

    2017-12-01

    The Endcap Disc DIRC has been developed to provide an excellent particle identification for the future PANDA experiment by separating pions and kaons up to a momentum of 4 GeV/c with a separation power of 3 standard deviations in the polar angle region from 5o to 22o. This goal will be achieved using dedicated particle identification algorithms based on likelihood methods and will be applied in an offline analysis and online event filtering. This paper evaluates the resulting PID performance using Monte-Carlo simulations to study basic single track PID as well as the analysis of complex physics channels. The online reconstruction algorithm has been tested with a Virtex4 FGPA card and optimized regarding the resulting constraints.

  20. Developments toward a silicon strip tracker for the PANDA experiment

    International Nuclear Information System (INIS)

    Zaunick, Hans-Georg

    2013-01-01

    The PANDA detector at the future FAIR facility in Darmstadt will be a key experiment in the understanding of the strong interaction at medium energies where perturbative models fail to describe the quark-quark interaction. An important feature of the detector system is the ability to reconstruct secondary decay vertices of short-lived intermediate states by means of a powerful particle tracking system with the the Micro-Vertex Detector (MVD) as central element to perform high-resolution charmonium and open-charm spectroscopy. The MVD is conceived with pixel detectors in the inner parts and double-sided silicon strip detectors at the outer half in a very lightweight design. The PANDA detector system shall be operated in a self-triggering broadband acquisition mode. Implications on the read-out electronics and the construction of the front-end assemblies are analyzed and evaluation of prototype DSSD-detectors wrt. signal-to-noise ratio, noise figures, charge sharing behavior, spatial resolution and radiation degradation discussed. Methods of electrical sensor characterization with different measurement setups are investigated which may be useful for future large-scale QA procedures. A novel algorithm for recovering multiple degenerate cluster hit patterns of double-sided strip sensors is introduced and a possible architecture of a Module Data Concentrator ASIC (MDC) aggregating multiple front-end data streams conceived. A first integrative concept for the construction and assembly of DSSD modules for the barrel part of the MVD is introduced as a conclusion of the thesis. Furthermore, a detailed description of a simplified procedure for the calculation of displacement damage in compound materials is given as reference which was found useful for the retrieval of non-ionizing energy loss for materials other than silicon.

  1. Giant cystic craniopharyngiomas

    International Nuclear Information System (INIS)

    Young, S.C.; Zimmerman, R.A.; Nowell, M.A.; Bilaniuk, L.T.; Hackney, D.B.; Grossman, R.I.; Goldberg, H.I.

    1987-01-01

    Three cases of giant cystic craniopharyngiomas with large areas of extension beyond the suprasellar area are presented. The magnetic resonance (MR) appearance in one case is described. These giant tumors had large, multilobulated cysts that comprised the bulk of the tumors. In one case, there was an unusual extension of the large tumor cyst into the lateral ventricle. In two cases, the tumors extended to the level of the foramen magnum. On CT, the cyst contents of these two tumors were hyperdense and became hypodense postoperatively. All three tumors harbored calcifications in the form of clumps in the suprasellar region and rim calcifications around the cysts. None of the tumors exhibited contrast enhancement. A literature review of the radiographic features of craniopharyngiomas is discussed. (orig.)

  2. Giant duodenal ulcers

    Institute of Scientific and Technical Information of China (English)

    Eric Benjamin Newton; Mark R Versland; Thomas E Sepe

    2008-01-01

    Giant duodenal ulcers (GDUs) are a subset of duodenal ulcers that have historically resulted in greater morbidity than usual duodenal ulcers. Until recently,few cases had been successfully treated with medical therapy. However, the widespread use of endoscopy,the introduction of H-2 receptor blockers and proton pump inhibitors, and the improvement in surgical techniques all have revolutionized the diagnosis,treatment and outcome of this condition. Nevertheless,GDUs are still associated with high rates of morbidity,mortality and complications. Thus, surgical evaluation of a patient with a GDU should remain an integral part of patient care. These giant variants, while usually benign, can frequently harbor malignancy. A careful review of the literature highlights the important differences when comparing GDUs to classical peptic ulcers and why they must be thought of differently than their more common counterpart.

  3. Multispin giant magnons

    International Nuclear Information System (INIS)

    Bobev, N. P.; Rashkov, R. C.

    2006-01-01

    We investigate giant magnons from classical rotating strings in two different backgrounds. First we generalize the solution of Hofman and Maldacena and investigate new magnon excitations of a spin chain which are dual to a string on RxS 5 with two nonvanishing angular momenta. Allowing string dynamics along the third angle in the five sphere, we find a dispersion relation that reproduces the Hofman and Maldacena one and the one found by Dorey for the two spin case. In the second part of the paper we generalize the two 'spin' giant magnon to the case of β-deformed AdS 5 xS 5 background. We find agreement between the dispersion relation of the rotating string and the proposed dispersion relation of the magnon bound state on the spin chain

  4. Red giants seismology

    Science.gov (United States)

    Mosser, B.; Samadi, R.; Belkacem, K.

    2013-11-01

    The space-borne missions CoRoT and Kepler are indiscreet. With their asteroseismic programs, they tell us what is hidden deep inside the stars. Waves excited just below the stellar surface travel throughout the stellar interior and unveil many secrets: how old is the star, how big, how massive, how fast (or slow) its core is dancing. This paper intends to paparazze the red giants according to the seismic pictures we have from their interiors.

  5. Giant Otters in Peru

    OpenAIRE

    Schenk C.; Staib E.

    1992-01-01

    We are in the second year of fieldwork surveying for Giant Otters in the southeastern rainforest of Peru, in three areas with differing levels of legal protection. While there is some illegal hunting still happening outside the protected areas, the main threat to the otters is badly-conducted tourism. Well-organised tourism can be a promising argument for establishing protected areas like national parks.

  6. Intraoral giant condyloma acuminatum

    Directory of Open Access Journals (Sweden)

    Gupta R

    2001-09-01

    Full Text Available A case of intraoral giant condyloma acuminatum is reported in a 50- year- old Indian. He did not respond to topical application of podophyllin 20% but responded partially to electric cauterisation. Surgical excision was done to get rid of the warty growh completely. Since there were no skin or genital lesions and no history of marital or extramarital sexual contact the lesion was probably acquired from environmental sources. Nonsexual transmission should be considered especially when the lesions are extragenital.

  7. Giant prolactinomas in women

    DEFF Research Database (Denmark)

    Delgrange, Etienne; Raverot, Gerald; Bex, Marie

    2014-01-01

    OBJECTIVE: To characterise distinctive clinical features of giant prolactinomas in women. DESIGN: A multicentre, retrospective case series and literature review. METHODS: We collected data from 15 female patients with a pituitary tumour larger than 4 cm and prolactin levels above 1000 μg/l and id......OBJECTIVE: To characterise distinctive clinical features of giant prolactinomas in women. DESIGN: A multicentre, retrospective case series and literature review. METHODS: We collected data from 15 female patients with a pituitary tumour larger than 4 cm and prolactin levels above 1000 μg....../l and identified 19 similar cases from the literature; a gender-based comparison of the frequency and age distribution was obtained from a literature review. RESULTS: The initial PubMed search using the term 'giant prolactinomas' identified 125 patients (13 women) responding to the inclusion criteria. The female......:male ratio was 1:9. Another six female patients were found by extending the literature search, while our own series added 15 patients. The median age at diagnosis was 44 years in women compared with 35 years in men (Pwomen (n=34), we...

  8. PANDA experiment and International Standard Problem for passive cooling systems for afterheat removal; PANDA-Versuch und Internationales Standardproblem zu passiven Kuehlsystemen fuer die Nachwaermeabfuhr

    Energy Technology Data Exchange (ETDEWEB)

    Yadigaroglu, G.; Aksan, N.S. [Paul Scherrer Inst. (PSI), Villigen (Switzerland). Lab. fuer Thermohydraulik

    1999-09-03

    In the context of OECD/NEA, Paul Scherrer Institut (PSI) is working on an International Standard Problem which is to provide information on the efficiency and use of computer program systems for passive afterheat removal systems. The PANDA test facility of PSI was designed for these investigations. A six-phase PANDA experiment provides a basis for pre-calculation and recalculation of selected phases covering a limited number of system-typical operating states and phenomena. The experiment was specified and carried out in the year under report. [Deutsch] Im Rahmen der OECD/NEA fuehrt das Paul Scherrer Institut (PSI) ein Internationales Standardproblem durch, das Aufschluss ueber die Leistungsfaehigkeit und Handhabung von Computer-Programmsystemen geben soll, die im Zusammenhang mit passiven Nachwaerme-Abfuhrsystemen eingesetzt werden. Die Versuchsanlage PANDA am PSI ist speziell auf die Untersuchung derartiger Systeme ausgerichtet. Ein PANDA-Versuch in sechs Phasen liefert den teilnehmenden Organisationen die Basis fuer Voraus- und Nachrechnungen einzelner oder mehrerer Phasen, die jeweils eine begrenzte Anzahl von systemtypischen Betriebszustaenden und Phaenomenen abdecken. Im Berichtsjahr wurde der Versuch spezifiziert und gefahren. (orig.)

  9. The appearance of 'Lambda' and 'Panda' sign on Ga-67 scintigraphy in sarcoidosis

    International Nuclear Information System (INIS)

    Yoshimizu, Tazuko; Suga, Kazuyoshi; Orihashi, Norihiro; Soejima, Kyoko; Kaneko, Takafumi; Kawamura, Mitsutoshi; Nakanishi, Takashi; Utsumi, Hiromoto; Yamada, Norimasa

    1991-01-01

    The lesions of sarcoidosis generally show relatively high Ga-67 uptake and the usefulness of scintigraphy using this agent in the evaluation of lesion activity is well known. In this report, we assessed characteristic uptake of Ga-67 in intrathoracic lymph nodes, the shape of which resembled the Greek letter Lambda (Lambda sign) and a symmetrical accumulation in bilateral lacrimal and salivary glands which resembled a Panda face (Panda sign) in patients with sarcoidosis. Our review of Ga-67 scans obtained from 15 patients with sarcoidosis and 1,779 patients with other disorders during the past 3 years revealed that the simultaneous presence of both Lambda and Panda signs was specific to patients with sarcoidosis and was not found in patients with various other disorders, although one of these signs might be observed in patients without sarcoidosis. When Lambda-like sign was observed, chest radiogram or CT was necessary for the differential diagnosis of sarcoidosis. Panda sign was observed frequently among patients who had previously received irradiation of the neck. Our results confirmed that sarcoidosis must be suspected when both Lambda and Panda signs were observed. (author)

  10. Global heterogeneous resource harvesting: the next-generation PanDA Pilot for ATLAS

    CERN Document Server

    Nilsson, Paul; The ATLAS collaboration

    2017-01-01

    The Production and Distributed Analysis system (PanDA), used for workload management in the ATLAS Experiment for over a decade, has in recent years expanded its reach to diverse new resource types such as HPCs, and innovative new workflows such as the Event Service. PanDA meets the heterogeneous resources it harvests in the PanDA pilot, which has embarked on a next-generation reengineering to efficiently integrate and exploit the new platforms and workflows. The new modular architecture is the product of a year of design and prototyping in conjunction with the design of a completely new component, Harvester, that will mediate a richer flow of control and information between pilot and PanDA. Harvester will enable more intelligent and dynamic matching between processing tasks and resources, with an initial focus on HPCs, simplifying the operator and user view of a PanDA site but internally leveraging deep information gathering on the resource to accrue detailed knowledge of a site's capabilities and dynamic sta...

  11. Global heterogeneous resource harvesting: the next-generation PanDA pilot for ATLAS

    CERN Document Server

    Nilsson, Paul; The ATLAS collaboration

    2017-01-01

    The Production and Distributed Analysis system (PanDA), used for workload management in the ATLAS Experiment for over a decade, has in recent years expanded its reach to diverse new resource types such as HPCs, and innovative new workflows such as the event service. PanDA meets the heterogeneous resources it harvests in the PanDA pilot, which has embarked on a next-generation reengineering to efficiently integrate and exploit the new platforms and workflows. The new modular architecture is the product of a year of design and prototyping in conjunction with the design of a completely new component, Harvester, that will mediate a richer flow of control and information between pilot and PanDA. Harvester will enable more intelligent and dynamic matching between processing tasks and resources, with an initial focus on HPCs, simplifying the operator and user view of a PanDA site but internally leveraging deep information gathering on the resource to accrue detailed knowledge of a site's capabilities and dynamic sta...

  12. PanDA: Exascale Federation of Resources for the ATLAS Experiment at the LHC

    Science.gov (United States)

    Barreiro Megino, Fernando; Caballero Bejar, Jose; De, Kaushik; Hover, John; Klimentov, Alexei; Maeno, Tadashi; Nilsson, Paul; Oleynik, Danila; Padolski, Siarhei; Panitkin, Sergey; Petrosyan, Artem; Wenaus, Torre

    2016-02-01

    After a scheduled maintenance and upgrade period, the world's largest and most powerful machine - the Large Hadron Collider(LHC) - is about to enter its second run at unprecedented energies. In order to exploit the scientific potential of the machine, the experiments at the LHC face computational challenges with enormous data volumes that need to be analysed by thousand of physics users and compared to simulated data. Given diverse funding constraints, the computational resources for the LHC have been deployed in a worldwide mesh of data centres, connected to each other through Grid technologies. The PanDA (Production and Distributed Analysis) system was developed in 2005 for the ATLAS experiment on top of this heterogeneous infrastructure to seamlessly integrate the computational resources and give the users the feeling of a unique system. Since its origins, PanDA has evolved together with upcoming computing paradigms in and outside HEP, such as changes in the networking model, Cloud Computing and HPC. It is currently running steadily up to 200 thousand simultaneous cores (limited by the available resources for ATLAS), up to two million aggregated jobs per day and processes over an exabyte of data per year. The success of PanDA in ATLAS is triggering the widespread adoption and testing by other experiments. In this contribution we will give an overview of the PanDA components and focus on the new features and upcoming challenges that are relevant to the next decade of distributed computing workload management using PanDA.

  13. Integration of PanDA workload management system with Titan supercomputer at OLCF

    CERN Document Server

    AUTHOR|(INSPIRE)INSPIRE-00300320; Klimentov, Alexei; Oleynik, Danila; Panitkin, Sergey; Petrosyan, Artem; Vaniachine, Alexandre; Wenaus, Torre; Schovancova, Jaroslava

    2015-01-01

    The PanDA (Production and Distributed Analysis) workload management system (WMS) was developed to meet the scale and complexity of LHC distributed computing for the ATLAS experiment. While PanDA currently distributes jobs to more than 100,000 cores at well over 100 Grid sites, next LHC data taking run will require more resources than Grid computing can possibly provide. To alleviate these challenges, ATLAS is engaged in an ambitious program to expand the current computing model to include additional resources such as the opportunistic use of supercomputers. We will describe a project aimed at integration of PanDA WMS with Titan supercomputer at Oak Ridge Leadership Computing Facility (OLCF). Current approach utilizes modi ed PanDA pilot framework for job submission to Titan's batch queues and local data management, with light-weight MPI wrappers to run single threaded workloads in parallel on Titan's multi-core worker nodes. It also gives PanDA new capability to collect, in real time, information about unused...

  14. Integration of PanDA workload management system with Titan supercomputer at OLCF

    CERN Document Server

    Panitkin, Sergey; The ATLAS collaboration; Klimentov, Alexei; Oleynik, Danila; Petrosyan, Artem; Schovancova, Jaroslava; Vaniachine, Alexandre; Wenaus, Torre

    2015-01-01

    The PanDA (Production and Distributed Analysis) workload management system (WMS) was developed to meet the scale and complexity of LHC distributed computing for the ATLAS experiment. While PanDA currently uses more than 100,000 cores at well over 100 Grid sites with a peak performance of 0.3 petaFLOPS, next LHC data taking run will require more resources than Grid computing can possibly provide. To alleviate these challenges, ATLAS is engaged in an ambitious program to expand the current computing model to include additional resources such as the opportunistic use of supercomputers. We will describe a project aimed at integration of PanDA WMS with Titan supercomputer at Oak Ridge Leadership Computing Facility (OLCF). Current approach utilizes modified PanDA pilot framework for job submission to Titan's batch queues and local data management, with light-weight MPI wrappers to run single threaded workloads in parallel on Titan's multi-core worker nodes. It also gives PanDA new capability to collect, in real tim...

  15. Experience with ATLAS MySQL PanDA database service

    International Nuclear Information System (INIS)

    Smirnov, Y; Wlodek, T; Hover, J; Smith, J; Wenaus, T; Yu, D; De, K; Ozturk, N

    2010-01-01

    The PanDA distributed production and analysis system has been in production use for ATLAS data processing and analysis since late 2005 in the US, and globally throughout ATLAS since early 2008. Its core architecture is based on a set of stateless web services served by Apache and backed by a suite of MySQL databases that are the repository for all PanDA information: active and archival job queues, dataset and file catalogs, site configuration information, monitoring information, system control parameters, and so on. This database system is one of the most critical components of PanDA, and has successfully delivered the functional and scaling performance required by PanDA, currently operating at a scale of half a million jobs per week, with much growth still to come. In this paper we describe the design and implementation of the PanDA database system, its architecture of MySQL servers deployed at BNL and CERN, backup strategy and monitoring tools. The system has been developed, thoroughly tested, and brought to production to provide highly reliable, scalable, flexible and available database services for ATLAS Monte Carlo production, reconstruction and physics analysis.

  16. Extending the ATLAS PanDA Workload Management System for New Big Data Applications

    CERN Document Server

    De, K; The ATLAS collaboration; Maeno, T; Nilsson, P; Panitkin, S; Vaniachine, A; Wenaus, T; Yu, D

    2013-01-01

    The LHC experiments are today at the leading edge of large scale distributed data-intensive computational science. The LHC's ATLAS experiment processes data volumes which are particularly extreme, over 130 PB to date, distributed worldwide at over of 120 sites. An important element in the success of the exciting physics results from ATLAS is the highly scalable integrated workflow and dataflow management afforded by the PanDA workload management system, used for all the distributed computing needs of the experiment. The PanDA design is not experiment specific and PanDA is now being extended to support other data intensive scientific applications. Alpha-Magnetic Spectrometer, an astro-particle experiment on the International Space Station, and the Compact Muon Solenoid, an LHC experiment, have successfully evaluated PanDA and are pursuing its adoption. PanDA was cited as an example of "a high performance, fault tolerant software for fast, scalable access to data repositories of many kinds" during the "Big Data...

  17. Experience with ATLAS MySQL PanDA database service

    Energy Technology Data Exchange (ETDEWEB)

    Smirnov, Y; Wlodek, T; Hover, J; Smith, J; Wenaus, T; Yu, D [Physics Department, Brookhaven National Laboratory, Upton, NY 11973-5000 (United States); De, K; Ozturk, N [Department of Physics, University of Texas at Arlington, Arlington, TX, 76019 (United States)

    2010-04-01

    The PanDA distributed production and analysis system has been in production use for ATLAS data processing and analysis since late 2005 in the US, and globally throughout ATLAS since early 2008. Its core architecture is based on a set of stateless web services served by Apache and backed by a suite of MySQL databases that are the repository for all PanDA information: active and archival job queues, dataset and file catalogs, site configuration information, monitoring information, system control parameters, and so on. This database system is one of the most critical components of PanDA, and has successfully delivered the functional and scaling performance required by PanDA, currently operating at a scale of half a million jobs per week, with much growth still to come. In this paper we describe the design and implementation of the PanDA database system, its architecture of MySQL servers deployed at BNL and CERN, backup strategy and monitoring tools. The system has been developed, thoroughly tested, and brought to production to provide highly reliable, scalable, flexible and available database services for ATLAS Monte Carlo production, reconstruction and physics analysis.

  18. Isoscalar giant resonances

    Energy Technology Data Exchange (ETDEWEB)

    Youngblood, D. H. [Texas A and M Univ., College Station (USA). Cyclotron Inst.; Ikegami, H.; Muraoka, M. [eds.

    1980-01-01

    The current status of the knowledges of giant quadrupole resonance (GQR), low energy octupole resonance (LEOR), and giant monopole resonance (GMR), is described. In the lowest order of multipole resonance, both isoscalar and isovector modes can occur. The characteristics of the GQR in light nuclei are apparent in the experimental result for Mg-24. All of the isoscalar E2 strength are known in Mg-24. The Goldhaber-Teller model is preferred over the Steinwedel-Jensen model for the giant dipole resonance (GDR) transition density. A few interesting and puzzling features have been seen in Pb-208. There is some conflict between inelastic alpha and electron scatterings. About LEOR, the RPA calculation of Liu and Brown was compared to the data for 3/sup -/ strength in Ca-40, Zr-90 and Pb-208. The calculation was employed the residual interaction of the Skyrme type. The agreement in Zr-90 was excellent. The effect of quadrupole deformation on the LEOR in Sm isotopes was large. The inelastic alpha scattering data on Al-27, Ca-40, Ti-48, Ni-58, Zn-64 and 66, Zr-90, Sn-116, 118, 120 and 124, Sm-144, 148 and 154, and Pb-208 were utilized in order to identify the GMR, and the GMR parameters were obtained. The GMR exhausting a large fraction of the sum rule was apparent in the nuclei with mass larger than 90. The splitting of the GDR and the broadening of the GQR in permanently deformed nuclei were established. The splitting of GMR was seen in Sm-154. The studies with heavy ions are also described.

  19. Large-scale, multi-compartment tests in PANDA for LWR-containment analysis and code validation

    International Nuclear Information System (INIS)

    Paladino, Domenico; Auban, Olivier; Zboray, Robert

    2006-01-01

    The large-scale thermal-hydraulic PANDA facility has been used for the last years for investigating passive decay heat removal systems and related containment phenomena relevant for next-generation and current light water reactors. As part of the 5. EURATOM framework program project TEMPEST, a series of tests was performed in PANDA to experimentally investigate the distribution of hydrogen inside the containment and its effect on the performance of the Passive Containment Cooling System (PCCS) designed for the Economic Simplified Boiling Water Reactor (ESBWR). In a postulated severe accident, a large amount of hydrogen could be released in the Reactor Pressure Vessel (RPV) as a consequence of the cladding Metal- Water (M-W) reaction and discharged together with steam to the Drywell (DW) compartment. In PANDA tests, hydrogen was simulated by using helium. This paper illustrates the results of a TEMPEST test performed in PANDA and named as Test T1.2. In Test T1.2, the gas stratification (steam-helium) patterns forming in the large-scale multi-compartment PANDA DW, and the effect of non-condensable gas (helium) on the overall behaviour of the PCCS were identified. Gas mixing and stratification in a large-scale multi-compartment system are currently being further investigated in PANDA in the frame of the OECD project SETH. The testing philosophy in this new PANDA program is to produce data for code validation in relation to specific phenomena, such as: gas stratification in the containment, gas transport between containment compartments, wall condensation, etc. These types of phenomena are driven by buoyant high-momentum injections (jets) and/or low momentum injection (plumes), depending on the transient scenario. In this context, the new SETH tests in PANDA are particularly valuable to produce an experimental database for code assessment. This paper also presents an overview of the PANDA SETH tests and the major improvements in instrumentation carried out in the PANDA

  20. Giant Ulcerative Dermatofibroma

    Directory of Open Access Journals (Sweden)

    Turgut Karlidag

    2013-01-01

    Full Text Available Dermatofibroma is a slowly growing common benign cutaneous tumor characterized by hard papules and nodules. The rarely seen erosions and ulcerations may cause difficulties in the diagnosis. Dermatofibrosarcoma protuberans, which is clinically and histopathologically of malignant character, displays difficulties in the diagnosis since it has similarities with basal cell carcinoma, epidermoid carcinoma, and sarcomas. Head and neck involvement is very rare. In this study, a giant dermatofibroma case, which is histopathologically, ulcerative dermatofibroma, the biggest lesion of the head and neck region and seen rarely in the literature that has characteristics similar to dermatofibrosarcoma protuberans, has been presented.

  1. GIANT PROSTHETIC VALVE THROMBUS

    Directory of Open Access Journals (Sweden)

    Prashanth Kumar

    2015-04-01

    Full Text Available Mechanical prosthetic valves are predisposed to bleeding, thrombosis & thromboembolic complications. Overall incidence of thromboembolic complications is 1% per year who are on oral anticoagulants, whereas bleeding complications incidence is 0.5% to 6.6% per year. 1, 2 Minimization of Scylla of thromboembolic & Charybdis of bleeding complication needs a balancing act of optimal antithrombotic therapy. We are reporting a case of middle aged male patient with prosthetic mitral valve presenting in heart failure. Patient had discontinued anticoagulants, as he had subdural hematoma in the past. He presented to our institute with a giant prosthetic valve thrombus.

  2. A Giant Urethral Calculus.

    Science.gov (United States)

    Sigdel, G; Agarwal, A; Keshaw, B W

    2014-01-01

    Urethral calculi are rare forms of urolithiasis. Majority of the calculi are migratory from urinary bladder or upper urinary tract. Primary urethral calculi usually occur in presence of urethral stricture or diverticulum. In this article we report a case of a giant posterior urethral calculus measuring 7x3x2 cm in a 47 years old male. Patient presented with acute retention of urine which was preceded by burning micturition and dribbling of urine for one week. The calculus was pushed in to the bladder through the cystoscope and was removed by suprapubic cystolithotomy.

  3. Giant paraganglioma in

    Directory of Open Access Journals (Sweden)

    Alka Gupta

    2017-07-01

    Full Text Available Paraganglioma is a rare neuroendocrine catecholamine producing tumour in childhood which arises outside the adrenal medulla. We present a 12 year old girl with giant paraganglioma with severe hypertension and end organ damage. Diagnosis was confirmed with 24 h urinary Vanillymandelic Acid (VMA and CT scan. Preoperative blood pressure was controlled with intravenous nitroprusside, and oral prazosin, amlodepine, labetalol and metoprolol. General anaesthesia with epidural analgesia was given. Intra operative blood pressure rise was managed with infusion of nitriglycerine (NTG, esmolol, nitroprusside and propofol.

  4. GIANT INTRACANALICULAR FIBROADENOMA

    Science.gov (United States)

    Smith, Clyn; Parsons, Robert J.; Bogart, William M.

    1951-01-01

    Five cases of giant intracanalicular fibroadenoma (“cystosarcoma phylloides”) were observed at one hospital in a period of three years. In a search of the literature, additional reports of breast tumors of this kind, not included in previous reviews, were noted. As there is record of 229 cases, it would appear that this rapidly growing benign tumor should be kept in mind in the diagnosis of masses in the breast. If removal is incomplete, there may be recurrence. Simple mastectomy is the treatment of choice. Radical mastectomy should be avoided. ImagesFigure 1Figure 2.Figure 3Figure 4Figure 5 PMID:14848732

  5. Feasibility studies of time-like proton electromagnetic form factors at overlinePANDA at FAIR

    Science.gov (United States)

    Singh, B.; Erni, W.; Krusche, B.; Steinacher, M.; Walford, N.; Liu, B.; Liu, H.; Liu, Z.; Shen, X.; Wang, C.; Zhao, J.; Albrecht, M.; Erlen, T.; Fink, M.; Heinsius, F.; Held, T.; Holtmann, T.; Jasper, S.; Keshk, I.; Koch, H.; Kopf, B.; Kuhlmann, M.; Kümmel, M.; Leiber, S.; Mikirtychyants, M.; Musiol, P.; Mustafa, A.; Pelizäus, M.; Pychy, J.; Richter, M.; Schnier, C.; Schröder, T.; Sowa, C.; Steinke, M.; Triffterer, T.; Wiedner, U.; Ball, M.; Beck, R.; Hammann, C.; Ketzer, B.; Kube, M.; Mahlberg, P.; Rossbach, M.; Schmidt, C.; Schmitz, R.; Thoma, U.; Urban, M.; Walther, D.; Wendel, C.; Wilson, A.; Bianconi, A.; Bragadireanu, M.; Caprini, M.; Pantea, D.; Patel, B.; Czyzycki, W.; Domagala, M.; Filo, G.; Jaworowski, J.; Krawczyk, M.; Lisowski, F.; Lisowski, E.; Michałek, M.; Poznański, P.; Płażek, J.; Korcyl, K.; Kozela, A.; Kulessa, P.; Lebiedowicz, P.; Pysz, K.; Schäfer, W.; Szczurek, A.; Fiutowski, T.; Idzik, M.; Mindur, B.; Przyborowski, D.; Swientek, K.; Biernat, J.; Kamys, B.; Kistryn, S.; Korcyl, G.; Krzemien, W.; Magiera, A.; Moskal, P.; Pyszniak, A.; Rudy, Z.; Salabura, P.; Smyrski, J.; Strzempek, P.; Wronska, A.; Augustin, I.; Böhm, R.; Lehmann, I.; Nicmorus Marinescu, D.; Schmitt, L.; Varentsov, V.; Al-Turany, M.; Belias, A.; Deppe, H.; Dzhygadlo, R.; Ehret, A.; Flemming, H.; Gerhardt, A.; Götzen, K.; Gromliuk, A.; Gruber, L.; Karabowicz, R.; Kliemt, R.; Krebs, M.; Kurilla, U.; Lehmann, D.; Löchner, S.; Lühning, J.; Lynen, U.; Orth, H.; Patsyuk, M.; Peters, K.; Saito, T.; Schepers, G.; Schmidt, C. J.; Schwarz, C.; Schwiening, J.; Täschner, A.; Traxler, M.; Ugur, C.; Voss, B.; Wieczorek, P.; Wilms, A.; Zühlsdorf, M.; Abazov, V.; Alexeev, G.; Arefiev, V. A.; Astakhov, V.; Barabanov, M. Yu.; Batyunya, B. V.; Davydov, Y.; Dodokhov, V. Kh.; Efremov, A.; Fechtchenko, A.; Fedunov, A. G.; Galoyan, A.; Grigoryan, S.; Koshurnikov, E. K.; Lobanov, Y. Yu.; Lobanov, V. I.; Makarov, A. F.; Malinina, L. V.; Malyshev, V.; Olshevskiy, A. G.; Perevalova, E.; Piskun, A. A.; Pocheptsov, T.; Pontecorvo, G.; Rodionov, V.; Rogov, Y.; Salmin, R.; Samartsev, A.; Sapozhnikov, M. G.; Shabratova, G.; Skachkov, N. B.; Skachkova, A. N.; Strokovsky, E. A.; Suleimanov, M.; Teshev, R.; Tokmenin, V.; Uzhinsky, V.; Vodopianov, A.; Zaporozhets, S. A.; Zhuravlev, N. I.; Zorin, A. G.; Branford, D.; Glazier, D.; Watts, D.; Böhm, M.; Britting, A.; Eyrich, W.; Lehmann, A.; Pfaffinger, M.; Uhlig, F.; Dobbs, S.; Seth, K.; Tomaradze, A.; Xiao, T.; Bettoni, D.; Carassiti, V.; Cotta Ramusino, A.; Dalpiaz, P.; Drago, A.; Fioravanti, E.; Garzia, I.; Savrie, M.; Akishina, V.; Kisel, I.; Kozlov, G.; Pugach, M.; Zyzak, M.; Gianotti, P.; Guaraldo, C.; Lucherini, V.; Bersani, A.; Bracco, G.; Macri, M.; Parodi, R. F.; Biguenko, K.; Brinkmann, K.; Di Pietro, V.; Diehl, S.; Dormenev, V.; Drexler, P.; Düren, M.; Etzelmüller, E.; Galuska, M.; Gutz, E.; Hahn, C.; Hayrapetyan, A.; Kesselkaul, M.; Kühn, W.; Kuske, T.; Lange, J. S.; Liang, Y.; Metag, V.; Nanova, M.; Nazarenko, S.; Novotny, R.; Quagli, T.; Reiter, S.; Rieke, J.; Rosenbaum, C.; Schmidt, M.; Schnell, R.; Stenzel, H.; Thöring, U.; Ullrich, M.; Wagner, M. N.; Wasem, T.; Wohlfahrt, B.; Zaunick, H.; Ireland, D.; Rosner, G.; Seitz, B.; Deepak, P. N.; Kulkarni, A.; Apostolou, A.; Babai, M.; Kavatsyuk, M.; Lemmens, P. J.; Lindemulder, M.; Loehner, H.; Messchendorp, J.; Schakel, P.; Smit, H.; Tiemens, M.; van der Weele, J. C.; Veenstra, R.; Vejdani, S.; Dutta, K.; Kalita, K.; Kumar, A.; Roy, A.; Sohlbach, H.; Bai, M.; Bianchi, L.; Büscher, M.; Cao, L.; Cebulla, A.; Dosdall, R.; Gillitzer, A.; Goldenbaum, F.; Grunwald, D.; Herten, A.; Hu, Q.; Kemmerling, G.; Kleines, H.; Lehrach, A.; Nellen, R.; Ohm, H.; Orfanitski, S.; Prasuhn, D.; Prencipe, E.; Pütz, J.; Ritman, J.; Schadmand, S.; Sefzick, T.; Serdyuk, V.; Sterzenbach, G.; Stockmanns, T.; Wintz, P.; Wüstner, P.; Xu, H.; Zambanini, A.; Li, S.; Li, Z.; Sun, Z.; Xu, H.; Rigato, V.; Isaksson, L.; Achenbach, P.; Corell, O.; Denig, A.; Distler, M.; Hoek, M.; Karavdina, A.; Lauth, W.; Liu, Z.; Merkel, H.; Müller, U.; Pochodzalla, J.; Sanchez, S.; Schlimme, S.; Sfienti, C.; Thiel, M.; Ahmadi, H.; Ahmed, S.; Bleser, S.; Capozza, L.; Cardinali, M.; Dbeyssi, A.; Deiseroth, M.; Feldbauer, F.; Fritsch, M.; Fröhlich, B.; Jasinski, P.; Kang, D.; Khaneft, D.; Klasen, R.; Leithoff, H. H.; Lin, D.; Maas, F.; Maldaner, S.; Martínez, M.; Michel, M.; Mora Espí, M. C.; Morales Morales, C.; Motzko, C.; Nerling, F.; Noll, O.; Pflüger, S.; Pitka, A.; Rodríguez Piñeiro, D.; Sanchez-Lorente, A.; Steinen, M.; Valente, R.; Weber, T.; Zambrana, M.; Zimmermann, I.; Fedorov, A.; Korjik, M.; Missevitch, O.; Boukharov, A.; Malyshev, O.; Marishev, I.; Balanutsa, V.; Balanutsa, P.; Chernetsky, V.; Demekhin, A.; Dolgolenko, A.; Fedorets, P.; Gerasimov, A.; Goryachev, V.; Chandratre, V.; Datar, V.; Dutta, D.; Jha, V.; Kumawat, H.; Mohanty, A. K.; Parmar, A.; Roy, B.; Sonika, G.; Fritzsch, C.; Grieser, S.; Hergemöller, A.; Hetz, B.; Hüsken, N.; Khoukaz, A.; Wessels, J. P.; Khosonthongkee, K.; Kobdaj, C.; Limphirat, A.; Srisawad, P.; Yan, Y.; Barnyakov, M.; Barnyakov, A. Yu.; Beloborodov, K.; Blinov, A. E.; Blinov, V. E.; Bobrovnikov, V. S.; Kononov, S.; Kravchenko, E. A.; Kuyanov, I. A.; Martin, K.; Onuchin, A. P.; Serednyakov, S.; Sokolov, A.; Tikhonov, Y.; Atomssa, E.; Kunne, R.; Marchand, D.; Ramstein, B.; van de Wiele, J.; Wang, Y.; Boca, G.; Costanza, S.; Genova, P.; Montagna, P.; Rotondi, A.; Abramov, V.; Belikov, N.; Bukreeva, S.; Davidenko, A.; Derevschikov, A.; Goncharenko, Y.; Grishin, V.; Kachanov, V.; Kormilitsin, V.; Levin, A.; Melnik, Y.; Minaev, N.; Mochalov, V.; Morozov, D.; Nogach, L.; Poslavskiy, S.; Ryazantsev, A.; Ryzhikov, S.; Semenov, P.; Shein, I.; Uzunian, A.; Vasiliev, A.; Yakutin, A.; Tomasi-Gustafsson, E.; Roy, U.; Yabsley, B.; Belostotski, S.; Gavrilov, G.; Izotov, A.; Manaenkov, S.; Miklukho, O.; Veretennikov, D.; Zhdanov, A.; Makonyi, K.; Preston, M.; Tegner, P.; Wölbing, D.; Bäck, T.; Cederwall, B.; Rai, A. K.; Godre, S.; Calvo, D.; Coli, S.; De Remigis, P.; Filippi, A.; Giraudo, G.; Lusso, S.; Mazza, G.; Mignone, M.; Rivetti, A.; Wheadon, R.; Balestra, F.; Iazzi, F.; Introzzi, R.; Lavagno, A.; Olave, J.; Amoroso, A.; Bussa, M. P.; Busso, L.; De Mori, F.; Destefanis, M.; Fava, L.; Ferrero, L.; Greco, M.; Hu, J.; Lavezzi, L.; Maggiora, M.; Maniscalco, G.; Marcello, S.; Sosio, S.; Spataro, S.; Birsa, R.; Bradamante, F.; Bressan, A.; Martin, A.; Calen, H.; Ikegami Andersson, W.; Johansson, T.; Kupsc, A.; Marciniewski, P.; Papenbrock, M.; Pettersson, J.; Schönning, K.; Wolke, M.; Galnander, B.; Diaz, J.; Pothodi Chackara, V.; Chlopik, A.; Kesik, G.; Melnychuk, D.; Slowinski, B.; Trzcinski, A.; Wojciechowski, M.; Wronka, S.; Zwieglinski, B.; Bühler, P.; Marton, J.; Steinschaden, D.; Suzuki, K.; Widmann, E.; Zmeskal, J.

    2016-10-01

    Simulation results for future measurements of electromagnetic proton form factors at overlinePANDA (FAIR) within the PandaRoot software framework are reported. The statistical precision with which the proton form factors can be determined is estimated. The signal channel bar{p}p→ e+e- is studied on the basis of two different but consistent procedures. The suppression of the main background channel, i.e. bar{p}p→ π+π-, is studied. Furthermore, the background versus signal efficiency, statistical and systematical uncertainties on the extracted proton form factors are evaluated using two different procedures. The results are consistent with those of a previous simulation study using an older, simplified framework. However, a slightly better precision is achieved in the PandaRoot study in a large range of momentum transfer, assuming the nominal beam conditions and detector performance.

  6. PanDA for ATLAS Distributed Computing in the Next Decade

    CERN Document Server

    Barreiro Megino, Fernando Harald; The ATLAS collaboration

    2016-01-01

    The Production and Distributed Analysis (PanDA) system has been developed to meet ATLAS production and analysis requirements for a data-driven workload management system capable of operating at the Large Hadron Collider (LHC) data processing scale. Heterogeneous resources used by the ATLAS experiment are distributed worldwide at hundreds of sites, thousands of physicists analyse the data remotely, the volume of processed data is beyond the exabyte scale, dozens of scientific applications are supported, while data processing requires more than a few billion hours of computing usage per year. PanDA performed very well over the last decade including the LHC Run 1 data taking period. However, it was decided to upgrade the whole system concurrently with the LHC’s first long shutdown in order to cope with rapidly changing computing infrastructure. After two years of reengineering efforts, PanDA has embedded capabilities for fully dynamic and flexible workload management. The static batch job paradigm was discarde...

  7. PanDA for ATLAS distributed computing in the next decade

    CERN Document Server

    AUTHOR|(SzGeCERN)643806; The ATLAS collaboration; De, Kaushik; Klimentov, Alexei; Maeno, Tadashi; Nilsson, Paul; Oleynik, Danila; Padolski, Siarhei; Panitkin, Sergey; Wenaus, Torre

    2017-01-01

    The Production and Distributed Analysis (PanDA) system has been developed to meet ATLAS production and analysis requirements for a data-driven workload management system capable of operating at the Large Hadron Collider (LHC) data processing scale. Heterogeneous resources used by the ATLAS experiment are distributed worldwide at hundreds of sites, thousands of physicists analyse the data remotely, the volume of processed data is beyond the exabyte scale, dozens of scientific applications are supported, while data processing requires more than a few billion hours of computing usage per year. PanDA performed very well over the last decade including the LHC Run 1 data taking period. However, it was decided to upgrade the whole system concurrently with the LHC’s first long shutdown in order to cope with rapidly changing computing infrastructure. After two years of reengineering efforts, PanDA has embedded capabilities for fully dynamic and flexible workload management. The static batch job paradigm was discarde...

  8. Feasibility studies of time-like proton electromagnetic form factors at PANDA at FAIR

    Energy Technology Data Exchange (ETDEWEB)

    Singh, B. [Aligarth Muslim Univ., Aligarth (India). Physics Dept.; Erni, W.; Krusche, B. [Basel Univ. (Switzerland); Collaboration: The PANDA Collaboration; and others

    2016-10-15

    Simulation results for future measurements of electromagnetic proton form factors at PANDA(FAIR) within the PandaRoot software framework are reported. The statistical precision with which the proton form factors can be determined is estimated. The signal channel anti pp → e{sup +}e{sup -} is studied on the basis of two different but consistent procedures. The suppression of the main background channel, i.e. anti pp → π{sup +}π{sup -}, is studied. Furthermore, the background versus signal efficiency, statistical and systematical uncertainties on the extracted proton form factors are evaluated using two different procedures. The results are consistent with those of a previous simulation study using an older, simplified framework. However, a slightly better precision is achieved in the PandaRoot study in a large range of momentum transfer, assuming the nominal beam conditions and detector performance. (orig.)

  9. First complete genome sequence of parainfluenza virus 5 isolated from lesser panda.

    Science.gov (United States)

    Zhai, Jun-Qiong; Zhai, Shao-Lun; Lin, Tao; Liu, Jian-Kui; Wang, He-Xing; Li, Bing; Zhang, He; Zou, Shu-Zhan; Zhou, Xia; Wu, Meng-Fan; Chen, Wu; Luo, Man-Lin

    2017-05-01

    Parainfluenza virus 5 (PIV5) is widespread in mammals and humans. Up to now, there is little information about PIV5 infection in lesser pandas. In this study, a PIV5 variant (named ZJQ-221) was isolated from a lesser panda with respiratory disease in Guangzhou zoo in Guangdong province, southern China. The full-length genome of ZJQ-221 was found to be 15,246 nucleotides and consisted of seven non-overlapping genes encoding eight proteins (i.e., NP, V, P, M, F, SH, HN and L). Sequence alignment and genetic analysis revealed that ZJQ-221 shared a close relationship with a PIV5 strain of canine-origin (1168-1) from South Korea. The findings of this study confirm the presence of PIV5 in lesser panda and indicate this mammal as a possible natural reservoir. Furthermore they highlight the urgent need to strengthen viral surveillance and control of PIV5 in zoo animals.

  10. Integration Of PanDA Workload Management System With Supercomputers for ATLAS

    CERN Document Server

    Oleynik, Danila; The ATLAS collaboration; De, Kaushik; Wenaus, Torre; Maeno, Tadashi; Barreiro Megino, Fernando Harald; Nilsson, Paul; Guan, Wen; Panitkin, Sergey

    2016-01-01

    The Large Hadron Collider (LHC), operating at the international CERN Laboratory in Geneva, Switzerland, is leading Big Data driven scientific explorations. Experiments at the LHC explore the fundamental nature of matter and the basic forces that shape our universe, and were recently credited for the discovery of a Higgs boson. ATLAS, one of the largest collaborations ever assembled in the sciences, is at the forefront of research at the LHC. To address an unprecedented multi-petabyte data processing challenge, the ATLAS experiment is relying on a heterogeneous distributed computational infrastructure. The ATLAS experiment uses PanDA (Production ANd Distributed Analysis system) Workload Management System for managing the workflow for all data processing on over 150 data centers. Through PanDA, ATLAS physicists see a single computing facility that enables rapid scientific breakthroughs for the experiment, even though the data centers are physically scattered all over the world. While PanDA currently uses more t...

  11. Simulation and reconstruction of photon patterns in the PANDA 3D Disc DIRC

    International Nuclear Information System (INIS)

    Merle, O; Düren, M; Föhl, K; Hayrapetyan, A; Koch, P; Kreutzfeldt, K; Kröck, B; Sporleder, M; Stöckmann, N; Zühlsdorf, M

    2012-01-01

    The PANDA Disc DIRC is a novel type of Cherenkov detector, being developed to improve the charged particle identification of the upcoming PANDA experiment at the future FAIR facility. The detector has to cover the endcap region of the target spectrometer, resulting in a geometry that by now has never been applied to a DIRC detector. Additional complications are implied by tight space constraints at the foreseen position, interaction rates of 20 MHz up to 50 MHz and the experiments trigger-less readout scheme. To cope with the lack of experience, the development of detector concepts is driven by the development of computer simulations and dedicated reconstruction methods. The performance analysis of a preceding detector concept, presented at the DIRC workshop in 2009, showed several weaknesses which have been eliminated by revising the detector design. This publication summarizes the current status of the software, the reconstruction method and resulting detector performance of the improved design: the PANDA 3D Disc DIRC.

  12. gLExec Integration with the ATLAS PanDA Workload Management System

    CERN Document Server

    Karavakis, Edward; Campana, Simone; De, Kaushik; Di Girolamo, Alessandro; Litmaath, Maarten; Maeno, Tadashi; Medrano Llamas, Ramon; Nilsson, Paul; Wenaus, Torre

    2015-01-01

    ATLAS user jobs are executed on Worker Nodes (WNs) by pilots sent to sites by pilot factories. This paradigm serves to allow a high job reliability and although it has clear advantages, such as making the working environment homogeneous, the approach presents security and traceability challenges. To address these challenges, gLExec can be used to let the payloads for each user be executed under a different UNIX user id that uniquely identifies the ATLAS user. This paper describes the recent improvements and evolution of the security model within the ATLAS PanDA system, including improvements in the PanDA pilot, in the PanDA server and their integration with MyProxy, a credential caching system that entitles a person or a service to act in the name of the issuer of the credential. Finally, it presents results from ATLAS user jobs running with gLExec and describes the deployment campaign within ATLAS.

  13. Feasibility studies of time-like proton electromagnetic form factors at PANDA at FAIR

    CERN Document Server

    Singh, B.; Krusche, B.; Steinacher, M.; Walford, N.; Liu, B.; Liu, H.; Liu, Z.; Shen, X.; Wang, C.; Zhao, J.; Albrecht, M.; Erlen, T.; Fink, M.; Heinsius, F.; Held, T.; Holtmann, T.; Jasper, S.; Keshk, I.; Koch, H.; Kopf, B.; Kuhlmann, M.; Kümmel, M.; Leiber, S.; Mikirtychyants, M.; Musiol, P.; Mustafa, A.; Pelizäus, M.; Pychy, J.; Richter, M.; Schnier, C.; Schröder, T.; Sowa, C.; Steinke, M.; Triffterer, T.; Wiedner, U.; Ball, M.; Beck, R.; Hammann, C.; Ketzer, B.; Kube, M.; Mahlberg, P.; Rossbach, M.; Schmidt, C.; Schmitz, R.; Thoma, U.; Urban, M.; Walther, D.; Wendel, C.; Wilson, A.; Bianconi, A.; Bragadireanu, M.; Caprini, M.; Pantea, D.; Patel, B.; Czyzycki, W.; Domagala, M.; Filo, G.; Jaworowski, J.; Krawczyk, M.; Lisowski, F.; Lisowski, E.; Michałek, M.; Poznański, P.; Płażek, J.; Korcyl, K.; Kozela, A.; Kulessa, P.; Lebiedowicz, P.; Pysz, K.; Schäfer, W.; Szczurek, A.; Fiutowski, T.; Idzik, M.; Mindur, B.; Przyborowski, D.; Swientek, K.; Biernat, J.; Kamys, B.; Kistryn, S.; Korcyl, G.; Krzemien, W.; Magiera, A.; Moskal, P.; Pyszniak, A.; Rudy, Z.; Salabura, P.; Smyrski, J.; Strzempek, P.; Wronska, A.; Augustin, I.; Böhm, R.; Lehmann, I.; Marinescu, D. Nicmorus; Schmitt, L.; Varentsov, V.; Al-Turany, M.; Belias, A.; Deppe, H.; Dzhygadlo, R.; Ehret, A.; Flemming, H.; Gerhardt, A.; Götzen, K.; Gromliuk, A.; Gruber, L.; Karabowicz, R.; Kliemt, R.; Krebs, M.; Kurilla, U.; Lehmann, D.; Löchner, S.; Lühning, J.; Lynen, U.; Orth, H.; Patsyuk, M.; Peters, K.; Saito, T.; Schepers, G.; Schmidt, C.J.; Schwarz, C.; Schwiening, J.; Täschner, A.; Traxler, M.; Ugur, C.; Voss, B.; Wieczorek, P.; Wilms, A.; Zühlsdorf, M.; Abazov, V.; Alexeev, G.; Arefiev, V.A.; Astakhov, V.; Barabanov, M. Yu.; Batyunya, B.V.; Davydov, Y.; Dodokhov, V. Kh.; Efremov, A.; Fechtchenko, A.; Fedunov, A.G.; Galoyan, A.; Grigoryan, S.; Koshurnikov, E.K.; Lobanov, Y. Yu.; Lobanov, V.I.; Makarov, A.F.; Malinina, L.V.; Malyshev, V.; Olshevskiy, A.G.; Perevalova, E.; Piskun, A.A.; Pocheptsov, T.; Pontecorvo, G.; Rodionov, V.; Rogov, Y.; Salmin, R.; Samartsev, A.; Sapozhnikov, M.G.; Shabratova, G.; Skachkov, N.B.; Skachkova, A.N.; Strokovsky, E.A.; Suleimanov, M.; Teshev, R.; Tokmenin, V.; Uzhinsky, V.; Vodopianov, A.; Zaporozhets, S.A.; Zhuravlev, N.I.; Zorin, A.G.; Branford, D.; Glazier, D.; Watts, D.; Böhm, M.; Britting, A.; Eyrich, W.; Lehmann, A.; Pfaffinger, M.; Uhlig, F.; Dobbs, S.; Seth, K.; Tomaradze, A.; Xiao, T.; Bettoni, D.; Carassiti, V.; Cotta Ramusino, A.; Dalpiaz, P.; Drago, A.; Fioravanti, E.; Garzia, I.; Savrie, M.; Akishina, V.; Kisel, I.; Kozlov, G.; Pugach, M.; Zyzak, M.; Gianotti, P.; Guaraldo, C.; Lucherini, V.; Bersani, A.; Bracco, G.; Macri, M.; Parodi, R.F.; Biguenko, K.; Brinkmann, K.; Di Pietro, V.; Diehl, S.; Dormenev, V.; Drexler, P.; Düren, M.; Etzelmüller, E.; Galuska, M.; Gutz, E.; Hahn, C.; Hayrapetyan, A.; Kesselkaul, M.; Kühn, W.; Kuske, T.; Lange, J.S.; Liang, Y.; Metag, V.; Nanova, M.; Nazarenko, S.; Novotny, R.; Quagli, T.; Reiter, S.; Rieke, J.; Rosenbaum, C.; Schmidt, M.; Schnell, R.; Stenzel, H.; Thöring, U.; Ullrich, M.; Wagner, M.N.; Wasem, T.; Wohlfahrt, B.; Zaunick, H.; Ireland, D.; Rosner, G.; Seitz, B.; Deepak, P.N.; Kulkarni, A.; Apostolou, A.; Babai, M.; Kavatsyuk, M.; Lemmens, P.J.; Lindemulder, M.; Loehner, H.; Messchendorp, J.; Schakel, P.; Smit, H.; Tiemens, M.; van der Weele, J.C.; Veenstra, R.; Vejdani, S.; Dutta, K.; Kalita, K.; Kumar, A.; Roy, A.; Sohlbach, H.; Bai, M.; Bianchi, L.; Büscher, M.; Cao, L.; Cebulla, A.; Dosdall, R.; Gillitzer, A.; Goldenbaum, F.; Grunwald, D.; Herten, A.; Hu, Q.; Kemmerling, G.; Kleines, H.; Lehrach, A.; Nellen, R.; Ohm, H.; Orfanitski, S.; Prasuhn, D.; Prencipe, E.; Pütz, J.; Ritman, J.; Schadmand, S.; Sefzick, T.; Serdyuk, V.; Sterzenbach, G.; Stockmanns, T.; Wintz, P.; Wüstner, P.; Xu, H.; Zambanini, A.; Li, S.; Li, Z.; Sun, Z.; Rigato, V.; Isaksson, L.; Achenbach, P.; Corell, O.; Denig, A.; Distler, M.; Hoek, M.; Karavdina, A.; Lauth, W.; Merkel, H.; Müller, U.; Pochodzalla, J.; Sanchez, S.; Schlimme, S.; Sfienti, C.; Thiel, M.; Ahmadi, H.; Ahmed, S.; Bleser, S.; Capozza, L.; Cardinali, M.; Dbeyssi, A.; Deiseroth, M.; Feldbauer, F.; Fritsch, M.; Fröhlich, B.; Jasinski, P.; Kang, D.; Khaneft, D.; Klasen, R.; Leithoff, H.H.; Lin, D.; Maas, F.; Maldaner, S.; Marta, M.; Michel, M.; Espí, M. C. Mora; Morales Morales, C.; Motzko, C.; Nerling, F.; Noll, O.; Pflüger, S.; Pitka, A.; Piñeiro, D. Rodríguez; Sanchez-Lorente, A.; Steinen, M.; Valente, R.; Weber, T.; Zambrana, M.; Zimmermann, I.; Fedorov, A.; Korjik, M.; Missevitch, O.; Boukharov, A.; Malyshev, O.; Marishev, I.; Balanutsa, V.; Balanutsa, P.; Chernetsky, V.; Demekhin, A.; Dolgolenko, A.; Fedorets, P.; Gerasimov, A.; Goryachev, V.; Chandratre, V.; Datar, V.; Dutta, D.; Jha, V.; Kumawat, H.; Mohanty, A.K.; Parmar, A.; Roy, B.; Sonika, G.; Fritzsch, C.; Grieser, S.; Hergemöller, A.; Hetz, B.; Hüsken, N.; Khoukaz, A.; Wessels, J.P.; Khosonthongkee, K.; Kobdaj, C.; Limphirat, A.; Srisawad, P.; Yan, Y.; Barnyakov, M.; Barnyakov, A. Yu.; Beloborodov, K.; Blinov, A.E.; Blinov, V.E.; Bobrovnikov, V.S.; Kononov, S.; Kravchenko, E.A.; Kuyanov, I.A.; Martin, K.; Onuchin, A.P.; Serednyakov, S.; Sokolov, A.; Tikhonov, Y.; Atomssa, E.; Kunne, R.; Marchand, D.; Ramstein, B.; van de Wiele, J.; Wang, Y.; Boca, G.; Costanza, S.; Genova, P.; Montagna, P.; Rotondi, A.; Abramov, V.; Belikov, N.; Bukreeva, S.; Davidenko, A.; Derevschikov, A.; Goncharenko, Y.; Grishin, V.; Kachanov, V.; Kormilitsin, V.; Levin, A.; Melnik, Y.; Minaev, N.; Mochalov, V.; Morozov, D.; Nogach, L.; Poslavskiy, S.; Ryazantsev, A.; Ryzhikov, S.; Semenov, P.; Shein, I.; Uzunian, A.; Vasiliev, A.; Yakutin, A.; Tomasi-Gustafsson, E.; Roy, U.; Yabsley, B.; Belostotski, S.; Gavrilov, G.; Izotov, A.; Manaenkov, S.; Miklukho, O.; Veretennikov, D.; Zhdanov, A.; Makonyi, K.; Preston, M.; Tegner, P.; Wölbing, D.; Bäck, T.; Cederwall, B.; Rai, A.K.; Godre, S.; Calvo, D.; Coli, S.; De Remigis, P.; Filippi, A.; Giraudo, G.; Lusso, S.; Mazza, G.; Mignone, M.; Rivetti, A.; Wheadon, R.; Balestra, F.; Iazzi, F.; Introzzi, R.; Lavagno, A.; Olave, J.; Amoroso, A.; Bussa, M.P.; Busso, L.; De Mori, F.; Destefanis, M.; Fava, L.; Ferrero, L.; Greco, M.; Hu, J.; Lavezzi, L.; Maggiora, M.; Maniscalco, G.; Marcello, S.; Sosio, S.; Spataro, S.; Birsa, R.; Bradamante, F.; Bressan, A.; Martin, A.; Calen, H.; Andersson, W. Ikegami; Johansson, T.; Kupsc, A.; Marciniewski, P.; Papenbrock, M.; Pettersson, J.; Schönning, K.; Wolke, M.; Galnander, B.; Diaz, J.; Chackara, V. Pothodi; Chlopik, A.; Kesik, G.; Melnychuk, D.; Slowinski, B.; Trzcinski, A.; Wojciechowski, M.; Wronka, S.; Zwieglinski, B.; Bühler, P.; Marton, J.; Steinschaden, D.; Suzuki, K.; Widmann, E.; Zmeskal, J.

    2016-01-01

    The results of simulations for future measurements of electromagnetic form factors at \\PANDA (FAIR) within the PandaRoot software framework are reported. The statistical precision at which the proton form factors can be determined is estimated. The signal channel $\\bar p p \\to e^+ e^-$ is studied on the basis of two different but consistent procedures. The suppression of the main background channel, i.e. the $\\bar p p \\to \\pi^+ \\pi^-$, is studied. Furthermore, the background versus signal efficiency, statistic and systematic uncertainties on the extracted proton form factors are evaluated using to the two different procedures. The results are consistent with those of a previous simulation study using an older, simplified framework. However, a slightly better precision is achieved in the PandaRoot study in a large range of momentum transfer, assuming the nominal beam condition and detector performances.

  14. Evolution of the ATLAS PanDA Production and Distributed Analysis System

    International Nuclear Information System (INIS)

    Maeno, T; Wenaus, T; Fine, V; Potekhin, M; Panitkin, S; De, K; Nilsson, P; Stradling, A; Walker, R; Compostella, G

    2012-01-01

    The PanDA (Production and Distributed Analysis) system has been developed to meet ATLAS production and analysis requirements for a data-driven workload management system capable of operating at LHC data processing scale. PanDA has performed well with high reliability and robustness during the two years of LHC data-taking, while being actively evolved to meet the rapidly changing requirements for analysis use cases. We will present an overview of system evolution including automatic rebrokerage and reattempt for analysis jobs, adaptation for the CernVM File System, support for the multi-cloud model through which Tier-2 sites act as members of multiple clouds, pledged resource management and preferential brokerage, and monitoring improvements. We will also describe results from the analysis of two years of PanDA usage statistics, current issues, and plans for the future.

  15. Feasibility studies of time-like proton electromagnetic form factors at PANDA at FAIR

    International Nuclear Information System (INIS)

    Singh, B.

    2016-01-01

    Simulation results for future measurements of electromagnetic proton form factors at PANDA(FAIR) within the PandaRoot software framework are reported. The statistical precision with which the proton form factors can be determined is estimated. The signal channel anti pp → e + e - is studied on the basis of two different but consistent procedures. The suppression of the main background channel, i.e. anti pp → π + π - , is studied. Furthermore, the background versus signal efficiency, statistical and systematical uncertainties on the extracted proton form factors are evaluated using two different procedures. The results are consistent with those of a previous simulation study using an older, simplified framework. However, a slightly better precision is achieved in the PandaRoot study in a large range of momentum transfer, assuming the nominal beam conditions and detector performance. (orig.)

  16. Integration of PanDA workload management system with Titan supercomputer at OLCF

    Science.gov (United States)

    De, K.; Klimentov, A.; Oleynik, D.; Panitkin, S.; Petrosyan, A.; Schovancova, J.; Vaniachine, A.; Wenaus, T.

    2015-12-01

    The PanDA (Production and Distributed Analysis) workload management system (WMS) was developed to meet the scale and complexity of LHC distributed computing for the ATLAS experiment. While PanDA currently distributes jobs to more than 100,000 cores at well over 100 Grid sites, the future LHC data taking runs will require more resources than Grid computing can possibly provide. To alleviate these challenges, ATLAS is engaged in an ambitious program to expand the current computing model to include additional resources such as the opportunistic use of supercomputers. We will describe a project aimed at integration of PanDA WMS with Titan supercomputer at Oak Ridge Leadership Computing Facility (OLCF). The current approach utilizes a modified PanDA pilot framework for job submission to Titan's batch queues and local data management, with light-weight MPI wrappers to run single threaded workloads in parallel on Titan's multicore worker nodes. It also gives PanDA new capability to collect, in real time, information about unused worker nodes on Titan, which allows precise definition of the size and duration of jobs submitted to Titan according to available free resources. This capability significantly reduces PanDA job wait time while improving Titan's utilization efficiency. This implementation was tested with a variety of Monte-Carlo workloads on Titan and is being tested on several other supercomputing platforms. Notice: This manuscript has been authored, by employees of Brookhaven Science Associates, LLC under Contract No. DE-AC02-98CH10886 with the U.S. Department of Energy. The publisher by accepting the manuscript for publication acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes.

  17. Performance of the cluster-jet target for PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Hergemoeller, Ann-Katrin; Bonaventura, Daniel; Grieser, Silke; Hetz, Benjamin; Koehler, Esperanza; Khoukaz, Alfons [Institut fuer Kernphysik, Westfaelische Wilhelms-Universitaet Muenster, 48149 Muenster (Germany)

    2016-07-01

    The success of storage ring experiments strongly depends on the choice of the target. For this purpose, a very appropriate internal target for such an experiment is a cluster-jet target, which will be the first operated target at the PANDA experiment at FAIR. In this kind of target the cluster beam itself is formed due to the expansion of pre-cooled gases within a Laval nozzle and is prepared afterwards via two orifices, the skimmer and the collimator. The target prototype, operating successfully for years at the University of Muenster, provides routinely target thicknesses of more than 2 x 10{sup 15} (atoms)/(cm{sup 2}) in a distance of 2.1 m behind the nozzle. Based on the results of the performance of the cluster target prototype the final cluster-jet target source was designed and set into operation in Muenster as well. Besides the monitoring of the cluster beam itself and the thickness with two different monitoring systems at this target, investigations on the cluster mass via Mie scattering will be performed. In this presentation an overview of the cluster target design, its performance and the Mie scattering method are presented and discussed.

  18. PandaX-III neutrinoless double beta decay experiment

    Science.gov (United States)

    Wang, Shaobo; PandaX-III Collaboration

    2017-09-01

    The PandaX-III experiment uses high pressure Time Projection Chambers (TPCs) to search for neutrinoless double-beta decay of Xe-136 with high energy resolution and sensitivity at the China Jin-Ping underground Laboratory II (CJPL-II). Fine-pitch Microbulk Micromegas will be used for charge amplification and readout in order to reconstruct both the energy and track of the neutrinoless double-beta decay event. In the first phase of the experiment, the detector, which contains 200 kg of 90% Xe-136 enriched gas operated at 10 bar, will be immersed in a large water tank to ensure 5 m of water shielding. For the second phase, a ton-scale experiment with multiple TPCs will be constructed to improve the detection probability and sensitivity. A 20-kg scale prototype TPC with 7 Micromegas modules has been built to optimize the design of Micromegas readout module, study the energy calibration of TPC and develop algorithm of 3D track reconstruction.

  19. PANDA experiment and International Standard Problem for passive cooling systems for afterheat removal

    International Nuclear Information System (INIS)

    Yadigaroglu, G.; Aksan, N.S.

    1999-01-01

    In the context of OECD/NEA, Paul Scherrer Institut (PSI) is working on an International Standard Problem which is to provide information on the efficiency and use of computer program systems for passive afterheat removal systems. The PANDA test facility of PSI was designed for these investigations. A six-phase PANDA experiment provides a basis for pre-calculation and recalculation of selected phases covering a limited number of system-typical operating states and phenomena. The experiment was specified and carried out in the year under report [de

  20. Construction and analysis of a giant gartersnake (Thamnophis gigas) population projection model

    Science.gov (United States)

    Rose, Jonathan P.; Ersan, Julia S. M.; Wylie, Glenn D.; Casazza, Michael L.; Halstead, Brian J.

    2018-03-19

    The giant gartersnake (Thamnophis gigas) is a state and federally threatened species precinctive to California. The range of the giant gartersnake has contracted in the last century because its wetland habitat has been drained for agriculture and development. As a result of this habitat alteration, giant gartersnakes now largely persist in and near rice agriculture in the Sacramento Valley, because the system of canals that conveys water for rice growing approximates historical wetland habitat. Many aspects of the demography of giant gartersnakes are unknown, including how individuals grow throughout their life, how size influences reproduction, and how survival varies over time and among populations. We studied giant gartersnakes throughout the Sacramento Valley of California from 1995 to 2016 using capture-mark-recapture to study the growth, reproduction, and survival of this threatened species. We then use these data to construct an Integral Projection Model, and analyze this demographic model to understand which vital rates contribute most to the growth rate of giant gartersnake populations. We find that giant gartersnakes exhibit indeterminate growth; growth slows as individuals’ age. Fecundity, probability of reproduction, and survival all increase with size, although survival may decline for the largest female giant gartersnakes. The population growth rate of giant gartersnakes is most influenced by the survival and growth of large adult females, and the size at which 1 year old recruits enter the population. Our results indicate that management actions benefitting these influential demographic parameters will have the greatest positive effect on giant gartersnake population growth rates, and therefore population persistence. This study informs the conservation and management of giant gartersnakes and their habitat, and illustrates the effectiveness of hierarchical Bayesian models for the study of rare and elusive species.

  1. Cognitive screening in Parkinson's disease: Comparison of the Parkinson Neuropsychometric Dementia Assessment (PANDA) with 3 other short scales.

    Science.gov (United States)

    Gasser, A-I; Calabrese, P; Kalbe, E; Kessler, J; Rossier, P

    2016-02-01

    Cognitive screening is crucial in Parkinson's disease (PD). However, there is still a lack of short tools in French. In this study, we aimed to compare the Parkinson Neuropsychometric Dementia Assessment (PANDA) with the Mini Mental Parkinson (MMP), the Mini Mental State Examination (MMSE) and the Clock Test in French-speaking patients. We also aimed to propose cut-off scores for cognitive impairment and dementia for the French language version of the PANDA. Fifty-one patients with PD took the PANDA, the MMSE, the MMP, and the Clock Test. They also underwent extensive neuropsychological testing by a neuropsychologist who was blinded to the above-mentioned screening test results. Patients were classified as either having normal cognition (n=15), mild cognitive impairment (n=20) or dementia (n=16). When compared with the three other screening tools, the PANDA exhibited the highest area under the curve (AUC) for both cognitive disorders and dementia. Using the cut-off scores proposed for the German version, the PANDA had 94% specificity and 100% sensitivity for dementia and 100% and 72%, respectively for cognitive disorders. In our study, the PANDA exhibited a higher discriminative power than the three other tests in detecting cognitive disorders and dementia. In PD patients, the PANDA should thus be considered for the detection of cognitive impairment in routine clinical practice. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

  2. Recurrent giant juvenile fibroadenoma

    Directory of Open Access Journals (Sweden)

    Kathryn S. King

    2017-11-01

    Full Text Available Breast masses in children, though rare, present a difficult clinical challenge as they can represent a wide variety of entities from benign fibroadenomas to phyllodes tumors. Rapidly growing or recurrent masses can be particularly concerning to patients, families and physicians alike. Clinical examination and conventional imaging modalities are not efficacious in distinguishing between different tumor types and surgical excision is often recommended for both final diagnosis and for treatment of large or rapidly growing masses. While surgical excision can result in significant long-term deformity of the breast there are some surgical techniques that can be used to limit deformity and/or aid in future reconstruction. Here we present a case of recurrent giant juvenile fibroadenoma with a review of the clinical presentation, diagnostic tools and treatment options.

  3. Hadron excitation of giant resonances

    International Nuclear Information System (INIS)

    Morsch, H.-P.

    1985-01-01

    A review is given on giant resonance studies in heavy nuclei using scattering of different hadronic probes. Concerning isoscalar giant resonances compression modes are discussed with the possibility to obtain more detailed structure information. From detailed studies of α scattering the distribution of isoscalar strengths of multipolarity up to L=6 was obtained. Some recent aspects of heavy ion excitation of collective modes are mentioned. The possibility to study isovector giant resonances in hadron charge exchange reactions is discussed. Finally, a comparison is made between α and 200 MeV proton scattering from which isoscalar and spin-isospin continuum response are extracted. (orig.)

  4. Maxillomandibular giant osteosclerotic lesions

    Directory of Open Access Journals (Sweden)

    Constantino LEDESMA-MONTES

    2018-06-01

    Full Text Available Abstract Giant Osteosclerotic Lesions (GOLs are a group of rarely reported intraosseous lesions. Their precise diagnosis is important since they can be confused with malignant neoplasms. Objective This retrospective study aimed to record and analyze the clinical and radiographic Giant Osteosclerotic Lesions (GOLs detected in the maxillomandibular area of patients attending to our institution. Materials and Methods: Informed consent from the patients was obtained and those cases of 2.5 cm or larger lesions with radiopaque or mixed (radiolucid-radiopaque appearance located in the maxillofacial bones were selected. Assessed parameters were: age, gender, radiographic aspect, shape, borders, size, location and relations to roots. Lesions were classified as radicular, apical, interradicular, interradicular-apical, radicular-apical or located in a previous teeth extraction area. Additionally, several osseous and dental developmental alterations (DDAs were assessed. Results Seventeen radiopacities in 14 patients were found and were located almost exclusively in mandible and were two types: idiopathic osteosclerosis and condensing osteitis. GOLs were more frequent in females, and in the anterior and premolar zones. 94.2% of GOLs were qualified as idiopathic osteosclerosis and one case was condensing osteitis. All studied cases showed different osseous and dental developmental alterations (DDAs. The most common were: Microdontia, hypodontia, pulp stones, macrodontia and variations in the mental foramina. Conclusions GOLs must be differentiated from other radiopaque benign and malignant tumors. Condensing osteitis, was considered an anomalous osseous response induced by a chronic low-grade inflammatory stimulus. For development of idiopathic osteosclerosis, two possible mechanisms could be related. The first is modification of the normal turnover with excessive osseous deposition. The second mechanism will prevent the normal bone resorption, arresting the

  5. Ancylostoma ailuropodae sp. n. (Nematoda: Ancylostomatidae), a new hookworm parasite isolated from wild giant pandas in Southwest China

    Science.gov (United States)

    Hookworms belonging to the genus Ancylostoma cause ancylostomiasis, a disease of considerable concern in humans and domestic and wild animals. Molecular and epidemiological data support evidence for the zoonotic potential among species of Ancylostoma where transmission to humans is facilitated by ra...

  6. A reliable genetic technique for sex determination of giant panda (Ailuropoda melanoleuca) from non-invasively collected hair samples

    NARCIS (Netherlands)

    Durnin, Matthew E.; Palsboll, Per J.; Ryder, Oliver A.; McCullough, Dale R.

    Extractions from non-invasive hair samples usually yield low amounts of highly degraded DNA. Previously developed mammal molecular sexing methods were not designed with such sub-optimal conditions in mind. We developed a simple and reliable PCR-based sexing method aimed at degraded, low yield DNA

  7. Collective motion and giant resonances

    International Nuclear Information System (INIS)

    Wilhelmi, Z.; Kicinska-Habior, M.

    1984-01-01

    The report contains 15 papers devoted to problems of giant collective excitations of nuclei, heavy-ion induced reactions and their bearing on various aspects of nuclear structure. In some of them the numerical data are given. (A.S.)

  8. Fast SiPM Readout of the PANDA TOF Detector

    International Nuclear Information System (INIS)

    Böhm, M.; Lehmann, A.; Motz, S.; Uhlig, F.

    2016-01-01

    For the identification of low momentum charged particles and for event timing purposes a barrel Time-of-Flight (TOF) detector surrounding the interaction point is planned for the PANDA experiment at FAIR . Since the boundary conditions in terms of available radial space and radiation length are quite strict the favored layout is a hodoscope composed of several thousand small scintillating tiles (SciTils) read out by silicon photomultipliers (SiPMs). A time resolution of well below 100 ps is aimed for. With the originally proposed 30 × 30 × 5 mm 3 SciTils read out by two single 3 × 3 mm 2 SiPMs at the rims of the scintillator the targeted time resolution can be just reached, but with a considerable position dependence across the scintillator surface. In this paper we discuss other design options to further improve the time resolution and its homogeneity. It will be shown that wide scintillating rods (SciRods) with a size of, e.g., 50 × 30 × 5 mm 3 or longer and read out at opposite sides by a chain of four serially connected SiPMs a time resolution down to 50 ps can be reached without problems. In addition, the position dependence of the time resolution is negligible. These SciRods were tested in the laboratory with electrons of a 90 Sr source and under real experimental conditions in a particle beam at CERN. The measured time resolutions using fast BC418 or BC420 plastic scintillators wrapped in aluminum foil were consistently between 45 and 75 ps dependent on the SciRod design. This is a significant improvement compared to the original SciTil layout.

  9. The next generation PanDA Pilot for and beyond the ATLAS experiment

    CERN Document Server

    Nilsson, Paul; The ATLAS collaboration

    2018-01-01

    The Production and Distributed Analysis system (PanDA) is a pilot-based workload management system that was originally designed for the ATLAS Experiment at the LHC to operate on grid sites. Since the coming LHC data taking runs will require more resources than grid computing alone can provide, the various LHC experiments are engaged in an ambitious program to extend the computing model to include opportunistically used resources such as High Performance Computers (HPCs), clouds and volunteer computers. To this end, PanDA is being extended beyond grids and ATLAS to be used on the new types of resources as well as by other experiments. A new key component is being developed, the next generation PanDA Pilot (Pilot 2). Pilot 2 is a complete rewrite of the original PanDA Pilot which has been used in the ATLAS Experiment for over a decade. The new Pilot architecture follows a component-based approach which improves system flexibility, enables a clear workflow control, evolves the system according to modern function...

  10. Technical Design Report for the PANDA Solenoid and Dipole Spectrometer Magnets

    CERN Document Server

    Erni, W; Krusche, B; Steinacher, M; Heng, Y; Liu, Z; Liu, H; Shen, X; Wang, O; Xu, H; Becker, J; Feldbauer, F; Heinsius, F -H; Held, T; Koch, H; Kopf, B; Pelizaeus, M; Schröder, T; Steinke, M; Wiedner, U; Zhong, J; Bianconi, A; Bragadireanu, M; Pantea, D; Tudorache, A; Tudorache, V; De Napoli, M; Giacoppo, F; Raciti, G; Rapisarda, E; Sfienti, C; Bialkowski, E; Budzanowski, A; Czech, B; Kistryn, M; Kliczewski, S; Kozela, A; Kulessa, P; Pysz, K; Schäfer, W; Siudak, R; Szczurek, A; zycki, W Czy; Domagala, M; Hawryluk, M; Lisowski, E; Lisowski, F; Wojnar, L; Gil, D; Hawranek, P; Kamys, B; Kistryn, St; Korcyl, K; Krzemien, W; Magiera, A; Moskal, P; Rudy, Z; Salabura, P; Smyrski, J; Wronska, A; Al-Turany, M; Augustin, I; Deppe, H; Flemming, H; Gerl, J; Goetzen, K; Hohler, R; Lehmann, D; Lewandowski, B; Lühning, J; Maas, F; Mishra, D; Orth, H; Peters, K; Saitô, T; Schepers, G; Schmidt, C J; Schmitt, L; Schwarz, C; Voss, B; Wieczorek, P; Wilms, A; Brinkmann, K -T; Freiesleben, H; Jaekel, R; Kliemt, R; Wuerschig, T; Zaunick, H -G; Abazov, V M; Alexeev, G; Arefev, A; Astakhov, V I; Barabanov, M Yu; Batyunya, B V; Davydov, Yu I; Dodokhov, V Kh; Efremov, A A; Fedunov, A G; Feshchenko, A A; Galoyan, A S; Grigorian, S; Karmokov, A; Koshurnikov, E K; Kudaev, V Ch; Lobanov, V I; Lobanov, Yu Yu; Makarov, A F; Malinina, L V; Malyshev, V L; Mustafaev, G A; Olshevski, A; Pasyuk, M A; Perevalova, E A; Piskun, A A; Pocheptsov, T A; Pontecorvo, G; Rodionov, V K; Rogov, Yu N; Salmin, R A; Samartsev, A G; Sapozhnikov, M G; Shabratova, A; Shabratova, G S; Skachkova, A N; Skachkov, N B; Strokovsky, E A; Suleimanov, M K; Teshev, R Sh; Tokmenin, V V; Uzhinsky, V V; Vodopyanov, A S; Zaporozhets, S A; Zhuravlev, N I; Zorin, A G; Branford, D; Föhl, K; Glazier, D; Watts, D; Woods, P; Eyrich, W; Lehmann, A; Teufel, A; Dobbs, S; Metreveli, Z; Seth, K; Tann, B; Tomaradze, A G; Bettoni, D; Carassiti, V; Cecchi, A; Dalpiaz, P; Fioravanti, E; Garzia, I; Negrini, M; Savri`e, M; Stancari, G; Dulach, B; Gianotti, P; Guaraldo, C; Lucherini, V; Pace, E; Bersani, A; Macri, M; Marinelli, M; Parodi, R F; Brodski, I; Döring, W; Drexler, P; Düren, M; Gagyi-Palffy, Z; Hayrapetyan, A; Kotulla, M; Kühn, W; Lange, S; Liu, M; Metag, V; Nanova, M; Novotny, R; Salz, C; Schneider, J; Schoenmeier, P; Schubert, R; Spataro, S; Stenzel, H; Strackbein, C; Thiel, M; Thoering, U; Yang, S; Clarkson, T; Cowie, E; Downie, E; Hill, G; Hoek, M; Ireland, D; Kaiser, R; Keri, T; Lehmann, I; Livingston, K; Lumsden, S; MacGregor, D; McKinnon, B; Murray, M; Protopopescu, D; Rosner, G; Seitz, B; Yang, G; Babai, M; Biegun, A K; Bubak, A; Guliyev, E; Jothi, V S; Kavatsyuk, M; Löhner, H; Messchendorp, J; Smit, H; van der Weele, J C; García, F; Riska, D -O; Büscher, M; Dosdall, R; Dzhygadlo, R; Gillitzer, A; Grunwald, D; Jha, V; Kemmerling, G; Kleines, H; Lehrach, A; Maier, R; Mertens, M; Ohm, H; Prasuhn, D; Randriamalala, T; Ritman, J; Roeder, M; Stockmanns, T; Wintz, P; Wüstner, P; Kisiel, J; Li, S; Li, Z; Sun, Z; Xu, H; Fissum, S; Hansen, K; Isaksson, L; Lundin, M; Schröder, B; Achenbach, P; Espi, M C Mora; Pochodzalla, J; Sanchez, S; Sanchez-Lorente, A; Dormenev, V I; Fedorov, A A; Korzhik, M V; Missevitch, O V; Balanutsa, V; Chernetsky, V; Demekhin, A; Dolgolenko, A; Fedorets, P; Gerasimov, A; Goryachev, V; Boukharov, A; Malyshev, O; Marishev, I; Semenov, A; Hoeppner, C; Ketzer, B; Konorov, I; Mann, A; Neubert, S; Paul, S; Weitzel, Q; Khoukaz, A; Rausmann, T; Täschner, A; Wessels, J; Varma, R; Baldin, E; Kotov, K; Peleganchuk, S; Tikhonov, Yu; Boucher, J; Hennino, T; Kunne, R; Ong, S; Pouthas, J; Ramstein, B; Rosier, P; Sudol, M; Van de Wiele, J; Zerguerras, T; Dmowski, K; Korzeniewski, R; Przemyslaw, D; Slowinski, B; Boca, G; Braghieri, A; Costanza, S; Fontana, A; Genova, P; Lavezzi, L; Montagna, P; Rotondi, A; Belikov, N I; Davidenko, A M; Derevshchikov, A A; Goncharenko, Yu M; Grishin, V N; Kachanov, V A; Konstantinov, D A; Kormilitsin, V A; Kravtsov, V I; Matulenko, Yu A; Melnik, Y M; Meshchanin, A P; Minaev, N G; Mochalov, V V; Morozov, D A; Nogach, L V; Nurushev, S B; Ryazantsev, A V; Semenov, P A; Soloviev, L F; Uzunian, A V; Vasilev, A N; Yakutin, A E; Baeck, T; Cederwall, B; Bargholtz, C; Geren, L; Tegnér, P E; Belostotskii, S; Gavrilov, G; Itzotov, A; Kiselev, A; Kravchenko, P; Manaenkov, S; Miklukho, O; Naryshkin, Yu; Veretennikov, D; Vikhrov, V; Zhadanov, A; Fava, L; Panzieri, D; Alberto, D; Amoroso, A; Botta, E; Bressani, T; Bufalino, S; Bussa, M P; Busso, L; De Mori, F; Destefanis, M; Ferrero, L; Grasso, A; Greco, M; Kugathasan, T; Maggiora, M; Marcello, S; Serbanut, G; Sosio, S; Bertini, R; Calvo, D; Coli, S; De Remigis, P; Feliciello, A; Filippi, A; Giraudo, G; Mazza, G; Rivetti, A; Szymanska, K; Tosello, F; Wheadon, R; Morra, O; Agnello, M; Iazzi, F; Szymanska, K; Birsa, R; Bradamante, F; Bressan, A; Martin, A; Clement, H; Ekström, C; Calén, H; Grape, S; Hoeistad, B; Johansson, T; Kupsc, A; Marciniewski, P; Thomé, E; Zlomanczuk, Yu; Díaz, J; Ortiz, A; Borsuk, S; Chlopik, A; Guzik, Z; Kopec, J; Kozlovskii, T; Melnychuk, D; Plominski, M; Szewinski, J; Traczyk, K; Zwieglinski, B; Bühler, P; Gruber, A; Kienle, P; Marton, J; Widmann, E; Zmeskal, J

    2009-01-01

    This document is the Technical Design Report covering the two large spectrometer magnets of the PANDA detector set-up. It shows the conceptual design of the magnets and their anticipated performance. It precedes the tender and procurement of the magnets and, hence, is subject to possible modifications arising during this process.

  11. Next generation PanDA pilot for ATLAS and other experiments

    International Nuclear Information System (INIS)

    Nilsson, P; De, K; Megino, F Barreiro; Llamas, R Medrano; Bejar, J Caballero; Hover, J; Maeno, T; Wenaus, T; Love, P; Walker, R

    2014-01-01

    The Production and Distributed Analysis system (PanDA) has been in use in the ATLAS Experiment since 2005. It uses a sophisticated pilot system to execute submitted jobs on the worker nodes. While originally designed for ATLAS, the PanDA Pilot has recently been refactored to facilitate use outside of ATLAS. Experiments are now handled as plug-ins such that a new PanDA Pilot user only has to implement a set of prototyped methods in the plug-in classes, and provide a script that configures and runs the experiment-specific payload. We will give an overview of the Next Generation PanDA Pilot system and will present major features and recent improvements including live user payload debugging, data access via the Federated XRootD system, stage-out to alternative storage elements, support for the new ATLAS DDM system (Rucio), and an improved integration with glExec, as well as a description of the experiment-specific plug-in classes. The performance of the pilot system in processing LHC data on the OSG, LCG and Nordugrid infrastructures used by ATLAS will also be presented. We will describe plans for future development on the time scale of the next few years.

  12. Outbreak and genotyping of canine distemper virus in captive Siberian tigers and red pandas.

    Science.gov (United States)

    Zhang, He; Shan, Fen; Zhou, Xia; Li, Bing; Zhai, Jun-Qiong; Zou, Shu-Zhan; Wu, Meng-Fan; Chen, Wu; Zhai, Shao-Lun; Luo, Man-Lin

    2017-08-15

    In this study, four canine distemper virus (CDV) strains were isolated from captive Siberian tigers (Panthera tigris altaica) and red pandas (Ailurus fulgens) during two separate CDV outbreaks in a zoo in Guangdong province, China. Sequence alignment and phylogenetic analyses based on the full-length hemagglutinin (H) and fusion (F) genes showed that they were closely identical to genotype Asia-1. Prior to confirmation of CDV in Siberian tigers, to control spread of the disease, a live attenuated combination CDV vaccine was used among almost all carnivore animals except for red pandas in which another recombinant combination CDV vaccine was used. However, about two months later, CDV re-emerged and caused the death among red pandas. Based on the vaccination records, the live combination vaccine could be considered an ideal weapon against CDV in zoo carnivore animals. Although the recombinant combination CDV vaccine was safe for red pandas, its protection effectiveness remains to be further investigated. Moreover, according to the outbreak interval time and sequence characterization, we suspected that stray cats circulating in the zoo were the intermediate host, which contributed to CDV spread from stray dogs to zoo animals. This study revealed the importance of vaccination and biosecurity for zoo animals.

  13. The PASTA chip - A free-running readout ASIC for silicon strip sensors in PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Goerres, Andre; Stockmanns, Tobias; Ritman, James [Institut fuer Kernphysik, Forschungszentrum Juelich, Juelich (Germany); Rivetti, Angelo [INFN Sezione di Torino, Torino (Italy); Collaboration: PANDA-Collaboration

    2014-07-01

    The PANDA experiment is a multi purpose detector, investigating hadron physics in the charm quark mass regime. It is one of the main experiments at the future FAIR accelerator facility, using pp annihilations from a 1.5-15 GeV/c anti-proton beam. Because of the broad physics spectrum and the similarity of event and background signals, PANDA does not rely on a hardware-level trigger decision. The innermost of PANDA's sub-systems is the Micro Vertex Detector (MVD), consisting of silicon pixel and strip sensors. The latter will be read out by a specialized, free-running readout front-end called PANDA Strip ASIC (PASTA). It has to face a high event rate of up to 40 kHz/ch in an radiation-intense environment. To fulfill the MVD's requirements, it has to give accurate timing information to incoming events (<10 ns) and determine the collected charge with an 8-bit precision. The design has to meet cooling and placing restrictions, leading to a very low power consumption (<4 mW/ch) and limited dimensions. Therefore, a simple, time-based readout approach is chosen. In this talk, the conceptual design of the front-end is presented.

  14. The PASTA chip. A free-running readout ASIC for silicon strip sensors in PANDA

    Energy Technology Data Exchange (ETDEWEB)

    Goerres, Andre; Stockmanns, Tobias; Ritman, James [Forschungszentrum Juelich GmbH, Juelich (Germany); Rivetti, Angelo [INFN Sezione di Torino, Torino (Italy); Collaboration: PANDA-Collaboration

    2015-07-01

    The PANDA experiment is a multi purpose detector, investigating hadron physics in the charm quark mass regime. It is one of the main experiments at the future FAIR accelerator facility, using anti pp annihilations from a 1.5-15 GeV/c anti-proton beam. Because of the broad physics spectrum and the similarity of event and background signals, PANDA does an event selection based on the complete raw data of the detector. The innermost of PANDA's sub-systems is the Micro Vertex Detector (MVD), consisting of silicon pixel and strip sensors. The latter will be read out by a specialized, free-running readout front-end called PANDA Strip ASIC (PASTA). It has to face a high event rate of up to 40 kHz/ch in an radiation-intense environment. To fulfill the MVD's requirements, it has to give accurate timing information to incoming events (<10 ns) and determine the collected charge with an 8-bit precision. All this has to be done with a very low power design (<4 mW/ch) on a small footprint with less than 21 mm{sup 2} and 60 μm input pitch for 64 channels per chip. Therefore, a simple, time-based readout approach with two independent thresholds is chosen. In this talk, the conceptual design of the full front-end and some aspects of the digital part are presented.

  15. Next Generation PanDA Pilot for ATLAS and Other Experiments

    CERN Document Server

    Nilsson, P; The ATLAS collaboration; Caballero Bejar, J; De, K; Hover, J; Love, P; Maeno, T; Medrano Llamas, R; Walker, R; Wenaus, T

    2013-01-01

    The Production and Distributed Analysis system (PanDA) has been in use in the ATLAS Experiment since 2005. It uses a sophisticated pilot system to execute submitted jobs on the worker nodes. While originally designed for ATLAS, the PanDA Pilot has recently been refactored to facilitate use outside of ATLAS. Experiments are now handled as plug-ins such that a new PanDA Pilot user only has to implement a set of prototyped methods in the plug-in classes, and provide a script that configures and runs the experiment specific payload. We will give an overview of the Next Generation PanDA Pilot system and will present major features and recent improvements including live user payload debugging, data access via the Federated XRootD system, stage-out to alternative storage elements, support for the new ATLAS DDM system (Rucio), and an improved integration with glExec, as well as a description of the experiment specific plug-in classes. The performance of the pilot system in processing LHC data on the OSG, LCG and Nord...

  16. Next Generation PanDA Pilot for ATLAS and Other Experiments

    CERN Document Server

    Nilsson, P; The ATLAS collaboration; Caballero Bejar, J; De, K; Hover, J; Love, P; Maeno, T; Medrano Llamas, R; Walker, R; Wenaus, T

    2014-01-01

    The Production and Distributed Analysis system (PanDA) has been in use in the ATLAS Experiment since 2005. It uses a sophisticated pilot system to execute submitted jobs on the worker nodes. While originally designed for ATLAS, the PanDA Pilot has recently been refactored to facilitate use outside of ATLAS. Experiments are now handled as plug-ins such that a new PanDA Pilot user only has to implement a set of prototyped methods in the plug-in classes, and provide a script that configures and runs the experiment specific payload. We will give an overview of the Next Generation PanDA Pilot system and will present major features and recent improvements including live user payload debugging, data access via the Federated XRootD system, stage-out to alternative storage elements, support for the new ATLAS DDM system (Rucio), and an improved integration with glExec, as well as a description of the experiment specific plug-in classes. The performance of the pilot system in processing LHC data on the OSG, LCG and Nord...

  17. Atmospheric dispersion calculation for posturated accident of nuclear facilities and the computer code: PANDA

    International Nuclear Information System (INIS)

    Kitahara, Yoshihisa; Kishimoto, Yoichiro; Narita, Osamu; Shinohara, Kunihiko

    1979-01-01

    Several Calculation methods for relative concentration (X/Q) and relative cloud-gamma dose (D/Q) of the radioactive materials released from nuclear facilities by posturated accident are presented. The procedure has been formulated as a Computer program PANDA and the usage is explained. (author)

  18. Trigger-less readout system with pulse pile-up recovery for the PANDA electromagnetic calorimeter

    NARCIS (Netherlands)

    Kavatsyuk, M.; Tambave, G.; Hevinga, M.; Lemmens, P. J. J.; Schakel, P.; Schreuder, F.; Speelman, R.; Löhner, H.

    2013-01-01

    A simple, efficient, and robust on-line data-processing scheme was developed for the digital front-end electronics of the electromagnetic calorimeter of the PANDA spectrometer at FAIR, Darmstadt. The implementation of the processing algorithm in FPGA enables the construction of an almost dead-time

  19. The next generation of the ATLAS PanDA Monitoring System

    CERN Document Server

    Schovancova, J; The ATLAS collaboration; Klimentov, A; Love, P; Potekhin, M; Wenaus, T

    2014-01-01

    For many years the PanDA Workload Management System has been the basis for distributed production and analysis for the ATLAS experiment at the LHC. Since the start of data taking PanDA usage has ramped up steadily, with up to 1M completed jobs/day in 2013. The associated monitoring data volume has been rising as well, to levels that present a new set of challenges in the areas of database scalability and monitoring system performance and efficiency. Outside of ATLAS, the PanDA system is also being used in projects like AMS, LSST and a few others. It currently undergoes a significant redesign, both of the core server components responsible for workload management, brokerage and data access, and of the monitoring part, which is critically important for efficient execution of the workflow in a way that’s transparent to the user and also provides an effective set of tools for operational support. The new generation of the PanDA Monitoring Service is designed based on a proven, scalable, industry-standard Web Fr...

  20. Technical design report for the PANDA (AntiProton Annihilations at Darmstadt) Straw Tube Tracker

    NARCIS (Netherlands)

    Erni, W.; Keshelashvili, I.; Krusche, B.; Steinacher, M.; Heng, Y.; Liu, Z.; Liu, H.; Shen, X.; Wang, Q.; Xu, H.; Aab, A.; Albrecht, M.; Becker, J.; Csapo, A.; Feldbauer, F.; Fink, M.; Friedel, P.; Heinsius, F. H.; Held, T.; Klask, L.; Koch, H.; Kopf, B.; Leiber, S.; Leyhe, M.; Motzko, C.; Pelizaeus, M.; Pychy, J.; Roth, B.; Schroeder, T.; Schulze, J.; Sowa, C.; Steinke, M.; Trifterer, T.; Wiedner, U.; Zhong, J.; Beck, R.; Bianco, S.; Brinkmann, K. T.; Hammann, C.; Hinterberger, F.; Kaiser, D.; Kliemt, R.; Kube, M.; Pitka, A.; Quagli, T.; Schmidt, C.; Schmitz, R.; Schnell, R.; Thoma, U.; Vlasov, P.; Walther, D.; Wendel, C.; Wuerschig, T.; Zaunick, H. G.; Bianconi, A.; Bragadireanu, M.; Caprini, M.; Pantea, D.; Pantelica, D.; Pietreanu, D.; Serbina, L.; Tarta, P. D.; Kaplan, D.; Fiutowski, T.; Idzik, M.; Mindur, B.; Przyborowski, D.; Swientek, K.; Czech, B.; Kistryn, M.; Kliczewski, S.; Kozela, A.; Kulessa, P.; Lebiedowicz, P.; Pysz, K.; Schaefer, W.; Siudak, R.; Szczurek, A.; Jowzaee, S.; Kajetanowicz, M.; Kamys, B.; Kistryn, S.; Korcyl, G.; Korcyl, K.; Krzemien, W.; Magiera, A.; Moskal, P.; Palka, M.; Rudy, Z.; Salabura, P.; Smyrski, J.; Wronska, A.; Augustin, I.; Lehmann, I.; Nimorus, D.; Schepers, G.; Al-Turany, M.; Arora, R.; Deppe, H.; Flemming, H.; Gerhardt, A.; Goetzen, K.; Jordi, A. F.; Kalicy, G.; Karabowicz, R.; Lehmann, D.; Lewandowski, B.; Luehning, J.; Maas, F.; Orth, H.; Patsyuk, M.; Peters, K.; Saito, T.; Schepers, G.; Schmidt, C. J.; Schmitt, L.; Schwarz, C.; Schwiening, J.; Traxler, M.; Voss, B.; Wieczorek, P.; Wilms, A.; Zuehlsdorf, M.; Abazov, V. M.; Alexeev, G.; Arefiev, A.; Astakhov, V. I.; Barabanov, M. Yu.; Batyunya, B. V.; Davydov, Yu. I.; Dodokhov, V. Kh.; Efremov, A. A.; Fedunov, A. G.; Festchenko, A. A.; Galoyan, A. S.; Grigoryan, S.; Karmokov, A.; Koshurnikov, E. K.; Lobanov, V. I.; Lobanov, Yu. Yu.; Makarov, A. F.; Malinina, L. V.; Malyshev, V. L.; Mustafaev, G. A.; Olshevskiy, A.; Pasyuk, M. A.; Perevalova, E. A.; Piskun, A. A.; Pocheptsov, T. A.; Pontecorvo, G.; Rodionov, V. K.; Rogov, Yu. N.; Salmin, R. A.; Samartsev, A. G.; Sapozhnikov, M. G.; Shabratova, G. S.; Skachkova, A. N.; Skachkov, N. B.; Strokovsky, E. A.; Suleimanov, M. K.; Teshev, R. Sh.; Tokmenin, V. V.; Uzhinsky, V. V.; Vodopyanov, A. S.; Zaporozhets, S. A.; Zhuravlev, N. I.; Zorin, A. G.; Branford, D.; Glazier, D.; Watts, D.; Woods, P.; Britting, A.; Eyrich, W.; Lehmann, A.; Uhlig, F.; Dobbs, S.; Metreveli, Z.; Seth, K.; Tomaradze, A.; Xiao, T.; Bettoni, D.; Carassiti, V.; Ramusino, A. Cotta; Dalpiaz, P.; Drago, A.; Fioravanti, E.; Garzia, I.; Savrie, M.; Stancari, G.; Bianchi, N.; Gianotti, P.; Guaraldo, C.; Lucherini, V.; Orecchini, D.; Pace, E.; Bersani, A.; Bracco, G.; Macri, M.; Parodi, R. F.; Bremer, D.; Dormenev, V.; Drexler, P.; Dueren, M.; Eissner, T.; Foehl, K.; Galuska, M.; Gessler, T.; Hayrapetyan, A.; Hu, J.; Koch, P.; Kroeck, B.; Kuehn, W.; Lange, S.; Liang, Y.; Merle, O.; Metag, V.; Moritz, M.; Muenchow, D.; Nanova, M.; Novotny, R.; Spruck, B.; Stenzel, H.; Ullrich, T.; Werner, M.; Xu, H.; Euan, C.; Hoek, M.; Ireland, D.; Keri, T.; Montgomery, R.; Protopopescu, D.; Rosner, G.; Seitz, B.; Babai, M.; Glazenborg-Kluttig, A.; Kavatsyuk, M.; Lemmens, P.; Lindemulder, M.; Löhner, H.; Messchendorp, J.; Moeini, H.; Schakel, P.; Schreuder, F.; Smit, H.; Tambave, G.; van der Weele, J. C.; Veenstra, Rick; Sohlbach, H.; Buescher, M.; Deermann, D.; Dosdall, R.; Esch, S.; Gillitzer, A.; Goldenbaum, F.; Grunwald, D.; Henssler, S.; Herten, A.; Hu, Q.; Kemmerling, G.; Kleines, H.; Kozlov, V.; Lehrach, A.; Maier, R.; Mertens, M.; Ohm, H.; Orfanitski, S.; Prasuhn, D.; Randriamalala, T.; Ritman, J.; Roeder, M.; Schadmand, S.; Serdyuk, V.; Sterzenbach, G.; Stockmanns, T.; Wintz, P.; Wuestner, P.; Xu, H.; Kisiel, J.; Li, S.; Li, Z.; Sun, Z.; Xu, H.; Rigato, V.; Fissum, S.; Hansen, K.; Isaksson, L.; Lundin, M.; Schroder, B.; Achenbach, P.; Bleser, S.; Cahit, U.; Cardinali, M.; Denig, A.; Distler, M.; Fritsch, M.; Jasinski, P.; Kangh, D.; Karavdina, A.; Lauth, W.; Merkel, H.; Michel, M.; Espi, M. C. Mora; Mueller, U.; Pochodzalla, J.; Sanchez, S.; Sanchez-Lorente, A.; Schlimme, S.; Sfienti, C.; Thiel, M.; Weber, T.; Dormenev, V. I.; Fedorov, A. A.; Korzhik, M. V.; Missevitch, O. V.; Balanutsa, V.; Chernetsky, V.; Demekhin, A.; Dolgolenko, A.; Fedorets, P.; Gerasimov, A.; Goryachev, V.; Varentsov, V.; Boukharov, A.; Malyshev, O.; Marishev, I.; Semenov, A.; Boehmer, F.; Dorheim, S.; Ketzer, B.; Paul, S.; Hergemoeller, A. K.; Khoukaz, A.; Koehler, E.; Taeschner, A.; Wessels, J.; Varma, R.; Chaterjee, A.; Jha, V.; Kailas, S.; Roy, B. J.; Yan, Y.; Chinorat, K.; Khanchai, K.; Ayut, L.; Pomrad, S.; Baldin, E.; Kotov, K.; Peleganchuk, S.; Tikhonov, Yu.; Boucher, J.; Chambert, V.; Dbeyssi, A.; Gumberidze, M.; Hennino, T.; Imre, M.; Kunne, R.; Le Galliard, C.; Ma, B.; Marchand, D.; Maroni, A.; Ong, S.; Ramstein, B.; Rosier, P.; Tomasi-Gustafsson, E.; De Wiele, J. Van; Boca, G.; Braghieri, A.; Costanza, S.; Genova, P.; Lavezzi, L.; Montagna, P.; Rotondi, A.; Abramov, V.; Belikov, N.; Davidenko, A.; Derevschikov, A.; Goncharenko, Y.; Grishin, V.; Kachanov, V.; Konstantinov, D.; Kormilitsin, V.; Melnik, Y.; Levin, A.; Minaev, N.; Mochalov, V.; Morozov, D.; Nogach, L.; Poslavskiy, S.; Ryazantsev, A.; Ryzhikov, S.; Semenov, P.; Shein, I.; Uzunian, A.; Vasiliev, A.; Yakutin, A.; Back, T.; Cederwall, B.; Makonyi, K.; Tegner, P. E.; von Wurtemberg, K. M.; Belostotski, S.; Gavrilov, G.; Itzotov, A.; Kashchuk, A.; Kisselev, A.; Kravchenko, P.; Levitskaya, O.; Manaenkov, S.; Miklukho, O.; Naryshkin, Y.; Veretennikov, D.; Vikhrov, V.; Zhadanov, A.; Alberto, D.; Amoroso, A.; Bussa, M. 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    This document describes the technical layout and the expected performance of the Straw Tube Tracker (STT), the main tracking detector of the PANDA target spectrometer. The STT encloses a Micro-Vertex-Detector (MVD) for the inner tracking and is followed in beam direction by a set of GEM stations.