Epigenetic features of testicular germ cell tumours in relation to epigenetic characteristics of foetal germ cells

DEFF Research Database (Denmark)

Kristensen, Dina Graae; Skakkebæk, Niels E; Rajpert-De Meyts, Ewa

2013-01-01

in humans. However, the common precursor of testicular cancers- the carcinoma in situ (CIS) cell- is thought to be an arrested foetal germ cell. Therefore studies of CIS cells may leverage information on human foetal germ cell development and, in particular, when neoplastic transformation is initiated....... In this review, we will focus on current knowledge of the epigenetics of CIS cells and relate it to the epigenetic changes occurring in early developing germ cells of mice during specification, migration and colonization. We will focus on DNA methylation and some of the best studied histone modifications like H3...... event in the initiation of testicular germ cell cancer. Even though only sparse information is available on epigenetic cues in human foetal germ cells, these indicate that the developmental patterns differ from the findings in mice and emphasize the need for further studies of foetal germ cell...

A germ cell determinant reveals parallel pathways for germ line development in Caenorhabditis elegans.

Science.gov (United States)

Mainpal, Rana; Nance, Jeremy; Yanowitz, Judith L

2015-10-15

Despite the central importance of germ cells for transmission of genetic material, our understanding of the molecular programs that control primordial germ cell (PGC) specification and differentiation are limited. Here, we present findings that X chromosome NonDisjunction factor-1 (XND-1), known for its role in regulating meiotic crossover formation, is an early determinant of germ cell fates in Caenorhabditis elegans. xnd-1 mutant embryos display a novel 'one PGC' phenotype as a result of G2 cell cycle arrest of the P4 blastomere. Larvae and adults display smaller germ lines and reduced brood size consistent with a role for XND-1 in germ cell proliferation. Maternal XND-1 proteins are found in the P4 lineage and are exclusively localized to the nucleus in PGCs, Z2 and Z3. Zygotic XND-1 turns on shortly thereafter, at the ∼300-cell stage, making XND-1 the earliest zygotically expressed gene in worm PGCs. Strikingly, a subset of xnd-1 mutants lack germ cells, a phenotype shared with nos-2, a member of the conserved Nanos family of germline determinants. We generated a nos-2 null allele and show that nos-2; xnd-1 double mutants display synthetic sterility. Further removal of nos-1 leads to almost complete sterility, with the vast majority of animals without germ cells. Sterility in xnd-1 mutants is correlated with an increase in transcriptional activation-associated histone modification and aberrant expression of somatic transgenes. Together, these data strongly suggest that xnd-1 defines a new branch for PGC development that functions redundantly with nos-2 and nos-1 to promote germline fates by maintaining transcriptional quiescence and regulating germ cell proliferation. © 2015. Published by The Company of Biologists Ltd.

2009 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Lewis County, Washington

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Watershed Sciences, Inc. (WSI) collected Light Detection and Ranging (LiDAR) data for the Lewis County survey area for the Puget Sound LiDAR Consortium. This data...

Modeling cell elongation during germ band retraction: cell autonomy versus applied anisotropic stress

International Nuclear Information System (INIS)

Lynch, Holley E; Shane Hutson, M; Veldhuis, Jim; Wayne Brodland, G

2014-01-01

The morphogenetic process of germ band retraction in Drosophila embryos involves coordinated movements of two epithelial tissues—germ band and amnioserosa. The germ band shortens along its rostral–caudal or head-to-tail axis, widens along its perpendicular dorsal-ventral axis, and uncurls from an initial ‘U’ shape. The amnioserosa mechanically assists this process by pulling on the crook of the U-shaped germ band. The amnioserosa may also provide biochemical signals that drive germ band cells to change shape in a mechanically autonomous fashion. Here, we use a finite-element model to investigate how these two contributions reshape the germ band. We do so by modeling the response to laser-induced wounds in each of the germ band’s spatially distinct segments (T1–T3, A1–A9) during the middle of retraction when segments T1–A3 form the ventral arm of the ‘U’, A4–A7 form its crook, and A8–A9 complete the dorsal arm. We explore these responses under a range of externally applied stresses and internal anisotropy of cell edge tensions—akin to a planar cell polarity that can drive elongation of cells in a direction parallel to the minimum edge tension—and identify regions of parameter space (edge-tension anisotropy versus stress anisotropy) that best match previous experiments for each germ band segment. All but three germ band segments are best fit when the applied stress anisotropy and the edge-tension anisotropy work against one another—i.e., when the isolated effects would elongate cells in perpendicular directions. Segments in the crook of the germ band (A4–A7) have cells that elongate in the direction of maximum external stress, i.e., external stress anisotropy is dominant. In most other segments, the dominant factor is internal edge-tension anisotropy. These results are consistent with models in which the amnioserosa pulls on the crook of the germ band to mechanically assist retraction. In addition, they suggest a mechanical cue for

Role of Axumin PET Scan in Germ Cell Tumor

Science.gov (United States)

2018-05-01

Testis Cancer; Germ Cell Tumor; Testicular Cancer; Germ Cell Tumor of Testis; Germ Cell Tumor, Testicular, Childhood; Testicular Neoplasms; Testicular Germ Cell Tumor; Testicular Yolk Sac Tumor; Testicular Choriocarcinoma; Testicular Diseases; Germ Cell Cancer Metastatic; Germ Cell Neoplasm of Retroperitoneum; Germ Cell Cancer, Nos

Convergent evolution of germ granule nucleators: A hypothesis.

Science.gov (United States)

Kulkarni, Arpita; Extavour, Cassandra G

2017-10-01

Germ cells have been considered "the ultimate stem cell" because they alone, during normal development of sexually reproducing organisms, are able to give rise to all organismal cell types. Morphological descriptions of a specialized cytoplasm termed 'germ plasm' and associated electron dense ribonucleoprotein (RNP) structures called 'germ granules' within germ cells date back as early as the 1800s. Both germ plasm and germ granules are implicated in germ line specification across metazoans. However, at a molecular level, little is currently understood about the molecular mechanisms that assemble these entities in germ cells. The discovery that in some animals, the gene products of a small number of lineage-specific genes initiate the assembly (also termed nucleation) of germ granules and/or germ plasm is the first step towards facilitating a better understanding of these complex biological processes. Here, we draw on research spanning over 100years that supports the hypothesis that these nucleator genes may have evolved convergently, allowing them to perform analogous roles across animal lineages. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

2015 Puget Sound LiDAR Consortium (PSLC) LiDAR: WA DNR Lands (P1)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In June 2014, WSI, a Quantum Spatial Inc. (QSI) company, was contracted by the Puget Sound LiDAR Consortium (PSLC) to collect Light Detection and Ranging (LiDAR)...

2014 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Willapa Valley (Delivery 1)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In January, 2014 WSI, a Quantum Spatial (QSI) company, was contracted by the Puget Sound LiDAR Consortium (PSLC) to collect Light Detection and Ranging (LiDAR) data...

2015 Puget Sound LiDAR Consortium (PSLC) LiDAR: WA DNR Lands (P2)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In June 2014, WSI, a Quantum Spatial Inc. (QSI) company, was contracted by the Puget Sound LiDAR Consortium (PSLC) to collect Light Detection and Ranging (LiDAR)...

eEcoLiDAR, eScience infrastructure for ecological applications of LiDAR point clouds : reconstructing the 3D ecosystem structure for animals at regional to continental scales

NARCIS (Netherlands)

Kissling, W.D.; Seijmonsbergen, A.C.; Foppen, R.P.B.; Bouten, W.

2017-01-01

The lack of high-resolution measurements of 3D ecosystem structure across broad spatial extents impedes major advancements in animal ecology and biodiversity science. We aim to fill this gap by using Light Detection and Ranging (LiDAR) technology to characterize the vertical and horizontal

Extragonadal Germ Cell Cancer (EGC)

Science.gov (United States)

The Testicular Cancer Resource Center Extragonadal Germ Cell Cancer (EGC) 95% of all testicular tumors are germ cell tumors. That is, the tumors originate in the sperm forming cells in the testicles ( ...

Multidimensional representations: The knowledge domain of germs held by students, teachers and medical professionals

Science.gov (United States)

Rua, Melissa Jo

The present study examined the understandings held by 5th, 8th, and 11th-grade students, their teachers and medical professionals about germs. Specifically, this study describes the content and structure of students' and adults' conceptions in the areas of germ contraction, transmission, and treatment of infectious and non-infectious diseases caused by microorganisms. Naturalistic and empirical research methods were used to investigate participants' conceptions. Between and within group similarities were found using data from concept maps on the topic "flu," drawings of germs, a 20 word card sort related to germs and illness, and a semi-structured interview. Concept maps were coded according to techniques by Novak and Gowan (1984). Drawings of germs were coded into four main categories (bacteria, viruses, animal cell, other) and five subcategories (disease, caricature, insect, protozoa, unclassified). Cluster patterns for the card sorts of each group were found using multidimensional scaling techniques. Six coding categories emerged from the interview transcripts: (a) transmission, (b) treatment, (c) effect of weather on illness, (d) immune response, (e) location of germs, and (f) similarities and differences between bacteria and viruses. The findings showed students, teachers and medical professionals have different understandings about bacteria and viruses and the structures of those understandings vary. Gaps or holes in the participants knowledge were found in areas such as: (a) how germs are transmitted, (b) where germs are found, (c) how the body transports and uses medicine, (d) how the immune system functions, (e) the difference between vaccines and non-prescription medicines, (f) differences that exist between bacteria and viruses, and (g) bacterial resistance to medication. The youngest students relied heavily upon personal experiences with germs rather than formal instruction when explaining their conceptions. As a result, the influence of media was

Utilização do farelo de germe de milho desengordurado na alimentação de suínos em crescimento e terminação: digestibilidade e desempenho Utilization of defatted corn germ meal on growing-finishing pigs feeding: digestibility and performance

Directory of Open Access Journals (Sweden)

Ivan Moreira

2002-11-01

Full Text Available Foram conduzidos dois experimentos (Digestibilidade e Desempenho, objetivando avaliar o valor nutricional e a viabilidade de utilização do farelo de germe de milho desengordurado (FGMD em rações de suínos, na fase de crescimento e terminação. I Ensaio de digestibilidade: foram utilizados 12 suínos com peso vivo médio de 42,0±5,4 kg, alojados em gaiolas de metabolismo, em que seis receberam rações compostas de 70% de ração referência e 30% de FGMD e seis receberam ração referência. O FGMD apresentou coeficiente de digestibilidade da energia de 80,98 % e coeficiente de metabolização de 78,04%, o que corresponde a 3.060 kcal de ED/kg e 2.949 kcal de EM/kg. II Ensaio de desempenho: foram utilizados 32 suínos mestiços, sendo metade de fêmeas e metade de machos castrados, com peso inicial médio de 31,9±3,6 kg. Os suínos foram alojados em 16 baias, perfazendo, assim, 2 animais por baia. Os animais receberam ração à vontade, contendo níveis crescentes (0, 15, 30 e 45% de farelo de germe de milho desengordurado. Foi utilizado o delineamento em blocos casualizados, com quatro tratamentos, quatro repetições, com dois animais por unidade experimental. A inclusão de níveis crescentes de FGMD prejudicou o desempenho dos suínos, reduziu a espessura de toucinho e não influenciou a profundidade do lombo, medidas no animal vivo. A análise econômica, considerando o preço do FGMD, sendo 80% do preço do milho, mostrou que o nível de 15% de inclusão do FGMD é o mais econômico, tanto para a fase de crescimento, quanto para a fase de terminação.Two studies (Digestibility and Performance were carried out to evaluate the nutritional value and the feasibility of using defatted corn germ meal (DCGM fed to growing-finishing pigs. I Digestibility trial: Twelve pigs with initial body weight of 42.0±5.4 kg were hold in metabolism cage. Six pigs were fed a diet with 70% of basal diet plus 30% of DCGM and six received basal diet

Specification of primordial germ cells in medaka (Oryzias latipes

Directory of Open Access Journals (Sweden)

Raz Erez

2007-01-01

Full Text Available Abstract Background Primordial germ cells (PGCs give rise to gametes that are responsible for the development of a new organism in the next generation. Two modes of germ line specification have been described: the inheritance of asymmetrically-localized maternally provided cytoplasmic determinants and the induction of the PGC fate by other cell types. PGCs specification in zebrafish appears to depend on inheritance of germ plasm in which several RNA molecules such as vasa and nanos reside. Whether the specification mode of PGCs found in zebrafish is general for other fish species was brought into question upon analysis of olvas expression – the vasa homologue in another teleost, medaka (Oryzias latipes. Here, in contrast to the findings in zebrafish, the PGCs are found in a predictable position relative to a somatic structure, the embryonic shield. This finding, coupled with the fact that vasa mRNA, which is localized to the germ plasm of zebrafish but does not label a similar structure in medaka opened the possibility of fundamentally different mechanisms governing PGC specification in these two fish species. Results In this study we addressed the question concerning the mode of PGC specification in medaka using embryological experiments, analysis of RNA stability in the PGCs and electron microscopy observations. Dramatic alterations in the somatic environment, i.e. induction of a secondary axis or mesoderm formation alteration, did not affect the PGC number. Furthermore, the PGCs of medaka are capable of protecting specific RNA molecules from degradation and could therefore exhibit a specific mRNA expression pattern controlled by posttrancriptional mechanisms. Subsequent analysis of 4-cell stage medaka embryos using electron microscopy revealed germ plasm-like structures located at a region corresponding to that of zebrafish germ plasm. Conclusion Taken together, these results are consistent with the idea that in medaka the inheritance of

2014 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Cedar River Watershed (Delivery 2)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In September 2013, WSI, a Quantum Spatial company (QSI), was contracted by the Puget Sound LiDAR Consortium (PSLC) to collect Light Detection and Ranging (LiDAR)...

2014 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Cedar River Watershed (Delivery 1)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In September 2013, WSI, a Quantum Spatial company (QSI), was contracted by the Puget Sound LiDAR Consortium (PSLC) to collect Light Detection and Ranging (LiDAR)...

Saginaw Bay, MI LiDAR

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — TASK NAME:(NRCS) Saginaw Bay, MI LiDAR LiDAR Data Acquisition and Processing Production Task USGS Contract No. G10PC00057 Task Order No. G11PD01254 Woolpert Order...

A role for Lin28 in primordial germ cell development and germ cell malignancy

Science.gov (United States)

West, Jason A.; Viswanathan, Srinivas R.; Yabuuchi, Akiko; Cunniff, Kerianne; Takeuchi, Ayumu; Park, In-Hyun; Sero, Julia E.; Zhu, Hao; Perez-Atayde, Antonio; Frazier, A. Lindsay; Surani, M. Azim; Daley, George Q.

2009-01-01

The rarity and inaccessibility of the earliest primordial germ cells (PGCs) in the mouse embryo thwarts efforts to investigate molecular mechanisms of germ cell specification. Stella marks the minute founder population of the germ lineage1,2. Here we differentiate mouse embryonic stem cells (ESCs) carrying a Stella transgenic reporter into putative PGCs in vitro. The Stella+ cells possess a transcriptional profile similar to embryo-derived PGCs, and like their counterparts in vivo, lose imprints in a time-dependent manner. Using inhibitory RNAs to screen candidate genes for effects on the development of Stella+ cells in vitro, we discovered that Lin28, a negative regulator of let-7 microRNA processing3-6, is essential for proper PGC development. We further show that Blimp1, a let-7 target and a master regulator of PGC specification7-9, can rescue the effect of Lin28-deficiency during PGC development, thereby establishing a mechanism of action for Lin28 during PGC specification. Over-expression of Lin28 promotes formation of Stella+ cells in vitro and PGCs in chimeric embryos, and is associated with human germ cell tumours. The differentiation of putative PGCs from ESCs in vitro recapitulates the early stages of gamete development in vivo, and provides an accessible system for discovering novel genes involved in germ cell development and malignancy. PMID:19578360

Estimation of the fraction of absorbed photosynthetically active radiation (fPAR) in maize canopies using LiDAR data and hyperspectral imagery.

Science.gov (United States)

Qin, Haiming; Wang, Cheng; Zhao, Kaiguang; Xi, Xiaohuan

2018-01-01

Accurate estimation of the fraction of absorbed photosynthetically active radiation (fPAR) for maize canopies are important for maize growth monitoring and yield estimation. The goal of this study is to explore the potential of using airborne LiDAR and hyperspectral data to better estimate maize fPAR. This study focuses on estimating maize fPAR from (1) height and coverage metrics derived from airborne LiDAR point cloud data; (2) vegetation indices derived from hyperspectral imagery; and (3) a combination of these metrics. Pearson correlation analyses were conducted to evaluate the relationships among LiDAR metrics, hyperspectral metrics, and field-measured fPAR values. Then, multiple linear regression (MLR) models were developed using these metrics. Results showed that (1) LiDAR height and coverage metrics provided good explanatory power (i.e., R2 = 0.81); (2) hyperspectral vegetation indices provided moderate interpretability (i.e., R2 = 0.50); and (3) the combination of LiDAR metrics and hyperspectral metrics improved the LiDAR model (i.e., R2 = 0.88). These results indicate that LiDAR model seems to offer a reliable method for estimating maize fPAR at a high spatial resolution and it can be used for farmland management. Combining LiDAR and hyperspectral metrics led to better performance of maize fPAR estimation than LiDAR or hyperspectral metrics alone, which means that maize fPAR retrieval can benefit from the complementary nature of LiDAR-detected canopy structure characteristics and hyperspectral-captured vegetation spectral information.

2012 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Quinault River Watershed, Washington (Delivery 1)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Watershed Sciences, Inc. (WSI) collected Light Detection and Ranging (LiDAR) data on the Quinault watershed survey area for the Puget Sound LiDAR Consortium. This...

Establishment of the Vertebrate Germ Layers.

Science.gov (United States)

Tseng, Wei-Chia; Munisha, Mumingjiang; Gutierrez, Juan B; Dougan, Scott T

2017-01-01

The process of germ layer formation is a universal feature of animal development. The germ layers separate the cells that produce the internal organs and tissues from those that produce the nervous system and outer tissues. Their discovery in the early nineteenth century transformed embryology from a purely descriptive field into a rigorous scientific discipline, in which hypotheses could be tested by observation and experimentation. By systematically addressing the questions of how the germ layers are formed and how they generate overall body plan, scientists have made fundamental contributions to the fields of evolution, cell signaling, morphogenesis, and stem cell biology. At each step, this work was advanced by the development of innovative methods of observing cell behavior in vivo and in culture. Here, we take an historical approach to describe our current understanding of vertebrate germ layer formation as it relates to the long-standing questions of developmental biology. By comparing how germ layers form in distantly related vertebrate species, we find that highly conserved molecular pathways can be adapted to perform the same function in dramatically different embryonic environments.

Preconception exposures to potential germ-cell mutagens

International Nuclear Information System (INIS)

Draper, G.

2008-01-01

Radiation and other agents can cause germ-cell mutations in animal systems. No human germ-cell mutagen has been identified, but this does not mean that human germ-cells are not vulnerable to mutagenesis. There has been particular concern about the possible health effects on offspring following parental preconception exposure to ionizing radiation - both occupational and therapeutic. A strong association with preconception radiation exposure in the fathers of the cases was found in a case-control study of young people with leukaemia living near the Sellafield nuclear plant in the UK. Subsequent studies of workers occupationally exposed to ionizing radiation have failed to confirm these findings. No statistically significant effects have been reported from studies of possible indicators of germ-cell mutagenesis in the A-bomb survivors. Studies of offspring of cancer survivors who receive radiotherapy and mutagenic chemotherapy have found no evidence of germ-cell mutagenesis. Failure to detect human germ-cell mutagenic agents may be a consequence of inadequate study sizes or insufficiently sensitive laboratory techniques. (authors)

Lipase inactivation in wheat germ by gamma irradiation

International Nuclear Information System (INIS)

Jha, Pankaj Kumar; Kudachikar, V.B.; Kumar, Sourav

2013-01-01

An attempt was made to improve the shelf life of wheat germ by optimizing processing conditions involving γ-irradiation. Studies were carried out to investigate the effect of γ-irradiation (0–30 kGy doses) on the chemical composition of wheat germ with respect to variation in moisture, total ash, crude fat, free fatty acid, protein and lipase activity. The results demonstrate that shelf stability of wheat germ was achieved by inactivation of lipase at doses of γ-irradiation greater than 12 kGy. - Highlights: Ø γ-irradiation was found to inactivate Lipase present in Wheat Germ. Ø The treatment did not result in significant changes in Total Ash, Moisture and Protein Content of Wheat Germ. Ø The irradiation at 30 kGy resulted in 31.2 % inactivation of Lipase in Wheat Germ

Darüşşifas Where Music Threapy was Practiced During Anatolian Seljuks and Ottomans / Selçuklu ve Osmanlı Darüşşifalarında Müzikle Tedavi

Directory of Open Access Journals (Sweden)

Gülşen Erdal

2013-03-01

etki günümüzde açıkça bilinmektedir. Bilinen en eski tedavi yöntemlerinden biri olan Müzikle tedavinin geçmişi binlerce yıl öncesine dayanır. Türklerin, müzikle tedavide İbn Sina, Razî, Farabî, Hasan Şuurî ve Gevrekzade Hasan Efendi gibi bilim adamlarının yaptıkları araştırmaların yer aldığı kitaplardan faydalanarak, Selçuklu ve Osmanlılar döneminde, akıl hastalıklarının tedavisine uygun akustikle inşa edilen hastaneler-darüşşifalarda kullanmaları, ilk ciddi müzikle tedavi uygulamaları olarak değerlendirilir. Darüşşifa, Türk ve İslam dünyasında pratiğe ve gözleme dayalı sağlık hizmetleri veren hastaları tedavi eden sağlık ve eğitim kurumlarına verilen isimlerden birisidir. Darüşşifalar Tıp mesleğinin uygulanmasına yönelik özel mimari anlayış içeren yapıları ile de ayrıcalıklı bir yere sahiptir. Türkler Anadolu’ya yerleşmeleri ile birlikte çeşitli imar faaliyetlerine başlamışlardır. Yapılan bu faaliyetler içerisinde kervansaraylar, medreseler ve camilerle birlikte darüşşifalar da bulunmaktadır. Selçuklu ve Osmanlı darüşşifalarında tıbbi konular araştırmalara ve bilimsel esaslara bağlı kalınarak işleniyor, aynı zamanda tıp medreselerinde cerrah yetiştiriliyordu. Yapılan eğitimler dışında tatbiki uygulamaların da yaptırıldığı bilinmektedir. Darrüşşifalar, Anadolu Selçuklu ve Osmanlı medreseleri plan şemasına uygun olarak tasarlanmıştır. Genelde derslerin verildiği ana eyvan ve farklı ihtiyaçlar için düzenlenmiş avlu etrafında yer alan odalardan oluşmaktaydı. Türk sanat tarihi içerisinde sıklıkla karşılaştığımız tıp siteleri aynı zamanda günümüz tıp fakültesi mantığı ile örtüşmektedir. Buralarda tedavi edici sağlık hizmetleri sunulmaktaydı. Müzikle tedavi yapılan darüşşifalardan günümüze ulaşan ve önem teşkil edenler bu çalışmada sanat tarihi ve müziğin iyileştirici gücünün yüzyıllar �

Understanding Mammalian Germ Line Development with In Vitro Models.

Science.gov (United States)

Martínez-Arroyo, Ana M; Míguez-Forján, Jose M; Remohí, Jose; Pellicer, Antonio; Medrano, Jose V

2015-09-15

Germ line development is crucial in organisms with sexual reproduction to complete their life cycle. In mammals, knowledge about germ line development is based mainly on the mouse model, in which genetic and epigenetic events are well described. However, little is known about how germ line development is orchestrated in humans, especially in the earliest stages. New findings derived from human in vitro models to obtain germ cells can shed light on these questions. This comprehensive review summarizes the current knowledge about mammalian germ line development, emphasizing the state of the art obtained from in vitro models for germ cell-like cell derivation. Current knowledge of the pluripotency cycle and germ cell specification has allowed different in vitro strategies to obtain germ cells with proven functionality in mouse models. Several reports during the last 10 years show that in vitro germ cell derivation with proven functionality to generate a healthy offspring is possible in mice. However, differences in the embryo development and pluripotency potential between human and mouse make it difficult to extrapolate these results. Further efforts on both human and mouse in vitro models to obtain germ cells from pluripotent stem cells may help to elucidate how human physiological events take place; therefore, therapeutic strategies can also be considered.

Specular and diffuse object extraction from a LiDAR derived Digital Surface Model (DSM)

International Nuclear Information System (INIS)

Saraf, N M; Hamid, J R A; Kamaruddin, M H

2014-01-01

This paper intents to investigate the indifferent behaviour quantitatively of target objects of interest due to specular and diffuse reflectivity based on generated LiDAR DSM of the study site in Ampang, Kuala Lumpur. The LiDAR data to be used was initially checked for its reliability and accuracy. The point cloud LiDAR data was converted to raster to allow grid analysis of the next process of generating the DSM and DTM. Filtering and masking were made removing the features of interest (i.e. building and tree) and other unwanted above surface features. A normalised DSM and object segmentation approach were conducted on the trees and buildings separately. Error assessment and findings attained were highlighted and documented. The result of LiDAR verification certified that the data is reliable and useable. The RMSE obtained is within the tolerance value of horizontal and vertical accuracy (x, y, z) i.e. 0.159 m, 0.211 m 0.091 m respectively. Building extraction inclusive of roof top based on slope and contour analysis undertaken indicate the capability of the approach while single tree extraction through aspect analysis appears to preserve the accuracy of the extraction accordingly. The paper has evaluated the suitable methods of extracting non-ground features and the effective segmentation of the LiDAR data

LiDAR utility for natural resource managers

Science.gov (United States)

Andrew Thomas Hudak; Jeffrey Scott Evans; Alistair Mattthew Stuart. Smith

2009-01-01

Applications of LiDAR remote sensing are exploding, while moving from the research to the operational realm. Increasingly, natural resource managers are recognizing the tremendous utility of LiDAR-derived information to make improved decisions. This review provides a cross-section of studies, many recent, that demonstrate the relevance of LiDAR across a suite of...

Cytokeratin expression in mouse lacrimal gland germ epithelium.

Science.gov (United States)

Hirayama, Masatoshi; Liu, Ying; Kawakita, Tetsuya; Shimmura, Shigeto; Tsubota, Kazuo

2016-05-01

The lacrimal gland secretes tear fluids that protect the ocular surface epithelium, and its dysfunction leads to dry eye disease (DED). The functional restoration of the lacrimal gland by engraftment of a bioengineered lacrimal gland using lacrimal gland germ epithelial cells has been proposed to cure DED in mice. Here, we investigate the expression profile of cytokeratins in the lacrimal gland germ epithelium to clarify their unique characteristics. We performed quantitative polymerase chain reaction (Q-PCR) and immunohistochemistry (IHC) analysis to clarify the expression profile of cytokeratin in the lacrimal gland germ epithelium. The mRNA expression of keratin (KRT) 5, KRT8, KRT14, KRT15, and KRT18 in the lacrimal gland germ epithelium was increased compared with that in mouse embryonic stem cells and the lacrimal gland germ mesenchyme, as analyzed by Q-PCR. The expression level of KRT15 increased in the transition from stem cells to lacrimal gland germ epithelium, then decreased as the lacrimal gland matured. IHC revealed that the expression set of these cytokeratins in the lacrimal gland germ epithelium was different from that in the adult lacrimal gland. The expression of KRT15 was observed in the lacrimal gland germ epithelium, and it segmentalized into some of the basal cells in the intercanulated duct in mature gland. We determined the expression profile of cytokeratins in the lacrimal gland epithelium, and identified KRT15 as a candidate unique cellular marker for the lacrimal gland germ epithelium. Copyright © 2015 Elsevier Ltd. All rights reserved.

Germ Plasm Biogenesis--An Oskar-Centric Perspective.

Science.gov (United States)

Lehmann, Ruth

2016-01-01

Germ granules are the hallmark of all germ cells. These membrane-less, electron-dense structures were first observed over 100 years ago. Today, their role in regulating and processing transcripts critical for the establishment, maintenance, and protection of germ cells is well established, and pathways outlining the biochemical mechanisms and physical properties associated with their biogenesis are emerging. © 2016 Elsevier Inc. All rights reserved.

Germ cell transplantation in an azoospermic Klinefelter bull.

Science.gov (United States)

Joerg, Hannes; Janett, Fredi; Schlatt, Stefan; Mueller, Simone; Graphodatskaya, Daria; Suwattana, Duangsmorn; Asai, Mika; Stranzinger, Gerald

2003-12-01

Germ cell transplantation is a technique that transfers donor testicular cells into recipient testes. A population of germ cells can colonize the recipient testis, initiate spermatogenesis, and produce sperm capable of fertilization. In the present study, a nonmosaic Klinefelter bull was used as a germ cell recipient. The donor cell suspension was introduced into the rete testis using ultrasound-guided puncture. A pulsatile administration of GnRH was performed to stimulate spermatogenesis. The molecular approach to detect donor cells was done by a quantitative polymerase chain reaction with allele discrimination based on a genetic mutation between donor and recipient. Therefore, a known genetic mutation, associated with coat-color phenotype, was used to calculate the ratio of donor to recipient cells in the biopsy specimens and ejaculates for 10 mo. After slaughtering, meiotic preparations were performed. The injected germ cells did not undergo spermatogenesis. Six months after germ cell transplantation, the donor cells were rejected, which indicates that the donor cells could not incorporate in the testis. The hormone stimulation showed that the testosterone-producing Leydig cells were functionally intact. Despite subfertility therapy, neither the recipient nor the donor cells underwent spermatogenesis. Therefore, nonmosaic Klinefelter bulls are not suitable as germ cell recipients. Future germ cell recipients in cattle could be mosaic Klinefelters, interspecies hybrids, bulls with Sertoli cell-only syndrome, or bulls with disrupted germ cell migration caused by RNA interference.

Wheat Germ Oil Attenuates Gamma Radiation-Induced Skeletal ...

African Journals Online (AJOL)

Muscular strength is important in sport as well as in daily activities. Exposure to ionizing radiation is thought to increase oxidative stress and damage muscle tissue. Wheat germ oil is a natural unrefined vegetable oil. It is an excellent source of vitamin E, octacosanol, linoleic and linolenic essential fatty acids, which may be ...

Object Classification Using Airborne Multispectral LiDAR Data

Directory of Open Access Journals (Sweden)

PAN Suoyan

2018-02-01

Full Text Available Airborne multispectral LiDAR system,which obtains surface geometry and spectral data of objects,simultaneously,has become a fast effective,large-scale spatial data acquisition method.Multispectral LiDAR data are characteristics of completeness and consistency of spectrum and spatial geometric information.Support vector machine (SVM,a machine learning method,is capable of classifying objects based on small samples.Therefore,by means of SVM,this paper performs land cover classification using multispectral LiDAR data. First,all independent point cloud with different wavelengths are merged into a single point cloud,where each pixel contains the three-wavelength spectral information.Next,the merged point cloud is converted into range and intensity images.Finally,land-cover classification is performed by means of SVM.All experiments were conducted on the Optech Titan multispectral LiDAR data,containing three individual point cloud collected by 532 nm,1024 nm,and 1550 nm laser beams.Experimental results demonstrate that ①compared to traditional single-wavelength LiDAR data,multispectral LiDAR data provide a promising solution to land use and land cover applications;②SVM is a feasible method for land cover classification of multispectral LiDAR data.

Infrastructure Investment Protection with LiDAR

Science.gov (United States)

2012-10-15

The primary goal of this research effort was to explore the wide variety of uses of LiDAR technology and to evaluate their : applicability to NCDOT practices. NCDOT can use this information about LiDAR in determining how and when the : technology can...

Molecular biological features of male germ cell differentiation

Science.gov (United States)

HIROSE, MIKA; TOKUHIRO, KEIZO; TAINAKA, HITOSHI; MIYAGAWA, YASUSHI; TSUJIMURA, AKIRA; OKUYAMA, AKIHIKO; NISHIMUNE, YOSHITAKE

2007-01-01

Somatic cell differentiation is required throughout the life of a multicellular organism to maintain homeostasis. In contrast, germ cells have only one specific function; to preserve the species by conveying the parental genes to the next generation. Recent studies of the development and molecular biology of the male germ cell have identified many genes, or isoforms, that are specifically expressed in the male germ cell. In the present review, we consider the unique features of male germ cell differentiation. (Reprod Med Biol 2007; 6: 1–9) PMID:29699260

Processing LiDAR Data to Predict Natural Hazards

Science.gov (United States)

Fairweather, Ian; Crabtree, Robert; Hager, Stacey

2008-01-01

ELF-Base and ELF-Hazards (wherein 'ELF' signifies 'Extract LiDAR Features' and 'LiDAR' signifies 'light detection and ranging') are developmental software modules for processing remote-sensing LiDAR data to identify past natural hazards (principally, landslides) and predict future ones. ELF-Base processes raw LiDAR data, including LiDAR intensity data that are often ignored in other software, to create digital terrain models (DTMs) and digital feature models (DFMs) with sub-meter accuracy. ELF-Hazards fuses raw LiDAR data, data from multispectral and hyperspectral optical images, and DTMs and DFMs generated by ELF-Base to generate hazard risk maps. Advanced algorithms in these software modules include line-enhancement and edge-detection algorithms, surface-characterization algorithms, and algorithms that implement innovative data-fusion techniques. The line-extraction and edge-detection algorithms enable users to locate such features as faults and landslide headwall scarps. Also implemented in this software are improved methodologies for identification and mapping of past landslide events by use of (1) accurate, ELF-derived surface characterizations and (2) three LiDAR/optical-data-fusion techniques: post-classification data fusion, maximum-likelihood estimation modeling, and hierarchical within-class discrimination. This software is expected to enable faster, more accurate forecasting of natural hazards than has previously been possible.

Protective role of wheat germ oil on some biochemical parameters in irradiated rats

International Nuclear Information System (INIS)

Atia, A.I.; Darwish, M.M.; Sallam, M.H.

2006-01-01

Wheat germ oil is an organic nutritionally rich vegetable oil. It is an excellent source of vitamin E and essential fatty acids (octacosanol, linoleic and linolenic). The study confirmed the beneficial role of the used anti-oxidation agents as recommended radio-protectors due to their ability of scavenging free radicals produced by ionizing radiation. The efficacy of daily oral treatment of rats with wheat germ oil (10 mg/ Kg body wt) for 15 days to control many of the damaging effects of ionizing radiation when male rats were subjected to fractionated 8 Gy (2 Gy day after day) of gamma irradiation were studied. Blood samples were collected from animals at 10 and 15 days after treatment and/or exposure. In blood, the data obtained revealed that, radiation exposure caused significant increases in levels of malondialdehyde (MDA), triacylglycerol (TG), total cholesterol (TC), low-density lipoproteins (LDL) and glucose at the 10th day. Meanwhile, significant reduction in contents of total protein, albumin, globulins, high-density lipoproteins (HDL), vitamin E and glucose were recorded at the 15th day. Also, the majority of these parameters were estimated in liver tissues. The results revealed that administration of the natural product wheat germ oil partially ameliorated the radiation-induced biochemical disturbances. These effects were explained in the light of the presumed different mechanisms of wheat germ oil actions

Prática social e armadilhas das fontes: as fontes historiográficas e normativas sobre o casamento por rapto na Alta Idade Média

Directory of Open Access Journals (Sweden)

Sylvie Joye

2010-06-01

Full Text Available O casamento por rapto é uma prática reprovada e juridicamente condenada, mas, ao mesmo tempo, até certo ponto, tolerada socialmente, na alta Idade Média, no Ocidente. Assim, o estatuto atribuído às fontes normativas (em particular as leis bárbaras e a maneira pela qual alguns artigos de lei foram isolados de seu contexto documentário explicam, em grande parte, a razão de historiadores terem, por muito tempo, visto, no rapto, uma forma de casamento completo e uma sobrevivência de instituições "germânicas" antigas. Quanto às fontes narrativas, é imperativo não esquecer o contexto de sua redação, mesmo se, às vezes, ele parece relativamente neutro. De outra forma, corremos o risco de dar muito peso a alguns exemplos marginais ou pouco representativos. Recolocar no contexto dos documentos e da ideologia os retumbantes exemplos do período carolíngio permite, assim, relativizar a idéia de um crescimento importante do número de raptos nesta época.

Carlos Germán Belli e la sua poesia classica e anticlassica

Directory of Open Access Journals (Sweden)

Martha L. Canfield

2016-12-01

Full Text Available This article tries to provide the reader with the fundamental elements for a journey through Carlos Germán Belli’s poetry. The analysis starts from his life and the artistic situation in which he began to write, followed by examination of the peculiar features of his poetry as well as his search for consolation in writing and the metaphorical constructions (the cud created to explain the conflict between body and soul. In this analysis, the study of the relationship between classic and the avant-garde poetry is central, as is the close link between the modern and aesthetic criteria of the Old World, with which the author shapes a lexical and semantic mix, which allows him to express all the innate pain of humankind through topical themes with a unique exciting lyricism.

EMMPRIN (basigin/CD147) is involved in the morphogenesis of tooth germ in mouse molars.

Science.gov (United States)

Xie, Ming; Jiao, Ting; Chen, Yuqin; Xu, Chun; Li, Jing; Jiang, Xinquan; Zhang, Fuqiang

2010-05-01

The pattern of gene expression for extracellular matrix metalloproteinase inducer (EMMPRIN) was revealed in the tooth germ of mouse mandibular molars using quantitative real-time PCR. In situ hybridization and immunohistochemical study demonstrated the characteristic distribution of EMMPRIN in the different stages of tooth germ development. To investigate the functional role played by EMMPRIN in tooth germ development, EMMPRIN siRNA interference approach was carried out in cultured mouse mandibles at embryonic day 11.0 (E11.0). The results showed that EMMPRIN siRNA-treated explants exhibited a marked growth inhibition of tooth germ compared to the control and scrambled siRNA-treated explants. Meanwhile, a significant increase in MT1-MMP mRNA expression and a reduction in MMP-2, MMP-3, MMP-9, MMP-13 and MT2-MMP mRNA expression were observed in the mouse mandibles following EMMPRIN abrogation. The current results indicate that EMMPRIN could thus be involved in the early stage of tooth germ development and morphogenesis, possibly by regulating the expression of MMP genes.

Shipborne LiDAR system for coastal change monitoring

Science.gov (United States)

Kim, chang hwan; Park, chang hong; Kim, hyun wook; hyuck Kim, won; Lee, myoung hoon; Park, hyeon yeong

2016-04-01

Coastal areas, used as human utilization areas like leisure space, medical care, ports and power plants, etc., are regions that are continuously changing and interconnected with oceans and land and the sea level has risen by about 8cm (1.9mm / yr) due to global warming from 1964 year to 2006 year in Korea. Coastal erosion due to sea-level rise has caused the problem of marine ecosystems and loss of tourism resources, etc. Regular monitoring of coastal erosion is essential at key locations with such volatility. But the survey method of land mobile LiDAR (light detection and ranging) system has much time consuming and many restrictions. For effective monitoring beach erosion, KIOST (Korea Institute of Ocean Science & Technology) has constructed a shipborne mobile LiDAR system. The shipborne mobile LiDAR system comprised a land mobile LiDAR (RIEGL LMS-420i), an INS (inertial navigation system, MAGUS Inertial+), a RTKGPS (LEICA GS15 GS25), and a fixed platform. The shipborne mobile LiDAR system is much more effective than a land mobile LiDAR system in the measuring of fore shore areas without shadow zone. Because the vessel with the shipborne mobile LiDAR system is continuously moved along the shoreline, it is possible to efficiently survey a large area in a relatively short time. Effective monitoring of the changes using the constructed shipborne mobile LiDAR system for seriously eroded coastal areas will be able to contribute to coastal erosion management and response.

On the development of extragonadal and gonadal human germ cells

Directory of Open Access Journals (Sweden)

A. Marijne Heeren

2016-02-01

Full Text Available Human germ cells originate in an extragonadal location and have to migrate to colonize the gonadal primordia at around seven weeks of gestation (W7, or five weeks post conception. Many germ cells are lost along the way and should enter apoptosis, but some escape and can give rise to extragonadal germ cell tumors. Due to the common somatic origin of gonads and adrenal cortex, we investigated whether ectopic germ cells were present in the human adrenals. Germ cells expressing DDX4 and/or POU5F1 were present in male and female human adrenals in the first and second trimester. However, in contrast to what has been described in mice, where ‘adrenal’ and ‘ovarian’ germ cells seem to enter meiosis in synchrony, we were unable to observe meiotic entry in human ‘adrenal’ germ cells until W22. By contrast, ‘ovarian’ germ cells at W22 showed a pronounced asynchronous meiotic entry. Interestingly, we observed that immature POU5F1+ germ cells in both first and second trimester ovaries still expressed the neural crest marker TUBB3, reminiscent of their migratory phase. Our findings highlight species-specific differences in early gametogenesis between mice and humans. We report the presence of a population of ectopic germ cells in the human adrenals during development.

Line-Based Registration of Panoramic Images and LiDAR Point Clouds for Mobile Mapping

Directory of Open Access Journals (Sweden)

Tingting Cui

2016-12-01

Full Text Available For multi-sensor integrated systems, such as the mobile mapping system (MMS, data fusion at sensor-level, i.e., the 2D-3D registration between an optical camera and LiDAR, is a prerequisite for higher level fusion and further applications. This paper proposes a line-based registration method for panoramic images and a LiDAR point cloud collected by a MMS. We first introduce the system configuration and specification, including the coordinate systems of the MMS, the 3D LiDAR scanners, and the two panoramic camera models. We then establish the line-based transformation model for the panoramic camera. Finally, the proposed registration method is evaluated for two types of camera models by visual inspection and quantitative comparison. The results demonstrate that the line-based registration method can significantly improve the alignment of the panoramic image and the LiDAR datasets under either the ideal spherical or the rigorous panoramic camera model, with the latter being more reliable.

Darüşşifas Where Music Threapy was Practiced During Anatolian Seljuks and Ottomans

Directory of Open Access Journals (Sweden)

Gülşen Erdal

2013-03-01

günümüzde açıkça bilinmektedir. Bilinen en eski tedavi yöntemlerinden biri olan Müzikle tedavinin geçmişi binlerce yıl öncesine dayanır. Türklerin, müzikle tedavide İbn Sina, Razî, Farabî, Hasan Şuurî ve Gevrekzade Hasan Efendi gibi bilim adamlarının yaptıkları araştırmaların yer aldığı kitaplardan faydalanarak, Selçuklu ve Osmanlılar döneminde, akıl hastalıklarının tedavisine uygun akustikle inşa edilen hastaneler-darüşşifalarda kullanmaları, ilk ciddi müzikle tedavi uygulamaları olarak değerlendirilir. Darüşşifa, Türk ve İslam dünyasında pratiğe ve gözleme dayalı sağlık hizmetleri veren hastaları tedavi eden sağlık ve eğitim kurumlarına verilen isimlerden birisidir. Darüşşifalar Tıp mesleğinin uygulanmasına yönelik özel mimari anlayış içeren yapıları ile de ayrıcalıklı bir yere sahiptir. Türkler Anadolu’ya yerleşmeleri ile birlikte çeşitli imar faaliyetlerine başlamışlardır. Yapılan bu faaliyetler içerisinde kervansaraylar, medreseler ve camilerle birlikte darüşşifalar da bulunmaktadır. Selçuklu ve Osmanlı darüşşifalarında tıbbi konular araştırmalara ve bilimsel esaslara bağlı kalınarak işleniyor, aynı zamanda tıp medreselerinde cerrah yetiştiriliyordu. Yapılan eğitimler dışında tatbiki uygulamaların da yaptırıldığı bilinmektedir. Darrüşşifalar, Anadolu Selçuklu ve Osmanlı medreseleri plan şemasına uygun olarak tasarlanmıştır. Genelde derslerin verildiği ana eyvan ve farklı ihtiyaçlar için düzenlenmiş avlu etrafında yer alan odalardan oluşmaktaydı.Türk sanat tarihi içerisinde sıklıkla karşılaştığımız tıp siteleri aynı zamanda günümüz tıp fakültesi mantığı ile örtüşmektedir. Buralarda tedavi edici sağlık hizmetleri sunulmaktaydı. Müzikle tedavi yapılan darüşşifalardan günümüze ulaşan ve önem teşkil edenler bu çalışmada sanat tarihi ve müziğin iyileştirici gücünün yüzyıllar �

2012-2013 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Hoh River Watershed, Washington (Deliveries 1 and 2)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Watershed Sciences, Inc. (WSI) collected Light Detection and Ranging (LiDAR) data on the Hoh River watershed survey area for the Puget Sound LiDAR Consortium and the...

2005 Mississippi Merged LiDAR Data (2005 LiDAR data merged with 2005 Post-Katrina LiDAR data to create a bare-earth product for flood plain mapping in coastal Mississippi).

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Pre- and post-hurricane Katrina LiDAR datasets of Hancock, Harrison, and Jackson Counties, MS, were merged into a seamless coverage by URS. The pre-Katrina LiDAR...

Germ cell regeneration-mediated, enhanced mutagenesis in the ascidian Ciona intestinalis reveals flexible germ cell formation from different somatic cells.

Science.gov (United States)

Yoshida, Keita; Hozumi, Akiko; Treen, Nicholas; Sakuma, Tetsushi; Yamamoto, Takashi; Shirae-Kurabayashi, Maki; Sasakura, Yasunori

2017-03-15

The ascidian Ciona intestinalis has a high regeneration capacity that enables the regeneration of artificially removed primordial germ cells (PGCs) from somatic cells. We utilized PGC regeneration to establish efficient methods of germ line mutagenesis with transcription activator-like effector nucleases (TALENs). When PGCs were artificially removed from animals in which a TALEN pair was expressed, somatic cells harboring mutations in the target gene were converted into germ cells, this germ cell population exhibited higher mutation rates than animals not subjected to PGC removal. PGC regeneration enables us to use TALEN expression vectors of specific somatic tissues for germ cell mutagenesis. Unexpectedly, cis elements for epidermis, neural tissue and muscle could be used for germ cell mutagenesis, indicating there are multiple sources of regenerated PGCs, suggesting a flexibility of differentiated Ciona somatic cells to regain totipotency. Sperm and eggs of a single hermaphroditic, PGC regenerated animal typically have different mutations, suggesting they arise from different cells. PGCs can be generated from somatic cells even though the maternal PGCs are not removed, suggesting that the PGC regeneration is not solely an artificial event but could have an endogenous function in Ciona. This study provides a technical innovation in the genome-editing methods, including easy establishment of mutant lines. Moreover, this study suggests cellular mechanisms and the potential evolutionary significance of PGC regeneration in Ciona. Copyright © 2017 Elsevier Inc. All rights reserved.

Is Tobacco Smoke a Germ-Cell Mutagen?

Science.gov (United States)

Although no international organization exists to declare whether an agent is a germ-cell mutagen, tobacco smoke may be a human germ-cell mutagen. In the mouse, tobacco smoke induces a significant increase in the mutation frequency at an expanded simple tandem repeat (ESTR) locus....

Germ cell tumors in patients with disorders of sex development: Risk factors, initial developmental stages and targets for early diagnosis

NARCIS (Netherlands)

M.B.C.M. Cools (Martine)

2006-01-01

textabstractThis thesis describes the origin, identification and correct diagnosis of the earliest stages of malignant germ cell tumors, i.e. intra tubular germ cell neoplasia unclassified (ITGNU) and gonadoblastoma, in patients with disorders of sex development. Special attention is given to the

Immunofluorescence Analysis of Testicular Biopsies With Germ Cell and Sertoli Cell Markers Shows Significant MVH Negative Germ Cell Depletion With Older Age of Orchidopexy

DEFF Research Database (Denmark)

Li, Ruili; Thorup, Jørgen Mogens; Sun, Cong

2014-01-01

Undescended testis is the most common defect in newborn boys. It is associated with increased risks of infertility and testicular malignancy due to abnormal germ cell development in these testes. Early surgery may limit such risks. The aim of our study was to analyse germ cell development verses ...... age of orchidopexy using a germ cell marker and a Sertoli cell marker on testicular biopsies.......Undescended testis is the most common defect in newborn boys. It is associated with increased risks of infertility and testicular malignancy due to abnormal germ cell development in these testes. Early surgery may limit such risks. The aim of our study was to analyse germ cell development verses...

Stopping the Spread of Germs at Home, Work and School

Science.gov (United States)

... Pandemic Other Stopping the Spread of Germs at Home, Work & School Language: English (US) Español Recommend on Facebook ... everyone from getting germs or spreading germs at home, work, or school. Clean and disinfect surfaces or objects. ...

2013 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Nooksack

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In July 2012, WSI (Watershed Sciences, Inc.) was contracted by the Puget Sound LiDARConsortium (PSLC) to collect Light Detection and Ranging (LiDAR) data on a...

2013 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Entiat

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In October 2012, WSI (Watershed Sciences, Inc.) was contracted by the Puget Sound LiDARConsortium (PSLC) to collect Light Detection and Ranging (LiDAR) data for the...

Protective effect of vitamins C and E on Gamma radiation induced Genetic injuries in male mice germ cells

International Nuclear Information System (INIS)

Anwar, W.A.; El-Daway, H.A.E.; Tawfik, S.S.M.

1999-01-01

The effects of vitamins C and E on meiotic chromosomal metaphase-8 at diakinesis of the mouse to 3 Gy of whole body gamma- irradiation were studied. These vitamins were injected intraperitoneally as acute doses 2 hr before irradiation. Both vitamins significantly reduced the frequencies of chromosomal aberration in spermatic germ cells. The protective effect of vitamin E was greater than that afforded by vitamin C. A combined treatment of both vitamins resulted in additional protection over that offered by each vitamine alone. In all animal groups the most frequent aberration found was translocation in the from of either ring four (R IV) or chain four (C IV). The percentage of each or them was significantly increased in male mice sacrificed after 15 days post-irradiation. Other types of aberrations as autosomal univalent, X-Gamma univalent and polyploidy were rarely present

Analysis of inflow parameters using LiDARs

NARCIS (Netherlands)

Giyanani, A.H.; Bierbooms, W.A.A.M.; Van Bussel, G.J.W.

2014-01-01

Remote sensing of the atmospheric variables with the use of LiDAR is a relatively new technique for wind resource assessment and oncoming wind prediction in wind energy. The validation of LiDAR measurements and comparisons with other sensing elements thus, is of high importance for further

The Dar es Salaam Seascape: A Case Study of an Environmental ...

African Journals Online (AJOL)

These pressures have resulted in substantial negative environmental state changes, e.g., habitat loss and degradation, biodiversity loss and disturbance of food webs, and coastal erosion/accretion. Thus, the Dar es Salaam seascape has become an environmental “hotspot” of degradation, with consequent negative ...

Novel Methods for Measuring LiDAR

Science.gov (United States)

Ayrey, E.; Hayes, D. J.; Fraver, S.; Weiskittel, A.; Cook, B.; Kershaw, J.

2017-12-01

The estimation of forest biometrics from airborne LiDAR data has become invaluable for quantifying forest carbon stocks, forest and wildlife ecology research, and sustainable forest management. The area-based approach is arguably the most common method for developing enhanced forest inventories from LiDAR. It involves taking a series of vertical height measurements of the point cloud, then using those measurements with field measured data to develop predictive models. Unfortunately, there is considerable variation in methodology for collecting point cloud data, which can vary in pulse density, seasonality, canopy penetrability, and instrument specifications. Today there exists a wealth of public LiDAR data, however the variation in acquisition parameters makes forest inventory prediction by traditional means unreliable across the different datasets. The goal of this project is to test a series of novel point cloud measurements developed along a conceptual spectrum of human interpretability, and then to use the best measurements to develop regional enhanced forest inventories on Northern New England's and Atlantic Canada's public LiDAR. Similarly to a field-based inventory, individual tree crowns are being segmented, and summary statistics are being used as covariates. Established competition and structural indices are being generated using each tree's relationship to one another, whilst existing allometric equations are being used to estimate diameter and biomass of each tree measured in the LiDAR. Novel metrics measuring light interception, clusteredness, and rugosity are also being measured as predictors. On the other end of the human interpretability spectrum, convolutional neural networks are being employed to directly measure both the canopy height model, and the point clouds by scanning each using two and three dimensional kernals trained to identify features useful for predicting biological attributes such as biomass. Predictive models will be trained and

Multiphoton microscopy imaging of developing tooth germs

Directory of Open Access Journals (Sweden)

Pei-Yu Pan

2014-01-01

Conclusion: In this study, a novel multiphoton microscopy database of images from developing tooth germs in mice was set up. We confirmed that multiphoton laser microscopy is a powerful tool for investigating the development of tooth germ and is worthy for further application in the study of tooth regeneration.

[Germ cell membrane lipids in spermatogenesis].

Science.gov (United States)

Wang, Ting; Shi, Xiao; Quan, Song

2016-05-01

Spermatogenesis is a complex developmental process in which a diploid progenitor germ cell transforms into highly specialized spermatozoa. During spermatogenesis, membrane remodeling takes place, and cell membrane permeability and liquidity undergo phase-specific changes, which are all associated with the alteration of membrane lipids. Lipids are important components of the germ cell membrane, whose volume and ratio fluctuate in different phases of spermatogenesis. Abnormal lipid metabolism can cause spermatogenic dysfunction and consequently male infertility. Germ cell membrane lipids are mainly composed of cholesterol, phospholipids and glycolipids, which play critical roles in cell adhesion and signal transduction during spermatogenesis. An insight into the correlation of membrane lipids with spermatogenesis helps us to better understand the mechanisms of spermatogenesis and provide new approaches to the diagnosis and treatment of male infertility.

Modelling vertical error in LiDAR-derived digital elevation models

Science.gov (United States)

Aguilar, Fernando J.; Mills, Jon P.; Delgado, Jorge; Aguilar, Manuel A.; Negreiros, J. G.; Pérez, José L.

2010-01-01

A hybrid theoretical-empirical model has been developed for modelling the error in LiDAR-derived digital elevation models (DEMs) of non-open terrain. The theoretical component seeks to model the propagation of the sample data error (SDE), i.e. the error from light detection and ranging (LiDAR) data capture of ground sampled points in open terrain, towards interpolated points. The interpolation methods used for infilling gaps may produce a non-negligible error that is referred to as gridding error. In this case, interpolation is performed using an inverse distance weighting (IDW) method with the local support of the five closest neighbours, although it would be possible to utilize other interpolation methods. The empirical component refers to what is known as "information loss". This is the error purely due to modelling the continuous terrain surface from only a discrete number of points plus the error arising from the interpolation process. The SDE must be previously calculated from a suitable number of check points located in open terrain and assumes that the LiDAR point density was sufficiently high to neglect the gridding error. For model calibration, data for 29 study sites, 200×200 m in size, belonging to different areas around Almeria province, south-east Spain, were acquired by means of stereo photogrammetric methods. The developed methodology was validated against two different LiDAR datasets. The first dataset used was an Ordnance Survey (OS) LiDAR survey carried out over a region of Bristol in the UK. The second dataset was an area located at Gador mountain range, south of Almería province, Spain. Both terrain slope and sampling density were incorporated in the empirical component through the calibration phase, resulting in a very good agreement between predicted and observed data (R2 = 0.9856 ; p reasonably good fit to the predicted errors. Even better results were achieved in the more rugged morphology of the Gador mountain range dataset. The findings

Passivação da superfície do Germânio visando ao uso da nanoeletrônica

OpenAIRE

Jumir Vieira de Carvalho Júnior

2009-01-01

Investigamos a passivação superficial do Germânio visando ao uso em Nanoeletrônica, que requer: (i) preparação de uma superfície plana e isenta de contaminantes e (ii) crescimento ou deposição de um dielétrico termodinamicamente estável em contato com o substrato nos ambientes e temperaturas usuais na fabricação de dispositivos. Na primeira etapa do estudo, testamos diferentes hidrácidos halogênicos associados com água deionizada (DI) e soluções oxidantes para remover o óxido de germânio nati...

Upgrading transmission lines with aerial LiDAR technology

Energy Technology Data Exchange (ETDEWEB)

Koop, J.E. [Manitoba Hydro, Winnipeg, MB (Canada)

2003-04-01

LiDAR (Light Detection and Ranging) technology is described as an example of techniques used by hydro companies to increase their capacity with existing plants, and within tight budget constraints. LiDAR was chosen by Manitoba Hydro primarily because LiDAR's data collection method offers very fast turn-around time from collection to delivery, and most importantly because of LiDAR's highly accurate ability to map terrain and wire catenary shape in every span. The article describes a case study of the 'Nip and Tuck' method of wire re-tensioning based on LiDAR data, which was used by Manitoba Hydro to create a computer model of Saskatchewan Hydro's transmission line capacity on its 138 kV transmission line between Saskatoon and North Battleford. The model was needed to analyze the existing line conditions in an effort to minimize cascading failures on the 40-year old line. Using the 'Nip and Tuck' technology in combination with LiDAR, SaskPower engineers were able to complete the required modifications to raise transmission wire operating temperatures on the 135 km long line to 66 degree C in only 36 days, and at a cost that was 80 per cent less than the cost would have been using conventional techniques ($232,000 instead of the estimated $1.25 million).

Germ Cells are Made Semiotically Competent During Evolution

DEFF Research Database (Denmark)

Giorgi, Franco; Bruni, Luis Emilio

2016-01-01

Germ cells are cross-roads of development and evolution. They define the origin of every new generation and, at the same time, represent the biological end-product of any mature organism. Germ cells are endowed with the following capacities: (1) to store a self-descriptive program, (2......) to accumulate a protein-synthesizing machinery (ribosomes), and (3) to incorporate enough nourishment to sustain embryonic development (yolk). To accomplish this goal, germ cells do not simply unfold a pre-determined program or realize a sole instructive role. On the contrary, due to the complexity...... milieu and experience the compatibility of selected developmental sequences. The question of which signaling pathways are activated at each developmental stage does not result from a strictly predetermined program instructing germ cell stemness. Rather, each developmental sequence is an open...

Raster Vs. Point Cloud LiDAR Data Classification

Science.gov (United States)

El-Ashmawy, N.; Shaker, A.

2014-09-01

Airborne Laser Scanning systems with light detection and ranging (LiDAR) technology is one of the fast and accurate 3D point data acquisition techniques. Generating accurate digital terrain and/or surface models (DTM/DSM) is the main application of collecting LiDAR range data. Recently, LiDAR range and intensity data have been used for land cover classification applications. Data range and Intensity, (strength of the backscattered signals measured by the LiDAR systems), are affected by the flying height, the ground elevation, scanning angle and the physical characteristics of the objects surface. These effects may lead to uneven distribution of point cloud or some gaps that may affect the classification process. Researchers have investigated the conversion of LiDAR range point data to raster image for terrain modelling. Interpolation techniques have been used to achieve the best representation of surfaces, and to fill the gaps between the LiDAR footprints. Interpolation methods are also investigated to generate LiDAR range and intensity image data for land cover classification applications. In this paper, different approach has been followed to classifying the LiDAR data (range and intensity) for land cover mapping. The methodology relies on the classification of the point cloud data based on their range and intensity and then converted the classified points into raster image. The gaps in the data are filled based on the classes of the nearest neighbour. Land cover maps are produced using two approaches using: (a) the conventional raster image data based on point interpolation; and (b) the proposed point data classification. A study area covering an urban district in Burnaby, British Colombia, Canada, is selected to compare the results of the two approaches. Five different land cover classes can be distinguished in that area: buildings, roads and parking areas, trees, low vegetation (grass), and bare soil. The results show that an improvement of around 10 % in the

In vitro germ cell differentiation from cynomolgus monkey embryonic stem cells.

Directory of Open Access Journals (Sweden)

Kaori Yamauchi

Full Text Available BACKGROUND: Mouse embryonic stem (ES cells can differentiate into female and male germ cells in vitro. Primate ES cells can also differentiate into immature germ cells in vitro. However, little is known about the differentiation markers and culture conditions for in vitro germ cell differentiation from ES cells in primates. Monkey ES cells are thus considered to be a useful model to study primate gametogenesis in vitro. Therefore, in order to obtain further information on germ cell differentiation from primate ES cells, this study examined the ability of cynomolgus monkey ES cells to differentiate into germ cells in vitro. METHODS AND FINDINGS: To explore the differentiation markers for detecting germ cells differentiated from ES cells, the expression of various germ cell marker genes was examined in tissues and ES cells of the cynomolgus monkey (Macaca fascicularis. VASA is a valuable gene for the detection of germ cells differentiated from ES cells. An increase of VASA expression was observed when differentiation was induced in ES cells via embryoid body (EB formation. In addition, the expression of other germ cell markers, such as NANOS and PIWIL1 genes, was also up-regulated as the EB differentiation progressed. Immunocytochemistry identified the cells expressing stage-specific embryonic antigen (SSEA 1, OCT-4, and VASA proteins in the EBs. These cells were detected in the peripheral region of the EBs as specific cell populations, such as SSEA1-positive, OCT-4-positive cells, OCT-4-positive, VASA-positive cells, and OCT-4-negative, VASA-positive cells. Thereafter, the effect of mouse gonadal cell-conditioned medium and growth factors on germ cell differentiation from monkey ES cells was examined, and this revealed that the addition of BMP4 to differentiating ES cells increased the expression of SCP1, a meiotic marker gene. CONCLUSION: VASA is a valuable gene for the detection of germ cells differentiated from ES cells in monkeys, and the

2011 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Rattlesnake

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Watershed Sciences, Inc. (WSI) collected Light Detection and Ranging (LiDAR) data on six days between September 15th and November 5th, and from November 6th - 13th,...

Simulation of Satellite, Airborne and Terrestrial LiDAR with DART (I):Waveform Simulation with Quasi-Monte Carlo Ray Tracing

Science.gov (United States)

Gastellu-Etchegorry, Jean-Philippe; Yin, Tiangang; Lauret, Nicolas; Grau, Eloi; Rubio, Jeremy; Cook, Bruce D.; Morton, Douglas C.; Sun, Guoqing

2016-01-01

Light Detection And Ranging (LiDAR) provides unique data on the 3-D structure of atmosphere constituents and the Earth's surface. Simulating LiDAR returns for different laser technologies and Earth scenes is fundamental for evaluating and interpreting signal and noise in LiDAR data. Different types of models are capable of simulating LiDAR waveforms of Earth surfaces. Semi-empirical and geometric models can be imprecise because they rely on simplified simulations of Earth surfaces and light interaction mechanisms. On the other hand, Monte Carlo ray tracing (MCRT) models are potentially accurate but require long computational time. Here, we present a new LiDAR waveform simulation tool that is based on the introduction of a quasi-Monte Carlo ray tracing approach in the Discrete Anisotropic Radiative Transfer (DART) model. Two new approaches, the so-called "box method" and "Ray Carlo method", are implemented to provide robust and accurate simulations of LiDAR waveforms for any landscape, atmosphere and LiDAR sensor configuration (view direction, footprint size, pulse characteristics, etc.). The box method accelerates the selection of the scattering direction of a photon in the presence of scatterers with non-invertible phase function. The Ray Carlo method brings traditional ray-tracking into MCRT simulation, which makes computational time independent of LiDAR field of view (FOV) and reception solid angle. Both methods are fast enough for simulating multi-pulse acquisition. Sensitivity studies with various landscapes and atmosphere constituents are presented, and the simulated LiDAR signals compare favorably with their associated reflectance images and Laser Vegetation Imaging Sensor (LVIS) waveforms. The LiDAR module is fully integrated into DART, enabling more detailed simulations of LiDAR sensitivity to specific scene elements (e.g., atmospheric aerosols, leaf area, branches, or topography) and sensor configuration for airborne or satellite LiDAR sensors.

High resolution, topobathymetric LiDAR coastal zone characterization in Denmark

DEFF Research Database (Denmark)

Steinbacher, Frank; Baran, Ramona; Andersen, Mikkel S.

2016-01-01

Coastal and tidal environments are valuable ecosystems, which, however, are under pressure in many areas around the world due to globalization and/or climate change. Detailed mapping of these environments is required in order to manage the coastal zone in a sustainable way. However, historically...... locations with different environmental settings. We demonstrate the potential of using airborne topobathymetric LiDAR for seamless mapping of land-water transition zones in challenging coastal environments, e.g. in an environment with high water column turbidity and continuously varying water levels due...... these transition zones between land and water are difficult or even impossible to map and investigate in high spatial resolution due to the challenging environmental conditions. The new generation of airborne topobathymetric light detection and ranging (LiDAR) potentially enables full-coverage and high...

Waveform LiDAR across forest biomass gradients

Science.gov (United States)

Montesano, P. M.; Nelson, R. F.; Dubayah, R.; Sun, G.; Ranson, J.

2011-12-01

Detailed information on the quantity and distribution of aboveground biomass (AGB) is needed to understand how it varies across space and changes over time. Waveform LiDAR data is routinely used to derive the heights of scattering elements in each illuminated footprint, and the vertical structure of vegetation is related to AGB. Changes in LiDAR waveforms across vegetation structure gradients can demonstrate instrument sensitivity to land cover transitions. A close examination of LiDAR waveforms in footprints across a forest gradient can provide new insight into the relationship of vegetation structure and forest AGB. In this study we use field measurements of individual trees within Laser Vegetation Imaging Sensor (LVIS) footprints along transects crossing forest to non-forest gradients to examine changes in LVIS waveform characteristics at sites with low (field AGB measurements to original and adjusted LVIS waveforms to detect the forest AGB interval along a forest - non-forest transition in which the LVIS waveform lose the ability to discern differences in AGB. Our results help identify the lower end the forest biomass range that a ~20m footprint waveform LiDAR can detect, which can help infer accumulation of biomass after disturbances and during forest expansion, and which can guide the use of LiDAR within a multi-sensor fusion biomass mapping approach.

Childhood Central Nervous System Germ Cell Tumors Treatment

Science.gov (United States)

... make hormones. Yolk sac tumors make the hormone alpha-fetoprotein (AFP). Mixed germ cell tumors are made of ... used to diagnose some CNS germ cell tumors: Alpha-fetoprotein (AFP). Beta-human chorionic gonadotropin (β-hCG). Blood ...

Lin28a regulates germ cell pool size and fertility

Science.gov (United States)

Shinoda, Gen; de Soysa, T. Yvanka; Seligson, Marc T.; Yabuuchi, Akiko; Fujiwara, Yuko; Huang, Pei Yi; Hagan, John P.; Gregory, Richard I.; Moss, Eric G.; Daley, George Q.

2013-01-01

Overexpression of LIN28A is associated with human germ cell tumors and promotes primordial germ cell (PGC) development from embryonic stem cells in vitro and in chimeric mice. Knockdown of Lin28a inhibits PGC development in vitro, but how constitutional Lin28a deficiency affects the mammalian reproductive system in vivo remains unknown. Here, we generated Lin28a knockout (KO) mice and found that Lin28a deficiency compromises the size of the germ cell pool in both males and females by affecting PGC proliferation during embryogenesis. Interestingly however, in Lin28a KO males the germ cell pool partially recovers during postnatal expansion, while fertility remains impaired in both males and females mated to wild type mice. Embryonic overexpression of let-7, a microRNA negatively regulated by Lin28a, reduces the germ cell pool, corroborating the role of the Lin28a/let-7 axis in regulating the germ lineage. PMID:23378032

The role of sex chromosomes in mammalian germ cell differentiation: can the germ cells carrying X and Y chromosomes differentiate into fertile oocytes?

Directory of Open Access Journals (Sweden)

Teruko Taketo

2015-06-01

Full Text Available The sexual differentiation of germ cells into spermatozoa or oocytes is strictly regulated by their gonadal environment, testis or ovary, which is determined by the presence or absence of the Y chromosome, respectively. Hence, in normal mammalian development, male germ cells differentiate in the presence of X and Y chromosomes, and female germ cells do so in the presence of two X chromosomes. However, gonadal sex reversal occurs in humans as well as in other mammalian species, and the resultant XX males and XY females can lead healthy lives, except for a complete or partial loss of fertility. Germ cells carrying an abnormal set of sex chromosomes are efficiently eliminated by multilayered surveillance mechanisms in the testis, and also, though more variably, in the ovary. Studying the molecular basis for sex-specific responses to a set of sex chromosomes during gametogenesis will promote our understanding of meiotic processes contributing to the evolution of sex determining mechanisms. This review discusses the fate of germ cells carrying various sex chromosomal compositions in mouse models, the limitation of which may be overcome by recent successes in the differentiation of functional germ cells from embryonic stem cells under experimental conditions.

Tine Germ: Smrt kraljuje povsod in bela Smrt triumfira: Valvasorjevo Prizorišče človeške smrti v evropskem kontekstu

Directory of Open Access Journals (Sweden)

Luka Vidmar

2017-07-01

Full Text Available Tine Germ: Smrt kraljuje povsod in bela Smrt triumfira:  Valvasorjevo Prizorišče človeške smrti v evropskem kontekstu Ljubljana: Znanstvena založba Filozofske fakultete Univerze v Ljubljani, 2015, 176 strani, 68 ilustracij Umetnostni zgodovinar Tine Germ je v zadnjih letih Valvasorjevemu delu Theatrum mortis humanae tripartitum iz leta 1682 posvetil vrsto raziskav, njihove ugotovitve pa je leta 2015 razširil in povezal še v monografijo Smrt kraljuje povsod in bela Smrt triumfira. Raziskave so bile vsekakor potrebne: Prizorišče človeške smrti je bilo namreč do tedaj v slovenski umetnostni, literarni in kulturni zgodovini kljub pomembnosti avtorja in kljub primerljivosti z najkvalitetnejšimi sorodnimi deli iz drugih evropskih dežel skoraj prezrto ali vsaj zelo pomanjkljivo obravnavano. Raziskave so bile tudi uspešne: prvič so prinesle poglobljeno ikonografsko analizo omenjenega polihistorjevega dela in prvič obširneje opisale njegovo mesto v sočasni evropski likovni in literarni umetnosti. Iz uvoda k monografiji Smrt kraljuje povsod in bela Smrt triumfira je jasno razvidno, da je bilo to mogoče najprej zato, ker je avtor kritično dekonstruiral tradicionalne paradigme, zlasti (umetnostnih ali literarnih »centrov« oziroma »obrobij«, pa tudi (slogovne ali idejne »naprednosti« oziroma »zaostalosti«, ki so v humanističnih vedah ovirale in v določeni meri še vedno ovirajo neobremenjeno raziskovanje del, kakršno je Prizorišče človeške smrti. Germova monografija nas tako že na začetku implicitno opozarja, da čaka na temeljitejšo znanstveno obravnavo še veliko umetniških in literarnih del, nastalih na Slovenskem v srednjem in zgodnjem novem veku, ki smo jih puščali ob strani zaradi različnih predsodkov, oblikovanih v 19. in 20. stoletju.

2005 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Lewis County

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Terrapoint collected Light Detection and Ranging (LiDAR) data for the Lewis County project of 2005. The project site covered approximately 223 square miles, divided...

Germ cell development in the Honeybee (Apis mellifera; Vasa and Nanos expression

Directory of Open Access Journals (Sweden)

Dearden Peter K

2006-02-01

Full Text Available Abstract Background Studies of specification of germ-cells in insect embryos has indicated that in many taxa the germ cells form early in development, and their formation is associated with pole plasm, germ plasm or an organelle called the oosome. None of these morphological features associated with germ cell formation have been identified in the Honeybee Apis mellifera. In this study I report the cloning and expression analysis of Honeybee homologues of vasa and nanos, germ cell markers in insects and other animals. Results Apis vasa and nanos RNAs are present in early honeybee embryos, but the RNAs clear rapidly, without any cells expressing these germ cell markers past stage 2. These genes are then only expressed in a line of cells in the abdomen from stage 9 onwards. These cells are the developing germ cells that are moved dorsally by dorsal closure and are placed in the genital ridge. Conclusion This study of the expression of germ cell markers in the honeybee implies that in this species either germ cells are formed by an inductive event, late in embryogenesis, or they are formed early in development in the absence of vasa and nanos expression. This contrasts with germ cell development in other members of the Hymenoptera, Diptera and Lepidoptera.

2005 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Olympic Peninsula

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Terrapoint collected Light Detection and Ranging (LiDAR) data for the Olympic Peninsula project of 2005, totaling approximately 114.59 sq mi: 24.5 for Clallam...

2006 OSIP OGRIP: Upland Counties LiDAR Survey

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The 2006 OSIP digital LiDAR data was collected during the months of March and May (leaf-off conditions). The LiDAR covers the entire land area of the northern tier...

Assessing LiDAR elevation data for KDOT applications.

Science.gov (United States)

2013-02-01

LiDAR-based elevation surveys are a cost-effective means for mapping topography over large areas. LiDAR : surveys use an airplane-mounted or ground-based laser radar unit to scan terrain. Post-processing techniques are : applied to remove vegetation ...

20-year LiDAR observations of stratospheric sudden warming over a mid-latitude site, Observatoire de Haute Provence (44°N, 6°E): Case study and statistical characteristics

CSIR Research Space (South Africa)

Charyulu, DV

2007-11-01

Full Text Available The present study delineates the characteristics of Stratospheric Sudden Warming (SSW) events observed over the Observatoire de Haute Provence (OHP: 44°N, 6°E). The study uses 20 years of Rayleigh LiDAR temperature measurements for the 1982...

Flying Under the LiDAR: Relating Forest Structure to Bat Community Diversity

Science.gov (United States)

Swanson, A. C.; Weishampel, J. F.

2015-12-01

Bats are important to many ecological processes such as pollination, insect (and by proxy, disease) control, and seed dispersal and can be used to monitor ecosystem health. However, they are facing unprecedented extinction risks from habitat degradation as well as pressures from pathogens (e.g., white-nose syndrome) and wind turbines. LiDAR allows ecologists to measure structural variables of forested landscapes with increased precision and accuracy at broader spatial scales than previously possible. This study used airborne LiDAR to classify forest habitat/canopy structure at the Ordway-Swisher Biological Station (OSBS) in north central Florida. LiDAR data were acquired by the NEON airborne observation platform in summer 2014. OSBS consists of open-canopy pine savannas, closed-canopy hardwood hammocks, and seasonally wet prairies. Multiple forest structural parameters (e.g., mean, maximum, and standard deviation of height returns) were derived from LiDAR point clouds using the USDA software program FUSION. K-means clustering was used to segregate each 5x5 m raster across the ~3765 ha OSBS area into six different clusters based on the derived canopy metrics. Cluster averages for maximum, mean, and standard deviation of return heights ranged from 0 to 19.4 m, 0 to 15.3 m, and 0 to 3.0 m, respectively. To determine the relationships among these landscape-canopy features and bat species diversity and abundances, AnaBat II bat detectors were deployed from May to September in 2015 stratified by these distinct clusters. Bat calls were recorded from sunset to sunrise during each sampling period. Species were identified using AnalookW. A statistical regression model selection approach was performed in order to evaluate how forest attributes such as understory clutter, open regions, open and closed canopy, etc. influence bat communities. This knowledge provides a deeper understanding of habitat-species interactions to better manage survival of these species.

Drainage Structure Datasets and Effects on LiDAR-Derived Surface Flow Modeling

Directory of Open Access Journals (Sweden)

Ruopu Li

2013-12-01

Full Text Available With extraordinary resolution and accuracy, Light Detection and Ranging (LiDAR-derived digital elevation models (DEMs have been increasingly used for watershed analyses and modeling by hydrologists, planners and engineers. Such high-accuracy DEMs have demonstrated their effectiveness in delineating watershed and drainage patterns at fine scales in low-relief terrains. However, these high-resolution datasets are usually only available as topographic DEMs rather than hydrologic DEMs, presenting greater land roughness that can affect natural flow accumulation. Specifically, locations of drainage structures such as road culverts and bridges were simulated as barriers to the passage of drainage. This paper proposed a geospatial method for producing LiDAR-derived hydrologic DEMs, which incorporates data collection of drainage structures (i.e., culverts and bridges, data preprocessing and burning of the drainage structures into DEMs. A case study of GIS-based watershed modeling in South Central Nebraska showed improved simulated surface water derivatives after the drainage structures were burned into the LiDAR-derived topographic DEMs. The paper culminates in a proposal and discussion of establishing a national or statewide drainage structure dataset.

Germ line determinants are not localized early in sea urchin development, but do accumulate in the small micromere lineage.

Science.gov (United States)

Juliano, Celina E; Voronina, Ekaterina; Stack, Christie; Aldrich, Maryanna; Cameron, Andrew R; Wessel, Gary M

2006-12-01

Two distinct modes of germ line determination are used throughout the animal kingdom: conditional-an inductive mechanism, and autonomous-an inheritance of maternal factors in early development. This study identifies homologs of germ line determinants in the sea urchin Strongylocentrotus purpuratus to examine its mechanism of germ line determination. A list of conserved germ-line associated genes from diverse organisms was assembled to search the S. purpuratus genome for homologs, and the expression patterns of these genes were examined during embryogenesis by whole mount in situ RNA hybridization and QPCR. Of the 14 genes tested, all transcripts accumulate uniformly during oogenesis and Sp-pumilio, Sp-tudor, Sp-MSY, and Sp-CPEB1 transcripts are also uniformly distributed during embryonic development. Sp-nanos2, Sp-seawi, and Sp-ovo transcripts, however, are enriched in the vegetal plate of the mesenchyme blastula stage and Sp-vasa, Sp-nanos2, Sp-seawi, and Sp-SoxE transcripts are localized in small micromere descendents at the tip of the archenteron during gastrulation and are then enriched in the left coelomic pouch of larvae. The results of this screen suggest that sea urchins conditionally specify their germ line, and support the hypothesis that this mechanism is the basal mode of germ line determination amongst deuterostomes. Furthermore, accumulation of germ line determinants selectively in small micromere descendents supports the hypothesis that these cells contribute to the germ line.

Diversity arrays technology (DArT) markers in apple for genetic linkage maps

OpenAIRE

Schouten, H.J.; Weg, van de, W.E.; Carling, J.; Khan, S.A.; McKay, S.J.; Kaauwen, van, M.P.W.

2012-01-01

Diversity Arrays Technology (DArT) provides a high-throughput whole-genome genotyping platform for the detection and scoring of hundreds of polymorphic loci without any need for prior sequence information. The work presented here details the development and performance of a DArT genotyping array for apple. This is the first paper on DArT in horticultural trees. Genetic mapping of DArT markers in two mapping populations and their integration with other marker types showed that DArT is a powerf...

Diversity arrays technology (DArT) markers in apple for genetic linkage maps

OpenAIRE

Schouten, Henk J.; van de Weg, W. Eric; Carling, Jason; Khan, Sabaz Ali; McKay, Steven J.; van Kaauwen, Martijn P. W.; Wittenberg, Alexander H. J.; Koehorst-van Putten, Herma J. J.; Noordijk, Yolanda; Gao, Zhongshan; Rees, D. Jasper G.; Van Dyk, Maria M.; Jaccoud, Damian; Considine, Michael J.; Kilian, Andrzej

2011-01-01

Diversity Arrays Technology (DArT) provides a high-throughput whole-genome genotyping platform for the detection and scoring of hundreds of polymorphic loci without any need for prior sequence information. The work presented here details the development and performance of a DArT genotyping array for apple. This is the first paper on DArT in horticultural trees. Genetic mapping of DArT markers in two mapping populations and their integration with other marker types showed that DArT is a powerf...

ATTEMPT TO APPLY STABILIZED WHEAT GERM FOR BREAD SUPPLEMENTATION

Directory of Open Access Journals (Sweden)

Halina Gambuś

2015-02-01

Full Text Available The increased interest in rational nutrition causes, that from many years is observed a growing consumption of bread, and novel food supplemented with health promoting components. For the bread production in Poland mainly wheat and rye cake flours are used, depleted of a many valuable nutrients such as protein, dietary fibre, minerals and vitamins. Because of their unique chemical composition wheat germs are a particularly valuable resource, both for direct consumption and to enhance the nutritional value of food products. The aim of the study was to prepare wheat bread with a 10% addition of commercial stabilized wheat germs. Based on the obtained results, it was found that wheat germs, due to their unique chemical composition, were a particularly valuable resource to supplement the nutritional value of bread. However, germs had detrimental effect on mechanical properties of dough, and on bread quality. Texture of bread crumb and its chemical composition were analysed. It was shown, that germs subjected to fermentation process could be used in wheat bread production as dietary fibre and mineral compound supplement.

Portable and Airborne Small Footprint LiDAR: Forest Canopy Structure Estimation of Fire Managed Plots

Directory of Open Access Journals (Sweden)

Claudia M.C.S. Listopad

2011-06-01

Full Text Available This study used an affordable ground-based portable LiDAR system to provide an understanding of the structural differences between old-growth and secondary-growth Southeastern pine. It provided insight into the strengths and weaknesses in the structural determination of portable systems in contrast to airborne LiDAR systems. Portable LiDAR height profiles and derived metrics and indices (e.g., canopy cover, canopy height were compared among plots with different fire frequency and fire season treatments within secondary forest and old growth plots. The treatments consisted of transitional season fire with four different return intervals: 1-yr, 2-yr, 3-yr fire return intervals, and fire suppressed plots. The remaining secondary plots were treated using a 2-yr late dormant season fire cycle. The old growth plots were treated using a 2-yr growing season fire cycle. Airborne and portable LiDAR derived canopy cover were consistent throughout the plots, with significantly higher canopy cover values found in 3-yr and fire suppressed plots. Portable LiDAR height profile and metrics presented a higher sensitivity in capturing subcanopy elements than the airborne system, particularly in dense canopy plots. The 3-dimensional structures of the secondary plots with varying fire return intervals were dramatically different to old-growth plots, where a symmetrical distribution with clear recruitment was visible. Portable LiDAR, even though limited to finer spatial scales and specific biases, is a low-cost investment with clear value for the management of forest canopy structure.

Biochemical Intestinal Parameters in Germ-free Minipigs and Rats and in Ex-germ-free Minipigs and Rats Monoassociated with Escherichia coli

Czech Academy of Sciences Publication Activity Database

Cardona, M.,E.; Kozáková, Hana; Collinder, E.; Persson, A.-K.; Midtvedt, T.; Norin, E.

2005-01-01

Roč. 52, - (2005), s. 109-113 ISSN 1548-9213 R&D Projects: GA AV ČR IAA5020101 Institutional research plan: CEZ:AV0Z5020903 Keywords : germ-free * minipigs * ex-germ-free Subject RIV: EE - Microbiology, Virology Impact factor: 2.111, year: 2005

Soy Germ Protein With or Without-Zn Improve Plasma Lipid Profile in Metabolic Syndrome Women

Directory of Open Access Journals (Sweden)

SIWI PRAMATAMA MARS WIJAYANTI

2012-03-01

Full Text Available The aim of this research was to determine the effect of soy germ protein on lipid profile of metabolic syndrome (MetS patients. Respondents were 30 women with criteria, i.e. blood glucose level > normal, body mass index > 25 kg/m2, hypertriglyceridemia, low cholesterol-HDL level, 40-65 years old, living in Purwokerto, and signed the informed consent. The project was approved by the ethics committee of the Medical Faculty from Gadjah Mada University-Yogyakarta. Respondents were divided into three randomly chosen groups consisting of ten women each. The first, second, and third groups were treated, respectively, with milk enriched soy germ protein plus Zn, milk enriched soy germ protein (without Zn, and placebo for two months. Blood samples were taken at baseline, one and two months after observation. Two months after observation the groups consuming milk enriched with soy germ protein, both with or without Zn, had their level of cholesterol-total decrease from 215.8 to 180.2 mg/dl (P = 0.03, triglyceride from 240.2 to 162.5 mg/dl (P = 0.02, and LDL from 154.01 to 93.85 mg/dl (P = 0.03. In contrast, HDL increased from 38.91 to 49.49 mg/dl (P = 0.0008. In conclusion, soy germ protein can improve lipid profile, thus it can inhibit atherosclerosis incident.

2004 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Portland, Oregon

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The all returns ASCII files contain the X,Y,Z values of all the LiDAR returns collected during the survey mission. In addition each return also has a time stamp,...

Study on environmental test technology of LiDAR used for vehicle

Science.gov (United States)

Wang, Yi; Yang, Jianfeng; Ou, Yong

2018-03-01

With the development of intelligent driving, the LiDAR used for vehicle plays an important role in it, in some extent LiDAR is the key factor of intelligent driving. And environmental adaptability is one critical factor of quality, it relates success or failure of LiDAR. This article discusses about the environment and its effects on LiDAR used for vehicle, it includes analysis of any possible environment that vehicle experiences, and environmental test design.

Wheat Germ Oil Attenuates Gamma Radiation- Induced Skeletal Muscles Damage in Rats

International Nuclear Information System (INIS)

Said, U.Z.; Saada, H.N.; Shedid, Sh.M.; Mahdy, E.M.E.; Shousha, W.Gh.

2008-01-01

Muscular strength is important in sport as well as in daily activities. Exposure to ionizing radiation is thought to increase oxidative stress and damage muscle tissue. Wheat germ oil is a natural unrefined vegetable oil. It is an excellent source of vitamin E, octacosanol, linoleic and linolenic essential fatty acids, which may be beneficial in neutralizing the free oxygen radicals. The present study was designed to investigate the efficacy of wheat germ oil, on radiation-induced oxidative damage in rats skeletal muscle. Wheat germ oil was supplemented orally via gavages to rats at a dose of 54 mg/ kg body weight/day for 14 successive days pre- and 7 post-exposure to 5 Gy (one shot dose) of whole body gamma irradiation. Animals were sacrificed 7, 14 and 21 days post radiation exposure. The results revealed that whole body gamma-irradiation of rats induces oxidative stress in skeletal muscles obvious by significant elevation in the level of thiobarbituric acid reactive substances (TBARS) associated with significant decreases in the content of reduced glutathione (GSE1), as well as decreases in superoxide dismutase (SOD), catalase (CAT) and glutathione peroxidase (GSH-Px) activities. Irradiated rats showed, also, significant decreases in creatine phosphokinase (CPK), glutamate dehydrogenase (GDH) and glucose-6-phosphate dehydrogenase (G-6-PD) activities. Furthermore, total iron, total copper and total calcium levels were significantly increased in skeletal muscles of irradiated rats group compared to control group. Wheat germ oil treated-irradiated rats showed significantly less sever damage and remarkable improvement in all the measured parameters, compared to irradiated rats. It could be concluded that wheat germ oil by attenuating radiation induced oxidative stress might play a role in maintaining skeletal muscle integrity

Assessment on Vulnerable Youths Integration to Dar es Salaam ...

African Journals Online (AJOL)

Assessment on Vulnerable Youths Integration to Dar es Salaam Solid Waste ... existing municipal solid waste management crisis facing Dar es Salaam City using ... enabling environment of turning rampant solid waste collection a commercial ...

Great migration: epigenetic reprogramming and germ cell-oocyte metamorphosis determine individual ovarian reserve.

Science.gov (United States)

Celik, Onder; Aygun, Banu Kumbak; Celik, Nilufer; Aydin, Suleyman; Haberal, Esra Tustas; Sahin, Levent; Yavuz, Yasemin; Celik, Sudenaz

2016-01-01

Emigration is defined as a synchronized movement of germ cells between the yolk sack and genital ridges. The miraculous migration of germ cells resembles the remigration of salmon traveling from one habitat to other. This migration of germ cells is indispensible for the development of new generations. It is not, however, clear why germ cells differentiate during migration but not at the place of origin. In order to escape harmful somatic signals which might disturb the proper establishment of germ cells forced germ cell migration may be necessary. Another reason may be to benefit from the opportunities of new habitats. Therefore, emigration may have powerful effects on the population dynamics of the immigrant germ cells. While some of these cells do reach their target, some others die or reach to wrong targets. Only germ cell precursors with genetically, and structurally powerful can reach their target. Likewise, epigenetic reprogramming in both migratory and post-migratory germ cells is essential for the establishment of totipotency. During this journey some germ cells may sacrifice themselves for the goodness of the others. The number and quality of germ cells reaching the genital ridge may vary depending on the problems encountered during migration. If the aim in germ cell specification is to provide an optimal ovarian reserve for the continuity of the generation, then this cascade of events cannot be only accomplished at the same level for every one but also are manifested by several outcomes. This is significant evidence supporting the possibility of unique individual ovarian reserve.

Efficacy of wheat germ oil in modulating radiation-induced heart damage in rats

International Nuclear Information System (INIS)

Said, U.Z.; Azab, Kh.Sh.

2006-01-01

Wheat Germ oil is a natural unrefined vegetable oil. It is an excellent source of vitamin E, octacosanol, linoleic and linolenic essential fatty acids, which may be beneficial in neutralizing the free oxygen radicals. This study was designed to investigate the cardio-protective efficacy of wheat germ oil, on radiation-induced oxidative damage in rat's heart. Wheat germ oil was supplemented by gavage to rats at a dose of 81 mg/ kg body wt for 10 successive days pre- and 7 successive days post-exposure to 7 Gy (single dose) of whole body gamma irradiation. The dose of wheat germ oil is equivalent to daily human nutritional supplementation quantity. The results revealed that whole body ?-irradiation of rats produced significant alterations in blood cells picture. The erythrocyte, leucocyte, platelet counts and hemoglobin levels decreased after irradiation. Also, radiation-induced biochemical disorders manifested by significant elevation in xanthine oxidase activity (XO) and thiobarbituric acid reactive substances (TBARS) level, with decrease in reduced glutathione (GSH) content in heart tissues, indicating depression in the antioxidant status. Serum lipid profile as total cholesterol, high density lipoprotein-cholesterol (HDL-C), low density lipoprotein-cholesterol (LDL-C) and triglycerides levels (TG) were significantly higher than normal control rats. Radiation exposure produced a significant rise in the activities of serum markers for heart damage as creatine phosphokinase (CPK), aspartate aminotransferase (AST) and lactic dehydrogenase (LDH) indicating acute cardiac toxicity. Moreover, the obtained results revealed abnormal electrophoretic pattern of LDH isoenzymes in the 7th day after exposure to gamma rays. Three bands only appear on the agarose film comparing with 4 bands in normal control rats. The rats that received wheat germ oil supplement showed significantly less severe damage and remarkable improvement in all of the measured parameters when compared to

LiDAR error estimation with WAsP engineering

DEFF Research Database (Denmark)

Bingöl, Ferhat; Mann, Jakob; Foussekis, D.

2008-01-01

The LiDAR measurements, vertical wind profile in any height between 10 to 150m, are based on assumption that the measured wind is a product of a homogenous wind. In reality there are many factors affecting the wind on each measurement point which the terrain plays the main role. To model Li......DAR measurements and predict possible error in different wind directions for a certain terrain we have analyzed two experiment data sets from Greece. In both sites LiDAR and met. mast data have been collected and the same conditions are simulated with Riso/DTU software, WAsP Engineering 2.0. Finally measurement...

From Young Children's Ideas about Germs to Ideas Shaping a Learning Environment

Science.gov (United States)

Ergazaki, Marida; Saltapida, Konstantina; Zogza, Vassiliki

2010-11-01

This paper is concerned with highlighting young children’s ideas about the nature, location and appearance of germs, as well as their reasoning strands about germs’ ontological category and biological functions. Moreover, it is concerned with exploring how all these could be taken into account for shaping a potentially fruitful learning environment. Conducting individual, semi-structured interviews with 35 preschoolers (age 4.5-5.5) of public kindergartens in the broader area of Patras, we attempted to trace their ideas about what germs are, where they may be found, whether they are good or bad and living or non-living and how they might look like in a drawing. Moreover, children were required to attribute a series of biological functions to dogs, chairs and germs, and finally to create a story with germs holding a key-role. The analysis of our qualitative data within the “NVivo” software showed that the informants make a strong association of germs with health and hygiene issues, locate germs mostly in our body and the external environment, are not familiar with the ‘good germs’-idea, and draw germs as ‘human-like’, ‘animal-like’ or ‘abstract’ entities. Moreover, they have significant difficulties not only in employing biological functions as criteria for classifying germs in the category of ‘living’, but also in just attributing such functions to germs using a warrant. Finally, the shift from our findings to a 3-part learning environment aiming at supporting preschoolers in refining their initial conceptualization of germs is thoroughly discussed in the paper.

THE MODERN THEORY AND TECHNOLOGY OF PRODUCTION, PROCESSING AND USE OF THE PRODUCTS OF COMPLEX PROCESSING OF WHEAT GERM

Directory of Open Access Journals (Sweden)

N. S. Rodionova

2014-01-01

Full Text Available Summary. The data and methods for the preparation of deep processing of wheat germ and their impact on the physical and chemical properties of the final products. It was found that for use in food technology is preferable to use a method is-cold-pressed wheat germ, under which the processed products do not present a residual amount of solvents and other non-food components. Given food and biological characteristics of wheat germ and products deep processing, it was found that they contain vitamin E, A, D, vitamin group В, more than 20 macro- and microelements. Methods of extracting oil from different types raw materials. Analyzed the functional role of ω-6 and ω -3 fatty acids for the human body and ways to maintain balance. A review of plant oils, the prospects of its use to create food systems balanced composition of fatty acids. It was found that the ratio of ω-6 and ω -3 fatty acids in wheat germ oil does not meet the recommended therefore to establish the necessary balance it is preferable to mix amaranth oil and pumpkin. Classified the factors affecting the quality parameters of wheat germ stored, evaluated the role of the enzyme complex during storage of wheat germ and their products deep processing. It was found that a significant effect on the damage of wheat germ has a dual action of lipase, lipoxygenase and catalase. Given the storage and stabilization of wheat germ, shows the potential use of stabilizers to increase the shelf life of wheat germ. As stabilizers, preference is given to compositions of organic acids: ascorbic, succinic and fumaric. It is proved that the composition of organic acids suppress the activity of lipase and lipoxygenase catalase by wheatgerm type noncompetitive inhibition. A review of the technologies used wheat germ and products of their complex processing in medical, cosmetic, feed and food industry. Evaluated the potential application of wheat germ and products deep processing industry of functional

LiDAR data for the Delta Area of California

Data.gov (United States)

California Natural Resource Agency — LiDAR data for the Delta Area of California from the California Department of Water Resources. Bare earth grids from LiDAR.This data is in ESRI Grid format with 2...

2003 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Snohomish County, Washington

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — TerraPoint surveyed and created this data for the Puget Sound LiDAR Consortium under contract. The area surveyed is approximately 167 square miles and covers a...

Fusion of Airborne Discrete-Return LiDAR and Hyperspectral Data for Land Cover Classification

Directory of Open Access Journals (Sweden)

Shezhou Luo

2015-12-01

Full Text Available Accurate land cover classification information is a critical variable for many applications. This study presents a method to classify land cover using the fusion data of airborne discrete return LiDAR (Light Detection and Ranging and CASI (Compact Airborne Spectrographic Imager hyperspectral data. Four LiDAR-derived images (DTM, DSM, nDSM, and intensity and CASI data (48 bands with 1 m spatial resolution were spatially resampled to 2, 4, 8, 10, 20 and 30 m resolutions using the nearest neighbor resampling method. These data were thereafter fused using the layer stacking and principal components analysis (PCA methods. Land cover was classified by commonly used supervised classifications in remote sensing images, i.e., the support vector machine (SVM and maximum likelihood (MLC classifiers. Each classifier was applied to four types of datasets (at seven different spatial resolutions: (1 the layer stacking fusion data; (2 the PCA fusion data; (3 the LiDAR data alone; and (4 the CASI data alone. In this study, the land cover category was classified into seven classes, i.e., buildings, road, water bodies, forests, grassland, cropland and barren land. A total of 56 classification results were produced, and the classification accuracies were assessed and compared. The results show that the classification accuracies produced from two fused datasets were higher than that of the single LiDAR and CASI data at all seven spatial resolutions. Moreover, we find that the layer stacking method produced higher overall classification accuracies than the PCA fusion method using both the SVM and MLC classifiers. The highest classification accuracy obtained (OA = 97.8%, kappa = 0.964 using the SVM classifier on the layer stacking fusion data at 1 m spatial resolution. Compared with the best classification results of the CASI and LiDAR data alone, the overall classification accuracies improved by 9.1% and 19.6%, respectively. Our findings also demonstrated that the

European consensus on diagnosis and treatment of germ cell cancer: a report of the European Germ Cell Cancer Consensus Group (EGCCCG)

NARCIS (Netherlands)

Schmoll, H. J.; Souchon, R.; Krege, S.; Albers, P.; Beyer, J.; Kollmannsberger, C.; Fossa, S. D.; Skakkebaek, N. E.; de Wit, R.; Fizazi, K.; Droz, J. P.; Pizzocaro, G.; Daugaard, G.; de Mulder, P. H. M.; Horwich, A.; Oliver, T.; Huddart, R.; Rosti, G.; Paz Ares, L.; Pont, O.; Hartmann, J. T.; Aass, N.; Algaba, F.; Bamberg, M.; Bodrogi, I.; Bokemeyer, C.; Classen, J.; Clemm, S.; Culine, S.; de Wit, M.; Derigs, H. G.; Dieckmann, K. P.; Flasshove, M.; Garcia del Muro, X.; Gerl, A.; Germa-Lluch, J. R.; Hartmann, M.; Heidenreich, A.; Hoeltl, W.; Joffe, J.; Jones, W.; Kaiser, G.; Klepp, O.; Kliesch, S.; Kisbenedek, L.; Koehrmann, K. U.; Kuczyk, M.; Laguna, M. P.; Leiva, O.; Loy, V.; Mason, M. D.; Mead, G. M.; Mueller, R. P.; Nicolai, N.; Oosterhof, G. O. N.; Pottek, T.; Rick, O.; Schmidberger, H.; Sedlmayer, F.; Siegert, W.; Studer, U.; Tjulandin, S.; von der Maase, H.; Walz, P.; Weinknecht, S.; Weissbach, L.; Winter, E.; Wittekind, C.

2004-01-01

Germ cell tumour is the most frequent malignant tumour type in young men with a 100% rise in the incidence every 20 years. Despite this, the high sensitivity of germ cell tumours to platinum-based chemotherapy, together with radiation and surgical measures, leads to the high cure rate of > or = 99%

Localization of early germ cells in a stony coral, Euphyllia ancora: potential implications for a germline stem cell system in coral gametogenesis

Science.gov (United States)

Shikina, Shinya; Chung, Yi-Jou; Wang, Hsiang-Ming; Chiu, Yi-Ling; Shao, Zih-Fang; Lee, Yan-Horn; Chang, Ching-Fong

2015-06-01

Most corals exhibit annual or multiple gametogenic cycles. Thus far, coral gametogenesis has been studied in many species and locations during the past three decades; however, currently, only a few papers exist that describe the origin of germ cells, such as germline stem cells (GSCs), which support the continuous production of gametes in every reproductive cycle. To address this issue, in this study, we focused on and identified piwi gene, which has been used as a marker of germline cells, including GSCs, in various metazoans, in a scleractinian coral, Euphyllia ancora. Reverse-transcription PCR and Western blotting analyses revealed that E. ancora piwi-like ( Eapiwi) is expressed in mesentery tissues where the sites of gametogenesis are located for both sexes. Immunohistochemistry with a specific antibody against Eapiwi revealed strong immunoreactivity in the spermatogonia in males and in the oogonia and early oocytes in females, demonstrating that Eapiwi could be used as an early germ cell marker in E. ancora. Subsequent immunohistochemical analyses regarding the spatial and temporal distribution patterns of early germ cells in mesentery tissues revealed that early germ cells were present throughout the year in the mesentery tissue we examined, regardless of the sexual reproductive cycle. In particular, small numbers of early germ cells were observed in specific sites of mesentery tissues with fully matured gonads in both sexes. These early germ cells were not released together with mature gametes during the spawning period and remained in the mesentery tissues. These results suggested that these early germ cells most likely serve as a reservoir of germline cells and that some of these cells would produce differentiated germ cells for the upcoming sexual reproduction period; hence, these cells would function as GSCs. Our data provide new information for understanding continuous gamete production in corals.

Tooth-germ damage by ionizing radiation

International Nuclear Information System (INIS)

Sobkowiak, E.M.; Beetke, E.; Bienengraeber, V.; Held, M.; Kittner, K.H.

1977-01-01

Experiments on animals (four-week-old dogs) were conducted in an investigation made to study the possibility of dose-dependent tooth-germ damage produced by ionizing radiation. The individual doses were 50 R and 200 R, respectively, and they were administered once to three times at weekly intervals. Hyperemia and edemata could be observed on tooth-germ pulps from 150 R onward. Both of these conditions became more acute as the radiation dose increased (from 150 R to 600 R). Possible damage to both the dentin and enamel is pointed out. (author)

Nuclear Reprogramming in Mouse Primordial Germ Cells: Epigenetic Contribution

Directory of Open Access Journals (Sweden)

Massimo De Felici

2011-01-01

Full Text Available The unique capability of germ cells to give rise to a new organism, allowing the transmission of primary genetic information from generation to generation, depends on their epigenetic reprogramming ability and underlying genomic totipotency. Recent studies have shown that genome-wide epigenetic modifications, referred to as “epigenetic reprogramming”, occur during the development of the gamete precursors termed primordial germ cells (PGCs in the embryo. This reprogramming is likely to be critical for the germ line development itself and necessary to erase the parental imprinting and setting the base for totipotency intrinsic to this cell lineage. The status of genome acquired during reprogramming and the associated expression of key pluripotency genes render PGCs susceptible to transform into pluripotent stem cells. This may occur in vivo under still undefined condition, and it is likely at the origin of the formation of germ cell tumors. The phenomenon appears to be reproduced under partly defined in vitro culture conditions, when PGCs are transformed into embryonic germ (EG cells. In the present paper, I will try to summarize the contribution that epigenetic modifications give to nuclear reprogramming in mouse PGCs.

Genomic Characterization of DArT Markers Based on High-Density Linkage Analysis and Physical Mapping to the Eucalyptus Genome

Science.gov (United States)

Petroli, César D.; Sansaloni, Carolina P.; Carling, Jason; Steane, Dorothy A.; Vaillancourt, René E.; Myburg, Alexander A.; da Silva, Orzenil Bonfim; Pappas, Georgios Joannis; Kilian, Andrzej; Grattapaglia, Dario

2012-01-01

Diversity Arrays Technology (DArT) provides a robust, high throughput, cost-effective method to query thousands of sequence polymorphisms in a single assay. Despite the extensive use of this genotyping platform for numerous plant species, little is known regarding the sequence attributes and genome-wide distribution of DArT markers. We investigated the genomic properties of the 7,680 DArT marker probes of a Eucalyptus array, by sequencing them, constructing a high density linkage map and carrying out detailed physical mapping analyses to the Eucalyptus grandis reference genome. A consensus linkage map with 2,274 DArT markers anchored to 210 microsatellites and a framework map, with improved support for ordering, displayed extensive collinearity with the genome sequence. Only 1.4 Mbp of the 75 Mbp of still unplaced scaffold sequence was captured by 45 linkage mapped but physically unaligned markers to the 11 main Eucalyptus pseudochromosomes, providing compelling evidence for the quality and completeness of the current Eucalyptus genome assembly. A highly significant correspondence was found between the locations of DArT markers and predicted gene models, while most of the 89 DArT probes unaligned to the genome correspond to sequences likely absent in E. grandis, consistent with the pan-genomic feature of this multi-Eucalyptus species DArT array. These comprehensive linkage-to-physical mapping analyses provide novel data regarding the genomic attributes of DArT markers in plant genomes in general and for Eucalyptus in particular. DArT markers preferentially target the gene space and display a largely homogeneous distribution across the genome, thereby providing superb coverage for mapping and genome-wide applications in breeding and diversity studies. Data reported on these ubiquitous properties of DArT markers will be particularly valuable to researchers working on less-studied crop species who already count on DArT genotyping arrays but for which no reference

Genomic characterization of DArT markers based on high-density linkage analysis and physical mapping to the Eucalyptus genome.

Directory of Open Access Journals (Sweden)

César D Petroli

Full Text Available Diversity Arrays Technology (DArT provides a robust, high throughput, cost-effective method to query thousands of sequence polymorphisms in a single assay. Despite the extensive use of this genotyping platform for numerous plant species, little is known regarding the sequence attributes and genome-wide distribution of DArT markers. We investigated the genomic properties of the 7,680 DArT marker probes of a Eucalyptus array, by sequencing them, constructing a high density linkage map and carrying out detailed physical mapping analyses to the Eucalyptus grandis reference genome. A consensus linkage map with 2,274 DArT markers anchored to 210 microsatellites and a framework map, with improved support for ordering, displayed extensive collinearity with the genome sequence. Only 1.4 Mbp of the 75 Mbp of still unplaced scaffold sequence was captured by 45 linkage mapped but physically unaligned markers to the 11 main Eucalyptus pseudochromosomes, providing compelling evidence for the quality and completeness of the current Eucalyptus genome assembly. A highly significant correspondence was found between the locations of DArT markers and predicted gene models, while most of the 89 DArT probes unaligned to the genome correspond to sequences likely absent in E. grandis, consistent with the pan-genomic feature of this multi-Eucalyptus species DArT array. These comprehensive linkage-to-physical mapping analyses provide novel data regarding the genomic attributes of DArT markers in plant genomes in general and for Eucalyptus in particular. DArT markers preferentially target the gene space and display a largely homogeneous distribution across the genome, thereby providing superb coverage for mapping and genome-wide applications in breeding and diversity studies. Data reported on these ubiquitous properties of DArT markers will be particularly valuable to researchers working on less-studied crop species who already count on DArT genotyping arrays but for

2000 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Kitsap Peninsula, Washington

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — TerraPoint surveyed and created this data for the Puget Sound LiDAR Consortium under contract. The area surveyed is approximately 1,146 square miles and covers part...

2003 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Lewis County, Washington

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — TerraPoint surveyed and created this data for the Puget Sound LiDAR Consortium under contract. The area surveyed is approximately 100 square miles and covers part of...

Evidence against a germ plasm in the milkweed bug Oncopeltus fasciatus, a hemimetabolous insect

Directory of Open Access Journals (Sweden)

Ben Ewen-Campen

2013-04-01

Primordial germ cell (PGC formation in holometabolous insects like Drosophila melanogaster relies on maternally synthesised germ cell determinants that are asymmetrically localised to the oocyte posterior cortex. Embryonic nuclei that inherit this “germ plasm” acquire PGC fate. In contrast, historical studies of basally branching insects (Hemimetabola suggest that a maternal requirement for germ line genes in PGC specification may be a derived character confined principally to Holometabola. However, there have been remarkably few investigations of germ line gene expression and function in hemimetabolous insects. Here we characterise PGC formation in the milkweed bug Oncopeltus fasciatus, a member of the sister group to Holometabola, thus providing an important evolutionary comparison to members of this clade. We examine the transcript distribution of orthologues of 19 Drosophila germ cell and/or germ plasm marker genes, and show that none of them localise asymmetrically within Oncopeltus oocytes or early embryos. Using multiple molecular and cytological criteria, we provide evidence that PGCs form after cellularisation at the site of gastrulation. Functional studies of vasa and tudor reveal that these genes are not required for germ cell formation, but that vasa is required in adult males for spermatogenesis. Taken together, our results provide evidence that Oncopeltus germ cells may form in the absence of germ plasm, consistent with the hypothesis that germ plasm is a derived strategy of germ cell specification in insects.

Evidence against a germ plasm in the milkweed bug Oncopeltus fasciatus, a hemimetabolous insect.

Science.gov (United States)

Ewen-Campen, Ben; Jones, Tamsin E M; Extavour, Cassandra G

2013-06-15

Primordial germ cell (PGC) formation in holometabolous insects like Drosophila melanogaster relies on maternally synthesised germ cell determinants that are asymmetrically localised to the oocyte posterior cortex. Embryonic nuclei that inherit this "germ plasm" acquire PGC fate. In contrast, historical studies of basally branching insects (Hemimetabola) suggest that a maternal requirement for germ line genes in PGC specification may be a derived character confined principally to Holometabola. However, there have been remarkably few investigations of germ line gene expression and function in hemimetabolous insects. Here we characterise PGC formation in the milkweed bug Oncopeltus fasciatus, a member of the sister group to Holometabola, thus providing an important evolutionary comparison to members of this clade. We examine the transcript distribution of orthologues of 19 Drosophila germ cell and/or germ plasm marker genes, and show that none of them localise asymmetrically within Oncopeltus oocytes or early embryos. Using multiple molecular and cytological criteria, we provide evidence that PGCs form after cellularisation at the site of gastrulation. Functional studies of vasa and tudor reveal that these genes are not required for germ cell formation, but that vasa is required in adult males for spermatogenesis. Taken together, our results provide evidence that Oncopeltus germ cells may form in the absence of germ plasm, consistent with the hypothesis that germ plasm is a derived strategy of germ cell specification in insects.

Flood Modeling Using a Synthesis of Multi-Platform LiDAR Data

Directory of Open Access Journals (Sweden)

Ryan M. Csontos

2013-09-01

Full Text Available This study examined the utility of a high resolution ground-based (mobile and terrestrial Light Detection and Ranging (LiDAR dataset (0.2 m point-spacing supplemented with a coarser resolution airborne LiDAR dataset (5 m point-spacing for use in a flood inundation analysis. The techniques for combining multi-platform LiDAR data into a composite dataset in the form of a triangulated irregular network (TIN are described, and quantitative comparisons were made to a TIN generated solely from the airborne LiDAR dataset. For example, a maximum land surface elevation difference of 1.677 m and a mean difference of 0.178 m were calculated between the datasets based on sample points. Utilizing the composite and airborne LiDAR-derived TINs, a flood inundation comparison was completed using a one-dimensional steady flow hydraulic modeling analysis. Quantitative comparisons of the water surface profiles and depth grids indicated an underestimation of flooding extent, volume, and maximum flood height using the airborne LiDAR data alone. A 35% increase in maximum flood height was observed using the composite LiDAR dataset. In addition, the extents of the water surface profiles generated from the two datasets were found to be statistically significantly different. The urban and mountainous characteristics of the study area as well as the density (file size of the high resolution ground based LiDAR data presented both opportunities and challenges for flood modeling analyses.

Can serums be replaced by Mueller‑Hinton agar in germ tube test ...

African Journals Online (AJOL)

Background: The germ tube test (GTT) is inexpensive, easy, and well‑defined test that differentiates Candida albicans (excluding Candida dubliniensis and Candida africana) from other species. The aim of this study was to evaluate various serums (i.e., human, rabbit, horse, and fetal bovine serum) used in the GTT and ...

N-acetylcysteine protects against cadmium-induced germ cell apoptosis by inhibiting endoplasmic reticulum stress in testes.

Science.gov (United States)

Ji, Yan-Li; Wang, Hua; Zhang, Cheng; Zhang, Ying; Zhao, Mei; Chen, Yuan-Hua; Xu, De-Xiang

2013-03-01

Cadmium (Cd) is a reproductive toxicant that induces germ cell apoptosis in the testes. Previous studies have demonstrated that endoplasmic reticulum (ER) stress is involved in Cd-induced germ cell apoptosis. The aim of the present study was to investigate the effects of N-acetylcysteine (NAC), an antioxidant, on Cd-induced ER stress and germ cell apoptosis in the testes. Male CD-1 mice were intraperitoneally injected with CdCl2 (2.0 mg kg(-1)). As expected, acute Cd exposure induced germ cell apoptosis in the testes, as determined by terminal dUTP nick-end labelling (TUNEL). However, the administration of NAC alleviated Cd-induced germ cell apoptosis in the testes. Further analysis showed that NAC attenuated the Cd-induced upregulation of testicular glucose-regulated protein 78 (GRP78), an important ER molecular chaperone. Moreover, NAC inhibited the Cd-induced phosphorylation of testicular eukaryotic translation initiation factor 2α (eIF2α), a downstream target of the double-stranded RNA-activated kinase-like ER kinase (PERK) pathway. In addition, NAC blocked the Cd-induced activation of testicular X binding protein (XBP)-1, indicating that NAC attenuates the Cd-induced ER stress and the unfolded protein response (UPR). Interestingly, NAC almost completely prevented the Cd-induced elevation of C/EBP homologous protein (CHOP) and phosphorylation of c-Jun N-terminal kinase (JNK), two components of the ER stress-mediated apoptotic pathway. In conclusion, NAC protects against Cd-induced germ cell apoptosis by inhibiting endoplasmic reticulum stress in the testes.

Sex-specific differences in fetal germ cell apoptosis induced by ionizing radiation

International Nuclear Information System (INIS)

Guerquin, M.J.; Duquenne, C.; Coffigny, H.; Rouiller-Fabre, V.; Lambrot, R.; Habert, R.; Livera, G.; Guerquin, M.J.; Duquenne, C.; Coffigny, H.; Rouiller-Fabre, V.; Lambrot, R.; Habert, R.; Livera, G.; Guerquin, M.J.; Duquenne, C.; Coffigny, H.; Rouiller-Fabre, V.; Lambrot, R.; Habert, R.; Livera, G.; Bakalska, M.; Frydman, R.; Frydman, R.; Frydman, R.

2009-01-01

Background: We have previously shown that male human fetal germ cells are highly radiosensitive and that their death depends on p53 activation. Male germ cell apoptosis was initiated with doses as low as 0.1 Gy and was prevented by pifithrin α, a p53 inhibitor. In this study, we investigated the radiosensitivity of early female and male fetal proliferating germ cells. Methods and results: Both male and female fetal germ cells displayed a similar number of γH2AX foci in response to ionizing radiation (IR). In organ culture of human fetal ovaries, the germ cells underwent apoptosis only when exposed to high doses of IR (1.5 Gy and above). Accumulation of p53 was detected in irradiated male human fetal germ cells but not in female ones. Inhibition of p53 with pifithrin α did not affect oogonia apoptosis following irradiation. IR induced apoptosis similarly in mouse fetal ovaries in organ culture and in vivo during oogonial proliferation. Germ cell survival in testes from p53 knockout or p63 knockout mice exposed to IR was better than wild-type, whereas female germ cell survival was unaffected by p53 or p63 knockout. Conclusions: These findings show that pre-meiotic male and female fetal germ cells behave differently in response to a genotoxic stress-irradiation with oogonia being less sensitive and undergoing p53-independent apoptosis. (authors)

Sex-specific differences in fetal germ cell apoptosis induced by ionizing radiation

Energy Technology Data Exchange (ETDEWEB)

Guerquin, M.J.; Duquenne, C.; Coffigny, H.; Rouiller-Fabre, V.; Lambrot, R.; Habert, R.; Livera, G. [CEA, DSV/DRR/SEGG/LDRG, Laboratory of Differentiation and Radiobiology of the Gonads, Unit of Gametogenesis and Genotoxicity, F-92265 Fontenay aux Roses (France); Guerquin, M.J.; Duquenne, C.; Coffigny, H.; Rouiller-Fabre, V.; Lambrot, R.; Habert, R.; Livera, G. [Univ. Paris 7-Denis Diderot, UFR of Biology, UMR-S 566, F-92265 Fontenay aux Roses (France); Guerquin, M.J.; Duquenne, C.; Coffigny, H.; Rouiller-Fabre, V.; Lambrot, R.; Habert, R.; Livera, G. [INSERM, U566, F-92265 Fontenay aux Roses (France); Bakalska, M. [Institute of Experimental Morphology and Anthropology, Bulgarian Academy of Sciences, Sofia (Bulgaria); Frydman, R. [Univ Paris-Sud, Clamart F-92140 (France); Frydman, R. [AP-HP, Service de Gynecologie-Obstetrique et Medecine de la Reproduction, Hopital Antoine Beclere, Clamart F-92141 (France); Frydman, R. [INSERM, U782, Clamart F-92140 (France)

2009-07-01

Background: We have previously shown that male human fetal germ cells are highly radiosensitive and that their death depends on p53 activation. Male germ cell apoptosis was initiated with doses as low as 0.1 Gy and was prevented by pifithrin {alpha}, a p53 inhibitor. In this study, we investigated the radiosensitivity of early female and male fetal proliferating germ cells. Methods and results: Both male and female fetal germ cells displayed a similar number of {gamma}H2AX foci in response to ionizing radiation (IR). In organ culture of human fetal ovaries, the germ cells underwent apoptosis only when exposed to high doses of IR (1.5 Gy and above). Accumulation of p53 was detected in irradiated male human fetal germ cells but not in female ones. Inhibition of p53 with pifithrin {alpha} did not affect oogonia apoptosis following irradiation. IR induced apoptosis similarly in mouse fetal ovaries in organ culture and in vivo during oogonial proliferation. Germ cell survival in testes from p53 knockout or p63 knockout mice exposed to IR was better than wild-type, whereas female germ cell survival was unaffected by p53 or p63 knockout. Conclusions: These findings show that pre-meiotic male and female fetal germ cells behave differently in response to a genotoxic stress-irradiation with oogonia being less sensitive and undergoing p53-independent apoptosis. (authors)

Primary pleuro-pulmonary malignant germ cell tumours.

Directory of Open Access Journals (Sweden)

Vaideeswar P

2002-01-01

Full Text Available Lungs and pleura are rare sites for malignant germ-cell tumours. Two cases, pure yolk-sac tumour and yolk sac-sac tumour/embryonal carcinoma are described in young males who presented with rapid progression of respiratory symptoms. The malignant mixed germ cell tumour occurred in the right lung, while the yolk-sac tumour had a pseudomesotheliomatous growth pattern suggesting a pleural origin. Alpha-foetoprotein was immunohistochemically demonstrated in both.

Generation of organized germ layers from a single mouse embryonic stem cell.

Science.gov (United States)

Poh, Yeh-Chuin; Chen, Junwei; Hong, Ying; Yi, Haiying; Zhang, Shuang; Chen, Junjian; Wu, Douglas C; Wang, Lili; Jia, Qiong; Singh, Rishi; Yao, Wenting; Tan, Youhua; Tajik, Arash; Tanaka, Tetsuya S; Wang, Ning

2014-05-30

Mammalian inner cell mass cells undergo lineage-specific differentiation into germ layers of endoderm, mesoderm and ectoderm during gastrulation. It has been a long-standing challenge in developmental biology to replicate these organized germ layer patterns in culture. Here we present a method of generating organized germ layers from a single mouse embryonic stem cell cultured in a soft fibrin matrix. Spatial organization of germ layers is regulated by cortical tension of the colony, matrix dimensionality and softness, and cell-cell adhesion. Remarkably, anchorage of the embryoid colony from the 3D matrix to collagen-1-coated 2D substrates of ~1 kPa results in self-organization of all three germ layers: ectoderm on the outside layer, mesoderm in the middle and endoderm at the centre of the colony, reminiscent of generalized gastrulating chordate embryos. These results suggest that mechanical forces via cell-matrix and cell-cell interactions are crucial in spatial organization of germ layers during mammalian gastrulation. This new in vitro method could be used to gain insights on the mechanisms responsible for the regulation of germ layer formation.

Germ Cell Proteins in Melanoma: Prognosis, Diagnosis, Treatment, and Theories on Expression

International Nuclear Information System (INIS)

Rosa, A. M.; Dabas, N.; Byrnes, D. M.; Eller, M. S.; Grichnik, J. M.; Grichnik, J M.; Grichnik, J M.

2012-01-01

Germ cell protein expression in melanoma has been shown to correlate with malignancy, severity of disease and to serve as an immunologic target for therapy. However, very little is known about the role that germ cell proteins play in cancer development. Unique germ cell pathways include those involved in immortalization, genetic evolution, and energy metabolism. There is an ever increasing recognition that within tumors there is a subpopulation of cells with stem-cell-like characteristics that play a role in driving tumor genesis. Stem cell and germ cell biology is intertwined. Given the enormous potential and known expression of germ cell proteins in melanoma, it is possible that they represent a largely untapped resource that may play a fundamental role in tumor development and progression. The purpose of this paper is to provide an update on the current value of germ cell protein expression in melanoma diagnosis, prognosis, and therapy, as well as to review critical germ cell pathways and discuss the potential roles these pathways may play in malignant transformation

Wayne and Washtenaw Counties 1.0 PPSM LiDAR

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — TASK NAME: Wayne and Washtenaw Counties 1.0 PPSM LiDAR LiDAR Data Acquisition and Processing Production Task USGS CONTRACT: 07CRCN0006 TASK ORDER NUMBER: G09PD00300...

Object-oriented identification of forested landslides with derivatives of single pulse LiDAR data

Science.gov (United States)

Van Den Eeckhaut, Miet; Kerle, Norman; Poesen, Jean; Hervás, Javier

2012-11-01

In contrast to the many studies that use expert-based analysis of LiDAR derivatives for landslide mapping in forested terrain, only few studies have attempted to develop (semi-)automatic methods for extracting landslides from LiDAR derivatives. While all these studies are pixel-based, it has not yet been tested whether object-oriented analysis (OOA) could be an alternative. This study investigates the potential of OOA using only single-pulse LiDAR derivatives, such as slope gradient, roughness and curvature to map landslides. More specifically, the focus is on both LiDAR data segmentation and classification of slow-moving landslides in densely vegetated areas, where spectral data do not allow accurate landslide identification. A multistage procedure has been developed and tested in the Flemish Ardennes (Belgium). The procedure consists of (1) image binarization and multiresolution segmentation, (2) classification of landslide parts (main scarps and landslide body segments) and non-landslide features (i.e. earth banks and cropland fields) with supervised support vector machines at the appropriate scale, (3) delineation of landslide flanks, (4) growing of a landslide body starting from its main scarp, and (5) final cleaning of the inventory map. The results obtained show that OOA using LiDAR derivatives allows recognition and characterization of profound morphologic properties of forested deep-seated landslides on soil-covered hillslopes, because more than 90% of the main scarps and 70% of the landslide bodies of an expert-based inventory were accurately identified with OOA. For mountainous areas with bedrock, on the other hand, creation of a transferable model is expected to be more difficult.

2005 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: North Puget Sound Lowlands

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Terrapoint collected Light Detection and Ranging (LiDAR) data contributing to the Puget Sound Lowlands project of 2005. Arlington, City of Snohomish, Snohomish...

Bridging gaps: On the performance of airborne LiDAR to model wood mouse-habitat structure relationships in pine forests.

Science.gov (United States)

Jaime-González, Carlos; Acebes, Pablo; Mateos, Ana; Mezquida, Eduardo T

2017-01-01

LiDAR technology has firmly contributed to strengthen the knowledge of habitat structure-wildlife relationships, though there is an evident bias towards flying vertebrates. To bridge this gap, we investigated and compared the performance of LiDAR and field data to model habitat preferences of wood mouse (Apodemus sylvaticus) in a Mediterranean high mountain pine forest (Pinus sylvestris). We recorded nine field and 13 LiDAR variables that were summarized by means of Principal Component Analyses (PCA). We then analyzed wood mouse's habitat preferences using three different models based on: (i) field PCs predictors, (ii) LiDAR PCs predictors; and (iii) both set of predictors in a combined model, including a variance partitioning analysis. Elevation was also included as a predictor in the three models. Our results indicate that LiDAR derived variables were better predictors than field-based variables. The model combining both data sets slightly improved the predictive power of the model. Field derived variables indicated that wood mouse was positively influenced by the gradient of increasing shrub cover and negatively affected by elevation. Regarding LiDAR data, two LiDAR PCs, i.e. gradients in canopy openness and complexity in forest vertical structure positively influenced wood mouse, although elevation interacted negatively with the complexity in vertical structure, indicating wood mouse's preferences for plots with lower elevations but with complex forest vertical structure. The combined model was similar to the LiDAR-based model and included the gradient of shrub cover measured in the field. Variance partitioning showed that LiDAR-based variables, together with elevation, were the most important predictors and that part of the variation explained by shrub cover was shared. LiDAR derived variables were good surrogates of environmental characteristics explaining habitat preferences by the wood mouse. Our LiDAR metrics represented structural features of the forest

Multi-component wind measurements of wind turbine wakes performed with three LiDARs

Science.gov (United States)

Iungo, G. V.; Wu, Y.-T.; Porté-Agel, F.

2012-04-01

Field measurements of the wake flow produced from the interaction between atmospheric boundary layer and a wind turbine are performed with three wind LiDARs. The tested wind turbine is a 2 MW Enercon E-70 located in Collonges, Switzerland. First, accuracy of mean values and frequency resolution of the wind measurements are surveyed as a function of the number of laser rays emitted for each measurement. Indeed, measurements performed with one single ray allow maximizing sampling frequency, thus characterizing wake turbulence. On the other hand, if the number of emitted rays is increased accuracy of mean wind is increased due to the longer sampling period. Subsequently, two-dimensional measurements with a single LiDAR are carried out over vertical sections of the wind turbine wake and mean wake flow is obtained by averaging 2D measurements consecutively performed. The high spatial resolution of the used LiDAR allows characterizing in details velocity defect present in the central part of the wake and its downstream recovery. Single LiDAR measurements are also performed by staring the laser beam at fixed directions for a sampling period of about ten minutes and maximizing the sampling frequency in order to characterize wake turbulence. From these tests wind fluctuation peaks are detected in the wind turbine wake at blade top-tip height for different downstream locations. The magnitude of these turbulence peaks is generally reduced by moving downstream. This increased turbulence level at blade top-tip height observed for a real wind turbine has been already detected from previous wind tunnel tests and Large Eddy simulations, thus confirming the presence of a source of dangerous fatigue loads for following wind turbines within a wind farm. Furthermore, the proper characterization of wind fluctuations through LiDAR measurements is proved by the detection of the inertial subrange from spectral analysis of these velocity signals. Finally, simultaneous measurements with two

Lipid phosphate phosphatase activity regulates dispersal and bilateral sorting of embryonic germ cells in Drosophila

Science.gov (United States)

Renault, Andrew D.; Kunwar, Prabhat S.; Lehmann, Ruth

2010-01-01

In Drosophila, germ cell survival and directionality of migration are controlled by two lipid phosphate phosphatases (LPP), wunen (wun) and wunen-2 (wun2). wun wun2 double mutant analysis reveals that the two genes, hereafter collectively called wunens, act redundantly in primordial germ cells. We find that wunens mediate germ cell-germ cell repulsion and that this repulsion is necessary for germ cell dispersal and proper transepithelial migration at the onset of migration and for the equal sorting of the germ cells between the two embryonic gonads during their migration. We propose that this dispersal function optimizes adult fecundity by assuring maximal germ cell occupancy of both gonads. Furthermore, we find that the requirement for wunens in germ cell survival can be eliminated by blocking germ cell migration. We suggest that this essential function of Wunen is needed to maintain cell integrity in actively migrating germ cells. PMID:20431117

Human DAZL, DAZ and BOULE genes modulate primordial germ cell and haploid gamete formation

Science.gov (United States)

Kee, Kehkooi; Angeles, Vanessa T; Flores, Martha; Nguyen, Ha Nam; Pera, Renee A Reijo

2009-01-01

The leading cause of infertility in men and women is quantitative and qualitative defects in human germ cell (oocyte and sperm) development. Yet, it has not been possible to examine the unique developmental genetics of human germ cell formation and differentiation due to inaccessibility of germ cells during fetal development. Although several studies have shown that germ cells can be differentiated from mouse and human embryonic stem cells, human germ cells differentiated in these studies generally did not develop beyond the earliest stages1-8. Here we used a germ cell reporter to quantitate and isolate primordial germ cells derived from both male and female hESCs. Then, by silencing and overexpressing genes that encode germ cell-specific cytoplasmic RNA-binding proteins (not transcription factors), we modulated human germ cell formation and developmental progression. We observed that human DAZL (Deleted in AZoospermia-Like) functions in primordial germ cell formation, whereas closely-related genes, DAZ and BOULE, promote later stages of meiosis and development of haploid gametes. These results are significant to the generation of gametes for future basic science and potential clinical applications. PMID:19865085

Evaluating UAV and LiDAR Retrieval of Snow Depth in a Coniferous Forest in Arizona

Science.gov (United States)

Van Leeuwen, W. J. D.; Broxton, P.; Biederman, J. A.

2017-12-01

Remote sensing of snow depth and cover in forested environments is challenging. Trees interfere with the remote sensing of snowpack below the canopy and cause large variations in the spatial distribution of the snowpack itself (e.g. between below canopy environments to shaded gaps to open clearings). The distribution of trees and topographic variation make it challenging to monitor the snowpack with in-situ observations. Airborne LiDAR has improved our ability to monitor snowpack over large areas in montane and forested environments because of its high sampling rate and ability to penetrate the canopy. However, these LiDAR flights can be too expensive and time-consuming to process, making it hard to use them for real-time snow monitoring. In this research, we evaluate Structure from Motion (SfM) as an alternative to Airborne LiDAR to generate high-resolution snow depth data in forested environments. This past winter, we conducted a snow field campaign over Arizona's Mogollon Rim where we acquired aerial LiDAR, multi-angle aerial photography from a UAV, and extensive field observations of snow depth at two sites. LiDAR and SFM derived snow depth maps were generated by comparing "snow-on" and "snow-off" LiDAR and SfM data. The SfM- and LiDAR-generated snow depth maps were similar at a site with fewer trees, though there were more discrepancies at a site with more trees. Both compared reasonably well with the field observations at the sparser forested site, with poorer agreement at the denser forested site. Finally, although the SfM produced point clouds with much higher point densities than the aerial LiDAR, the SfM was not able to produce meaningful snow depth estimates directly underneath trees and had trouble in areas with deep shadows. Based on these findings, we are optimizing our UAV data acquisition strategies for this upcoming field season. We are using these data, along with high-resolution hydrological modeling, to gain a better understanding of how

Peculiarities in the CT findings of germ cell tumors in various tumor localizations

International Nuclear Information System (INIS)

Tazoe, Makoto; Miyagami, Mitsusuke; Tsubokawa, Takashi

1991-01-01

The CT findings of 17 germ cell tumors were studied in relation to the locations of the tumor, the pathological diagnoses, and the tumor markers (AFP and HCG). Generally, the CT findings of germ cell tumors depended on the pathological diagnoses more strongly than on the location of the tumors. On plain CT of 7 germ cell tumors in the pineal region, all of them demonstrated heterogeneous findings. Hydrocephalus was seen in 6 cases (86%) and calcification in 6 cases (86%) of the germ cell tumors in the pineal region. Calcification and hydrocephalus that appeared more often than in other regions were characteristic of germ cell tumors of the pineal region. The germ cell tumors in the basal ganglia had a slightly homogenous high density, with small cysts and calcification in most of them on plain CT. On enhanced CT, the tumors were moderately enhanced in all cases located in the basal ganglia. Four cases of germ cell tumors located in the basal ganglia revealed the dilatation of lateral ventricle due to hemispheric atrophy in the tumor side. The germ cell tumors showing an increase in the tumor markers such as AFP and HCG, which were usually malignant germ cell tumors, were strongly enhanced on enhanced CT. (author)

Numerical modeling of the airflow around a forest edge using LiDAR-derived forest heigths

DEFF Research Database (Denmark)

Boudreault, Louis-Etienne; Dellwik, Ebba; Bechmann, Andreas

A 3D methodology to quantify the effect of forests on the mean wind flow field is presented. The methodology is based on the treatment of forest raw data of light detection and ranging (LiDAR) scans, and a computational fluid dynamics (CFD) method based on a Reynolds-averaged Navier-Stokes (Ra......NS) approach using the k−e turbulence model with a corresponding canopy model. The example site investigated is a forest edge located on the Falster island in Denmark, where a measurement campaign was conducted. The LiDAR scans are used in order to obtain the forest heights, which served as input...

Relationship between LiDAR-derived forest canopy height and Landsat images

Science.gov (United States)

Cristina Pascual; Antonio Garcia-Abril; Warren B. Cohen; Susana. Martin-Fernandez

2010-01-01

The mean and standard deviation (SD) of light detection and ranging (LiDAR)-derived canopy height are related to forest structure. However, LiDAR data typically cover a limited area and have a high economic cost compared with satellite optical imagery. Optical images may be required to extrapolate LiDAR height measurements across a broad landscape. Different spectral...

Using Satellite and Airborne LiDAR to Model Woodpecker Habitat Occupancy at the Landscape Scale

Science.gov (United States)

Vierling, Lee A.; Vierling, Kerri T.; Adam, Patrick; Hudak, Andrew T.

2013-01-01

Incorporating vertical vegetation structure into models of animal distributions can improve understanding of the patterns and processes governing habitat selection. LiDAR can provide such structural information, but these data are typically collected via aircraft and thus are limited in spatial extent. Our objective was to explore the utility of satellite-based LiDAR data from the Geoscience Laser Altimeter System (GLAS) relative to airborne-based LiDAR to model the north Idaho breeding distribution of a forest-dependent ecosystem engineer, the Red-naped sapsucker (Sphyrapicus nuchalis). GLAS data occurred within ca. 64 m diameter ellipses spaced a minimum of 172 m apart, and all occupancy analyses were confined to this grain scale. Using a hierarchical approach, we modeled Red-naped sapsucker occupancy as a function of LiDAR metrics derived from both platforms. Occupancy models based on satellite data were weak, possibly because the data within the GLAS ellipse did not fully represent habitat characteristics important for this species. The most important structural variables influencing Red-naped Sapsucker breeding site selection based on airborne LiDAR data included foliage height diversity, the distance between major strata in the canopy vertical profile, and the vegetation density near the ground. These characteristics are consistent with the diversity of foraging activities exhibited by this species. To our knowledge, this study represents the first to examine the utility of satellite-based LiDAR to model animal distributions. The large area of each GLAS ellipse and the non-contiguous nature of GLAS data may pose significant challenges for wildlife distribution modeling; nevertheless these data can provide useful information on ecosystem vertical structure, particularly in areas of gentle terrain. Additional work is thus warranted to utilize LiDAR datasets collected from both airborne and past and future satellite platforms (e.g. GLAS, and the planned IceSAT2

A Study on Factors Affecting Airborne LiDAR Penetration

Directory of Open Access Journals (Sweden)

Wei-Chen Hsu

2015-01-01

Full Text Available This study uses data from different periods, areas and parameters of airborne LiDAR (light detection and ranging surveys to understand the factors that influence airborne LiDAR penetration rate. A discussion is presented on the relationships between these factors and LiDAR penetration rate. The results show that the flight height above ground level (AGL does not have any relationship with the penetration rate. There are some factors that should have larger influence. For example, the laser is affected by a wet ground surface by reducing the number of return echoes. The field of view (FOV has a slightly negative correlation with the penetration rate, which indicates that the laser incidence angle close to zero should achieve the best penetration. The vegetation cover rate also shows a negative correlation with the penetration rate, thus bare ground and reduced vegetation in the aftermath of a typhoon also cause high penetration rate. More return echoes could be extracted from the full-waveform system, thereby effectively improving the penetration rate. This study shows that full-waveform LiDAR is an effective method for increasing the number of surface reflected echoes. This study suggests avoiding LiDAR survey employment directly following precipitation to prevent laser echo reduction.

When does germ cell loss and fibrosis occur in patients with Klinefelter syndrome?

Science.gov (United States)

Van Saen, D; Vloeberghs, V; Gies, I; Mateizel, I; Sermon, K; De Schepper, Jean; Tournaye, H; Goossens, E

2018-06-01

.0%). Germ cells were detectable in testicular biopsies from 21% of adult men for whom no spermatozoa could be retrieved by TESE and in 31.5% of peripubertal KS boys. Very small numbers of spermatogonia (0.03-0.06 spermatogonia/tubule) were detected in three out of four (75%) prepubertal patients. At a foetal age, the number of germ cells was similar for KS and control samples. Increased signs of fibrosis were not present at foetal and prepubertal ages, but peripubertal and adult KS patients showed high levels of fibrosis. N/A. Only four prepubertal biopsies were included in this study, but they all showed a very low germ cell number. A high variability in the number of spermatogonia per mm2 was observed in the limited (n = 5) number of foetal biopsies. However, testicular biopsies from prepubertal and foetal Klinefelter patients are difficult to obtain. Testicular tissue banking at a prepubertal age has been suggested as a potential method for fertility preservation in early diagnosed KS boys. However, our results show that a reduction in germ cell number has already taken place in childhood. Therefore, offering testicular tissue banking in young KS boys to prevent subsequent sterility might be a questionable strategy. However, this should be confirmed in a larger study population. This project was funded by the scientific Fund Willy Gepts from the UZ Brussel (D.V.S., J.D.S.), grants from the Vrije Universiteit Brussel (E.G.) and a Methusalem grant (K.S.). D.V.S is a post-doctoral fellow of the Fonds Wetenschappelijk Onderzoek (FWO; 12M2815N). No conflict of interest is declared.

A study on effective extraction of isoflavones from soy germ using the electron beam

Energy Technology Data Exchange (ETDEWEB)

Park, Jeong Hoon [Radiation Research Division for Industry and Environment, Korea Atomic Energy Research Institute, 1266 Sinjeong-dong, Jeongup-si, 580-185 Jeollabuk-do (Korea, Republic of); Choi, Tae Beom [Radiation Research Division for Industry and Environment, Korea Atomic Energy Research Institute, 1266 Sinjeong-dong, Jeongup-si, 580-185 Jeollabuk-do (Korea, Republic of); Department of Chemistry, Dongguk University, 3 Pildong, Chunggu, Seoul 100-715 (Korea, Republic of); Kim, Sang Wook [Radiation Research Division for Industry and Environment, Korea Atomic Energy Research Institute, 1266 Sinjeong-dong, Jeongup-si, 580-185 Jeollabuk-do (Korea, Republic of)], E-mail: swkim@kaeri.re.kr; Hur, Min Goo; Yang, Seung Dae [Radiation Research Division for Industry and Environment, Korea Atomic Energy Research Institute, 1266 Sinjeong-dong, Jeongup-si, 580-185 Jeollabuk-do (Korea, Republic of); Yu, Kook Hyun [Department of Chemistry, Dongguk University, 3 Pildong, Chunggu, Seoul 100-715 (Korea, Republic of)], E-mail: yukook@dongguk.edu

2009-07-15

Soy germ was irradiated with 2 MeV electron beam with different doses ranging from 1 to 20 kGy. The amount of isoflavones from irradiated soy germ was compared with those from natural soy germ by extracting with ethanol and methanol. The changed amounts of isoflavones were measured by high-performance liquid chromatography with standard calibration curve. Each extract of soy germ was quantified for antioxidant activity with 1,1-diphenyl-2-picryl-hydrazyl (DPPH) radical scavenging method. The amount of isoflavones was found to be increased after electron-beam irradiation. Particularly ethanol extract with 15 kGy irradiated soy germ contained the maximum amount of isoflavones. Antioxidant activity of irradiated soy germ was higher than that of natural soy germ.

Demystifying LiDAR technologies for temperate rainforest in the Pacific Northwest

Science.gov (United States)

Rhonda Mazza; Demetrios Gatziolis

2013-01-01

Light detection and ranging (LiDAR), also known as airborne laser scanning, is a rapidly emerging technology for remote sensing. Used to help map, monitor, and assess natural resources, LiDAR data were first embraced by forestry professionals in Scandinavia as a tool for conducting forest inventories in the mid to late 1990s. Thus early LiDAR theory and applications...

Estimating Stand Volume and Above-Ground Biomass of Urban Forests Using LiDAR

Directory of Open Access Journals (Sweden)

Vincenzo Giannico

2016-04-01

Full Text Available Assessing forest stand conditions in urban and peri-urban areas is essential to support ecosystem service planning and management, as most of the ecosystem services provided are a consequence of forest stand characteristics. However, collecting data for assessing forest stand conditions is time consuming and labor intensive. A plausible approach for addressing this issue is to establish a relationship between in situ measurements of stand characteristics and data from airborne laser scanning (LiDAR. In this study we assessed forest stand volume and above-ground biomass (AGB in a broadleaved urban forest, using a combination of LiDAR-derived metrics, which takes the form of a forest allometric model. We tested various methods for extracting proxies of basal area (BA and mean stand height (H from the LiDAR point-cloud distribution and evaluated the performance of different models in estimating forest stand volume and AGB. The best predictors for both models were the scale parameters of the Weibull distribution of all returns (except the first (proxy of BA and the 95th percentile of the distribution of all first returns (proxy of H. The R2 were 0.81 (p < 0.01 for the stand volume model and 0.77 (p < 0.01 for the AGB model with a RMSE of 23.66 m3·ha−1 (23.3% and 19.59 Mg·ha−1 (23.9%, respectively. We found that a combination of two LiDAR-derived variables (i.e., proxy of BA and proxy of H, which take the form of a forest allometric model, can be used to estimate stand volume and above-ground biomass in broadleaved urban forest areas. Our results can be compared to other studies conducted using LiDAR in broadleaved forests with similar methods.

Nitrogen concentration estimation with hyperspectral LiDAR

Directory of Open Access Journals (Sweden)

O. Nevalainen

2013-10-01

Full Text Available Agricultural lands have strong impact on global carbon dynamics and nitrogen availability. Monitoring changes in agricultural lands require more efficient and accurate methods. The first prototype of a full waveform hyperspectral Light Detection and Ranging (LiDAR instrument has been developed at the Finnish Geodetic Institute (FGI. The instrument efficiently combines the benefits of passive and active remote sensing sensors. It is able to produce 3D point clouds with spectral information included for every point which offers great potential in the field of remote sensing of environment. This study investigates the performance of the hyperspectral LiDAR instrument in nitrogen estimation. The investigation was conducted by finding vegetation indices sensitive to nitrogen concentration using hyperspectral LiDAR data and validating their performance in nitrogen estimation. The nitrogen estimation was performed by calculating 28 published vegetation indices to ten oat samples grown in different fertilization conditions. Reference data was acquired by laboratory nitrogen concentration analysis. The performance of the indices in nitrogen estimation was determined by linear regression and leave-one-out cross-validation. The results indicate that the hyperspectral LiDAR instrument holds a good capability to estimate plant biochemical parameters such as nitrogen concentration. The instrument holds much potential in various environmental applications and provides a significant improvement to the remote sensing of environment.

'Dar' + gerund in Ecuadorian Highland Spanish: contact-induced grammaticalization?

NARCIS (Netherlands)

Olbertz, H.

2008-01-01

The benefactive construction dar + gerund is used in the North Andean region only and is unknown elsewhere in the Spanish-speaking world. Based on the analysis of spontaneous data from Ecuadorian Highland Spanish, this paper provides a linguististic description of dar + gerund and of the social and

Surfing the wave, cycle, life history, and genes/proteins expressed by testicular germ cells. Part 5: intercellular junctions and contacts between germs cells and Sertoli cells and their regulatory interactions, testicular cholesterol, and genes/proteins associated with more than one germ cell generation.

Science.gov (United States)

Hermo, Louis; Pelletier, R-Marc; Cyr, Daniel G; Smith, Charles E

2010-04-01

In the testis, cell adhesion and junctional molecules permit specific interactions and intracellular communication between germ and Sertoli cells and apposed Sertoli cells. Among the many adhesion family of proteins, NCAM, nectin and nectin-like, catenins, and cadherens will be discussed, along with gap junctions between germ and Sertoli cells and the many members of the connexin family. The blood-testis barrier separates the haploid spermatids from blood borne elements. In the barrier, the intercellular junctions consist of many proteins such as occludin, tricellulin, and claudins. Changes in the expression of cell adhesion molecules are also an essential part of the mechanism that allows germ cells to move from the basal compartment of the seminiferous tubule to the adluminal compartment thus crossing the blood-testis barrier and well-defined proteins have been shown to assist in this process. Several structural components show interactions between germ cells to Sertoli cells such as the ectoplasmic specialization which are more closely related to Sertoli cells and tubulobulbar complexes that are processes of elongating spermatids embedded into Sertoli cells. Germ cells also modify several Sertoli functions and this also appears to be the case for residual bodies. Cholesterol plays a significant role during spermatogenesis and is essential for germ cell development. Lastly, we list genes/proteins that are expressed not only in any one specific generation of germ cells but across more than one generation. Copyright 2009 Wiley-Liss, Inc.

Buildings classification from airborne LiDAR point clouds through OBIA and ontology driven approach

Science.gov (United States)

Tomljenovic, Ivan; Belgiu, Mariana; Lampoltshammer, Thomas J.

2013-04-01

the consistency of the developed ontologies, and logical reasoning is performed to infer implicit relations between defined concepts. The ontology for the definition of building is specified using the Ontology Web Language (OWL). It is the most widely used ontology language that is based on Description Logics (DL). DL allows the description of internal properties of modelled concepts (roof typology, shape, area, height etc.) and relationships between objects (IS_A, MEMBER_OF/INSTANCE_OF). It captures terminological knowledge (TBox) as well as assertional knowledge (ABox) - that represents facts about concept instances, i.e. the buildings in airborne LiDAR data. To assess the classification accuracy, ground truth data generated by visual interpretation and calculated classification results in terms of precision and recall are used. The advantages of this approach are: (i) flexibility, (ii) transferability, and (iii) extendibility - i.e. ontology can be extended with further concepts, data properties and object properties.

The application of LiDAR to investigate foredune morphology and vegetation

Science.gov (United States)

Doyle, Thomas B.; Woodroffe, Colin D.

2018-02-01

LiDAR (Light Detection and Ranging) has been used to investigate coastal landform morphology, evolution, and change for almost a decade. Repeated airborne LiDAR surveys can provide the scientific community with significant observations of how shorelines have evolved, which may then enable forecasts of future patterns of change. However, there have been few studies that have considered the application of this new technology to the specific study of foredune morphology and vegetation. The accuracy and appropriateness of airborne LiDAR needs to be assessed, particularly where the density of vegetation may obscure the underlying topography, prior to interpreting derived geomorphic features. This study: i) tests the vertical accuracy of airborne LiDAR in 37 foredune systems along the coast of south-eastern Australia, and ii) demonstrates that it can be used to describe foredune morphology and vegetation in considerable detail. There was a strong correlation between the remotely-sensed LiDAR-derived elevation and field topographic and vegetation surveys (R2 = 0.96). A protocol for obtaining foredune geomorphic and botanical parameters is described. It enables widespread biogeomorphic characterisation along coasts for which LiDAR data is available, which can benefit both coastal managers and researchers alike.

Stability of wheat germ oil obtained by supercritical carbon dioxide ...

African Journals Online (AJOL)

심정은

accumulated gas volume passing through the apparatus were measured using a gas flow meter. Wheat germ oil was ..... of rancidity in wheat germ analyzed by headspace gas chromatography and sensory analysis. J. Agric. Food Chem.

2012 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Upper Naches River, Washington

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Watershed Sciences, Inc. (WSI) collected Light Detection and Ranging (LiDAR) data of the Upper Naches River Valley and Nile Slide area of interest on September 30th,...

Radiotherapy of patients with germ cell tumor

International Nuclear Information System (INIS)

Inomata, Taisuke; Maeda, Tomoho; Yoshida, Shoji; Ogawa, Yasuhiro; Hamada, Fumio; Imajo, Yoshinari; Gose, Kyuhei; Fujiwara, Kiyoshi.

1986-01-01

Twenty-one patients with germ cell tumor who received radiotherapy were discussed. There were eight patients with germinoma, two patients with malignant teratoma, three patients with pineocytoma (out of category of germ cell tumor today) and eight unverified patients. Irradiated dose was mostly from 50 Gy to 60 Gy and local irradiation was performed after whole brain irradiation in many cases. The effect of radiotherapy was not so good in patients with malignant teratoma. On the contrary, it was relatively good in patients with germinoma and five out of eight patients are alive with no symptoms of recurrence. Six out of eight unverified patients are also alive. Among them, several patients with germinoma are considered to be included. Germinoma occupies many cases of germ cell tumor and has a good response to radiotherapy. Against spinal cord metastasis and late recurrence, additional therapy, such as chemotherapy, seems to be useful to improve cure ratio. (author)

Jean-Pierre Falret e a definição do método clínico em psiquiatria

Directory of Open Access Journals (Sweden)

Fernando A. da Cunha Ramos

2010-06-01

Full Text Available Jean-Pierre Falret pode ser considerado a terceira grande figura da medicina mental francesa da primeira metade do século XIX, tendo sido aquele que, após Pinel e Esquirol, foi responsável por dar o acabamento final à obra de fundação da psiquiatria clínica e da patologia mental. A vida de Falret coincide no tempo com o período de domínio cultural e político da França no Ocidente, no qual também a medicina mental francesa se desenvolveu e alcançou seu ápice. Após a morte de Falret, a psiquiatria francesa entra em um lento processo de decadência, sendo sua liderança gradualmente substituída pela da escola psiquiátrica germânica, a qual, ao final do século XIX e início do século XX, dará desenvolvimento a muitas das idéias desse autor. O capítulo introdutório de sua principal obra, Des maladies mentales et des asiles d'aliénés, publicada ao final de sua vida, é considerado, ele próprio, uma obra-prima. Nele, Falret faz a síntese de sua carreira intelectual e clínica, realizando um trabalho de crítica e revisão de inúmeros conceitos da medicina mental da época. Entre as grandes contribuições de Falret, está a definição precisa do método clínico em psiquiatria, com seus três principais aspectos: o enquadre dialético, a perspectiva evolutiva e a supremacia do sujeito psíquico.

Delineation of peatland lagg boundaries from airborne LiDAR

Science.gov (United States)

Langlois, Melanie N.; Richardson, Murray C.; Price, Jonathan S.

2017-09-01

In Canada, peatlands are the most common type of wetland, but boundary delineation in peatland complexes has received little attention in the scientific literature. Typically, peatland boundaries are mapped as crisp, absolute features, and the transitional lagg zone—the ecotone found between a raised bog and the surrounding mineral land—is often overlooked. In this study, we aim (1) to advance existing approaches for detecting and locating laggs and lagg boundaries using airborne LiDAR surveys and (2) to describe the spatial distribution of laggs around raised bog peatlands. Two contrasting spatial analytical approaches for lagg detection were tested using five LiDAR-derived topographic and vegetation indices: topography, vegetation height, topographic wetness index, the standard deviation of the vegetation's height (as a proxy for the complexity of the vegetation's structure), and local indices of elevation variance. Using a dissimilarity approach (edge-detection, split-moving window analysis), no one variable accurately depicted both the lagg-mineral land and bog-lagg boundaries. Some indicators were better at predicting the bog-lagg boundary (i.e., vegetation height) and others at finding the lagg-mineral land boundary (i.e., topography). Dissimilarity analysis reinforces the usefulness of derived variables (e.g., wetness indices) in locating laggs, especially for those with weak topographic and vegetation gradients. When the lagg was confined between the bog and the adjacent upland, it took a linear form, parallel to the peatland's edge and was easier to predict. When the adjacent mineral land was flat or sloping away from the peatland, the lagg was discontinuous and intermittent and more difficult to predict.

Object-Based Canopy Gap Segmentation and Classification: Quantifying the Pros and Cons of Integrating Optical and LiDAR Data

Directory of Open Access Journals (Sweden)

Jian Yang

2015-11-01

Full Text Available Delineating canopy gaps and quantifying gap characteristics (e.g., size, shape, and dynamics are essential for understanding regeneration dynamics and understory species diversity in structurally complex forests. Both high spatial resolution optical and light detection and ranging (LiDAR remote sensing data have been used to identify canopy gaps through object-based image analysis, but few studies have quantified the pros and cons of integrating optical and LiDAR for image segmentation and classification. In this study, we investigate whether the synergistic use of optical and LiDAR data improves segmentation quality and classification accuracy. The segmentation results indicate that the LiDAR-based segmentation best delineates canopy gaps, compared to segmentation with optical data alone, and even the integration of optical and LiDAR data. In contrast, the synergistic use of two datasets provides higher classification accuracy than the independent use of optical or LiDAR (overall accuracy of 80.28% ± 6.16% vs. 68.54% ± 9.03% and 64.51% ± 11.32%, separately. High correlations between segmentation quality and object-based classification accuracy indicate that classification accuracy is largely dependent on segmentation quality in the selected experimental area. The outcome of this study provides valuable insights of the usefulness of data integration into segmentation and classification not only for canopy gap identification but also for many other object-based applications.

IsoDAR@KamLAND:A Conceptual Design Report for the Conventional Facilities arXiv

CERN Document Server

Alonso, Jose R.

This document describes requirements for the caverns to house the cyclotron, beam transport line, and target systems; issues associated with transport and assembly of components on the site; electrical power, cooling and ventilation; as well as issues associated with radiation protection of the environment and staff of KamLAND who will be interfacing with IsoDAR during its operational phases. Specifics of IsoDAR operations at the KamLAND site are not addressed. Recent developments in planning for deployment of IsoDAR include the identification of a potential new site for the experiment, where the target can be placed directly on the equatorial plane of the KamLAND detector, and also, an upgrade of the detector resolution to 3\\%/$\\sqrt{E(MeV)}$. The option of the new site might allow, depending on the results of shielding and background evaluations in KamLAND, for an increase in event rate by about a factor of 1.6 owing to increased solid angle for the detector, improving the physics reach for a same period of...

Tre1, a G protein-coupled receptor, directs transepithelial migration of Drosophila germ cells.

Directory of Open Access Journals (Sweden)

Prabhat S Kunwar

2003-12-01

Full Text Available In most organisms, germ cells are formed distant from the somatic part of the gonad and thus have to migrate along and through a variety of tissues to reach the gonad. Transepithelial migration through the posterior midgut (PMG is the first active step during Drosophila germ cell migration. Here we report the identification of a novel G protein-coupled receptor (GPCR, Tre1, that is essential for this migration step. Maternal tre1 RNA is localized to germ cells, and tre1 is required cell autonomously in germ cells. In tre1 mutant embryos, most germ cells do not exit the PMG. The few germ cells that do leave the midgut early migrate normally to the gonad, suggesting that this gene is specifically required for transepithelial migration and that mutant germ cells are still able to recognize other guidance cues. Additionally, inhibiting small Rho GTPases in germ cells affects transepithelial migration, suggesting that Tre1 signals through Rho1. We propose that Tre1 acts in a manner similar to chemokine receptors required during transepithelial migration of leukocytes, implying an evolutionarily conserved mechanism of transepithelial migration. Recently, the chemokine receptor CXCR4 was shown to direct migration in vertebrate germ cells. Thus, germ cells may more generally use GPCR signaling to navigate the embryo toward their target.

TENSOR MODELING BASED FOR AIRBORNE LiDAR DATA CLASSIFICATION

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N. Li

2016-06-01

Full Text Available Feature selection and description is a key factor in classification of Earth observation data. In this paper a classification method based on tensor decomposition is proposed. First, multiple features are extracted from raw LiDAR point cloud, and raster LiDAR images are derived by accumulating features or the “raw” data attributes. Then, the feature rasters of LiDAR data are stored as a tensor, and tensor decomposition is used to select component features. This tensor representation could keep the initial spatial structure and insure the consideration of the neighborhood. Based on a small number of component features a k nearest neighborhood classification is applied.

Diet Matters: Endotoxin in the Diet Impacts the Level of Allergic Sensitization in Germ-Free Mice.

Directory of Open Access Journals (Sweden)

Martin Schwarzer

Full Text Available Germ-free animals have been used to define the vital role of commensal bacteria on the maturation of the host immune system. However, the role of bacterial residues in diet in this setting is poorly understood. Here we investigated the effect of bacterial contamination in sterile diet on the level of allergic sensitization in germ-free mice. Sterile grain-based diets ST1 and R03 were tested for the level of bacterial contamination. ST1 contained higher amount of bacterial DNA, approximately ten times more endotoxin, and induced higher, TLR4-dependent, cytokine production in dendritic cells compared to R03. In a germ-free mouse model of sensitization to the major birch pollen allergen Bet v 1, feeding on ST1 for at least two generations was associated with decreased production of allergen-specific IgE and IgG1 antibodies in sera in comparison to R03. Furthermore, reduced levels of allergen-specific and ConA-induced cytokines IL-4, IL-5 and IL-13 accompanied by increased levels of IFN-γ were detected in splenocytes cultures of these mice. Our results show that contamination of experimental diet with bacterial residues, such as endotoxin, significantly affects the development of allergic sensitization in germ-free mice. Therefore, careful selection of sterile food is critical for the outcomes of germ-free or gnotobiotic experimental models of immune-deviated diseases.

Guns, Germs and Steel

Indian Academy of Sciences (India)

Home; Journals; Resonance – Journal of Science Education; Volume 6; Issue 1. Guns, Germs and Steel - A Short History of Everybody for the Last 13,000 years. Suri Venkatachalam. Book Review Volume 6 Issue 1 January 2001 pp 84-88. Fulltext. Click here to view fulltext PDF. Permanent link:

FLI-1 Flightless-1 and LET-60 Ras control germ line morphogenesis in C. elegans

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Dentler William L

2008-05-01

Full Text Available Abstract Background In the C. elegans germ line, syncytial germ line nuclei are arranged at the cortex of the germ line as they exit mitosis and enter meiosis, forming a nucleus-free core of germ line cytoplasm called the rachis. Molecular mechanisms of rachis formation and germ line organization are not well understood. Results Mutations in the fli-1 gene disrupt rachis organization without affecting meiotic differentiation, a phenotype in C. elegans referred to here as the germ line morphogenesis (Glm phenotype. In fli-1 mutants, chains of meiotic germ nuclei spanned the rachis and were partially enveloped by invaginations of germ line plasma membrane, similar to nuclei at the cortex. Extensions of the somatic sheath cells that surround the germ line protruded deep inside the rachis and were associated with displaced nuclei in fli-1 mutants. fli-1 encodes a molecule with leucine-rich repeats and gelsolin repeats similar to Drosophila flightless 1 and human Fliih, which have been shown to act as cytoplasmic actin regulators as well as nuclear transcriptional regulators. Mutations in let-60 Ras, previously implicated in germ line development, were found to cause the Glm phenotype. Constitutively-active LET-60 partially rescued the fli-1 Glm phenotype, suggesting that LET-60 Ras and FLI-1 might act together to control germ line morphogenesis. Conclusion FLI-1 controls germ line morphogenesis and rachis organization, a process about which little is known at the molecular level. The LET-60 Ras GTPase might act with FLI-1 to control germ line morphogenesis.

Liquid waste management: The case of Bahir Dar, Ethiopia ...

African Journals Online (AJOL)

Background: Human beings pollute the environment with their industrial and domestic wastes. In Bahir Dar Town there is no conventional municipal waste water collection and treatment system. Objective: The aim of this study was to describe the liquid waste disposal practices of the residents of Bahir Dar Town and to ...

Localisation of RNAs into the germ plasm of vitellogenic Xenopus oocytes.

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Sarbjit Nijjar

Full Text Available We have studied the localisation of mRNAs in full-grown Xenopus laevis oocytes by injecting fluorescent RNAs, followed by confocal microscopy of the oocyte cortex. Concentrating on RNA encoding the Xenopus Nanos homologue, nanos1 (formerly Xcat2, we find that it consistently localised into aggregated germ plasm ribonucleoprotein (RNP particles, independently of cytoskeletal integrity. This implies that a diffusion/entrapment-mediated mechanism is active, as previously reported for previtellogenic oocytes. Sometimes this was accompanied by localisation into scattered particles of the "late", Vg1/VegT pathway; occasionally only late pathway localisation was seen. The Xpat RNA behaved in an identical fashion and for neither RNA was the localisation changed by any culture conditions tested. The identity of the labelled RNP aggregates as definitive germ plasm was confirmed by their inclusion of abundant mitochondria and co-localisation with the germ plasm protein Hermes. Further, the nanos1/Hermes RNP particles are interspersed with those containing the germ plasm protein Xpat. These aggregates may be followed into the germ plasm of unfertilized eggs, but with a notable reduction in its quantity, both in terms of injected molecules and endogenous structures. Our results conflict with previous reports that there is no RNA localisation in large oocytes, and that during mid-oogenesis even germ plasm RNAs localise exclusively by the late pathway. We find that in mid oogenesis nanos1 RNA also localises to germ plasm but also by the late pathway. Late pathway RNAs, Vg1 and VegT, also may localise into germ plasm. Our results support the view that mechanistically the two modes of localisation are extremely similar, and that in an injection experiment RNAs might utilise either pathway, the distinction in fates being very subtle and subject to variation. We discuss these results in relation to their biological significance and the results of others.

USGS Atchafalaya 2 LiDAR

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Light Detection and Ranging (LiDAR) dataset is a survey of the Atchafalaya Basin project area. The entire survey area for Atchafalaya encompasses approximately...

File list: Pol.Gon.05.AllAg.Testicular_germ_cells [Chip-atlas[Archive

Lifescience Database Archive (English)

Full Text Available Pol.Gon.05.AllAg.Testicular_germ_cells mm9 RNA polymerase Gonad Testicular germ cel...ls http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Gon.05.AllAg.Testicular_germ_cells.bed ...

File list: DNS.Gon.05.AllAg.Testicular_germ_cells [Chip-atlas[Archive

Lifescience Database Archive (English)

Full Text Available DNS.Gon.05.AllAg.Testicular_germ_cells mm9 DNase-seq Gonad Testicular germ cells ht...tp://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/DNS.Gon.05.AllAg.Testicular_germ_cells.bed ...

Registration of vehicle based panoramic image and LiDAR point cloud

Science.gov (United States)

Chen, Changjun; Cao, Liang; Xie, Hong; Zhuo, Xiangyu

2013-10-01

Higher quality surface information would be got when data from optical images and LiDAR were integrated, owing to the fact that optical images and LiDAR point cloud have unique characteristics that make them preferable in many applications. While most previous works focus on registration of pinhole perspective cameras to 2D or 3D LiDAR data. In this paper, a method for the registration of vehicle based panoramic image and LiDAR point cloud is proposed. Using the translation among panoramic image, single CCD image, laser scanner and Position and Orientation System (POS) along with the GPS/IMU data, precise co-registration between the panoramic image and the LiDAR point cloud in the world system is achieved. Results are presented under a real world data set collected by a new developed Mobile Mapping System (MMS) integrated with a high resolution panoramic camera, two laser scanners and a POS.

2006 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Eastern Washington and River Corridors

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Watershed Sciences, Inc. (WS) collected Light Detection and Ranging (LiDAR) data in eastern Washington, eastern Oregon, and southern Canada in October and November,...

Characterization of germ cell-specific expression of the orphan nuclear receptor, germ cell nuclear factor.

Science.gov (United States)

Katz, D; Niederberger, C; Slaughter, G R; Cooney, A J

1997-10-01

Nuclear receptors, such as those for androgens, estrogens, and progesterones, control many reproductive processes. Proteins with structures similar to these receptors, but for which ligands have not yet been identified, have been termed orphan nuclear receptors. One of these orphans, germ cell nuclear factor (GCNF), has been shown to be germ cell specific in the adult and, therefore, may also participate in the regulation of reproductive functions. In this paper, we examine more closely the expression patterns of GCNF in germ cells to begin to define spatio-temporal domains of its activity. In situ hybridization showed that GCNF messenger RNA (mRNA) is lacking in the testis of hypogonadal mutant mice, which lack developed spermatids, but is present in the wild-type testis. Thus, GCNF is, indeed, germ cell specific in the adult male. Quantitation of the specific in situ hybridization signal in wild-type testis reveals that GCNF mRNA is most abundant in stage VII round spermatids. Similarly, Northern analysis and specific in situ hybridization show that GCNF expression first occurs in testis of 20-day-old mice, when round spermatids first emerge. Therefore, in the male, GCNF expression occurs postmeiotically and may participate in the morphological changes of the maturing spermatids. In contrast, female expression of GCNF is shown in growing oocytes that have not completed the first meiotic division. Thus, GCNF in the female is expressed before the completion of meiosis. Finally, the nature of the two different mRNAs that hybridize to the GCNF complementary DNA was studied. Although both messages contain the DNA binding domain, only the larger message is recognized by a probe from the extreme 3' untranslated region. In situ hybridization with these differential probes demonstrates that both messages are present in growing oocytes. In addition, the coding region and portions of the 3' untranslated region of the GCNF complementary DNA are conserved in the rat.

File list: Oth.Gon.20.AllAg.Testicular_germ_cells [Chip-atlas[Archive

Lifescience Database Archive (English)

Full Text Available Oth.Gon.20.AllAg.Testicular_germ_cells mm9 TFs and others Gonad Testicular germ cel...ls http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Gon.20.AllAg.Testicular_germ_cells.bed ...

File list: Oth.Gon.10.AllAg.Testicular_germ_cells [Chip-atlas[Archive

Lifescience Database Archive (English)

Full Text Available Oth.Gon.10.AllAg.Testicular_germ_cells mm9 TFs and others Gonad Testicular germ cel...ls http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Gon.10.AllAg.Testicular_germ_cells.bed ...

Dafachronic acid inhibits C. elegans germ cell proliferation in a DAF-12-dependent manner.

Science.gov (United States)

Mukherjee, Madhumati; Chaudhari, Snehal N; Balachandran, Riju S; Vagasi, Alexandra S; Kipreos, Edward T

2017-12-15

Dafachronic acid (DA) is a bile acid-like steroid hormone that regulates dauer formation, heterochrony, and lifespan in C. elegans. Here, we describe that DA is an inhibitor of C. elegans germ stem cell proliferation in adult hermaphrodites. Using a C. elegans germ cell primary culture system, we show that DA inhibits the proliferation of germ cells in vitro. Exogenous DA reduces the frequency of large tumors in adult tumorous germline mutants and decreases the proliferation of wild-type germ stem cells in adult hermaphrodites. In contrast, DA has no appreciable effect on the proliferation of larval-stage germ cells in wild type. The inhibition of adult germ cell proliferation by DA requires its canonical receptor DAF-12. Blocking DA production by inactivating the cytochrome P450 DAF-9 increases germ cell proliferation in wild-type adult hermaphrodites and the frequency of large tumors in germline tumorous mutants, suggesting that DA inhibits the rate of germ cell proliferation under normal growth conditions. Copyright © 2017 Elsevier Inc. All rights reserved.

Foodborne Germs and Illnesses

Science.gov (United States)

... Español (Spanish) Recommend on Facebook Tweet Share Compartir What Causes Food Poisoning? Many different disease-causing germs can contaminate ... email address: Enter Email Address What’s this? Submit What's this? Submit Button ... of Foodborne Illness in the U.S. Food Safety is a CDC Winnable Battle Foodborne Illness ...

Insights into female germ cell biology: from in vivo development to in vitro derivations.

Science.gov (United States)

Jung, Dajung; Kee, Kehkooi

2015-01-01

Understanding the mechanisms of human germ cell biology is important for developing infertility treatments. However, little is known about the mechanisms that regulate human gametogenesis due to the difficulties in collecting samples, especially germ cells during fetal development. In contrast to the mitotic arrest of spermatogonia stem cells in the fetal testis, female germ cells proceed into meiosis and began folliculogenesis in fetal ovaries. Regulations of these developmental events, including the initiation of meiosis and the endowment of primordial follicles, remain an enigma. Studying the molecular mechanisms of female germ cell biology in the human ovary has been mostly limited to spatiotemporal characterizations of genes or proteins. Recent efforts in utilizing in vitro differentiation system of stem cells to derive germ cells have allowed researchers to begin studying molecular mechanisms during human germ cell development. Meanwhile, the possibility of isolating female germline stem cells in adult ovaries also excites researchers and generates many debates. This review will mainly focus on presenting and discussing recent in vivo and in vitro studies on female germ cell biology in human. The topics will highlight the progress made in understanding the three main stages of germ cell developments: namely, primordial germ cell formation, meiotic initiation, and folliculogenesis.

Important LiDAR metrics for discriminating forest tree species in Central Europe

Science.gov (United States)

Shi, Yifang; Wang, Tiejun; Skidmore, Andrew K.; Heurich, Marco

2018-03-01

Numerous airborne LiDAR-derived metrics have been proposed for classifying tree species. Yet an in-depth ecological and biological understanding of the significance of these metrics for tree species mapping remains largely unexplored. In this paper, we evaluated the performance of 37 frequently used LiDAR metrics derived under leaf-on and leaf-off conditions, respectively, for discriminating six different tree species in a natural forest in Germany. We firstly assessed the correlation between these metrics. Then we applied a Random Forest algorithm to classify the tree species and evaluated the importance of the LiDAR metrics. Finally, we identified the most important LiDAR metrics and tested their robustness and transferability. Our results indicated that about 60% of LiDAR metrics were highly correlated to each other (|r| > 0.7). There was no statistically significant difference in tree species mapping accuracy between the use of leaf-on and leaf-off LiDAR metrics. However, combining leaf-on and leaf-off LiDAR metrics significantly increased the overall accuracy from 58.2% (leaf-on) and 62.0% (leaf-off) to 66.5% as well as the kappa coefficient from 0.47 (leaf-on) and 0.51 (leaf-off) to 0.58. Radiometric features, especially intensity related metrics, provided more consistent and significant contributions than geometric features for tree species discrimination. Specifically, the mean intensity of first-or-single returns as well as the mean value of echo width were identified as the most robust LiDAR metrics for tree species discrimination. These results indicate that metrics derived from airborne LiDAR data, especially radiometric metrics, can aid in discriminating tree species in a mixed temperate forest, and represent candidate metrics for tree species classification and monitoring in Central Europe.

Iowa LiDAR Mapping Project

Data.gov (United States)

Federal Emergency Management Agency, Department of Homeland Security — This is collection level metadata for LAS and ASCII data files from the statewide Iowa Lidar Project. The Iowa Light Detection and Ranging (LiDAR) Project collects...

Childhood Central Nervous System Germ Cell Tumors Treatment (PDQ®)—Patient Version

Science.gov (United States)

Childhood central nervous system (CNS) germ cell tumors form from germ cells (a type of cell that forms as a fetus develops and later becomes sperm in the testicles or eggs in the ovaries). Learn about the signs, tests to diagnose, and treatment of pediatric germ cell tumors in the brain in this expert-reviewed summary.

Germ cell neoplasia in situ (GCNIS)

DEFF Research Database (Denmark)

Berney, Daniel M; Looijenga, Leendert H J; Idrees, Muhammad

2016-01-01

The pre-invasive lesion associated with post-pubertal malignant germ cell tumours of the testis was first recognized in the early 1970s and confirmed by a number of observational and follow-up studies. Until this year, this scientific story has been confused by resistance to the entity and disagr......The pre-invasive lesion associated with post-pubertal malignant germ cell tumours of the testis was first recognized in the early 1970s and confirmed by a number of observational and follow-up studies. Until this year, this scientific story has been confused by resistance to the entity...... and disagreement on its name. Initially termed 'carcinoma in situ' (CIS), it has also been known as 'intratubular germ cell neoplasia, unclassified' (IGCNU) and 'testicular intraepithelial neoplasia' (TIN). In this paper, we review the history of discovery and controversy concerning these names and introduce...

Isolation and purification of wheat germ agglutinin and analysis of its properties

Science.gov (United States)

Wang, Han

2017-12-01

In this paper, the wheat germ agglutinin was isolated and purified by affinity chromatography of chicken ovomucoid as ligand. The physicochemical properties were analyzed. The chicken ovomucoid was isolated from egg white and conjugated to affinity chromatography column agarose gel to prepare affinity adsorbent. The crude extract of wheat germ was freezedried by affinity chromatography. The physicochemical properties were analyzed by SDSpolyacrylamide gel electrophoresis and isoelectric focusing electrophoresis. And the relative molecular mass and isoelectric point of wheat germ agglutinin were obtained, and the high efficiency of purification of wheat germ agglutinin was proved by affinity chromatography.

PERFORMANCE EVALUATION OF sUAS EQUIPPED WITH VELODYNE HDL-32E LiDAR SENSOR

Directory of Open Access Journals (Sweden)

G. Jozkow

2017-08-01

Full Text Available The Velodyne HDL-32E laser scanner is used more frequently as main mapping sensor in small commercial UASs. However, there is still little information about the actual accuracy of point clouds collected with such UASs. This work evaluates empirically the accuracy of the point cloud collected with such UAS. Accuracy assessment was conducted in four aspects: impact of sensors on theoretical point cloud accuracy, trajectory reconstruction quality, and internal and absolute point cloud accuracies. Theoretical point cloud accuracy was evaluated by calculating 3D position error knowing errors of used sensors. The quality of trajectory reconstruction was assessed by comparing position and attitude differences from forward and reverse EKF solution. Internal and absolute accuracies were evaluated by fitting planes to 8 point cloud samples extracted for planar surfaces. In addition, the absolute accuracy was also determined by calculating point 3D distances between LiDAR UAS and reference TLS point clouds. Test data consisted of point clouds collected in two separate flights performed over the same area. Executed experiments showed that in tested UAS, the trajectory reconstruction, especially attitude, has significant impact on point cloud accuracy. Estimated absolute accuracy of point clouds collected during both test flights was better than 10 cm, thus investigated UAS fits mapping-grade category.

Performance Evaluation of sUAS Equipped with Velodyne HDL-32E LiDAR Sensor

Science.gov (United States)

Jozkow, G.; Wieczorek, P.; Karpina, M.; Walicka, A.; Borkowski, A.

2017-08-01

The Velodyne HDL-32E laser scanner is used more frequently as main mapping sensor in small commercial UASs. However, there is still little information about the actual accuracy of point clouds collected with such UASs. This work evaluates empirically the accuracy of the point cloud collected with such UAS. Accuracy assessment was conducted in four aspects: impact of sensors on theoretical point cloud accuracy, trajectory reconstruction quality, and internal and absolute point cloud accuracies. Theoretical point cloud accuracy was evaluated by calculating 3D position error knowing errors of used sensors. The quality of trajectory reconstruction was assessed by comparing position and attitude differences from forward and reverse EKF solution. Internal and absolute accuracies were evaluated by fitting planes to 8 point cloud samples extracted for planar surfaces. In addition, the absolute accuracy was also determined by calculating point 3D distances between LiDAR UAS and reference TLS point clouds. Test data consisted of point clouds collected in two separate flights performed over the same area. Executed experiments showed that in tested UAS, the trajectory reconstruction, especially attitude, has significant impact on point cloud accuracy. Estimated absolute accuracy of point clouds collected during both test flights was better than 10 cm, thus investigated UAS fits mapping-grade category.

G-LiHT: Goddard's LiDAR, Hyperspectral and Thermal Airborne Imager

Science.gov (United States)

Cook, Bruce; Corp, Lawrence; Nelson, Ross; Morton, Douglas; Ranson, Kenneth J.; Masek, Jeffrey; Middleton, Elizabeth

2012-01-01

Scientists at NASA's Goddard Space Flight Center have developed an ultra-portable, low-cost, multi-sensor remote sensing system for studying the form and function of terrestrial ecosystems. G-LiHT integrates two LIDARs, a 905 nanometer single beam profiler and 1550 nm scanner, with a narrowband (1.5 nanometers) VNIR imaging spectrometer and a broadband (8-14 micrometers) thermal imager. The small footprint (approximately 12 centimeters) LIDAR data and approximately 1 meter ground resolution imagery are advantageous for high resolution applications such as the delineation of canopy crowns, characterization of canopy gaps, and the identification of sparse, low-stature vegetation, which is difficult to detect from space-based instruments and large-footprint LiDAR. The hyperspectral and thermal imagery can be used to characterize species composition, variations in biophysical variables (e.g., photosynthetic pigments), surface temperature, and responses to environmental stressors (e.g., heat, moisture loss). Additionally, the combination of LIDAR optical, and thermal data from G-LiHT is being used to assess forest health by sensing differences in foliage density, photosynthetic pigments, and transpiration. Low operating costs (approximately $1 ha) have allowed us to evaluate seasonal differences in LiDAR, passive optical and thermal data, which provides insight into year-round observations from space. Canopy characteristics and tree allometry (e.g., crown height:width, canopy:ground reflectance) derived from G-LiHT data are being used to generate realistic scenes for radiative transfer models, which in turn are being used to improve instrument design and ensure continuity between LiDAR instruments. G-LiHT has been installed and tested in aircraft with fuselage viewports and in a custom wing-mounted pod that allows G-LiHT to be flown on any Cessna 206, a common aircraft in use throughout the world. G-LiHT is currently being used for forest biomass and growth estimation

Overview of the Graphical User Interface for the GERM Code (GCR Event-Based Risk Model

Science.gov (United States)

Kim, Myung-Hee; Cucinotta, Francis A.

2010-01-01

The descriptions of biophysical events from heavy ions are of interest in radiobiology, cancer therapy, and space exploration. The biophysical description of the passage of heavy ions in tissue and shielding materials is best described by a stochastic approach that includes both ion track structure and nuclear interactions. A new computer model called the GCR Event-based Risk Model (GERM) code was developed for the description of biophysical events from heavy ion beams at the NASA Space Radiation Laboratory (NSRL). The GERM code calculates basic physical and biophysical quantities of high-energy protons and heavy ions that have been studied at NSRL for the purpose of simulating space radiobiological effects. For mono-energetic beams, the code evaluates the linear-energy transfer (LET), range (R), and absorption in tissue equivalent material for a given Charge (Z), Mass Number (A) and kinetic energy (E) of an ion. In addition, a set of biophysical properties are evaluated such as the Poisson distribution of ion or delta-ray hits for a specified cellular area, cell survival curves, and mutation and tumor probabilities. The GERM code also calculates the radiation transport of the beam line for either a fixed number of user-specified depths or at multiple positions along the Bragg curve of the particle. The contributions from primary ion and nuclear secondaries are evaluated. The GERM code accounts for the major nuclear interaction processes of importance for describing heavy ion beams, including nuclear fragmentation, elastic scattering, and knockout-cascade processes by using the quantum multiple scattering fragmentation (QMSFRG) model. The QMSFRG model has been shown to be in excellent agreement with available experimental data for nuclear fragmentation cross sections, and has been used by the GERM code for application to thick target experiments. The GERM code provides scientists participating in NSRL experiments with the data needed for the interpretation of their

2002 Puget Sound LiDAR Consortium (PSLC) Unclassified Topographic LiDAR: Puget Sound Lowlands Washington

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — TerraPoint surveyed and created this data for the Puget Sound LiDAR Consortium under contract. The area surveyed is approximately 730 square miles and covers the...

3D turbulence measurements in inhomogeneous boundary layers with three wind LiDARs

Science.gov (United States)

Carbajo Fuertes, Fernando; Valerio Iungo, Giacomo; Porté-Agel, Fernando

2014-05-01

One of the most challenging tasks in atmospheric anemometry is obtaining reliable turbulence measurements of inhomogeneous boundary layers at heights or in locations where is not possible or convenient to install tower-based measurement systems, e.g. mountainous terrain, cities, wind farms, etc. Wind LiDARs are being extensively used for the measurement of averaged vertical wind profiles, but they can only successfully accomplish this task under the limiting conditions of flat terrain and horizontally homogeneous flow. Moreover, it has been shown that common scanning strategies introduce large systematic errors in turbulence measurements, regardless of the characteristics of the flow addressed. From the point of view of research, there exist a variety of techniques and scanning strategies to estimate different turbulence quantities but most of them rely in the combination of raw measurements with atmospheric models. Most of those models are only valid under the assumption of horizontal homogeneity. The limitations stated above can be overcome by a new triple LiDAR technique which uses simultaneous measurements from three intersecting Doppler wind LiDARs. It allows for the reconstruction of the three-dimensional velocity vector in time as well as local velocity gradients without the need of any turbulence model and with minimal assumptions [EGU2013-9670]. The triple LiDAR technique has been applied to the study of the flow over the campus of EPFL in Lausanne (Switzerland). The results show the potential of the technique for the measurement of turbulence in highly complex boundary layer flows. The technique is particularly useful for micrometeorology and wind engineering studies.

Primordial germ cells and amnion development in the avian embryo

NARCIS (Netherlands)

De Melo Bernardo, Ana

2016-01-01

Primordial germ cells (PGCs) are the progenitors of the gametes, responsible for transmitting genetic information from generation to generation. Although there is a long history of gamete biology research, there is still a lot to be learned about many of the mechanisms underlying germ cell

Editorial Introduction [to Female Germ Cells: Biology and Genetic Risk

Science.gov (United States)

This is an editorial introduction to the special issue of utation Research, titled, emale Germ Cells: Biology and Genetic isk, which is an attempt to present a collection of papers that emphasize the distinct properties of female germ cells and their characteristic response to mu...

Modelling stand biomass fractions in Galician Eucalyptus globulus plantations by use of different LiDAR pulse densities

Energy Technology Data Exchange (ETDEWEB)

Gonzalez-Ferreiro, E.; Miranda, D.; Barreiro-Fernandez, L.; Bujan, S.; Garcia-Gutierrez, J.; Dieguez-Aranda, U.

2013-07-01

Aims of study: To evaluate the potential use of canopy height and intensity distributions, determined by airborne LiDAR, for the estimation of crown, stem and aboveground biomass fractions. To assess the effects of a reduction in LiDAR pulse densities on model precision. Area of study: The study area is located in Galicia, NW Spain. The forests are representative of Eucalyptus globulus stands in NW Spain, characterized by low-intensity silvicultural treatments and by the presence of tall shrub. Material and methods: Linear, multiplicative power and exponential models were used to establish empirical relationships between field measurements and LiDAR metrics. A random selection of LiDAR returns and a comparison of the prediction errors by LiDAR pulse density factor were performed to study a possible loss of fit in these models. Main results: Models showed similar goodness-of-fit statistics to those reported in the international literature. R2 ranged from 0.52 to 0.75 for stand crown biomass, from 0.64 to 0.87 for stand stem biomass, and from 0.63 to 0.86 for stand aboveground biomass. The RMSE/MEAN 100 of the set of fitted models ranged from 17.4% to 28.4%. Models precision was essentially maintained when 87.5% of the original point cloud was reduced, i.e. a reduction from 4 pulses m{sup 2} to 0.5 pulses m{sup 2}. Research highlights: Considering the results of this study, the low-density LiDAR data that are released by the Spanish National Geographic Institute will be an excellent source of information for reducing the cost of forest inventories. (Author)

2012 Puget Sound LiDAR Consortium (PSLC) Topographic LiDAR: Chehalis River Watershed Area, Washington

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Watershed Sciences, Inc. (WSI) collected Light Detection and Ranging (LiDAR) data for the Chehalis River Watershed study area on January 28th, February 2nd-7th,...

Calibration and Validation of a Detailed Architectural Canopy Model Reconstruction for the Simulation of Synthetic Hemispherical Images and Airborne LiDAR Data

Directory of Open Access Journals (Sweden)

Magnus Bremer

2017-02-01

Full Text Available Canopy density measures such as the Leaf Area Index (LAI have become standardized mapping products derived from airborne and terrestrial Light Detection And Ranging (aLiDAR and tLiDAR, respectively data. A specific application of LiDAR point clouds is their integration into radiative transfer models (RTM of varying complexity. Using, e.g., ray tracing, this allows flexible simulations of sub-canopy light condition and the simulation of various sensors such as virtual hemispherical images or waveform LiDAR on a virtual forest plot. However, the direct use of LiDAR data in RTMs shows some limitations in the handling of noise, the derivation of surface areas per LiDAR point and the discrimination of solid and porous canopy elements. In order to address these issues, a strategy upgrading tLiDAR and Digital Hemispherical Photographs (DHP into plausible 3D architectural canopy models is suggested. The presented reconstruction workflow creates an almost unbiased virtual 3D representation of branch and leaf surface distributions, minimizing systematic errors due to the object–sensor relationship. The models are calibrated and validated using DHPs. Using the 3D models for simulations, their capabilities for the description of leaf density distributions and the simulation of aLiDAR and DHP signatures are shown. At an experimental test site, the suitability of the models, in order to systematically simulate and evaluate aLiDAR based LAI predictions under various scan settings is proven. This strategy makes it possible to show the importance of laser point sampling density, but also the diversity of scan angles and their quantitative effect onto error margins.

Esrp1 is a marker of mouse fetal germ cells and differentially expressed during spermatogenesis.

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Shaghayegh Saeidi

Full Text Available ESRP1 regulates alternative splicing, producing multiple transcripts from its target genes in epithelial tissues. It is upregulated during mesenchymal to epithelial transition associated with reprogramming of fibroblasts to iPS cells and has been linked to pluripotency. Mouse fetal germ cells are the founders of the adult gonadal lineages and we found that Esrp1 mRNA was expressed in both male and female germ cells but not in gonadal somatic cells at various stages of gonadal development (E12.5-E15.5. In the postnatal testis, Esrp1 mRNA was highly expressed in isolated cell preparations enriched for spermatogonia but expressed at lower levels in those enriched for pachytene spermatocytes and round spermatids. Co-labelling experiments with PLZF and c-KIT showed that ESRP1 was localized to nuclei of both Type A and B spermatogonia in a speckled pattern, but was not detected in SOX9+ somatic Sertoli cells. No co-localization with the nuclear speckle marker, SC35, which has been associated with post-transcriptional splicing, was observed, suggesting that ESRP1 may be associated with co-transcriptional splicing or have other functions. RNA interference mediated knockdown of Esrp1 expression in the seminoma-derived Tcam-2 cell line demonstrated that ESRP1 regulates alternative splicing of mRNAs in a non-epithelial cell germ cell tumour cell line.

Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE

Science.gov (United States)

Wang, Xin; Zhao, Yongjun; Wong, Kim; Ehlers, Peter; Kohara, Yuji; Jones, Steven J; Marra, Marco A; Holt, Robert A; Moerman, Donald G; Hansen, Dave

2009-01-01

Background Germ cells must progress through elaborate developmental stages from an undifferentiated germ cell to a fully differentiated gamete. Some of these stages include exiting mitosis and entering meiosis, progressing through the various stages of meiotic prophase, adopting either a male (sperm) or female (oocyte) fate, and completing meiosis. Additionally, many of the factors needed to drive embryogenesis are synthesized in the germ line. To increase our understanding of the genes that might be necessary for the formation and function of the germ line, we have constructed a SAGE library from hand dissected C. elegans hermaphrodite gonads. Results We found that 4699 genes, roughly 21% of all known C. elegans genes, are expressed in the adult hermaphrodite germ line. Ribosomal genes are highly expressed in the germ line; roughly four fold above their expression levels in the soma. We further found that 1063 of the germline-expressed genes have enriched expression in the germ line as compared to the soma. A comparison of these 1063 germline-enriched genes with a similar list of genes prepared using microarrays revealed an overlap of 460 genes, mutually reinforcing the two lists. Additionally, we identified 603 germline-enriched genes, supported by in situ expression data, which were not previously identified. We also found >4 fold enrichment for RNA binding proteins in the germ line as compared to the soma. Conclusion Using multiple technological platforms provides a more complete picture of global gene expression patterns. Genes involved in RNA metabolism are expressed at a significantly higher level in the germ line than the soma, suggesting a stronger reliance on RNA metabolism for control of the expression of genes in the germ line. Additionally, the number and expression level of germ line expressed genes on the X chromosome is lower than expected based on a random distribution. PMID:19426519

Identification of genes expressed in the hermaphrodite germ line of C. elegans using SAGE

Directory of Open Access Journals (Sweden)

Holt Robert A

2009-05-01

Full Text Available Abstract Background Germ cells must progress through elaborate developmental stages from an undifferentiated germ cell to a fully differentiated gamete. Some of these stages include exiting mitosis and entering meiosis, progressing through the various stages of meiotic prophase, adopting either a male (sperm or female (oocyte fate, and completing meiosis. Additionally, many of the factors needed to drive embryogenesis are synthesized in the germ line. To increase our understanding of the genes that might be necessary for the formation and function of the germ line, we have constructed a SAGE library from hand dissected C. elegans hermaphrodite gonads. Results We found that 4699 genes, roughly 21% of all known C. elegans genes, are expressed in the adult hermaphrodite germ line. Ribosomal genes are highly expressed in the germ line; roughly four fold above their expression levels in the soma. We further found that 1063 of the germline-expressed genes have enriched expression in the germ line as compared to the soma. A comparison of these 1063 germline-enriched genes with a similar list of genes prepared using microarrays revealed an overlap of 460 genes, mutually reinforcing the two lists. Additionally, we identified 603 germline-enriched genes, supported by in situ expression data, which were not previously identified. We also found >4 fold enrichment for RNA binding proteins in the germ line as compared to the soma. Conclusion Using multiple technological platforms provides a more complete picture of global gene expression patterns. Genes involved in RNA metabolism are expressed at a significantly higher level in the germ line than the soma, suggesting a stronger reliance on RNA metabolism for control of the expression of genes in the germ line. Additionally, the number and expression level of germ line expressed genes on the X chromosome is lower than expected based on a random distribution.

Development of LiDAR measurements for the German offshore test site

International Nuclear Information System (INIS)

Rettenmeier, A; Kuehn, M; Waechter, M; Rahm, S; Mellinghoff, H; Siegmeier, B; Reeder, L

2008-01-01

The paper introduces the content of the recently started joint research project 'Development of LiDAR measurements for the German Offshore Test Site' which has the objective to support other research projects at the German offshore test site 'alpha ventus'. The project has started before the erection of the offshore wind farm and one aim is to give recommendations concerning LiDAR technology useable for offshore measurement campaigns and data analysis. The work is organized in four work packages. The work package LiDAR technology deals with the specification, acquisition and calibration of a commercial LiDAR system for the measurement campaigns. Power curve measurements are dedicated to power curve assessment with ground-based LiDAR using standard statistical methods. Additionally, it deals with the development of new methods for the measurement of non-steady short-term power curves. Wind field research aims at the development of wake loading simulation methods of wind turbines and the exploration of loading control strategies and nacelle-based wind field measurement techniques. Finally, dissemination of results to the industry takes place in work package Technology transfer

Immature germ cells in semen - correlation with total sperm count and sperm motility.

Science.gov (United States)

Patil, Priya S; Humbarwadi, Rajendra S; Patil, Ashalata D; Gune, Anita R

2013-07-01

Current data regarding infertility suggests that male factor contributes up to 30% of the total cases of infertility. Semen analysis reveals the presence of spermatozoa as well as a number of non-sperm cells, presently being mentioned in routine semen report as "round cells" without further differentiating them into leucocytes or immature germ cells. The aim of this work was to study a simple, cost-effective, and convenient method for differentiating the round cells in semen into immature germ cells and leucocytes and correlating them with total sperm counts and motility. Semen samples from 120 males, who had come for investigation for infertility, were collected, semen parameters recorded, and stained smears studied for different round cells. Statistical analysis of the data was done to correlate total sperm counts and sperm motility with the occurrence of immature germ cells and leucocytes. The average shedding of immature germ cells in different groups with normal and low sperm counts was compared. The clinical significance of "round cells" in semen and their differentiation into leucocytes and immature germ cells are discussed. Round cells in semen can be differentiated into immature germ cells and leucocytes using simple staining methods. The differential counts mentioned in a semen report give valuable and clinically relevant information. In this study, we observed a negative correlation between total count and immature germ cells, as well as sperm motility and shedding of immature germ cells. The latter was statistically significant with a P value 0.000.

Generation of male differentiated germ cells from various types of stem cells.

Science.gov (United States)

Hou, Jingmei; Yang, Shi; Yang, Hao; Liu, Yang; Liu, Yun; Hai, Yanan; Chen, Zheng; Guo, Ying; Gong, Yuehua; Gao, Wei-Qiang; Li, Zheng; He, Zuping

2014-06-01

Infertility is a major and largely incurable disease caused by disruption and loss of germ cells. It affects 10-15% of couples, and male factor accounts for half of the cases. To obtain human male germ cells 'especially functional spermatids' is essential for treating male infertility. Currently, much progress has been made on generating male germ cells, including spermatogonia, spermatocytes, and spermatids, from various types of stem cells. These germ cells can also be used in investigation of the pathology of male infertility. In this review, we focused on advances on obtaining male differentiated germ cells from different kinds of stem cells, with an emphasis on the embryonic stem (ES) cells, the induced pluripotent stem (iPS) cells, and spermatogonial stem cells (SSCs). We illustrated the generation of male differentiated germ cells from ES cells, iPS cells and SSCs, and we summarized the phenotype for these stem cells, spermatocytes and spermatids. Moreover, we address the differentiation potentials of ES cells, iPS cells and SSCs. We also highlight the advantages, disadvantages and concerns on derivation of the differentiated male germ cells from several types of stem cells. The ability of generating mature and functional male gametes from stem cells could enable us to understand the precise etiology of male infertility and offer an invaluable source of autologous male gametes for treating male infertility of azoospermia patients. © 2014 Society for Reproduction and Fertility.

Pathogenesis of germ cell neoplasia in testicular dysgenesis and disorders of sex development

DEFF Research Database (Denmark)

Jørgensen, Anne; Lindhardt Johansen, Marie; Juul, Anders

2015-01-01

in individuals with 46,XY DSD. We summarise knowledge concerning development and sex differentiation of human gonads, with focus on sex-dimorphic steps of germ cell maturation, including meiosis. We also briefly outline the histopathology of germ cell neoplasia in situ (GCNIS) and gonadoblastoma (GDB), which......Development of human gonads is a sex-dimorphic process which evolved to produce sex-specific types of germ cells. The process of gonadal sex differentiation is directed by the action of the somatic cells and ultimately results in germ cells differentiating to become functional gametes through...

File list: InP.Gon.10.AllAg.Testicular_germ_cells [Chip-atlas[Archive

Lifescience Database Archive (English)

Full Text Available InP.Gon.10.AllAg.Testicular_germ_cells mm9 Input control Gonad Testicular germ cell.../dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/InP.Gon.10.AllAg.Testicular_germ_cells.bed ...

Investigating assumptions of crown archetypes for modelling LiDAR returns

NARCIS (Netherlands)

Calders, K.; Lewis, P.; Disney, M.; Verbesselt, J.; Herold, M.

2013-01-01

LiDAR has the potential to derive canopy structural information such as tree height and leaf area index (LAI), via models of the LiDAR signal. Such models often make assumptions regarding crown shape to simplify parameter retrieval and crown archetypes are typically assumed to contain a turbid

Human iPS Cell-Derived Germ Cells: Current Status and Clinical Potential

Directory of Open Access Journals (Sweden)

Tetsuya Ishii

2014-10-01

Full Text Available Recently, fertile spermatozoa and oocytes were generated from mouse induced pluripotent (iPS cells using a combined in vitro and in vivo induction system. With regard to germ cell induction from human iPS cells, progress has been made particularly in the male germline, demonstrating in vitro generation of haploid, round spermatids. Although iPS-derived germ cells are expected to be developed to yield a form of assisted reproductive technology (ART that can address unmet reproductive needs, genetic and/or epigenetic instabilities abound in iPS cell generation and germ cell induction. In addition, there is still room to improve the induction protocol in the female germline. However, rapid advances in stem cell research are likely to make such obstacles surmountable, potentially translating induced germ cells into the clinical setting in the immediate future. This review examines the current status of the induction of germ cells from human iPS cells and discusses the clinical potential, as well as future directions.

Sexual dimorphic expression of dnd in germ cells during sex reversal and its requirement for primordial germ cell survival in protogynous hermaphroditic grouper.

Science.gov (United States)

Sun, Zhi-Hui; Zhou, Li; Li, Zhi; Liu, Xiao-Chun; Li, Shui-Sheng; Wang, Yang; Gui, Jian-Fang

2017-06-01

Dead end (dnd), vertebrate-specific germ cell marker, had been demonstrated to be essential for primordial germ cell (PGC) migration and survival, and the link between PGC number and sex change had been revealed in some teleost species, but little is known about dnd in hermaphroditic vertebrates. In the present study, a protogynous hermaphroditic orange-spotted grouper (Epinephelus coioides) dnd homologue (Ecdnd) was identified and characterized. Quantitative real-time PCR and in situ hybridization analysis revealed a dynamic and sexually dimorphic expression pattern in PGCs and germ cells of gonads. During sex changing, the Ecdnd transcript sharply increased in early transitional gonad, reached the highest level at late transitional gonad stage, and decreased after testis maturation. Visualization of zebrafish PGCs by injecting with RFP-Ecdnd-3'UTR RNA and GFP-zfnanos3-3'UTR RNA confirmed importance of Ecdnd 3'UTR for the PGC distribution. In addition, knockdown of EcDnd by using antisense morpholinos (MO) caused the ablation of PGCs in orange-spotted grouper. Therefore, the current data indicate that Ecdnd is essential for PGCs survival and may serve as a useful germ cell marker during gametogenesis in hermaphroditic grouper. Copyright © 2017 Elsevier Inc. All rights reserved.

Modeling marbled murrelet (Brachyramphus marmoratus) habitat using LiDAR-derived canopy data

Science.gov (United States)

Hagar, Joan C.; Eskelson, Bianca N.I.; Haggerty, Patricia K.; Nelson, S. Kim; Vesely, David G.

2014-01-01

LiDAR (Light Detection And Ranging) is an emerging remote-sensing tool that can provide fine-scale data describing vertical complexity of vegetation relevant to species that are responsive to forest structure. We used LiDAR data to estimate occupancy probability for the federally threatened marbled murrelet (Brachyramphus marmoratus) in the Oregon Coast Range of the United States. Our goal was to address the need identified in the Recovery Plan for a more accurate estimate of the availability of nesting habitat by developing occupancy maps based on refined measures of nest-strand structure. We used murrelet occupancy data collected by the Bureau of Land Management Coos Bay District, and canopy metrics calculated from discrete return airborne LiDAR data, to fit a logistic regression model predicting the probability of occupancy. Our final model for stand-level occupancy included distance to coast, and 5 LiDAR-derived variables describing canopy structure. With an area under the curve value (AUC) of 0.74, this model had acceptable discrimination and fair agreement (Cohen's κ = 0.24), especially considering that all sites in our sample were regarded by managers as potential habitat. The LiDAR model provided better discrimination between occupied and unoccupied sites than did a model using variables derived from Gradient Nearest Neighbor maps that were previously reported as important predictors of murrelet occupancy (AUC = 0.64, κ = 0.12). We also evaluated LiDAR metrics at 11 known murrelet nest sites. Two LiDAR-derived variables accurately discriminated nest sites from random sites (average AUC = 0.91). LiDAR provided a means of quantifying 3-dimensional canopy structure with variables that are ecologically relevant to murrelet nesting habitat, and have not been as accurately quantified by other mensuration methods.

The ethics of germ line gene manipulation--a five dimensional debate.

Science.gov (United States)

Carter, Lucy

2002-10-01

Contributors to the debate surrounding the ethics of germ line gene manipulation have by and large concentrated their efforts on discussions of the potential risks that are associated with the use of this technology. Many international advisory committees have ruled out the acceptability of germ line gene manipulation at least for the time being. The purpose of this work is to generate much needed discussion on the many other ethical issues concerning the implementation of not only germ line gene manipulation but also other related biotechnologies. In this paper I systematically investigate and analyse the most salient issues put forward by proponents and opponents alike. I argue that if germ line manipulation proves to be a safe and effective procedure, then the principle of beneficence imposes on the medical profession a moral duty to pursue the technology.

A multiscale curvature algorithm for classifying discrete return LiDAR in forested environments

Science.gov (United States)

Jeffrey S. Evans; Andrew T. Hudak

2007-01-01

One prerequisite to the use of light detection and ranging (LiDAR) across disciplines is differentiating ground from nonground returns. The objective was to automatically and objectively classify points within unclassified LiDAR point clouds, with few model parameters and minimal postprocessing. Presented is an automated method for classifying LiDAR returns as ground...

The Ovary of Tubifex tubifex (Clitellata, Naididae, Tubificinae Is Composed of One, Huge Germ-Line Cyst that Is Enriched with Cytoskeletal Components.

Directory of Open Access Journals (Sweden)

Anna Z Urbisz

Full Text Available Recent studies on the ovary organization and oogenesis in Tubificinae have revealed that their ovaries are small polarized structures that are composed of germ cells in subsequent stages of oogenesis that are associated with somatic cells. In syncytial cysts, as a rule, each germ cell is connected to the central cytoplasmic mass, the cytophore, via only one stable intercellular bridge (ring canal. In this paper we present detailed data about the composition of germ-line cysts in Tubifex tubifex with special emphasis on the occurrence and distribution of the cytoskeletal elements. Using fixed material and live cell imaging techniques, we found that the entire ovary of T. tubifex is composed of only one, huge multicellular germ-line cyst, which may contain up to 2,600 cells. Its architecture is broadly similar to the cysts that are found in other clitellate annelids, i.e. a common, anuclear cytoplasmic mass in the center of the cyst and germ cells that are connected to it via intercellular bridges. The cytophore in the T. tubifex cyst extends along the long axis of the ovary in the form of elongated and branched cytoplasmic strands. Rhodamine-coupled phalloidin staining revealed that the prominent strands of actin filaments occur inside the cytophore. Similar to the cytophore, F-actin strands are branched and they are especially well developed in the middle and outermost parts of the ovary. Microfilaments are also present in the ring canals that connect the germ cells with the cytophore in the narrow end of the ovary. Using TubulinTracker, we found that the microtubules form a prominent network of loosely and evenly distributed tubules inside the cytophore as well as in every germ cell. The well-developed cytoskeletal elements in T. tubifex ovary seem to ensure the integrity of such a huge germ-line cyst of complex (germ cells-ring canals-cytophore organization. A comparison between the cysts that are described here and other well-known female

Origin of pluripotent germ cell tumours: the role of microenvironment during embryonic development

DEFF Research Database (Denmark)

Kristensen, David Møbjerg; Sonne, Si Brask; Ottesen, Anne Marie

2008-01-01

into virtually any type of tissue and form teratomas (non-seminomas). CIS cells display a close phenotypic similarity to fetal germ cells (primordial germ cells or gonocytes) suggesting an origin due to a developmental delay or arrest of differentiation of early germ cells. The pluripotency of these neoplasms...... in several tissue specific stem cells, such as TFAP2C (AP-2gamma) or KIT. CIS and seminomas highly express a number of pre-meiotic germ cell specific genes, which are down-regulated during development to non-seminomas, while the expression of other embryonic markers, such as SOX2, is up...

Germ-line gene therapy and the medical imperative.

Science.gov (United States)

Munson, Ronald; Davis, Lawrence H

1992-06-01

Somatic cell gene therapy has yielded promising results. If germ cell gene therapy can be developed, the promise is even greater: hundreds of genetic diseases might be virtually eliminated. But some claim the procedure is morally unacceptable. We thoroughly and sympathetically examine several possible reasons for this claim but find them inadequate. There is no moral reason, then, not to develop and employ germ-line gene therapy. Taking the offensive, we argue next that medicine has a prima facie moral obligation to do so.

Carcinoma in situ testis displays permissive chromatin modifications similar to immature foetal germ cells

DEFF Research Database (Denmark)

Almstrup, K; Nielsen, J E; Mlynarska, O

2010-01-01

The majority of testicular germ cell cancers develop through a pre-invasive carcinoma in situ (CIS) stage. The CIS cell is a neoplastic counterpart of foetal germ cells. During their development, foetal germ cells undergo extensive and essential epigenetic modifications, but little is known about...

Cold/menthol TRPM8 receptors initiate the cold-shock response and protect germ cells from cold-shock-induced oxidation.

Science.gov (United States)

Borowiec, Anne-Sophie; Sion, Benoit; Chalmel, Frédéric; D Rolland, Antoine; Lemonnier, Loïc; De Clerck, Tatiana; Bokhobza, Alexandre; Derouiche, Sandra; Dewailly, Etienne; Slomianny, Christian; Mauduit, Claire; Benahmed, Mohamed; Roudbaraki, Morad; Jégou, Bernard; Prevarskaya, Natalia; Bidaux, Gabriel

2016-09-01

Testes of most male mammals present the particularity of being externalized from the body and are consequently slightly cooler than core body temperature (4-8°C below). Although, hypothermia of the testis is known to increase germ cells apoptosis, little is known about the underlying molecular mechanisms, including cold sensors, transduction pathways, and apoptosis triggers. In this study, using a functional knockout mouse model of the cold and menthol receptors, dubbed transient receptor potential melastatine 8 (TRPM8) channels, we found that TRPM8 initiated the cold-shock response by differentially modulating cold- and heat-shock proteins. Besides, apoptosis of germ cells increased in proportion to the cooling level in control mice but was independent of temperature in knockout mice. We also observed that the rate of germ cell death correlated positively with the reactive oxygen species level and negatively with the expression of the detoxifying enzymes. This result suggests that the TRPM8 sensor is a key determinant of germ cell fate under hypothermic stimulation.-Borowiec, A.-S., Sion, B., Chalmel, F., Rolland, A. D., Lemonnier, L., De Clerck, T., Bokhobza, A., Derouiche, S., Dewailly, E., Slomianny, C., Mauduit, C., Benahmed, M., Roudbaraki, M., Jégou, B., Prevarskaya, N., Bidaux, G. Cold/menthol TRPM8 receptors initiate the cold-shock response and protect germ cells from cold-shock-induced oxidation. © The Author(s).

Regulation of mitosis-meiosis transition by the ubiquitin ligase β-TrCP in male germ cells.

Science.gov (United States)

Nakagawa, Tadashi; Zhang, Teng; Kushi, Ryo; Nakano, Seiji; Endo, Takahiro; Nakagawa, Makiko; Yanagihara, Noriko; Zarkower, David; Nakayama, Keiko

2017-11-15

The mitosis-meiosis transition is essential for spermatogenesis. Specific and timely downregulation of the transcription factor DMRT1, and consequent induction of Stra8 expression, is required for this process in mammals, but the molecular mechanism has remained unclear. Here, we show that β-TrCP, the substrate recognition component of an E3 ubiquitin ligase complex, targets DMRT1 for degradation and thereby controls the mitosis-meiosis transition in mouse male germ cells. Conditional inactivation of β-TrCP2 in male germ cells of β-TrCP1 knockout mice resulted in sterility due to a lack of mature sperm. The β-TrCP-deficient male germ cells did not enter meiosis, but instead underwent apoptosis. The induction of Stra8 expression was also attenuated in association with the accumulation of DMRT1 at the Stra8 promoter in β-TrCP-deficient testes. DMRT1 contains a consensus β-TrCP degron sequence that was found to bind β-TrCP. Overexpression of β-TrCP induced the ubiquitylation and degradation of DMRT1. Heterozygous deletion of Dmrt1 in β-TrCP-deficient spermatogonia increased meiotic cells with a concomitant reduction of apoptosis. Collectively, our data indicate that β-TrCP regulates the transition from mitosis to meiosis in male germ cells by targeting DMRT1 for degradation. © 2017. Published by The Company of Biologists Ltd.

47 CFR 25.401 - Satellite DARS applications subject to competitive bidding.

Science.gov (United States)

2010-10-01

... 47 Telecommunication 2 2010-10-01 2010-10-01 false Satellite DARS applications subject to competitive bidding. 25.401 Section 25.401 Telecommunication FEDERAL COMMUNICATIONS COMMISSION (CONTINUED) COMMON CARRIER SERVICES SATELLITE COMMUNICATIONS Competitive Bidding Procedures for DARS § 25.401...

Germ line mechanics – and unfinished business

Science.gov (United States)

Wessel, Gary M.

2016-01-01

Primordial germ cells are usually made early in the development of an organism. These are the mother of all stem cells that are necessary for propagation of the species, yet use highly diverse mechanisms between organisms. How they are specified, and when and where they form, are central to developmental biology. Using diverse organisms to study this development is illuminating for understanding the mechanics these cells use in this essential function, and for identifying the breadth of evolutionary changes that have occurred between species. This essay emphasizes how echinoderms may contribute to the patch-work quilt of our understanding of germ line formation during embryogenesis. PMID:26970000

Effects of Soy-Germ Protein on Catalase Activity of Plasma and Erythocyte of Metabolic Syndrome Women

Directory of Open Access Journals (Sweden)

HERY WINARSI

2015-01-01

Full Text Available Oxidative stress always accompany patients with metabolic syndrome (MS. Several researchers reported that soy-protein is able to decrease oxidative stress level. However, there is no report so far about soy-germ protein in relation to its potential to the decrease oxidative stress level of MS patients. The aim of this study was to explore the potential of soy-germ protein on activity of catalase enzyme in blood's plasma as well as erythrocytes of MS patients. Double-blind randomized clinical trial was used as an experimental study. Thirty respondents were included in this study with MS, normal level blood sugar, low-HDL cholesterol but high in triglyceride, 40-65 years old, Body Mass Index > 25 kg/m2, live in Purwokerto and agreed to sign the informed consent. They were randomly grouped into 3 different groups, 10 each: Group I, was given special milk that contains soy-germ protein and Zn; Group II, soy-germ protein, while Group III was placebo; for two consecutive months. Data were taken from blood samples in 3 different periods i.e. 0, 1, and 2 months after treatment. Two months after treatment, there was an increase from 5.36 to 20.17 IU/mg (P = 0.028 in activity of catalase enzyme in blood's plasma respondents who consumed milk containing soy-germ protein with or without Zn. A similar trend of catalase activity, but at a lower level, was also noticed in erythrocyte; which increased from 88.31 to 201.11 IU/mg (P = 0.013. The increase in activity of catalase enzyme in blood's plasma was 2.2 times higher than that in erythrocytes.

Hawaii DAR Dealer Reporting System Data

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — In 2000 January, the Hawaii Division of Aquatic Resources (DAR) implemented a computerized data processing system for fish dealer data collected state-wide. Hawaii...

Strategies for minimizing sample size for use in airborne LiDAR-based forest inventory

Science.gov (United States)

Junttila, Virpi; Finley, Andrew O.; Bradford, John B.; Kauranne, Tuomo

2013-01-01

Recently airborne Light Detection And Ranging (LiDAR) has emerged as a highly accurate remote sensing modality to be used in operational scale forest inventories. Inventories conducted with the help of LiDAR are most often model-based, i.e. they use variables derived from LiDAR point clouds as the predictive variables that are to be calibrated using field plots. The measurement of the necessary field plots is a time-consuming and statistically sensitive process. Because of this, current practice often presumes hundreds of plots to be collected. But since these plots are only used to calibrate regression models, it should be possible to minimize the number of plots needed by carefully selecting the plots to be measured. In the current study, we compare several systematic and random methods for calibration plot selection, with the specific aim that they be used in LiDAR based regression models for forest parameters, especially above-ground biomass. The primary criteria compared are based on both spatial representativity as well as on their coverage of the variability of the forest features measured. In the former case, it is important also to take into account spatial auto-correlation between the plots. The results indicate that choosing the plots in a way that ensures ample coverage of both spatial and feature space variability improves the performance of the corresponding models, and that adequate coverage of the variability in the feature space is the most important condition that should be met by the set of plots collected.

Automated Tree Crown Delineation and Biomass Estimation from Airborne LiDAR data: A Comparison of Statistical and Machine Learning Methods

Science.gov (United States)

Gleason, C. J.; Im, J.

2011-12-01

Airborne LiDAR remote sensing has been used effectively in assessing forest biomass because of its canopy penetrating effects and its ability to accurately describe the canopy surface. Current research in assessing biomass using airborne LiDAR focuses on either the individual tree as a base unit of study or statistical representations of a small aggregation of trees (i.e., plot level), and both methods usually rely on regression against field data to model the relationship between the LiDAR-derived data (e.g., volume) and biomass. This study estimates biomass for mixed forests and coniferous plantations (Picea Abies) within Heiberg Memorial Forest, Tully, NY, at both the plot and individual tree level. Plots are regularly spaced with a radius of 13m, and field data include diameter at breast height (dbh), tree height, and tree species. Field data collection and LiDAR data acquisition were seasonally coincident and both obtained in August of 2010. Resulting point cloud density was >5pts/m2. LiDAR data were processed to provide a canopy height surface, and a combination of watershed segmentation, active contouring, and genetic algorithm optimization was applied to delineate individual trees from the surface. This updated delineation method was shown to be more accurate than traditional watershed segmentation. Once trees had been delineated, four biomass estimation models were applied and compared: support vector regression (SVR), linear mixed effects regression (LME), random forest (RF), and Cubist regression. Candidate variables to be used in modeling were derived from the LiDAR surface, and include metrics of height, width, and volume per delineated tree footprint. Previously published allometric equations provided field estimates of biomass to inform the regressions and calculate their accuracy via leave-one-out cross validation. This study found that for forests such as found in the study area, aggregation of individual trees to form a plot-based estimate of

The diversity of nanos expression in echinoderm embryos supports different mechanisms in germ cell specification.

Science.gov (United States)

Fresques, Tara; Swartz, Steven Zachary; Juliano, Celina; Morino, Yoshiaki; Kikuchi, Mani; Akasaka, Koji; Wada, Hiroshi; Yajima, Mamiko; Wessel, Gary M

2016-07-01

Specification of the germ cell lineage is required for sexual reproduction in all animals. However, the timing and mechanisms of germ cell specification is remarkably diverse in animal development. Echinoderms, such as sea urchins and sea stars, are excellent model systems to study the molecular and cellular mechanisms that contribute to germ cell specification. In several echinoderm embryos tested, the germ cell factor Vasa accumulates broadly during early development and is restricted after gastrulation to cells that contribute to the germ cell lineage. In the sea urchin, however, the germ cell factor Vasa is restricted to a specific lineage by the 32-cell stage. We therefore hypothesized that the germ cell specification program in the sea urchin/Euechinoid lineage has evolved to an earlier developmental time point. To test this hypothesis we determined the expression pattern of a second germ cell factor, Nanos, in four out of five extant echinoderm clades. Here we find that Nanos mRNA does not accumulate until the blastula stage or later during the development of all other echinoderm embryos except those that belong to the Echinoid lineage. Instead, Nanos is expressed in a restricted domain at the 32-128 cell stage in Echinoid embryos. Our results support the model that the germ cell specification program underwent a heterochronic shift in the Echinoid lineage. A comparison of Echinoid and non-Echinoid germ cell specification mechanisms will contribute to our understanding of how these mechanisms have changed during animal evolution. © 2016 Wiley Periodicals, Inc.

Remote sensing of Sonoran Desert vegetation structure and phenology with ground-based LiDAR

Science.gov (United States)

Sankey, Joel B.; Munson, Seth M.; Webb, Robert H.; Wallace, Cynthia S.A.; Duran, Cesar M.

2015-01-01

Long-term vegetation monitoring efforts have become increasingly important for understanding ecosystem response to global change. Many traditional methods for monitoring can be infrequent and limited in scope. Ground-based LiDAR is one remote sensing method that offers a clear advancement to monitor vegetation dynamics at high spatial and temporal resolution. We determined the effectiveness of LiDAR to detect intra-annual variability in vegetation structure at a long-term Sonoran Desert monitoring plot dominated by cacti, deciduous and evergreen shrubs. Monthly repeat LiDAR scans of perennial plant canopies over the course of one year had high precision. LiDAR measurements of canopy height and area were accurate with respect to total station survey measurements of individual plants. We found an increase in the number of LiDAR vegetation returns following the wet North American Monsoon season. This intra-annual variability in vegetation structure detected by LiDAR was attributable to a drought deciduous shrub Ambrosia deltoidea, whereas the evergreen shrub Larrea tridentata and cactus Opuntia engelmannii had low variability. Benefits of using LiDAR over traditional methods to census desert plants are more rapid, consistent, and cost-effective data acquisition in a high-resolution, 3-dimensional context. We conclude that repeat LiDAR measurements can be an effective method for documenting ecosystem response to desert climatology and drought over short time intervals and at detailed-local spatial scale.

Detailed Hydrographic Feature Extraction from High-Resolution LiDAR Data

Energy Technology Data Exchange (ETDEWEB)

Danny L. Anderson

2012-05-01

Detailed hydrographic feature extraction from high-resolution light detection and ranging (LiDAR) data is investigated. Methods for quantitatively evaluating and comparing such extractions are presented, including the use of sinuosity and longitudinal root-mean-square-error (LRMSE). These metrics are then used to quantitatively compare stream networks in two studies. The first study examines the effect of raster cell size on watershed boundaries and stream networks delineated from LiDAR-derived digital elevation models (DEMs). The study confirmed that, with the greatly increased resolution of LiDAR data, smaller cell sizes generally yielded better stream network delineations, based on sinuosity and LRMSE. The second study demonstrates a new method of delineating a stream directly from LiDAR point clouds, without the intermediate step of deriving a DEM. Direct use of LiDAR point clouds could improve efficiency and accuracy of hydrographic feature extractions. The direct delineation method developed herein and termed “mDn”, is an extension of the D8 method that has been used for several decades with gridded raster data. The method divides the region around a starting point into sectors, using the LiDAR data points within each sector to determine an average slope, and selecting the sector with the greatest downward slope to determine the direction of flow. An mDn delineation was compared with a traditional grid-based delineation, using TauDEM, and other readily available, common stream data sets. Although, the TauDEM delineation yielded a sinuosity that more closely matches the reference, the mDn delineation yielded a sinuosity that was higher than either the TauDEM method or the existing published stream delineations. Furthermore, stream delineation using the mDn method yielded the smallest LRMSE.

The Typology of Female Sex Workers in Dar-es-Salaam ...

African Journals Online (AJOL)

Objective: To establish the categories of female sex workers in Dar es Salaam. Methods: We conducted in depth-interviews with 32 female sex workers (FSWs) in five geographic areas of Dar-es-Salaam known to be the primary residential and working places, three local government leaders in three of the five areas known ...

Forskolin and the meiosis inducing substance synergistically initiate meiosis in fetal male germ cells

DEFF Research Database (Denmark)

Byskov, A G; Fenger, M; Westergaard, L

1993-01-01

We have shown that Meiosis Inducing Substance (MIS) and forskolin synergistically and dose dependently induce meiosis in germ cells of cultured fetal mouse testes. We used a bioassay which consists of fetal mouse testes and ovaries cultured for 6 days. In this study MIS media are spent culture...... are fixed, squashed, and DNA-stained. In these preparations germ cells and somatic cells can be distinguished, and the number of germ cells in the different stages of meiosis is counted as is the number of somatic cells in mitosis. MIS activity is defined to be present in a medium when meiosis is induced...... in male germ cells during culture. We found that MIS media as well as forskolin induced meiosis in fetal male germ cells in a dose-dependent manner. In addition, MIS media and forskolin acted synergistically by inducing meiosis. Female germ cells seem to be unaffected by the various culture media...

Jean Lafitte 2013, 1.0 Meter LiDAR, Classified point cloud

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Light Detection and Ranging (LiDAR) dataset is a survey of the Jean Lafitte,G13PD00214, 1.0 Meter LiDAR Survey Area in south of New Orleans and encompasses 77...

Geotechnical applications of LiDAR pertaining to geomechanical evaluation and hazard identification

Science.gov (United States)

Lato, Matthew J.

Natural hazards related to ground movement that directly affect the safety of motorists and highway infrastructure include, but are not limited to, rockfalls, rockslides, debris flows, and landslides. This thesis specifically deals with the evaluation of rockfall hazards through the evaluation of LiDAR data. Light Detection And Ranging (LiDAR) is an imaging technology that can be used to delineate and evaluate geomechanically-controlled hazards. LiDAR has been adopted to conduct hazard evaluations pertaining to rockfall, rock-avalanches, debris flows, and landslides. Characteristics of LiDAR surveying, such as rapid data acquisition rates, mobile data collection, and high data densities, pose problems to traditional CAD or GIS-based mapping methods. New analyses methods, including tools specifically oriented to geomechanical analyses, are needed. The research completed in this thesis supports development of new methods, including improved survey techniques, innovative software workflows, and processing algorithms to aid in the detection and evaluation of geomechanically controlled rockfall hazards. The scientific research conducted between the years of 2006-2010, as presented in this thesis, are divided into five chapters, each of which has been published by or is under review by an international journal. The five research foci are: (i) geomechanical feature extraction and analysis using LiDAR data in active mining environments; (ii) engineered monitoring of rockfall hazards along transportation corridors: using mobile terrestrial LiDAR; (iii) optimization of LiDAR scanning and processing for automated structural evaluation of discontinuities in rockmasses; (iv) location orientation bias when using static LiDAR data for geomechanical analysis; and (v) evaluating roadside rockmasses for rockfall hazards from LiDAR data: optimizing data collection and processing protocols. The research conducted pertaining to this thesis has direct and significant implications with

Risk and prognostic significance of metachronous contralateral testicular germ cell tumours

NARCIS (Netherlands)

Schaapveld, M.; van den Belt-Dusebout, A. W.; Gietema, J. A.; de Wit, R.; Horenblas, S.; Witjes, J. A.; Hoekstra, H. J.; Kiemeney, L. A. L. M.; Louwman, W. J.; Ouwens, G. M.; Aleman, B. M. P.; van Leeuwen, F. E.

2012-01-01

BACKGROUND: Testicular germ cell tumour (TGCT) patients are at increased risk of developing a contralateral testicular germ cell tumour (CTGCT). It is unclear whether TGCT treatment affects CTGCT risk. METHODS: The risk of developing a metachronous CTGCT (a CTGCT diagnosed >= 6 months after a

Coastal and tidal landform detection from high resolution topobathymetric LiDAR data

Science.gov (United States)

Skovgaard Andersen, Mikkel; Al-Hamdani, Zyad; Steinbacher, Frank; Rolighed Larsen, Laurids; Brandbyge Ernstsen, Verner

2016-04-01

Coastal and tidal environments are valuable ecosystems, which, however, are under pressure in many areas around the world due to globalisation and/or climate change. Detailed mapping of these environments is required in order to manage the coastal zone in a sustainable way. However, historically these transition zones between land and water are difficult or even impossible to map and investigate in high spatial resolution due to the challenging environmental conditions. The new generation of airborne topobathymetric light detection and ranging (LiDAR) potentially enables full-coverage and high-resolution mapping of these land-water transition zones. We have carried out topobathymetric LiDAR surveys in the Knudedyb tidal inlet system, a coastal environment in the Danish Wadden Sea which is part of the Wadden Sea National Park and UNESCO World Heritage. Detailed digital elevation models (DEMs) with a grid cell size of 0.5 m x 0.5 m were generated from the LiDAR point cloud with a mean point density in the order of 20 points/m2. The DEM was analysed morphometrically using a modification of the tool Benthic Terrain Modeler (BTM) developed by Wright et al. (2005). Initially, stage (the elevation in relation to tidal range) was used to divide the area of investigation into the different tidal zones, i.e. subtidal, intertidal and supratidal. Subsequently, morphometric units were identified and characterised by a combination of statistical neighbourhood analysis with varying window sizes (using the Bathymetric Positioning Index (BPI) from the BTM, moving average and standard deviation), slope parameters and area/perimeter ratios. Finally, these morphometric units were classified into six different types of landforms based on their stage and morphometric characteristics, i.e. either subtidal channel, intertidal flat, intertidal creek, linear bar, swash bar or beach dune. We hereby demonstrate the potential of using airborne topobathymetric LiDAR for seamless mapping of land

KML-Based Access and Visualization of High Resolution LiDAR Topography

Science.gov (United States)

Crosby, C. J.; Blair, J. L.; Nandigam, V.; Memon, A.; Baru, C.; Arrowsmith, J. R.

2008-12-01

Over the past decade, there has been dramatic growth in the acquisition of LiDAR (Light Detection And Ranging) high-resolution topographic data for earth science studies. Capable of providing digital elevation models (DEMs) more than an order of magnitude higher resolution than those currently available, LiDAR data allow earth scientists to study the processes that contribute to landscape evolution at resolutions not previously possible yet essential for their appropriate representation. These datasets also have significant implications for earth science education and outreach because they provide an accurate representation of landforms and geologic hazards. Unfortunately, the massive volume of data produced by LiDAR mapping technology can be a barrier to their use. To make these data available to a larger user community, we have been exploring the use of Keyhole Markup Language (KML) and Google Earth to provide access to LiDAR data products and visualizations. LiDAR digital elevation models are typically delivered in a tiled format that lends itself well to a KML-based distribution system. For LiDAR datasets hosted in the GEON OpenTopography Portal (www.opentopography.org) we have developed KML files that show the extent of available LiDAR DEMs and provide direct access to the data products. Users interact with these KML files to explore the extent of the available data and are able to select DEMs that correspond to their area of interest. Selection of a tile loads a download that the user can then save locally for analysis in their software of choice. The GEON topography system also has tools available that allow users to generate custom DEMs from LiDAR point cloud data. This system is powerful because it enables users to access massive volumes of raw LiDAR data and to produce DEM products that are optimized to their science applications. We have developed a web service that converts the custom DEM models produced by the system to a hillshade that is delivered to

Developmental plasticity of bacterial colonies and consortia in germ-free and gnotobiotic settings

Directory of Open Access Journals (Sweden)

Pátková Irena

2012-08-01

Full Text Available Abstract Background Bacteria grown on semi-solid media can build two types of multicellular structures, depending on the circumstances. Bodies (colonies arise when a single clone is grown axenically (germ-free, whereas multispecies chimeric consortia contain monoclonal microcolonies of participants. Growth of an axenic colony, mutual interactions of colonies, and negotiation of the morphospace in consortial ecosystems are results of intricate regulatory and metabolic networks. Multicellular structures developed by Serratia sp. are characteristically shaped and colored, forming patterns that reflect their growth conditions (in particular medium composition and the presence of other bacteria. Results Building on our previous work, we developed a model system for studying ontogeny of multicellular bacterial structures formed by five Serratia sp. morphotypes of two species grown in either "germ-free" or "gnotobiotic" settings (i.e. in the presence of bacteria of other conspecific morphotype, other Serratia species, or E. coli. Monoclonal bodies show regular and reproducible macroscopic appearance of the colony, as well as microscopic pattern of its growing margin. Standard development can be modified in a characteristic and reproducible manner in close vicinity of other bacterial structures (or in the presence of their products. Encounters of colonies with neighbors of a different morphotype or species reveal relationships of dominance, cooperation, or submission; multiple interactions can be summarized in "rock – paper – scissors" network of interrelationships. Chimerical (mixed plantings consisting of two morphotypes usually produced a “consortium” whose structure is consistent with the model derived from interaction patterns observed in colonies. Conclusions Our results suggest that development of a bacterial colony can be considered analogous to embryogenesis in animals, plants, or fungi: to proceed, early stages require thorough

Germ cells are not required to establish the female pathway in mouse fetal gonads.

Directory of Open Access Journals (Sweden)

Danielle M Maatouk

Full Text Available The fetal gonad is composed of a mixture of somatic cell lineages and germ cells. The fate of the gonad, male or female, is determined by a population of somatic cells that differentiate into Sertoli or granulosa cells and direct testis or ovary development. It is well established that germ cells are not required for the establishment or maintenance of Sertoli cells or testis cords in the male gonad. However, in the agametic ovary, follicles do not form suggesting that germ cells may influence granulosa cell development. Prior investigations of ovaries in which pre-meiotic germ cells were ablated during fetal life reported no histological changes during stages prior to birth. However, whether granulosa cells underwent normal molecular differentiation was not investigated. In cases where germ cell loss occurred secondary to other mutations, transdifferentiation of granulosa cells towards a Sertoli cell fate was observed, raising questions about whether germ cells play an active role in establishing or maintaining the fate of granulosa cells. We developed a group of molecular markers associated with ovarian development, and show here that the loss of pre-meiotic germ cells does not disrupt the somatic ovarian differentiation program during fetal life, or cause transdifferentiation as defined by expression of Sertoli markers. Since we do not find defects in the ovarian somatic program, the subsequent failure to form follicles at perinatal stages is likely attributable to the absence of germ cells rather than to defects in the somatic cells.

Germ Cells Are Not Required to Establish the Female Pathway in Mouse Fetal Gonads

Science.gov (United States)

Maatouk, Danielle M.; Mork, Lindsey; Hinson, Ashley; Kobayashi, Akio; McMahon, Andrew P.; Capel, Blanche

2012-01-01

The fetal gonad is composed of a mixture of somatic cell lineages and germ cells. The fate of the gonad, male or female, is determined by a population of somatic cells that differentiate into Sertoli or granulosa cells and direct testis or ovary development. It is well established that germ cells are not required for the establishment or maintenance of Sertoli cells or testis cords in the male gonad. However, in the agametic ovary, follicles do not form suggesting that germ cells may influence granulosa cell development. Prior investigations of ovaries in which pre-meiotic germ cells were ablated during fetal life reported no histological changes during stages prior to birth. However, whether granulosa cells underwent normal molecular differentiation was not investigated. In cases where germ cell loss occurred secondary to other mutations, transdifferentiation of granulosa cells towards a Sertoli cell fate was observed, raising questions about whether germ cells play an active role in establishing or maintaining the fate of granulosa cells. We developed a group of molecular markers associated with ovarian development, and show here that the loss of pre-meiotic germ cells does not disrupt the somatic ovarian differentiation program during fetal life, or cause transdifferentiation as defined by expression of Sertoli markers. Since we do not find defects in the ovarian somatic program, the subsequent failure to form follicles at perinatal stages is likely attributable to the absence of germ cells rather than to defects in the somatic cells. PMID:23091613

Advances in animal ecology from 3D ecosystem mapping with LiDAR

Science.gov (United States)

Davies, A.; Asner, G. P.

2015-12-01

The advent and recent advances of Light Detection and Ranging (LiDAR) have enabled accurate measurement of 3D ecosystem structure. Although the use of LiDAR data is widespread in vegetation science, it has only recently (3D ecosystem structure for animals. We reviewed the studies to date that have used LiDAR in animal ecology, synthesising the insights gained. Structural heterogeneity is most conducive to increased animal richness and abundance, and increased complexity of vertical vegetation structure is more positively influential than traditionally measured canopy cover, which produces mixed results. However, different taxonomic groups interact with a variety of 3D canopy traits and some groups with 3D topography. LiDAR technology can be applied to animal ecology studies in a wide variety of environments to answer an impressive array of questions. Drawing on case studies from vastly different groups, termites and lions, we further demonstrate the applicability of LiDAR and highlight new understanding, ranging from habitat preference to predator-prey interactions, that would not have been possible from studies restricted to field based methods. We conclude with discussion of how future studies will benefit by using LiDAR to consider 3D habitat effects in a wider variety of ecosystems and with more taxa to develop a better understanding of animal dynamics.

Effects of chemical and physical agents on recombination events in cells of the germ line of male and female Drosophila melanogaster.

Science.gov (United States)

Würgler, F E

1991-01-01

Genotoxic agents can induce mutations as well as recombination in the genetic material. The fruit fly Drosophila melanogaster was one of the first assay systems to test physical and chemical agents for recombinogenic effects. Such effects can be observed in cells of the germ line as well as in somatic cells. At present information is available on 54 agents, among them 48 chemicals that have been tested in cells of the germ line of males and/or females. Effects on meiotic recombination in female germ cells cannot simply be classified as positive or negative since for a number of agents, depending on the chromosome region studied, recombination frequencies may be increased, unaffected or decreased. The male germ line of D. melanogaster represents a unique situation because meiotic recombination does not occur. Among 25 agents tested in male germ cells 24 did induce male recombination, among them alkylating, intercalating and cross-linking agents, direct-acting ones as well as compounds needing metabolic activation. With several compounds the frequency of induced recombination is highest in the heterochromatic regions near the centromeres. In brood pattern analyses, e.g., after exposure of adult males to ionizing radiation, the first appearance of crossover progeny is indicative of the sampling of exposed spermatocytes. In premeiotic cells of the male and the female germ line mitotic recombination can occur. Upon clonal expansion of the recombinant cells, clusters of identical crossovers can be observed.

Primary Germ Cell Tumors of the Mediastinum: 10 Years of Experience in a Tertiary Teaching Hospital

Directory of Open Access Journals (Sweden)

Chih-Jen Yang

2005-09-01

Full Text Available Germ cell tumors occur mostly in the gonad. Extragonadal germ cell tumors are rare, and most occur in the retroperitoneum and mediastinum. Primary mediastinal germ cell tumors are often found in the anterior portion of the mediastinum and include teratomas and non-teratomatous tumors. Non-teratomatous tumors include seminomas and malignant non-seminomatous germ cell tumors (MNSGCTs. MNSGCTs include yolk sac tumors, choriocarcinomas, embryonal carcinomas, and mixed type germ cell tumors. Teratomas are the most common germ cell tumors of the mediastinum, and seminomas are the most common non-teratomatous germ cell tumors of the mediastinum. Cases of primary mediastinal MNSGCT reported in the literature are rare. In this report, we review all primary mediastinal germ cell tumors from a 10-year period at the Chung-Ho Memorial Hospital of Kaohsiung Medical University. A total of 14 cases were reviewed, including 11 patients with mature teratomas, two with yolk sac tumors, and one with seminoma. We discuss the differences in clinical presentation, histopathologic characteristics, treatment, and prognosis.

Analysis of Maize Seed Germs by Photoacoustic Microscopy and Photopyroelectric Technique

Science.gov (United States)

Pacheco, A. Domínguez; Aguilar, C. Hernández; Cruz-Orea, A.

2013-05-01

A knowledge about thermal parameters of structural components of maize seed is of great relevance in the seed technology practice. The objective of the present study was to determine the thermal effusivity of germs of maize ( Zea mays L.) of different genotypes by means of the photopyroelectric technique (PPE) in the inverse configuration and obtaining the thermal imaging of these samples by photoacoustic microscopy (PAM). Germs from crystalline maize (white pigment), semi-crystalline maize (yellow pigment), and floury maize (blue pigment) were used in this investigation. The results show differences between germs of maize seeds mainly in the values of their thermal effusivities. The thermal images showed minimum inhomogeneity of these seed germs. Characterizations of thermal parameters in seeds are important in agriculture and food production and could be particularly useful to define their quality and determine their utility. PPE and PAM can be considered as potential diagnostic tools for the characterization of agriculture seeds.

Premeiotic germ cell defect in seminiferous tubules of Atm-null testis

International Nuclear Information System (INIS)

Takubo, Keiyo; Hirao, Atsushi; Ohmura, Masako; Azuma, Masaki; Arai, Fumio; Nagamatsu, Go; Suda, Toshio

2006-01-01

Lifelong spermatogenesis is maintained by coordinated sequential processes including self-renewal of stem cells, proliferation of spermatogonial cells, meiotic division, and spermiogenesis. It has been shown that ataxia telangiectasia-mutated (ATM) is required for meiotic division of the seminiferous tubules. Here, we show that, in addition to its role in meiosis, ATM has a pivotal role in premeiotic germ cell maintenance. ATM is activated in premeiotic spermatogonial cells and the Atm-null testis shows progressive degeneration. In Atm-null testicular cells, differing from bone marrow cells of Atm-null mice, reactive oxygen species-mediated p16 Ink4a activation does not occur in Atm-null premeiotic germ cells, which suggests the involvement of different signaling pathways from bone marrow defects. Although Atm-null bone marrow undergoes p16 Ink4a -mediated cellular senescence program, Atm-null premeiotic germ cells exhibited cell cycle arrest and apoptotic elimination of premeiotic germ cells, which is different from p16 Ink4a -mediated senescence

Control over the morphology and segregation of Zebrafish germ cell granules during embryonic development

Directory of Open Access Journals (Sweden)

Nakkrasae La-Iad

2008-05-01

Full Text Available Abstract Background Zebrafish germ cells contain granular-like structures, organized around the cell nucleus. These structures share common features with polar granules in Drosophila, germinal granules in Xenopus and chromatoid bodies in mice germ cells, such as the localization of the zebrafish Vasa, Piwi and Nanos proteins, among others. Little is known about the structure of these granules as well as their segregation in mitosis during early germ-cell development. Results Using transgenic fish expressing a fluorescently labeled novel component of Zebrafish germ cell granules termed Granulito, we followed the morphology and distribution of the granules. We show that whereas these granules initially exhibit a wide size variation, by the end of the first day of development they become a homogeneous population of medium size granules. We investigated this resizing event and demonstrated the role of microtubules and the minus-end microtubule dependent motor protein Dynein in the process. Last, we show that the function of the germ cell granule resident protein the Tudor domain containing protein-7 (Tdrd7 is required for determination of granule morphology and number. Conclusion Our results suggest that Zebrafish germ cell granules undergo a transformation process, which involves germ cell specific proteins as well as the microtubular network.

2011 U.S. Geological Survey (USGS) Topographic LiDAR: Louisiana Region 1

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — TASK NAME: Louisiana Region 1 LiDAR ARRA Task Order LiDAR Data Acquisition and Processing Production Task- Vermillion, Iberia, St. Mary, Terrebonne, and Lafourche...

2011 U.S. Geological Survey (USGS) Topographic LiDAR: Louisiana Region 2

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — TASK NAME: Louisiana Region 2 LiDAR ARRA Task Order LiDAR Data Acquisition and Processing Production Task- Orleans, Plaquemines, St. Bernard, St. Tammany Parishes,...

International germ cell consensus classification : A prognostic factor-erased staging system for metastatic germ cell cancers

NARCIS (Netherlands)

Mead, GM; Stenning, SP; Cook, P; Fossa, SD; Horwich, A; Kaye, SB; Oliver, RTD; deMulder, PHM; deWit, R; Stoter, G; Sylvester, RJ; Bajorin, DF; Bosl, GJ; Mazumdar, M; Nichols, CR; Amato, R; Pizzocaro, G; Droz, JP; Kramar, A; Daugaard, G; CortesFunes, H; PazAres, L; Levi, JA; Colls, BM; Harvey, VJ; Coppin, C

Purpose: Cisplatin-containing chemotherapy has dramatically improved the outlook for patients with metastatic germ cell tumors (GCT), and overall cure rates now exceed 80%. To make appropriate risk-based decisions about therapy and to facilitate collaborative trials, a simple prognostic factor-based

Immature germ cells in semen - correlation with total sperm count and sperm motility

Directory of Open Access Journals (Sweden)

Priya S Patil

2013-01-01

Conclusions: Round cells in semen can be differentiated into immature germ cells and leucocytes using simple staining methods. The differential counts mentioned in a semen report give valuable and clinically relevant information. In this study, we observed a negative correlation between total count and immature germ cells, as well as sperm motility and shedding of immature germ cells. The latter was statistically significant with a P value 0.000.

"Mixed germ cell testicular tumor" in an adult female

Directory of Open Access Journals (Sweden)

Udasimath Shivakumarswamy

2012-01-01

Full Text Available The androgen insensitivity (testicular feminization syndrome was described by Morris in phenotypic females with 46XY karyotype, presenting with primary amenorrhea, adequate breast development, and absent or scanty pubic or axillary hair. Gonads consist usually of seminiferous tubules without spermatogenesis. These patients have a 5-10% risk of developing germ cell tumors, usually after the complete development of secondary female sexual characteristics. We hereby report a case considered as a female with married life of 15 years, who was operated for severe abdominal pain. Phenotype characters were that of female. Microscopic examination of the tumor from the abdomen revealed germinoma and yolk sac tumor with adjacent seminiferous tubules. Karyotyping showed 46XY. Final diagnosis of malignant mixed germ cell tumor in androgen insensitivity syndrome was made. Surveillance may be the most appropriate option when these conditions are initially diagnosed in adulthood to prevent development of germ cell tumors.

[Investigation of the effect of oil and flour from wheat germ meal on lipid metabolism of students and teachers of the university].

Science.gov (United States)

Rodionova, N S; Isaev, V A; Vishnyakov, A B; Popov, E S; Safonova, N V; Srorublyovtsev, S A

2016-01-01

The results of investigation of alimentary correction of lipid metabolism under the admin­istration of processed products from wheat germ - oil (with the content of policosanol at least 1.5-8.0 mg/100 g, vitamin E - 180-200 mg/100 g, PUFA - 60-65%) and cake flour (with the content of protein - 30-35%, oil with analogue composition -5-7%, digestible carbohydrates - 45-47%, fiber - 18-26%, vitamins B1, B3, B6, B9, E, PP, minerals and trace elements - Zn, Mn, K, Fe, Se, P) are presented. Volunteers among teachers and students of the university aged 16 to 65 years daily consumed wheat germ oil obtained by cold pressing in an amount of 3.5 g, regardless of the meal within 30 days. Then a part of them (30 persons) consumed daily 50 g of oil cake obtained after pressing oil, which provided the intake of the same amount of oil (3.5 g). Lipid metabolism param­eters were monitored in experiment participants before receiving the processed products of wheat germ, after germ meal intake and beyond 30 and 60 days after consumption of wheat germ. Data analysis was carried out on three age groups: 16-24, 25-44 and 45- 65 years. All participants of the experiment showed a reduction in total cholesterol level by 6-8%, increasing the concentration of HDL cholesterol by 3-24%, lowering LDL cholesterol concentrations by 4-21%, reduction of triglyceride concentration by 12-24%, a positive correction of atherogenic factor values by for 10-25%. Prolonged action of the investigated foods was established: lipid metabolism parameters in the tested group were better than in the control group after 30 days of intake discontinuation of oil or wheat germ flour, the positive adjustment effect disappeared 60 days after consuming the products. The findings demonstrate a positive effect on the normalization of lipid metabolism when cake flour of wheat germ was administered in daily food ration, similar to the effect of oil intake, which is important for the prevention of cardiovascular diseases

Molecular Evolution of Two Distinct dmrt1 Promoters for Germ and Somatic Cells in Vertebrate Gonads.

Science.gov (United States)

Mawaribuchi, Shuuji; Musashijima, Masato; Wada, Mikako; Izutsu, Yumi; Kurakata, Erina; Park, Min Kyun; Takamatsu, Nobuhiko; Ito, Michihiko

2017-03-01

The transcription factor DMRT1 has important functions in two distinct processes, somatic-cell masculinization and germ-cell development in mammals. However, it is unknown whether the functions are conserved during evolution, and what mechanism underlies its expression in the two cell lineages. Our analysis of the Xenopus laevis and Silurana tropicalis dmrt1 genes indicated the presence of two distinct promoters: one upstream of the noncoding first exon (ncEx1), and one within the first intron. In contrast, only the ncEx1-upstream promoter was detected in the dmrt1 gene of the agnathan sand lamprey, which expressed dmrt1 exclusively in the germ cells. In X. laevis, the ncEx1- and exon 2-upstream promoters were predominantly used for germ-cell and somatic-cell transcription, respectively. Importantly, knockdown of the ncEx1-containing transcript led to reduced germ-cell numbers in X. laevis gonads. Intriguingly, two genetically female individuals carrying the knockdown construct developed testicles. Analysis of the reptilian leopard gecko dmrt1 revealed the absence of ncEx1. We propose that dmrt1 regulated germ-cell development in the vertebrate ancestor, then acquired another promoter in its first intron to regulate somatic-cell masculinization during gnathostome evolution. In the common ancestor of reptiles and mammals, only one promoter got function for both the two cell lineages, accompanied with the loss of ncEx1. In addition, we found a conserved noncoding sequence (CNS) in the dmrt1 5'-flanking regions only among amniote species, and two CNSs in the introns among most vertebrates except for agnathans. Finally, we discuss relationships between these CNSs and the promoters of dmrt1 during vertebrate evolution. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Tracking cross-contamination transfer dynamics at a mock retail deli market using GloGerm.

Science.gov (United States)

Maitland, Jessica; Boyer, Renee; Gallagher, Dan; Duncan, Susan; Bauer, Nate; Kause, Janell; Eifert, Joseph

2013-02-01

Ready-to-eat (RTE) deli meats are considered a food at high risk for causing foodborne illness. Deli meats are listed as the highest risk RTE food vehicle for Listeria monocytogenes. Cross-contamination in the retail deli market may contribute to spread of pathogens to deli meats. Understanding potential cross-contamination pathways is essential for reducing the risk of contaminating various products. The objective of this study was to track cross-contamination pathways through a mock retail deli market using an abiotic surrogate, GloGerm, to visually represent how pathogens may spread through the deli environment via direct contact with food surfaces. Six contamination origination sites (slicer blade, meat chub, floor drain, preparation table, employee's glove, and employee's hands) were evaluated separately. Each site was inoculated with 20 ml of GloGerm, and a series of standard deli operations were completed (approximately 10 min of work). Photographs were then taken under UV illumination to visualize spread of GloGerm throughout the deli. A sensory panel evaluated the levels of contamination on the resulting contaminated surfaces. Five of the six contamination origination sites were associated with transfer of GloGerm to the deli case door handle, slicer blade, meat chub, preparation table, and the employee's gloves. Additional locations became contaminated (i.e., deli case shelf, prep table sink, and glove box), but this contamination was not consistent across all trials. Contamination did not spread from the floor drain to any food contact surfaces. The findings of this study reinforce the need for consistent equipment cleaning and food safety practices among deli workers to minimize cross-contamination.

Digestibilidade dos aminoácidos do milho, farelo de soja e gérmen integral de milho em galos e frangos de corte cecectomizados Digestibility of amino acids from corn, soybean meal and corn germ meal in cecectomized roosters and broilers

Directory of Open Access Journals (Sweden)

Alexandre Barbosa de Brito

2011-10-01

Full Text Available Este experimento foi conduzido para avaliar a digestibilidade dos aminoácidos do milho, farelo de soja e gérmen integral de milho em galos e frangos de corte cecectomizados. Foram utilizados 16 galos Lohmann-LSL com 45 semanas de idade, 40 frangos de corte machos AgRoss 508, sendo 20 com 21 dias de idade e outros 20 com 42 dias de idade, todos cecectomizados. Adotou-se delineamento inteiramente casualizado com três categorias animais (galos; frangos aos 21 dias; e frangos aos 42 dias de idade para cada alimento avaliado e cada ave considerada uma unidade experimental. O ensaio durou 84 horas: nas 36 horas iniciais, as aves foram submetidas a jejum e nas 48 horas subsequentes, à ingestão forçada dos alimentos, feita com sonda esofágica introduzida diretamente no inglúvio das aves. As excretas produzidas foram colhidas duas vezes ao dia nas 48 horas subseqüentes. Os valores de aminoácidos digestíveis verdadeiros determinados para o milho e gérmen integral de milho determinados com frangos submetidos ao procedimento experimental aos 21 dias de idade foram inferiores aos do grupo controle (galos. Contudo, os mesmos resultados não foram observados para o farelo de soja. O aproveitamento de aminoácidos foi maior nos frangos submetidos ao procedimento experimental aos 42 dias de idade em comparação aos do grupo controle (galos adultos, independentemente do alimento avaliado. O teor de aminoácidos digestíveis verdadeiros totais obtidos foi de 7,24; 6,25 e 7,33% para o milho, 9,66; 9,14 e 9,91% para o gérmen integral de milho e 41,82; 41,78 e 42,02% para o farelo de soja, valores determinados com galos, frangos aos 21 e aos 42 dias de idade, respectivamente. Observou-se que, com o amadurecimento do trato digestório, aumenta o aproveitamento proteico em aves que consomem milho e gérmen integral de milho.This experiment was carried out to evaluate the digestibility of the amino acids from corn, soybean meal and corn germ meal in

Adult Immunohistochemical Markers Fail to Detect Intratubular Germ Cell Neoplasia in Prepubertal Boys with Cryptorchidism

DEFF Research Database (Denmark)

Kvist, Kolja; Clasen-Linde, Erik; Cortes, Dina

2013-01-01

Intratubular germ cell neoplasia (ITGCN) is a precursor to testicular germ cell cancer. It is characterized by large germ cells with large nuclei with a hyperchromatic, coarse chromatin pattern, large prominent nucleoli and abundant pale cytoplasm. In prepubertal boys these cells are located both...

Urethral metastasis from non-seminomatous germ cell tumor: a case report

Directory of Open Access Journals (Sweden)

Joffe Johnathan

2011-01-01

Full Text Available Abstract Introduction We present a case of nonseminomatous germ cell tumor of the testes with acute urinary retention secondary to urethral metastasis. This presentation, and similar cases of urethral metastasis from this tumor, have not been reported previously. Case presentation A 35-year-old Caucasian man presented to hospital with a history of acute urinary retention. On examination he was found to have right testicular enlargement with raised β-human chorionic gonadotrophin, serum α-fetoprotein and lactate dehydrogenase levels. He underwent radical left inguinal orchidectomy and histology confirmed a nonseminomatous germ cell tumor of the testes. Cystoscopy carried out due to urinary retention showed penile metastasis and the biopsy confirmed metastatic malignant undifferentiated teratoma. Staging computed tomography scan and magnetic resonance imaging of the pelvis showed pulmonary, pelvic nodal, ischial and penile metastasis. The diagnosis of the International Germ Cell Cancer Collaborative Group of poor prognosis metastatic nonseminomatous germ cell tumor was made, following which he received four cycles of bleomycin, etoposide and cisplatin chemotherapy with curative intent. He had a complete marker and an excellent radiological response. He is currently under follow up. Conclusion The unusual presentation of lymphovascular spread in this case of nonseminomatous germ cell tumor highlights the need to include routine pelvic imaging in the assessment and follow up of testicular cancer.

Maneiras de pensar e de agir de idosos frente às questões relativas à funcionalidade/incapacidade

Directory of Open Access Journals (Sweden)

Josianne Katherine Pereira

2014-08-01

Full Text Available A funcionalidade é uma dimensão crucial da saúde da pessoa idosa. O objetivo desse trabalho é investigar os elementos que participam da construção dos significados da incapacidade para o idoso residente na cidade de Bambuí (MG. Trata-se de uma abordagem qualitativa na qual o modelo de signos, significados e ações foi utilizado na coleta e análise dos dados. Foram entrevistados 57 idosos (30 mulheres; 27 homens com idades entre 61 e 96 anos, cadastrados nas Unidades Básicas de Saúde (SUS da cidade. Os idosos compreendem a funcionalidade/incapacidade (disease, como o "dar conta/não dar conta" ou "dar trabalho" (illness. "Não dar conta" refere-se às perdas funcionais inexoráveis atribuídas à velhice, enquanto "Dar trabalho" a uma condição definitiva que gera dor e sofrimento à pessoa e a quem dela cuida. As maneiras de lidar com o "não dar conta" passam por se conformar, enquanto com o "dar trabalho", orar. A religiosidade e o conformismo podem ajudar nos momentos de crise; mas, revelam a carência de recursos e de alternativas de apoio e de intervenção nos casos mais graves.

Incremental and Enhanced Scanline-Based Segmentation Method for Surface Reconstruction of Sparse LiDAR Data

Directory of Open Access Journals (Sweden)

Weimin Wang

2016-11-01

Full Text Available The segmentation of point clouds is an important aspect of automated processing tasks such as semantic extraction. However, the sparsity and non-uniformity of the point clouds gathered by the popular 3D mobile LiDAR devices pose many challenges for existing segmentation methods. To improve the segmentation results of point clouds from mobile LiDAR devices, we propose an optimized segmentation method based on Scanline Continuity Constraint (SLCC in this work. Unlike conventional scanline-based segmentation methods, SLCC clusters scanlines using the continuity constraints in terms of the distance as well as the direction of two consecutive points. In addition, scanline clusters are agglomerated not only into primitive geometrical shapes but also irregular shapes. Another downside to existing segmentation methods is that they are not capable of incremental processing. This causes unnecessary memory and time consumption for applications that require frame-wise segmentation or when new point clouds are added. In order to address this, we propose an incremental scheme—the Incremental Recursive Segmentation (IRIS, that can be easily applied to any segmentation method. IRIS is achieved by combining the segments of newly added point clouds and the previously segmented results. Furthermore, as an example application, we construct a processing pipeline consisting of plane fitting and surface reconstruction using the segmentation results. Finally, we evaluate the proposed methods on three datasets acquired from a handheld Velodyne HDL-32E LiDAR device. The experimental results verify the efficiency of IRIS for any segmentation method and the advantages of SLCC for processing mobile LiDAR data.

Orienteerumiskaart vs. LiDAR / Marek Karm

Index Scriptorium Estoniae

Karm, Marek

2012-01-01

Bakalaureusetööst, mille eesmärk oli võrrelda orienteerumiskaardi reljeefi LiDAR-i andmete põhjal saadava reljeefimudeliga ning leida vastus küsimusele, kas o-kaart võib olla kasulik kooste- või kontrollmaterjal mistahes reljeefimudelile

Mapping of past stand-level forest disturbances and estimation of time since disturbance using simulated spaceborne LiDAR data

Science.gov (United States)

Sanchez Lopez, N.; Hudak, A. T.; Boschetti, L.

2017-12-01

Explicit information on the location, the size or the time since disturbance (TSD) at the forest stand level complements field inventories, improves the monitoring of forest attributes and the estimation of biomass and carbon stocks. Even-aged stands display homogenous structural parameters that have often been used as a proxy of stand age. Consequently, performing object-oriented analysis on Light Detection and Ranging (LiDAR) data has potential to detect historical stand-replacing disturbances. Recent research has shown good results in the delineation of forest stands as well as in the prediction of disturbance occurrence and TSD using airborne LiDAR data. Nevertheless, the use of airborne LiDAR for systematic monitoring of forest stands is limited by the sporadic availability of data and its high cost compared to satellite instruments. NASA's forthcoming Global Ecosystem Dynamics Investigations (GEDI) mission will provide systematically data on the vertical structure of the vegetation, but its use presents some challenges compared to the common discrete-return airborne LiDAR. GEDI will be a waveform instrument, hence the summary metrics will be different to those obtained with airborne LiDAR, and the sampling configuration could limit the utility of the data, especially on heterogeneous landscapes. The potential use of GEDI data for forest characterization at the stand level would therefore depend on the predictive power of the GEDI footprint metrics, and on the density of point samples relative to forest stand size (i.e. the number of observation/footprints per stand).In this study, we assess the performance of simulated GEDI-derived metrics for stand characterization and estimation of TSD, and the point density needed to adequately identify forest stands, which translates - due to the fixed sampling configuration - into the minimum temporal interval needed to collect a sufficient number of points. The study area was located in the Clear Creek, Selway River

EKSTRAKSI DAN ANALISIS FITOSTEROL LEMBAGA GANDUM [Extraction and analysis of Phytosterol from wheat germ (Triticum sp.

Directory of Open Access Journals (Sweden)

Latifah K Darusman3

2005-04-01

Full Text Available Phytosterol may reduce the absorption of cholesterol, and used for preventing atherosclerosis. It is limited in soybean, but potentially abundant in wheat germ. Research on the utilization of wheat germ sterol had not been reported so far. Many aspects of germ sterol extraction from wheat germ and its characteristics were still unknown. In this research, the best extraction method, kinds and content of phytosterol from wheat germ were investigated.This research consisted of two steps: (1 extraction of phytosterol directly form whole germ and ground germ using hexane, and indirect extraction through germ oil using hexane and mixed solvent of hexane and ethanol, and direct extraction from ground germ using ethanol; (2 analysis of the type and content of phytosterol in the crude extract through the following steps: preparation of crude extract, fractionation, and analysis.Results showed that indirect extraction through germ oil was considered as the best method which yielded 1.37% of phytosterol. The highest yield was obtained when extracted using a mixed solvent of hexane – ethanol 82:18. However, the odor of ethanol and hexane (gasoline like odor was still detected. The solvent’s ratio of hexane to ethanol at 1:2 resulted better odor of the extract. Extraction of sterol using ethanol yielded 18.39% of sterol when the ratio of germ to ethanol at 1:10 (w/v was applied.Results of quantitative analysis on the main component of crude extract of wheat germ sterol showed that the total content of sterol extracted with mixed solvent was higher than those extracted with ethanol. The ratio of hexane to ethanol at 1:1 (v/v gave higher content of total sterol, stigmasterol and campesterol, whereas higher content of -sitosterol was produced at the solvent’s ratio of hexane to ethanol at 1:2 (v/v.

In-Field High-Throughput Phenotyping of Cotton Plant Height Using LiDAR

OpenAIRE

Shangpeng Sun; Changying Li; Andrew H. Paterson

2017-01-01

A LiDAR-based high-throughput phenotyping (HTP) system was developed for cotton plant phenotyping in the field. The HTP system consists of a 2D LiDAR and an RTK-GPS mounted on a high clearance tractor. The LiDAR scanned three rows of cotton plots simultaneously from the top and the RTK-GPS was used to provide the spatial coordinates of the point cloud during data collection. Configuration parameters of the system were optimized to ensure the best data quality. A height profile for each plot w...

FY12 St Johns River Water Management LiDAR Survey: Putnam (FL)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Light Detection and Ranging (LiDAR) dataset is a survey of the FY12 St Johns River Water Management LiDAR Survey, project area in north-central Florida and...

Achieving Accuracy Requirements for Forest Biomass Mapping: A Data Fusion Method for Estimating Forest Biomass and LiDAR Sampling Error with Spaceborne Data

Science.gov (United States)

Montesano, P. M.; Cook, B. D.; Sun, G.; Simard, M.; Zhang, Z.; Nelson, R. F.; Ranson, K. J.; Lutchke, S.; Blair, J. B.

2012-01-01

The synergistic use of active and passive remote sensing (i.e., data fusion) demonstrates the ability of spaceborne light detection and ranging (LiDAR), synthetic aperture radar (SAR) and multispectral imagery for achieving the accuracy requirements of a global forest biomass mapping mission. This data fusion approach also provides a means to extend 3D information from discrete spaceborne LiDAR measurements of forest structure across scales much larger than that of the LiDAR footprint. For estimating biomass, these measurements mix a number of errors including those associated with LiDAR footprint sampling over regional - global extents. A general framework for mapping above ground live forest biomass (AGB) with a data fusion approach is presented and verified using data from NASA field campaigns near Howland, ME, USA, to assess AGB and LiDAR sampling errors across a regionally representative landscape. We combined SAR and Landsat-derived optical (passive optical) image data to identify forest patches, and used image and simulated spaceborne LiDAR data to compute AGB and estimate LiDAR sampling error for forest patches and 100m, 250m, 500m, and 1km grid cells. Forest patches were delineated with Landsat-derived data and airborne SAR imagery, and simulated spaceborne LiDAR (SSL) data were derived from orbit and cloud cover simulations and airborne data from NASA's Laser Vegetation Imaging Sensor (L VIS). At both the patch and grid scales, we evaluated differences in AGB estimation and sampling error from the combined use of LiDAR with both SAR and passive optical and with either SAR or passive optical alone. This data fusion approach demonstrates that incorporating forest patches into the AGB mapping framework can provide sub-grid forest information for coarser grid-level AGB reporting, and that combining simulated spaceborne LiDAR with SAR and passive optical data are most useful for estimating AGB when measurements from LiDAR are limited because they minimized

High Frequency Field Measurements of an Undular Bore Using a 2D LiDAR Scanner

Directory of Open Access Journals (Sweden)

Kévin Martins

2017-05-01

Full Text Available The secondary wave field associated with undular tidal bores (known as whelps has been barely studied in field conditions: the wave field can be strongly non-hydrostatic, and the turbidity is generally high. In situ measurements based on pressure or acoustic signals can therefore be limited or inadequate. The intermittent nature of this process in the field and the complications encountered in the downscaling to laboratory conditions also render its study difficult. Here, we present a new methodology based on LiDAR technology to provide high spatial and temporal resolution measurements of the free surface of an undular tidal bore. A wave-by-wave analysis is performed on the whelps, and comparisons between LiDAR, acoustic and pressure-derived measurements are used to quantify the non-hydrostatic nature of this phenomenon. A correction based on linear wave theory applied on individual wave properties improves the results from the pressure transducer (Root mean square error, R M S E of 0 . 19 m against 0 . 38 m; however, more robust data is obtained from an upwards-looking acoustic sensor despite high turbidity during the passage of the whelps ( R M S E of 0 . 05 m. Finally, the LiDAR scanner provides the unique possibility to study the wave geometry: the distribution of measured wave height, period, celerity, steepness and wavelength are presented. It is found that the highest wave from the whelps can be steeper than the bore front, explaining why breaking events are sometimes observed in the secondary wave field of undular tidal bores.

University of Dar es Salaam Library Journal

African Journals Online (AJOL)

University of Dar es Salaam Library Journal. ... PROMOTING ACCESS TO AFRICAN RESEARCH ... These include organization and dissemination of information, library education and training, information technology and its application in ...

Real-time computational photon-counting LiDAR

Science.gov (United States)

Edgar, Matthew; Johnson, Steven; Phillips, David; Padgett, Miles

2018-03-01

The availability of compact, low-cost, and high-speed MEMS-based spatial light modulators has generated widespread interest in alternative sampling strategies for imaging systems utilizing single-pixel detectors. The development of compressed sensing schemes for real-time computational imaging may have promising commercial applications for high-performance detectors, where the availability of focal plane arrays is expensive or otherwise limited. We discuss the research and development of a prototype light detection and ranging (LiDAR) system via direct time of flight, which utilizes a single high-sensitivity photon-counting detector and fast-timing electronics to recover millimeter accuracy three-dimensional images in real time. The development of low-cost real time computational LiDAR systems could have importance for applications in security, defense, and autonomous vehicles.

Exposure to Endocrine Disruptor Induces Transgenerational Epigenetic Deregulation of MicroRNAs in Primordial Germ Cells

Czech Academy of Sciences Publication Activity Database

Brieno-Enriguez, M. A.; García-López, J.; Cárdenas, D.B.; Guibert, S.; Cleroux, E.; Děd, Lukáš; de Dios Hourcade, J.; Pěknicová, Jana; Weber, M.; del Mazo, J.

2015-01-01

Roč. 10, č. 4 (2015) E-ISSN 1932-6203 R&D Projects: GA ČR(CZ) GAP503/12/1834; GA MŠk(CZ) ED1.1.00/02.0109 Institutional support: RVO:86652036 Keywords : endocrine disruptor * epigenetic s * primordial germ cells * vinclozolin * TUNEL analysis * methylation Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.057, year: 2015

Fatty acid composition of maize germ oil from high-oil hybrids wet-milling processing

Directory of Open Access Journals (Sweden)

Jovanović Petar Lj.

2005-01-01

Full Text Available Maize germ was obtained by wet-milling laboratory processing of domestic high-oil maize hybrids. After separation, the germ was subjected to extraction of maize oil. Fatty acid composition of maize germ oil was determined by gas chromatography. The results showed very high levels of unsaturated fatty acids and a constant sum of oleic and linoleic acids in oils of different maize hybrids.

Using LiDAR to as a Potential Method for Detection Plastics in Water

Science.gov (United States)

Lee, G.; Neal, A.; Mielke, R.; Bookhagen, B.

2010-12-01

We conducted a series of experiments using Light Detection and Range (LiDAR) technology as an innovative way to detect the presence of plastics in water. The purpose of this study was to determine if LiDAR technology is a feasible, non-intrusive alternative to dredging in the ocean to determine the amount of plastics in the ocean. We used a tripod mounted RIEGL LMS-Z420i terrestrial LiDAR 3-D scanner and the associated operating software RiSCAN Pro. The terrestrial LiDAR is an optical remote sensing technology that measures the reflection of near infared light to find the range of a distant target that is most commonly used to create high precision digital elevation models of terrestrial surfaces. In theory, water should absorb the near infared light, while the plastics should reflect the light. The experiments consisted of different scale models of plastic pellets in water, ranging from a small plastic dish to a large tank to test the range of the LiDAR in different salt and fresh water mediums.

A DArT marker genetic map of perennial ryegrass (Lolium perenne L.) integrated with detailed comparative mapping information; comparison with existing DArT marker genetic maps of Lolium perenne, L. multiflorum and Festuca pratensis.

Science.gov (United States)

King, Julie; Thomas, Ann; James, Caron; King, Ian; Armstead, Ian

2013-07-03

Ryegrasses and fescues (genera, Lolium and Festuca) are species of forage and turf grasses which are used widely in agricultural and amenity situations. They are classified within the sub-family Pooideae and so are closely related to Brachypodium distachyon, wheat, barley, rye and oats. Recently, a DArT array has been developed which can be used in generating marker and mapping information for ryegrasses and fescues. This represents a potential common marker set for ryegrass and fescue researchers which can be linked through to comparative genomic information for the grasses. A F2 perennial ryegrass genetic map was developed consisting of 7 linkage groups defined by 1316 markers and deriving a total map length of 683 cM. The marker set included 866 DArT and 315 gene sequence-based markers. Comparison with previous DArT mapping studies in perennial and Italian ryegrass (L. multiflorum) identified 87 and 105 DArT markers in common, respectively, of which 94% and 87% mapped to homoeologous linkage groups. A similar comparison with meadow fescue (F. pratensis) identified only 28 DArT markers in common, of which c. 50% mapped to non-homoelogous linkage groups. In L. perenne, the genetic distance spanned by the DArT markers encompassed the majority of the regions that could be described in terms of comparative genomic relationships with rice, Brachypodium distachyon, and Sorghum bicolor. DArT markers are likely to be a useful common marker resource for ryegrasses and fescues, though the success in aligning different populations through the mapping of common markers will be influenced by degrees of population interrelatedness. The detailed mapping of DArT and gene-based markers in this study potentially allows comparative relationships to be derived in future mapping populations characterised using solely DArT markers.

POMB/ACE chemotherapy for mediastinal germ cell tumours.

Science.gov (United States)

Bower, M; Brock, C; Holden, L; Nelstrop, A; Makey, A R; Rustin, G J; Newlands, E S

1997-05-01

Mediastinal germ cell tumours (MGCT) are rare and most published series reflect the experiences of individual institutions over many years. Since 1979, we have treated 16 men (12 non-seminomatous germ cell tumours and 4 seminomas) with newly diagnosed primary MGCT with POMB/ACE chemotherapy and elective surgical resection of residual masses. This approach yielded complete remissions in 15/16 (94%) patients. The median follow-up was 6.0 years and no relapses occurred more than 2 years after treatment. The 5 year overall survival in the non-seminomatous germ cell tumours (NSGCT) is 73% (95% confidence interval 43-90%). One patient with NSGCT developed drug-resistant disease and died without achieving remission and 2 patients died of relapsed disease. In addition, 4 patients with bulky and/or metastatic seminoma were treated with POMB/ACE. One died of treatment-related neutropenic sepsis in complete remission and one died of relapsed disease. Finally, 4 patients (2 NSGCT and 2 seminomas) referred at relapse were treated with POMB/ACE and one was successfully salvaged. The combination of POMB/ACE chemotherapy and surgery is effective management for MGCT producing high long-term survival rates.

Diversity arrays technology (DArT) markers in apple for genetic linkage maps.

Science.gov (United States)

Schouten, Henk J; van de Weg, W Eric; Carling, Jason; Khan, Sabaz Ali; McKay, Steven J; van Kaauwen, Martijn P W; Wittenberg, Alexander H J; Koehorst-van Putten, Herma J J; Noordijk, Yolanda; Gao, Zhongshan; Rees, D Jasper G; Van Dyk, Maria M; Jaccoud, Damian; Considine, Michael J; Kilian, Andrzej

2012-03-01

Diversity Arrays Technology (DArT) provides a high-throughput whole-genome genotyping platform for the detection and scoring of hundreds of polymorphic loci without any need for prior sequence information. The work presented here details the development and performance of a DArT genotyping array for apple. This is the first paper on DArT in horticultural trees. Genetic mapping of DArT markers in two mapping populations and their integration with other marker types showed that DArT is a powerful high-throughput method for obtaining accurate and reproducible marker data, despite the low cost per data point. This method appears to be suitable for aligning the genetic maps of different segregating populations. The standard complexity reduction method, based on the methylation-sensitive PstI restriction enzyme, resulted in a high frequency of markers, although there was 52-54% redundancy due to the repeated sampling of highly similar sequences. Sequencing of the marker clones showed that they are significantly enriched for low-copy, genic regions. The genome coverage using the standard method was 55-76%. For improved genome coverage, an alternative complexity reduction method was examined, which resulted in less redundancy and additional segregating markers. The DArT markers proved to be of high quality and were very suitable for genetic mapping at low cost for the apple, providing moderate genome coverage. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s11032-011-9579-5) contains supplementary material, which is available to authorized users.

Remote Sensing of Sonoran Desert Vegetation Structure and Phenology with Ground-Based LiDAR

Directory of Open Access Journals (Sweden)

Joel B. Sankey

2014-12-01

Full Text Available Long-term vegetation monitoring efforts have become increasingly important for understanding ecosystem response to global change. Many traditional methods for monitoring can be infrequent and limited in scope. Ground-based LiDAR is one remote sensing method that offers a clear advancement to monitor vegetation dynamics at high spatial and temporal resolution. We determined the effectiveness of LiDAR to detect intra-annual variability in vegetation structure at a long-term Sonoran Desert monitoring plot dominated by cacti, deciduous and evergreen shrubs. Monthly repeat LiDAR scans of perennial plant canopies over the course of one year had high precision. LiDAR measurements of canopy height and area were accurate with respect to total station survey measurements of individual plants. We found an increase in the number of LiDAR vegetation returns following the wet North American Monsoon season. This intra-annual variability in vegetation structure detected by LiDAR was attributable to a drought deciduous shrub Ambrosia deltoidea, whereas the evergreen shrub Larrea tridentata and cactus Opuntia engelmannii had low variability. Benefits of using LiDAR over traditional methods to census desert plants are more rapid, consistent, and cost-effective data acquisition in a high-resolution, 3-dimensional context. We conclude that repeat LiDAR measurements can be an effective method for documenting ecosystem response to desert climatology and drought over short time intervals and at detailed-local spatial scale.

Canopy wake measurements using multiple scanning wind LiDARs

Science.gov (United States)

Markfort, C. D.; Carbajo Fuertes, F.; Iungo, V.; Stefan, H. G.; Porte-Agel, F.

2014-12-01

Canopy wakes have been shown, in controlled wind tunnel experiments, to significantly affect the fluxes of momentum, heat and other scalars at the land and water surface over distances of ˜O(1 km), see Markfort et al. (EFM, 2013). However, there are currently no measurements of the velocity field downwind of a full-scale forest canopy. Point-based anemometer measurements of wake turbulence provide limited insight into the extent and details of the wake structure, whereas scanning Doppler wind LiDARs can provide information on how the wake evolves in space and varies over time. For the first time, we present measurements of the velocity field in the wake of a tall patch of forest canopy. The patch consists of two uniform rows of 40-meter tall deciduous, plane trees, which border either side of the Allée de Dorigny, near the EPFL campus. The canopy is approximately 250 m long, and it is approximately 40 m wide, along the direction of the wind. A challenge faced while making field measurements is that the wind rarely intersects a canopy normal to the edge. The resulting wake flow may be deflected relative to the mean inflow. Using multiple LiDARs, we measure the evolution of the wake due to an oblique wind blowing over the canopy. One LiDAR is positioned directly downwind of the canopy to measure the flow along the mean wind direction and the other is positioned near the canopy to evaluate the transversal component of the wind and how it varies with downwind distance from the canopy. Preliminary results show that the open trunk space near the base of the canopy results in a surface jet that can be detected just downwind of the canopy and farther downwind dissipates as it mixes with the wake flow above. A time-varying recirculation zone can be detected by the periodic reversal of the velocity near the surface, downwind of the canopy. The implications of canopy wakes for measurement and modeling of surface fluxes will be discussed.

Excreta Disposal in Dar-es-salaam

NARCIS (Netherlands)

Chaggu, E.; Mashouri, D.; Buuren, van J.C.L.; Sanders, W.T.M.; Lettinga, G.

2002-01-01

The sociocultural and socioeconomic situation of sanitation in Dar-es-Salaam (Dsm), Tanzania, was studied with explicit emphasis on pit-latrines. Without considering the sociocultural conditions, the so-called best solution might not be the right one. Therefore, in order to achieve the intended

Green infrastructure for flood risk management in Dar es Salaam and Copenhagen

DEFF Research Database (Denmark)

Mguni, Patience; Herslund, Lise Byskov; Jensen, Marina Bergen

2015-01-01

, a comparison of the opportunities and barriers to the implementation of SUDS in Dar es Salaam and Copenhagen is presented. The results indicate that a bottom-up approach in Dar es Salaam is important, with the community level taking the lead, while in Copenhagen the top-down approach currently employed......The risk of flooding in urban areas could be better approached by complementing conventional sewer systems with sustainable urban drainage systems (SUDS) for storm-water management. This may be the case for developing world cities like Dar es Salaam with incomplete sewer services, as well as cities...

Geospatial revolution and remote sensing LiDAR in Mesoamerican archaeology

Science.gov (United States)

Chase, Arlen F.; Fisher, Christopher T.; Leisz, Stephen J.; Weishampel, John F.

2012-01-01

The application of light detection and ranging (LiDAR), a laser-based remote-sensing technology that is capable of penetrating overlying vegetation and forest canopies, is generating a fundamental shift in Mesoamerican archaeology and has the potential to transform research in forested areas world-wide. Much as radiocarbon dating that half a century ago moved archaeology forward by grounding archaeological remains in time, LiDAR is proving to be a catalyst for an improved spatial understanding of the past. With LiDAR, ancient societies can be contextualized within a fully defined landscape. Interpretations about the scale and organization of densely forested sites no longer are constrained by sample size, as they were when mapping required laborious on-ground survey. The ability to articulate ancient landscapes fully permits a better understanding of the complexity of ancient Mesoamerican urbanism and also aids in modern conservation efforts. The importance of this geospatial innovation is demonstrated with newly acquired LiDAR data from the archaeological sites of Caracol, Cayo, Belize and Angamuco, Michoacán, Mexico. These data illustrate the potential of technology to act as a catalytic enabler of rapid transformational change in archaeological research and interpretation and also underscore the value of on-the-ground archaeological investigation in validating and contextualizing results. PMID:22802623

Geospatial revolution and remote sensing LiDAR in Mesoamerican archaeology.

Science.gov (United States)

Chase, Arlen F; Chase, Diane Z; Fisher, Christopher T; Leisz, Stephen J; Weishampel, John F

2012-08-07

The application of light detection and ranging (LiDAR), a laser-based remote-sensing technology that is capable of penetrating overlying vegetation and forest canopies, is generating a fundamental shift in Mesoamerican archaeology and has the potential to transform research in forested areas world-wide. Much as radiocarbon dating that half a century ago moved archaeology forward by grounding archaeological remains in time, LiDAR is proving to be a catalyst for an improved spatial understanding of the past. With LiDAR, ancient societies can be contextualized within a fully defined landscape. Interpretations about the scale and organization of densely forested sites no longer are constrained by sample size, as they were when mapping required laborious on-ground survey. The ability to articulate ancient landscapes fully permits a better understanding of the complexity of ancient Mesoamerican urbanism and also aids in modern conservation efforts. The importance of this geospatial innovation is demonstrated with newly acquired LiDAR data from the archaeological sites of Caracol, Cayo, Belize and Angamuco, Michoacán, Mexico. These data illustrate the potential of technology to act as a catalytic enabler of rapid transformational change in archaeological research and interpretation and also underscore the value of on-the-ground archaeological investigation in validating and contextualizing results.

In-Field High-Throughput Phenotyping of Cotton Plant Height Using LiDAR

Directory of Open Access Journals (Sweden)

Shangpeng Sun

2017-04-01

Full Text Available A LiDAR-based high-throughput phenotyping (HTP system was developed for cotton plant phenotyping in the field. The HTP system consists of a 2D LiDAR and an RTK-GPS mounted on a high clearance tractor. The LiDAR scanned three rows of cotton plots simultaneously from the top and the RTK-GPS was used to provide the spatial coordinates of the point cloud during data collection. Configuration parameters of the system were optimized to ensure the best data quality. A height profile for each plot was extracted from the dense three dimensional point clouds; then the maximum height and height distribution of each plot were derived. In lab tests, single plants were scanned by LiDAR using 0.5° angular resolution and results showed an R2 value of 1.00 (RMSE = 3.46 mm in comparison to manual measurements. In field tests using the same angular resolution; the LiDAR-based HTP system achieved average R2 values of 0.98 (RMSE = 65 mm for cotton plot height estimation; compared to manual measurements. This HTP system is particularly useful for large field application because it provides highly accurate measurements; and the efficiency is greatly improved compared to similar studies using the side view scan.

Contrasting Patterns of Damage and Recovery in Logged Amazon Forests From Small Footprint LiDAR Data

Science.gov (United States)

Morton, D. C.; Keller, M.; Cook, B. D.; Hunter, Maria; Sales, Marcio; Spinelli, L.; Victoria, D.; Andersen, H.-E.; Saleska, S.

2012-01-01

Tropical forests ecosystems respond dynamically to climate variability and disturbances on time scales of minutes to millennia. To date, our knowledge of disturbance and recovery processes in tropical forests is derived almost exclusively from networks of forest inventory plots. These plots typically sample small areas (less than or equal to 1 ha) in conservation units that are protected from logging and fire. Amazon forests with frequent disturbances from human activity remain under-studied. Ongoing negotiations on REDD+ (Reducing Emissions from Deforestation and Forest Degradation plus enhancing forest carbon stocks) have placed additional emphasis on identifying degraded forests and quantifying changing carbon stocks in both degraded and intact tropical forests. We evaluated patterns of forest disturbance and recovery at four -1000 ha sites in the Brazilian Amazon using small footprint LiDAR data and coincident field measurements. Large area coverage with airborne LiDAR data in 2011-2012 included logged and unmanaged areas in Cotriguacu (Mato Grosso), Fiona do Jamari (Rondonia), and Floresta Estadual do Antimary (Acre), and unmanaged forest within Reserva Ducke (Amazonas). Logging infrastructure (skid trails, log decks, and roads) was identified using LiDAR returns from understory vegetation and validated based on field data. At each logged site, canopy gaps from logging activity and LiDAR metrics of canopy heights were used to quantify differences in forest structure between logged and unlogged areas. Contrasting patterns of harvesting operations and canopy damages at the three logged sites reflect different levels of pre-harvest planning (i.e., informal logging compared to state or national logging concessions), harvest intensity, and site conditions. Finally, we used multi-temporal LiDAR data from two sites, Reserva Ducke (2009, 2012) and Antimary (2010, 2011), to evaluate gap phase dynamics in unmanaged forest areas. The rates and patterns of canopy gap

Evaluation of corn germ from ethanol production as an alternative fat source in dairy cow diets.

Science.gov (United States)

Abdelqader, M M; Hippen, A R; Kalscheur, K F; Schingoethe, D J; Karges, K; Gibson, M L

2009-03-01

Sixteen multiparous cows (12 Holstein and 4 Brown Swiss, 132 +/- 20 d in milk) were used in a replicated 4 x 4 Latin square design with 4-wk periods to determine the effects of feeding corn germ on dairy cow performance. Diets were formulated with increasing concentrations of corn germ (Dakota Germ, Poet Nutrition, Sioux Falls, SD) at 0, 7, 14, and 21% of the diet dry matter (DM). All diets had a 55:45 forage to concentrate ratio, where forage was 55% corn silage and 45% alfalfa hay. Dietary fat increased from 4.8% in the control diet to 8.2% at the greatest inclusion level of corn germ. The addition of corn germ resulted in a quadratic response in DM intake with numerically greater intake at 14% of diet DM. Feeding corn germ at 7 and 14% of diet DM increased milk yield and energy-corrected milk as well as fat percentage and yield. Milk protein yield tended to decrease as the concentration of corn germ increased in the diet. Dietary treatments had no effect on feed efficiency, which averaged 1.40 kg of energy-corrected milk/kg of DMI. Increasing the dietary concentration of corn germ resulted in a linear increase in milk fat concentrations of monounsaturated and polyunsaturated fatty acids at the expense of saturated fatty acids. Milk fat concentration and yield of cis-9, trans-11 and trans-10, cis-12 conjugated linoleic acid were increased with increased dietary concentrations of corn germ. Although milk fat concentrations of both total trans-18:1 and cis-18:1 fatty acids increased linearly, a marked numeric increase in the concentration of trans-10 C18:1 was observed in milk from cows fed the 21% corn germ diet. A similar response was observed in plasma concentration of trans-10 C18:1. Feeding increasing concentrations of corn germ had no effect on plasma concentrations of glucose, triglyceride, or beta-hydroxybutyrate; however, the concentration of nonesterified fatty acids increased linearly, with plasma cholesterol concentration demonstrating a similar trend

Coastal monitoring solutions of the geomorphological response of beach-dune systems using multi-temporal LiDAR datasets (Vendée coast, France)

Science.gov (United States)

Le Mauff, Baptiste; Juigner, Martin; Ba, Antoine; Robin, Marc; Launeau, Patrick; Fattal, Paul

2018-03-01

Three beach and dune systems located in the northeastern part of the Bay of Biscay in France were monitored over 5 years with a time series of three airborne LiDAR datasets. The three study sites illustrate a variety of morphological beach types found in this region. Reproducible monitoring solutions adapted to basic and complex beach and dune morphologies using LiDAR time series were investigated over two periods bounded by the three surveys. The first period (between May 2008 and August 2010) is characterized by a higher prevalence of storm events, and thus has a greater potential for eroding the coast, than the second period (between August 2010 and September 2013). During the first period, the central and northeastern part of the Bay of Biscay was notably impacted by Storm Xynthia, with water levels and wave heights exceeding the 10-year return period and 1-year return period, respectively. Despite differences in dune morphology between the sites, the dune crest (Dhigh) and the dune base (Dlow) are efficiently extracted from each DEM. Based on the extracted dune base, an original shoreline mobility indicator is built displaying a combination of the horizontal and vertical migrations of this geomorphic indicator between two LiDAR datasets. A 'Geomorphic Change Detection' is also completed by computing DEMs of Difference (DoD) resulting in segregated maps of erosion and deposition and sediment budgets. Accounting for the accuracy of LiDAR datasets, a probabilistic approach at a 95% confidence interval is used as a threshold for the Geomorphic Change Detection showing more reliable results. However, caution should be taken when interpreting thresholded maps of changes and sediment budgets because some beach processes may be masked, especially on wide tidal beaches, by only keeping the most significant changes. The results of the shoreline mobility and Geomorphic Change Detection show a high variability in the beach responses between and within the three study

Radiation-induced genetic effects in germ cells of mammals

International Nuclear Information System (INIS)

Van der Schans, G.P.

1993-01-01

The objectives of the project are a better understanding of the fundamental principles that determine the radiation sensitivity in humans, with specific attention for the role of DNA repair in germ cells. The induction and repair of damage in DNA of germ cells of the Syrian golden hamster exposed to ionizing radiation is studied at biologically relevant doses. It has also been investigated which aspects of DNA sequence or chromosomal organisation are important with respect to their influence on the repairability of DNA damage. (R.P.) 10 refs

Role of wheat germ oil in radiation-induced oxidative stress and alteration in energy metabolism in rats

Energy Technology Data Exchange (ETDEWEB)

Shedid, S M.E. [National Center for Radiation Research and Technology, Atomic Energy Authority, Cairo (Egypt)

2008-07-01

The liver is essential in keeping the body functioning properly while muscular strength is important in sport as well as in daily activities. Exposure to ionizing radiation is thought to increase oxidative stress and damage liver and muscle tissues. Wheat germ oil is a natural unrefined vegetable oil. It is an excellent source of vitamin E, octacosanol, linoleic and linolenic essential fatty acids, which may be beneficial in neutralizing the free oxygen radicals. This study was designed to investigate the efficacy of wheat germ oil, on radiation induced oxidative damage in rat's liver and skeletal muscle. Wheat germ oil was supplemented orally via gavage to rats at a dose of 54 mg/ kg body weight for 14 successive days pre- and 7 days post-exposure to 5 Gy (single dose) of whole body gamma irradiation. Animals were sacrificed 7, 14 and 21 days post radiation exposure. The results revealed that whole body gamma irradiation of rats induces oxidative stress in liver and skeletal muscles obvious by significant elevation in the levels of xanthine oxidase and thiobarbituric acid reactive substances (TBARS) associated with significant decreases in the content of reduced glutathione, as well as decreases in xanthine dehydrogenase, superoxide dismutase, catalase and glutathione peroxidase activities. Irradiated rats showed also significant decreases in creatine phosphokinase, glutamate dehydrogenase and glucose-6- phosphate dehydrogenase activities while lactate dehydrogenase were significantly increased. Total iron, total copper and total calcium levels significantly increased in the liver and skeletal muscles of irradiated rats group compared to control group. Wheat germ oil treated-irradiated rats showed significantly less severe damage and remarkable improvement in all the measured parameters, compared to irradiated rats. It could be concluded that wheat germ oil by attenuating radiation-induced oxidative stress might play a role in maintaining liver and skeletal muscle

Role of wheat germ oil in radiation-induced oxidative stress and alteration in energy metabolism in rats

International Nuclear Information System (INIS)

Shedid, S.M.E.

2008-01-01

The liver is essential in keeping the body functioning properly while muscular strength is important in sport as well as in daily activities. Exposure to ionizing radiation is thought to increase oxidative stress and damage liver and muscle tissues. Wheat germ oil is a natural unrefined vegetable oil. It is an excellent source of vitamin E, octacosanol, linoleic and linolenic essential fatty acids, which may be beneficial in neutralizing the free oxygen radicals. This study was designed to investigate the efficacy of wheat germ oil, on radiation induced oxidative damage in rat's liver and skeletal muscle. Wheat germ oil was supplemented orally via gavage to rats at a dose of 54 mg/ kg body weight for 14 successive days pre- and 7 days post-exposure to 5 Gy (single dose) of whole body gamma irradiation. Animals were sacrificed 7, 14 and 21 days post radiation exposure. The results revealed that whole body gamma irradiation of rats induces oxidative stress in liver and skeletal muscles obvious by significant elevation in the levels of xanthine oxidase and thiobarbituric acid reactive substances (TBARS) associated with significant decreases in the content of reduced glutathione, as well as decreases in xanthine dehydrogenase, superoxide dismutase, catalase and glutathione peroxidase activities. Irradiated rats showed also significant decreases in creatine phosphokinase, glutamate dehydrogenase and glucose-6- phosphate dehydrogenase activities while lactate dehydrogenase were significantly increased. Total iron, total copper and total calcium levels significantly increased in the liver and skeletal muscles of irradiated rats group compared to control group. Wheat germ oil treated-irradiated rats showed significantly less severe damage and remarkable improvement in all the measured parameters, compared to irradiated rats. It could be concluded that wheat germ oil by attenuating radiation-induced oxidative stress might play a role in maintaining liver and skeletal muscle

Quantifying biomass consumption and carbon release from the California Rim fire by integrating airborne LiDAR and Landsat OLI data.

Science.gov (United States)

Garcia, Mariano; Saatchi, Sassan; Casas, Angeles; Koltunov, Alexander; Ustin, Susan; Ramirez, Carlos; Garcia-Gutierrez, Jorge; Balzter, Heiko

2017-02-01

Quantifying biomass consumption and carbon release is critical to understanding the role of fires in the carbon cycle and air quality. We present a methodology to estimate the biomass consumed and the carbon released by the California Rim fire by integrating postfire airborne LiDAR and multitemporal Landsat Operational Land Imager (OLI) imagery. First, a support vector regression (SVR) model was trained to estimate the aboveground biomass (AGB) from LiDAR-derived metrics over the unburned area. The selected model estimated AGB with an R 2 of 0.82 and RMSE of 59.98 Mg/ha. Second, LiDAR-based biomass estimates were extrapolated to the entire area before and after the fire, using Landsat OLI reflectance bands, Normalized Difference Infrared Index, and the elevation derived from LiDAR data. The extrapolation was performed using SVR models that resulted in R 2 of 0.73 and 0.79 and RMSE of 87.18 (Mg/ha) and 75.43 (Mg/ha) for the postfire and prefire images, respectively. After removing bias from the AGB extrapolations using a linear relationship between estimated and observed values, we estimated the biomass consumption from postfire LiDAR and prefire Landsat maps to be 6.58 ± 0.03 Tg (10 12  g), which translate into 12.06 ± 0.06 Tg CO2 e released to the atmosphere, equivalent to the annual emissions of 2.57 million cars.

Don Germán

OpenAIRE

Juan Luis Mejía

1991-01-01

El veranillo de San Juan hace soportable el mediodía. Los "chorros d'oro" inundan de amarillo los antejardines del Prado. Las golondrinas veraneras invaden, al atardecer, los alrededores de la Biblioteca Departamental. Los voceadores de la suerte del paseo Bolívar claman a los cuatro vientos el número que cambiará su destino . Pero algo falta definitivamente en esta Barranquilla. De alguna manera la ciudad ya no es la misma. Falta Don Germán.

Treatment Option Overview (Extragonadal Germ Cell Tumors)

Science.gov (United States)

... Cell Tumors Treatment Testicular Cancer Treatment Age and gender can affect the risk of extragonadal germ cell ... Headache. Change in bowel habits. Feeling very tired. Trouble walking. Trouble in seeing or moving the eyes. ...

General Information about Extragonadal Germ Cell Tumors

Science.gov (United States)

... Cell Tumors Treatment Testicular Cancer Treatment Age and gender can affect the risk of extragonadal germ cell ... Headache. Change in bowel habits. Feeling very tired. Trouble walking. Trouble in seeing or moving the eyes. ...

Diversity arrays technology (DArT) markers in apple for genetic linkage maps

NARCIS (Netherlands)

Schouten, H.J.; Weg, van de W.E.; Carling, J.; Khan, S.A.; McKay, S.J.; Kaauwen, van M.P.W.

2012-01-01

Diversity Arrays Technology (DArT) provides a high-throughput whole-genome genotyping platform for the detection and scoring of hundreds of polymorphic loci without any need for prior sequence information. The work presented here details the development and performance of a DArT genotyping array for

Fat absorption in germ-free and conventional rats artificially deprived of bile secretion

OpenAIRE

Demarne, Y.; Corring, T.; Pihet, A.; Sacquet, E.

1982-01-01

Bile duct ligation was performed in germ-free and conventional rats in order to study the effects of bile deprivation on the absorption of dietary lipids and the excretion of faecal lipids in the presence or the absence of gastrointestinal flora. The main consequence of bile duct ligation in conventional rats was decrease of about 50% in the apparent absorption of dietary lipids (peanut oil). In germ-free rats, absorption decreased by only about 25%.In conventional as well as in germ-free con...

Involvement of epigenetic modifiers in the pathogenesis of testicular dysgenesis and germ cell cancer

DEFF Research Database (Denmark)

Lawaetz, Andreas C.; Almstrup, Kristian

2015-01-01

Testicular germ cell cancer manifests mainly in young adults as a seminoma or non-seminoma. The solid tumors are preceded by the presence of a non-invasive precursor cell, the carcinoma in situ cell (CIS), which shows great similarity to fetal germ cells. It is therefore hypothesized that the CIS...... of epigenetic modifiers with a focus on jumonji C enzymes in the development of testicular dysgenesis and germ cell cancer in men....... cell is a fetal germ cell that has been arrested during development due to testicular dysgenesis. CIS cells retain a fetal and open chromatin structure, and recently several epigenetic modifiers have been suggested to be involved in testicular dysgenesis in mice. We here review the possible involvement...

Effect of Tree Phenology on LiDAR Measurement of Mediterranean Forest Structure

Directory of Open Access Journals (Sweden)

William Simonson

2018-04-01

Full Text Available Retrieval of forest biophysical properties using airborne LiDAR is known to differ between leaf-on and leaf-off states of deciduous trees, but much less is understood about the within-season effects of leafing phenology. Here, we compare two LiDAR surveys separated by just six weeks in spring, in order to assess whether LiDAR variables were influenced by canopy changes in Mediterranean mixed-oak woodlands at this time of year. Maximum and, to a slightly lesser extent, mean heights were consistently measured, whether for the evergreen cork oak (Quercus suber or semi-deciduous Algerian oak (Q. canariensis woodlands. Estimates of the standard deviation and skewness of height differed more strongly, especially for Algerian oaks which experienced considerable leaf expansion in the time period covered. Our demonstration of which variables are more or less affected by spring-time leafing phenology has important implications for analyses of both canopy and sub-canopy vegetation layers from LiDAR surveys.

Light and electron microscopic analyses of Vasa expression in adult germ cells of the fish medaka.

Science.gov (United States)

Yuan, Yongming; Li, Mingyou; Hong, Yunhan

2014-07-15

Germ cells of diverse animal species have a unique membrane-less organelle called germ plasm (GP). GP is usually associated with mitochondria and contains RNA binding proteins and mRNAs of germ genes such as vasa. GP has been described as the mitochondrial cloud (MC), intermitochondrial cement (IC) and chromatoid body (CB). The mechanism underlying varying GP structures has remained incompletely understood. Here we report the analysis of GP through light and electron microscopy by using Vasa as a marker in adult male germ cells of the fish medaka (Oryzias latipes). Immunofluorescence light microscopy revealed germ cell-specific Vasa expression. Vasa is the most abundant in mitotic germ cells (oogonia and spermatogonia) and reduced in meiotic germ cells. Vasa in round spermatids exist as a spherical structure reminiscent of CB. Nanogold immunoelectron microscopy revealed subcellular Vasa redistribution in male germ cells. Vasa in spermatogonia concentrates in small areas of the cytoplasm and is surrounded by mitochondria, which is reminiscent of MC. Vasa is intermixed with mitochondria to form IC in primary spermatocytes, appears as the free cement (FC) via separation from mitochondria in secondary spermatocyte and becomes condensed in CB at the caudal pole of round spermatids. During spermatid morphogenesis, Vasa redistributes and forms a second CB that is a ring-like structure surrounding the dense fiber of the flagellum in the midpiece. These structures resemble those described for GP in various species. Thus, Vasa identifies GP and adopts varying structures via dynamic reorganization at different stages of germ cell development. Copyright © 2014 Elsevier B.V. All rights reserved.

Performance Assessment of High Resolution Airborne Full Waveform LiDAR for Shallow River Bathymetry

Directory of Open Access Journals (Sweden)

Zhigang Pan

2015-04-01

Full Text Available We evaluate the performance of full waveform LiDAR decomposition algorithms with a high-resolution single band airborne LiDAR bathymetry system in shallow rivers. A continuous wavelet transformation (CWT is proposed and applied in two fluvial environments, and the results are compared to existing echo retrieval methods. LiDAR water depths are also compared to independent field measurements. In both clear and turbid water, the CWT algorithm outperforms the other methods if only green LiDAR observations are available. However, both the definition of the water surface, and the turbidity of the water significantly influence the performance of the LiDAR bathymetry observations. The results suggest that there is no single best full waveform processing algorithm for all bathymetric situations. Overall, the optimal processing strategies resulted in a determination of water depths with a 6 cm mean at 14 cm standard deviation for clear water, and a 16 cm mean and 27 cm standard deviation in more turbid water.

Germ Cell Tumor Located in the Midline of the Anterior Neck

OpenAIRE

Tatyana PIRDOPSKA; Ivan TERZIEV; Sv. HRISTOVA; W. MLADENOVSKY; R. PETKOV

2011-01-01

Primary germ cell tumors involving midline of the anterior neck are extremely rare. Here we report a 68-year-old male who was operated due to a mass lesion in the anterior neck with infiltration of the isthmus of the thyroid gland. Histopathological examination revealed a germ cell tumor with extragonadal localization in the anterior neck infiltrating the isthmus of the thyroid gland.

EXAMINATION OF THE GERM CELL CHIMERA FORMING POTENTIAL OF MOUSE EMBRYONIC STEM CELLS

Directory of Open Access Journals (Sweden)

V.B. CÂRSTEA

2007-05-01

Full Text Available The aim of this study was to examine the factors, which influence the chimeraforming potential of mouse embryonic stem cells (ES cells. In our work, we examinethe chimera producing ability of R1 and R1/E mouse ES cell lines. We found that thepassage number affects chimera-forming capability of the ES cells. With theincreasing of the passage number, it could be getting less chimera animal, and onlythe R1/E ES cell line derived cells could contribute to the germ cells. At first, wecompared the marker of pluripotency using immunostaining and RT PCR, but wecould not find any difference between the R1 and R1/E cell in this way. Atchromosome analysis, we found, that the number of aneuploid cells, in R1 ES cellline, dramatically increased after 10 passages. We thought that the reason is thatduring the cell division Y chromosome could not arrange correctly between the twonewly derived progeny cells. To prove our conception, we made X and YchromosomeFISH analyses. We found, that the aneuploid R1 and R1/E ES cellscontain only one X and one Y chromosome, so not the loss of Y chromosome causethe problem at the germ cell formation. At last, we made the karyotypeanalysis of R1 and R1/E ES cells at different passages. The karyotype analysisdemonstrated that in the case of R1 ES cell line, the 41 and 42-chromosomecontaining cells hold trisomy. With the increasing of the passages number, thenumber of trisomy containing aneuploid cells increased. The aneuploid ES cells cancontribute to the different tissuses of chimera animals, but cannot form viable germcells.

EXAMINATION OF THE GERM CELL CHIMERA FORMING POTENTIAL OF MOUSE EMBRYONIC STEM CELLS

Directory of Open Access Journals (Sweden)

CÂRSTEA V. B

2007-01-01

Full Text Available The aim of this study was to examine the factors, which influence the chimeraforming potential of mouse embryonic stem cells (ES cells. In our work, we examinethe chimera producing ability of R1 and R1/E mouse ES cell lines. We found that thepassage number affects chimera-forming capability of the ES cells. With theincreasing of the passage number, it could be getting less chimera animal, and onlythe R1/E ES cell line derived cells could contribute to the germ cells. At first, wecompared the marker of pluripotency using immunostaining and RT PCR, but wecould not find any difference between the R1 and R1/E cell in this way. Atchromosome analysis, we found, that the number of aneuploid cells, in R1 ES cellline, dramatically increased after 10 passages. We thought that the reason is thatduring the cell division Y chromosome could not arrange correctly between the twonewly derived progeny cells. To prove our conception, we made X and YchromosomeFISH analyses. We found, that the aneuploid R1 and R1/E ES cellscontain only one X and one Y chromosome, so not the loss of Y chromosome causethe problem at the germ cell formation. At last, we made the karyotypeanalysis of R1 and R1/E ES cells at different passages. The karyotype analysisdemonstrated that in the case of R1 ES cell line, the 41 and 42-chromosomecontaining cells hold trisomy. With the increasing of the passages number, thenumber of trisomy containing aneuploid cells increased. The aneuploid ES cells cancontribute to the different tissuses of chimera animals, but cannot form viable germcells.

2004 Federal Emergency Management Agency (FEMA) Bare Earth Topographic LiDAR: Connecticut River

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — LiDAR data is remotely sensed high-resolution elevation data collected by an airborne collection platform. The LiDAR files were converted from .PTS format to LAS...

Generation of germ cells in vitro in the era of induced pluripotent stem cells.

Science.gov (United States)

Imamura, Masanori; Hikabe, Orie; Lin, Zachary Yu-Ching; Okano, Hideyuki

2014-01-01

Induced pluripotent stem cells (iPSCs) are stem cells that can be artificially generated via "cellular reprogramming" using gene transduction in somatic cells. iPSCs have enormous potential in stem-cell biology as they can give rise to numerous cell lineages, including the three germ layers. An evaluation of germ-line competency by blastocyst injection or tetraploid complementation, however, is critical for determining the developmental potential of mouse iPSCs towards germ cells. Recent studies have demonstrated that primordial germ cells obtained by the in vitro differentiation of iPSCs produce functional gametes as well as healthy offspring. These findings illustrate not only that iPSCs are developmentally similar to embryonic stem cells (ESCs), but also that somatic cells from adult tissues can produce gametes in vitro, that is, if they are reprogrammed into iPSCs. In this review, we discuss past and recent advances in the in vitro differentiation of germ cells using pluripotent stem cells, with an emphasis on ESCs and iPSCs. While this field of research is still at a stage of infancy, it holds great promises for investigating the mechanisms of germ-cell development, especially in humans, and for advancing reproductive and developmental engineering technologies in the future. © 2013 Wiley Periodicals, Inc.

Ghrelin modulates testicular germ cells apoptosis and proliferation in adult normal rats

International Nuclear Information System (INIS)

Kheradmand, Arash; Dezfoulian, Omid; Alirezaei, Masoud; Rasoulian, Bahram

2012-01-01

Highlights: ► Spermatogenesis is closely associated with the balance between germ cells proliferation and apoptosis. ► Numerous studies have documented the direct action of ghrelin in the modulation of apoptosis in different cell types. ► Ghrelin may be considered as a modulator of spermatogenesis in normal adult rats. ► Ghrelin may be potentially implicated for abnormal spermatogenesis in some testicular germ cell tumors. -- Abstract: Under normal condition in the most mammals, spermatogenesis is closely associated with the balance between germ cells proliferation and apoptosis. The present study was designed to determine the effects of ghrelin treatment on in vivo quality and quantity expression of apoptosis and proliferation specific indices in rat testicular germ cells. Twenty eight adult normal rats were subdivided into equal control and treatment groups. Treatment group received 3 nmol of ghrelin as subcutaneous injection for 30 consecutive days or vehicle to the control animals. The rats from each group (n = 7) were killed on days 10 and 30 and their testes were taken for immunocytochemical evaluation and caspase-3 assay. Immunohistochemical analysis indicated that the accumulations of Bax and PCNA peptides are generally more prominent in spermatocytes and spermatogonia of both groups. Likewise, the mean percentage of immunoreactive spermatocytes against Bax increased (P 0.05). Upstream of Bax substance parallel to down-regulation of PCNA demonstrate that ghrelin may prevent massive accumulation of germ cells during normal spermatogenesis. These observations also indicate that ghrelin may be considered as a modulator of spermatogenesis in normal adult rats and could be potentially implicated for abnormal spermatogenesis in some testicular germ cell tumors.

Status and prospects for LiDAR remote sensing of forested ecosystems

Science.gov (United States)

M. A. Wulder; N. C. Coops; A. T. Hudak; F. Morsdorf; R. Nelson; G. Newnham; M. Vastaranta

2013-01-01

The science associated with the use of airborne and satellite Light Detection and Ranging (LiDAR) to remotely sense forest structure has rapidly progressed over the past decade. LiDAR has evolved from being a poorly understood, potentially useful tool to an operational technology in a little over a decade, and these instruments have become a major success story in...

Estimation of forest aboveground biomass and uncertainties by integration of field measurements, airborne LiDAR, and SAR and optical satellite data in Mexico.

Science.gov (United States)

Urbazaev, Mikhail; Thiel, Christian; Cremer, Felix; Dubayah, Ralph; Migliavacca, Mirco; Reichstein, Markus; Schmullius, Christiane

2018-02-21

Information on the spatial distribution of aboveground biomass (AGB) over large areas is needed for understanding and managing processes involved in the carbon cycle and supporting international policies for climate change mitigation and adaption. Furthermore, these products provide important baseline data for the development of sustainable management strategies to local stakeholders. The use of remote sensing data can provide spatially explicit information of AGB from local to global scales. In this study, we mapped national Mexican forest AGB using satellite remote sensing data and a machine learning approach. We modelled AGB using two scenarios: (1) extensive national forest inventory (NFI), and (2) airborne Light Detection and Ranging (LiDAR) as reference data. Finally, we propagated uncertainties from field measurements to LiDAR-derived AGB and to the national wall-to-wall forest AGB map. The estimated AGB maps (NFI- and LiDAR-calibrated) showed similar goodness-of-fit statistics (R 2 , Root Mean Square Error (RMSE)) at three different scales compared to the independent validation data set. We observed different spatial patterns of AGB in tropical dense forests, where no or limited number of NFI data were available, with higher AGB values in the LiDAR-calibrated map. We estimated much higher uncertainties in the AGB maps based on two-stage up-scaling method (i.e., from field measurements to LiDAR and from LiDAR-based estimates to satellite imagery) compared to the traditional field to satellite up-scaling. By removing LiDAR-based AGB pixels with high uncertainties, it was possible to estimate national forest AGB with similar uncertainties as calibrated with NFI data only. Since LiDAR data can be acquired much faster and for much larger areas compared to field inventory data, LiDAR is attractive for repetitive large scale AGB mapping. In this study, we showed that two-stage up-scaling methods for AGB estimation over large areas need to be analyzed and validated

Estimating forest structural characteristics using the airborne LiDAR scanning system and a near-real time profiling laser system

Science.gov (United States)

Zhao, Kaiguang

LiDAR (Light Detection and Ranging) directly measures canopy vertical structures, and provides an effective remote sensing solution to accurate and spatially-explicit mapping of forest characteristics, such as canopy height and Leaf Area Index. However, many factors, such as large data volume and high costs for data acquisition, precludes the operational and practical use of most currently available LiDARs for frequent and large-scale mapping. At the same time, a growing need is arising for real-time remote sensing platforms, e.g., to provide timely information for urgent applications. This study aims to develop an airborne profiling LiDAR system, featured with on-the-fly data processing, for near real- or real-time forest inventory. The development of such a system involves implementing the on-board data processing and analysis as well as building useful regression-based models to relate LiDAR measurements with forest biophysical parameters. This work established a paradigm for an on-the-fly airborne profiling LiDAR system to inventory regional forest resources in real- or near real-time. The system was developed based on an existing portable airborne laser system (PALS) that has been previously assembled at NASA by Dr. Ross Nelson. Key issues in automating PALS as an on-the-fly system were addressed, including the design of an archetype for the system workflow, the development of efficient and robust algorithms for automatic data processing and analysis, the development of effective regression models to predict forest biophysical parameters from LiDAR measurements, and the implementation of an integrated software package to incorporate all the above development. This work exploited the untouched potential of airborne laser profilers for real-time forest inventory, and therefore, documented an initial step toward developing airborne-laser-based, on-the-fly, real-time, forest inventory systems. Results from this work demonstrated the utility and effectiveness of

Patterns of Glycoconjugate Distribution during Molar Tooth Germ Development in Mice

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AR. Varasteh

2007-09-01

Full Text Available Objective: The aim of the present study was to evaluate the structure and distribution of Glycoconjugates during molar tooth germ development in mice.Materials and Methods: Sixteen tooth germs were obtained from BALB/c mice embryos 15 to 18 days post-gestation and fixed in 10% formalin. After routine tissue processing, 5μm sections were cut and stained with BSA1-B4 and PNA using the lectin histochemical method. All slides were evaluated by light microscopy.Results: Both lectins showed positive reaction in the tooth germ but with spatiotemporal differences. During bell stage, the reaction was strong with BSA1-B4 but moderate with PNA. Strong PNA uptake was observed in the odontoblastic and ameloblastic nuclei alongwith the apical cytoplasm of the ameloblasts.Conclusion: Although the lectins that were used in the present study recognize the same terminal sugar residue, they reacted with different disaccharide sequences with various penaltomer sugars. Therefore it may be assumed that the pattern of affinity for different parts of the developing tooth germ such as ameloblasts and odontoblasts is different in various lectins.

Neurl4 contributes to germ cell formation and integrity in Drosophila

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Jennifer Jones

2015-08-01

Full Text Available Primordial germ cells (PGCs form at the posterior pole of the Drosophila embryo, and then migrate to their final destination in the gonad where they will produce eggs or sperm. Studies of the different stages in this process, including assembly of germ plasm in the oocyte during oogenesis, specification of a subset of syncytial embryonic nuclei as PGCs, and migration, have been informed by genetic analyses. Mutants have defined steps in the process, and the identities of the affected genes have suggested biochemical mechanisms. Here we describe a novel PGC phenotype. When Neurl4 activity is reduced, newly formed PGCs frequently adopt irregular shapes and appear to bud off vesicles. PGC number is also reduced, an effect exacerbated by a separate role for Neurl4 in germ plasm formation during oogenesis. Like its mammalian homolog, Drosophila Neurl4 protein is concentrated in centrosomes and downregulates centrosomal protein CP110. Reducing CP110 activity suppresses the abnormal PGC morphology of Neurl4 mutants. These results extend prior analyses of Neurl4 in cultured cells, revealing a heightened requirement for Neurl4 in germ-line cells in Drosophila.

Defatted wheat germ application: Influence on cookies' properties with regard to its particle size and dough moisture content.

Science.gov (United States)

Petrović, Jovana; Rakić, Dušan; Fišteš, Aleksandar; Pajin, Biljana; Lončarević, Ivana; Tomović, Vladimir; Zarić, Danica

2017-10-01

The introduction of agro-food industry by-products rich in bioactive compounds represents major challenge in food industry sector. The influence of wheat germ particle size (Box-Behnken experimental design. The substitution of wheat flour with wheat germ increased the protein, fat, mineral, and fiber content of the cookies. The particle size of wheat germ affected the textural properties of cookies. As the particle size of wheat germ increased, the hardness of cookies decreased. The color of the cookie was most influenced by the interaction of dough moisture content and wheat germ particle size. Wheat germ level up to 15% had no significant effect on the sensory characteristics of cookies. A suitable combination of defatted wheat germ level, its particle size, and dough moisture content can improve the nutritional value of cookies, without causing a negative effect on the cookies' sensory characteristics.

Treatment Option Overview (Ovarian Germ Cell Tumors)

Science.gov (United States)

... Germ Cell Tumors Treatment (PDQ®)–Patient Version Treatment Option Overview Go to Health Professional Version Key Points ... and restore) the body’s blood cells. New treatment options Combination chemotherapy (the use of more than one ...

LiDAR (Terrain), THURSTON COUNTY, WASHINGTON, USA

Data.gov (United States)

Federal Emergency Management Agency, Department of Homeland Security — Fugro EarthData Company furnished the collection, processing, and development of LiDAR for 825 square miles in Washington (805 square miles of Thurston County and 20...

University of Dar es Salaam Library Journal - Vol 9, No 1 (2007)

African Journals Online (AJOL)

Gender Analysis Of Electronic Information Resource Use: The Case Of The University Of Dar Es Salaam, Tanzania · EMAIL FREE FULL TEXT EMAIL FREE FULL TEXT DOWNLOAD FULL ... A Bibliometric Study Of Research On Dar Es Salaam Region: 1980 To 2003 · EMAIL FREE FULL TEXT EMAIL FREE FULL TEXT

Don Germán

Directory of Open Access Journals (Sweden)

Juan Luis Mejía

1991-01-01

Full Text Available El veranillo de San Juan hace soportable el mediodía. Los "chorros d'oro" inundan de amarillo los antejardines del Prado. Las golondrinas veraneras invaden, al atardecer, los alrededores de la Biblioteca Departamental. Los voceadores de la suerte del paseo Bolívar claman a los cuatro vientos el número que cambiará su destino . Pero algo falta definitivamente en esta Barranquilla. De alguna manera la ciudad ya no es la misma. Falta Don Germán.

3D turbulence measurements using three intersecting Doppler LiDAR beams: validation against sonic anemometry

Science.gov (United States)

Carbajo Fuertes, Fernando; Valerio Iungo, Giacomo; Porté-Agel, Fernando

2013-04-01

Nowadays communities of researchers and industry in the wind engineering and meteorology sectors demand extensive and accurate measurements of atmospheric boundary layer turbulence for a better understanding of its role in a wide range of onshore and offshore applications: wind resource evaluation, wind turbine wakes, meteorology forecast, pollution and urban climate studies, etc. Atmospheric turbulence has been traditionally investigated through sonic anemometers installed on meteorological masts. However, the setup and maintenance of instrumented masts is generally very costly and the available location for the measurements is limited by the fixed position and height of the facility. In order to overcome the above-mentioned shortcomings, a measurement technique is proposed, based on the reconstruction of the three-dimensional velocity vector from simultaneous measurements of three intersecting Doppler wind LiDARs. This measuring technique presents the main advantage of being able to measure the wind velocity at any point in space inside a very large volume, which can be set and optimized for each test. Furthermore, it is very flexible regarding its transportation, installation and operation in any type of terrain. On the other hand, LiDAR measurements are strongly affected by the aerosol concentration in the air, precipitation, and the spatial and temporal resolution is poorer than that of a sonic anemometer. All this makes the comparison between these two kinds of measurements a complex task. The accuracy of the technique has been assessed by this study against sonic anemometer measurements carried out at different heights on the KNMI's meteorological mast at Cabauw's experimental site for atmospheric research (CESAR) in the Netherlands. An early uncertainty analysis shows that one of the most important parameters to be taken into account is the relative angles between the intersecting laser beams, i.e., the position of each LiDAR on the terrain and their

Mapping river bathymetry with a small footprint green LiDAR: Applications and challenges

Science.gov (United States)

Kinzel, Paul J.; Legleiter, Carl; Nelson, Jonathan M.

2013-01-01

Airborne bathymetric Light Detection And Ranging (LiDAR) systems designed for coastal and marine surveys are increasingly sought after for high-resolution mapping of fluvial systems. To evaluate the potential utility of bathymetric LiDAR for applications of this kind, we compared detailed surveys collected using wading and sonar techniques with measurements from the United States Geological Survey’s hybrid topographic⁄ bathymetric Experimental Advanced Airborne Research LiDAR (EAARL). These comparisons, based upon data collected from the Trinity and Klamath Rivers, California, and the Colorado River, Colorado, demonstrated

Stages of Childhood Extracranial Germ Cell Tumors

Science.gov (United States)

... tumors: Yolk sac tumors make a hormone called alpha-fetoprotein (AFP). They can form in the ovary, testicle, ... are used to detect extracranial germ cell tumors: Alpha-fetoprotein (AFP). Beta-human chorionic gonadotropin (β-hCG). For ...

2011-2013 Indiana Statewide Imagery and LiDAR Program: Lake Michigan Watershed Counties

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Indiana's Statewide LiDAR data is produced at 1.5-meter average post spacing for all 92 Indiana Counties covering more than 36,420 square miles. New LiDAR data was...

Malignant primary germ-cell tumor of the brain

International Nuclear Information System (INIS)

Yamamoto, Toyoshiro; Sato, Shinichi; Nakao, Satoshi; Ban, Sadahiko; Namba, Koh

1983-01-01

The unusual case of a 15 year old boy with three discrete paraventricular germ-cell tumors is reported.FThe first tumor was located just lateral to the left thalamus and included a massive cystic part around it, the second tumor in the paraventricular region above the head of the left caudate nucleus and the third tumor in the medial part of the left parietal lobe.FTotal removal of all tumors was successfully accomplished in stages at four separate operations, namely, the first tumor was removed through the left transsylvian approach, the second tumor via left superior frontal gyrus and the third tumor via left superior frontal gyrus and left superior parietal lobule.FHistological examination revealed that the first tumor was teratoma, the second was choriocarcinoma and the third was germinoma.FPrimary germ-cell tumors of the brain can be divided into 5 groups: 1) germinoma; 2) embryonal carcinoma; 3) choriocarcinoma; 4) yolk-sac tumor; or 5) teratoma.FIn this case, a combination of three different histological patterns was seen. If malignant germ-cell tumor is supected on CT, aggressive extirpation should be done, not only to determine the exact diagnosis, but also to provide the basis for subsequent adjunctive therapy. (author)

Radiation Therapy of Suprasellar Germ Cell Tumors

International Nuclear Information System (INIS)

Park, Woo Yoon; Choi, Doo Ho; Choi, Eun Kyung; Kim, Il Han; Ha, Sung Whan; Park, Charn Il

1988-01-01

A retrospective study was performed on 15 patients with suprasellar germ cell tumors treated by megavoltage external beam irradiation between Feb. 1979 and Dec. 1985. Follow-up period of survivors was 30 to 91 months. Histologic diagnosis was obtained before radiation therapy in 10 patients (9 germinomas and 1 mixed). Five patients were treated without histologic verification. In 9 patients with biopsy-proven germinomas radiation therapy was delivered to the craniospinal axis in 6, to the whole brain in 3. In 5 patients with mixed germ cell tumor or elevated tumor marker, irradiation was delivered to the craniospinal axis in 2, to the whole brain in 2, and to the primary site only in 1. Total doses ranged from 5,000 to 5,500 cGy to the primary site, 3,000 to 4,400 cGy to the whole brain, and 1,300 to 3,000 cGy to the spine. In these 14, local tumor was controlled and primary or spinal failure was not observed. One patient without elevated tumor marker was treated to the whole brain, The tumor was not controlled and he had spinal recurrence. It is proven that radiation therapy is an effective treatment for suprasellar germ cell tumors. The neuroendocrinologic presentation, tumor marker status, early response to radiation measured on CT seem to be useful means for selecting patients for radiation therapy when tissue diagnosis is not available

Investigating the Potential of Using the Spatial and Spectral Information of Multispectral LiDAR for Object Classification

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Wei Gong

2015-09-01

Full Text Available The abilities of multispectral LiDAR (MSL as a new high-potential active instrument for remote sensing have not been fully revealed. This study demonstrates the potential of using the spectral and spatial features derived from a novel MSL to discriminate surface objects. Data acquired with the MSL include distance information and the intensities of four wavelengths at 556, 670, 700, and 780 nm channels. A support vector machine was used to classify diverse objects in the experimental scene into seven types: wall, ceramic pots, Cactaceae, carton, plastic foam block, and healthy and dead leaves of E. aureum. Different features were used during classification to compare the performance of different detection systems. The spectral backscattered reflectance of one wavelength and distance represented the features from an equivalent single-wavelength LiDAR system; reflectance of the four wavelengths represented the features from an equivalent multispectral image with four bands. Results showed that the overall accuracy of using MSL data was as high as 88.7%, this value was 9.8%–39.2% higher than those obtained using a single-wavelength LiDAR, and 4.2% higher than for multispectral image.

Anti-Inflammatory Activity of Citric Acid-Treated Wheat Germ Extract in Lipopolysaccharide-Stimulated Macrophages.

Science.gov (United States)

Jeong, Hee-Yeong; Choi, Yong-Seok; Lee, Jae-Kang; Lee, Beom-Joon; Kim, Woo-Ki; Kang, Hee

2017-07-10

Until recently, fermentation was the only processing used to improve the functionality of wheat germ. The release of 2,6-dimethoxy-1,4-benzoquinone (DMBQ) from hydroquinone glycosides during the fermentation process is considered a marker of quality control. Here, we treated wheat germ extract with citric acid (CWG) to release DMBQ and examined the anti-inflammatory activity of this extract using a lipopolysaccharide-activated macrophage model. Treatment of wheat germ with citric acid resulted in detectable release of DMBQ but reduced total phenolic and total flavonoid contents compared with untreated wheat germ extract (UWG). CWG inhibited secretion of the pro-inflammatory cytokines tumor necrosis factor-α, interleukin (IL)-6, and IL-12 and the synthesis of cyclooxygenase-2, while UWG only decreased IL-12 production. CWG and UWG induced high levels of anti-inflammatory IL-10 and heme oxygenase-1. CWG specifically inhibited phosphorylation of NF-κB p65 and p38 kinase at 15 min after LPS stimulation. Our study showed that citric acid treatment enhanced the anti-inflammatory activity of wheat germ extract.

2009 PSLC-USGS Topographic LiDAR: Wenatchee

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Watershed Sciences, Inc. (WS) collected Light Detection and Ranging (LiDAR) data of the Wenatchee USGS area of interest (AOI) east of Wenatchee, WA on May 1nd - May...

The impact of atmospheric cold plasma treatment on inactivation of lipase and lipoxygenase of wheat germs

DEFF Research Database (Denmark)

Tolouie, Haniye; Mohammadifar, Mohammad Amin; Ghomi, Hamid

2018-01-01

Wheat germ is a by-product of milling process which contains large amount of nutrients. The shelf life of wheat germ could improve by inactivation of destructive endogenous enzymes especially lipase and lipoxygenase. In this work, the impact of atmospheric cold plasma treatment on the inactivation...... of lipase and lipoxygenase enzymes of wheat germ was studied. Dielectric barrier discharge plasma was utilized to treat wheat germs. The impact of treatment time and voltage of plasma on the inactivation of lipase and lipoxygenase were investigated as well. The higher voltage and treatment time led...

Registration of Aerial Optical Images with LiDAR Data Using the Closest Point Principle and Collinearity Equations.

Science.gov (United States)

Huang, Rongyong; Zheng, Shunyi; Hu, Kun

2018-06-01

Registration of large-scale optical images with airborne LiDAR data is the basis of the integration of photogrammetry and LiDAR. However, geometric misalignments still exist between some aerial optical images and airborne LiDAR point clouds. To eliminate such misalignments, we extended a method for registering close-range optical images with terrestrial LiDAR data to a variety of large-scale aerial optical images and airborne LiDAR data. The fundamental principle is to minimize the distances from the photogrammetric matching points to the terrestrial LiDAR data surface. Except for the satisfactory efficiency of about 79 s per 6732 × 8984 image, the experimental results also show that the unit weighted root mean square (RMS) of the image points is able to reach a sub-pixel level (0.45 to 0.62 pixel), and the actual horizontal and vertical accuracy can be greatly improved to a high level of 1/4⁻1/2 (0.17⁻0.27 m) and 1/8⁻1/4 (0.10⁻0.15 m) of the average LiDAR point distance respectively. Finally, the method is proved to be more accurate, feasible, efficient, and practical in variety of large-scale aerial optical image and LiDAR data.

LiDAR-IMU Time Delay Calibration Based on Iterative Closest Point and Iterated Sigma Point Kalman Filter.

Science.gov (United States)

Liu, Wanli

2017-03-08

The time delay calibration between Light Detection and Ranging (LiDAR) and Inertial Measurement Units (IMUs) is an essential prerequisite for its applications. However, the correspondences between LiDAR and IMU measurements are usually unknown, and thus cannot be computed directly for the time delay calibration. In order to solve the problem of LiDAR-IMU time delay calibration, this paper presents a fusion method based on iterative closest point (ICP) and iterated sigma point Kalman filter (ISPKF), which combines the advantages of ICP and ISPKF. The ICP algorithm can precisely determine the unknown transformation between LiDAR-IMU; and the ISPKF algorithm can optimally estimate the time delay calibration parameters. First of all, the coordinate transformation from the LiDAR frame to the IMU frame is realized. Second, the measurement model and time delay error model of LiDAR and IMU are established. Third, the methodology of the ICP and ISPKF procedure is presented for LiDAR-IMU time delay calibration. Experimental results are presented that validate the proposed method and demonstrate the time delay error can be accurately calibrated.

Preliminary Study on Testicular Germ Cell Transplantation of Endemic Species Oryzias celebensis

Science.gov (United States)

Andriani, I.; Agustiani, F.; Hassan, M.; Parenrengi, A.; Inoue, K.

2018-03-01

The research has been conducted to study some technical steps for male germ-plasm from endemic fish species such as some species of Oryzias fish in Indonesia to preserve and propagate through germ cell transplantation technology. For preliminary research, the study was started with germ cell characterization of testes, cryopreservation of TGC and the transplantation of Oryzias celebensis as candidates for surrogate broodstock of Oryzias fish male germ plasm. The data analized included the potential number of TGC as donor, the viability of cryopreserved TGC in two types of cryoprotectans and the survival rate of O.celebensis larvae as recipient after transplantation. The result showed that the average amount of TGC yielded after dissociation was 131000 ± 31349 with 74.2 % viability of TGC each. Cryoprotectan10% DMSO +glucose yielded higher viable of TGC. More than 80 % of O.celebensis larvae survived after transplantation. In conclusion, these preliminary data of O.celebensis as surrogate broodstock candidate will support the application of TGC transplantation technology in Oryzias endemic species.

Clinical use of serum TRA-1-60 as tumor marker in patients with germ cell cancer

DEFF Research Database (Denmark)

Lajer, Henrik; Daugaard, Gedske; Andersson, Anna-Maria

2002-01-01

TRA-1-60 antigen has been related to the presence of embryonal germ cell carcinoma (EC) and carcinoma in situ. Our study further investigated the clinical efficacy of TRA-1-60 as a serum tumor marker for germ cell cancer in the testis. Three groups of patients with germ cell tumors were included:...

DNA methylation profiling of embryonic stem cell differentiation into the three germ layers.

Science.gov (United States)

Isagawa, Takayuki; Nagae, Genta; Shiraki, Nobuaki; Fujita, Takanori; Sato, Noriko; Ishikawa, Shumpei; Kume, Shoen; Aburatani, Hiroyuki

2011-01-01

Embryogenesis is tightly regulated by multiple levels of epigenetic regulation such as DNA methylation, histone modification, and chromatin remodeling. DNA methylation patterns are erased in primordial germ cells and in the interval immediately following fertilization. Subsequent developmental reprogramming occurs by de novo methylation and demethylation. Variance in DNA methylation patterns between different cell types is not well understood. Here, using methylated DNA immunoprecipitation and tiling array technology, we have comprehensively analyzed DNA methylation patterns at proximal promoter regions in mouse embryonic stem (ES) cells, ES cell-derived early germ layers (ectoderm, endoderm and mesoderm) and four adult tissues (brain, liver, skeletal muscle and sperm). Most of the methylated regions are methylated across all three germ layers and in the three adult somatic tissues. This commonly methylated gene set is enriched in germ cell-associated genes that are generally transcriptionally inactive in somatic cells. We also compared DNA methylation patterns by global mapping of histone H3 lysine 4/27 trimethylation, and found that gain of DNA methylation correlates with loss of histone H3 lysine 4 trimethylation. Our combined findings indicate that differentiation of ES cells into the three germ layers is accompanied by an increased number of commonly methylated DNA regions and that these tissue-specific alterations in methylation occur for only a small number of genes. DNA methylation at the proximal promoter regions of commonly methylated genes thus appears to be an irreversible mark which functions to fix somatic lineage by repressing the transcription of germ cell-specific genes.

An Easy-to-Use Airborne LiDAR Data Filtering Method Based on Cloth Simulation

Directory of Open Access Journals (Sweden)

Wuming Zhang

2016-06-01

Full Text Available Separating point clouds into ground and non-ground measurements is an essential step to generate digital terrain models (DTMs from airborne LiDAR (light detection and ranging data. However, most filtering algorithms need to carefully set up a number of complicated parameters to achieve high accuracy. In this paper, we present a new filtering method which only needs a few easy-to-set integer and Boolean parameters. Within the proposed approach, a LiDAR point cloud is inverted, and then a rigid cloth is used to cover the inverted surface. By analyzing the interactions between the cloth nodes and the corresponding LiDAR points, the locations of the cloth nodes can be determined to generate an approximation of the ground surface. Finally, the ground points can be extracted from the LiDAR point cloud by comparing the original LiDAR points and the generated surface. Benchmark datasets provided by ISPRS (International Society for Photogrammetry and Remote Sensing working Group III/3 are used to validate the proposed filtering method, and the experimental results yield an average total error of 4.58%, which is comparable with most of the state-of-the-art filtering algorithms. The proposed easy-to-use filtering method may help the users without much experience to use LiDAR data and related technology in their own applications more easily.

A 3D convolutional neural network approach to land cover classification using LiDAR and multi-temporal Landsat imagery

Science.gov (United States)

Xu, Z.; Guan, K.; Peng, B.; Casler, N. P.; Wang, S. W.

2017-12-01

Landscape has complex three-dimensional features. These 3D features are difficult to extract using conventional methods. Small-footprint LiDAR provides an ideal way for capturing these features. Existing approaches, however, have been relegated to raster or metric-based (two-dimensional) feature extraction from the upper or bottom layer, and thus are not suitable for resolving morphological and intensity features that could be important to fine-scale land cover mapping. Therefore, this research combines airborne LiDAR and multi-temporal Landsat imagery to classify land cover types of Williamson County, Illinois that has diverse and mixed landscape features. Specifically, we applied a 3D convolutional neural network (CNN) method to extract features from LiDAR point clouds by (1) creating occupancy grid, intensity grid at 1-meter resolution, and then (2) normalizing and incorporating data into a 3D CNN feature extractor for many epochs of learning. The learned features (e.g., morphological features, intensity features, etc) were combined with multi-temporal spectral data to enhance the performance of land cover classification based on a Support Vector Machine classifier. We used photo interpretation for training and testing data generation. The classification results show that our approach outperforms traditional methods using LiDAR derived feature maps, and promises to serve as an effective methodology for creating high-quality land cover maps through fusion of complementary types of remote sensing data.

Reduction of the number of germs in spices by radappertization

International Nuclear Information System (INIS)

Beczner, Laszlone; Kiss, Istvan

1983-01-01

The sterilization by fumigation with ethylene oxide and propylene oxide of ground paprika and spice mixtures used in preserves and meat industry was compared with the radappertization of the same spices. The number of germs including that of spores and moulds was determined. It can be established that irradiation with ionizing radiation (5 kGy) has the same effect on the reduction of the number of germs as sterilization by ethylene oxide. In addition, the side effects of sterilization can be avoided. (V.N.)

Quantifying aboveground forest carbon pools and fluxes from repeat LiDAR surveys

Science.gov (United States)

Andrew T. Hudak; Eva K. Strand; Lee A. Vierling; John C. Byrne; Jan U. H. Eitel; Sebastian Martinuzzi; Michael J. Falkowski

2012-01-01

Sound forest policy and management decisions to mitigate rising atmospheric CO2 depend upon accurate methodologies to quantify forest carbon pools and fluxes over large tracts of land. LiDAR remote sensing is a rapidly evolving technology for quantifying aboveground biomass and thereby carbon pools; however, little work has evaluated the efficacy of repeat LiDAR...

Germ cell specification and ovary structure in the rotifer Brachionus plicatilis.

Science.gov (United States)

Smith, James M; Cridge, Andrew G; Dearden, Peter K

2010-08-02

The segregation of the germline from somatic tissues is an essential process in the development of all animals. Specification of the primordial germ cells (PGCs) takes place via different strategies across animal phyla; either specified early in embryogenesis by the inheritance of maternal determinants in the cytoplasm of the oocyte ('preformation') or selected later in embryonic development from undifferentiated precursors by a localized inductive signal ('epigenesis'). Here we investigate the specification and development of the germ cells in the rotifer Brachionus plicatilis, a member of the poorly-characterized superphyla Lophotrochozoa, by isolating the Brachionus homologues of the conserved germ cell markers vasa and nanos, and examining their expression using in situ hybridization. Bpvasa and Bpnos RNA expression have very similar distributions in the Brachionus ovary, showing ubiquitous expression in the vitellarium, with higher levels in the putative germ cell cluster. Bpvas RNA expression is present in freshly laid eggs, remaining ubiquitous in embryos until at least the 96 cell stage after which expression narrows to a small cluster of cells at the putative posterior of the embryo, consistent with the developing ovary. Bpnos RNA expression is also present in just-laid eggs but expression is much reduced by the four-cell stage and absent by the 16-cell stage. Shortly before hatching of the juvenile rotifer from the egg, Bpnos RNA expression is re-activated, located in a subset of posterior cells similar to those expressing Bpvas at the same stage. The observed expression of vasa and nanos in the developing B. plicatilis embryo implies an epigenetic origin of primordial germ cells in Rotifer.

Germ cell specification and ovary structure in the rotifer Brachionus plicatilis

Directory of Open Access Journals (Sweden)

Smith James M

2010-08-01

Full Text Available Abstract Background The segregation of the germline from somatic tissues is an essential process in the development of all animals. Specification of the primordial germ cells (PGCs takes place via different strategies across animal phyla; either specified early in embryogenesis by the inheritance of maternal determinants in the cytoplasm of the oocyte ('preformation' or selected later in embryonic development from undifferentiated precursors by a localized inductive signal ('epigenesis'. Here we investigate the specification and development of the germ cells in the rotifer Brachionus plicatilis, a member of the poorly-characterized superphyla Lophotrochozoa, by isolating the Brachionus homologues of the conserved germ cell markers vasa and nanos, and examining their expression using in situ hybridization. Results Bpvasa and Bpnos RNA expression have very similar distributions in the Brachionus ovary, showing ubiquitous expression in the vitellarium, with higher levels in the putative germ cell cluster. Bpvas RNA expression is present in freshly laid eggs, remaining ubiquitous in embryos until at least the 96 cell stage after which expression narrows to a small cluster of cells at the putative posterior of the embryo, consistent with the developing ovary. Bpnos RNA expression is also present in just-laid eggs but expression is much reduced by the four-cell stage and absent by the 16-cell stage. Shortly before hatching of the juvenile rotifer from the egg, Bpnos RNA expression is re-activated, located in a subset of posterior cells similar to those expressing Bpvas at the same stage. Conclusions The observed expression of vasa and nanos in the developing B. plicatilis embryo implies an epigenetic origin of primordial germ cells in Rotifer.

Rapid, high-resolution measurement of leaf area and leaf orientation using terrestrial LiDAR scanning data

International Nuclear Information System (INIS)

Bailey, Brian N; Mahaffee, Walter F

2017-01-01

The rapid evolution of high performance computing technology has allowed for the development of extremely detailed models of the urban and natural environment. Although models can now represent sub-meter-scale variability in environmental geometry, model users are often unable to specify the geometry of real domains at this scale given available measurements. An emerging technology in this field has been the use of terrestrial LiDAR scanning data to rapidly measure the three-dimensional geometry of trees, such as the distribution of leaf area. However, current LiDAR methods suffer from the limitation that they require detailed knowledge of leaf orientation in order to translate projected leaf area into actual leaf area. Common methods for measuring leaf orientation are often tedious or inaccurate, which places constraints on the LiDAR measurement technique. This work presents a new method to simultaneously measure leaf orientation and leaf area within an arbitrarily defined volume using terrestrial LiDAR data. The novelty of the method lies in the direct measurement of the fraction of projected leaf area G from the LiDAR data which is required to relate projected leaf area to total leaf area, and in the new way in which radiation transfer theory is used to calculate leaf area from the LiDAR data. The method was validated by comparing LiDAR-measured leaf area to (1) ‘synthetic’ or computer-generated LiDAR data where the exact area was known, and (2) direct measurements of leaf area in the field using destructive sampling. Overall, agreement between the LiDAR and reference measurements was very good, showing a normalized root-mean-squared-error of about 15% for the synthetic tests, and 13% in the field. (paper)

N-cadherin Expression in Testicular Germ Cell and Gonadal Stromal Tumors

Directory of Open Access Journals (Sweden)

Daniel J. Heidenberg, Joel H. Barton, Denise Young, Michael Grinkemeyer, Isabell A. Sesterhenn

2012-01-01

Full Text Available Neural-cadherin is a member of the cadherin gene family encoding the N-cadherin protein that mediates cell adhesion. N-cadherin is a marker of Sertoli cells and is also expressed in germ cells of varying stages of maturation. The purpose of this study was to determine the presence and distribution of this protein by immunohistochemistry in 105 germ cell tumors of both single and mixed histological types and 12 gonadal stromal tumors. Twenty-four germ cell tumors consisted of one cell type and the remaining were mixed. Of the 23 seminomas in either pure or mixed tumors, 74% were positive. Two spermatocytic seminomas were positive. Of the 83 cases with yolk sac tumor, 99% were positive for N-cadherin. The teratomas were positive in 73% in neuroectodermal and / or glandular components. In contrast, 87% of embryonal carcinomas did not express N-cadherin. Only 17% of the syncytiotrophoblastic cells were positive for N-cadherin. In conclusion, N-cadherin expression is very helpful in the identification of yolk sac tumors. In addition to glypican-3 and Sal-like protein 4, N-cadherin can be beneficial for the diagnosis and classification of this subtype of testicular germ cell tumor. Nine of the 12 gonadal stromal tumors were positive to a variable extent.

Ghrelin modulates testicular germ cells apoptosis and proliferation in adult normal rats

Energy Technology Data Exchange (ETDEWEB)

Kheradmand, Arash, E-mail: arashkheradmand@yahoo.com [Department of Clinical Sciences, School of Veterinary Medicine, Lorestan University, P.O. Box: 465, Khorram Abad (Iran, Islamic Republic of); Dezfoulian, Omid [Department of Pathobiology, School of Veterinary Medicine, Lorestan University, Khorram Abad (Iran, Islamic Republic of); Alirezaei, Masoud [Division of Biochemistry, School of Veterinary Medicine, Lorestan University, P.O. Box: 465, Khorram Abad (Iran, Islamic Republic of); Rasoulian, Bahram [Razi Herbal Medicine Research Center, Lorestan University of Medical Sciences, Khorram Abad (Iran, Islamic Republic of)

2012-03-09

Highlights: Black-Right-Pointing-Pointer Spermatogenesis is closely associated with the balance between germ cells proliferation and apoptosis. Black-Right-Pointing-Pointer Numerous studies have documented the direct action of ghrelin in the modulation of apoptosis in different cell types. Black-Right-Pointing-Pointer Ghrelin may be considered as a modulator of spermatogenesis in normal adult rats. Black-Right-Pointing-Pointer Ghrelin may be potentially implicated for abnormal spermatogenesis in some testicular germ cell tumors. -- Abstract: Under normal condition in the most mammals, spermatogenesis is closely associated with the balance between germ cells proliferation and apoptosis. The present study was designed to determine the effects of ghrelin treatment on in vivo quality and quantity expression of apoptosis and proliferation specific indices in rat testicular germ cells. Twenty eight adult normal rats were subdivided into equal control and treatment groups. Treatment group received 3 nmol of ghrelin as subcutaneous injection for 30 consecutive days or vehicle to the control animals. The rats from each group (n = 7) were killed on days 10 and 30 and their testes were taken for immunocytochemical evaluation and caspase-3 assay. Immunohistochemical analysis indicated that the accumulations of Bax and PCNA peptides are generally more prominent in spermatocytes and spermatogonia of both groups. Likewise, the mean percentage of immunoreactive spermatocytes against Bax increased (P < 0.01) in the ghrelin-treated group on day 10, while despite of 30% increment in the Bax level of spermatocytes in the treated rats on day 30, however, it was not statistically significant. During the experimental period, only a few spermatogonia represented Bax expression and the changes of Bax immunolabling cells were negligible upon ghrelin treatment. Likewise, there were immunostaining cells against Bcl-2 in each germ cell neither in the control nor in the treated animals. In fact

Development and mapping of DArT markers within the Festuca - Lolium complex

Science.gov (United States)

Kopecký, David; Bartoš, Jan; Lukaszewski, Adam J; Baird, James H; Černoch, Vladimír; Kölliker, Roland; Rognli, Odd Arne; Blois, Helene; Caig, Vanessa; Lübberstedt, Thomas; Studer, Bruno; Shaw, Paul; Doležel, Jaroslav; Kilian, Andrzej

2009-01-01

Background Grasses are among the most important and widely cultivated plants on Earth. They provide high quality fodder for livestock, are used for turf and amenity purposes, and play a fundamental role in environment protection. Among cultivated grasses, species within the Festuca-Lolium complex predominate, especially in temperate regions. To facilitate high-throughput genome profiling and genetic mapping within the complex, we have developed a Diversity Arrays Technology (DArT) array for five grass species: F. pratensis, F. arundinacea, F. glaucescens, L. perenne and L. multiflorum. Results The DArTFest array contains 7680 probes derived from methyl-filtered genomic representations. In a first marker discovery experiment performed on 40 genotypes from each species (with the exception of F. glaucescens for which only 7 genotypes were used), we identified 3884 polymorphic markers. The number of DArT markers identified in every single genotype varied from 821 to 1852. To test the usefulness of DArTFest array for physical mapping, DArT markers were assigned to each of the seven chromosomes of F. pratensis using single chromosome substitution lines while recombinants of F. pratensis chromosome 3 were used to allocate the markers to seven chromosome bins. Conclusion The resources developed in this project will facilitate the development of genetic maps in Festuca and Lolium, the analysis on genetic diversity, and the monitoring of the genomic constitution of the Festuca × Lolium hybrids. They will also enable marker-assisted selection for multiple traits or for specific genome regions. PMID:19832973

Localized Segment Based Processing for Automatic Building Extraction from LiDAR Data

Science.gov (United States)

Parida, G.; Rajan, K. S.

2017-05-01

The current methods of object segmentation and extraction and classification of aerial LiDAR data is manual and tedious task. This work proposes a technique for object segmentation out of LiDAR data. A bottom-up geometric rule based approach was used initially to devise a way to segment buildings out of the LiDAR datasets. For curved wall surfaces, comparison of localized surface normals was done to segment buildings. The algorithm has been applied to both synthetic datasets as well as real world dataset of Vaihingen, Germany. Preliminary results show successful segmentation of the buildings objects from a given scene in case of synthetic datasets and promissory results in case of real world data. The advantages of the proposed work is non-dependence on any other form of data required except LiDAR. It is an unsupervised method of building segmentation, thus requires no model training as seen in supervised techniques. It focuses on extracting the walls of the buildings to construct the footprint, rather than focussing on roof. The focus on extracting the wall to reconstruct the buildings from a LiDAR scene is crux of the method proposed. The current segmentation approach can be used to get 2D footprints of the buildings, with further scope to generate 3D models. Thus, the proposed method can be used as a tool to get footprints of buildings in urban landscapes, helping in urban planning and the smart cities endeavour.

LOCALIZED SEGMENT BASED PROCESSING FOR AUTOMATIC BUILDING EXTRACTION FROM LiDAR DATA

Directory of Open Access Journals (Sweden)

G. Parida

2017-05-01

Full Text Available The current methods of object segmentation and extraction and classification of aerial LiDAR data is manual and tedious task. This work proposes a technique for object segmentation out of LiDAR data. A bottom-up geometric rule based approach was used initially to devise a way to segment buildings out of the LiDAR datasets. For curved wall surfaces, comparison of localized surface normals was done to segment buildings. The algorithm has been applied to both synthetic datasets as well as real world dataset of Vaihingen, Germany. Preliminary results show successful segmentation of the buildings objects from a given scene in case of synthetic datasets and promissory results in case of real world data. The advantages of the proposed work is non-dependence on any other form of data required except LiDAR. It is an unsupervised method of building segmentation, thus requires no model training as seen in supervised techniques. It focuses on extracting the walls of the buildings to construct the footprint, rather than focussing on roof. The focus on extracting the wall to reconstruct the buildings from a LiDAR scene is crux of the method proposed. The current segmentation approach can be used to get 2D footprints of the buildings, with further scope to generate 3D models. Thus, the proposed method can be used as a tool to get footprints of buildings in urban landscapes, helping in urban planning and the smart cities endeavour.

Prenatal ultrasound and postmortem histologic evaluation of tooth germs: an observational, transversal study.

Science.gov (United States)

Seabra, Mariana; Felino, António; Nogueira, Rosete; Valente, Francisco; Braga, Ana Cristina; Vaz, Paula

2015-05-12

Hypodontia is the most frequent developmental anomaly of the orofacial complex, and its detection in prenatal ultrasound may indicate the presence of congenital malformations, genetic syndromes and chromosomal abnormalities. To date, only a few studies have evaluated the histological relationship of human tooth germs identified by two-dimensional (2D) ultrasonography. In order to analyze whether two-dimensional ultrasonography of tooth germs may be successfully used for identifying genetic syndromes, prenatal ultrasound images of fetal tooth germs obtained from a Portuguese population sample were compared with histological images obtained from fetal autopsies. Observational, descriptive, transversal study. The study protocol followed the ethical principles outlined by the Helsinki Declaration and was approved by the Ethics Committee of the School of Dental Medicine, University of Porto (FMDUP, Porto, Portugal) and of the Centro Hospitalar de Vila Nova de Gaia/Espinho (CHVNG/EPE, Porto, Portugal) as well as by the CGC Genetics Embryofetal Pathology Laboratory. Eighty-five fetuses examined by prenatal ultrasound screening from May 2011 to August 2012 had an indication for autopsy following spontaneous fetal death or medical termination of pregnancy. Of the 85 fetuses, 37 (43.5%) were randomly selected for tooth germ evaluation by routine histopathological analysis. Fetuses who were up to 30 weeks of gestation, and whose histological pieces were not representative of all maxillary tooth germs was excluded. Twenty four fetus between the 13(th) and 30(th) weeks of gestation fulfilled the parameters to autopsy. Twenty four fetuses were submitted to histological evaluation and were determined the exact number, morphology, and mineralization of their tooth germs. All tooth germs were identifiable with ultrasonography as early as the 13(th) week of gestation. Of the fetuses autopsied, 41.7% had hypodontia (29.1% maxillary hypodontia and 20.9% mandibular hypodontia). This

Multispectral LiDAR Data for Land Cover Classification of Urban Areas

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Salem Morsy

2017-04-01

Full Text Available Airborne Light Detection And Ranging (LiDAR systems usually operate at a monochromatic wavelength measuring the range and the strength of the reflected energy (intensity from objects. Recently, multispectral LiDAR sensors, which acquire data at different wavelengths, have emerged. This allows for recording of a diversity of spectral reflectance from objects. In this context, we aim to investigate the use of multispectral LiDAR data in land cover classification using two different techniques. The first is image-based classification, where intensity and height images are created from LiDAR points and then a maximum likelihood classifier is applied. The second is point-based classification, where ground filtering and Normalized Difference Vegetation Indices (NDVIs computation are conducted. A dataset of an urban area located in Oshawa, Ontario, Canada, is classified into four classes: buildings, trees, roads and grass. An overall accuracy of up to 89.9% and 92.7% is achieved from image classification and 3D point classification, respectively. A radiometric correction model is also applied to the intensity data in order to remove the attenuation due to the system distortion and terrain height variation. The classification process is then repeated, and the results demonstrate that there are no significant improvements achieved in the overall accuracy.

Multispectral LiDAR Data for Land Cover Classification of Urban Areas.

Science.gov (United States)

Morsy, Salem; Shaker, Ahmed; El-Rabbany, Ahmed

2017-04-26

Airborne Light Detection And Ranging (LiDAR) systems usually operate at a monochromatic wavelength measuring the range and the strength of the reflected energy (intensity) from objects. Recently, multispectral LiDAR sensors, which acquire data at different wavelengths, have emerged. This allows for recording of a diversity of spectral reflectance from objects. In this context, we aim to investigate the use of multispectral LiDAR data in land cover classification using two different techniques. The first is image-based classification, where intensity and height images are created from LiDAR points and then a maximum likelihood classifier is applied. The second is point-based classification, where ground filtering and Normalized Difference Vegetation Indices (NDVIs) computation are conducted. A dataset of an urban area located in Oshawa, Ontario, Canada, is classified into four classes: buildings, trees, roads and grass. An overall accuracy of up to 89.9% and 92.7% is achieved from image classification and 3D point classification, respectively. A radiometric correction model is also applied to the intensity data in order to remove the attenuation due to the system distortion and terrain height variation. The classification process is then repeated, and the results demonstrate that there are no significant improvements achieved in the overall accuracy.

Anti-diabetic drugs in the private and public sector in Dar es Salaam ...

African Journals Online (AJOL)

Objectives: To compare availability, cost, affordability and sources of anti-diabetic drugs between private and public health facilities in Dar es Salaam, Tanzania. Design: Cross sectional descriptive study. Setting: Diabetic clinics in private and public health facilities in Dar es Salaam, Tanzania. Subjects: Eighty patients ...

2007 US Army Corps of Engineers (USACE), Jacksonville District US Virgin Islands LiDAR

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This Light Detection and Ranging (LiDAR) bare-earth classified LAS dataset is a topographic survey conducted for the USACE USVI LiDAR Project. These data were...

Molecular biology of testicular germ cell tumors.

Science.gov (United States)

Gonzalez-Exposito, R; Merino, M; Aguayo, C

2016-06-01

Testicular germ cell tumors (TGCTs) are the most common solid tumors in young adult men. They constitute a unique pathology because of their embryonic and germ origin and their special behavior. Genetic predisposition, environmental factors involved in their development and genetic aberrations have been under study in many works throughout the last years trying to explain the susceptibility and the transformation mechanism of TGCTs. Despite the high rate of cure in this type of tumors because its particular sensitivity to cisplatin, there are tumors resistant to chemotherapy for which it is needed to find new therapies. In the present work, it has been carried out a literature review on the most important molecular aspects involved in the onset and development of such tumors, as well as a review of the major developments regarding prognostic factors, new prognostic biomarkers and the possibility of new targeted therapies.

Childhood Central Nervous System Germ Cell Tumors Treatment (PDQ®)—Health Professional Version

Science.gov (United States)

CNS germ cell tumors can be diagnosed and classified based on histology, tumor markers, or a combination of both. Get detailed information about newly diagnosed and recurrent childhood CNS germ cell tumors including molecular features and clinical features, diagnostic and staging evaluation, and treatment in this summary for clinicians.

Parallel Landscape Driven Data Reduction & Spatial Interpolation Algorithm for Big LiDAR Data

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Rahil Sharma

2016-06-01

Full Text Available Airborne Light Detection and Ranging (LiDAR topographic data provide highly accurate digital terrain information, which is used widely in applications like creating flood insurance rate maps, forest and tree studies, coastal change mapping, soil and landscape classification, 3D urban modeling, river bank management, agricultural crop studies, etc. In this paper, we focus mainly on the use of LiDAR data in terrain modeling/Digital Elevation Model (DEM generation. Technological advancements in building LiDAR sensors have enabled highly accurate and highly dense LiDAR point clouds, which have made possible high resolution modeling of terrain surfaces. However, high density data result in massive data volumes, which pose computing issues. Computational time required for dissemination, processing and storage of these data is directly proportional to the volume of the data. We describe a novel technique based on the slope map of the terrain, which addresses the challenging problem in the area of spatial data analysis, of reducing this dense LiDAR data without sacrificing its accuracy. To the best of our knowledge, this is the first ever landscape-driven data reduction algorithm. We also perform an empirical study, which shows that there is no significant loss in accuracy for the DEM generated from a 52% reduced LiDAR dataset generated by our algorithm, compared to the DEM generated from an original, complete LiDAR dataset. For the accuracy of our statistical analysis, we perform Root Mean Square Error (RMSE comparing all of the grid points of the original DEM to the DEM generated by reduced data, instead of comparing a few random control points. Besides, our multi-core data reduction algorithm is highly scalable. We also describe a modified parallel Inverse Distance Weighted (IDW spatial interpolation method and show that the DEMs it generates are time-efficient and have better accuracy than the one’s generated by the traditional IDW method.

Rockfall hazard analysis using LiDAR and spatial modeling

Science.gov (United States)

Lan, Hengxing; Martin, C. Derek; Zhou, Chenghu; Lim, Chang Ho

2010-05-01

Rockfalls have been significant geohazards along the Canadian Class 1 Railways (CN Rail and CP Rail) since their construction in the late 1800s. These rockfalls cause damage to infrastructure, interruption of business, and environmental impacts, and their occurrence varies both spatially and temporally. The proactive management of these rockfall hazards requires enabling technologies. This paper discusses a hazard assessment strategy for rockfalls along a section of a Canadian railway using LiDAR and spatial modeling. LiDAR provides accurate topographical information of the source area of rockfalls and along their paths. Spatial modeling was conducted using Rockfall Analyst, a three dimensional extension to GIS, to determine the characteristics of the rockfalls in terms of travel distance, velocity and energy. Historical rockfall records were used to calibrate the physical characteristics of the rockfall processes. The results based on a high-resolution digital elevation model from a LiDAR dataset were compared with those based on a coarse digital elevation model. A comprehensive methodology for rockfall hazard assessment is proposed which takes into account the characteristics of source areas, the physical processes of rockfalls and the spatial attribution of their frequency and energy.

[Estimating individual tree aboveground biomass of the mid-subtropical forest using airborne LiDAR technology].

Science.gov (United States)

Liu, Feng; Tan, Chang; Lei, Pi-Feng

2014-11-01

Taking Wugang forest farm in Xuefeng Mountain as the research object, using the airborne light detection and ranging (LiDAR) data under leaf-on condition and field data of concomitant plots, this paper assessed the ability of using LiDAR technology to estimate aboveground biomass of the mid-subtropical forest. A semi-automated individual tree LiDAR cloud point segmentation was obtained by using condition random fields and optimization methods. Spatial structure, waveform characteristics and topography were calculated as LiDAR metrics from the segmented objects. Then statistical models between aboveground biomass from field data and these LiDAR metrics were built. The individual tree recognition rates were 93%, 86% and 60% for coniferous, broadleaf and mixed forests, respectively. The adjusted coefficients of determination (R(2)adj) and the root mean squared errors (RMSE) for the three types of forest were 0.83, 0.81 and 0.74, and 28.22, 29.79 and 32.31 t · hm(-2), respectively. The estimation capability of model based on canopy geometric volume, tree percentile height, slope and waveform characteristics was much better than that of traditional regression model based on tree height. Therefore, LiDAR metrics from individual tree could facilitate better performance in biomass estimation.

Ovarian mixed germ cell tumor with yolk sac and teratomatous components in a dog.

Science.gov (United States)

Robinson, Nicholas A; Manivel, J Carlos; Olson, Erik J

2013-05-01

Mixed germ cell tumors of the ovary have rarely been reported in veterinary species. A 3-year-old intact female Labrador Retriever dog was presented for lethargy, abdominal distention, and a midabdominal mass. An exploratory laparotomy revealed a large (23 cm in diameter) left ovarian tumor and multiple small (2-3 cm in diameter) pale tan masses on the peritoneum and abdominal surface of the diaphragm. Histological examination of the left ovary revealed a mixed germ cell tumor with a yolk sac component with rare Schiller-Duval bodies and a teratomatous component comprised primarily of neural differentiation. The abdominal metastases were solely comprised of the yolk sac component. The yolk sac component was diffusely immunopositive for cytokeratin with scattered cells reactive for α-fetoprotein and placental alkaline phosphatase. Within the teratomatous component, the neuropil was diffusely immunopositive for S100, neuron-specific enolase, and neurofilaments with a few glial fibrillary acidic protein immunopositive cells. Ovarian germ cell tumors may be pure and consist of only 1 germ cell element or may be mixed and include more than 1 germ cell element, such as teratoma and yolk sac tumor.

Comparisons between field- and LiDAR-based measures of stand structrual complexity

Science.gov (United States)

Van R. Kane; Robert J. McGaughey; Jonathan D. Bakker; Rolf F. Gersonde; James A. Lutz; Jerry F. Franklin

2010-01-01

Forest structure, as measured by the physical arrangement of trees and their crowns, is a fundamental attribute of forest ecosystems that changes as forests progress through successional stages. We examined whether LiDAR data could be used to directly assess the successional stage of forests by determining the degree to which the LiDAR data would show the same relative...

NASA Fluid Lensing & MiDAR: Next-Generation Remote Sensing Technologies for Aquatic Remote Sensing

Science.gov (United States)

Chirayath, Ved

2018-01-01

We present two recent instrument technology developments at NASA, Fluid Lensing and MiDAR, and their application to remote sensing of Earth's aquatic systems. Fluid Lensing is the first remote sensing technology capable of imaging through ocean waves in 3D at sub-cm resolutions. MiDAR is a next-generation active hyperspectral remote sensing and optical communications instrument capable of active fluid lensing. Fluid Lensing has been used to provide 3D multispectral imagery of shallow marine systems from unmanned aerial vehicles (UAVs, or drones), including coral reefs in American Samoa and stromatolite reefs in Hamelin Pool, Western Australia. MiDAR is being deployed on aircraft and underwater remotely operated vehicles (ROVs) to enable a new method for remote sensing of living and nonliving structures in extreme environments. MiDAR images targets with high-intensity narrowband structured optical radiation to measure an objectâ€"TM"s non-linear spectral reflectance, image through fluid interfaces such as ocean waves with active fluid lensing, and simultaneously transmit high-bandwidth data. As an active instrument, MiDAR is capable of remotely sensing reflectance at the centimeter (cm) spatial scale with a signal-to-noise ratio (SNR) multiple orders of magnitude higher than passive airborne and spaceborne remote sensing systems with significantly reduced integration time. This allows for rapid video-frame-rate hyperspectral sensing into the far ultraviolet and VNIR wavelengths. Previously, MiDAR was developed into a TRL 2 laboratory instrument capable of imaging in thirty-two narrowband channels across the VNIR spectrum (400-950nm). Recently, MiDAR UV was raised to TRL4 and expanded to include five ultraviolet bands from 280-400nm, permitting UV remote sensing capabilities in UV A, B, and C bands and enabling mineral identification and stimulated fluorescence measurements of organic proteins and compounds, such as green fluorescent proteins in terrestrial and

Erythropoietin may reduce the risk of germ cell loss in boys with cryptorchidism

DEFF Research Database (Denmark)

Cortes, Dina; Visfeldt, J; Thorup, J M

2001-01-01

In boys with cryptorchidism older than 2 years a testicular biopsy at time of orchiopexy shows lack of germ cells in 10-40% of the cases. The number of spermatogonia per tubule is prognostic for subsequent fertility potential. A biopsy without germ cells is associated with 33-100% risk of inferti...

A Thin Plate Spline-Based Feature-Preserving Method for Reducing Elevation Points Derived from LiDAR

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Chuanfa Chen

2015-09-01

Full Text Available Light detection and ranging (LiDAR technique is currently one of the most important tools for collecting elevation points with a high density in the context of digital elevation model (DEM construction. However, the high density data always leads to serious time and memory consumption problems in data processing. In this paper, we have developed a thin plate spline (TPS-based feature-preserving (TPS-F method for LiDAR-derived ground data reduction by selecting a certain amount of significant terrain points and by extracting geomorphological features from the raw dataset to maintain the accuracy of constructed DEMs as high as possible, while maximally keeping terrain features. We employed four study sites with different topographies (i.e., flat, undulating, hilly and mountainous terrains to analyze the performance of TPS-F for LiDAR data reduction in the context of DEM construction. These results were compared with those of the TPS-based algorithm without features (TPS-W and two classical data selection methods including maximum z-tolerance (Max-Z and the random method. Results show that irrespective of terrain characteristic, the two versions of TPS-based approaches (i.e., TPS-F and TPS-W are always more accurate than the classical methods in terms of error range and root means square error. Moreover, in terms of streamline matching rate (SMR, TPS-F has a better ability of preserving geomorphological features, especially for the mountainous terrain. For example, the average SMR of TPS-F is 89.2% in the mountainous area, while those of TPS-W, max-Z and the random method are 56.6%, 34.7% and 35.3%, respectively.

Optimizing variable radius plot size and LiDAR resolution to model standing volume in conifer forests

Science.gov (United States)

Ram Kumar Deo; Robert E. Froese; Michael J. Falkowski; Andrew T. Hudak

2016-01-01

The conventional approach to LiDAR-based forest inventory modeling depends on field sample data from fixed-radius plots (FRP). Because FRP sampling is cost intensive, combining variable-radius plot (VRP) sampling and LiDAR data has the potential to improve inventory efficiency. The overarching goal of this study was to evaluate the integration of LiDAR and VRP data....

Gender differences in the induction of chromosomal aberrations and gene mutations in rodent germ cells

International Nuclear Information System (INIS)

Adler, Ilse-Dore; Carere, Angelo; Eichenlaub-Ritter, Ursula; Pacchierotti, Francesca

2007-01-01

Germ cell mutagenicity testing provides experimental data to quantify genetic risk for exposed human populations. The majority of tests are performed with exposure of males, and female data are relatively rare. The reason for this paucity lies in the differences between male and female germ cell biology. Male germ cells are produced throughout reproductive life and all developmental stages can be ascertained by appropriate breeding schemes. In contrast, the female germ cell pool is limited, meiosis begins during embryogenesis and oocytes are arrested over long periods of time until maturation processes start for small numbers of oocytes during the oestrus cycle in mature females. The literature data are reviewed to point out possible gender differences of germ cells to exogenous agents such as chemicals or ionizing radiation. From the limited information, it can be concluded that male germ cells are more sensitive than female germ cells to the induction of chromosomal aberrations and gene mutations. However, exceptions are described which shed doubt on the extrapolation of experimental data from male rodents to the genetic risk of the human population. Furthermore, the female genome may be more sensitive to mutation induction during peri-conceptional stages compared to the male genome of the zygote. With few exceptions, germ cell experiments have been carried out under high acute exposure to optimize the effects and to compensate for the limited sample size in animal experiments. Human exposure to environmental agents, on the other hand, is usually chronic and involves low doses. Under these conditions, gender differences may become apparent that have not been studied so far. Additionally, data are reviewed that suggest a false impression of safety when responses are negative under high acute exposure of male rodents while a mutational response is induced by low chronic exposure. The classical (morphological) germ cell mutation tests are not performed anymore

Pluripotency Factors in Embryonic Stem Cells Regulate Differentiation into Germ Layers

OpenAIRE

Thomson, Matt; Liu, Siyuan John; Zou, Ling-Nan; Smith, Zack; Meissner, Alexander; Ramanathan, Sharad

2011-01-01

Cell fate decisions are fundamental for development, but we do not know how transcriptional networks reorganize during the transition from a pluripotent to a differentiated cell state. Here, we asked how mouse embryonic stem cells (ESCs) leave the pluripotent state and choose between germ layer fates. By analyzing the dynamics of the transcriptional circuit that maintains pluripotency, we found that Oct4 and Sox2, proteins that maintain ESC identity, also orchestrate germ layer fate selection...

Primordial germ cell biology at the beginning of the XXI century.

Science.gov (United States)

De Felici, Massimo

2009-01-01

At the XIV Workshop on the Development and Function of the Reproductive Organs held at the Congress Centre of the University of Rome Tor Vergata, Monteporzio Catone, Rome, Italy, the introduction to the first session entitled Mammalian primordial germ cells dedicated to the memory of Anne McLaren, was the occasion for a concise review of the state of art of research on the biology of primordial germ cells (PGCs). This great, unforgettable scientist, who died in a car accident in July 2007, dedicated most of her studies to this field over the last 25 years. Topics briefly reviewed in this Meeting Report are: 1) how the germ line is determined; 2) what are the mechanisms underlying PGC migration; 3) to what extent PGC survival, proliferation and differentiation are cell autonomous or environmentally controlled processes and 4) how the potential for totipotency is retained in PGCs.

Generalised small signal analysis of a DAR /Double Avalanche Region/ IMPATT diode

Science.gov (United States)

Datta, D. N.; Pal, B. B.

1982-06-01

A generalized small signal analysis of a DAR IMPATT diode is carried out using recent values of ionization rates and saturated drift velocities of electrons and holes for Si and GaAs taking both the drift and the diffusion of charge carriers into account. The results show similar discrete negative conductance frequency bands separated by positive conductance frequency bands for an asymmetrical structure as in the ideal case (Som et al., 1974), establishing that the harmonically related frequencies can be avoided in the Si DAR IMPATT diode. In contrast to the ideal case, however, the symmetrical DAR IMPATT here also exhibits finite negative conductance. The GaAs DAR IMPATT shows variations of negative conductance that are similar to those in Si at high frequencies (in the mm wave range); at the low frequency side (less than 1 GHz), however, the IMPATT gives uniform negative conductances unlike Si where the negative conductance comes only at higher frequencies. Consideration is given in the calculations to thin depletion layers (0.8, 1, and 2 microns) to show the usefulness of the device in the mm wave range.

Airborne LiDAR reflective linear feature extraction for strip adjustment and horizontal accuracy determination.

Science.gov (United States)

2009-02-01

ODOT's Office of Aerial Engineering (OAE) has been using an Opetch 30/70 ALTM airborne LiDAR system for about four years. The introduction of LiDAR technology was a major development towards improving the mapping operations. The overall experiences a...

Orientation of Germ Tubes of Puccinia hordei on the Hordeum chilense Leaf Surface

NARCIS (Netherlands)

Vaz Patto, M.C.; Niks, R.E.

2000-01-01

The directional growth of urediospores germ tubes along the transverse axis of a cereal's leaf is considered to be a response to stimuli from the plant surface. In order to find out if the germ tube growth is directed towards stomata, and if the cuticular wax layer plays a role in this orientated

Weierstrass preparation and division theorems for the ring of germs of superanalytic functions

International Nuclear Information System (INIS)

Yankov, C.L.

1989-11-01

The aim of this paper is to show that Weierstrass preparation and division theorems hold for the ring of germs of superanalytic functions at a given point. This ring is the tensor product of the ring of germs of analytic functions at that point and a finite-dimensional complex Grassmann algebra. 7 refs

BUILDING DAMAGE ASSESSMENT AFTER EARTHQUAKE USING POST-EVENT LiDAR DATA

Directory of Open Access Journals (Sweden)

H. Rastiveis

2015-12-01

Full Text Available After an earthquake, damage assessment plays an important role in leading rescue team to help people and decrease the number of mortality. Damage map is a map that demonstrates collapsed buildings with their degree of damage. With this map, finding destructive buildings can be quickly possible. In this paper, we propose an algorithm for automatic damage map generation after an earthquake using post-event LiDAR Data and pre-event vector map. The framework of the proposed approach has four main steps. To find the location of all buildings on LiDAR data, in the first step, LiDAR data and vector map are registered by using a few number of ground control points. Then, building layer, selected from vector map, are mapped on the LiDAR data and all pixels which belong to the buildings are extracted. After that, through a powerful classifier all the extracted pixels are classified into three classes of “debris”, “intact building” and “unclassified”. Since textural information make better difference between “debris” and “intact building” classes, different textural features are applied during the classification. After that, damage degree for each candidate building is estimated based on the relation between the numbers of pixels labelled as “debris” class to the whole building area. Calculating the damage degree for each candidate building, finally, building damage map is generated. To evaluate the ability proposed method in generating damage map, a data set from Port-au-Prince, Haiti’s capital after the 2010 Haiti earthquake was used. In this case, after calculating of all buildings in the test area using the proposed method, the results were compared to the damage degree which estimated through visual interpretation of post-event satellite image. Obtained results were proved the reliability of the proposed method in damage map generation using LiDAR data.

Influence of different dose irradiation on genetic effect in mice somatic and germ cells

International Nuclear Information System (INIS)

Kostrova, L.N.; Molofej, V.P.; Mosseh, I.B.

2007-01-01

Comparison of clastogenic effects of different radiation doses in somatic and germ cells of one the same animals has been studied. Correlation analysis allows to extrapolate genetic effects from somatic cells to germ ones. This can be useful for human model elaboration. (authors)

Development and mapping of DArT markers within the Festuca - Lolium complex

Directory of Open Access Journals (Sweden)

Studer Bruno

2009-10-01

Full Text Available Abstract Background Grasses are among the most important and widely cultivated plants on Earth. They provide high quality fodder for livestock, are used for turf and amenity purposes, and play a fundamental role in environment protection. Among cultivated grasses, species within the Festuca-Lolium complex predominate, especially in temperate regions. To facilitate high-throughput genome profiling and genetic mapping within the complex, we have developed a Diversity Arrays Technology (DArT array for five grass species: F. pratensis, F. arundinacea, F. glaucescens, L. perenne and L. multiflorum. Results The DArTFest array contains 7680 probes derived from methyl-filtered genomic representations. In a first marker discovery experiment performed on 40 genotypes from each species (with the exception of F. glaucescens for which only 7 genotypes were used, we identified 3884 polymorphic markers. The number of DArT markers identified in every single genotype varied from 821 to 1852. To test the usefulness of DArTFest array for physical mapping, DArT markers were assigned to each of the seven chromosomes of F. pratensis using single chromosome substitution lines while recombinants of F. pratensis chromosome 3 were used to allocate the markers to seven chromosome bins. Conclusion The resources developed in this project will facilitate the development of genetic maps in Festuca and Lolium, the analysis on genetic diversity, and the monitoring of the genomic constitution of the Festuca × Lolium hybrids. They will also enable marker-assisted selection for multiple traits or for specific genome regions.

Oocyte toxicity: female germ-cell loss from radiation and chemical exposures

International Nuclear Information System (INIS)

Dobson, R.L.

1984-01-01

In some mammals, female germ cells are extraordinarily sensitive to killing by exposure to ionizing radiation, especially during development. Immature oocytes, which constitute the lifetime germ-cell pool of the female, have an LD 50 in juvenile mice of only 6 rad (compared with typical LD 50 s of 100-300 rad for most other cell types studied). Essentially, the entire germ-cell supply in female squirrel monkeys is destroyed prenatally by exposure of only 0.7 rad/day. Severe but lesser destruction has been found in other species. However, evidence suggests (though not ruled out for all developmental stages) that unusually high sensitivity probably does not occur in the human female. Germ cells can also be killed by certain chemicals, and similarities exist between chemical and radiation effects. More than 75 compounds have been quantitatively studied in mice, with determination of OTI values (OTI = oocyte toxicity index = mouse LD 50 /oocyte LD 50 ) to measure the degree of preferential oocyte killing. High sensitivity in mice does not mean necessarily high sensitivity in women. Of special interest is the recent discovery that the lethal target in the extremely sensitive mouse immature oocyte is probably the plasma membrane, not DNA. Since mouse data form the main basis from which human genetic hazard (for both radiation and chemicals) is estimated, this has important implications for the determination of genetic risk in women

Urban Classification Techniques Using the Fusion of LiDAR and Spectral Data

Science.gov (United States)

2012-09-01

37 D. MASK CREATION .......................................................................................39 viii 1. LiDAR-based Masks...in Quick Terrain Modeler 2. WorldView-2 The image used in this project was collected by WorldView-2 on November 8, 2011 at Zulu time 19:34:42...OBSERVATIONS A. PROCESS OVERVIEW The focus of this thesis was to create a robust technique for fusing LiDAR and spectral imagery for creation of a

Tropical Airborne LiDAR for Landslide Assessment in Malaysia: a technical perspective

Science.gov (United States)

Abd Manap, Mohamad; Azhari Razak, Khamarrul; Mohamad, Zakaria; Ahmad, Azhari; Ahmad, Ferdaus; Mohamad Zin, Mazlan; A'zad Rosle, Qalam

2015-04-01

Malaysia has faced a substantial number of landslide events every year. Cameron Highlands, Pahang is one of the badly areas affected by slope failures characterized by extreme climate, rugged topographic and weathered geological structures in a tropical environment. A high frequency of landslide occurrence in the hilly areas is predominantly due to the geological materials, tropical monsoon seasons and uncontrolled agricultural activities. Therefore the Government of Malaysia through the Prime Minister Department has allocated a special budget to conduct national level hazard and risk mapping project through Minerals and Geoscience Department Malaysia, the Ministry of Natural Resources and Environment. The primary aim of this project is to provide slope hazard risk information for a better slope management in Malaysia. In addition this project will establish national infrastructure for geospatial information on the geological terrain and slope by emphasizing the disaster risk throughout the country. The areas of interest are located in the three different selected areas i.e. Cameron Highlands (275 square kilometers), Ipoh (200 square kilometers) and Cheras Kajang -- Batang kali (650 square kilometers). These areas are selected based on National Slope Master Plan (2009 -- 2023) that endorsed by Malaysia Government Cabinet. The national hazard and risk mapping project includes six parts of major tasks: (1) desk study and mobilization, (2) airborne LiDAR data acquisition and analysis, (3) field data acquisition and verification, (4) hazard and risk for natural terrain, (5) hazard and risk analysis for man-made slope and (6) Man-made slope mitigation/preventive measures. The project was authorized in September, 2014 and will be ended in March, 2016. In this paper, the main focus is to evaluate the suitability of integrated capability of airborne- and terrestrial LiDAR data acquisition and analysis, and also digital photography for regional landslide assessment. The

On the number of founding germ cells in humans

Directory of Open Access Journals (Sweden)

Byers Breck

2005-08-01

Full Text Available Abstract Background The number of founding germ cells (FGCs in mammals is of fundamental significance to the fidelity of gene transmission between generations, but estimates from various methods vary widely. In this paper we obtain a new estimate for the value in humans by using a mathematical model of germ cell development that depends on available oocyte counts for adult women. Results The germline-development model derives from the assumption that oogonial proliferation in the embryonic stage starts with a founding cells at t = 0 and that the subsequent proliferation can be defined as a simple stochastic birth process. It follows that the population size X(t at the end of germline expansion (around the 5th month of pregnancy in humans; t = 0.42 years is a random variable with a negative binomial distribution. A formula based on the expectation and variance of this random variable yields a moment-based estimate of a that is insensitive to the progressive reduction in oocyte numbers due to their utilization and apoptosis at later stages of life. In addition, we describe an algorithm for computing the maximum likelihood estimation of the FGC population size (a, as well as the rates of oogonial division and loss to apoptosis. Utilizing both of these approaches to evaluate available oocyte-counting data, we have obtained an estimate of a = 2 – 3 for Homo sapiens. Conclusion The estimated number of founding germ cells in humans corresponds well with values previously derived from chimerical or mosaic mouse data. These findings suggest that the large variation in oocyte numbers between individual women is consistent with a smaller founding germ cell population size than has been estimated by cytological analyses.

Radiation- induced aneuploidy in mammalian germ cells

International Nuclear Information System (INIS)

Tease, C.

1989-01-01

The ability of ionizing radiation to induce aneuploidy in mammalian germ cells has been investigated experimentally in the laboratory mouse using a variety of cytogenetic and genetic methods. These studies have provided unambiguous evidence of induced nondisjunction in both male and female germ cells when the effect of irradiation is screened in meiotic cells or preimplantation embryos. In contrast, however, cytogenetic analyses of post-implantation embryos and genetic assays for induced chromosome gains have not found a significant radiation effect. These apparently contradictory findings may be reconciled if (a) radiation induces tertiary rather than primary trisomy, or (b) induces embryo-lethal genetic damage, such as deletions, in addition to numerical anomalies. Either or both of these explanations may account for the apparent loss during gestation of radiation-induced trisomic embryos. Extrapolating from the information so far available, it seems unlikely that environmental exposure to low doses if low dose rate radiation will result in a detectable increase in the rate of aneuploidy in the human population. (author)

Elevation - LiDAR Survey Minnehaha Creek, MN Watershed

Data.gov (United States)

Army Corps of Engineers, Department of the Army, Department of Defense — LiDAR Bare-Earth Grid - Minnehaha Creek Watershed District. The Minnehaha Creek watershed is located primarily in Hennepin County, Minnesota. The watershed covers...

Ovarian germ cell tumors with rhabdomyosarcomatous components and later development of growing teratoma syndrome: a case report

Directory of Open Access Journals (Sweden)

Al-Jumaily Usama

2012-01-01

Full Text Available Abstract Introduction Development of a sarcomatous component in a germ cell tumor is an uncommon phenomenon. Most cases reported have a grim prognosis. Growing teratoma syndrome is also an uncommon phenomenon and occurs in approximately 2% to 7% of non seminomatous germ cell tumors and should be treated surgically. Case presentation We report the case of a 12-year-old Asian girl with an ovarian mixed germ cell tumor containing a rhabdomyosarcomatous component. She was treated with a germ cell tumor chemotherapy regimen and rhabdomyosarcoma-specific chemotherapy. Towards the end of her treatment, she developed a retroperitoneal mass that was increasing in size. It was completely resected, revealing a mature teratoma, consistent with growing teratoma syndrome. She is still in complete remission approximately three years after presentation. Conclusion The presence of rhabdomyosarcoma in a germ cell tumor should be treated by a combined chemotherapy regimen (for germ cell tumor and rhabdomyosarcoma. In addition, development of a mass during or after therapy with normal serum markers should raise the possibility of growing teratoma syndrome that should be treated surgically.

Surface characteristics modeling and performance evaluation of urban building materials using LiDAR data.

Science.gov (United States)

Li, Xiaolu; Liang, Yu

2015-05-20

Analysis of light detection and ranging (LiDAR) intensity data to extract surface features is of great interest in remote sensing research. One potential application of LiDAR intensity data is target classification. A new bidirectional reflectance distribution function (BRDF) model is derived for target characterization of rough and smooth surfaces. Based on the geometry of our coaxial full-waveform LiDAR system, the integration method is improved through coordinate transformation to establish the relationship between the BRDF model and intensity data of LiDAR. A series of experiments using typical urban building materials are implemented to validate the proposed BRDF model and integration method. The fitting results show that three parameters extracted from the proposed BRDF model can distinguish the urban building materials from perspectives of roughness, specular reflectance, and diffuse reflectance. A comprehensive analysis of these parameters will help characterize surface features in a physically rigorous manner.

Treatment Options By Stage (Ovarian Germ Cell Tumors)

Science.gov (United States)

... Germ Cell Tumors Treatment (PDQ®)–Patient Version Treatment Option Overview Go to Health Professional Version Key Points ... and restore) the body’s blood cells. New treatment options Combination chemotherapy (the use of more than one ...

Improving low-relief coastal LiDAR DEMs with hydro-conditioning of fine-scale and artificial drainages

Directory of Open Access Journals (Sweden)

Thomas Richard Allen

2015-11-01

Full Text Available Improvements in Light Detection and Ranging (LiDAR technology and spatial analysis of high-resolution digital elevation models (DEMs have advanced the accuracy and diversity of applications for coastal hazards and natural resources management. This article presents a concise synthesis of LiDAR analysis for coastal flooding and management applications in low-relief coastal plains and a case study demonstration of a new, efficient drainage mapping algorithm. The impetus for these LiDAR applications follows historic flooding from Hurricane Floyd in 1999, after which the State of North Carolina and the Federal Emergency Management Agency undertook extensive LiDAR data acquisition and technological developments for high-resolution floodplain mapping. An efficient algorithm is outlined for hydro-conditioning bare earth LiDAR DEMs using available US Geological Survey National Hydrography Dataset canal and ditch vectors. The methodology is illustrated in Moyock, North Carolina, for refinement of hydro-conditioning by combines pre-existing bare earth DEMs with spatial analysis of LiDAR point clouds in segmented and buffered ditch and canal networks. The methodology produces improved maps of fine-scale drainage, reduced omission of areal flood inundation, and subwatershed delineations that typify heavily ditched and canalled drainage areas. These preliminary results illustrate the capability of the technique to improve the representation of ditches in DEMs as well as subsequent flow and inundation modeling that could spur further research on low-relief coastal LiDAR applications.

Application of LiDAR to hydrologic flux estimation in Australian eucalypt forests (Invited)

Science.gov (United States)

Lane, P. N.; Mitchell, P. J.; Jaskierniak, D.; Hawthorne, S. N.; Griebel, A.

2013-12-01

The potential of LiDAR in ecohydrology is significant as characterising catchment vegetation is crucial to accurate estimation of evapotranspiration (ET). While this may be done at large scales for model parameterisation, stand-scale applications are equally appropriate where traditional methods of measurement of LAI or sapwood areas are time consuming and reliant on assumptions of representative sampling. This is particularly challenging in mountain forests where aspect, soil properties and energy budgets can vary significantly, reflected in the vegetation or where there are changes in the spatial distribution of structural attributes following disturbance. Recent research has investigated the spatial distribution of ET in a eucalypt forest in SE Australia using plot-scale sapflow, interception and forest floor ET measurements. LiDAR was used scale up these measurements. LiDAR (0.16 m scanner footprint) canopy indices were correlated via stepwise regression with 4 water use scalars: basal area (BA), sapwood area (SA), leaf area index (LAI) and canopy coverage (C), with Hmed, Hmean, H80, H95 the best predictors. Combining these indices with empirical relationships between SA and BA, and SA and transpiration (T), and inventory plot 'ground truthing' transpiration was estimated across the 1.3 km2 catchment. Interception was scaled via the Gash model with LiDAR derived inputs. The up-scaling showed a significant variability in the spatial distribution of ET, related to the distribution of SA. The use of LiDAR meant scaling could be achieved at an appropriate spatial scale (20 x 20 m) to the measurements. The second example is the use of airborne LiDAR in developing growth forest models for hydrologic modeling. LiDAR indices were used to stratify multilayered forests using mixed-effect models with a wide range of theoretical distribution functions. When combined with historical plot-scale inventory data we show demonstrated improved growth modeling over traditional

Prevention of airborne contamination and cross-contamination in germ-free mice by laminar flow

NARCIS (Netherlands)

Waaij, D. van der; Andres, A.H.

1971-01-01

The efficacy of horizontal and vertical laminar flow units (equipped with high-efficiency air filters) in the prevention of cross-contamination between cages and of contamination from outside has been demonstrated. With germ-free mice and using germ-free standard techniques for sterilization and for

Absence of Microbiota (Germ-Free Conditions) Accelerates the Atherosclerosis in ApoE-Deficient Mice Fed Standard Low Cholesterol Diet

Czech Academy of Sciences Publication Activity Database

Štěpánková, Renata; Tonar, Z.; Bártová, J.; Nedorost, L.; Rossmann, Pavel; Poledne, R.; Schwarzer, Martin; Tlaskalová-Hogenová, Helena

2010-01-01

Roč. 17, č. 8 (2010), s. 796-804 ISSN 1340-3478 R&D Projects: GA MZd NS9775; GA ČR GA303/08/0367; GA ČR GA305/08/0535; GA AV ČR 1QS500200572; GA MŠk 2B06155 Institutional research plan: CEZ:AV0Z50200510 Keywords : Germ-free mice * Commensal bacteria * Atherogenesis Subject RIV: EC - Immunology Impact factor: 2.293, year: 2010

Synchronous Adversarial Feature Learning for LiDAR based Loop Closure Detection

OpenAIRE

Yin, Peng; He, Yuqing; Xu, Lingyun; Peng, Yan; Han, Jianda; Xu, Weiliang

2018-01-01

Loop Closure Detection (LCD) is the essential module in the simultaneous localization and mapping (SLAM) task. In the current appearance-based SLAM methods, the visual inputs are usually affected by illumination, appearance and viewpoints changes. Comparing to the visual inputs, with the active property, light detection and ranging (LiDAR) based point-cloud inputs are invariant to the illumination and appearance changes. In this paper, we extract 3D voxel maps and 2D top view maps from LiDAR ...

DAZ Family Proteins, Key Players for Germ Cell Development

Science.gov (United States)

Fu, Xia-Fei; Cheng, Shun-Feng; Wang, Lin-Qing; Yin, Shen; De Felici, Massimo; Shen, Wei

2015-01-01

DAZ family proteins are found almost exclusively in germ cells in distant animal species. Deletion or mutations of their encoding genes usually severely impair either oogenesis or spermatogenesis or both. The family includes Boule (or Boll), Dazl (or Dazla) and DAZ genes. Boule and Dazl are situated on autosomes while DAZ, exclusive of higher primates, is located on the Y chromosome. Deletion of DAZ gene is the most common causes of infertility in humans. These genes, encoding for RNA binding proteins, contain a highly conserved RNA recognition motif and at least one DAZ repeat encoding for a 24 amino acids sequence able to bind other mRNA binding proteins. Basically, Daz family proteins function as adaptors for target mRNA transport and activators of their translation. In some invertebrate species, BOULE protein play a pivotal role in germline specification and a conserved regulatory role in meiosis. Depending on the species, DAZL is expressed in primordial germ cells (PGCs) and/or pre-meiotic and meiotic germ cells of both sexes. Daz is found in fetal gonocytes, spermatogonia and spermatocytes of adult testes. Here we discuss DAZ family genes in a phylogenic perspective, focusing on the common and distinct features of these genes, and their pivotal roles during gametogenesis evolved during evolution. PMID:26327816

Origins and molecular biology of testicular germ cell tumors.

Science.gov (United States)

Reuter, Victor E

2005-02-01

Testicular germ cell tumors can be divided into three groups (infantile/prepubertal, adolescent/young adult and spermatocytic seminoma), each with its own constellation of clinical histology, molecular and clinical features. They originate from germ cells at different stages of development. The most common testicular cancers arise in postpubertal men and are characterized genetically by having one or more copies of an isochromosome of the short arm of chromosome 12 [i(12p)] or other forms of 12p amplification and by aneuploidy. The consistent gain of genetic material from chromosome 12 seen in these tumors suggests that it has a crucial role in their development. Intratubular germ cell neoplasia, unclassified type (IGCNU) is the precursor to these invasive tumors. Several factors have been associated with their pathogenesis, including cryptorchidism, elevated estrogens in utero and gonadal dysgenesis. Tumors arising in prepubertal gonads are either teratomas or yolk sac tumors, tend to be diploid and are not associated with i(12p) or with IGCNU. Spermatocytic seminoma (SS) arises in older patients. These benign tumors may be either diploid or aneuploid and have losses of chromosome 9 rather than i(12p). Intratubular SS is commonly encountered but IGCNU is not. The pathogenesis of prepubertal GCT and SS is poorly understood.

Germ-line PHD1 and PHD2 mutations detected in patients with pheochromocytoma/paraganglioma-polycythemia.

Science.gov (United States)

Yang, Chunzhang; Zhuang, Zhengping; Fliedner, Stephanie M J; Shankavaram, Uma; Sun, Michael G; Bullova, Petra; Zhu, Roland; Elkahloun, Abdel G; Kourlas, Peter J; Merino, Maria; Kebebew, Electron; Pacak, Karel

2015-01-01

We have investigated genetic/pathogenetic factors associated with a new clinical entity in patients presenting with pheochromocytoma/paraganglioma (PHEO/PGL) and polycythemia. Two patients without hypoxia-inducible factor 2α (HIF2A) mutations, who presented with similar clinical manifestations, were analyzed for other gene mutations, including prolyl hydroxylase (PHD) mutations. We have found for the first time a germ-line mutation in PHD1 in one patient and a novel germ-line PHD2 mutation in a second patient. Both mutants exhibited reduced protein stability with substantial quantitative protein loss and thus compromised catalytic activities. Due to the unique association of patients' polycythemia with borderline or mildly elevated erythropoietin (EPO) levels, we also performed an in vitro sensitivity assay of erythroid progenitors to EPO and for EPO receptor (EPOR) expression. The results show inappropriate hypersensitivity of erythroid progenitors to EPO in these patients, indicating increased EPOR expression/activity. In addition, the present study indicates that HIF dysregulation due to PHD mutations plays an important role in the pathogenesis of these tumors and associated polycythemia. The PHD1 mutation appears to be a new member contributing to the genetic landscape of this novel clinical entity. Our results support the existence of a specific PHD1- and PHD2-associated PHEO/PGL-polycythemia disorder. • A novel germ-l i n e PHD1 mutation causing heochromocytoma/paraganglioma and polycythemia. • Increased EPOR activity and inappropriate hypersensitivity of erythroid progenitors to EPO.

Treatment Options for Childhood Extracranial Germ Cell Tumors

Science.gov (United States)

... tumors: Yolk sac tumors make a hormone called alpha-fetoprotein (AFP). They can form in the ovary, testicle, ... are used to detect extracranial germ cell tumors: Alpha-fetoprotein (AFP). Beta-human chorionic gonadotropin (β-hCG). For ...

General Information about Childhood Extracranial Germ Cell Tumors

Science.gov (United States)

... tumors: Yolk sac tumors make a hormone called alpha-fetoprotein (AFP). They can form in the ovary, testicle, ... are used to detect extracranial germ cell tumors: Alpha-fetoprotein (AFP). Beta-human chorionic gonadotropin (β-hCG). For ...

Germ Plasm Anchoring Is a Dynamic State that Requires Persistent Trafficking

Directory of Open Access Journals (Sweden)

Kristina S. Sinsimer

2013-12-01

Full Text Available Localized cytoplasmic determinants packaged as ribonucleoprotein (RNP particles direct embryonic patterning and cell fate specification in a wide range of organisms. Once established, the asymmetric distributions of such RNP particles must be maintained, often over considerable developmental time. A striking example is the Drosophila germ plasm, which contains RNP particles whose localization to the posterior of the egg during oogenesis results in their asymmetric inheritance and segregation of germline from somatic fates in the embryo. Although actin-based anchoring mechanisms have been implicated, high-resolution live imaging revealed persistent trafficking of germ plasm RNP particles at the posterior cortex of the Drosophila oocyte. This motility relies on cortical microtubules, is mediated by kinesin and dynein motors, and requires coordination between the microtubule and actin cytoskeletons. Finally, we show that RNP particle motility is required for long-term germ plasm retention. We propose that anchoring is a dynamic state that renders asymmetries robust to developmental time and environmental perturbations.

Genetic linkage mapping in an F2 perennial ryegrass population using DArT markers

DEFF Research Database (Denmark)

Tomaszewski, Céline; Byrne, Stephen; Foito, Alexandra

2012-01-01

Perennial ryegrass is the principal forage grass species used in temperate agriculture. In recent years, significant efforts have been made to develop molecular marker strategies to allow cost-effective characterization of a large number of loci simultaneously. One such strategy involves using DAr......T markers, and a DArT array has recently been developed for the Lolium-Festuca complex. In this study, we report the first use of the DArTFest array to generate a genetic linkage map based on 326 markers in a Lolium perenne F2 population, consisting of 325 genotypes. For proof of concept, the map was used...

Utilizing LiDAR Datasets From Experimental Watersheds to Advance Ecohydrological Understanding in Seasonally Snow-Covered Forests

Science.gov (United States)

Harpold, A. A.; Broxton, P. D.; Guo, Q.; Barlage, M. J.; Gochis, D. J.

2014-12-01

The Western U.S. is strongly reliant on snowmelt from forested areas for ecosystem services and downstream populations. The ability to manage water resources from snow-covered forests faces major challenges from drought, disturbance, and regional changes in climate. An exciting avenue for improving ecohydrological process understanding is Light Detection and Ranging (LiDAR) because the technology simultaneously observes topography, forest properties, and snow/ice at high-resolution (100 km2). The availability and quality of LiDAR datasets is increasing rapidly, however they remain under-utilized for process-based ecohydrology investigations. This presentation will illustrate how LiDAR datasets from the Critical Zone Observatory (CZO) network have been applied to advance ecohydrological understanding through direct empirical analysis, as well as model parameterization and verification. Direct analysis of the datasets has proved fruitful for pre- and post-disturbance snow distribution estimates and interpreting in-situ snow depth measurements across sites. In addition, we illustrate the potential value of LiDAR to parameterize and verify of physical models with two examples. First, we use LiDAR to parameterize a land surface model, Noah multi-parameterization (Noah-MP), to investigate the sensitivity of modeled water and energy fluxes to high-resolution forest information. Second, we present a Snow Physics and Laser Mapping (SnowPALM) model that is parameterized with LiDAR information at its native 1-m scale. Both modeling studies demonstrate the value of LiDAR for representing processes with greater fidelity. More importantly, the increased model fidelity led to different estimates of water and energy fluxes at larger, watershed scales. Creating a network of experimental watersheds with LiDAR datasets offers the potential to test theories and models in previously unexplored ways.

Adolescent Girls with illegally Induced Abortion in Dar es Salaam

DEFF Research Database (Denmark)

Rasch, V; Silberschmidt, Margrethe; Mchumvu, Y

2000-01-01

that gave them the right to seek family planning services and in practice these services are not being provided. There is a need for youth-friendly family planning services and to make abortion safe and legal, in order to reduce unwanted pregnancies and abortion-related complications and deaths among......This article reports on a study of induced abortion among adolescent girls in Dar es Salaam, Tanzania, who were admitted to a district hospital in Dar es Salaam because of an illegally induced abortion in 1997. In the quantitative part of the study, 197 teenage girls (aged 14-19) were asked...

The OptD-multi method in LiDAR processing

International Nuclear Information System (INIS)

Błaszczak-Bąk, Wioleta; Sobieraj-Żłobińska, Anna; Kowalik, Michał

2017-01-01

New and constantly developing technology for acquiring spatial data, such as LiDAR (light detection and ranging), is a source for large volume of data. However, such amount of data is not always needed for developing the most popular LiDAR products: digital terrain model (DTM) or digital surface model. Therefore, in many cases, the number of contained points are reduced in the pre-processing stage. The degree of reduction is determined by the algorithm used, which should enable the user to obtain a dataset appropriate and optimal for the planned purpose. The aim of this article is to propose a new Optimum Dataset method (OptD method) in the processing of LiDAR point clouds. The OptD method can reduce the number of points in a dataset for the specified optimization criteria concerning the characteristics of generated DTM. The OptD method can be used in two variants: OptD-single (one criterion for optimization) and OptD-multi (two or more optimization criteria). The OptD-single method has been thoroughly tested and presented by Błaszczak-Bąk (2016 Acta Geodyn. Geomater . 13/4 379–86). In this paper the authors discussed the OptD-multi method. (paper)

ASTER GDEM validation using LiDAR data over coastal regions of Greenland

DEFF Research Database (Denmark)

Hvidegaard, Sine Munk; Sørensen, Louise Sandberg; Forsberg, René

2011-01-01

Elevation data from airborne Light Detection and Ranging (LiDAR) campaigns are used in an attempt to evaluate the accuracy of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) global digital elevation model (GDEM) in Greenland. The LiDAR elevation data set is characterized...... of Greenland and the effect of the number of scenes used to generate the ASTER GDEM as well as relief are associated with the GDEM accuracy....

The Nanos3-3'UTR is required for germ cell specific NANOS3 expression in mouse embryos.

Directory of Open Access Journals (Sweden)

Hitomi Suzuki

Full Text Available BACKGROUND: The regulation of gene expression via a 3' untranslated region (UTR plays essential roles in the discrimination of the germ cell lineage from somatic cells during embryogenesis. This is fundamental to the continuation of a species. Mouse NANOS3 is an essential protein required for the germ cell maintenance and is specifically expressed in these cells. However, the regulatory mechanisms that restrict the expression of this gene in the germ cells is largely unknown at present. METHODOLOGY/PRINCIPAL FINDINGS: In our current study, we show that differences in the stability of Nanos3 mRNA between germ cells and somatic cells is brought about in a 3'UTR-dependent manner in mouse embryos. Although Nanos3 is transcribed in both cell lineages, it is efficiently translated only in the germ lineage. We also find that the translational suppression of NANOS3 in somatic cells is caused by a 3'UTR-mediated mRNA destabilizing mechanism. Surprisingly, even when under the control of the CAG promoter which induces strong ubiquitous transcription in both germ cells and somatic cells, the addition of the Nanos3-3'UTR sequence to the coding region of exogenous gene was effective in restricting protein expression in germ cells. CONCLUSIONS/SIGNIFICANCE: Our current study thus suggests that Nanos3-3'UTR has an essential role in translational control in the mouse embryo.

Maintaining success, reducing treatment burden, focusing on survivorship: highlights from the third European consensus conference on diagnosis and treatment of germ-cell cancer.

Science.gov (United States)

Beyer, J; Albers, P; Altena, R; Aparicio, J; Bokemeyer, C; Busch, J; Cathomas, R; Cavallin-Stahl, E; Clarke, N W; Claßen, J; Cohn-Cedermark, G; Dahl, A A; Daugaard, G; De Giorgi, U; De Santis, M; De Wit, M; De Wit, R; Dieckmann, K P; Fenner, M; Fizazi, K; Flechon, A; Fossa, S D; Germá Lluch, J R; Gietema, J A; Gillessen, S; Giwercman, A; Hartmann, J T; Heidenreich, A; Hentrich, M; Honecker, F; Horwich, A; Huddart, R A; Kliesch, S; Kollmannsberger, C; Krege, S; Laguna, M P; Looijenga, L H J; Lorch, A; Lotz, J P; Mayer, F; Necchi, A; Nicolai, N; Nuver, J; Oechsle, K; Oldenburg, J; Oosterhuis, J W; Powles, T; Rajpert-De Meyts, E; Rick, O; Rosti, G; Salvioni, R; Schrader, M; Schweyer, S; Sedlmayer, F; Sohaib, A; Souchon, R; Tandstad, T; Winter, C; Wittekind, C

2013-04-01

In November 2011, the Third European Consensus Conference on Diagnosis and Treatment of Germ-Cell Cancer (GCC) was held in Berlin, Germany. This third conference followed similar meetings in 2003 (Essen, Germany) and 2006 (Amsterdam, The Netherlands) [Schmoll H-J, Souchon R, Krege S et al. European consensus on diagnosis and treatment of germ-cell cancer: a report of the European Germ-Cell Cancer Consensus Group (EGCCCG). Ann Oncol 2004; 15: 1377-1399; Krege S, Beyer J, Souchon R et al. European consensus conference on diagnosis and treatment of germ-cell cancer: a report of the second meeting of the European Germ-Cell Cancer Consensus group (EGCCCG): part I. Eur Urol 2008; 53: 478-496; Krege S, Beyer J, Souchon R et al. European consensus conference on diagnosis and treatment of germ-cell cancer: a report of the second meeting of the European Germ-Cell Cancer Consensus group (EGCCCG): part II. Eur Urol 2008; 53: 497-513]. A panel of 56 of 60 invited GCC experts from all across Europe discussed all aspects on diagnosis and treatment of GCC, with a particular focus on acute and late toxic effects as well as on survivorship issues. The panel consisted of oncologists, urologic surgeons, radiooncologists, pathologists and basic scientists, who are all actively involved in care of GCC patients. Panelists were chosen based on the publication activity in recent years. Before the meeting, panelists were asked to review the literature published since 2006 in 20 major areas concerning all aspects of diagnosis, treatment and follow-up of GCC patients, and to prepare an updated version of the previous recommendations to be discussed at the conference. In addition, ∼50 E-vote questions were drafted and presented at the conference to address the most controversial areas for a poll of expert opinions. Here, we present the main recommendations and controversies of this meeting. The votes of the panelists are added as online supplements.

Intestinal obstruction in germ-free dogs.

Science.gov (United States)

Heneghan, J B; Robinson, J W; Menge, H; Winistörfer, B

1981-08-01

Mechanical occlusions were created in the intestines of four germ-free dogs. At the time of the operation, a control loop of mid-intestine was perfused in vivo and then excised for examinations in vitro, which included the determination of the equilibrium uptake of phenylalanine and of beta-methyl-glucoside, the influx kinetics of phenylalanine and morphometric analysis of the mucosa by microdissection and stereological techniques. Seven days after establishment of the occlusion the abdomen was reopened, and loops above and below the occlusion were perfused, and then excised for the same tests in vitro. Unlike occluded loops of conventional dogs, the intestine of the germ-free animal above the occlusion does not secrete water and electrolytes into the lumen. Its transport properties in vitro do not differ from those of the control loop, and the morphometric analyses reveal only slight changes in villus structure. The loop below the obstruction undergoes marked atrophy, as has been observed in conventional dogs. The results suggest that the copious secretion that occurs above an intestinal obstruction in normal animals is due to the presence of an abundant bacterial population in the obstruction fluid.

Quantifying Wave Breaking Shape and Type in the Surf-Zone Using LiDAR

Science.gov (United States)

Albright, A.; Brodie, K. L.; Hartzell, P. J.; Glennie, C. L.

2017-12-01

Waves change shape as they shoal and break across the surf-zone, ultimately dissipating and transferring their energy into turbulence by either spilling or plunging. This injection of turbulence and changes in wave shape can affect the direction of sediment transport at the seafloor, and ultimately lead to morphological evolution. Typical methods for collecting wave data in the surf-zone include in-situ pressure gauges, velocimeters, ultrasonic sensors, and video imagery. Drawbacks to these data collection methods are low spatial resolution of point measurements, reliance on linear theory to calculate sea-surface elevations, and intensive computations required to extract wave properties from stereo 2D imagery. As a result, few field measurements of the shapes of plunging and/or spilling breakers exist, and existing knowledge is confined to results of laboratory studies. We therefore examine the use of a multi-beam scanning Light Detection and Ranging (LiDAR) remote sensing instrument with the goal of classifying the breaking type of propagating waves in the surf-zone and quantitatively determining wave morphometric properties. Data were collected with a Velodyne HDL-32E LiDAR scanner (360° vertical field of view) mounted on an arm of the Coastal Research Amphibious Buggy (CRAB) at the U.S. Army Corps of Engineers Field Research Facility in Duck, North Carolina. Processed laser scan data are used to visualize the lifecycle of a wave (shoaling, breaking, broken) and identify wave types (spilling, plunging, non-breaking) as they pass beneath the scanner. For each rotation of the LiDAR scanner, the point cloud data are filtered, smoothed, and detrended in order to identify individual waves and measure their properties, such as speed, height, period, upward/downward slope, asymmetry, and skewness. The 3D nature of point cloud data is advantageous for research, because it enables viewing from any angle. In our analysis, plan views are used to separate individual waves

Quantifying soil carbon loss and uncertainty from a peatland wildfire using multi-temporal LiDAR

Science.gov (United States)

Reddy, Ashwan D.; Hawbaker, Todd J.; Wurster, F.; Zhu, Zhiliang; Ward, S.; Newcomb, Doug; Murray, R.

2015-01-01

Peatlands are a major reservoir of global soil carbon, yet account for just 3% of global land cover. Human impacts like draining can hinder the ability of peatlands to sequester carbon and expose their soils to fire under dry conditions. Estimating soil carbon loss from peat fires can be challenging due to uncertainty about pre-fire surface elevations. This study uses multi-temporal LiDAR to obtain pre- and post-fire elevations and estimate soil carbon loss caused by the 2011 Lateral West fire in the Great Dismal Swamp National Wildlife Refuge, VA, USA. We also determine how LiDAR elevation error affects uncertainty in our carbon loss estimate by randomly perturbing the LiDAR point elevations and recalculating elevation change and carbon loss, iterating this process 1000 times. We calculated a total loss using LiDAR of 1.10 Tg C across the 25 km2 burned area. The fire burned an average of 47 cm deep, equivalent to 44 kg C/m2, a value larger than the 1997 Indonesian peat fires (29 kg C/m2). Carbon loss via the First-Order Fire Effects Model (FOFEM) was estimated to be 0.06 Tg C. Propagating the LiDAR elevation error to the carbon loss estimates, we calculated a standard deviation of 0.00009 Tg C, equivalent to 0.008% of total carbon loss. We conclude that LiDAR elevation error is not a significant contributor to uncertainty in soil carbon loss under severe fire conditions with substantial peat consumption. However, uncertainties may be more substantial when soil elevation loss is of a similar or smaller magnitude than the reported LiDAR error.

Independent evaluation of the SNODAS snow depth product using regional scale LiDAR-derived measurements

Science.gov (United States)

Hedrick, A.; Marshall, H.-P.; Winstral, A.; Elder, K.; Yueh, S.; Cline, D.

2014-06-01

Repeated Light Detection and Ranging (LiDAR) surveys are quickly becoming the de facto method for measuring spatial variability of montane snowpacks at high resolution. This study examines the potential of a 750 km2 LiDAR-derived dataset of snow depths, collected during the 2007 northern Colorado Cold Lands Processes Experiment (CLPX-2), as a validation source for an operational hydrologic snow model. The SNOw Data Assimilation System (SNODAS) model framework, operated by the US National Weather Service, combines a physically-based energy-and-mass-balance snow model with satellite, airborne and automated ground-based observations to provide daily estimates of snowpack properties at nominally 1 km resolution over the coterminous United States. Independent validation data is scarce due to the assimilating nature of SNODAS, compelling the need for an independent validation dataset with substantial geographic coverage. Within twelve distinctive 500 m × 500 m study areas located throughout the survey swath, ground crews performed approximately 600 manual snow depth measurements during each of the CLPX-2 LiDAR acquisitions. This supplied a dataset for constraining the uncertainty of upscaled LiDAR estimates of snow depth at the 1 km SNODAS resolution, resulting in a root-mean-square difference of 13 cm. Upscaled LiDAR snow depths were then compared to the SNODAS-estimates over the entire study area for the dates of the LiDAR flights. The remotely-sensed snow depths provided a more spatially continuous comparison dataset and agreed more closely to the model estimates than that of the in situ measurements alone. Finally, the results revealed three distinct areas where the differences between LiDAR observations and SNODAS estimates were most drastic, suggesting natural processes specific to these regions as causal influences on model uncertainty.

Determinants of acceptance of cervical cancer screening in Dar es Salaam, Tanzania

DEFF Research Database (Denmark)

Kahesa, Crispin; Kjaer, Susanne; Mwaiselage, Julius

2012-01-01

to accept screening in comparison with women who had five or more children (ORs 3.21). Finally, knowledge of cervical cancer and awareness of the existing screening program were also associated with increased acceptance rates (ORs of 5.90 and 4.20). CONCLUSION: There are identifiable subgroups where...... cervical cancer screening can be increased in Dar es Salaam. Special attention should be paid to women of low education and women of high parity. In addition, knowledge and awareness raising campaigns that goes hand in hand with culturally acceptable screening services will likely lead to an increased......ABSTRACT: OBJECTIVE: To describe how demographic characteristics and knowledge of cervical cancer influence screening acceptance among women living in Dar es Salaam, Tanzania. METHODS: Multistage cluster sampling was carried out in 45 randomly selected streets in Dar es Salaam. Women between...

Metabolism of UC-labelled urea in conventional, germ-free and mono-associated rats

Energy Technology Data Exchange (ETDEWEB)

Juhr, N.C.; Franke, J.

1987-01-01

This report deals with the utilization of UC-labelled urea in conventional, defined associated and germ-free rats. With conventional animals 71.44% of the administered UC dose can be demonstrated in the exhaled air, 0.47% in organs and 27.35% in the urine. 1.04% was found in the intestinal and fecal contents. Animals mono-associated with Proteus mirabilis have nearly the same utilization rate (59.15, 0.34, 35.98, 2% resp.). In germ-free animals 1.21% of the activity appeared in the exhaled air and showed a small part of non-enzymatic hydrolysis of urea. The excretion of 97.70% in the urine shows that urea is absorbed from the intestine in germ-free animals.

Key events and their effects on cycling behaviour in Dar-es-Salaam : abstract + powerpoint

OpenAIRE

Nkurunziza, A.; Zuidgeest, M.H.P.; Brussel, M.J.G.; van Maarseveen, M.F.A.M.

2012-01-01

The paper explores key events and investigates their effects on cycling behaviour in the city of Dar-es-Salaam, Tanzania. The objective of the study is to identify specific key events during a person’s life course with a significant effect on change of travel behaviour towards cycling in relation to stage of change. Stage of change is a key construct of the transtheoretical model of behaviour change that defines behavioural readiness (intentions and actions) into six distinct categories (i.e....

2011 USGS Topographic LiDAR: Suwannee River Expansion

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — USGS Task Order No. G10PD00236 USGS Contract No. G10PC00093 The Light Detection and Ranging (LiDAR) dataset is a survey of the Suwannee River Expansion in...

Linearization of germs of hyperbolic vector fields

NARCIS (Netherlands)

Bonckaert, P; Naudot, [No Value; Yang, JZ

2003-01-01

We develop a normal form to express asymptotically a conjugacy between a germ of resonant vector field and its linear part. We show that such an asymptotic expression can be written in terms of functions of the Logarithmic Mourtada type. To cite this article: P Bonckaert et al., C. R. Acad. Sci.

Identification of rat serum alkaline phosphatase isoenzyme by means of wheat germ agglutinin.

Science.gov (United States)

Wada, H; Niwa, N; Hayakawa, T; Tsuge, H

1997-01-01

Wheat germ agglutinin (WGA) precipitates bone type serum alkaline phosphatase (sALP) isoenzyme specifically. The precipitates are composed of the macromolecules of WGA and "bone type sALP" (WGA-ALP complex). In order to use bone type sALP as a marker in polyacrylamide gel electrophoresis (PAGE), a method to separate "bone type sALP" from the "WGA-ALP complex" was established by using N-acetyl-D-glucosamine (GlcNAc)-Sepharose 6E column chromatography. It was concluded that this method is useful for clinical examination in the rat.

Dar clase en el aula. Insidie e risorse nell’insegnamento di lingue affini

Directory of Open Access Journals (Sweden)

Maria Isabella Mininni

2014-06-01

Full Text Available Dar clase en el aula. Risks and opportunities in the teaching of related languages. Spanish, being near to Italian, is often seen as a language easy to learn for Italian native speakers. This kind of prejudice perpetuated by wrong and trivial evaluations is probably the first obstacle that a teacher must overcome in her work; on the other hand, media, especially music and cinema, have made Spanish a so widespread and known language, that the interest of young generations in it has grown rapidly, while only a few years ago it was even excluded, in Italy, from public education. This work proposes some reflections on the methodological frameworks used at present in the teaching of Spanish Language in Italian Secondary School, through a reasoned research conducted with the trainees of the T.F.A., working on recent publications (methods, courses, manuals and on original documents that a teacher of Spanish as a foreign language has at her disposition, with a special attention for the discussion of students’ elaborations of single didactical unities.

Research of Wheat Germ Foaming Capacity in Dairy Ice-Cream Composition

Directory of Open Access Journals (Sweden)

V.V. Martich

2013-09-01

Full Text Available Surface activity of grain component in model systems and in the milk ice cream is investigated. It is found that increase of wheat germ comtent in model systems and mixtures leads to a corresponding decrease in surface tension in the presence of surface-active plant protein. The expediency of previous frying and shredding of plant material to improve its foaming ability in the milk mixtures is proved. The need of wheat germ hydration before its use to improve functional and technological properties in the ice cream is confirmed.

Novel Soy Germ Pasta Enriched in Isoflavones Ameliorates Gastroparesis in Type 2 Diabetes

Science.gov (United States)

Setchell, Kenneth D.R.; Nardi, Elisabetta; Battezzati, Pier-Maria; Asciutti, Stefania; Castellani, Danilo; Perriello, Gabriele; Clerici, Carlo

2013-01-01

OBJECTIVE To determine the effect of soy germ pasta enriched in biologically active isoflavone aglycons on gastric emptying in type 2 diabetic patients with gastroparesis. RESEARCH DESIGN AND METHODS This randomized double-blind, placebo-controlled study compared soy germ pasta with conventional pasta for effects on gastric emptying. Patients (n = 10) with delayed gastric emptying consumed one serving per day of each pasta for 8 weeks, with a 4-week washout. Gastric emptying time (t1/2) was measured using the [13C]octanoic acid breath test at baseline and after each period, and blood glucose and insulin concentrations were determined after oral glucose load. RESULTS Soy germ pasta significantly accelerated the t1/2 in these patients (161.2 ± 17.5 min at baseline vs. 112.6 ± 11.2 min after treatment, P = 0.009). Such change differed significantly (P = 0.009) from that for conventional pasta (153.6 ± 24.2 vs. 156.2 ± 27.4 min), without affecting glucose or insulin concentrations. CONCLUSIONS These findings suggest that soy germ pasta may offer a simple dietary approach to managing diabetic gastropathy. PMID:23835688

Expression of immunohistochemical markers for testicular carcinoma in situ by normal human fetal germ cells

DEFF Research Database (Denmark)

Jørgensen, N; Rajpert-De Meyts, E; Graem, N

1995-01-01

study. EXPERIMENTAL DESIGN: Normal human germ cells from 10 first-trimester fetuses and 76 second- and third-trimester testes were investigated for the immunohistochemical expression of the markers of testicular carcinoma in situ. The panel of markers included in the study consisted of placental......-like alkaline phosphatase, the protooncogene c-kit protein product, and the antigens for the monoclonal antibodies TRA-1-60 and M2A. The relative numbers of fetal germ cells that demonstrated positive reaction with the markers were calculated. RESULTS: The vast majority of the germ cells (75-100%) in the first......-trimester gonads were positive for placental-like alkaline phosphatase, TRA-1-60, and M2A. The c-kit protein was detected in three out of the ten first-trimester gonads. The relative number of germ cells positive for all the markers studied declined rapidly during the first part of the second trimester...

Germs of local automorphisms of real analytic CR structures and analytic dependence on the k-jets

OpenAIRE

ZAITSEV, DMITRI

1997-01-01

PUBLISHED The topic of the paper is the study of germs of local holomorphisms f between Cn and Cn ? such that f(M) #26; M? and df(TcM) = TcM? for M #26; Cn and M? #26; Cn ? generic real-analytic CR submanifolds of arbitrary codimensions. It is proved that for M minimal and M? finitely nondegenerate, such germs depend analytically on their jets. As a corollary, an analytic structure on the set of all germs of this type is obtained.

Spondyloepiphseal dysplasia congenita in siblings born to unaffected parents: ? germ line mosaicism

Energy Technology Data Exchange (ETDEWEB)

Mulla, W.; McDonald-McGinn, D.; Zackai, E. [Univ. of Pennsylvania School of Medicine, Philadelphia, PA (United States)] [and others

1994-09-01

Germ line mosaicism has been used to explain the birth of more than one child affected with a dominantly inherited disorder born to unaffected parents. Furthermore, it has been confirmed clinically in families where recurrence in siblings was originally thought to be autosomal recessive, but were affected individuals have reproduced affected offspring. Firm evidence of germ line mosaicism using mutation analysis by molecular methods exists for some autosomal disorders. We present two siblings with spondyloepipheseal dysplasia congenita (SEDC) born to unaffected parents. This suggests the presence of germ line mosaicism in this entity. Patient 1 was born at 32 weeks gestation to a G1P1 Puerto Rican mother. The pregnancy was complicated by polyhydramnios. The neonate, a short-limbed dwarf, died at 15 hours of age from respiratory distress and a compromised thoracic cavity. Patient 2, the sibling of patient 1 was born at 37 weeks gestation after a pregnancy complicated by polyhydramnios and prenatal ultrasound diagnosis of short-limbed dwarfism. The diagnosis of SEDC was made and, after review of the sibling`s postmortem X-rays, it was felt that she was similarly affected. The family history reveals no history of dwarfism or consanguinity. The SEDC is described as an autosomal dominant form of dwarfism with variable presentation including some cases that have been lethal in the neonatal period. SEDC is now believed to represent a family of collagen II mutations. Sporadic cases that have arisen in families with no history have been ascribed to new heterozygous mutations. Other families in which SEDC and SEMD recurred without a family history most likely represent germ line mosaicism. In these cases molecular studies should be pursued to document a collagen II mutation. We believe that germ line mosaicism is the most plausible explanation for recurrence in our family.

Automatic 3d Building Model Generations with Airborne LiDAR Data

Science.gov (United States)

Yastikli, N.; Cetin, Z.

2017-11-01

LiDAR systems become more and more popular because of the potential use for obtaining the point clouds of vegetation and man-made objects on the earth surface in an accurate and quick way. Nowadays, these airborne systems have been frequently used in wide range of applications such as DEM/DSM generation, topographic mapping, object extraction, vegetation mapping, 3 dimensional (3D) modelling and simulation, change detection, engineering works, revision of maps, coastal management and bathymetry. The 3D building model generation is the one of the most prominent applications of LiDAR system, which has the major importance for urban planning, illegal construction monitoring, 3D city modelling, environmental simulation, tourism, security, telecommunication and mobile navigation etc. The manual or semi-automatic 3D building model generation is costly and very time-consuming process for these applications. Thus, an approach for automatic 3D building model generation is needed in a simple and quick way for many studies which includes building modelling. In this study, automatic 3D building models generation is aimed with airborne LiDAR data. An approach is proposed for automatic 3D building models generation including the automatic point based classification of raw LiDAR point cloud. The proposed point based classification includes the hierarchical rules, for the automatic production of 3D building models. The detailed analyses for the parameters which used in hierarchical rules have been performed to improve classification results using different test areas identified in the study area. The proposed approach have been tested in the study area which has partly open areas, forest areas and many types of the buildings, in Zekeriyakoy, Istanbul using the TerraScan module of TerraSolid. The 3D building model was generated automatically using the results of the automatic point based classification. The obtained results of this research on study area verified that automatic 3D

AUTOMATIC 3D BUILDING MODEL GENERATIONS WITH AIRBORNE LiDAR DATA

Directory of Open Access Journals (Sweden)

N. Yastikli

2017-11-01

Full Text Available LiDAR systems become more and more popular because of the potential use for obtaining the point clouds of vegetation and man-made objects on the earth surface in an accurate and quick way. Nowadays, these airborne systems have been frequently used in wide range of applications such as DEM/DSM generation, topographic mapping, object extraction, vegetation mapping, 3 dimensional (3D modelling and simulation, change detection, engineering works, revision of maps, coastal management and bathymetry. The 3D building model generation is the one of the most prominent applications of LiDAR system, which has the major importance for urban planning, illegal construction monitoring, 3D city modelling, environmental simulation, tourism, security, telecommunication and mobile navigation etc. The manual or semi-automatic 3D building model generation is costly and very time-consuming process for these applications. Thus, an approach for automatic 3D building model generation is needed in a simple and quick way for many studies which includes building modelling. In this study, automatic 3D building models generation is aimed with airborne LiDAR data. An approach is proposed for automatic 3D building models generation including the automatic point based classification of raw LiDAR point cloud. The proposed point based classification includes the hierarchical rules, for the automatic production of 3D building models. The detailed analyses for the parameters which used in hierarchical rules have been performed to improve classification results using different test areas identified in the study area. The proposed approach have been tested in the study area which has partly open areas, forest areas and many types of the buildings, in Zekeriyakoy, Istanbul using the TerraScan module of TerraSolid. The 3D building model was generated automatically using the results of the automatic point based classification. The obtained results of this research on study area verified

Validation of the high-throughput marker technology DArT using the model plant Arabidopsis thaliana

NARCIS (Netherlands)

Wittenberg, A.H.J.; Lee, van der T.A.J.; Cayla, C.; Kilian, A.; Visser, R.G.F.; Schouten, H.J.

2005-01-01

Diversity Arrays Technology (DArT) is a microarray-based DNA marker technique for genome-wide discovery and genotyping of genetic variation. DArT allows simultaneous scoring of hundreds of restriction site based polymorphisms between genotypes and does not require DNA sequence information or

Rubén Darío y la pintura Principio ekfrástico y sinestesia // Rubén Darío and painting: Ekphrastic principle and synesthesia

Directory of Open Access Journals (Sweden)

Alvaro Salvador

2016-12-01

Full Text Available The article examines the relationships between literature and painting in the works of Rubén Darío. The issue is seen in the context of modernis synesthesia, which was strongly present in the literary ideology of the modernist discourse, and it is analyzed with the help of the theories of ekphrasis of Murray Krieger. In Darío’s canonical works painting plays an important role, both in the form of literary references, and the so called “transpositions of art”, in its intent to create a total art.

Histological evidence of testicular dysgenesis in contralateral biopsies from 218 patients with testicular germ cell cancer

DEFF Research Database (Denmark)

Hoei-Hansen, Christina E; Holm, Mette; Rajpert-De Meyts, Ewa

2003-01-01

This study was prompted by a hypothesis that testicular germ cell cancer may be aetiologically linked to other male reproductive abnormalities as a part of the so-called 'testicular dysgenesis syndrome' (TDS). To corroborate the hypothesis of a common association of germ cell cancer with testicular...... dysgenesis, microscopic dysgenetic features were quantified in contralateral testicular biopsies in patients with a testicular germ cell tumour. Two hundred and eighty consecutive contralateral testicular biopsies from Danish patients with testicular cancer diagnosed in 1998-2001 were evaluated...... presenting with testicular germ cell neoplasms of the adolescent and young type. The findings therefore support the hypothesis that this cancer is part of a testicular dysgenesis syndrome. The presence of contralateral carcinoma in situ was higher in the present study than previously reported....

Doubly uniparental inheritance of mitochondria as a model system for studying germ line formation.

Directory of Open Access Journals (Sweden)

Liliana Milani

Full Text Available BACKGROUND: Doubly Uniparental Inheritance (DUI of mitochondria occurs when both mothers and fathers are capable of transmitting mitochondria to their offspring, in contrast to the typical Strictly Maternal Inheritance (SMI. DUI was found in some bivalve molluscs, in which two mitochondrial genomes are inherited, one through eggs, the other through sperm. During male embryo development, spermatozoon mitochondria aggregate in proximity of the first cleavage furrow and end up in the primordial germ cells, while they are dispersed in female embryos. METHODOLOGY/PRINCIPAL FINDINGS: We used MitoTracker, microtubule staining and transmission electron microscopy to examine the mechanisms of this unusual distribution of sperm mitochondria in the DUI species Ruditapes philippinarum. Our results suggest that in male embryos the midbody deriving from the mitotic spindle of the first division concurs in positioning the aggregate of sperm mitochondria. Furthermore, an immunocytochemical analysis showed that the germ line determinant Vasa segregates close to the first cleavage furrow. CONCLUSIONS/SIGNIFICANCE: In DUI male embryos, spermatozoon mitochondria aggregate in a stable area on the animal-vegetal axis: in organisms with spiral segmentation this zone is not involved in cleavage, so the aggregation is maintained. Moreover, sperm mitochondria reach the same embryonic area in which also germ plasm is transferred. In 2-blastomere embryos, the segregation of sperm mitochondria in the same region with Vasa suggests their contribution in male germ line formation. In DUI male embryos, M-type mitochondria must be recognized by egg factors to be actively transferred in the germ line, where they become dominant replacing the Balbiani body mitochondria. The typical features of germ line assembly point to a common biological mechanism shared by DUI and SMI organisms. Although the molecular dynamics of the segregation of sperm mitochondria in DUI species are unknown

Mapping SOC (Soil Organic Carbon) using LiDAR-derived vegetation indices in a random forest regression model

Science.gov (United States)

Will, R. M.; Glenn, N. F.; Benner, S. G.; Pierce, J. L.; Spaete, L.; Li, A.

2015-12-01

Quantifying SOC (Soil Organic Carbon) storage in complex terrain is challenging due to high spatial variability. Generally, the challenge is met by transforming point data to the entire landscape using surrogate, spatially-distributed, variables like elevation or precipitation. In many ecosystems, remotely sensed information on above-ground vegetation (e.g. NDVI) is a good predictor of below-ground carbon stocks. In this project, we are attempting to improve this predictive method by incorporating LiDAR-derived vegetation indices. LiDAR provides a mechanism for improved characterization of aboveground vegetation by providing structural parameters such as vegetation height and biomass. In this study, a random forest model is used to predict SOC using a suite of LiDAR-derived vegetation indices as predictor variables. The Reynolds Creek Experimental Watershed (RCEW) is an ideal location for a study of this type since it encompasses a strong elevation/precipitation gradient that supports lower biomass sagebrush ecosystems at low elevations and forests with more biomass at higher elevations. Sagebrush ecosystems composed of Wyoming, Low and Mountain Sagebrush have SOC values ranging from .4 to 1% (top 30 cm), while higher biomass ecosystems composed of aspen, juniper and fir have SOC values approaching 4% (top 30 cm). Large differences in SOC have been observed between canopy and interspace locations and high resolution vegetation information is likely to explain plot scale variability in SOC. Mapping of the SOC reservoir will help identify underlying controls on SOC distribution and provide insight into which processes are most important in determining SOC in semi-arid mountainous regions. In addition, airborne LiDAR has the potential to characterize vegetation communities at a high resolution and could be a tool for improving estimates of SOC at larger scales.

LiDAR observation of the flow structure in typhoons

Science.gov (United States)

Wu, Yu-Ting; Hsuan, Chung-Yao; Lin, Ta-Hui

2015-04-01

Taiwan is subject to 3.4 landfall typhoons each year in average, generally occurring in the third quarter of every year (July-September). Understanding of boundary-layer turbulence characteristics of a typhoon is needed to ensure the safety of both onshore and offshore wind turbines used for power generation. In this study, a floating LiDAR (Light Detection and Ranging) was deployed in a harbor to collect data of wind turbulence, atmospheric pressure, and temperature in three typhoon events (Matmo typhoon, Soulik typhoon, Trami typhoon). Data collected from the floating LiDAR and from meteorological stations located at Taipei, Taichung and Kaohsiung are adopted to analyse the wind turbulence characteristics in the three typhoon events. The measurement results show that the maximum 10-min average wind speed measured with the floating LiDAR is up to 24 m/s at a height of 200 m. Compared with other normal days, the turbulence intensity is lower in the three typhoon events where the wind speed has a rapid increase. Changes of wind direction take place clearly as the typhoons cross Taiwan from East to West. Within the crossing intervals, the vertical momentum flux is observed to have a significant pattern with both upward and downward propagating waves which are relevant to the flow structure of the typhoons.

Quantifying spatial distribution of snow depth errors from LiDAR using Random Forests

Science.gov (United States)

Tinkham, W.; Smith, A. M.; Marshall, H.; Link, T. E.; Falkowski, M. J.; Winstral, A. H.

2013-12-01

There is increasing need to characterize the distribution of snow in complex terrain using remote sensing approaches, especially in isolated mountainous regions that are often water-limited, the principal source of terrestrial freshwater, and sensitive to climatic shifts and variations. We apply intensive topographic surveys, multi-temporal LiDAR, and Random Forest modeling to quantify snow volume and characterize associated errors across seven land cover types in a semi-arid mountainous catchment at a 1 and 4 m spatial resolution. The LiDAR-based estimates of both snow-off surface topology and snow depths were validated against ground-based measurements across the catchment. Comparison of LiDAR-derived snow depths to manual snow depth surveys revealed that LiDAR based estimates were more accurate in areas of low lying vegetation such as shrubs (RMSE = 0.14 m) as compared to areas consisting of tree cover (RMSE = 0.20-0.35 m). The highest errors were found along the edge of conifer forests (RMSE = 0.35 m), however a second conifer transect outside the catchment had much lower errors (RMSE = 0.21 m). This difference is attributed to the wind exposure of the first site that led to highly variable snow depths at short spatial distances. The Random Forest modeled errors deviated from the field measured errors with a RMSE of 0.09-0.34 m across the different cover types. Results show that snow drifts, which are important for maintaining spring and summer stream flows and establishing and sustaining water-limited plant species, contained 30 × 5-6% of the snow volume while only occupying 10% of the catchment area similar to findings by prior physically-based modeling approaches. This study demonstrates the potential utility of combining multi-temporal LiDAR with Random Forest modeling to quantify the distribution of snow depth with a reasonable degree of accuracy. Future work could explore the utility of Terrestrial LiDAR Scanners to produce validation of snow-on surface

Detection of large above-ground biomass variability in lowland forest ecosystems by airborne LiDAR

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J. Jubanski

2013-06-01

Full Text Available Quantification of tropical forest above-ground biomass (AGB over large areas as input for Reduced Emissions from Deforestation and forest Degradation (REDD+ projects and climate change models is challenging. This is the first study which attempts to estimate AGB and its variability across large areas of tropical lowland forests in Central Kalimantan (Indonesia through correlating airborne light detection and ranging (LiDAR to forest inventory data. Two LiDAR height metrics were analysed, and regression models could be improved through the use of LiDAR point densities as input (R2 = 0.88; n = 52. Surveying with a LiDAR point density per square metre of about 4 resulted in the best cost / benefit ratio. We estimated AGB for 600 km of LiDAR tracks and showed that there exists a considerable variability of up to 140% within the same forest type due to varying environmental conditions. Impact from logging operations and the associated AGB losses dating back more than 10 yr could be assessed by LiDAR but not by multispectral satellite imagery. Comparison with a Landsat classification for a 1 million ha study area where AGB values were based on site-specific field inventory data, regional literature estimates, and default values by the Intergovernmental Panel on Climate Change (IPCC showed an overestimation of 43%, 102%, and 137%, respectively. The results show that AGB overestimation may lead to wrong greenhouse gas (GHG emission estimates due to deforestation in climate models. For REDD+ projects this leads to inaccurate carbon stock estimates and consequently to significantly wrong REDD+ based compensation payments.

Non-germ cell tumours arising in germ cell tumours (teratoma with malignant transformation) in men: CT and MR findings

Energy Technology Data Exchange (ETDEWEB)

Athanasiou, A. [Department of Radiology, Institut Gustave-Roussy, Villejuif (France); Department of Radiology, Institut Curie, Paris (France)], E-mail: alexandra.athanasiou@curie.net; Vanel, D. [Department of Radiology, Institut Gustave-Roussy, Villejuif (France); Department of Radiology, Istituti Ortopedici Rizzoli, Bologna (Italy); El Mesbahi, O. [Department of Medicine, Institut Gustave-Roussy, Villejuif (France); Theodore, C. [Department of Medicine, Institut Gustave-Roussy, Villejuif (France); Department of Oncology, Hopital Foch, Suresnes (France); Fizazi, K. [Department of Medicine, Institut Gustave-Roussy, Villejuif (France)

2009-02-15

Purpose: To describe the imaging findings of germ cell tumours (GCT) containing non-germ cell malignant components (also designated teratoma with malignant transformation or TMT). Patients and methods: The records of 14 male patients with GCT and a non-germ cell histological component TMT were retrospectively reviewed. All patients had computed tomography (CT) and/or magnetic resonance (MR) studies before and after initial surgery and chemotherapy, as well as during follow-up. Imaging findings were correlated with the response to treatment and with overall survival. Pathological evaluation, immunohistochemistry, serum alpha-fetoprotein (AFP) and human chorionic gonadotropin (HCG) were also taken into consideration. Sarcoma was identified in 10 out of 14 patients, with rhabdomyosarcoma ranking first (n = 4), followed by osteosarcoma (n = 2), fusiform cell sarcoma (n = 1), undifferentiated sarcoma (n = 1), neurosarcoma (n = 1) and myxoid sarcoma (n = 1). Other histological types of malignant transformation included adenocarcinoma (n = 3) and bronchoalveolar carcinoma (n = 1). Overall, 9 patients relapsed at a median time of 84 months (range 60-168). Results: Non-GCT malignant transformation was identified in the retroperitoneum (5), testis (3), mediastinum (3), peritoneum (2) and lungs (1). The CT and MR imaging findings before treatment and after relapse were evaluated with emphasis on imaging features that could possibly imply the presence of malignant transformation (heterogeneously enhancing soft-tissue masses, ossified masses with calcified lymph nodes, diffuse epiploic thickening associated with ascites and peritoneal nodules, pulmonary alveolar infiltration with septal thickening). All but 1 patient with TMT presented with nodal and distant metastases. The prognosis was poor: within a median follow-up of 59 months (range 3-180), 4 out of 14 patients were alive. Conclusion: TMT is rare and associated with poorer survival compared to GCT. Imaging can be useful

Land Cover Segmentation of Airborne LiDAR Data Using Stochastic Atrous Network

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Hasan Asy’ari Arief

2018-06-01

Full Text Available Inspired by the success of deep learning techniques in dense-label prediction and the increasing availability of high precision airborne light detection and ranging (LiDAR data, we present a research process that compares a collection of well-proven semantic segmentation architectures based on the deep learning approach. Our investigation concludes with the proposition of some novel deep learning architectures for generating detailed land resource maps by employing a semantic segmentation approach. The contribution of our work is threefold. (1 First, we implement the multiclass version of the intersection-over-union (IoU loss function that contributes to handling highly imbalanced datasets and preventing overfitting. (2 Thereafter, we propose a novel deep learning architecture integrating the deep atrous network architecture with the stochastic depth approach for speeding up the learning process, and impose a regularization effect. (3 Finally, we introduce an early fusion deep layer that combines image-based and LiDAR-derived features. In a benchmark study carried out using the Follo 2014 LiDAR data and the NIBIO AR5 land resources dataset, we compare our proposals to other deep learning architectures. A quantitative comparison shows that our best proposal provides more than 5% relative improvement in terms of mean intersection-over-union over the atrous network, providing a basis for a more frequent and improved use of LiDAR data for automatic land cover segmentation.

LESTO: an Open Source GIS-based toolbox for LiDAR analysis

Science.gov (United States)

Franceschi, Silvia; Antonello, Andrea; Tonon, Giustino

2015-04-01

During the last five years different research institutes and private companies stared to implement new algorithms to analyze and extract features from LiDAR data but only a few of them also created a public available software. In the field of forestry there are different examples of software that can be used to extract the vegetation parameters from LiDAR data, unfortunately most of them are closed source (even if free), which means that the source code is not shared with the public for anyone to look at or make changes to. In 2014 we started the development of the library LESTO (LiDAR Empowered Sciences Toolbox Opensource): a set of modules for the analysis of LiDAR point cloud with an Open Source approach with the aim of improving the performance of the extraction of the volume of biomass and other vegetation parameters on large areas for mixed forest structures. LESTO contains a set of modules for data handling and analysis implemented within the JGrassTools spatial processing library. The main subsections are dedicated to 1) preprocessing of LiDAR raw data mainly in LAS format (utilities and filtering); 2) creation of raster derived products; 3) flight-lines identification and normalization of the intensity values; 4) tools for extraction of vegetation and buildings. The core of the LESTO library is the extraction of the vegetation parameters. We decided to follow the single tree based approach starting with the implementation of some of the most used algorithms in literature. These have been tweaked and applied on LiDAR derived raster datasets (DTM, DSM) as well as point clouds of raw data. The methods range between the simple extraction of tops and crowns from local maxima, the region growing method, the watershed method and individual tree segmentation on point clouds. The validation procedure consists in finding the matching between field and LiDAR-derived measurements at individual tree and plot level. An automatic validation procedure has been developed

Development of digital subtraction system DAR-1200

International Nuclear Information System (INIS)

Kawai, Masumi; Shimizu, Yasumitsu; Ozaki, Takeshi; Sawada, Hiroshi; Uzuyama, Kazuhiro; Nishioka, Hiroyuki

1989-01-01

Digital subtraction angiography (DSA) has been of widespread use clinically, and it has attracted considerable attention in angiographic examination today. The merits of Shimadzu high resolution digital subtraction system DAR-1200 are reported in this paper. Furthermore, the principle and clinical usefullness of a new method of DSA called the Peak-Hold DSA are explained especially in details. (author)

The Bile Acid Nuclear Receptor FXRα Is a Critical Regulator of Mouse Germ Cell Fate

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Emmanuelle Martinot

2017-07-01

Full Text Available Spermatogenesis is the process by which spermatozoa are generated from spermatogonia. This cell population is heterogeneous, with self-renewing spermatogonial stem cells (SSCs and progenitor spermatogonia that will continue on a path of differentiation. Only SSCs have the ability to regenerate and sustain spermatogenesis. This makes the testis a good model to investigate stem cell biology. The Farnesoid X Receptor alpha (FXRα was recently shown to be expressed in the testis. However, its global impact on germ cell homeostasis has not yet been studied. Here, using a phenotyping approach in Fxrα−/− mice, we describe unexpected roles of FXRα on germ cell physiology independent of its effects on somatic cells. FXRα helps establish and maintain an undifferentiated germ cell pool and in turn influences male fertility. FXRα regulates the expression of several pluripotency factors. Among these, in vitro approaches show that FXRα controls the expression of the pluripotency marker Lin28 in the germ cells.

TOPAZ1, a novel germ cell-specific expressed gene conserved during evolution across vertebrates.

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Adrienne Baillet

Full Text Available BACKGROUND: We had previously reported that the Suppression Subtractive Hybridization (SSH approach was relevant for the isolation of new mammalian genes involved in oogenesis and early follicle development. Some of these transcripts might be potential new oocyte and granulosa cell markers. We have now characterized one of them, named TOPAZ1 for the Testis and Ovary-specific PAZ domain gene. PRINCIPAL FINDINGS: Sheep and mouse TOPAZ1 mRNA have 4,803 bp and 4,962 bp open reading frames (20 exons, respectively, and encode putative TOPAZ1 proteins containing 1,600 and 1653 amino acids. They possess PAZ and CCCH domains. In sheep, TOPAZ1 mRNA is preferentially expressed in females during fetal life with a peak during prophase I of meiosis, and in males during adulthood. In the mouse, Topaz1 is a germ cell-specific gene. TOPAZ1 protein is highly conserved in vertebrates and specifically expressed in mouse and sheep gonads. It is localized in the cytoplasm of germ cells from the sheep fetal ovary and mouse adult testis. CONCLUSIONS: We have identified a novel PAZ-domain protein that is abundantly expressed in the gonads during germ cell meiosis. The expression pattern of TOPAZ1, and its high degree of conservation, suggests that it may play an important role in germ cell development. Further characterization of TOPAZ1 may elucidate the mechanisms involved in gametogenesis, and particularly in the RNA silencing process in the germ line.

The effects of humanin and its analogues on male germ cell apoptosis induced by chemotherapeutic drugs.

Science.gov (United States)

Jia, Yue; Ohanyan, Aikoui; Lue, Yan-He; Swerdloff, Ronald S; Liu, Peter Y; Cohen, Pinchas; Wang, Christina

2015-04-01

Human (HN) prevents stress-induced apoptosis in many cells/tissues. In this study we showed that HN ameliorated chemotherapy [cyclophosphamide (CP) and Doxorubicin (DOX)]-induced male germ cell apoptosis both ex vivo in seminiferous tubule cultures and in vivo in the testis. HN acts by several putative mechanisms via binding to: an IL-12 like trimeric membrane receptor; BAX; or insulin-like growth factor binding protein-3 (IGFBP-3, a proapoptotic factor). To understand the mechanisms of HN on male germ cell apoptosis, we studied five HN analogues including: HNG (HN-S14G, a potent agonist), HNG-F6A (no binding to IGFBP-3), HN-S7A (no self-dimerization), HN-C8P (no binding to BAX), and HN-L12A (a HN antagonist) on CP-induced male germ cell apoptosis in mice. CP-induced germ cell apoptosis was inhibited by HN, HNG, HNG-F6A, HN-S7A, and HN-C8P (less effective); but not by HN-L12A. HN-L12A, but not HN-S7A or HN-C8P, blocked the protective effect of HN against CP-induced male germ cell apoptosis. HN, HN-S7A, and HN-C8P restored CP-suppressed STAT3 phosphorylation. These results suggest that HN: (1) decreases DOX (ex vivo) and CP (in vivo) induced male germ cell apoptosis; (2) action is mediated by the membrane receptor/STAT3 with minor contribution by BAX-binding pathway; (3) self-dimerization or binding to IGFBP-3 may not be involved in HN's effect in testis. HN is an important molecule in the regulation of germ cell homeostasis after injury and agonistic analogues may be developed for treating male infertility or protection against chemotherapy side effects.

Mapping of landslides under dense vegetation cover using object - oriented analysis and LiDAR derivatives

NARCIS (Netherlands)

Van Den Eeckhout, Miet; Kerle, N.; Hervas, Javier; Supper, Robert; Margottini, C.; Canuti, P.; Sassa, K.

2013-01-01

Light Detection and Ranging (LiDAR) and its wide range of derivative products have become a powerful tool in landslide research, particularly for landslide identification and landslide inventory mapping. In contrast to the many studies that use expert-based analysis of LiDAR derivatives to identify

The emerging phenotype of the testicular carcinoma in situ germ cell

DEFF Research Database (Denmark)

Rajpert-De Meyts, Ewa; Bartkova, Jirina; Samson, Michel

2003-01-01

This review summarises the existing knowledge on the phenotype of the carcinoma in situ (CIS) cell. CIS is a common pre-invasive precursor of testicular germ cell tumours of adolescents and young adults. These tumours display a variety of histological forms. Classical seminoma proliferates along...... of differentiation and pluripotency, CIS cells found in adult patients seem to be predestined for further malignant progression into one or the other of the two main types of overt tumours. A new concept of phenotypic continuity of differentiation of germ cells along germinal lineage with a gradual loss of embryonic...

Diagnostic markers for germ cell neoplasms

DEFF Research Database (Denmark)

Rajpert-De Meyts, Ewa; Nielsen, John E; Skakkebaek, Niels E

2015-01-01

This concise review summarises tissue and serum markers useful for differential diagnosis of germ cell tumours (GCTs), with focus on the most common testicular GCTs (TGCTs). GCTs are characterised by phenotypic heterogeneity due to largely retained embryonic pluripotency and aberrant somatic diff...... of molecular markers, which allow specific diagnosis of various subtypes of GCT and are very useful for early detection at the precursor stage and for monitoring of patients during the follow-up....

The Extraction of Vegetation Points from LiDAR Using 3D Fractal Dimension Analyses

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Haiquan Yang

2015-08-01

Full Text Available Light Detection and Ranging (LiDAR, a high-precision technique used for acquiring three-dimensional (3D surface information, is widely used to study surface vegetation information. Moreover, the extraction of a vegetation point set from the LiDAR point cloud is a basic starting-point for vegetation information analysis, and an important part of its further processing. To extract the vegetation point set completely and to describe the different spatial morphological characteristics of various features in a LiDAR point cloud, we have used 3D fractal dimensions. We discovered that every feature has its own distinctive 3D fractal dimension interval. Based on the 3D fractal dimensions of tall trees, we propose a new method for the extraction of vegetation using airborne LiDAR. According to this method, target features can be distinguished based on their morphological characteristics. The non-ground points acquired by filtering are processed by region growing segmentation and the morphological characteristics are evaluated by 3D fractal dimensions to determine the features required for the determination of the point set for tall trees. Avon, New York, USA was selected as the study area to test the method and the result proves the method’s efficiency. Thus, this approach is feasible. Additionally, the method uses the 3D coordinate properties of the LiDAR point cloud and does not require additional information, such as return intensity, giving it a larger scope of application.

In Vitro Modeling of Human Germ Cell Development Using Pluripotent Stem Cells

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Yuncheng Zhao

2018-02-01

Full Text Available Summary: Due to differences across species, the mechanisms of cell fate decisions determined in mice cannot be readily extrapolated to humans. In this study, we developed a feeder- and xeno-free culture protocol that efficiently induced human pluripotent stem cells (iPSCs into PLZF+/GPR125+/CD90+ spermatogonium-like cells (SLCs. These SLCs were enriched with key genes in germ cell development such as MVH, DAZL, GFRα1, NANOS3, and DMRT1. In addition, a small fraction of SLCs went through meiosis in vitro to develop into haploid cells. We further demonstrated that this chemically defined induction protocol faithfully recapitulated the features of compromised germ cell development of PSCs with NANOS3 deficiency or iPSC lines established from patients with non-obstructive azoospermia. Taken together, we established a powerful experimental platform to investigate human germ cell development and pathology related to male infertility. : In this article, Wang and colleagues established a feeder- and xeno-free system to robustly induce human pluripotent stem cells (PSCs into spermatogonia-like cells. This chemically defined induction protocol faithfully recapitulated the features of compromised germ cell development of PSCs with NANOS3 deficiency or iPSC lines established from patients with non-obstructive azoospermia. Keywords: pluripotent stem cells, spermatogonia, infertility, non-obstructive azoospermia

Antibiogram of E. coli serotypes isolated from children aged under ...

African Journals Online (AJOL)

Antibiogram of E. coli serotypes isolated from children aged under five with acute diarrhea in Bahir Dar town. Ayrikim Adugna1, Mulugeta Kibret1, Bayeh Abera2, Endalkachew Nibret1, Melaku Adal1. 1. Department of Biology, Science College, Bahir Dar University. 2. Department of Microbiology, Parasitology and ...

Effects of LiDAR point density, sampling size and height threshold on estimation accuracy of crop biophysical parameters.

Science.gov (United States)

Luo, Shezhou; Chen, Jing M; Wang, Cheng; Xi, Xiaohuan; Zeng, Hongcheng; Peng, Dailiang; Li, Dong

2016-05-30

Vegetation leaf area index (LAI), height, and aboveground biomass are key biophysical parameters. Corn is an important and globally distributed crop, and reliable estimations of these parameters are essential for corn yield forecasting, health monitoring and ecosystem modeling. Light Detection and Ranging (LiDAR) is considered an effective technology for estimating vegetation biophysical parameters. However, the estimation accuracies of these parameters are affected by multiple factors. In this study, we first estimated corn LAI, height and biomass (R2 = 0.80, 0.874 and 0.838, respectively) using the original LiDAR data (7.32 points/m2), and the results showed that LiDAR data could accurately estimate these biophysical parameters. Second, comprehensive research was conducted on the effects of LiDAR point density, sampling size and height threshold on the estimation accuracy of LAI, height and biomass. Our findings indicated that LiDAR point density had an important effect on the estimation accuracy for vegetation biophysical parameters, however, high point density did not always produce highly accurate estimates, and reduced point density could deliver reasonable estimation results. Furthermore, the results showed that sampling size and height threshold were additional key factors that affect the estimation accuracy of biophysical parameters. Therefore, the optimal sampling size and the height threshold should be determined to improve the estimation accuracy of biophysical parameters. Our results also implied that a higher LiDAR point density, larger sampling size and height threshold were required to obtain accurate corn LAI estimation when compared with height and biomass estimations. In general, our results provide valuable guidance for LiDAR data acquisition and estimation of vegetation biophysical parameters using LiDAR data.

Unveiling topographical changes using LiDAR mapping capability: case study of Belaga in Sarawak, East-Malaysia

Science.gov (United States)

Ganendra, T. R.; Khan, N. M.; Razak, W. J.; Kouame, Y.; Mobarakeh, E. T.

2016-06-01

The use of Light Detection and Ranging (LiDAR) remote sensing technology to scan and map landscapes has proven to be one of the most popular techniques to accurately map topography. Thus, LiDAR technology is the ultimate method of unveiling the surface feature under dense vegetation, and, this paper intends to emphasize the diverse techniques that can be utilized to elucidate topographical changes over the study area, using multi-temporal airborne full waveform LiDAR datasets collected in 2012 and 2014. Full waveform LiDAR data offers access to an almost unlimited number of returns per shot, which enables the user to explore in detail topographical changes, such as vegetation growth measurement. The study also found out topography changes at the study area due to earthwork activities contributing to soil consolidation, soil erosion and runoff, requiring cautious monitoring. The implications of this study not only concurs with numerous investigations undertaken by prominent researchers to improve decision making, but also corroborates once again that investigations employing multi-temporal LiDAR data to unveil topography changes in vegetated terrains, produce more detailed and accurate results than most other remote sensing data.

Malignant primary germ-cell tumor of the brain: case report

Energy Technology Data Exchange (ETDEWEB)

Yamamoto, Toyoshiro; Sato, Shinichi; Nakao, Satoshi; Ban, Sadahiko; Namba, Koh (Kobe Municipal Central Hospital (Japan))

1983-04-01

The unusual case of a 15 year old boy with three discrete paraventricular germ-cell tumors is reported. The first tumor was located just lateral to the left thalamus and included a massive cystic part around it, the second tumor in the paraventricular region above the head of the left caudate nucleus and the third tumor in the medial part of the left parietal lobe. Total removal of all tumors was successfully accomplished in stages at four separate operations, namely, the first tumor was removed through the left transsylvian approach, the second tumor via left superior frontal gyrus and the third tumor via left superior frontal gyrus and left superior parietal lobule. Histological examination revealed that the first tumor was teratoma, the second was choriocarcinoma and the third was germinoma. Primary germ-cell tumors of the brain can be divided into 5 groups: 1) germinoma; 2) embryonal carcinoma; 3) choriocarcinoma; 4) yolk-sac tumor; or 5) teratoma. In this case, a combination of three different histological patterns was seen. If malignant germ-cell tumor is supected on CT, aggressive extirpation should be done, not only to determine the exact diagnosis, but also to provide the basis for subsequent adjunctive therapy.

Retrieving aboveground biomass of wetland Phragmites australis (common reed) using a combination of airborne discrete-return LiDAR and hyperspectral data

Science.gov (United States)

Luo, Shezhou; Wang, Cheng; Xi, Xiaohuan; Pan, Feifei; Qian, Mingjie; Peng, Dailiang; Nie, Sheng; Qin, Haiming; Lin, Yi

2017-06-01

Wetland biomass is essential for monitoring the stability and productivity of wetland ecosystems. Conventional field methods to measure or estimate wetland biomass are accurate and reliable, but expensive, time consuming and labor intensive. This research explored the potential for estimating wetland reed biomass using a combination of airborne discrete-return Light Detection and Ranging (LiDAR) and hyperspectral data. To derive the optimal predictor variables of reed biomass, a range of LiDAR and hyperspectral metrics at different spatial scales were regressed against the field-observed biomasses. The results showed that the LiDAR-derived H_p99 (99th percentile of the LiDAR height) and hyperspectral-calculated modified soil-adjusted vegetation index (MSAVI) were the best metrics for estimating reed biomass using the single regression model. Although the LiDAR data yielded a higher estimation accuracy compared to the hyperspectral data, the combination of LiDAR and hyperspectral data produced a more accurate prediction model for reed biomass (R2 = 0.648, RMSE = 167.546 g/m2, RMSEr = 20.71%) than LiDAR data alone. Thus, combining LiDAR data with hyperspectral data has a great potential for improving the accuracy of aboveground biomass estimation.

Erythropoietin may reduce the risk of germ cell loss in boys with cryptorchidism

DEFF Research Database (Denmark)

Cortes, D; Visfeldt, J; Thorup, J M

2001-01-01

of infertility. In order to increase the number of germ cells, and thereby the fertility potential, additional hormonal therapy has been attempted before surgery. In a study, small doses of the gonadotropin-releasing hormone analogue buserelin before orchiopexy caused higher values. Others have found......: Erythropoietin (Eprex) 100 IU/kg were administered subcutaneously weekly for 3 months prior to surgery in two cryptorchid boys, 6 months old and 1 year 9 months old, respectively, with renal function impairment. RESULTS: The number of spermatogonia per tubular cross-section in testicular biopsies was unusually...... that hormonal treatment with human chorionic gonadotropin or gonadotropin releasing hormone analogue may harm the germ cells in cryptorchidism. The aim of the study is to demonstrate that additional hormonal therapy with erythropoietin has a positive effect on the number of germ cells. MATERIALS AND METHODS...

Concurrent development of testicular seminoma and choriocarcinoma of the superior mediastinum, presented as cervical mass: a case report and implications about pathogenesis of germ-cell tumours

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Bamias Aristotelis

2006-11-01

Full Text Available Abstract Background Synchronous presentation of more than one germ cell tumours of different histology in the same patient is considered to be very rare. In these cases of multiple germ cell tumours, strong theoretical and clinical data suggest an underlying common pathogenetic mechanism concerning genetic instability or abnormalities during the pluripotent embryonic differentiation and maturation of the germ cell. Case presentation A 25 year-old young man presented with an enlarging, slightly painful left cervical mass. Despite the initial disorientation of the diagnosis to a possible thyroid disorder, the patient underwent complete surgical resection of the mass revealing mediastinal choriocarcinoma. Subsequent ultrasound of the scrotum indicated the presence of a small lobular node in the upper pole of the left testicle and the patient underwent radical left inguinal orchiectomy disclosing a typical seminoma. Based on these results, the patient received 4 cycles of Bleomycin, Etoposide and Platinum chemotherapy experiencing only mild toxicity and resulting in complete ongoing clinical and biochemical remission. Conclusion The pathogenesis of concurrent germ cell tumours in the same patient remains an area of controversy. Although the genetic instability of the pluripotent germ cell offers an adequate explanation, the possibility of metastasis from the primary, less differentiated tumour to a distant location as a more mature subtype cannot be excluded. Possible development of a metastatic site of different histology and thus biological behaviour (e.g choriocarcinoma should be anticipated. Furthermore, urologists, pathologists and medical oncologists should be meticulous in the original pathological diagnosis in these patients, since there is a significant frequency of germ cell tumours with mixed or overlapping histological elements with diverse potential of evolution and differentiation.

Pulmonary Function in Patients With Germ Cell Cancer Treated With Bleomycin, Etoposide, and Cisplatin

DEFF Research Database (Denmark)

Lauritsen, Jakob; Kier, Maria Gry Gundgaard; Bandak, Mikkel

2016-01-01

PURPOSE: For patients with germ cell cancer, various pulmonary toxicity risk factors have been hypothesized for treatment with bleomycin, etoposide, and cisplatin (BEP). Because existing studies have shortcomings, we present a large, unselected cohort of patients who have undergone close monitoring...... expiratory volume in 1 second and forced vital capacity remained unchanged after BEP but increased significantly to levels above pretreatment during follow-up. International Germ Cell Cancer Collaborative Group (IGCCCG) prognostic group, mediastinal primary, pulmonary metastases, and smoking all...... PFT. CONCLUSION: After 5 years of follow-up, pulmonary impairment in patients with germ cell cancer who were treated with BEP was limited. Exceptions were patients treated with pulmonary surgery, those who suffered pulmonary embolism, and those in the IGCCCG poor prognostic group....

Metabolism of 14C-labelled urea in conventional, germ-free and mono-associated rats

International Nuclear Information System (INIS)

Juhr, N.C.; Franke, J.

1987-01-01

This report deals with the utilization of 14 C-labelled urea in conventional, defined associated and germ-free rats. With conventional animals 71.44% of the administered 14 C dose can be demonstrated in the exhaled air, 0.47% in organs and 27.35% in the urine. 1.04% were found in the intestinal and fecal contents. Animals mono-associated with Proteus mirabilis have nearly the same utilization rate (59.15, 0.34, 35.98, 2% resp.). In germ-free animals 1.21% of the activity appeared in the exhaled air and showed a small part of non-enzymatic hydrolysis of urea. The excretion of 97.70% in the urine shows, that urea is absorbed from the intestine in germ-free animals. (author)

In vitro differentiation of primordial germ cells and oocyte-like cells from stem cells.

Science.gov (United States)

Costa, José J N; Souza, Glaucinete B; Soares, Maria A A; Ribeiro, Regislane P; van den Hurk, Robert; Silva, José R V

2018-02-01

Infertility is the result of failure due to an organic disorder of the reproductive organs, especially their gametes. Recently, much progress has been made on generating germ cells, including oocytes, from various types of stem cells. This review focuses on advances in female germ cell differentiation from different kinds of stem cells, with emphasis on embryonic stem cells, adult stem cells, and induced pluripotent stem cells. The advantages and disadvantages of the derivation of female germ cells from several types of stem cells are also highlighted, as well as the ability of stem cells to generate mature and functional female gametes. This review shows that stem cell therapies have opened new frontiers in medicine, especially in the reproductive area, with the possibility of regenerating fertility.

Object Tracking with LiDAR: Monitoring Taxiing and Landing Aircraft

Directory of Open Access Journals (Sweden)

Zoltan Koppanyi

2018-02-01

Full Text Available Mobile light detection and ranging (LiDAR sensors used in car navigation and robotics, such as the Velodyne’s VLP-16 and HDL-32E, allow for sensing the surroundings of the platform with high temporal resolution to detect obstacles, tracking objects and support path planning. This study investigates the feasibility of using LiDAR sensors for tracking taxiing or landing aircraft close to the ground to improve airport safety. A prototype system was developed and installed at an airfield to capture point clouds to monitor aircraft operations. One of the challenges of accurate object tracking using the Velodyne sensors is the relatively small vertical field of view (30°, 41.3° and angular resolution (1.33°, 2°, resulting in a small number of points of the tracked object. The point density decreases with the object–sensor distance, and is already sparse at a moderate range of 30–40 m. The paper introduces our model-based tracking algorithms, including volume minimization and cube trajectories, to address the optimal estimation of object motion and tracking based on sparse point clouds. Using a network of sensors, multiple tests were conducted at an airport to assess the performance of the demonstration system and the algorithms developed. The investigation was focused on monitoring small aircraft moving on runways and taxiways, and the results indicate less than 0.7 m/s and 17 cm velocity and positioning accuracy achieved, respectively. Overall, based on our findings, this technology is promising not only for aircraft monitoring but for airport applications.

Multiplicity of Buc copies in Atlantic salmon contrasts with loss of the germ cell determinant in primates, rodents and axolotl

OpenAIRE

Skugor, Adrijana; Tveiten, Helge; Johnsen, Hanne; Andersen, Øivind

2016-01-01

Background The primordial germ cells (PGCs) giving rise to gametes are determined by two different mechanisms in vertebrates. While the germ cell fate in mammals and salamanders is induced by zygotic signals, maternally delivered germ cell determinants specify the PGCs in birds, frogs and teleost fish. Assembly of the germ plasm in the oocyte is organized by the single Buc in zebrafish, named Velo1 in Xenopus, and by Oskar in Drosophila. Secondary loss of oskar in several insect lineages coin...

Intussusception in children seen at Muhimbili National Hospital, Dar ...

African Journals Online (AJOL)

Intussusception in children seen at Muhimbili National Hospital, Dar es salaam. ... its magnitude of concern and any seasonal variation in our environment. ... majority of the children present late, >48 hours from the onset of symptoms and ...

Airborne LiDAR reflective linear feature extraction for strip adjustment and horizontal accuracy determination : executive summary.

Science.gov (United States)

2009-02-01

The Office of Aerial Engineering (OAE) has been : using an Optech 30/70 ALTM airborne LiDAR system : for about four years. The introduction of LiDAR : technology was a major development towards : improving the mapping operations, and the overall : ex...

Differentiation of primordial germ cells from induced pluripotent stem cells of primary ovarian insufficiency.

Science.gov (United States)

Leng, Lizhi; Tan, Yueqiu; Gong, Fei; Hu, Liang; Ouyang, Qi; Zhao, Yan; Lu, Guangxiu; Lin, Ge

2015-03-01

Can the induced pluripotent stem cells (iPSCs) derived from women with primary ovarian insufficiency (POI) differentiate into germ cells for potential disease modeling in vitro? The iPSC lines derived from POI patients with 46, X, del(X)(q26) or 46, X, del(X)(q26)9qh+ could differentiate into germ cells and expressed lower levels of genes in the deletion region of the X chromosome. iPSC technology has been envisioned as an approach for generating patient-specific stem cells for disease modeling and for developing novel therapies. It has also been confirmed that iPSCs differentiate into germ cells. We compared the differentiation ability of germ cells and the gene expression level of germ cell-related genes in the X chromosome deletion region of iPSC lines derived from POI patients (n = 2) with an iPSC line derived from normal fibroblasts (n = 1). We established three iPSC lines from two patients with partial Xq deletion-induced POI and normal fibroblasts by overexpressing four factors: octamer-binding transcription factor 4 (OCT4), sex-determining region Y-box 2 (SOX2), Nanog homeobox (NANOG), and lin-28 homolog (LIN28), using lentiviral vectors. We then generated stable-transfected fluorescent reporter cell lines under the control of the Asp-Glu-Ala-Asp box polypeptide 4 (DDX4, also called VASA) promoter, and selected clonal derived sublines. We induced subline differentiation into germ cells by adding Wnt3a (30 ng/ml) and bone morphogenetic protein 4 (100 ng/ml). After 12 days of differentiation, green fluorescent protein (GFP)-positive and GFP-negative cells were isolated via fluorescence-activated cell sorting and analyzed for endogenous VASA protein (immunostaining) and for germ cell markers and genes expressed in the deleted region of the X chromosome (quantitative RT-PCR). The POI- and normal fibroblast-derived iPSCs had typical self-renewal and pluripotency characteristics. After stable transfection with the VASA-GFP construct, the sublines POI1-iPS-V.1

a Darío Bentancurt, el de la novísima historia

Directory of Open Access Journals (Sweden)

Javier Guerreo Barrón

1999-01-01

Full Text Available Ha perdido Colombia, y de que forma, a muchos de sus mejores hombres y mujeres y recientemente, el turno macabro le tocó a la inteligencia. Darío Betancourt Echeverry, nació en Restrepo, Valle, el 10 de diciembre de 1952. Estudió Ciencias Sociales en la Universidad Nacional y en la Universidad Libre. Su primera etapa profesional trasegó sobre la historia colonial y el movimiento Comunero, de la cual quedan dos obras: "Historia de Colombia" Colonial,(Bogotá, Universidad Santo Tomás, 1985 e "Historia de la Edad Media", (Bogotá, Universidad Santo Tomás, 1986.

Tree species classification using within crown localization of waveform LiDAR attributes

Science.gov (United States)

Blomley, Rosmarie; Hovi, Aarne; Weinmann, Martin; Hinz, Stefan; Korpela, Ilkka; Jutzi, Boris

2017-11-01

Since forest planning is increasingly taking an ecological, diversity-oriented perspective into account, remote sensing technologies are becoming ever more important in assessing existing resources with reduced manual effort. While the light detection and ranging (LiDAR) technology provides a good basis for predictions of tree height and biomass, tree species identification based on this type of data is particularly challenging in structurally heterogeneous forests. In this paper, we analyse existing approaches with respect to the geometrical scale of feature extraction (whole tree, within crown partitions or within laser footprint) and conclude that currently features are always extracted separately from the different scales. Since multi-scale approaches however have proven successful in other applications, we aim to utilize the within-tree-crown distribution of within-footprint signal characteristics as additional features. To do so, a spin image algorithm, originally devised for the extraction of 3D surface features in object recognition, is adapted. This algorithm relies on spinning an image plane around a defined axis, e.g. the tree stem, collecting the number of LiDAR returns or mean values of returns attributes per pixel as respective values. Based on this representation, spin image features are extracted that comprise only those components of highest variability among a given set of library trees. The relative performance and the combined improvement of these spin image features with respect to non-spatial statistical metrics of the waveform (WF) attributes are evaluated for the tree species classification of Scots pine (Pinus sylvestris L.), Norway spruce (Picea abies (L.) Karst.) and Silver/Downy birch (Betula pendula Roth/Betula pubescens Ehrh.) in a boreal forest environment. This evaluation is performed for two WF LiDAR datasets that differ in footprint size, pulse density at ground, laser wavelength and pulse width. Furthermore, we evaluate the

Timely binding of IHF and Fis to DARS2 regulates ATP–DnaA production and replication initiation

Science.gov (United States)

Kasho, Kazutoshi; Fujimitsu, Kazuyuki; Matoba, Toshihiro; Oshima, Taku; Katayama, Tsutomu

2014-01-01

In Escherichia coli, the ATP-bound form of DnaA (ATP–DnaA) promotes replication initiation. During replication, the bound ATP is hydrolyzed to ADP to yield the ADP-bound form (ADP–DnaA), which is inactive for initiation. The chromosomal site DARS2 facilitates the regeneration of ATP–DnaA by catalyzing nucleotide exchange between free ATP and ADP bound to DnaA. However, the regulatory mechanisms governing this exchange reaction are unclear. Here, using in vitro reconstituted experiments, we show that two nucleoid-associated proteins, IHF and Fis, bind site-specifically to DARS2 to activate coordinately the exchange reaction. The regenerated ATP–DnaA was fully active in replication initiation and underwent DnaA–ATP hydrolysis. ADP–DnaA formed heteromultimeric complexes with IHF and Fis on DARS2, and underwent nucleotide dissociation more efficiently than ATP–DnaA. Consistently, mutant analyses demonstrated that specific binding of IHF and Fis to DARS2 stimulates the formation of ATP–DnaA production, thereby promoting timely initiation. Moreover, we show that IHF–DARS2 binding is temporally regulated during the cell cycle, whereas Fis only binds to DARS2 in exponentially growing cells. These results elucidate the regulation of ATP–DnaA and replication initiation in coordination with the cell cycle and growth phase. PMID:25378325

Timely binding of IHF and Fis to DARS2 regulates ATP-DnaA production and replication initiation.

Science.gov (United States)

Kasho, Kazutoshi; Fujimitsu, Kazuyuki; Matoba, Toshihiro; Oshima, Taku; Katayama, Tsutomu

2014-12-01

In Escherichia coli, the ATP-bound form of DnaA (ATP-DnaA) promotes replication initiation. During replication, the bound ATP is hydrolyzed to ADP to yield the ADP-bound form (ADP-DnaA), which is inactive for initiation. The chromosomal site DARS2 facilitates the regeneration of ATP-DnaA by catalyzing nucleotide exchange between free ATP and ADP bound to DnaA. However, the regulatory mechanisms governing this exchange reaction are unclear. Here, using in vitro reconstituted experiments, we show that two nucleoid-associated proteins, IHF and Fis, bind site-specifically to DARS2 to activate coordinately the exchange reaction. The regenerated ATP-DnaA was fully active in replication initiation and underwent DnaA-ATP hydrolysis. ADP-DnaA formed heteromultimeric complexes with IHF and Fis on DARS2, and underwent nucleotide dissociation more efficiently than ATP-DnaA. Consistently, mutant analyses demonstrated that specific binding of IHF and Fis to DARS2 stimulates the formation of ATP-DnaA production, thereby promoting timely initiation. Moreover, we show that IHF-DARS2 binding is temporally regulated during the cell cycle, whereas Fis only binds to DARS2 in exponentially growing cells. These results elucidate the regulation of ATP-DnaA and replication initiation in coordination with the cell cycle and growth phase. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Real-time surveillance system for marine environment based on HLIF LiDAR

Science.gov (United States)

Babichenko, Sergey; Sobolev, Innokenti; Aleksejev, Valeri; Sõro, Oliver

2017-10-01

The operational monitoring of the risk areas of marine environment requires cost-effective solutions. One of the options is the use of sensor networks based on fixed installations and moving platforms (coastal boats, supply-, cargo-, and passenger vessels). Such network allows to gather environmental data in time and space with direct links to operational activities in the controlled area for further environmental risk assessment. Among many remote sensing techniques the LiDAR (Light Detection And Ranging) based on Light Induced Fluorescence (LIF) is the tool of direct assessment of water quality variations caused by chemical pollution, colored dissolved organic matter, and phytoplankton composition. The Hyperspectral LIF (HLIF) LiDAR acquires comprehensive LIF spectra and analyses them by spectral pattern recognition technique to detect and classify the substances in water remotely. Combined use of HLIF LiDARs with Real-Time Data Management System (RTDMS) provides the economically effective solution for the regular monitoring in the controlled area. OCEAN VISUALS in cooperation with LDI INNOVATION has developed Oil in Water Locator (OWL™) with RTDMS (OWL MAP™) based on HLIF LiDAR technique. This is a novel technical solution for monitoring of marine environment providing continuous unattended operations. OWL™ has been extensively tested on board of various vessels in the North Sea, Norwegian Sea, Barents Sea, Baltic Sea and Caribbean Sea. This paper describes the technology features, the results of its operational use in 2014-2017, and outlook for the technology development.

Carbazole-based copolymers via direct arylation polymerization (DArP) for Suzuki-convergent polymer solar cell performance

DEFF Research Database (Denmark)

Gobalasingham, Nemal S.; Ekiz, Seyma; Pankow, Robert M.

2017-01-01

Although direct arylation polymerization (DArP) has recently emerged as an alternative to traditional cross-coupling methods like Suzuki polymerization, the evaluation of DArP polymers in practical applications like polymer solar cells (PSCs) is limited. Because even the presence of minute...

Congenital Cerebellar Mixed Germ Cell Tumor Presenting with Hemorrhage in a Newborn

International Nuclear Information System (INIS)

Kim, Sung Mok; Kim, Ji Hye; Yoo, So Young; Park, Won Soon; Jang, Yun Sil; Shin, Hyung Jin; Suh, Yeon Lim

2008-01-01

We report here on a neonate with congenital cerebellar mixed germ cell tumor, and this initially presented as cerebellar hemorrhage. Postnatal cranial ultrasonography revealed an echogenic cerebellar mass that exhibited the signal characteristics of hemorrhage rather than tumor on MR images. The short-term follow-up images also suggested a resolving cerebellar hemorrhage. One month later, the neonate developed vomiting. A second set of MR images demonstrated an enlarged mass that exhibited changed signal intensity at the same site, which suggested a neoplasm. Histological examination after the surgical resection revealed a mixed germ cell tumor

Hermes Tovar Pinzón. Los fantasmas de la memoria. Poder e inhibición en la historia de América Latina. Bogotá: Universidad de los Andes, 2009. 392 páginas

Directory of Open Access Journals (Sweden)

Renán Vega Cantor

2015-07-01

Full Text Available En 1976, Darío Jaramillo Agudelo acuñó el apelativo de nueva historia en un libro que compiló, que se convirtió en algo así como el manifiesto inaugural de lo que luego se llamaría, de manera cuasi oficial, La nueva historia de Colombia, y cuya producción más reconocida se plasmó en el libro mencionado, junto con el Manual de historia de Colombia en tres volúmenes, editado por Colcultura, y en Colombia hoy, un pequeño volumen publicado por la Editorial Siglo XXI, en 1978. En estos libros aparecen escritos de académicos que emergían o se autoproclamaban, en ese momento, como lo más novedoso e innovador de una investigación histórica que se pretendía independiente del bipartidismo e, incluso, crítica del capitalismo salvaje, a la colombiana. Los nombres más representativos, tal como aparecen en los libros mencionados, eran Jorge Orlando Melo, Álvaro Tirado Mejia, Salomón Kalmanovitz, Jesús Antonio Bejarano, Miguel Urrutia, Germán Colmenares y su mentor intelectual, Jaime Jaramillo Uribe. El nombre de Hermes Tovar Pinzón, un historiador de la misma generación, cuya producción intelectual ya era notable desde finales de la década de 1960, solo apareció en el libro editado por Darío Jaramillo, con un pequeño artículo sobre el “Modo de producción precolombino”.

On Feature Extraction from Large Scale Linear LiDAR Data

Science.gov (United States)

Acharjee, Partha Pratim

Airborne light detection and ranging (LiDAR) can generate co-registered elevation and intensity map over large terrain. The co-registered 3D map and intensity information can be used efficiently for different feature extraction application. In this dissertation, we developed two algorithms for feature extraction, and usages of features for practical applications. One of the developed algorithms can map still and flowing waterbody features, and another one can extract building feature and estimate solar potential on rooftops and facades. Remote sensing capabilities, distinguishing characteristics of laser returns from water surface and specific data collection procedures provide LiDAR data an edge in this application domain. Furthermore, water surface mapping solutions must work on extremely large datasets, from a thousand square miles, to hundreds of thousands of square miles. National and state-wide map generation/upgradation and hydro-flattening of LiDAR data for many other applications are two leading needs of water surface mapping. These call for as much automation as possible. Researchers have developed many semi-automated algorithms using multiple semi-automated tools and human interventions. This reported work describes a consolidated algorithm and toolbox developed for large scale, automated water surface mapping. Geometric features such as flatness of water surface, higher elevation change in water-land interface and, optical properties such as dropouts caused by specular reflection, bimodal intensity distributions were some of the linear LiDAR features exploited for water surface mapping. Large-scale data handling capabilities are incorporated by automated and intelligent windowing, by resolving boundary issues and integrating all results to a single output. This whole algorithm is developed as an ArcGIS toolbox using Python libraries. Testing and validation are performed on a large datasets to determine the effectiveness of the toolbox and results are

Comparison between the effect of γ-irradiation and roasting on the profile and antioxidant activity of wheat germ lipids

International Nuclear Information System (INIS)

Ramadan, M.F.; El-Said Showky, H.; Abd el Rahman, M.S.

2008-01-01

In order to utilize wheat germ, a nutrient-dense byproduct of the wheat milling industry, in various food products, different treatments are used to investigate and stabilize its influence on lipid characteristics. However, there are no reports on the effect of gamma-irradiation on the lipid profile of wheat germ. In this study, the impact of gamma-irradiation (at radiation doses 1/4, 1/2 and 1 kGy) and roasting at (160 deg C for 20 min) on the lipid constituents of wheat germ was examined. Both thermal and irradiation treatments did not have a significant effect on the total lipid recovery or the fatty acid composition of wheat germ lipids. The fatty acid profile was found to be made up of linoleic followed by oleic and palmitic as the major fatty acids. An increase in the content of free fatty acids characterized the lipid profile of the irradiated wheat germ samples. Antiradical properties of lipids from roasted and irradiated samples were analyzed using the bleaching of the stable 1,1-diphenyl-2- picrylhydrazyl radical (DPPH). Lipids from irradiated samples exhibited relatively stronger radical scavenging potential than lipids from roasted wheat germ. It has been concluded that gamma-irradiation could be applied for wheat germ preservation, where it might be limited to a dose of 1/4 kGy in the processing

Identification of four Drosophila allatostatins as the cognate ligands for the Drosophila orphan receptor DAR-2

DEFF Research Database (Denmark)

Lenz, C; Williamson, M; Hansen, G N

2001-01-01

The allatostatins are generally inhibitory insect neuropeptides. The Drosophila orphan receptor DAR-2 is a G-protein-coupled receptor, having 47% amino acid residue identity with another Drosophila receptor, DAR-1 (which is also called dros. GPCR, or DGR) that was previously shown...... to be the receptor for an intrinsic Drosophila A-type (cockroach-type) allatostatin. Here, we have permanently expressed DAR-2 in CHO cells and found that it is the cognate receptor for four Drosophila A-type allatostatins, the drostatins-A1 to -A4. Of all the drostatins, drostatin-A4 (Thr...... weakly in the brain. The Drosophila larval gut also contains about 20-30 endocrine cells, expressing the gene for the drostatins-A1 to -A4. We suggest, therefore, that DAR-2 mediates an allatostatin (drostatin)-induced inhibition of gut motility. This is the first report on the permanent and functional...

Wheat germ oil enrichment in broiler feed with α-lipoic acid to enhance the antioxidant potential and lipid stability of meat

Science.gov (United States)

2013-01-01

Background Lipid peroxidation is the cause of declining the meat quality. Natural antioxidants plays a vital role in enhancing the stability and quality of meat. The supplementation of natural antioxidants in feed decreases lipid peroxidation and improves the stability of meat. Methods The present research was conducted to determine the effect of α-lipoic acid, α-tocopherol and wheat germ oil on the status of antioxidants, quality and lipid stability of broiler meat. One day old male broilers were fed with different feeds containing antioxidants i.e. natural (wheat germ oil) and synthetic α-tocopherol and α-lipoic acid during the two experimental years. Results The feed treatments have significant variation on the body weight and feed conversion ratio (FCR) while having no influence on the feed intake. The broilers fed on wheat germ oil (natural α-tocopherol) gained maximum body weight (2451.97 g & 2466.07 g) in the experimental years 2010–11 & 2011–12, respectively. The higher total phenolic contents were found in the broilers fed on wheat germ oil plus α-lipoic acid in breast (162.73±4.8 mg Gallic acid equivalent/100 g & 162.18±4.5 mg Gallic acid equivalent/100 g) and leg (149.67±3.3 mg Gallic acid equivalent/100 g & 146.07±3.2 mg Gallic acid equivalent/100 g) meat during both experimental years. Similar trend was observed for the 2,2-diphenyl-1-picrylhydrazyl (DPPH) and ferric reducing antioxidant power assay (FRAP). The production of malondialdehydes in the breast and leg meat increased with progressive increase in the time period. The deposition of α-tocopherol (AT) and α-lipoic acid (ALA) contents were found to be higher in the broilers fed on wheat germ oil plus α-lipoic acid in breast and leg meat during the both experimental years. Conclusion In conclusion, the combination of wheat germ oil and α-lipoic acid has more beneficial for stability and the quality of the broiler meat and more work should be needed in future for the bio

Liquid waste management: The case of Bahir Dar, Ethiopia

African Journals Online (AJOL)

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liquid waste management practices of the community; to assess the .... Logistic regression was performed to assess the impact of a number of factors on the .... the ever-growing Bahir Dar Town with modern buildings using flush toilets will ...

MRI Findings of Suprasellar Germ Cell Tumors in Two Dogs.

Science.gov (United States)

Cook, Laurie; Tensley, Michelle; Drost, Wm Tod; Koivisto, Christopher; Oglesbee, Michael

A 4 yr old border collie presenting for mydriasis and decreased mentation and a 7 yr old Boston terrier presenting for obtundation, head tilt, and paraparesis were both evaluated using MRI. Findings in both included mass lesions of the thalamus and brainstem that were hypo- to isointense on T1-weighted images and hyperintense on T2-weighted images with regions of hypointensity, and robust contrast enhancement and displacement of adjacent structures. Postmortem histopathology findings, tumor location, and a mixed pattern of epithelial cell differentiation were consistent with germ cell tumor in both cases. Germ cell tumor of the suprasellar region is an infrequently reported neoplasm of dogs and imaging findings in this species have not been well described in the prior literature.

Coastal and tidal landform detection from high resolution topobathymetric LiDAR data

DEFF Research Database (Denmark)

Andersen, Mikkel S.; Al-Hamdani, Zyad K.; Steinbacher, Frank

-resolution mapping of these land-water transition zones. We have carried out topobathymetric LiDAR surveys in the Knudedyb tidal inlet system, a coastal environment in the Danish Wadden Sea which is part of the Wadden Sea National Park and UNESCO World Heritage. Detailed digital elevation models (DEMs) with a grid...... to tides. Furthermore, we demonstrate the potential of morphometric analysis on high-resolution topobathymetric LiDAR data for automatic identification, characterisation and classification of different landforms present in coastal land-water transition zones. Acknowledgements This work was funded...

CT and MRI of germ-cell tumors with metastasis or multi-located tumors

International Nuclear Information System (INIS)

Miyagami, Mitsusuke; Tazoe, Makoto; Tsubokawa, Takashi

1989-01-01

Twenty-seven cases of germ-cell tumors were examined with a CT scan in our clinic. In the 11 cases of metastasis or multi-localized tumors, the CT findings were studied in connection with the MRI findings. There were 6 cases of germ-cell tumors which had broad infiltrating tumors with multiple lesions on first admission. Their tumor sites were different from that in cases of malignant glioma, being frequently localized in the pineal and/or the suprasellar region, on the wall of the third and/or lateral ventricle, and in the region of the basal ganglia. Five of the cases of germ-cell tumors had metastasis with various patterns connected to a remote area - that is, to spinal cords, to the ventricular wall and basal cistern of the brain stem by CSF dissemination, to a lung by hematogeneous metastasis, and to the peritoneal wall or organs by a V-P shunt. The CT findings of germ-cell tumors were correlated mainly with the results of the histological diagnosis; they were found not to differ with the tumor site. The germinoma in the suprasellar region had less calcification than in the pineal region. Cysts, calcification, and an enlargement of the lateral ventricle on the tumor side were frequently seen in the germinoma of the basal ganglia. On the MRI of 5 cases of germinoma, the T 1 -weighted image revealed a slightly low or iso signal intensity, while the T 2 -weighted image showed a high signal intensity. In the case of multiple tumor lesions, some cases demonstrated different CT findings and radiosensitivities for each tumor. The possibility of a multicentric origin for the tumors is thus suggested in some cases of germ-cell tumors. (author)

Development and validation of the Dimensional Anhedonia Rating Scale (DARS) in a community sample and individuals with major depression.

Science.gov (United States)

Rizvi, Sakina J; Quilty, Lena C; Sproule, Beth A; Cyriac, Anna; Michael Bagby, R; Kennedy, Sidney H

2015-09-30

Anhedonia, a core symptom of Major Depressive Disorder (MDD), is predictive of antidepressant non-response. In contrast to the definition of anhedonia as a "loss of pleasure", neuropsychological studies provide evidence for multiple facets of hedonic function. The aim of the current study was to develop and validate the Dimensional Anhedonia Rating Scale (DARS), a dynamic scale that measures desire, motivation, effort and consummatory pleasure across hedonic domains. Following item selection procedures and reliability testing using data from community participants (N=229) (Study 1), the 17-item scale was validated in an online study with community participants (N=150) (Study 2). The DARS was also validated in unipolar or bipolar depressed patients (n=52) and controls (n=50) (Study 3). Principal components analysis of the 17-item DARS revealed a 4-component structure mapping onto the domains of anhedonia: hobbies, food/drink, social activities, and sensory experience. Reliability of the DARS subscales was high across studies (Cronbach's α=0.75-0.92). The DARS also demonstrated good convergent and divergent validity. Hierarchical regression analysis revealed the DARS showed additional utility over the Snaith-Hamilton Pleasure Scale (SHAPS) in predicting reward function and distinguishing MDD subgroups. These studies provide support for the reliability and validity of the DARS. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Synergy of VSWIR and LiDAR for Ecosystem Structure, Biomass, and Canopy Diversity

Science.gov (United States)

Cook, Bruce D.; Asner, Gregory P.

2010-01-01

This slide presentation reviews the use of Visible ShortWave InfraRed (VSWIR) Imaging Spectrometer and LiDAR to study ecosystem structure, biomass and canopy diversity. It is shown that the biophysical data from LiDAR and biochemical information from hyperspectral remote sensing provides complementary data for: (1) describing spatial patterns of vegetation and biodiversity, (2) characterizing relationships between ecosystem form and function, and (3) detecting natural and human induced change that affects the biogeochemical cycles.

Proliferation of endogenous retroviruses in the early stages of a host germ line invasion.

Science.gov (United States)

Ishida, Yasuko; Zhao, Kai; Greenwood, Alex D; Roca, Alfred L

2015-01-01

Endogenous retroviruses (ERVs) comprise 8% of the human genome and are common in all vertebrate genomes. The only retrovirus known to be currently transitioning from exogenous to endogenous form is the koala retrovirus (KoRV), making koalas (Phascolarctos cinereus) ideal for examining the early stages of retroviral endogenization. To distinguish endogenous from exogenous KoRV proviruses, we isolated koala genomic regions flanking KoRV integration sites. In three wild southern Australian koalas, there were fewer KoRV loci than in three captive Queensland koalas, consistent with reports that southern Australian koalas carry fewer KoRVs. Of 39 distinct KoRV proviral loci examined in a sire-dam-progeny triad, all proved to be vertically transmitted and endogenous; none was exogenous. Of the 39 endogenous KoRVs (enKoRVs), only one was present in the genomes of both the sire and the dam, suggesting that, at this early stage in the retroviral invasion of a host germ line, very large numbers of ERVs have proliferated at very low frequencies in the koala population. Sequence divergence between the 5'- and 3'-long terminal repeats (LTRs) of a provirus can be used as a molecular clock. Within each of ten enKoRVs, the 5'-LTR sequence was identical to the 3'-LTR sequence, suggesting a maximum age for enKoRV invasion of the koala germ line of approximately 22,200-49,900 years ago, although a much younger age is possible. Across the ten proviruses, seven LTR haplotypes were detected, indicating that at least seven different retroviral sequences had entered the koala germ line. © The Author 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

HuB (elavl2 mRNA is restricted to the germ cells by post-transcriptional mechanisms including stabilisation of the message by DAZL.

Directory of Open Access Journals (Sweden)

Sophie E Wiszniak

Full Text Available The ability of germ cells to carry out a gene regulatory program distinct from the surrounding somatic tissue, and their capacity to specify an entire new organism has made them a focus of many studies that seek to understand how specific regulatory mechanisms, particularly post-transcriptional mechanisms, contribute to cell fate. In zebrafish, germ cells are specified through the inheritance of cytoplasmic determinants, termed the germ plasm, which contains a number of maternal mRNAs and proteins. Investigation of several of these messages has revealed that the restricted localisation of these mRNAs to the germ plasm and subsequent germ cells is due to cis-acting sequence elements present in their 3'UTRs. Here we show that a member of the Hu family of RNA-binding proteins, HuB, is maternally provided in the zebrafish embryo and exhibits germ cell specific expression during embryogenesis. Restriction of HuB mRNA to the germ cells is dependent on a number of sequence elements in its 3'UTR, which act to degrade the mRNA in the soma and stabilise it in the germ cells. In addition, we show that the germ cell specific RNA-binding protein DAZL is able to promote HuB mRNA stability and translation in germ cells, and further demonstrate that these activities require a 30 nucleotide element in the 3'UTR. Our study suggests that DAZL specifically binds the HuB 3'UTR and protects the message from degradation and/or enhances HuB translation, leading to the germ cell specific expression of HuB protein.

Using satellite and airborne LiDAR to model woodpecker habitat occupancy at the landscape scale

Science.gov (United States)

Lee A. Vierling; Kerri T. Vierling; Patrick Adam; Andrew T. Hudak

2013-01-01

Incorporating vertical vegetation structure into models of animal distributions can improve understanding of the patterns and processes governing habitat selection. LiDAR can provide such structural information, but these data are typically collected via aircraft and thus are limited in spatial extent. Our objective was to explore the utility of satellite-based LiDAR...

Handling Low-Density LiDAR Data: Calculating the Heights of Civil Constructions and the Accuracy Expected

Directory of Open Access Journals (Sweden)

Rubén Martínez Marín

2013-01-01

Full Text Available During the last years, in many developed countries, administrations and private companies have devoted considerable amounts of money to obtain mapping data using airborne LiDAR. For many civil activities, we can take advantage of it, since those data are available with no cost. Some important questions arise: Are those data good enough to be used for determining the heights of the civil constructions with the accuracy we need in some civil work? What accuracy can we expect when using low-density LiDAR data (0.5 pts/m2? In order to answer those questions, we have developed a specific methodology based on establishing a set of control points on the top of several constructions and calculating the elevation of each one using postprocessing GPS. Those results have been taken as correct values and the comparison between those values and the elevations obtained, assigning values to the control points by the interpolation of the LiDAR dataset, has been carried out. This paper shows the results obtained using low-density airborne LiDAR data and the accuracy obtained. Results have shown that LiDAR can be accurate enough (10–25 cm to determine the height of civil constructions and apply those data in many civil engineering activities.

LiDAR and Orthophoto Synergy to optimize Object-Based Landscape Change: Analysis of an Active Landslide

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Martijn Kamps

2017-08-01

Full Text Available Active landslides have three major effects on landscapes: (1 land cover change, (2 topographical change, and (3 above ground biomass change. Data derived from multi-temporal Light Detection and Ranging technology (LiDAR are used in combination with multi-temporal orthophotos to quantify these changes between 2006 and 2012, caused by an active deep-seated landslide near the village of Doren in Austria. Land-cover is classified by applying membership-based classification and contextual improvements based on the synergy of orthophotos and LiDAR-based elevation data. Topographical change is calculated by differencing of LiDAR derived digital terrain models. The above ground biomass is quantified by applying a local-maximum algorithm for tree top detection, in combination with allometric equations. The land cover classification accuracies were improved from 65% (using only LiDAR and 76% (using only orthophotos to 90% (using data synergy for 2006. A similar increase from respectively 64% and 75% to 91% was established for 2012. The increased accuracies demonstrate the effectiveness of using data synergy of LiDAR and orthophotos using object-based image analysis to quantify landscape changes, caused by an active landslide. The method has great potential to be transferred to larger areas for use in landscape change analyses.

Temporally and spatially dynamic germ cell niches in Botryllus schlosseri revealed by expression of a TGF-beta family ligand and vasa

Directory of Open Access Journals (Sweden)

Adam D. Langenbacher

2016-04-01

Full Text Available Abstract Background Germ cells are specified during early development and are responsible for generating gametes in the adult. After germ cells are specified, they typically migrate to a particular niche in the organism where they reside for the remainder of its lifetime. For some model organisms, the specification and migration of germ cells have been extensively studied, but how these events occur in animals that reproduce both sexually and asexually is not well understood. Results We have identified a novel TGF-β family member in Botryllus schlosseri, tgfβ-f, and found that it is expressed by follicle cell progenitors and the differentiated follicle and support cells surrounding the maturing gametes. Using the expression of tgfβ-f and the germ cell marker vasa, we have found that nearly all germ cells in Botryllus are associated with tgfβ-f-expressing follicle progenitors in clusters consisting solely of those two cell types. These clusters were mostly small, consisting of ten or fewer cells, and generally contained between a 2:1 and 1:1 ratio of follicle progenitors to germ cells. Clusters of germ and follicle progenitor cells were primarily localized to niches in the primary and secondary buds, but could also be found in other locations including the vasculature. We analyzed the location of germ cell clusters throughout the asexual life cycle of Botryllus and found that at the stage when germ cells are first detected in the secondary bud niche, a dramatic change in the size and location of germ/follicle cell clusters also occurred. Conclusions Our findings suggest that germ/follicle cell clusters have predictable migratory patterns during the weekly asexual developmental cycle in Botryllus. An increased number of small clusters and the presence of clusters in the vasculature coinciding with the appearance of clusters in the secondary bud suggest that fragmentation of clusters and the migration of smaller clusters through the vasculature

Germ plasm localisation of the HELICc of Vasa in Drosophila: analysis of domain sufficiency and amino acids critical for localisation

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Wang, Szu-Chieh; Hsu, Hao-Jen; Lin, Gee-Way; Wang, Ting-Fang; Chang, Chun-Che; Lin, Ming-Der

2015-09-01

Formation of the germ plasm drives germline specification in Drosophila and some other insects such as aphids. Identification of the DEAD-box protein Vasa (Vas) as a conserved germline marker in flies and aphids suggests that they share common components for assembling the germ plasm. However, to which extent the assembly order is conserved and the correlation between functions and sequences of Vas remain unclear. Ectopic expression of the pea aphid Vas (ApVas1) in Drosophila did not drive its localisation to the germ plasm, but ApVas1 with a replaced C-terminal domain (HELICc) of Drosophila Vas (DmVas) became germ-plasm restricted. We found that HELICc itself, through the interaction with Oskar (Osk), was sufficient for germ-plasm localisation. Similarly, HELICc of the grasshopper Vas could be recruited to the germ plasm in Drosophila. Nonetheless, germ-plasm localisation was not seen in the Drosophila oocytes expressing HELICcs of Vas orthologues from aphids, crickets, and mice. We further identified that glutamine (Gln) 527 within HELICc of DmVas was critical for localisation, and its corresponding residue could also be detected in grasshopper Vas yet missing in the other three species. This suggests that Gln527 is a direct target of Osk or critical to the maintenance of HELICc conformation.

Trends in Automatic Individual Tree Crown Detection and Delineation—Evolution of LiDAR Data

Directory of Open Access Journals (Sweden)

Zhen Zhen

2016-04-01

Full Text Available Automated individual tree crown detection and delineation (ITCD using remotely sensed data plays an increasingly significant role in efficiently, accurately, and completely monitoring forests. This paper reviews trends in ITCD research from 1990–2015 from several perspectives—data/forest type, method applied, accuracy assessment and research objective—with a focus on studies using LiDAR data. This review shows that active sources are becoming more prominent in ITCD studies. Studies using active data—LiDAR in particular—accounted for 80% of the total increase over the entire time period, those using passive data or fusion of passive and active data comprised relatively small proportions of the total increase (8% and 12%, respectively. Additionally, ITCD research has moved from incremental adaptations of algorithms developed for passive data sources to innovative approaches that take advantage of the novel characteristics of active datasets like LiDAR. These improvements make it possible to explore more complex forest conditions (e.g., closed hardwood forests, suburban/urban forests rather than a single forest type although most published ITCD studies still focused on closed softwood (41% or mixed forest (22%. Approximately one-third of studies applied individual tree level (30% assessment, with only a quarter reporting more comprehensive multi-level assessment (23%. Almost one-third of studies (32% that concentrated on forest parameter estimation based on ITCD results had no ITCD-specific evaluation. Comparison of methods continues to be complicated by both choice of reference data and assessment metric; it is imperative to establish a standardized two-level assessment framework to evaluate and compare ITCD algorithms in order to provide specific recommendations about suitable applications of particular algorithms. However, the evolution of active remotely sensed data and novel platforms implies that automated ITCD will continue to be a

Multi-temporal LiDAR and Landsat quantification of fire-induced changes to forest structure

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McCarley, T. Ryan; Kolden, Crystal A.; Vaillant, Nicole M.; Hudak, Andrew T.; Smith, Alistair M.S.; Wing, Brian M.; Kellogg, Bryce; Kreitler, Jason R.

2017-01-01

Measuring post-fire effects at landscape scales is critical to an ecological understanding of wildfire effects. Predominantly this is accomplished with either multi-spectral remote sensing data or through ground-based field sampling plots. While these methods are important, field data is usually limited to opportunistic post-fire observations, and spectral data often lacks validation with specific variables of change. Additional uncertainty remains regarding how best to account for environmental variables influencing fire effects (e.g., weather) for which observational data cannot easily be acquired, and whether pre-fire agents of change such as bark beetle and timber harvest impact model accuracy. This study quantifies wildfire effects by correlating changes in forest structure derived from multi-temporal Light Detection and Ranging (LiDAR) acquisitions to multi-temporal spectral changes captured by the Landsat Thematic Mapper and Operational Land Imager for the 2012 Pole Creek Fire in central Oregon. Spatial regression modeling was assessed as a methodology to account for spatial autocorrelation, and model consistency was quantified across areas impacted by pre-fire mountain pine beetle and timber harvest. The strongest relationship (pseudo-r2 = 0.86, p LiDAR-derived estimate of canopy cover change. Relationships between percentage of LiDAR returns in forest strata and spectral indices generally increased in strength with strata height. Structural measurements made closer to the ground were not well correlated. The spatial regression approach improved all relationships, demonstrating its utility, but model performance declined across pre-fire agents of change, suggesting that such studies should stratify by pre-fire forest condition. This study establishes that spectral indices such as d74 and dNBR are most sensitive to wildfire-caused structural changes such as reduction in canopy cover and perform best when that structure has not been reduced pre-fire.

Development of DArT-based PCR markers for selecting drought-tolerant spring barley.

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