WorldWideScience

Sample records for genotype convey information

  1. When Information Conveys Meaning

    Directory of Open Access Journals (Sweden)

    Anthony Reading

    2012-11-01

    Full Text Available While some information is clearly meaningful and some clearly is not, no one has been able to identify exactly what the difference is. The major obstacle has been the way information and meaning are conceptualized: the one in the physical realm of tangible, objective entities and the other in the mental world of intangible, subjective ones. This paper introduces an approach that incorporates both of them within a unified framework by defining them in terms of what they do, rather than what they are. Meaningful information is thus conceptualized here as patterns of matter and energy that have a tangible effect on the entities that detect them, either by changing their function, structure or behavior, while patterns of matter and energy that have no such effects are considered meaningless. The way that meaningful information can act as a causal agent in bio-behavioral systems enables us to move beyond dualistic concepts of ourselves as comprised of a material body that obeys the laws of physics and a non-material essence that is too elusive to study [1].

  2. Does microblogging convey firm-specific information? Evidence from China

    Science.gov (United States)

    Shen, Dehua; Li, Xiao; Xue, Mei; Zhang, Wei

    2017-09-01

    This paper investigates the impact of opening microblogging account in Sina Weibo on the diffusion of firm-specific information in Chinese stock market. With the unique sample of firms opening their official accounts, the empirical results show that this newly emerged information diffusion channel, i.e., Sina Weibo, plays an important role in conveying firm-specific information to the market. Generally speaking, these empirical findings have practical implications to securities regulators who have interest in monitoring the diffused information via social media.

  3. Reducing Computational Overhead of Network Coding with Intrinsic Information Conveying

    DEFF Research Database (Denmark)

    Heide, Janus; Zhang, Qi; Pedersen, Morten V.;

    is RLNC (Random Linear Network Coding) and the goal is to reduce the amount of coding operations both at the coding and decoding node, and at the same time remove the need for dedicated signaling messages. In a traditional RLNC system, coding operation takes up significant computational resources and adds......This paper investigated the possibility of intrinsic information conveying in network coding systems. The information is embedded into the coding vector by constructing the vector based on a set of predefined rules. This information can subsequently be retrieved by any receiver. The starting point...

  4. Reducing Computational Overhead of Network Coding with Intrinsic Information Conveying

    DEFF Research Database (Denmark)

    Heide, Janus; Zhang, Qi; Pedersen, Morten V.

    This paper investigated the possibility of intrinsic information conveying in network coding systems. The information is embedded into the coding vector by constructing the vector based on a set of predefined rules. This information can subsequently be retrieved by any receiver. The starting point...... to the overall energy consumption, which is particular problematic for mobile battery-driven devices. In RLNC coding is performed over a FF (Finite Field). We propose to divide this field into sub fields, and let each sub field signify some information or state. In order to embed the information correctly...... the coding operations must be performed in a particular way, which we introduce. Finally we evaluate the suggested system and find that the amount of coding can be significantly reduced both at nodes that recode and decode....

  5. 76 FR 44402 - Proposed Information Collection (Application for Automobile or Other Conveyance and Adaptive...

    Science.gov (United States)

    2011-07-25

    ... AFFAIRS Proposed Information Collection (Application for Automobile or Other Conveyance and Adaptive...' eligibility for automobile adaptation equipment or other conveyance allowance. DATES: Written comments and... techniques or the use of other forms of information technology. Title: Application for Automobile or...

  6. 76 FR 61779 - Agency Information Collection (Application for Automobile or Other Conveyance and Adaptive...

    Science.gov (United States)

    2011-10-05

    ... AFFAIRS Agency Information Collection (Application for Automobile or Other Conveyance and Adaptive... refer to ``OMB Control No. 2900-0067.'' SUPPLEMENTARY INFORMATION: Title: Application for Automobile or..., servicepersons and their survivors complete VA Form 21-4502 to apply for automobile or other conveyance...

  7. The Sound of Motion in Spoken Language: Visual Information Conveyed by Acoustic Properties of Speech

    Science.gov (United States)

    Shintel, Hadas; Nusbaum, Howard C.

    2007-01-01

    Language is generally viewed as conveying information through symbols whose form is arbitrarily related to their meaning. This arbitrary relation is often assumed to also characterize the mental representations underlying language comprehension. We explore the idea that visuo-spatial information can be analogically conveyed through acoustic…

  8. Dopamine Transporter Genotype Conveys Familial Risk of Attention-Deficit/Hyperactivity Disorder through Striatal Activation

    Science.gov (United States)

    Durston, Sarah; Fossella, John A.; Mulder, Martijn J.; Casey B. J.; Ziermans, Tim B.; Vessaz, M. Nathalie; Van Engeland, Herman

    2008-01-01

    The study examines the effect of the dopamine transporter (DAT1) genotype in attention-deficit/hyperactivity disorder (ADHD). The results confirm that DAT1 translates the genetic risk of ADHD through striatal activation.

  9. Dopamine Transporter Genotype Conveys Familial Risk of Attention-Deficit/Hyperactivity Disorder through Striatal Activation

    Science.gov (United States)

    Durston, Sarah; Fossella, John A.; Mulder, Martijn J.; Casey B. J.; Ziermans, Tim B.; Vessaz, M. Nathalie; Van Engeland, Herman

    2008-01-01

    The study examines the effect of the dopamine transporter (DAT1) genotype in attention-deficit/hyperactivity disorder (ADHD). The results confirm that DAT1 translates the genetic risk of ADHD through striatal activation.

  10. Exploring the Process of Conveying Information about Side Effects: A Qualitative Study among Pharmacists

    Directory of Open Access Journals (Sweden)

    Therése Kairuz

    2013-12-01

    Full Text Available This study explored how a sample of Australian pharmacists would convey information about the side effects of a medicine, if they were to counsel a patient. A qualitative method was selected and written responses to a case-based scenario were analysed using inductive thematic analysis. The grounded theory approach elicited a fluid and dynamic model for side effect counselling. The study identified strategies for counselling, such as encouraging adherence through emphasising the benefits of the medication, referral to the prescriber, and providing empathy and reassurance to ease anxiety and address concerns. Pharmacists acknowledged the potential for risk, although only a minority used numerical descriptors. The final themes or outcomes were that pharmacists aim to allay fears, minimise harm and promote medication use when counselling about side effects. Professional empathy, the acknowledgment of patient concerns, and the importance of providing tailored information to promote medication adherence, emerged as features of the quality use of medicines. This study contributes to existing literature by identifying the role of allaying patients’ fears when conveying side effect information. It also describes a process to convey tailored information. Implications for practice include the importance of effective use of communication strategies to encourage adherence, as the appropriate use of medication can lead to positive health outcomes.

  11. Talk this way: the effect of prosodically conveyed semantic information on memory for novel words.

    Science.gov (United States)

    Shintel, Hadas; Anderson, Nathan L; Fenn, Kimberly M

    2014-08-01

    Speakers modulate their prosody to express not only emotional information but also semantic information (e.g., raising pitch for upward motion). Moreover, this information can help listeners infer meaning. Work investigating the communicative role of prosodically conveyed meaning has focused on reference resolution, and potential mnemonic benefits remain unexplored. We investigated the effect of prosody on memory for the meaning of novel words, even when it conveys superfluous information. Participants heard novel words, produced with congruent or incongruent prosody, and viewed image pairs representing the intended meaning and its antonym (e.g., a small and a large dog). Importantly, an arrow indicated the image representing the intended meaning, resolving the ambiguity. Participants then completed 2 memory tests, either immediately after learning or after a 24-hr delay, on which they chose an image (out of a new image pair) and a definition that best represented the word. On the image test, memory was similar on the immediate test, but incongruent prosody led to greater loss over time. On the definition test, memory was better for congruent prosody at both times. Results suggest that listeners extract semantic information from prosody even when it is redundant and that prosody can enhance memory, beyond its role in comprehension.

  12. Functional analysis of ultra high information rates conveyed by rat vibrissal primary afferents

    Directory of Open Access Journals (Sweden)

    André eMaia Chagas

    2013-12-01

    Full Text Available Sensory receptors determine the type and the quantity of information available for perception. Here, we quantified and characterized the information transferred by primary afferents in the rat whisker system using neural system identification. Quantification of ‘how much’ information is conveyed by primary afferents, using the direct method, a classical information theoretic tool, revealed that primary afferents transfer huge amounts of information (up to 529 bits/s. Information theoretic analysis of instantaneous spike-triggered kinematic stimulus features was used to gain functional insight on ‘what’ is coded by primary afferents. Amongst the kinematic variables tested - position, velocity, and acceleration - primary afferent spikes encoded velocity best. The other two variables contribute to information transfer, but only if combined with velocity. We further revealed three additional characteristics that play a role in information transfer by primary afferents. Firstly, primary afferent spikes show preference for well separated multiple stimuli (i.e. well separated sets of combinations of the three instantaneous kinematic variables. Secondly, spikes are sensitive to short strips of the stimulus trajectory (up to 10 ms pre-spike time, and thirdly, they show spike patterns (precise doublet and triplet spiking. In order to deal with these complexities, we used a flexible probabilistic neuron model fitting mixtures of Gaussians to the spike triggered stimulus distributions, which quantitatively captured the contribution of the mentioned features and allowed us to achieve a full functional analysis of the total information rate indicated by the direct method. We found that instantaneous position, velocity, and acceleration explained about 50% of the total information rate. Adding a 10 ms pre-spike interval of stimulus trajectory achieved 80-90%. The final 10-20% were found to be due to non-linear coding by spike bursts.

  13. The potential risk of communication media in conveying critical information in the aircraft maintenance organisation: a case study

    Science.gov (United States)

    Shukri, S. Ahmad; Millar, R. M.; Gratton, G.; Garner, M.

    2016-10-01

    In the world of aircraft maintenance organisation, verbal and written communication plays a pivotal role in transferring critical information in relation to aircraft safety and efficiency. The communication media used to convey the critical information between departments at an aircraft maintenance organisation have potential risk in misunderstanding of the information. In this study, technical and non-technical personnel from five different departments at an aircraft maintenance organisation were interviewed on the communication media they normally utilised to communicate six different work procedures that are closely related to aircraft safety and efficiency. This is to discover which communication media pose higher risk in misunderstanding critical information. The findings reveal that written communication pose higher risk of misinterpretation compared with verbal communication when conveying critical information between departments.

  14. Eco-label conveys reliable information on fish stock health to seafood consumers.

    Directory of Open Access Journals (Sweden)

    Nicolás L Gutiérrez

    Full Text Available Concerns over fishing impacts on marine populations and ecosystems have intensified the need to improve ocean management. One increasingly popular market-based instrument for ecological stewardship is the use of certification and eco-labeling programs to highlight sustainable fisheries with low environmental impacts. The Marine Stewardship Council (MSC is the most prominent of these programs. Despite widespread discussions about the rigor of the MSC standards, no comprehensive analysis of the performance of MSC-certified fish stocks has yet been conducted. We compared status and abundance trends of 45 certified stocks with those of 179 uncertified stocks, finding that 74% of certified fisheries were above biomass levels that would produce maximum sustainable yield, compared with only 44% of uncertified fisheries. On average, the biomass of certified stocks increased by 46% over the past 10 years, whereas uncertified fisheries increased by just 9%. As part of the MSC process, fisheries initially go through a confidential pre-assessment process. When certified fisheries are compared with those that decline to pursue full certification after pre-assessment, certified stocks had much lower mean exploitation rates (67% of the rate producing maximum sustainable yield vs. 92% for those declining to pursue certification, allowing for more sustainable harvesting and in many cases biomass rebuilding. From a consumer's point of view this means that MSC-certified seafood is 3-5 times less likely to be subject to harmful fishing than uncertified seafood. Thus, MSC-certification accurately identifies healthy fish stocks and conveys reliable information on stock status to seafood consumers.

  15. Always look on both sides: phylogenetic information conveyed by simple sequence repeat allele sequences.

    Directory of Open Access Journals (Sweden)

    Stéphanie Barthe

    Full Text Available Simple sequence repeat (SSR markers are widely used tools for inferences about genetic diversity, phylogeography and spatial genetic structure. Their applications assume that variation among alleles is essentially caused by an expansion or contraction of the number of repeats and that, accessorily, mutations in the target sequences follow the stepwise mutation model (SMM. Generally speaking, PCR amplicon sizes are used as direct indicators of the number of SSR repeats composing an allele with the data analysis either ignoring the extent of allele size differences or assuming that there is a direct correlation between differences in amplicon size and evolutionary distance. However, without precisely knowing the kind and distribution of polymorphism within an allele (SSR and the associated flanking region (FR sequences, it is hard to say what kind of evolutionary message is conveyed by such a synthetic descriptor of polymorphism as DNA amplicon size. In this study, we sequenced several SSR alleles in multiple populations of three divergent tree genera and disentangled the types of polymorphisms contained in each portion of the DNA amplicon containing an SSR. The patterns of diversity provided by amplicon size variation, SSR variation itself, insertions/deletions (indels, and single nucleotide polymorphisms (SNPs observed in the FRs were compared. Amplicon size variation largely reflected SSR repeat number. The amount of variation was as large in FRs as in the SSR itself. The former contributed significantly to the phylogenetic information and sometimes was the main source of differentiation among individuals and populations contained by FR and SSR regions of SSR markers. The presence of mutations occurring at different rates within a marker's sequence offers the opportunity to analyse evolutionary events occurring on various timescales, but at the same time calls for caution in the interpretation of SSR marker data when the distribution of within

  16. Pneumatic conveying design guide

    CERN Document Server

    Mills, David

    1990-01-01

    Pneumatic Conveying Design Guide is a guide for the design of pneumatic conveying systems and includes detailed data and information on the conveying characteristics of a number of materials with a wide range of properties. This book includes logic diagrams for design procedures and scaling parameters for the conveying line configuration. It also explains how to improve the performance of pneumatic conveyors by optimizing, uprating, and extending the system or adapting it for a change of material. This book consists of 15 chapters divided into three sections and opens with an overview of the s

  17. Functional analysis of ultra high information rates conveyed by rat vibrissal primary afferents

    NARCIS (Netherlands)

    A.M. Chagas (André); L. Theis (Lucas); B. Sengupta (Biswa); M.C. Stüttgen (Maik); M. Bethge (Matthias); C. Schwarz (Cornelius)

    2013-01-01

    textabstractSensory receptors determine the type and the quantity of information available for perception. Here, we quantified and characterized the information transferred by primary afferents in the rat whisker system using neural system identification. Quantification of "how much" information is

  18. Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping

    Directory of Open Access Journals (Sweden)

    Prasanth VP

    2006-08-01

    Full Text Available Abstract Background With the advances in DNA sequencer-based technologies, it has become possible to automate several steps of the genotyping process leading to increased throughput. To efficiently handle the large amounts of genotypic data generated and help with quality control, there is a strong need for a software system that can help with the tracking of samples and capture and management of data at different steps of the process. Such systems, while serving to manage the workflow precisely, also encourage good laboratory practice by standardizing protocols, recording and annotating data from every step of the workflow. Results A laboratory information management system (LIMS has been designed and implemented at the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT that meets the requirements of a moderately high throughput molecular genotyping facility. The application is designed as modules and is simple to learn and use. The application leads the user through each step of the process from starting an experiment to the storing of output data from the genotype detection step with auto-binning of alleles; thus ensuring that every DNA sample is handled in an identical manner and all the necessary data are captured. The application keeps track of DNA samples and generated data. Data entry into the system is through the use of forms for file uploads. The LIMS provides functions to trace back to the electrophoresis gel files or sample source for any genotypic data and for repeating experiments. The LIMS is being presently used for the capture of high throughput SSR (simple-sequence repeat genotyping data from the legume (chickpea, groundnut and pigeonpea and cereal (sorghum and millets crops of importance in the semi-arid tropics. Conclusion A laboratory information management system is available that has been found useful in the management of microsatellite genotype data in a moderately high throughput genotyping

  19. The bioclimatological leaflet as a means conveying climatological information to tourists and the tourism industry

    Science.gov (United States)

    Zaninović, Ksenija; Matzarakis, Andreas

    2009-07-01

    Climate is an important resource for tourism and must be taken into account in tourism promotions. Here, a climate leaflet containing climatological and bioclimatological information for tourists is presented. The bioclimatological conditions are portrayed using mean values and frequency of thermal sensation based on physiologically equivalent temperature for 10-day intervals covering the whole year, along with air and sea temperature, sunshine duration, amount and number of days with precipitation and wind roses. In addition, the Climate Tourism Information Scheme is included. When combined with climatological and bioclimatological conditions, this scheme is valuable for tourists as it enables them to choose the most suitable time period for holidays, with the choice depending on personal preferences and requirements. The information provided here assists the tourism industry and stakeholders in decision-making. As an example, the bioclimatological leaflet for Hvar, an island off the Croatian Adriatic coast, is presented.

  20. AMPLIFICATION AND COMPRESSION OF THE TEXT AND ITS TITLE AS A MEANS OF CONVEYING THE INFORMATION STRUCTURE

    Directory of Open Access Journals (Sweden)

    Buyanova, E.V.

    2017-03-01

    Full Text Available This article takes stock of the basic notions of information structure. There are two communicative goals to satisfy: making the information conveyed by the discourse easier for the reader/hearer to understand; indicating what the enunciator considers to be the most important. When translating from one language into another the information structure in most cases remains unchanged. However the text in the target language may not always be completely clear to the new recipient for a number of reasons, such as social and national differences between speakers of the two languages, or lack of realia in the target language. In this case the information structure needs extension in the form of descriptions, definitions, commentaries. This results either in amplification of the text in the target language or in its compression. The present work is based on an analysis of papers from American and British journals and periodicals. The article also deals with the peculiarities of the metaphor as a means of broader text compression in the titles of newspaper articles.

  1. Prions and Protein Assemblies that Convey Biological Information in Health and Disease.

    Science.gov (United States)

    Sanders, David W; Kaufman, Sarah K; Holmes, Brandon B; Diamond, Marc I

    2016-02-03

    Prions derived from the prion protein (PrP) were first characterized as infectious agents that transmit pathology between individuals. However, the majority of cases of neurodegeneration caused by PrP prions occur sporadically. Proteins that self-assemble as cross-beta sheet amyloids are a defining pathological feature of infectious prion disorders and all major age-associated neurodegenerative diseases. In fact, multiple non-infectious proteins exhibit properties of template-driven self-assembly that are strikingly similar to PrP. Evidence suggests that like PrP, many proteins form aggregates that propagate between cells and convert cognate monomer into ordered assemblies. We now recognize that numerous proteins assemble into macromolecular complexes as part of normal physiology, some of which are self-amplifying. This review highlights similarities among infectious and non-infectious neurodegenerative diseases associated with prions, emphasizing the normal and pathogenic roles of higher-order protein assemblies. We propose that studies of the structural and cellular biology of pathological versus physiological aggregates will be mutually informative.

  2. Chameleons communicate with complex colour changes during contests: different body regions convey different information

    Science.gov (United States)

    Ligon, Russell A.; McGraw, Kevin J.

    2013-01-01

    Many animals display static coloration (e.g. of feathers or fur) that can serve as a reliable sexual or social signal, but the communication function of rapidly changing colours (as in chameleons and cephalopods) is poorly understood. We used recently developed photographic and mathematical modelling tools to examine how rapid colour changes of veiled chameleons Chamaeleo calyptratus predict aggressive behaviour during male–male competitions. Males that achieved brighter stripe coloration were more likely to approach their opponent, and those that attained brighter head coloration were more likely to win fights; speed of head colour change was also an important predictor of contest outcome. This correlative study represents the first quantification of rapid colour change using organism-specific visual models and provides evidence that the rate of colour change, in addition to maximum display coloration, can be an important component of communication. Interestingly, the body and head locations of the relevant colour signals map onto the behavioural displays given during specific contest stages, with lateral displays from a distance followed by directed, head-on approaches prior to combat, suggesting that different colour change signals may evolve to communicate different information (motivation and fighting ability, respectively). PMID:24335271

  3. Visual motion-sensitive neurons in the bumblebee brain convey information about landmarks during a navigational task

    Directory of Open Access Journals (Sweden)

    Marcel eMertes

    2014-09-01

    Full Text Available Bees use visual memories to find the spatial location of previously learnt food sites. Characteristic learning flights help acquiring these memories at newly discovered foraging locations where landmarks - salient objects in the vicinity of the goal location - can play an important role in guiding the animal’s homing behavior. Although behavioral experiments have shown that bees can use a variety of visual cues to distinguish objects as landmarks, the question of how landmark features are encoded by the visual system is still open. Recently, it could be shown that motion cues are sufficient to allow bees localizing their goal using landmarks that can hardly be discriminated from the background texture. Here, we tested the hypothesis that motion sensitive neurons in the bee’s visual pathway provide information about such landmarks during a learning flight and might, thus, play a role for goal localization. We tracked learning flights of free-flying bumblebees (Bombus terrestris in an arena with distinct visual landmarks, reconstructed the visual input during these flights, and replayed ego-perspective movies to tethered bumblebees while recording the activity of direction-selective wide-field neurons in their optic lobe. By comparing neuronal responses during a typical learning flight and targeted modifications of landmark properties in this movie we demonstrate that these objects are indeed represented in the bee’s visual motion pathway. We find that object-induced responses vary little with object texture, which is in agreement with behavioral evidence. These neurons thus convey information about landmark properties that are useful for view-based homing.

  4. Combined use of phenotypic and genotypic information in sampling animalsfor genotyping in detection of quantitative trait loci

    DEFF Research Database (Denmark)

    Ansari-Mahyari, S; Berg, P

    2008-01-01

    Conventional selective genotyping which is using the extreme phenotypes (EP) was compared with alternative criteria to find the most informative animals for genotyping with respects to mapping quantitative trait loci (QTL). Alternative sampling strategies were based on minimizing the sampling error...... of the estimated QTL effect (MinERR) and maximizing likelihood ratio test (MaxLRT) using both phenotypic and genotypic information. In comparison, animals were randomly genotyped either within or across families. One hundred data sets were simulated each with 30 half-sib families and 120 daughters per family....... The strategies were compared in these datasets with respect to estimated effect and position of a QTL within a previously defined genomic region at genotyping 10, 20 or 30% of the animals. Combined linkage disequilibrium linkage analysis (LDLA) was applied in a variance component approach. Power to detect QTL...

  5. Multiple plumage traits convey information about age and within-age-class qualities of a canopy-dwelling songbird, the Cerulean Warbler

    Science.gov (United States)

    Boves, Than J.; Buehler, David A.; Wood, Petra Bohall; Rodewald, Amanda D.; Larkin, Jeffrey L.; Keyser, Patrick D.; Wigley, T. Ben

    2014-01-01

    Colorful plumage traits in birds may convey multiple, redundant, or unreliable messages about an individual. Plumage may reliably convey information about disparate qualities such as age, condition, and parental ability because discrete tracts of feathers may cause individuals to incur different intrinsic or extrinsic costs. Few studies have examined the information content of plumage in a species that inhabits forest canopies, a habitat with unique light environments and selective pressures. We investigated the information content of four plumage patches (blue-green crown and rump, tail white, and black breast band) in a canopy-dwelling species, the Cerulean Warbler (Setophaga cerulea), in relation to age, condition, provisioning, and reproduction. We found that older males displayed wider breast bands, greater tail white, and crown and rump feathers with greater blue-green (435–534 nm) chroma and hue than males in their first potential breeding season. In turn, older birds were in better condition (short and long term) and were reproductively superior to younger birds. We propose that these age-related plumage differences (i.e. delayed plumage maturation) were not a consequence of a life history strategy but instead resulted from constraints during early feather molts. Within age classes, we found evidence to support the multiple messages hypothesis. Birds with greater tail white molted tails in faster, those with more exaggerated rump plumage (lower hue, greater blue-green chroma) provisioned more, and those with lower rump blue-green chroma were in better condition. Despite evidence of reliable signaling in this species, we found no strong relationships between plumage and reproductive performance, potentially because factors other than individual differences more strongly influenced fecundity.

  6. Tuberculosis genotyping information management system: enhancing tuberculosis surveillance in the United States.

    Science.gov (United States)

    Ghosh, Smita; Moonan, Patrick K; Cowan, Lauren; Grant, Juliana; Kammerer, Steve; Navin, Thomas R

    2012-06-01

    Molecular characterization of Mycobacterium tuberculosis complex isolates (genotyping) can be used by public health programs to more readily identify tuberculosis (TB) transmission. The Centers for Disease Control and Prevention's National Tuberculosis Genotyping Service has offered M. tuberculosis genotyping for every culture-confirmed case in the United States since 2004. The TB Genotyping Information Management System (TB GIMS), launched in March 2010, is a secure online database containing genotype results linked with case characteristics from the national TB registry for state and local TB programs to access, manage and analyze these data. As of September 2011, TB GIMS contains genotype results for 89% of all culture-positive TB cases for 2010. Over 400 users can generate local and national reports and maps using TB GIMS. Automated alerts on geospatially concentrated cases with matching genotypes that may represent outbreaks are also generated by TB GIMS. TB genotyping results are available to enhance national TB surveillance and apply genotyping results to conduct TB control activities in the United States.

  7. Conveying Campus Sexual Misconduct Policy Information to College and University Students: Results from a 7-Campus Study

    Science.gov (United States)

    Potter, S. J.; Edwards, K. M.; Banyard, V. L.; Stapleton, J. G.; Demers, J. M.; Moynihan, M. M.

    2016-01-01

    Objective: To examine the efficacy of different methods (ie, in-class policy reading; in-class policy reading and discussion; no reading or discussion) to deliver campus sexual misconduct policy information to students on 7 campuses. Participants: A total of 1,195 participants at 7 colleges and universities participated in the study from August to…

  8. Pheromonal cues deposited by mated females convey social information about egg-laying sites in Drosophila melanogaster

    NARCIS (Netherlands)

    Duménil, Claire; Woud, David; Pinto, Francesco; Alkema, Jeroen T; Jansen, Ilse; Van Der Geest, Anne M; Roessingh, Sanne; Billeter, Jean-Christophe

    2016-01-01

    Individuals can make choices based on information learned from others, a phenomenon called social learning. How observers differentiate between which individual they should or should not learn from is, however, poorly understood. Here, we showed that Drosophila melanogaster females can influence the

  9. Pheromonal cues deposited by mated females convey social information about egg-laying sites in Drosophila melanogaster

    NARCIS (Netherlands)

    Duménil, Claire; Woud, David; Pinto, Francesco; Alkema, Jeroen T; Jansen, Ilse; Van Der Geest, Anne M; Roessingh, Sanne; Billeter, Jean-Christophe

    2016-01-01

    Individuals can make choices based on information learned from others, a phenomenon called social learning. How observers differentiate between which individual they should or should not learn from is, however, poorly understood. Here, we showed that Drosophila melanogaster females can influence the

  10. On conveying and not conveying expertise.

    Science.gov (United States)

    Rappert, Brian; Coopmans, Catelijne

    2015-08-01

    This article attends to the movement between disclosing and non-disclosing in accounts of expertise. While referencing discussions about tacit knowledge ('experts know more than they can say') and the politics of non-disclosure ('withholding can help as well as harm the credibility of experts'), in the main it considers how experts move between conveying and not conveying in order to make their proficiencies recognized and accessible to others. The article examines this movement through a form that partakes in it, thus drawing attention to conventions and tensions in how authors make themselves accountable, and their subject matter available, to audiences. It thereby proposes to explore the possibilities of careful, and generative, non-disclosure as part of expert writing practices.

  11. Analysis of phenotype and genotype information for the diagnosis of Marfan syndrome.

    Science.gov (United States)

    Sheikhzadeh, S; Kade, C; Keyser, B; Stuhrmann, M; Arslan-Kirchner, M; Rybczynski, M; Bernhardt, A M; Habermann, C R; Hillebrand, M; Mir, T; Robinson, P N; Berger, J; Detter, C; Blankenberg, S; Schmidtke, J; von Kodolitsch, Y

    2012-09-01

    Marfan syndrome is considered a clinical diagnosis. Three diagnostic classifications comprising first, Marfan genotype with a causative FBN1 gene mutation; second, Marfan phenotype with clinical criteria of the original Ghent nosology (Ghent-1); and third, phenotype with clinical criteria of its current revision (Ghent-2) in 300 consecutive persons referred for confirmation or exclusion of Marfan syndrome (150 men, 150 women aged 35 ± 13 years) were used. Sequencing of TGBR1/2 genes was performed in 128 persons without FBN1 mutation. Marfan genotype was present in 140, Ghent-1 phenotype in 139, and Ghent-2 phenotype in 124 of 300 study patients. Marfan syndrome was confirmed in 94 and excluded in 129 persons consistently by all classifications, but classifications were discordant in 77 persons. With combined genotype and phenotype information confirmation of Marfan syndrome was finally achieved in 126 persons by Ghent-1 and in 125 persons by Ghent-2 among 140 persons with Marfan genotype, and exclusion was accomplished in 139 persons by Ghent-1 and in 141 persons by Ghent-2 among 160 persons without Marfan genotype. In total, genotype information changed final diagnoses in 22 persons with Ghent-1, and in 32 persons with Ghent-2. It is concluded that genotype information is essential for diagnosis or exclusion of Marfan syndrome.

  12. Conveying International Space Station Science

    Science.gov (United States)

    Goza, Sharon P.

    2017-01-01

    Over 1,000 experiments have been completed, and others are being conducted and planed on the International Space Station (ISS). In order to make the information on these experiments accessible, the IGOAL develops mobile applications to easily access this content and video products to convey high level concepts. This presentation will feature the Space Station Research Explorer as well as several publicly available video examples.

  13. Investigation of Combining Plant Genotypic Values and Molecular Marker Information for Constructing Core Subsets

    Institute of Scientific and Technical Information of China (English)

    Jian-Cheng Wang; Jin Hu; Ning-Ning Liu; Hai-Ming Xu; Sheng Zhang

    2006-01-01

    In the present study, a strategy was proposed for constructing plant core subsets by clusters based on the combination of continuous data for genotypic values and discrete data for molecular marker information. A mixed linear model approach was used to predict genotypic values for eliminating the environment effect.The "mixed genetic distance" was designed to solve the difficult problem of combining continuous and discrete data to construct a core subset by cluster. Four commonly used genetic distances for continuous data (Euclidean distance, standardized Euclidean distance, city block distance, and Mahalanobis distance)were used to assess the validity of the continuous data part of the mixed genetic distance; three commonly used genetic distances for discrete data (cosine distance, correlation distance, and Jaccard distance) were used to assess the validity of the discrete data part of the mixed genetic distance. A rice germplasm group with eight quantitative traits and information for 60 molecular markers was used to evaluate the validity of the new strategy. The results suggest that the validity of both parts of the mixed genetic distance are equal to or higher than the common genetic distance. The core subset constructed on the basis of a combination of data for genotypic values and molecular marker information was more representative than that constructed on the basis of data from genotypic values or molecular marker information alone. Moreover, the strategy of using combined data was able to treat dominant marker information and could combine any other continuous data and discrete data together to perform cluster to construct a plant core subset.

  14. MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data

    Science.gov (United States)

    Guignon, V.; Sempere, G.; Sardos, J.; Hueber, Y.; Duvergey, H.; Andrieu, A.; Chase, R.; Jenny, C.; Hazekamp, T.; Irish, B.; Jelali, K.; Adeka, J.; Ayala-Silva, T.; Chao, C.P.; Daniells, J.; Dowiya, B.; Effa effa, B.; Gueco, L.; Herradura, L.; Ibobondji, L.; Kempenaers, E.; Kilangi, J.; Muhangi, S.; Ngo Xuan, P.; Paofa, J.; Pavis, C.; Thiemele, D.; Tossou, C.; Sandoval, J.; Sutanto, A.; Vangu Paka, G.; Yi, G.; Van den houwe, I.; Roux, N.

    2017-01-01

    Abstract Unraveling the genetic diversity held in genebanks on a large scale is underway, due to advances in Next-generation sequence (NGS) based technologies that produce high-density genetic markers for a large number of samples at low cost. Genebank users should be in a position to identify and select germplasm from the global genepool based on a combination of passport, genotypic and phenotypic data. To facilitate this, a new generation of information systems is being designed to efficiently handle data and link it with other external resources such as genome or breeding databases. The Musa Germplasm Information System (MGIS), the database for global ex situ-held banana genetic resources, has been developed to address those needs in a user-friendly way. In developing MGIS, we selected a generic database schema (Chado), the robust content management system Drupal for the user interface, and Tripal, a set of Drupal modules which links the Chado schema to Drupal. MGIS allows germplasm collection examination, accession browsing, advanced search functions, and germplasm orders. Additionally, we developed unique graphical interfaces to compare accessions and to explore them based on their taxonomic information. Accession-based data has been enriched with publications, genotyping studies and associated genotyping datasets reporting on germplasm use. Finally, an interoperability layer has been implemented to facilitate the link with complementary databases like the Banana Genome Hub and the MusaBase breeding database. Database URL: https://www.crop-diversity.org/mgis/

  15. Short communication: imputing genotypes using PedImpute fast algorithm combining pedigree and population information.

    Science.gov (United States)

    Nicolazzi, E L; Biffani, S; Jansen, G

    2013-04-01

    Routine genomic evaluations frequently include a preliminary imputation step, requiring high accuracy and reduced computing time. A new algorithm, PedImpute (http://dekoppel.eu/pedimpute/), was developed and compared with findhap (http://aipl.arsusda.gov/software/findhap/) and BEAGLE (http://faculty.washington.edu/browning/beagle/beagle.html), using 19,904 Holstein genotypes from a 4-country international collaboration (United States, Canada, UK, and Italy). Different scenarios were evaluated on a sample subset that included only single nucleotide polymorphism from the Bovine low-density (LD) Illumina BeadChip (Illumina Inc., San Diego, CA). Comparative criteria were computing time, percentage of missing alleles, percentage of wrongly imputed alleles, and the allelic squared correlation. Imputation accuracy on ungenotyped animals was also analyzed. The algorithm PedImpute was slightly more accurate and faster than findhap and BEAGLE when sire, dam, and maternal grandsire were genotyped at high density. On the other hand, BEAGLE performed better than both PedImpute and findhap for animals with at least one close relative not genotyped or genotyped at low density. However, computing time and resources using BEAGLE were incompatible with routine genomic evaluations in Italy. Error rate and allelic squared correlation attained by PedImpute ranged from 0.2 to 1.1% and from 96.6 to 99.3%, respectively. When complete genomic information on sire, dam, and maternal grandsire are available, as expected to be the case in the close future in (at least) dairy cattle, and considering accuracies obtained and computation time required, PedImpute represents a valuable choice in routine evaluations among the algorithms tested.

  16. Assessment on Evaluating Parameters of Rice Core Collections Constructed by Genotypic Values and Molecular Marker Information

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Eleven evaluating parameters for rice core collection were assessed based on genotypic values and molecular marker information. Monte Carlo simulation combined with mixed linear model was used to eliminate the interference from environment in order to draw more reliable results. The coincidence rate of range (CR) was the optimal parameter. Mean Simpson index (MD), mean Shannon-Weaver index of genetic diversity (M1) and mean polymorphism information content (MPIC) were important evaluating parameters. The variable rate of coefficient of variation (VR) could act as an important reference parameter for evaluating the variation degree of core collection. Percentage of polymorphic loci (p) could be used as a determination parameter for the size of core collection. Mean difference percentage (MD) was a determination parameter for the reliability judgment of core collection. The effective evaluating parameters for core collection selected in the research could be used as criteria for sampling percentage in different plant germplasm populations.

  17. Information schema constructs for defining warehouse databases of genotypes and phenotypes of system manifestation features

    Institute of Scientific and Technical Information of China (English)

    Shahab POURTALEBI‡; Imre HORVÁTH

    2016-01-01

    Our long-term objective is to develop a software toolbox for pre-embodiment design of complex and heterogeneous systems, such as cyber-physical systems. The novelty of this toolbox is that it uses system manifestation features (SMFs) for transdisciplinary modeling of these systems. The main challenges of implementation of the toolbox are functional design- and language-independent computational realization of the warehouses, and systematic development and management of the various evolving implements of SMFs (genotypes, phenotypes, and instances). Therefore, an information schema construct (ISC) based approach is proposed to create the schemata of the associated warehouse databases and the above-mentioned SMF implements. ISCs logically arrange the data contents of SMFs in a set of relational tables of varying semantics. In this article we present the ISCs necessary for creation of genotypes and phenotypes. They increase the efficiency of the database development process and make the data relationships transparent. Our follow-up research focuses on the elaboration of the SMF instances based system modeling methodology.

  18. Statistical inference for Hardy-Weinberg proportions in the presence of missing genotype information.

    Science.gov (United States)

    Graffelman, Jan; Sánchez, Milagros; Cook, Samantha; Moreno, Victor

    2013-01-01

    In genetic association studies, tests for Hardy-Weinberg proportions are often employed as a quality control checking procedure. Missing genotypes are typically discarded prior to testing. In this paper we show that inference for Hardy-Weinberg proportions can be biased when missing values are discarded. We propose to use multiple imputation of missing values in order to improve inference for Hardy-Weinberg proportions. For imputation we employ a multinomial logit model that uses information from allele intensities and/or neighbouring markers. Analysis of an empirical data set of single nucleotide polymorphisms possibly related to colon cancer reveals that missing genotypes are not missing completely at random. Deviation from Hardy-Weinberg proportions is mostly due to a lack of heterozygotes. Inbreeding coefficients estimated by multiple imputation of the missings are typically lowered with respect to inbreeding coefficients estimated by discarding the missings. Accounting for missings by multiple imputation qualitatively changed the results of 10 to 17% of the statistical tests performed. Estimates of inbreeding coefficients obtained by multiple imputation showed high correlation with estimates obtained by single imputation using an external reference panel. Our conclusion is that imputation of missing data leads to improved statistical inference for Hardy-Weinberg proportions.

  19. Evaluation of hepatic glutathione transferase Mu 1 and Theta 1 activities in humans and mice using genotype information.

    Science.gov (United States)

    Arakawa, Shingo; Fujimoto, Kazunori; Kato, Ayako; Endo, Seiko; Fukahori, Aiko; Shinagawa, Akira; Fischer, Thomas; Mueller, Juergen; Takasaki, Wataru

    2012-03-01

    We investigated the impact of glutathione transferases Mu 1 (GSTM1)- and glutathione transferase Theta 1 (GSTT1)-null genotypes on hepatic GST activities in humans and compared the results with those of Gstm1- and Gstt1-null mice. In liver with GSTM1/Gstm1-null genotype, GST activity toward p-nitrobenzyl chloride (NBC) was significantly decreased in both humans and mice. In addition, in liver with GSTT1/Gstt1-null genotype, GST activity toward dichloromethane (DCM) was significantly decreased in both humans and mice. Therefore, null genotypes of GSTM1/Gstm1 and GSTT1/Gstt1 are considered to decrease hepatic GST activities toward NBC and DCM, respectively, in both humans and mice. This observation shows the functional similarity between humans and mice for GSTM1 and GSTT1 toward some substrates. In the case of NBC and DCM, Gst-null mice would be relevant models for humans with GST-null genotype. In addition, decreases in GST activities toward 1,2-dichloro-4-nitrobenzene, trans-4-phenyl-3-buten-2-one, and 1-chloro-2,4,-dinitrobenzene were observed in Gstm1-null mice, and a decrease in GST activity toward 1,2-epoxy-3-(p-nitrophenoxy)propane was observed in Gstt1-null mice. However, an impact of GST-null genotypes on GST activities toward these substrates was not observed in humans. In the case of these mouse-specific substrates, Gst-null mice may be relevant models for humans regardless of GST genotype, because GST activities, which are higher in wild-type mice than in humans, were eliminated in Gst-null mice. This study shows that comparison of hepatic GST activities between humans and mice using genotype information would be valuable in using Gst-null mice as human models.

  20. Conveying movement in music and prosody.

    Directory of Open Access Journals (Sweden)

    Stephen C Hedger

    Full Text Available We investigated whether acoustic variation of musical properties can analogically convey descriptive information about an object. Specifically, we tested whether information from the temporal structure in music interacts with perception of a visual image to form an analog perceptual representation as a natural part of music perception. In Experiment 1, listeners heard music with an accelerating or decelerating temporal pattern, and then saw a picture of a still or moving object and decided whether it was animate or inanimate--a task unrelated to the patterning of the music. Object classification was faster when musical motion matched visually depicted motion. In Experiment 2, participants heard spoken sentences that were accompanied by accelerating or decelerating music, and then were presented with a picture of a still or moving object. When motion information in the music matched motion information in the picture, participants were similarly faster to respond. Fast and slow temporal patterns without acceleration and deceleration, however, did not make participants faster when they saw a picture depicting congruent motion information (Experiment 3, suggesting that understanding temporal structure information in music may depend on specific metaphors about motion in music. Taken together, these results suggest that visuo-spatial referential information can be analogically conveyed and represented by music and can be integrated with speech or influence the understanding of speech.

  1. Conveying movement in music and prosody.

    Science.gov (United States)

    Hedger, Stephen C; Nusbaum, Howard C; Hoeckner, Berthold

    2013-01-01

    We investigated whether acoustic variation of musical properties can analogically convey descriptive information about an object. Specifically, we tested whether information from the temporal structure in music interacts with perception of a visual image to form an analog perceptual representation as a natural part of music perception. In Experiment 1, listeners heard music with an accelerating or decelerating temporal pattern, and then saw a picture of a still or moving object and decided whether it was animate or inanimate--a task unrelated to the patterning of the music. Object classification was faster when musical motion matched visually depicted motion. In Experiment 2, participants heard spoken sentences that were accompanied by accelerating or decelerating music, and then were presented with a picture of a still or moving object. When motion information in the music matched motion information in the picture, participants were similarly faster to respond. Fast and slow temporal patterns without acceleration and deceleration, however, did not make participants faster when they saw a picture depicting congruent motion information (Experiment 3), suggesting that understanding temporal structure information in music may depend on specific metaphors about motion in music. Taken together, these results suggest that visuo-spatial referential information can be analogically conveyed and represented by music and can be integrated with speech or influence the understanding of speech.

  2. Weaving versus blending: a quantitative assessment of the information carrying capacities of two alternative methods for conveying multivariate data with color.

    Science.gov (United States)

    Hagh-Shenas, Haleh; Kim, Sunghee; Interrante, Victoria; Healey, Christopher

    2007-01-01

    In many applications, it is important to understand the individual values of, and relationships between, multiple related scalar variables defined across a common domain. Several approaches have been proposed for representing data in these situations. In this paper we focus on strategies for the visualization of multivariate data that rely on color mixing. In particular, through a series of controlled observer experiments, we seek to establish a fundamental understanding of the information-carrying capacities of two alternative methods for encoding multivariate information using color: color blending and color weaving. We begin with a baseline experiment in which we assess participants' abilities to accurately read numerical data encoded in six different basic color scales defined in the L*a*b* color space. We then assess participants' abilities to read combinations of 2, 3, 4 and 6 different data values represented in a common region of the domain, encoded using either color blending or color weaving. In color blending a single mixed color is formed via linear combination of the individual values in L*a*b* space, and in color weaving the original individual colors are displayed side-by-side in a high frequency texture that fills the region. A third experiment was conducted to clarify some of the trends regarding the color contrast and its effect on the magnitude of the error that was observed in the second experiment. The results indicate that when the component colors are represented side-by-side in a high frequency texture, most participants' abilities to infer the values of individual components are significantly improved, relative to when the colors are blended. Participants' performance was significantly better with color weaving particularly when more than 2 colors were used, and even when the individual colors subtended only 3 minutes of visual angle in the texture. However, the information-carrying capacity of the color weaving approach has its limits. We

  3. Reducing Bias of Allele Frequency Estimates by Modeling SNP Genotype Data with Informative Missingness

    Directory of Open Access Journals (Sweden)

    Wan-Yu eLin

    2012-06-01

    Full Text Available The presence of missing single-nucleotide polymorphism (SNP genotypes is common in genetic data. For studies with low-density SNPs, the most commonly used approach to deal with genotype missingness is to simply remove the observations with missing genotypes from the analyses. This naïve method is straightforward but is appropriate only when the missingness is random. However, a given assay often has a different capability in genotyping heterozygotes and homozygotes, causing the phenomenon of ‘differential dropout’ in the sense that the missing rates of heterozygotes and homozygotes are different. In practice, differential dropout among genotypes exists in even carefully designed studies, such as the data from the HapMap project and the Wellcome Trust Case Control Consortium. In this study, we propose a statistical method to model the differential dropout among different genotypes. Compared with the naïve method, our method provides more accurate allele frequency estimates when the differential dropout is present. To demonstrate its practical use, we further apply our method to the HapMap data and a scleroderma data set.

  4. Abbreviated guide pneumatic conveying design guide

    CERN Document Server

    Mills, David

    1990-01-01

    Abbreviated Guide: Pneumatic Conveying Design Guide describes the selection, design, and specification of conventional pneumatic conveying systems. The design procedure uses previous test data on the materials to be conveyed. The book also discusses system economics, operating costs, the choice of appropriate components or systems, system control, and system flexibility. The design system involves the type of conveying system for installation, the pipeline parameters, and also the plant components. System selection covers the properties of the material to be conveyed, plant layout, material pr

  5. The Bone Dysplasia Ontology: integrating genotype and phenotype information in the skeletal dysplasia domain.

    Science.gov (United States)

    Groza, Tudor; Hunter, Jane; Zankl, Andreas

    2012-03-26

    Skeletal dysplasias are a rare and heterogeneous group of genetic disorders affecting skeletal development. Patients with skeletal dysplasias suffer from many complex medical issues including degenerative joint disease and neurological complications. Because the data and expertise associated with this field is both sparse and disparate, significant benefits will potentially accrue from the availability of an ontology that provides a shared conceptualisation of the domain knowledge and enables data integration, cross-referencing and advanced reasoning across the relevant but distributed data sources. We introduce the design considerations and implementation details of the Bone Dysplasia Ontology. We also describe the different components of the ontology, including a comprehensive and formal representation of the skeletal dysplasia domain as well as the related genotypes and phenotypes. We then briefly describe SKELETOME, a community-driven knowledge curation platform that is underpinned by the Bone Dysplasia Ontology. SKELETOME enables domain experts to use, refine and extend and apply the ontology without any prior ontology engineering experience--to advance the body of knowledge in the skeletal dysplasia field. The Bone Dysplasia Ontology represents the most comprehensive structured knowledge source for the skeletal dysplasias domain. It provides the means for integrating and annotating clinical and research data, not only at the generic domain knowledge level, but also at the level of individual patient case studies. It enables links between individual cases and publicly available genotype and phenotype resources based on a community-driven curation process that ensures a shared conceptualisation of the domain knowledge and its continuous incremental evolution.

  6. The Bone Dysplasia Ontology: integrating genotype and phenotype information in the skeletal dysplasia domain

    Directory of Open Access Journals (Sweden)

    Groza Tudor

    2012-03-01

    Full Text Available Abstract Background Skeletal dysplasias are a rare and heterogeneous group of genetic disorders affecting skeletal development. Patients with skeletal dysplasias suffer from many complex medical issues including degenerative joint disease and neurological complications. Because the data and expertise associated with this field is both sparse and disparate, significant benefits will potentially accrue from the availability of an ontology that provides a shared conceptualisation of the domain knowledge and enables data integration, cross-referencing and advanced reasoning across the relevant but distributed data sources. Results We introduce the design considerations and implementation details of the Bone Dysplasia Ontology. We also describe the different components of the ontology, including a comprehensive and formal representation of the skeletal dysplasia domain as well as the related genotypes and phenotypes. We then briefly describe SKELETOME, a community-driven knowledge curation platform that is underpinned by the Bone Dysplasia Ontology. SKELETOME enables domain experts to use, refine and extend and apply the ontology without any prior ontology engineering experience--to advance the body of knowledge in the skeletal dysplasia field. Conclusions The Bone Dysplasia Ontology represents the most comprehensive structured knowledge source for the skeletal dysplasias domain. It provides the means for integrating and annotating clinical and research data, not only at the generic domain knowledge level, but also at the level of individual patient case studies. It enables links between individual cases and publicly available genotype and phenotype resources based on a community-driven curation process that ensures a shared conceptualisation of the domain knowledge and its continuous incremental evolution.

  7. Evaluating effectiveness of four-parameter compound tactons for conveying urban navigation information%表达城市导航信息的四参数复合式触觉图标效能评估

    Institute of Scientific and Technical Information of China (English)

    贾贞; 李建清; 肖勇

    2015-01-01

    will be a promising method of conveying complex information when navigating in a virtual or real urban environment.

  8. PNEUMATIC CONVEYING OF BIOMASS PARTICLES: A REVIEW

    Institute of Scientific and Technical Information of China (English)

    Heping; Cui

    2006-01-01

    Processes involving biomass are of growing interest, but handling and conveying biomass particles are challenging due to the unusual physical properties of biomass particles. This paper reviews recent work on pneumatic conveying of biomass particles, especially agricultural particles and pulp fibres. Experimental work has been mainly carried out to determine a range of parameters, such as pressure drop, particle velocity, flow regime and electrostatic charging for both horizontal and vertical conveying. Models ranging from empirical to CFD models are also being developed. Difficulties in representing turbulence and interactions among biomass particles and between the particles and fluid have so far limited the success of advanced modeling. Further work is needed to improve understanding of multiphase biomass pneumatic conveying and to assist in the development of biomass energy and conversion processes.

  9. MICROSATELLITE GENOTYPING USING THE BASESTATION DNA FRAGMENT ANALYZER. (R826603)

    Science.gov (United States)

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  10. The use of haiku to convey complex concepts in neuroscience.

    Science.gov (United States)

    Pollack, Alexia E; Korol, Donna L

    2013-01-01

    Conveying scientific content with accuracy and fluency takes practice and requires deep understanding of the concepts being conveyed. This depth of knowledge comes from internalizing information and constructing it into a form that is unique and coherent to the individual. Often in science classrooms there is little or no opportunity for students to practice this type of thinking, activities that we believe are fundamental to effective science communication. This article describes the use of haiku - a 17 syllable poem - as a means for students to convey neurobiological concepts in a succinct manner by forcing them to focus on the most salient features of the observed processes. In our assignments haiku writing was successfully paired with explanations of the students' thought processes (Addiction course) or the scientific evidence to support claims (Neurodegenerative Disease course). We provide examples of student haiku and explanations as evidence of the power of this approach. The coupling of poetry and prose together create rich, accurate descriptions of scientific phenomena by encouraging higher-order thinking. Poetry writing can thus be used across the curriculum to forge comprehension of complex ideas in any discipline and to bridge the arts and the sciences.

  11. 50 CFR 14.107 - Conveyance.

    Science.gov (United States)

    2010-10-01

    ..., EXPORTATION, AND TRANSPORTATION OF WILDLIFE Standards for the Humane and Healthful Transport of Wild Mammals... transport wild mammals or birds to the United States shall be designed, constructed, and maintained so as to... maintained so as to prevent the harmful ingress of engine exhaust fumes and gases produced by the conveyance...

  12. A patient-safety and professional perspective on non-conveyance in ambulance care: a systematic review.

    Science.gov (United States)

    Ebben, Remco H A; Vloet, Lilian C M; Speijers, Renate F; Tönjes, Nico W; Loef, Jorik; Pelgrim, Thomas; Hoogeveen, Margreet; Berben, Sivera A A

    2017-07-17

    This systematic review aimed to describe non-conveyance in ambulance care from patient-safety and ambulance professional perspectives. The review specifically focussed at describing (1) ambulance non-conveyance rates, (2) characteristics of non-conveyed patients, (3) follow-up care after non-conveyance, (4) existing guidelines or protocols, and (5) influencing factors during the non-conveyance decision making process. We systematically searched MEDLINE, PubMed, CINAHL, EMBASE, and reference lists of included articles, in June 2016. We included all types of peer-reviewed designs on the five topics. Couples of two independent reviewers performed the selection process, the quality assessment, and data extraction. We included 67 studies with low to moderate quality. Non-conveyance rates for general patient populations ranged from 3.7%-93.7%. Non-conveyed patients have a variety of initial complaints, common initial complaints are related to trauma and neurology. Furthermore, vulnerable patients groups as children and elderly are more represented in the non-conveyance population. Within 24 h-48 h after non-conveyance, 2.5%-6.1% of the patients have EMS representations, and 4.6-19.0% present themselves at the ED. Mortality rates vary from 0.2%-3.5% after 24 h, up to 0.3%-6.1% after 72 h. Criteria to guide non-conveyance decisions are vital signs, ingestion of drugs/alcohol, and level of consciousness. A limited amount of non-conveyance guidelines or protocols is available for general and specific patient populations. Factors influencing the non-conveyance decision are related to the professional (competencies, experience, intuition), the patient (health status, refusal, wishes and best interest), the healthcare system (access to general practitioner/other healthcare facilities/patient information), and supportive tools (online medical control, high risk card). Non-conveyance rates for general and specific patient populations vary. Patients in the non-conveyance

  13. Optimizing Training Population Size and Genotyping Strategy for Genomic Prediction Using Association Study Results and Pedigree Information. A Case of Study in Advanced Wheat Breeding Lines

    Science.gov (United States)

    Jahoor, Ahmed; Orabi, Jihad; Andersen, Jeppe R.; Janss, Luc L.; Jensen, Just

    2017-01-01

    Wheat breeding programs generate a large amount of variation which cannot be completely explored because of limited phenotyping throughput. Genomic prediction (GP) has been proposed as a new tool which provides breeding values estimations without the need of phenotyping all the material produced but only a subset of it named training population (TP). However, genotyping of all the accessions under analysis is needed and, therefore, optimizing TP dimension and genotyping strategy is pivotal to implement GP in commercial breeding schemes. Here, we explored the optimum TP size and we integrated pedigree records and genome wide association studies (GWAS) results to optimize the genotyping strategy. A total of 988 advanced wheat breeding lines were genotyped with the Illumina 15K SNPs wheat chip and phenotyped across several years and locations for yield, lodging, and starch content. Cross-validation using the largest possible TP size and all the SNPs available after editing (~11k), yielded predictive abilities (rGP) ranging between 0.5–0.6. In order to explore the Training population size, rGP were computed using progressively smaller TP. These exercises showed that TP of around 700 lines were enough to yield the highest observed rGP. Moreover, rGP were calculated by randomly reducing the SNPs number. This showed that around 1K markers were enough to reach the highest observed rGP. GWAS was used to identify markers associated with the traits analyzed. A GWAS-based selection of SNPs resulted in increased rGP when compared with random selection and few hundreds SNPs were sufficient to obtain the highest observed rGP. For each of these scenarios, advantages of adding the pedigree information were shown. Our results indicate that moderate TP sizes were enough to yield high rGP and that pedigree information and GWAS results can be used to greatly optimize the genotyping strategy. PMID:28081208

  14. A fast and practical approach to genotype phasing and imputation on a pedigree with erroneous and incomplete information.

    Science.gov (United States)

    Pirola, Yuri; Della Vedova, Gianluca; Biffani, Stefano; Stella, Alessandra; Bonizzoni, Paola

    2012-01-01

    The MINIMUM-RECOMBINANT HAPLOTYPE CONFIGURATION problem (MRHC) has been highly successful in providing a sound combinatorial formulation for the important problem of genotype phasing on pedigrees. Despite several algorithmic advances that have improved the efficiency, its applicability to real data sets has been limited since it does not take into account some important phenomena such as mutations, genotyping errors, and missing data. In this work, we propose the MINIMUM-RECOMBINANT HAPLOTYPE CONFIGURATION WITH BOUNDED ERRORS problem (MRHCE), which extends the original MRHC formulation by incorporating the two most common characteristics of real data: errors and missing genotypes (including untyped individuals). We describe a practical algorithm for MRHCE that is based on a reduction to the well-known Satisfiability problem (SAT) and exploits recent advances in the constraint programming literature. An experimental analysis demonstrates the biological soundness of the phasing model and the effectiveness (on both accuracy and performance) of the algorithm under several scenarios. The analysis on real data and the comparison with state-of-the-art programs reveals that our approach couples better scalability to large and complex pedigrees with the explicit inclusion of genotyping errors into the model.

  15. Spatial Analysis of Phytophthora infestans Genotypes and Late Blight Severity on Tomato and Potato in the Del Fuerte Valley Using Geostatistics and Geographic Information Systems.

    Science.gov (United States)

    Jaime-Garcia, R; Orum, T V; Felix-Gastelum, R; Trinidad-Correa, R; Vanetten, H D; Nelson, M R

    2001-12-01

    ABSTRACT Genetic structure of Phytophthora infestans, the causal agent of potato and tomato late blight, was analyzed spatially in a mixed potato and tomato production area in the Del Fuerte Valley, Sinaloa, Mexico. Isolates of P. infestans were characterized by mating type, allozyme analysis at the glucose-6-phosphate isomerase and peptidase loci, restriction fragment length polymorphism with probe RG57, metalaxyl sensitivity, and aggressiveness to tomato and potato. Spatial patterns of P. infestans genotypes were analyzed by geographical information systems and geo-statistics during the seasons of 1994-95, 1995-96, and 1996-97. Spatial analysis of the genetic structure of P. infestans indicates that geographic substructuring of this pathogen occurs in this area. Maps displaying the probabilities of occurrence of mating types and genotypes of P. infestans, and of disease severity at a regional scale, were presented. Some genotypes that exhibited differences in epidemiologically important features such as metalaxyl sensitivity and aggressiveness to tomato and potato had a restricted spread and were localized in isolated areas. Analysis of late blight severity showed recurring patterns, such as the earliest onset of the disease in the area where both potato and tomato were growing, strengthening the hypothesis that infected potato tubers are the main source of primary inoculum. The information that geostatistical analysis provides might help improve management programs for late blight in the Del Fuerte Valley.

  16. Humour: Power conveying social structures inside forensic mental health nursing

    DEFF Research Database (Denmark)

    Gildberg, Frederik Alkier; Paaske, Kristian Jul; Rasmussen, Vivian L.;

    2016-01-01

    mental health staff members in interactions with forensic mental health inpatients. The study included 32 forensic mental health staffmembers, used 307 hours of participant observations, 48 informal interviews, and seven formal semistructured nterviews. Outcomes identify four themes concerning...... the conveyance of power to, from, and between forensic mental health staff and patients as they interact: (a) “the informal use: the human-to-human approach,” characterized by an informal use of humor and without any reference tomental health issues; (b) the “formal use of humor: the staff–patient approach......,” characterized as formalwith a view on the patient as mentally ill, unable to understand humor, and with the aim of using humor to prevent conflicts or negative behavior; (c) “protest against requested care: the human–patient approach,” characterized by the use of humor as a protest against requested care...

  17. 21 CFR 1250.51 - Railroad conveyances; discharge of wastes.

    Science.gov (United States)

    2010-04-01

    ... CONVEYANCE SANITATION Equipment and Operation of Land and Air Conveyances § 1250.51 Railroad conveyances... servicing area, toilets shall be kept locked unless means are provided to prevent contamination of the area... Food Safety and Applied Nutrition (HFS-627), Food and Drug Administration, 5100 Paint Branch...

  18. 19 CFR 162.22 - Seizure of conveyances.

    Science.gov (United States)

    2010-04-01

    ... 19 Customs Duties 2 2010-04-01 2010-04-01 false Seizure of conveyances. 162.22 Section 162.22... TREASURY (CONTINUED) INSPECTION, SEARCH, AND SEIZURE Seizures § 162.22 Seizure of conveyances. (a) General applicability. If it shall appear to any officer authorized to board conveyances and make seizures that there...

  19. System and method for conveying an assembly

    KAUST Repository

    Eitelhuber, Georg

    2015-01-15

    An apparatus, system, and method for conveying an assembly along a track. A rail can include a first planar side, a second planar side, and a third planar side. The first, second, and third planar sides can be arranged to form at least two acute angles. A carriage assembly can include a drive wheel and at least two roller sets. The drive wheel can be configured to contact the first planar side and is configured to translate the carriage assembly along the rail. The at least two roller sets can be configured to contact the two other sides to maintain the carriage in contact with the rail.

  20. Vertical-Screw-Auger Conveyer Feeder

    Science.gov (United States)

    Walton, Otis (Inventor); Vollmer, Hubert J. (Inventor)

    2016-01-01

    A conical feeder is attached to a vertically conveying screw auger. The feeder is equipped with scoops and rotated from the surface to force-feed regolith the auger. Additional scoops are possible by adding a cylindrical section above the conical funnel section. Such then allows the unit to collect material from swaths larger in diameter than the enclosing casing pipe of the screw auger. A third element includes a flexible screw auger. All three can be used in combination in microgravity and zero atmosphere environments to drill and recover a wide area of subsurface regolith and entrained volatiles through a single access point on the surface.

  1. 77 FR 43114 - Notice of Realty Action for Lease and Conveyance of Public Land in Volusia County, Florida

    Science.gov (United States)

    2012-07-23

    ... will not be considered. FOR FURTHER INFORMATION CONTACT: Vicky Craft, BLM-ES Southeastern States Field... States mining laws, except for leasing under the mineral leasing laws and conveyance under the R&PP...

  2. Public Land Conveyance Records, Published in Not Provided, 1:4800 (1in=400ft) scale, Insurance Adjuster.

    Data.gov (United States)

    NSGIC GIS Inventory (aka Ramona) — This Public Land Conveyance Records dataset, published at 1:4800 (1in=400ft) scale, was produced all or in part from Published Reports/Deeds information as of Not...

  3. PHENOTYPE PREDICTS THE GENOTYPE OF BRAIN STEM INJURY IN AUTISM. (R824758)

    Science.gov (United States)

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  4. PATHOGENESIS OF BOVINE (GENOTYPE 2) CRYPTOSPORIDIUM PARVUM STRAINS IN NEONATAL AND AGED GNOTOBIOTIC PIGS (R826138)

    Science.gov (United States)

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  5. Multiple coloured ornaments in male common kestrels: different mechanisms to convey quality

    Science.gov (United States)

    Vergara, Pablo; Fargallo, Juan A.

    2011-04-01

    The simultaneous exhibition of more than one secondary sexual trait is a widespread phenomenon in nature, though it has rarely been explored. It has been proposed that different ornaments may convey complementary or back-up information about a single aspect of individual quality (redundancy hypothesis) or that each ornament may convey unique information (multiple-messages hypothesis). During a 5-year period, we measured several carotenoid-based (eye ring, bill cere and tarsi skin) and melanin-based (head, back, rump and tail feathers) potential ornamental colours in male common kestrels. We analysed whether multiple ornaments can convey different or related information about individual quality. We explored whether different ornaments can express different information depending on the pigment (carotenoids or melanins), the time-scale over which the ornament can change (dynamic vs. static) and the season of the year when the ornament is formed. We found that both melanin- and carotenoid- based traits correlated with indexes of quality, including body condition, body condition of their partners and laying date. However, not all ornaments correlated with the same measures of quality. In addition, some ornaments were intercorrelated within the same individuals while others were not. These results suggest that different ornaments can convey information about different qualities, as predicted by the multiple-messages hypothesis. In addition, this study suggests that the predominant pigment (e.g. carotenoid vs. melanin, eumelanin vs. pheomelanin), the time-scale over which the trait is developed (static feathers vs. dynamic skin) and the season of the year at which the ornament is produced can be potential mechanisms to convey different messages in male common kestrels.

  6. Intelligent systems for conveyance and storage infrastructure

    Science.gov (United States)

    Juliano, Thomas M.; Meegoda, Jay N.

    2002-02-01

    The objectives of this research project are to identify, demonstrate, and validate intelligent systems for conveyance and storage infrastructure that will enable effective, affordable, real-time, remote measurement, analysis, and reporting of their structural health. Specifically, the project involves testing and validating smart pipes, which could indicate locations of structurally weak areas, i.e., where leaks are likely to occur, and the location of existing leaks for corrective action. During the initial phase of this project an extensive literature search was conducted to identify technologies that could potentially be used in intelligent systems. Although the search was primarily focused on new emerging smart technologies, consideration was also given to innovative uses of established structural monitoring or testing technologies. Four emerging technologies that can potentially locate structurally weak areas and predict incipient leaks were identified: electrically conducting composite pipes, electrochemistry-based corrosion sensors, instrumented cathodic protection, and distributed piezoelectric sensors. Also identified was an innovative use of acoustic emission techniques to track deterioration in pre-stressed concrete pipes by monitoring energy releases from breaking corroded pre-stressing wires. A review of each of these technologies is presented. During the next phase of the program one or more of these technologies will be tested and evaluated further.

  7. Ethical aspects of participation in the database of genotypes and phenotypes of the National Center for Biotechnology Information: the Cancer and Leukemia Group B Experience.

    Science.gov (United States)

    Peppercorn, Jeffrey; Shapira, Iuliana; Deshields, Teressa; Kroetz, Deanna; Friedman, Paula; Spears, Patricia; Collyar, Deborah E; Shulman, Lawrence N; Dressler, Lynn; Bertagnolli, Monica M

    2012-10-15

    The rapid pace of genetics research, coupled with evolving standards for informed consent, can create ethical challenges regarding future use of tissue or information from completed clinical trials. The Cancer and Leukemia Group B (CALGB) Oncology Cooperative Group was faced with an ethical dilemma regarding sharing genetic data from a completed genome-wide association study (GWAS) that was conducted as part of a large, multicenter breast cancer clinical trial with a national database: the Database of Genotypes and Phenotypes National Center for Biotechnology Information (dbGaP). The CALGB Ethics Committee conducted a series of multidisciplinary meetings and teleconferences involving patient advocates, bioethicists, clinical researchers, and clinical oncologists to evaluate the ethical issues raised by this case and to identify lessons for improving informed consent to future genetics research in oncology trials. The Ethics Committee recommended that GWAS data be provided to dbGaP consistent with documented consent for future use of tissue among trial participants. Ethical issues, including adequacy of informed consent to future research, limitations of privacy in modern genetics research, the potential impact of population-based genetics research on health disparities, and recontact of research participants for clinical care or further research, were identified as major ethical considerations in this area. Although modern standards for informed consent should not prohibit research or sharing of data consistent with participant's intent and the public interest, there is an urgent need for national consensus on the appropriate use of archived tissue and standardized informed consent for future research among cancer clinical trial participants. Copyright © 2012 American Cancer Society.

  8. Desmanthus GENOTYPES

    Directory of Open Access Journals (Sweden)

    JOSÉ HENRIQUE DE ALBUQUERQUE RANGEL

    2015-01-01

    Full Text Available Desmanthus is a genus of forage legumes with potential to improve pastures and livestock produc-tion on clay soils of dry tropical and subtropical regions such as the existing in Brazil and Australia. Despite this patterns of natural or enforced after-ripening of Desmanthus seeds have not been well established. Four year old seed banks of nine Desmanthus genotypes at James Cook University were accessed for their patterns of seed softe-ning in response to a range of temperatures. Persistent seed banks were found to exist under all of the studied ge-notypes. The largest seeds banks were found in the genotypes CPI 78373 and CPI 78382 and the smallest in the genotypes CPI’s 37143, 67643, and 83563. An increase in the percentage of softened seeds was correlated with higher temperatures, in two patterns of response: in some accessions seeds were not significantly affected by tempe-ratures below 80º C; and in others, seeds become soft when temperature rose to as little as 60 ºC. At 80 °C the heat started to depress germination. High seed production of Desmanthus associated with dependence of seeds on eleva-ted temperatures to softening can be a very important strategy for plants to survive in dry tropical regions.

  9. 38 CFR 3.808 - Automobiles or other conveyances; certification.

    Science.gov (United States)

    2010-07-01

    ... 38 Pensions, Bonuses, and Veterans' Relief 1 2010-07-01 2010-07-01 false Automobiles or other....808 Automobiles or other conveyances; certification. (a) Entitlement. A certificate of eligibility for financial assistance in the purchase of one automobile or other conveyance in an amount not exceeding...

  10. 30 CFR 56.19066 - Maximum riders in a conveyance.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Maximum riders in a conveyance. 56.19066 Section 56.19066 Mineral Resources MINE SAFETY AND HEALTH ADMINISTRATION, DEPARTMENT OF LABOR METAL AND... Hoisting Hoisting Procedures § 56.19066 Maximum riders in a conveyance. In shafts inclined over 45...

  11. 30 CFR 57.19066 - Maximum riders in a conveyance.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Maximum riders in a conveyance. 57.19066 Section 57.19066 Mineral Resources MINE SAFETY AND HEALTH ADMINISTRATION, DEPARTMENT OF LABOR METAL AND... Hoisting Hoisting Procedures § 57.19066 Maximum riders in a conveyance. In shafts inclined over 45...

  12. Pneumatic Conveying of Seed Cotton: Minimum Velocity and Pressure Drop

    Science.gov (United States)

    Electricity is a major cost for cotton gins, representing approximately 20% of variable costs. Fans used for pneumatic conveying consume the majority of electricity at cotton gins. Development of control systems to reduce the air velocity used for conveying seed cotton could significantly decrease e...

  13. 30 CFR 56.6205 - Conveying explosives by hand.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Conveying explosives by hand. 56.6205 Section... NONMETAL MINE SAFETY AND HEALTH SAFETY AND HEALTH STANDARDS-SURFACE METAL AND NONMETAL MINES Explosives Transportation § 56.6205 Conveying explosives by hand. Closed, nonconductive containers shall be used to carry...

  14. 30 CFR 57.6205 - Conveying explosives by hand.

    Science.gov (United States)

    2010-07-01

    ... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Conveying explosives by hand. 57.6205 Section... NONMETAL MINE SAFETY AND HEALTH SAFETY AND HEALTH STANDARDS-UNDERGROUND METAL AND NONMETAL MINES Explosives Transportation-Surface and Underground § 57.6205 Conveying explosives by hand. Closed, nonconductive containers...

  15. Critical velocity and dynamic respondency of pipe conveying fluid

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Presents the calculation of critical velocity, natural frequencyand dynamic respondency of fluid-conveying pipe are calculated under different boundary conditions using finite element method, and the use of calculation results to design and research rocket pipes feeding fuel and watery turbine pipes conveying water etc.

  16. 7 CFR 766.353 - Voluntary conveyance of real property.

    Science.gov (United States)

    2010-01-01

    ... beyond those rights under an approved lease-purchase agreement executed according to § 766.154 or... writing; (7) Title insurance or title record for the security, if available; (8) Complete debt settlement... conveyance offer if the value of the property to be conveyed is less than the FLP debt; and (9) Any other...

  17. Humor: Power Conveying Social Structures Inside Forensic Mental Health Nursing.

    Science.gov (United States)

    Gildberg, Frederik A; Paaske, Kristian J; Rasmussen, Vivian L; Nissen, Ricko D; Bradley, Stephen K; Hounsgaard, Lise

    2016-01-01

    According to research literature, humor inside the staff-patient interaction seems to be significant in the area of forensic mental healthcare. However, existing literature on the subject is limited. Therefore, the aim of this study was to explore the characteristics of the use humor by forensic mental health staff members in interactions with forensic mental health inpatients. The study included 32 forensic mental health staff members, used 307 hours of participant observations, 48 informal interviews, and seven formal semistructured interviews. Outcomes identify four themes concerning the conveyance of power to, from, and between forensic mental health staff and patients as they interact: (a) "the informal use: the human-to-human approach," characterized by an informal use of humor and without any reference to mental health issues; (b) the "formal use of humor: the staff-patient approach," characterized as formal with a view on the patient as mentally ill, unable to understand humor, and with the aim of using humor to prevent conflicts or negative behavior; (c) "protest against requested care: the human-patient approach," characterized by the use of humor as a protest against requested care; and the use of (d) "inadequacy humor: the staff-human approach," characterized by the use of inadequacy-humor referring to, for example, patients' physical features. Recommendations and clinical implications are discussed.

  18. Conveying misinformation: Top-ranked Japanese books on tobacco

    Directory of Open Access Journals (Sweden)

    Malone Ruth E

    2011-01-01

    Full Text Available Abstract Background Tobacco control efforts in Japan have lagged other high income countries, possibly because the Japanese government partially owns Japan Tobacco, Inc. In Japan, tobacco use is still often regarded as an issue of manners rather than an issue of health. Information about tobacco is available, but may not always be accurate. We explored what information Japanese consumers might access by reading popular Japanese books about tobacco. Methods We searched Amazon.com Japan using the term "Tobacco", identifying the top 12 books by "relevance" and "bestselling." We eliminated duplicates and books not concerned with tobacco use and classified the remaining books as pro-smoking, anti-smoking, or neutral. We reviewed the pro-smoking books, published 2004-2009, and analyzed examples of misinformation by theme. Results Pro-smoking popular books conveyed five types of misinformation: doubt about science; suggestions that smoking increased health, longevity, virility, etc.; trivializing tobacco's effects; attacking public health advocates/authorities; and linking tobacco use with authenticity, history, or civil rights. At least one book was authored by a former Japan Tobacco employee; another used a popular Japan Tobacco advertising phrase. Conclusions Creating doubt and confusion about tobacco serves tobacco industry interests and re-creates a strategy developed by US tobacco interests more than 40 years ago. Japanese readers may be misled by texts such as those reviewed. Tobacco control and public health advocates in Japan and globally should expose and counter such misinformation. "Naming and shaming" may be effective.

  19. Conveying Environmental Issues with and through Art

    Science.gov (United States)

    Abeles, K. V.

    2016-12-01

    Art has the ability to convey serious environmental issues, inspiring people to respond personally Kim Abeles is an artist who crosses disciplines and media to explore and map urban and global environments. She has exhibited with a unique range of collaborators including smog control agencies, science and natural history museums, and educational and healthcare professionals. Her work has been exhibited across the world. Since 1985, her art projects have explored topics including air and water pollution, refuse and recycling, and consumption. This presentation will discuss three unconventional art projects from inspiration to impact including results. Most can be replicated in any educational or community setting to increase understanding of environmental issues. Abeles's Smog Collector series makes images from polluted air, helping viewers to see the air they breathe in an accessible, engaging, and visceral way. In addition to exhibitions of this work in art museums and galleries, it has been displayed in vehicle emissions testing booths to increase awareness and behavior change, and the process has been taught as curriculum in schools. Abeles sees consumption as a primary problem that leads to environmental decay. Her Paper Person was made from the California Science Center's paper trash that was generated on a single day by their visitors (Earth Day 2009). The 40' x 48' sculpture is in the permanent collection of the CSC, and the text accompanying the artwork prompts visitors to consider bringing their lunches next time instead of buying fast food. Similarly, Paper Person (Harvard Westlake School) is a figurative sculpture made of one week of students' paper trash. Exhibited in the school's gallery, students were able to identify their own scraps, and to see how their consumption and trash adds up. When the artwork was exhibited, the school decided to change the way they handled their lunch preparation, bottled water, and trash. gallery-of-solutions was a recent

  20. RELATIONSHIP OF PHENOL SULFOTRANSFERASE (SULT1A1) GENOTYPE TO SULFOTRANSFERASE ACTIVITY PHENOTYPE IN PLATELET CYTOSOL. (R825280)

    Science.gov (United States)

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  1. Development and evaluation of temporary placement and conveyance operation simulation system using augmented reality

    Energy Technology Data Exchange (ETDEWEB)

    Yan, Weida; Aoyama, Shuhei; Ishii, Hirotake; Shimoda, Hiroshi [Graduate School of Energy Science, Kyoto University, Kyoto (Japan); Sang, Tran T.; Inge, Solhang Lars [AR Lab, Halden (Norway); Lygren, Toppe Aleksander; Terje, Johnsen [Institute for Energy Technolog, Halden (Norway); Izumi, Masanori [Fugen Decommissioning Engineering Center, Japan Atomic Energy Agency, Fukui (Japan)

    2012-06-15

    When decommissioning a nuclear power plant, it is difficult to make an appropriate plan to ensure sufficient space for temporary placement and conveyance operations of dismantling targets. This paper describes a system to support temporary placement and conveyance operations using augmented reality (AR). The system employs a laser range scanner to measure the three-dimensional (3D) information of the environment and a dismantling target to produce 3D surface polygon models. Then, the operator simulates temporary placement and conveyance operations using the system by manipulating the obtained 3D model of the dismantling target in the work field. Referring to the obtained 3D model of the environment, a possible collision between the dismantling target and the environment is detectable. Using AR, the collision position is presented intuitively. After field workers evaluated this system, the authors concluded that the system is feasible and acceptable to verify whether spaces for passage and temporary storage are sufficient for temporary placement and conveyance operations. For practical use in the future, some new functions must be added to improve the system. For example, it must be possible for multiple workers to use the system simultaneously by sharing the view of dismantling work.

  2. 27 CFR 19.588 - Construction of bulk conveyances.

    Science.gov (United States)

    2010-04-01

    ... compartment) shall be so arranged that it can be completely drained. (3) Each tank car or tank truck shall... device, for carrying required marks or brands shall be provided on each bulk conveyance. (6)...

  3. [Title conveyance: Fish Springs National Wildlife Refuge: Papers and documentation

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This is a collection of documents pertaining to title conveyance of Fish Springs National Wildlife Refuge. The following material is included; tract description,...

  4. Studies on positive conveying in helically channeled single screw extruders

    Directory of Open Access Journals (Sweden)

    L. Pan

    2012-07-01

    Full Text Available A solids conveying theory called double-flight driving theory was proposed for helically channeled single screw extruders. In the extruder, screw channel rotates against static barrel channel, which behaves as cooperative embedded twin-screws for the positive conveying. They turn as two parallel arc plates, between which an arc-plate solid-plug was assumed. By analyzing the forces on the solid-plug in the barrel channel and screw channel, the boundary conditions when the solid-plug is waived of being cut off on barrel wall, were found to have the capacity of the positive conveying. Experimental data were obtained using a specially designed extruder with a helically channeled barrel in the feeding zone and a pressure-adjustable die. The effects of the barrel channel geometry and friction coefficients on the conveying mechanism were presented and compared with the experimental results. The simulations showed that the positive conveying could be achieved after optimizing extruder designs. Compared with the traditional design with the friction-drag conveying, the throughput is higher while screw torque and energy consumption are decreased. Besides, the design criteria of the barrel channel were also discussed.

  5. Public Land Conveyance Records, Public Land Records, Published in 1997, 1:24000 (1in=2000ft) scale, Lafayette County Land Records.

    Data.gov (United States)

    NSGIC GIS Inventory (aka Ramona) — This Public Land Conveyance Records dataset, published at 1:24000 (1in=2000ft) scale, was produced all or in part from Published Reports/Deeds information as of...

  6. Dynamic Behavior of Axially Functionally Graded Pipes Conveying Fluid

    Directory of Open Access Journals (Sweden)

    Chen An

    2017-01-01

    Full Text Available Dynamic behavior of axially functionally graded (FG pipes conveying fluid was investigated numerically by using the generalized integral transform technique (GITT. The transverse vibration equation was integral transformed into a coupled system of second-order differential equations in the temporal variable. The Mathematica’s built-in function, NDSolve, was employed to numerically solve the resulting transformed ODE system. Excellent convergence of the proposed eigenfunction expansions was demonstrated for calculating the transverse displacement at various points of axially FG pipes conveying fluid. The proposed approach was verified by comparing the obtained results with the available solutions reported in the literature. Moreover, parametric studies were performed to analyze the effects of Young’s modulus variation, material distribution, and flow velocity on the dynamic behavior of axially FG pipes conveying fluid.

  7. STABILITY ANALYSIS OF VISCOELASTIC CURVED PIPES CONVEYING FLUID

    Institute of Scientific and Technical Information of China (English)

    WANG Zhong-min; ZHANG Zhan-wu; ZHAO Feng-qun

    2005-01-01

    Based on the Hamilton's principle for elastic systems of changing mass, a differential equation of motion for viscoelastic curved pipes conveying fluid was derived using variational method, and the complex characteristic equation for the viscoelastic circular pipe conveying fluid was obtained by normalized power series method. The effects of dimensionless delay time on the variation relationship between dimensionless complex frequency of the clamped-clamped viscoelastic circular pipe conveying fluid with the Kelvin-Voigt model and dimensionless flow velocity were analyzed. For greater dimensionless delay time, the behavior of the viscoelastic pipe is that the first, second and third mode does not couple, while the pipe behaves divergent instability in the first and second order mode, then single-mode flutter takes place in the first order mode.

  8. Potentiality and evocation in the meanings conveyed by the image

    Directory of Open Access Journals (Sweden)

    Solange Maria da Silva

    2013-08-01

    Full Text Available The aim of the investigation in this study was to understand how the evocation power is produced in an image and the influence of its incorporation into the meaning yielded by the visual content. A correlation was established between a list of properties drawn from these images, considering the end to which there are meant, and their ability to preserve the artistic appeal featured on them at the moment they were composed. Three key fundamentals were focused as presuppositions: a Nowadays, images are conveyed by the cultural industry in a frenetic and continuous path; b A great number of such images are capable of producing such an evocation power that can induce the viewer to changes in attitude, persuading him/her to uncontrolled consumerism and to standardization; c Others are capable of a considerable strength to evoke violence, through high dramatic and tragic contents. Data were collected from photography and pictorial works, sorted by criteria of their being built for a purpose. The analyses were effected by way of three correlations from their technical plasticity: image and a travel experience, image and urban chaos experience, image and aesthetic experience. The methodological procedures were built through the semiotic concepts as stated by the theory of signs by Charles S. Peirce and their dialogue with the notions of informativity, Jackobson?s language functions, and the constitution of poetic communication. The indications found in these images made it possible to infer on the presence of an immanent artistry that can either be responsible for instigating the receptor, as well as projecting him/her to the multiplicity of meanings found within the miscellaneous hybrid languages and styles typical of the complexity of contemporary society.

  9. Impact of sorption phenomena on multiphase conveying processes

    Science.gov (United States)

    Hatesuer, Florian; Groth, Tillmann; Reichwage, Mark; Mewes, Dieter; Luke, Andrea

    2011-08-01

    Twin-screw multiphase pumps are employed increasingly to convey multiphase mixtures of crude oil, accompanying fluids, associated gas and solid particles. They are positive displacement pumps and suitable for handling products containing liquid accompanied by large amounts of gas. Experimental investigations on the conveying characteristic, namely measuring the delivered volume flow as a function of the pressure difference, provide results for selected mixtures. By means of the on hand work, the influence of sorption phenomena occurring due to pressure variations alongside the conveying process on the conveying characteristics of twin-screw pumps delivering mixtures of oil and gases is measured. The employed gases are air and carbon dioxide, which differ strongly in solubility in oil. All experiments are conducted in a closed loop test facility, where oil and gas volume flows are mixed before the inlet and separated after the outlet of the multiphase pump. In order to simulate the influence of the suction side pressure drop in the reservoir on the conveying characteristic, packed beds are employed as oil-filed model. Sorption processes inside of the oil-field model and within the multiphase pump affect the conveying behaviour significantly. The two-phase flow in the inlet and outlet pipe is visualised by means of a capacitance tomography system. Results show that the oil fraction of the total delivered volume flow is decreased due to desorption at the pump inlet. The gas fraction at the pump outlet is further decreased due to absorption. Experimental results are compared to calculated solubilities of the on-hand gases in oil and to the theoretically derived gas volume flow fraction expected at the multiphase pump.

  10. CHAOTIC TRANSIENTS IN A CURVED FLUID CONVEYING TUBE

    Institute of Scientific and Technical Information of China (English)

    Ni Qiao; Wang Lin; Qian Qin

    2005-01-01

    The chaotic transients of a curved fluid conveying tube subjected to a nonlinear foundation are investigated. The assumption of the inextensibility of the tube is applied to derive the nonlinear differential equation of motion via the Newtonian approach, with the differential quadrature method used to discretize the curved tube model in the spatial domain. And the nonlinear dynamic motion equation is obtained. The numerical analysis shows that, the final steady states are sensitive to the initial system conditions in a large parameter region of the fluid speed. This phenomenon of chaotic transients is infrequent for fluid conveying tubes.

  11. Experimental Study on Vertical Dilute Phase Gas Conveying

    Institute of Scientific and Technical Information of China (English)

    景山; 王金福; 等

    2003-01-01

    An experimental study of vertical gas conveying Geldart-D powder as a dilute phase is performed in a pipe of length 22m and internal diameter 0.05m using a fluidized blow tank at gas velocity ranging from 5m ·s-1 to 13m·s-1 and loading ratio up to about 30.The characteristics of gas conveying,such as pressure drop,the choking velocity and the minimum primary velocity of the fluidized blow tank,are discussed in detail.

  12. EVALUATION OF INFANT METHYLENETETRAHYDROFOLATE REDUCTASE GENOTYPE, MATERNAL VITAMIN USE, AND RISK OF HIGH VERSUS LOW LEVEL SPINA BIFIDA DEFECTS. (R828292)

    Science.gov (United States)

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  13. EVALUATION OF INFANT METHYLENETETRAHYDROFOLATE REDUCTASE GENOTYPE, MATERNAL VITAMIN USE, AND RISK OF HIGH VERSUS LOW LEVEL SPINA BIFIDA DEFECTS. (R828292)

    Science.gov (United States)

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  14. An Instructional Method Suggestion: Conveying Stories through Origami (Storigami)

    Science.gov (United States)

    Oguz, Aysegul

    2016-01-01

    The purpose of this study was to elucidate how to convey stories through origami and suggest its use in education with the help of pre-service elementary teachers' opinions. The participants of the study were 103 elementary teacher candidates from a state university in the 2014-2015 academic year. In this qualitative study, the data were collected…

  15. 38 CFR 36.4323 - Election to convey security.

    Science.gov (United States)

    2010-07-01

    ... security. 36.4323 Section 36.4323 Pensions, Bonuses, and Veterans' Relief DEPARTMENT OF VETERANS AFFAIRS... Election to convey security. (a) If the holder acquires the property that secured the guaranteed loan at... holder. (11) In respect to a property which was the security for a condominium loan guaranteed or...

  16. Persuasive Structures in Advergames. Conveying Advertising Messages through Digital Games

    NARCIS (Netherlands)

    de la Hera Conde-Pumpido, T.

    2014-01-01

    The evolution of the game industry and changes in the advertising landscape in recent years have led to a keen interest of marketers in using digital games for advertising purposes. Digital games specifically designed for a brand with the aim of conveying an advertising message, are known as adverga

  17. Persuasive Structures in Advergames. Conveying Advertising Messages through Digital Games

    NARCIS (Netherlands)

    de la Hera Conde-Pumpido, T.

    2014-01-01

    The evolution of the game industry and changes in the advertising landscape in recent years have led to a keen interest of marketers in using digital games for advertising purposes. Digital games specifically designed for a brand with the aim of conveying an advertising message, are known as

  18. Persuasive Structures in Advergames. Conveying Advertising Messages through Digital Games

    NARCIS (Netherlands)

    de la Hera Conde-Pumpido, T.|info:eu-repo/dai/nl/331869063

    2014-01-01

    The evolution of the game industry and changes in the advertising landscape in recent years have led to a keen interest of marketers in using digital games for advertising purposes. Digital games specifically designed for a brand with the aim of conveying an advertising message, are known as adverga

  19. Conveying Lava Flow Hazards Through Interactive Computer Models

    Science.gov (United States)

    Thomas, D.; Edwards, H. K.; Harnish, E. P.

    2007-12-01

    As part of an Information Sciences senior class project, a software package of an interactive version of the FLOWGO model was developed for the Island of Hawaii. The software is intended for use in an ongoing public outreach and hazards awareness program that educates the public about lava flow hazards on the island. The design parameters for the model allow an unsophisticated user to initiate a lava flow anywhere on the island and allow it to flow down-slope to the shoreline while displaying a timer to show the rate of advance of the flow. The user is also able to modify a range of input parameters including eruption rate, the temperature of the lava at the vent, and crystal fraction present in the lava at the source. The flow trajectories are computed using a 30 m digital elevation model for the island and the rate of advance of the flow is estimated using the average slope angle and the computed viscosity of the lava as it cools in either a channel (high heat loss) or lava tube (low heat loss). Even though the FLOWGO model is not intended to, and cannot, accurately predict the rate of advance of a tube- fed or channel-fed flow, the relative rates of flow advance for steep or flat-lying terrain convey critically important hazard information to the public: communities located on the steeply sloping western flanks of Mauna Loa may have no more than a few hours to evacuate in the face of a threatened flow from Mauna Loa's southwest rift whereas communities on the more gently sloping eastern flanks of Mauna Loa and Kilauea may have weeks to months to prepare for evacuation. Further, the model also can show the effects of loss of critical infrastructure with consequent impacts on access into and out of communities, loss of electrical supply, and communications as a result of lava flow implacement. The interactive model has been well received in an outreach setting and typically generates greater involvement by the participants than has been the case with static maps

  20. Hepatitis C virus genotypes in Pakistan: a systemic review

    Directory of Open Access Journals (Sweden)

    Ali Ijaz

    2011-09-01

    Full Text Available Abstract Background and aim Phylogenetic analysis has led to the classification of hepatitis C virus (HCV into 1-6 major genotypes. HCV genotypes have different biological properties, clinical outcome and response to antiviral treatment and provide important clues for studying the epidemiology, transmission and pathogenesis. This article deepens the current molecular information about the geographical distribution of HCV genotypes and subgenotypes in population of four provinces of Pakistan. 34 published papers (1996-2011 related to prevalence of HCV genotypes/serotypes and subgenotypes in Pakistan were searched. Result HCV genotype/s distribution from all 34 studies was observed in 28,400 HCV infected individuals in the following pattern: 1,999 (7.03% cases of genotype 1; 1,085 (3.81% cases of genotype 2; 22,429 (78.96% cases of genotype 3; 453 (1.59% cases of genotype 4; 29 (0.10% cases of genotype 5; 37 (0.13% cases of genotype 6; 1,429 (5.03% cases of mixed genotypes, and 939 (3.30% cases of untypeable genotypes. Overall, genotype 3a was the predominant genotype with a rate of 55.10%, followed by genotype 1a, 3b and mixed genotype with a rate of 10.25%, 8.20%, and 5.08%, respectively; and genotypes 4, 5 and 6 were rare. Genotype 3 occurred predominately in all the provinces of Pakistan. Second more frequently genotype was genotype 1 in Punjab province and untypeable genotypes in Sindh, Khyber Pakhtunkhwa and Balochistan provinces.

  1. Book reviews: About the art of conveying art!

    Directory of Open Access Journals (Sweden)

    Thurid Vold

    2015-10-01

    Full Text Available Three books about the art of convey art are reviewed: Formidling av kunst til barn og unge (Dissemination of art to children and young people by Arne Marius Samuelsen, Dialogbasert Undervisning. Kunstmuseet som læringsrom (Dialog Based Teaching. The Art museum as learning space by Olga Dysthe, Nana Bernhardt and Line Enskjønn, and Kunsten å formidle (The Art to convey by Alfred Oftedal Telhaug. The reviewer writes that all three books are great contributions to the literature on art mediation and are indispensable for all who teach children and youth in schools and museums. The books should have a prominent place on the bibliography for teacher students in Art and Crafts, Primary and Secondary Teacher Education and Early Childhood Education and for museum educators.

  2. Dynamics of fluid-conveying pipes: effects of velocity profiles

    DEFF Research Database (Denmark)

    Enz, Stephanie; Thomsen, Jon Juel

    Varying velocity profiles and internal fluid loads on fluid-conveying pipes are investigated. Different geometric layouts of the fluid domain and inflow velocity profiles are considered. It is found that the variation of the velocity profiles along the bended pipe is considerable. A determination...... of the resulting fluid loads on the pipe walls is of interest e.g, for evaluating the dynamical behaviour of lightly damped structures like Coriolis flow meters....

  3. Transforming microbial genotyping: a robotic pipeline for genotyping bacterial strains.

    Directory of Open Access Journals (Sweden)

    Brian O'Farrell

    Full Text Available Microbial genotyping increasingly deals with large numbers of samples, and data are commonly evaluated by unstructured approaches, such as spread-sheets. The efficiency, reliability and throughput of genotyping would benefit from the automation of manual manipulations within the context of sophisticated data storage. We developed a medium- throughput genotyping pipeline for MultiLocus Sequence Typing (MLST of bacterial pathogens. This pipeline was implemented through a combination of four automated liquid handling systems, a Laboratory Information Management System (LIMS consisting of a variety of dedicated commercial operating systems and programs, including a Sample Management System, plus numerous Python scripts. All tubes and microwell racks were bar-coded and their locations and status were recorded in the LIMS. We also created a hierarchical set of items that could be used to represent bacterial species, their products and experiments. The LIMS allowed reliable, semi-automated, traceable bacterial genotyping from initial single colony isolation and sub-cultivation through DNA extraction and normalization to PCRs, sequencing and MLST sequence trace evaluation. We also describe robotic sequencing to facilitate cherrypicking of sequence dropouts. This pipeline is user-friendly, with a throughput of 96 strains within 10 working days at a total cost of 200,000 items were processed by two to three people. Our sophisticated automated pipeline can be implemented by a small microbiology group without extensive external support, and provides a general framework for semi-automated bacterial genotyping of large numbers of samples at low cost.

  4. Conveying a probabilistic genetic test result to families with an inherited heart disease.

    Science.gov (United States)

    Ingles, Jodie; Semsarian, Christopher

    2014-06-01

    The evolution of genetic testing in the past few years has been astounding. In a matter of only a few years, we now have comprehensive gene tests comprising vast panels of "cardiac" genes, whole exome sequencing (the entire coding region) and even whole genome sequencing (the entire genome). Making the call as to whether a DNA variant is causative or benign is difficult and the focus of intense research efforts. In most cases, the final answer will not be a simple yes/no outcome but rather a graded continuum of pathogenicity. This allows classification of variants in a more probabilistic way. How we convey this to a patient is the challenge, and certainly shines a spotlight on the important skills of the cardiac genetic counselor. This is an exciting step forward, but the overwhelming complexity of the information generated from these tests means our current practices of conveying genetic information to the family must be carefully considered. Despite the challenges, a genetic diagnosis in a family has great benefit both in reassuring unaffected family members and removing the need for lifetime clinical surveillance. The multidisciplinary specialized clinic model, incorporating genetic counselors, cardiologists and geneticists, provides the ideal framework for ensuring the best possible care for genetic heart disease families. Copyright © 2014 Heart Rhythm Society. Published by Elsevier Inc. All rights reserved.

  5. Testing communication strategies to convey genomic concepts using virtual reality technology.

    Science.gov (United States)

    Kaphingst, Kimberly A; Persky, Susan; McCall, Cade; Lachance, Christina; Beall, Andrew C; Blascovich, Jim

    2009-06-01

    Health professionals need to be able to communicate information about genomic susceptibility in understandable and usable ways, but substantial challenges are involved. We developed four learning modules that varied along two factors: (1) learning mode (active learning vs. didactic learning) and (2) metaphor (risk elevator vs. bridge) and tested them using a 2 x 2 between-subjects, repeated measures design. The study used an innovative virtual reality technology experimental platform; four virtual worlds were designed to convey the concept that genetic and behavioral factors interact to affect common disease risk. The primary outcome was comprehension (recall, transfer). Study participants were 42 undergraduates aged 19-23. The results indicated that the elevator metaphor better supported learning of the concept than the bridge metaphor. Mean transfer score was significantly higher for the elevator metaphor (p learning than active learning (p learning (e.g., motivation), however, were generally higher for the active learning worlds. The results suggested that active learning might not always be more effective than didactic learning in increasing comprehension of health information. The findings also indicated that less complex metaphors might convey abstract concepts more effectively.

  6. 78 FR 53476 - Notice of Realty Action: Classification for Lease and Subsequent Conveyance for Recreation and...

    Science.gov (United States)

    2013-08-29

    ... Bureau of Land Management Notice of Realty Action: Classification for Lease and Subsequent Conveyance for... Management (BLM) has examined and found suitable for classification for lease and subsequent conveyance under... classification of the land for lease and subsequent conveyance of the land, and the environmental...

  7. 75 FR 10817 - Notice of Realty Action: Recreation and Public Purposes Act Classification and Conveyance; Lake...

    Science.gov (United States)

    2010-03-09

    ...: Interested parties may submit written comments regarding this proposed classification or lease/conveyance of... County, Florida, has been examined and found suitable for classification for lease or conveyance under... for lease or conveyance under the R&PP Act and leasing under the mineral leasing laws....

  8. AFLP analysis among Ethiopian arabica coffee genotypes

    African Journals Online (AJOL)

    STORAGESEVER

    2008-09-17

    Sep 17, 2008 ... sequence information, produces a large number of infor- mative polymorphic markers per primer, requires a small amount of ..... and 53 were monomorphic across all coffee genotypes collected from .... molecular markers.

  9. Hepatitis C virus genotypes in Myanmar.

    Science.gov (United States)

    Win, Nan Nwe; Kanda, Tatsuo; Nakamoto, Shingo; Yokosuka, Osamu; Shirasawa, Hiroshi

    2016-07-21

    Myanmar is adjacent to India, Bangladesh, Thailand, Laos and China. In Myanmar, the prevalence of hepatitis C virus (HCV) infection is 2%, and HCV infection accounts for 25% of hepatocellular carcinoma. In this study, we reviewed the prevalence of HCV genotypes in Myanmar. HCV genotypes 1, 3 and 6 were observed in volunteer blood donors in and around the Myanmar city of Yangon. Although there are several reports of HCV genotype 6 and its variants in Myanmar, the distribution of the HCV genotypes has not been well documented in areas other than Yangon. Previous studies showed that treatment with peginterferon and a weight-based dose of ribavirin for 24 or 48 wk could lead to an 80%-100% sustained virological response (SVR) rates in Myanmar. Current interferon-free treatments could lead to higher SVR rates (90%-95%) in patients infected with almost all HCV genotypes other than HCV genotype 3. In an era of heavy reliance on direct-acting antivirals against HCV, there is an increasing need to measure HCV genotypes, and this need will also increase specifically in Myanmar. Current available information of HCV genotypes were mostly from Yangon and other countries than Myanmar. The prevalence of HCV genotypes in Myanmar should be determined.

  10. Genotype adaptability and stability

    Directory of Open Access Journals (Sweden)

    Dimitrijević Miodrag

    2000-01-01

    Full Text Available One of the primary concerns in breeding programs is a small genotype reaction to environmental factor variation for better usage of yield genetic potential. Particularly if one takes in consideration that yield could van greatly because of more and more variable meteorological conditions. Studies conducted to observe genotype and environmental relations relay on numerous mathematical models, but genotype behavior in various ecological conditions is not, still, precisely defined Major sources of variation influencing genotype behavior in different environments are genotype/environment interaction, genetic background and environmental conditions. These factors could play an important role in establishing growth regions for maximal realization of genotype genetic potential, as well as in selection of genotypes having better response to complex requirements of particular growth region. Stability, the genotype ability to perform high, uniform yield no meter of different environmental conditions, and adaptability, genotype ability to give uniform yield in a different environmental conditions, are two common terms used to define genotype reaction in a consequence of environmental changes. Most of the models dealing with stability and adaptability are based on variation sources appearing under the influence of treatment, multivariate effects and residue. No meter which statistical model is used for GE interaction estimation, there is an opinion that no solid proof for the existence of stable genotypes obtained in breeding programs, which make some space for further investigations. There are still questions to answer dealing with definitions, sources of variation, usage value of existent models and interpretation of the results. .

  11. A genotype probability index for multiple alleles and haplotypes.

    Science.gov (United States)

    Percy, A; Kinghorn, B P

    2005-12-01

    We use linear algebra to calculate an index of information content in genotype probabilities which has previously been calculated using trigonometry. The new method can be generalized allowing the index to be calculated for loci with more than two alleles. Applications of this index include its use in genotyping strategies, strategies to manage genetic disorders and in estimation of genotype effects.

  12. Articulated pipes conveying fluid pulsating with high frequency

    DEFF Research Database (Denmark)

    Jensen, Jakob Søndergaard

    1999-01-01

    Stability and nonlinear dynamics of two articulated pipes conveying fluid with a high-frequency pulsating component is investigated. The non-autonomous model equations are converted into autonomous equations by approximating the fast excitation terms with slowly varying terms. The downward hanging...... pipe position will lose stability if the mean flow speed exceeds a certain critical value. Adding a pulsating component to the fluid flow is shown to stabilize the hanging position for high values of the ratio between fluid and pipe-mass, and to marginally destabilize this position for low ratios...

  13. Static stability of collapsible tube conveying non-Newtonian fluid

    CERN Document Server

    Yushutin, V S

    2014-01-01

    The global static stability of a Starling Resistor conveying non-Newtonian fluid is considered. The Starling Resistor consists of two rigid circular tubes and axisymmetric collapsible tube mounted between them. Upstream and downstream pressures are the boundary condition as well as external to the collapsible tube pressure. Quasi one-dimensional model has been proposed and a boundary value problem in terms of nondimensional parameters obtained. Nonuniqueness of the boundary value problem is regarded as static instability. The analytical condition of instability which defines a surface in parameter space has been studied numerically. The influence of fluid rheology on stability of collapsible tube is established.

  14. Finite Element Analysis of Fluid-Conveying Timoshenko Pipes

    Directory of Open Access Journals (Sweden)

    Chih-Liang Chu

    1995-01-01

    Full Text Available A general finite element formulation using cubic Hermitian interpolation for dynamic analysis of pipes conveying fluid is presented. Both the effects of shearing deformations and rotary inertia are considered. The development retains the use of the classical four degrees-of-freedom for a two-node element. The effect of moving fluid is treated as external distributed forces on the support pipe and the fluid finite element matrices are derived from the virtual work done due to the fluid inertia forces. Finite element matrices for both the support pipe and moving fluid are derived and given explicitly. A numerical example is given to demonstrate the validity of the model.

  15. What is the primary driver of downstream connectivity: runoff generation, storage or conveyance?

    Science.gov (United States)

    Ali, G.; Elliott, J.; Lobb, D.; Yarotski, J.

    2013-12-01

    Understanding how headwater streams are connected to downstream areas through the generation and delivery of stream discharge is critical for process conceptualization and hydrological modelling. Several factors have been shown to influence downstream connectivity (DC), notably the location of runoff-generating areas, the mitigating effect of surface depressional storage areas on the delivery of runoff to streams, and the effectiveness of diffuse and concentrated flow paths as runoff conveyance features. Limited efforts have been made to rank these factors in order of importance. Here we aimed to identify the relative influence of runoff generation, storage and conveyance factors on DC in an agricultural Prairie watershed. The 75 km2 South Tobacco Creek Watershed (STCW, south-central Manitoba, Canada) is drained by a 20 km-long creek that drops nearly 200 m in elevation over its course; it is characterized by highly seasonal dynamics such as sheet flow on frozen ground in spring, intermittent flow in summer, and significant surface and subsurface flow events in fall. Hourly discharge records were obtained for seven pairs of upstream-downstream gauging stations within the STCW: for each pair, the magnitude of DC was estimated using cross-correlation values of the two discharge timeseries, while the timing of DC was characterized using cross-correlation lags (in hours or days) to assess the delay of peak flows between upstream and downstream stations. LiDAR data was also used to extract topographic information on: i) the location of runoff-generating areas (i.e., upper-, mid-, low- slope and riparian areas), ii) the area and depth of surface depressional storage basins, and iii) the total length of flow conveyance features (defined streams, all flow paths) in the incremental catchment area between upstream and downstream gauging stations. The computed discharge cross-correlation values indicate that the magnitude of DC is highest in spring, followed by fall then

  16. HCV genotyping from NGS short reads and its application in genotype detection from HCV mixed infected plasma.

    Science.gov (United States)

    Qiu, Ping; Stevens, Richard; Wei, Bo; Lahser, Fred; Howe, Anita Y M; Klappenbach, Joel A; Marton, Matthew J

    2015-01-01

    Genotyping of hepatitis C virus (HCV) plays an important role in the treatment of HCV. As new genotype-specific treatment options become available, it has become increasingly important to have accurate HCV genotype and subtype information to ensure that the most appropriate treatment regimen is selected. Most current genotyping methods are unable to detect mixed genotypes from two or more HCV infections. Next generation sequencing (NGS) allows for rapid and low cost mass sequencing of viral genomes and provides an opportunity to probe the viral population from a single host. In this paper, the possibility of using short NGS reads for direct HCV genotyping without genome assembly was evaluated. We surveyed the publicly-available genetic content of three HCV drug target regions (NS3, NS5A, NS5B) in terms of whether these genes contained genotype-specific regions that could predict genotype. Six genotypes and 38 subtypes were included in this study. An automated phylogenetic analysis based HCV genotyping method was implemented and used to assess different HCV target gene regions. Candidate regions of 250-bp each were found for all three genes that have enough genetic information to predict HCV genotypes/subtypes. Validation using public datasets shows 100% genotyping accuracy. To test whether these 250-bp regions were sufficient to identify mixed genotypes, we developed a random primer-based method to sequence HCV plasma samples containing mixtures of two HCV genotypes in different ratios. We were able to determine the genotypes without ambiguity and to quantify the ratio of the abundances of the mixed genotypes in the samples. These data provide a proof-of-concept that this random primed, NGS-based short-read genotyping approach does not need prior information about the viral population and is capable of detecting mixed viral infection.

  17. HCV genotyping from NGS short reads and its application in genotype detection from HCV mixed infected plasma.

    Directory of Open Access Journals (Sweden)

    Ping Qiu

    Full Text Available Genotyping of hepatitis C virus (HCV plays an important role in the treatment of HCV. As new genotype-specific treatment options become available, it has become increasingly important to have accurate HCV genotype and subtype information to ensure that the most appropriate treatment regimen is selected. Most current genotyping methods are unable to detect mixed genotypes from two or more HCV infections. Next generation sequencing (NGS allows for rapid and low cost mass sequencing of viral genomes and provides an opportunity to probe the viral population from a single host. In this paper, the possibility of using short NGS reads for direct HCV genotyping without genome assembly was evaluated. We surveyed the publicly-available genetic content of three HCV drug target regions (NS3, NS5A, NS5B in terms of whether these genes contained genotype-specific regions that could predict genotype. Six genotypes and 38 subtypes were included in this study. An automated phylogenetic analysis based HCV genotyping method was implemented and used to assess different HCV target gene regions. Candidate regions of 250-bp each were found for all three genes that have enough genetic information to predict HCV genotypes/subtypes. Validation using public datasets shows 100% genotyping accuracy. To test whether these 250-bp regions were sufficient to identify mixed genotypes, we developed a random primer-based method to sequence HCV plasma samples containing mixtures of two HCV genotypes in different ratios. We were able to determine the genotypes without ambiguity and to quantify the ratio of the abundances of the mixed genotypes in the samples. These data provide a proof-of-concept that this random primed, NGS-based short-read genotyping approach does not need prior information about the viral population and is capable of detecting mixed viral infection.

  18. The application of enhanced conveyance calculations in flood prediction

    Energy Technology Data Exchange (ETDEWEB)

    Forbes, G.; Pender, G. [Glasgow Univ. (United Kingdom). Dept. of Civil Engineering

    2000-07-01

    Over the past twenty years extensive research has been conducted on overbank flow behaviour during river floods. When the main channel flow interacts with flood plain flow, secondary losses other than bed friction act to retard the flow. Traditional one-dimensional modelling tools commonly used in the UK, such as ISIS or HEC-RAS, currently take no account of these secondary losses In an attempt to establish the nature and significance of secondary losses the flood channel facility (FCF) was constructed at HR Wallingford in 1987. As a direct result of the meandering channel series B experiments the James and Wark Method (1992) was developed to predict stage discharge relationships. For a given water level, this method will calculate a value of discharge taking into account the secondary losses. The paper will report on the modification of the method to fit into the river modelling software ISIS. Within the ISIS framework the James and Wark Method is used to calculate conveyance. The aim is to produce a more accurate flood prediction tool than currently exists. The newly developed software has been tested on laboratory data and shown to be highly accurate in both stage discharge and water level prediction. The software has since been applied to natural rivers that have experienced significant flood events. The paper will illustrate the significance of applying flume based conveyance calculation methods at the field scale. (orig.)

  19. Information Width

    CERN Document Server

    Ratsaby, Joel

    2008-01-01

    Kolmogorov argued that the concept of information exists also in problems with no underlying stochastic model (as Shannon's information representation) for instance, the information contained in an algorithm or in the genome. He introduced a combinatorial notion of entropy and information $I(x:\\sy)$ conveyed by a binary string $x$ about the unknown value of a variable $\\sy$. The current paper poses the following questions: what is the relationship between the information conveyed by $x$ about $\\sy$ to the description complexity of $x$ ? is there a notion of cost of information ? are there limits on how efficient $x$ conveys information ? To answer these questions Kolmogorov's definition is extended and a new concept termed {\\em information width} which is similar to $n$-widths in approximation theory is introduced. Information of any input source, e.g., sample-based, general side-information or a hybrid of both can be evaluated by a single common formula. An application to the space of binary functions is con...

  20. Can out-of-context musical sounds convey meaning? An ERP study on the processing of meaning in music.

    Science.gov (United States)

    Painter, Julia Grieser; Koelsch, Stefan

    2011-05-01

    There has been much debate over whether music can convey extra-musical meaning. The experiments presented here investigated whether low level musical features, specifically the timbre of a sound, have a direct access route to meaningful representations. Short musical sounds with varying timbres were investigated with regard to their ability to elicit meaningful associations, and the neural mechanisms underlying the meaningful processing of sounds were compared to those underlying the semantic processing of words. Two EEG experiments were carried out, and N400 effects were found for sound and word targets following sound and word primes in a semantic relatedness judgment task. No N400 effects were found in a memory task. The results show that even short musical sounds outside of a musical context are capable of conveying meaning information, but that sounds require more elaborate processing than other kinds of meaningful stimuli.

  1. ANALYSIS OF NONLINEAR DYNAMIC STABILITY OF LIQUID-CONVEYING PIPES

    Institute of Scientific and Technical Information of China (English)

    张立翔; 黄文虎

    2002-01-01

    Nonlinearly dynamic stability of flexible liquid-conveying pipe in fluid structure interaction was analyzed by using modal disassembling technique. The effects of Poisson,Junction and Friction couplings in the wave-flowing-vibration system on the pipe dynamic stability were included in the analytical model constituted by four nonlinear differential equations. An analyzing example of cantilevered pipe was done to illustrate the dynamic stability characteristics of the pipe in the full coupling mechanisms, and the phase curves related to the first four modal motions were drawn. The results show that the dynamic stable characteristics of the pipe are very complicated in the complete coupling mechanisms, and the kinds of the singularity points corresponding to the various modal motions are different.

  2. Transformer-4 version 2.0.1, a free multi-platform software to quickly reformat genotype matrices of any marker type, and archive them in the Demiurge information system.

    Science.gov (United States)

    Caujapé-Castells, Juli; Sabbagh, Izzat; Castellano, José J; Ramos, Rafael; Henríquez, Víctor; Quintana, Francisco M; Medina, Dailos A; Toledo, Javier; Ramírez, Fernando; Rodríguez, Juan F

    2013-05-01

    Transformer-4 version 2.0.1 (T4) is a multi-platform freeware programmed in java that can transform a genotype matrix in Excel or XML format into the input formats of one or several of the most commonly used population genetic software, for any possible combination of the populations that the matrix contains. T4 also allows the users to (i) draw allozyme gel interpretations for any number of diploid individuals, and then generate a genotype matrix ready to be used by T4; and (ii) produce basic reports about the data in the matrices. Furthermore, T4 is the only way to optionally submit 'genetic diversity digests' for publication in the Demiurge online information system (http://www.demiurge-project.org). Each such digest undergoes peer-review, and it consists of a geo-referenced data matrix in the tfm4 format plus any ancillary document or hyperlink that the digest authors see fit to include. The complementarity between T4 and Demiurge facilitates a free, safe, permanent, and standardized data archival and analysis system for researchers, and may also be a convenient resource for scientific journals, public administrations, or higher educators. T4 and its converters are freely available (at, respectively, http://www.demiurge-project.org/download_t4 and http://www.demiurge-project.org/converterstore) upon registration in the Demiurge information system (http://demiurge-project.org/register). Users have to click on the link provided on an account validation email, and accept Demiurge's terms of use (see http://www.demiurge-project.org/termsofuse). A thorough user's guide is available within T4. A 3-min promotional video about T4 and Demiurge can be seen at http://vimeo.com/29828406.

  3. Transcriptomic responses to environmental temperature by turtles with temperature-dependent and genotypic sex determination assessed by RNAseq inform the genetic architecture of embryonic gonadal development.

    Science.gov (United States)

    Radhakrishnan, Srihari; Literman, Robert; Neuwald, Jennifer; Severin, Andrew; Valenzuela, Nicole

    2017-01-01

    Vertebrate sexual fate is decided primarily by the individual's genotype (GSD), by the environmental temperature during development (TSD), or both. Turtles exhibit TSD and GSD, making them ideal to study the evolution of sex determination. Here we analyze temperature-specific gonadal transcriptomes (RNA-sequencing validated by qPCR) of painted turtles (Chrysemys picta TSD) before and during the thermosensitive period, and at equivalent stages in soft-shell turtles (Apalone spinifera-GSD), to test whether TSD's and GSD's transcriptional circuitry is identical but deployed differently between mechanisms. Our data show that most elements of the mammalian urogenital network are active during turtle gonadogenesis, but their transcription is generally more thermoresponsive in TSD than GSD, and concordant with their sex-specific function in mammals [e.g., upregulation of Amh, Ar, Esr1, Fog2, Gata4, Igf1r, Insr, and Lhx9 at male-producing temperature, and of β-catenin, Foxl2, Aromatase (Cyp19a1), Fst, Nf-kb, Crabp2 at female-producing temperature in Chrysemys]. Notably, antagonistic elements in gonadogenesis (e.g., β-catenin and Insr) were thermosensitive only in TSD early-embryos. Cirbp showed warm-temperature upregulation in both turtles disputing its purported key TSD role. Genes that may convert thermal inputs into sex-specific development (e.g., signaling and hormonal pathways, RNA-binding and heat-shock) were differentially regulated. Jak-Stat, Nf-κB, retinoic-acid, Wnt, and Mapk-signaling (not Akt and Ras-signaling) potentially mediate TSD thermosensitivity. Numerous species-specific ncRNAs (including Xist) were differentially-expressed, mostly upregulated at colder temperatures, as were unannotated loci that constitute novel TSD candidates. Cirbp showed warm-temperature upregulation in both turtles. Consistent transcription between turtles and alligator revealed putatively-critical reptilian TSD elements for male (Sf1, Amh, Amhr2) and female (Crabp2 and Hspb1

  4. MARKETING WESTERN WATER: CAN A PROCESS BASED GEOGRAPHIC INFORMATION SYSTEM IMPROVE REALLOCATION DECISIONS? (R828070)

    Science.gov (United States)

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  5. MARKETING WESTERN WATER: CAN A PROCESS BASED GEOGRAPHIC INFORMATION SYSTEM IMPROVE REALLOCATION DECISIONS? (R828070)

    Science.gov (United States)

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  6. 6 HCV genotyping 9G test and its comparison with VERSANT HCV genotype 2.0 assay (LiPA) for the hepatitis C virus genotyping.

    Science.gov (United States)

    Chantratita, Wasun; Song, Keum-Soo; GunHo, Choi; Pongthanapisith, Viroj; Thongbaiphet, Nipa; Wongtabtim, Garanyuta; Pasomsub, Ekawat; Angkanavin, Kanokwan; Nimse, Satish Balasaheb; Sonawane, Mukesh Digambar; Warkad, Shrikant Dasharath; Kim, Taisun

    2017-01-01

    In this article, we describe the 6 HCV Genotyping 9G test and its evaluation by using clinical samples and plasmid DNA standards. In tests with 981 plasmid DNA standards, the 6 HCV Genotyping 9G test showed higher than 92.5% sensitivity and 99.4% specificity. The 6 HCV Genotyping 9G test was compared with the VERSANT HCV Genotype 2.0 assay (LiPA 2.0) for detection and discrimination of HCV genotypes in clinical samples. The results of both tests were verified by genomic sequencing. The 6 HCV Genotyping 9G test demonstrated a 100% agreement with the sequencing results, which was higher than LiPA 2.0. These results indicate that the 6 HCV Genotyping 9G test can be a reliable, sensitive, and accurate diagnostic tool for the correct identification of HCV genotypes in clinical specimens. 6 HCV Genotyping 9G test can genotype six HCV types in 1 PCR in 30min after PCR amplification. The 6 HCV Genotyping 9G test, thus provide critical information to physicians and assist them to apply accurate drug regimen for the effective hepatitis C treatment.

  7. Influence of gravity on flutter of cantilevered pipes conveying fluid

    Science.gov (United States)

    Rivero, Javier; Perez-Saborid, Miguel

    2012-11-01

    We have considered the dynamics of the nonlinear interaction between a flexible pipe and the conveyed fluid in the presence of gravity. The stability of the system (fllutter and buckling) depends on parameters such as the dimensionless fluid flow rate, the gravity to bending stiffness ratio and the fluid to pipe mass ratio and it has been studied in detail both numerically and experimentally. It has also been found that the stabilizing or destabilizing effects of fluid flow depends crucially on the direction of gravity respect to the undeformed midline of the pipe. We have also computed the post-critical behavior of the system by solving the full nonlinear equations of the problem and analyzed the transfer of energy within the system in the nonlinear regime. We have formulated the problem in terms of the angles of the midline of the pipe instead of its transverse displacements, so that we can deal with large deflections without recurring to the quasi-linear approximations concerning the pipe curvature usually made in the literature. Supported by the Ministerio de Educación, Cultura y Deportes of Spain under grant DPI 2010-20450 C03-02.

  8. Genomic disorders: molecular mechanisms for rearrangements and conveyed phenotypes.

    Directory of Open Access Journals (Sweden)

    James R Lupski

    2005-12-01

    Full Text Available Rearrangements of our genome can be responsible for inherited as well as sporadic traits. The analyses of chromosome breakpoints in the proximal short arm of Chromosome 17 (17p reveal nonallelic homologous recombination (NAHR as a major mechanism for recurrent rearrangements whereas nonhomologous end-joining (NHEJ can be responsible for many of the nonrecurrent rearrangements. Genome architectural features consisting of low-copy repeats (LCRs, or segmental duplications, can stimulate and mediate NAHR, and there are hotspots for the crossovers within the LCRs. Rearrangements introduce variation into our genome for selection to act upon and as such serve an evolutionary function analogous to base pair changes. Genomic rearrangements may cause Mendelian diseases, produce complex traits such as behaviors, or represent benign polymorphic changes. The mechanisms by which rearrangements convey phenotypes are diverse and include gene dosage, gene interruption, generation of a fusion gene, position effects, unmasking of recessive coding region mutations (single nucleotide polymorphisms, SNPs, in coding DNA or other functional SNPs, and perhaps by effects on transvection.

  9. APOE Genotyping, Cardiovascular Disease

    Science.gov (United States)

    ... Home Visit Global Sites Search Help? APOE Genotyping, Cardiovascular Disease Share this page: Was this page helpful? Also ... of choice to decrease the risk of developing cardiovascular disease (CVD) . However, there is a wide variability in ...

  10. 9 CFR 50.13 - Disinfection of premises, conveyances, and materials.

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Disinfection of premises, conveyances... ANIMALS DESTROYED BECAUSE OF TUBERCULOSIS General Indemnity § 50.13 Disinfection of premises, conveyances... for disinfection to 30 days when request for such extension is received by him prior to the expiration...

  11. 9 CFR 53.7 - Disinfection of premises, conveyances, and materials.

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Disinfection of premises, conveyances... LIVESTOCK OR POULTRY § 53.7 Disinfection of premises, conveyances, and materials. All premises, including... disinfection shall be shared according to the agreement reached under § 53.2 with the State in which the work...

  12. 9 CFR 52.7 - Disinfection of premises, conveyances, and materials.

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Disinfection of premises, conveyances... SWINE DESTROYED BECAUSE OF PSEUDORABIES § 52.7 Disinfection of premises, conveyances, and materials. All... cleaning and disinfection, unless an official pseudorabies epidemiologist determines that a shorter or...

  13. 48 CFR 1227.305-4 - Conveyance of invention rights acquired by the Government.

    Science.gov (United States)

    2010-10-01

    ... 48 Federal Acquisition Regulations System 5 2010-10-01 2010-10-01 false Conveyance of invention... Under Government Contracts 1227.305-4 Conveyance of invention rights acquired by the Government... inventions made in the course of contract performance and at contract completion. This requirement may be...

  14. 48 CFR 3027.305-4 - Conveyance of invention rights acquired by the Government.

    Science.gov (United States)

    2010-10-01

    ... 48 Federal Acquisition Regulations System 7 2010-10-01 2010-10-01 false Conveyance of invention... PATENTS, DATA, AND COPYRIGHTS Patent Rights under Government Contracts 3027.305-4 Conveyance of invention... which include a patent rights clause include a means for the contractor to report inventions made in the...

  15. 48 CFR 3053.227-70 - Conveyance of invention rights acquired by the Government.

    Science.gov (United States)

    2010-10-01

    ... 48 Federal Acquisition Regulations System 7 2010-10-01 2010-10-01 false Conveyance of invention... Prescription of Forms 3053.227-70 Conveyance of invention rights acquired by the Government. The following form is prescribed for including a means for contractors to report inventions made in the course of...

  16. 28 CFR 0.69b - Delegation of authority respecting conveyances for public airports.

    Science.gov (United States)

    2010-07-01

    ... conveyances for public airports. 0.69b Section 0.69b Judicial Administration DEPARTMENT OF JUSTICE... authority respecting conveyances for public airports. The Assistant Attorney General in charge of the...(b) of The Airport and Airway Improvement Act of 1982 (96 Stat. 671, 692) with respect to...

  17. 27 CFR 24.91 - Conveyance of untaxpaid wine or spirits.

    Science.gov (United States)

    2010-04-01

    ... wine or spirits. 24.91 Section 24.91 Alcohol, Tobacco Products and Firearms ALCOHOL AND TOBACCO TAX AND TRADE BUREAU, DEPARTMENT OF THE TREASURY LIQUORS WINE Administrative and Miscellaneous Provisions Conveyance of Wine Or Spirits on Wine Premises § 24.91 Conveyance of untaxpaid wine or spirits....

  18. 7 CFR 1955.10 - Voluntary conveyance of real property by the borrower to the Government.

    Science.gov (United States)

    2010-01-01

    ... will submit the voluntary conveyance offer, the case file and a narrative report to the appropriate... on present income and potential earning ability. Exception for SFH loans: FmHA or its successor... with the effective date being the date the voluntary conveyance is closed. If an oral lease is in...

  19. 9 CFR 73.11 - Treatment of means of conveyance and premises having contained scabby cattle.

    Science.gov (United States)

    2010-01-01

    ... premises having contained scabby cattle. 73.11 Section 73.11 Animals and Animal Products ANIMAL AND PLANT... POULTRY) AND ANIMAL PRODUCTS SCABIES IN CATTLE § 73.11 Treatment of means of conveyance and premises having contained scabby cattle. Means of conveyance, yards, pens, sheds, chutes, or other premises...

  20. 78 FR 40168 - Notice of Realty Action: Classification for Lease and Subsequent Conveyance for Recreation and...

    Science.gov (United States)

    2013-07-03

    ...: 14X5232] Notice of Realty Action: Classification for Lease and Subsequent Conveyance for Recreation and... suitable for classification for lease and subsequent conveyance under the provisions of the Recreation and...: Interested parties may submit written comments regarding the proposed classification of the land for...

  1. 75 FR 26790 - Notice of Realty Action: Classification for Lease and Subsequent Conveyance for the Recreation...

    Science.gov (United States)

    2010-05-12

    ...: Classification for Lease and Subsequent Conveyance for the Recreation and Public Purposes Act of Public Lands in...: The Bureau of Land Management (BLM) has examined and found suitable for classification for lease and...: Interested parties may submit written comments regarding the proposed lease/conveyance or classification...

  2. 78 FR 75577 - Notice of Realty Action: Recreation and Public Purposes Act Classification; Lease and Conveyance...

    Science.gov (United States)

    2013-12-12

    ... found suitable for classification for lease and/or conveyance to the City of Las Cruces under the... Bureau of Land Management Notice of Realty Action: Recreation and Public Purposes Act Classification; Lease and Conveyance of Public Land, Do a Ana County, NM AGENCY: Bureau of Land Management,...

  3. 75 FR 28282 - Notice of Realty Action; Recreation and Public Purposes Act Classification; Lease and Conveyance...

    Science.gov (United States)

    2010-05-20

    ... written comments regarding the proposed classification and lease or conveyance of this public land on or... will not be available for lease or conveyance until after the classification becomes effective... Bureau of Land Management Notice of Realty Action; Recreation and Public Purposes Act...

  4. CENTRAL CONVEYING & AUTO FEEDING SYSTEMS FOR AN INJECTION MOLDING SHOP

    Directory of Open Access Journals (Sweden)

    Sanjeev Kumar

    2011-08-01

    Full Text Available Nowadays injection molding is probably the most important method of Processing of consumer and industrial goods, and is performed everywhere in the world. The developing of injection molding becomes a competition from day to day. This Process now integrated with computer control make the production better in quality and Better quantity. The trends of producing a plastics product in injection molding industries are recently changing from traditional method to using the FEA analysis. For injection molding industries, time and cost is very important aspects to consider because these two aspectswill directly related to the profits at a company. The next issue toconsider, to get the best parameter for the injection molding process, plastics has been waste. Through the experiment, operator will use large amount of plastics material to get the possibly parameters to setup the machine.To produce the parts with better quality and quantity these molding defects are the major obstacles in achieving the targets with quality & quantity. Various defects like Short shot, colour streaks and low productivity rates are associated with the material mixing and feeding as molded plastics are often a blend of two or more materials. Colors (master batch and other additives are often mixed (blended with the raw plastic material prior to the molding process in molding plants. So it is very necessary to work out auto blending and auto feeding of plasticgranules to the machine hopper. This paper will cover the studyof automatic blending unit & central conveying system for plasticgranule feeding to machine & will help in optimizing the injection molding process.

  5. Citrus tristeza virus: Evolution of Complex and Varied Genotypic Groups

    Science.gov (United States)

    Harper, S. J.

    2013-01-01

    Amongst the Closteroviridae, Citrus tristeza virus (CTV) is almost unique in possessing a number of distinct and characterized strains, isolates of which produce a wide range of phenotype combinations among its different hosts. There is little understanding to connect genotypes to phenotypes, and to complicate matters more, these genotypes are found throughout the world as members of mixed populations within a single host plant. There is essentially no understanding of how combinations of genotypes affect symptom expression and disease severity. We know little about the evolution of the genotypes that have been characterized to date, little about the biological role of their diversity and particularly, about the effects of recombination. Additionally, genotype grouping has not been standardized. In this study we utilized an extensive array of CTV genomic information to classify the major genotypes, and to determine the major evolutionary processes that led to their formation and subsequent retention. Our analyses suggest that three major processes act on these genotypes: (1) ancestral diversification of the major CTV lineages, followed by (2) conservation and co-evolution of the major functional domains within, though not between CTV genotypes, and (3) extensive recombination between lineages that have given rise to new genotypes that have subsequently been retained within the global population. The effects of genotype diversity and host-interaction are discussed, as is a proposal for standardizing the classification of existing and novel CTV genotypes. PMID:23630519

  6. Genotypic diversity of root and shoot characteristics of

    Directory of Open Access Journals (Sweden)

    ali ganjali

    2009-06-01

    Full Text Available Root and shoot characteristics of chickpea (Cicer arietinum L. genotypes are believed to be important in drought tolerance. There is a little information about the response of genotypes root growth in hydroponics and greenhouse culture, also the relationships between root size and drought tolerance. This study was conducted to observe whether genotypes differ in root size, and to see that root size is associated with drought tolerance during early vegetative growth. We found significant differences (p0.01 in root dry weight, total root length, tap root length, root area, leaf dry weight, leaf area and shoot biomass per plant among 30 genotypes of chickpea grown in hydroponics culture for three weeks. Each of these parameters correlated with all others, positively. Among 30 genotypes, 10 genotypes with different root sizes were selected and were grown in a greenhouse in sand culture experiment under drought stress (FC %30 for three weeks. There were not linear or non-linear significant correlations between root characters in hydroponics and greenhouse environments. It seems that environmental factors are dominant on genetic factors in seedling stage and so, the expression of genotypics potential for root growth characteristics of genotypes are different in hydroponic and greenhouse conditions. In this study, the selection of genotypes with vigorous roots system in hydroponic condition did not lead to genotypes with the same root characters in greenhouse environment. The genotype×drought interactions for root characters of chickpea seedlings in 30 days were not significant (p

  7. RESEARCH OF DEPENDENCE OF BELT CONVEYER DRIVE POWER ON ITS DESIGN PARAMETERS

    Directory of Open Access Journals (Sweden)

    V. M. Bohomaz

    2016-02-01

    Full Text Available Purpose. A drive is one of the basic elements of belt conveyers. To determine the drive power it is necessary to conduct calculations by standard methodologies expounded in modern technical literature. Such calculations demand a fair amount of time. The basic design parameters of a belt conveyer include type of load, design efficiency, geometrical dimensions and path configuration, operation conditions. The article aims to build the parametric dependence of belt conveyer drive power on its design parameters, that takes into account standard dimensions and parameters of belts, idlers and pulleys. Methodology. The work examines a belt conveyer with two areas: sloping and horizontal. Using the methodology for pulling calculation by means of belt conveyer encirclement, there are built parametric dependences of pull forces in the characteristic conveyer path points on the type of load, design efficiency, geometrical dimensions and path configuration, operation conditions. Findings. For the belt conveyers of the considered type there are built parametric dependences of drive power on type of load, design efficiency, geometrical dimensions and path configuration, operation conditions, taking into account the belt standard dimensions and corresponding assumptions in relation to idler and pulley types. Originality.This is the first developed parametric dependence of two-area (sloping and horizontal belt conveyer drive power on type of load, design efficiency, geometrical dimensions and path configuration, operation conditions that takes into account standard dimensions and parameters of belts, idlers and pulleys. Practical value. Use of the built drive power dependences on design parameters for the belt conveyers with sloping and horizontal areas gives an opportunity of relatively rapid determination of drive power approximate value at the design stage. Also it allows quality selection of its basic elements at specific design characteristics and

  8. Social information

    Directory of Open Access Journals (Sweden)

    Luiz Fernando de Barros Campos

    Full Text Available Based on Erving Goffman's work, the article aims to discuss a definition of information centered on the type conveyed by individuals in a multimodal way, encompassing language and body in situations of co-presence, where face-to-face interaction occurs, and influencing inter-subjective formation of the self. Six types of information are highlighted: material information, expressive information, ritualized information, meta-information, strategic information, and information displays. It is argued that the construction of this empirical object tends to dissolve the tension among material, cognitive and pragmatic aspects, constituting an example of the necessary integration among them. Some vulnerable characteristics of the theory are critically mentioned and it is suggested that the concept of information displays could provide a platform to approach the question of the interaction order in its relations with the institutional and social orders, and consequently, to reassess the scope of the notion of social information analyzed.

  9. Axiom turkey genotyping array

    Science.gov (United States)

    The Axiom®Turkey Genotyping Array interrogates 643,845 probesets on the array, covering 643,845 SNPs. The array development was led by Dr. Julie Long of the USDA-ARS Beltsville Agricultural Research Center under a public-private partnership with Hendrix Genetics, Aviagen, and Affymetrix. The Turk...

  10. (Brassica napus L.) genotypes

    African Journals Online (AJOL)

    STORAGESEVER

    2009-10-05

    Oct 5, 2009 ... The genetic diversity and relationships among rapeseed genotypes were ... dent of environment and plant growth stage, unlimited ..... interactions that lead to the expression of particular traits .... thesis, Faculty of Agriculture, University of Novi Sad. ... in the U.S. hard red winter wheat cultivars as reveled by.

  11. 78 FR 57412 - Notice of Realty Action: Recreation and Public Purposes Act Classification and Lease/Conveyance...

    Science.gov (United States)

    2013-09-18

    ... classification for lease and subsequent conveyance to the City of Durango, under the provisions of the Recreation... proposed classification for lease and subsequent conveyance until November 4, 2013. ADDRESSES: Please... classification and lease with subsequent conveyance under the provisions of the R&PP Act, as amended (43...

  12. Foveating dynamic scenes based on expert's eye movements to convey perceptual skills

    NARCIS (Netherlands)

    Jarodzka, Halszka; Balslev, Thomas; Holmqvist, Kenneth; Nyström, Marcus; Scheiter, Katharina; Gerjets, Peter; Eika, Berit

    2011-01-01

    Jarodzka, H., Balslev, T., Holmqvist, K., Scheiter, K., Nyström, M., Gerjets, P., & Eika, B. (2011, August). Foveating dynamic scenes based on expert’s eye movements to convey perceptual skills. Presentation at ECEM, Marseille, France.

  13. Foveating dynamic scenes based on expert's eye movements to convey perceptual skills

    NARCIS (Netherlands)

    Jarodzka, Halszka; Balslev, Thomas; Holmqvist, Kenneth; Nyström, Marcus; Scheiter, Katharina; Gerjets, Peter; Eika, Berit

    2011-01-01

    Jarodzka, H., Balslev, T., Holmqvist, K., Scheiter, K., Nyström, M., Gerjets, P., & Eika, B. (2011, August). Foveating dynamic scenes based on expert’s eye movements to convey perceptual skills. Presentation at ECEM, Marseille, France.

  14. Computational fluid dynamics modeling of rope-guided conveyances in two typical kinds of shaft layouts.

    Directory of Open Access Journals (Sweden)

    Renyuan Wu

    Full Text Available The behavior of rope-guided conveyances is so complicated that the rope-guided hoisting system hasn't been understood thoroughly so far. In this paper, with user-defined functions loaded, ANSYS FLUENT 14.5 was employed to simulate lateral motion of rope-guided conveyances in two typical kinds of shaft layouts. With rope-guided mine elevator and mine cages taken into account, results show that the lateral aerodynamic buffeting force is much larger than the Coriolis force, and the side aerodynamic force have the same order of magnitude as the Coriolis force. The lateral aerodynamic buffeting forces should also be considered especially when the conveyance moves along the ventilation air direction. The simulation shows that the closer size of the conveyances can weaken the transverse aerodynamic buffeting effect.

  15. Geographic distribution of hepatitis C virus genotypes in Brazil

    Directory of Open Access Journals (Sweden)

    Campiotto S.

    2005-01-01

    Full Text Available Brazil is a country of continental dimension with a population of different ethnic backgrounds. Thus, a wide variation in the frequencies of hepatitis C virus (HCV genotypes is expected to occur. To address this point, 1,688 sequential samples from chronic HCV patients were analyzed. HCV-RNA was amplified by the RT-PCR from blood samples collected from 1995 to 2000 at different laboratories located in different cities from all Brazilian States. Samples were collected in tubes containing a gel separator, centrifuged in the site of collection and sent by express mail in a refrigerated container to Laboratório Bioquímico Jardim Paulista, São Paulo, SP, Brazil. HCV- RNA was extracted from serum and submitted to RT and nested PCR using standard procedures. Nested PCR products were submitted to cycle sequencing reactions without prior purification. Sequences were analyzed for genotype determination and the following frequencies were found: 64.9% (1,095 for genotype 1, 4.6% (78 for genotype 2, 30.2% (510 for genotype 3, 0.2% (3 for genotype 4, and 0.1% (2 for genotype 5. The frequencies of HCV genotypes were statistically different among Brazilian regions (P = 0.00017. In all regions, genotype 1 was the most frequent (51.7 to 74.1%, reaching the highest value in the North; genotype 2 was more prevalent in the Center-West region (11.4%, especially in Mato Grosso State (25.8%, while genotype 3 was more common in the South (43.2%. Genotypes 4 and 5 were rarely found and only in the Southeast, in São Paulo State. The present data indicate the need for careful epidemiological surveys throughout Brazil since knowing the frequency and distribution of the genotypes would provide key information for understanding the spread of HCV.

  16. An Exploratory Study of Gambling Operators' Use of Social Media and the Latent Messages Conveyed.

    Science.gov (United States)

    Gainsbury, Sally M; Delfabbro, Paul; King, Daniel L; Hing, Nerilee

    2016-03-01

    Advertisements for gambling products have historically been restricted due to their potential to normalize gambling and contribute to excessive gambling behaviours among vulnerable populations. However, social media enables gambling operators to promote products and brands with fewer constraints than in traditional forms of media. This study investigated how social media is used by gambling operators to promote gambling activities including an analysis of the latent messages that are conveyed. A representative sample of major land-based and online gambling venues and operators, including casinos, clubs, hotels, lottery and wagering operators (n = 101), was obtained. Websites and social media profiles of gambling operators were audited to investigate the types of social media used, content of promotions, and prevalence of responsible gambling messaging. The results showed that Facebook and Twitter were the dominant platforms used, most commonly by casinos and online wagering operators. A key finding was that online gambling operators included gambling content in conjunction with related news and events, as well as unrelated content, as way of normalizing gambling within a broader social context. Unlike land-based gambling promotions, responsible gambling information tended not to feature in operators' posts and profiles. The key messages propagated in social media gambling promotions were positively framed, and tended to encourage gambling using a range of cross-promotional tactics to emphasize the winning aspect of gambling. The implications of freely accessible and pervasive gambling promotions via social media are discussed with respect to the general community as well as vulnerable populations.

  17. Genotyping of Coxiella burnetii from domestic ruminants in northern Spain

    Directory of Open Access Journals (Sweden)

    Astobiza Ianire

    2012-12-01

    Full Text Available Abstract Background Information on the genotypic diversity of Coxiella burnetii isolates from infected domestic ruminants in Spain is limited. The aim of this study was to identify the C. burnetii genotypes infecting livestock in Northern Spain and compare them to other European genotypes. A commercial real-time PCR targeting the IS1111a insertion element was used to detect the presence of C. burnetii DNA in domestic ruminants from Spain. Genotypes were determined by a 6-loci Multiple Locus Variable number tandem repeat analysis (MLVA panel and Multispacer Sequence Typing (MST. Results A total of 45 samples from 4 goat herds (placentas, N = 4, 12 dairy cattle herds (vaginal mucus, individual milk, bulk tank milk, aerosols, N = 20 and 5 sheep flocks (placenta, vaginal swabs, faeces, air samples, dust, N = 21 were included in the study. Samples from goats and sheep were obtained from herds which had suffered abortions suspected to be caused by C. burnetii, whereas cattle samples were obtained from animals with reproductive problems compatible with C. burnetii infection, or consisted of bulk tank milk (BTM samples from a Q fever surveillance programme. C. burnetii genotypes identified in ruminants from Spain were compared to those detected in other countries. Three MLVA genotypes were found in 4 goat farms, 7 MLVA genotypes were identified in 12 cattle herds and 4 MLVA genotypes were identified in 5 sheep flocks. Clustering of the MLVA genotypes using the minimum spanning tree method showed a high degree of genetic similarity between most MLVA genotypes. Overall 11 different MLVA genotypes were obtained corresponding to 4 different MST genotypes: MST genotype 13, identified in goat, sheep and cattle from Spain; MST genotype 18, only identified in goats; and, MST genotypes 8 and 20, identified in small ruminants and cattle, respectively. All these genotypes had been previously identified in animal and human clinical samples from several

  18. Fluid control in microfluidic devices using a fluid conveyance extension and an absorbent microfluidic flow modulator.

    Science.gov (United States)

    Yuen, Po Ki

    2013-05-07

    This article presents a simple method for controlling fluid in microfluidic devices without the need for valves or pumps. A fluid conveyance extension is fluidly coupled to the enclosed outlet chamber of a microfluidic device. After a fluid is introduced into the microfluidic device and saturates the fluid conveyance extension, a fluid flow in the microfluidic device is generated by contacting an absorbent microfluidic flow modulator with the fluid conveyance extension to absorb the fluid from the fluid conveyance extension through capillary action. Since the fluid in the microfluidic device is fluidly coupled with the fluid conveyance extension and the fluid conveyance extension is fluidly coupled with the absorbent microfluidic flow modulator, the absorption rate of the absorbent microfluidic flow modulator, which is the rate at which the absorbent microfluidic flow modulator absorbs fluid, matches the fluid flow rate in the microfluidic device. Thus, the fluid flow rate in the microfluidic device is set by the absorption rate of the absorbent microfluidic flow modulator. Sheath flow and fluid switching applications are demonstrated using this simple fluid control method without the need for valves or pumps. Also, the ability to control the fluid flow rate in the microfluidic device is demonstrated using absorbent microfluidic flow modulators with various absorbent characteristics and dimensions.

  19. Braking Distance of Hoist Conveyances Required for Safe Stopping Under the Conditions of Emergency Braking

    Science.gov (United States)

    Wolny, Stanisław

    2017-06-01

    This study investigates selected aspects of the dynamic behaviour of mine hoists during the emergency braking in an event of overtravel. Characteristics of the braking force that needs to be applied in the headgear and in the pit bottom to arrest the conveyance in the event of an overtravel are derived from laboratory and industrial test data and recalling the results reported in literature. The real hoist installation is replaced by a model whereby the equations of motion of rope elements are written as for elastic strings, taking into account the variable length of the hoisting rope section between the Koepe pulley and the conveyance being arrested in the head tower. Analytical formulas are provided whereby the displacement of the top conveyance with the payload for the constant elasticity coefficient of the hoisting rope section between the conveyance being arrested in the head tower and the Koepe pulley is expressed as the function of the braking force and of the operational parameters of the hoist gear. The hoist operation is investigated in the event of emergency braking, taking into account the two aspects of the cycle: - the time required for the conveyance to be stopped, - the distance travelled by the conveyance until it is stopped. The results of the dynamic analysis of the hoist installation in the conditions of emergency braking may be utilised in selection of the effective and adequate braking system guaranteeing the safety of the system operation.

  20. Information

    CERN Document Server

    Ritchie, L David

    1991-01-01

    This volume thoroughly covers the sub-field of information, and is one of the first in a series which synthesizes the research literature on major concepts in the field of communication. Each concise volume includes a research definition (concept explication) and presents a state-of-the-art analysis of theory and empirical findings related to the concept. After defining the word `information', the author contrasts non-linear and reflexive ideas about human communication with linear perspectives. Information is equated with uncertainty. The result presents a pattern for the process of conceptua

  1. An Application of Molecular Genotyping in Mice

    Directory of Open Access Journals (Sweden)

    Underkoffler Lara A.

    2003-01-01

    Full Text Available Microsatellite markers are simple sequence repeats within the mammalian genome that can be used for identifying disease loci, mapping genes of interest as well as studying segregation patterns related to meiotic nondisjunction. Different strains of mice have variable CA repeat lengths and PCR based methods can be used to identify them, thus allowing for specific genotypes to be assigned. Molecular genotyping offers such identification at any developmental stage, which allows for a broad range of anomalies to be studied. We studied chromosomal segregation in relation to nondisjunction in early-gestation mouse embryos using molecular genotyping. Information on the parental origin as well as the number of chromosomes a given progeny carried was obtained in our analysis.

  2. Hepatitis C Virus Genotypes

    Directory of Open Access Journals (Sweden)

    Kayhan Azadmanesh

    2005-09-01

    the ultimate source of the virus's genetic diversity. HCV circulates as a heterogeneous population of genetically different but closely related genomes known as the quasispecies(15.As only 30-35% of nucleotides actually differ, there is obviously considerable heterogeneity in evolutionary rates among nucleotide sites in the genome. This heterogeneity is the result of variable evolutionary constraints. The 5'-UTR contains extensive secondary RNA structure and is correspondingly the slowest evolving genomic region(16. The next slowest region is the C (Core gene, which evolves three times faster than the 5'- UTR. The envelope genes E1 and E2 constitute the most diverse genome region and evolve about nine times faster than the 5'-UTR(16, probably as a result of their presumed role in evading the host immune response. Genomic Heterogeneity and ClassificationSystemsShortly after its discovery in 1989, it became clear that HCV had substantial nucleotide sequence diversity, with only 66 to 80% overall sequencesimilarity among strains belonging to different genotypes or subtypes(17. HCV isolates show four levels of genomic variations: types, subtypes, isolates, andquasispecies. The overall sequence similarities over complete genomic sequences are at least 91% within quasispecies, approximately 79% (range, 77 to 80% between subtypes, and about 68% (range, 66 to 69% between different types. This quasispecies is composed of a group of heterogeneous RNA sequences centered around a dominant nucleotide sequence that changes, throughout the course of the infection, under the selective pressure of the host immune system(18. More than one genotype can be found in the circulations of some HCV-infected patients, particularly in individuals who have received multiple transfusions and intravenous drug users. These are referred to as mixed-genotype infections(19, 20.The lack of a routinely available cell culture system and an easily available animal model has rendered classification of HCV

  3. INVESTIGATING DRAINAGE DENSITY AND FRACTAL DIMENSION AS GEOMORPHOMETRIC INDICATORS OF TIDAL MARSH CONDITION USING REMOTELY SENSED DATA AND GEOGRAPHICAL INFORMATION SYSTEMS. (R828677C003)

    Science.gov (United States)

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  4. RISK ESTIMATION AND VALUE-OF-INFORMATION ANALYSES FOR THREE PROPOSED GENETIC SCREENING PROGRAMS FOR CHRONIC BERYLLIUM DISEASE PREVENTION. (R825173)

    Science.gov (United States)

    The perspectives, information and conclusions conveyed in research project abstracts, progress reports, final reports, journal abstracts and journal publications convey the viewpoints of the principal investigator and may not represent the views and policies of ORD and EPA. Concl...

  5. SNP genotyping technologies

    DEFF Research Database (Denmark)

    Studer, Bruno; Kölliker, Roland

    2013-01-01

    for this is the availability of high-throughput platforms for multiplexed SNP genotyping. Advancements in these technologies have enabled increased flexibility and throughput, allowing for the generation of adequate SNP marker data at very competitive cost per data point.......In the recent years, single nucleotide polymorphism (SNP) markers have emerged as the marker technology of choice for plant genetics and breeding applications. Besides the efficient technologies available for SNP discovery even in complex genomes, one of the main reasons...

  6. SNP genotyping technologies

    DEFF Research Database (Denmark)

    Studer, Bruno; Kölliker, Roland

    2013-01-01

    In the recent years, single nucleotide polymorphism (SNP) markers have emerged as the marker technology of choice for plant genetics and breeding applications. Besides the efficient technologies available for SNP discovery even in complex genomes, one of the main reasons...... for this is the availability of high-throughput platforms for multiplexed SNP genotyping. Advancements in these technologies have enabled increased flexibility and throughput, allowing for the generation of adequate SNP marker data at very competitive cost per data point....

  7. EDM的信息传递与设计%EDM Information Convey and Design

    Institute of Scientific and Technical Information of China (English)

    陈宇琰

    2006-01-01

    电子邮件广告(EDM)作为一种新兴的网络营销手段,得到越来越广泛的应用.EDM设计具有网络媒体特有的互动性,同时也具有平面性、广告性以及时效性等特点,遵循这些特性,EDM的设计也存在一定的基本设计规律,掌握这些要点,可以帮助设计师更好地实现顺畅的信息传递与沟通.

  8. The Message Conveyed By IFRS-Compliant Information: A South African Perspective

    National Research Council Canada - National Science Library

    Pieter van der Zwan; Nico van der Merwe

    2013-01-01

    ...) or other reporting standards modelled on IFRS. Literature suggests that the complexity of IFRS, which stems from detailed rules-based principles in these standards, may harm the ability of users of financial statements to understand financial...

  9. Functional identification of central afferent projections conveying information of acute "stress" to the hypothalamic paraventricular nucleus

    DEFF Research Database (Denmark)

    Larsen, P.J.; Mikkelsen, J.D.

    1995-01-01

    c-fos, corticotropin-releasing factor, neurosecretory neurons, paraventricular nucleus, transcription factors, neuroendocrinology, cholera toxin subunit B, retrograde tracing......c-fos, corticotropin-releasing factor, neurosecretory neurons, paraventricular nucleus, transcription factors, neuroendocrinology, cholera toxin subunit B, retrograde tracing...

  10. Genotype versus phenotype in families with androgen insensitivity syndrome

    NARCIS (Netherlands)

    Boehmer, ALM; Bruggenwirth, H; Van Assendelft, C; Otten, BJ; Verleun-Mooijman, MCT; Niermeijer, MF; Brunner, HG; Rouwe, CW; Waelkens, JJ; Oostdijk, W; Kleijer, WJ; Van der Kwast, TH; De Vroede, MA; Drop, SLS

    2001-01-01

    Androgen insensitivity syndrome encompasses a wide range of phenotypes, which are caused by numerous different mutations in the AR gene. Detailed information on the genotype/ phenotype relationship in androgen insensitivity syndrome is important for sex assignment, treatment of androgen insensitivit

  11. relationship of status of polymorphic rapd bands with genotypic ...

    African Journals Online (AJOL)

    jen

    The nine primers produced 60 amplification products, of which 9 were monomorphic and 51 were polymorphic. The ... Key Words: Eleusine coracana, genotypic adaptation, molecular markers .... Table 2 presents detailed information about the.

  12. Innovations in Population Education: Conveying Population Education through Games.

    Science.gov (United States)

    Villanueva, Carmelita L., Ed.

    1987-01-01

    The use of games and simulations is a method that educators are finding especially useful in presenting information about population concerns. The "Futures Wheels" is a participatory classroom exercise, designed to demonstrate probable consequences of future population increases and is also used to illustrate a wide range of population related…

  13. Genomic Variants Revealed by Invariably Missing Genotypes in Nelore Cattle.

    Directory of Open Access Journals (Sweden)

    Joaquim Manoel da Silva

    Full Text Available High density genotyping panels have been used in a wide range of applications. From population genetics to genome-wide association studies, this technology still offers the lowest cost and the most consistent solution for generating SNP data. However, in spite of the application, part of the generated data is always discarded from final datasets based on quality control criteria used to remove unreliable markers. Some discarded data consists of markers that failed to generate genotypes, labeled as missing genotypes. A subset of missing genotypes that occur in the whole population under study may be caused by technical issues but can also be explained by the presence of genomic variations that are in the vicinity of the assayed SNP and that prevent genotyping probes from annealing. The latter case may contain relevant information because these missing genotypes might be used to identify population-specific genomic variants. In order to assess which case is more prevalent, we used Illumina HD Bovine chip genotypes from 1,709 Nelore (Bos indicus samples. We found 3,200 missing genotypes among the whole population. NGS re-sequencing data from 8 sires were used to verify the presence of genomic variations within their flanking regions in 81.56% of these missing genotypes. Furthermore, we discovered 3,300 novel SNPs/Indels, 31% of which are located in genes that may affect traits of importance for the genetic improvement of cattle production.

  14. Test plan for the remote conveyance and innovative end effector demonstration

    Energy Technology Data Exchange (ETDEWEB)

    Rice, P.; Smith, A.M. [EG& G Idaho, Inc., Idaho Falls, ID (United States). Idaho National Engineering Lab.; Peterson, R.

    1994-08-01

    This test plan describes the demonstration of innovative equipment and processes specifically designed to be superior to currently employed technology for buried waste retrieval. The dumping of dry soil into a funnel/dumpster arrangement has been found to be the primary mechanism for dust generation during the retrieval of buried transuranic waste. The primary goal of the innovative end effector is to reduce dust generation and the potential spread of airborne contaminants during the dumping operation. In addition, regardless of the excavation technique, exhumed waste will have to be conveyed away from the retrieval area to a packaging area or directly to a treatment facility. The remote conveyance system is aimed at developing a remotely controlled vehicle to convey retrieved waste that will operate on variable terrain and remove workers from the hazardous zone. To demonstrate the remote conveyance system and the innovative end effector, the Buried Waste Integrated Demonstration (BWID) Program has subcontracted with RAHCO International to provide equipment and services to perform a demonstration of the technologies. The demonstration will be performed in two phases. In Phase I, the subcontractor will perform a full scale demonstration to assess the ability of the innovative end effector to control dust generation and the potential spread of contamination during dumping operations. Phase II includes performing a retrieval/conveyance demonstration. This demonstration will excavate, dump, and convey simulated waste to demonstrate the functionality of the system (e.g., maneuverability, retrieval rates, and system integration). Phase II of the demonstration will include all elements of the remote conveyance and end effector system. This test plan will describe the demonstration objectives, data quality objectives, equipment operation, and methods for collecting data during the demonstration.

  15. Transverse vibration of pipe conveying fluid made of functionally graded materials using a symplectic method

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Zhong-Min, E-mail: wangzhongm@xaut.edu.cn; Liu, Yan-Zhuang

    2016-03-15

    Highlights: • We investigate the transverse vibration of FGM pipe conveying fluid. • The FGM pipe conveying fluid can be classified into two cases. • The variations between the frequency and the power law exponent are obtained. • “Case 1” is relatively more reasonable than “case 2”. - Abstract: Problems related to the transverse vibration of pipe conveying fluid made of functionally graded material (FGM) are addressed. Based on inside and outside surface material compositions of the pipe, FGM pipe conveying fluid can be classified into two cases. It is hypothesized that the physical parameters of the material along the direction of the pipe wall thickness change in the simple power law. A differential equation of motion expressed in non-dimensional quantities is derived by using Hamilton's principle for systems of changing mass. Using the assuming modal method, the pipe deflection function is expanded into a series, in which each term is expressed to admissible function multiplied by generalized coordinate. Then, the differential equation of motion is discretized into the two order differential equations expressed in the generalized coordinates. Based on symplectic elastic theory and the introduction of dual system and dual variable, Hamilton's dual equations are derived, and the original problem is reduced to eigenvalue and eigenvector problem in the symplectic space. Finally, a symplectic method is employed to analyze the vibration and stability of FGM pipe conveying fluid. For a clamped–clamped FGM pipe conveying fluid in “case 1” and “case 2”, the dimensionless critical flow velocity for first-mode divergence and the critical coupled-mode flutter flow velocity are obtained, and the variations between the real part and imaginary part of dimensionless complex frequency and fluid velocity, mass ratio and the power law exponent (or graded index, volume fraction) for FGM pipe conveying fluid are analyzed.

  16. Choosing tree genotypes for phytoremediation of landfill leachate using phyto-recurrent selection

    Science.gov (United States)

    Jill A. Zalesny; Ronald S., Jr. Zalesny; Adam H. Wiese; Richard B. Hall

    2007-01-01

    Information about the response of poplar (Populus spp.) genotypes to landfill leachate irrigation is needed, along with efficient methods for choosing genotypes based on leachate composition. Poplar clones were irrigated during three cycles of phyto-recurrent selection to test whether genotypes responded differently to leachate and water, and to test...

  17. Susceptibility of biallelic haplotype and genotype frequencies to genotyping error.

    Science.gov (United States)

    Moskvina, Valentina; Schmidt, Karl Michael

    2006-12-01

    With the availability of fast genotyping methods and genomic databases, the search for statistical association of single nucleotide polymorphisms with a complex trait has become an important methodology in medical genetics. However, even fairly rare errors occurring during the genotyping process can lead to spurious association results and decrease in statistical power. We develop a systematic approach to study how genotyping errors change the genotype distribution in a sample. The general M-marker case is reduced to that of a single-marker locus by recognizing the underlying tensor-product structure of the error matrix. Both method and general conclusions apply to the general error model; we give detailed results for allele-based errors of size depending both on the marker locus and the allele present. Multiple errors are treated in terms of the associated diffusion process on the space of genotype distributions. We find that certain genotype and haplotype distributions remain unchanged under genotyping errors, and that genotyping errors generally render the distribution more similar to the stable one. In case-control association studies, this will lead to loss of statistical power for nondifferential genotyping errors and increase in type I error for differential genotyping errors. Moreover, we show that allele-based genotyping errors do not disturb Hardy-Weinberg equilibrium in the genotype distribution. In this setting we also identify maximally affected distributions. As they correspond to situations with rare alleles and marker loci in high linkage disequilibrium, careful checking for genotyping errors is advisable when significant association based on such alleles/haplotypes is observed in association studies.

  18. Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias

    Directory of Open Access Journals (Sweden)

    Didion John P

    2012-01-01

    Full Text Available Abstract Background High-density genotyping arrays that measure hybridization of genomic DNA fragments to allele-specific oligonucleotide probes are widely used to genotype single nucleotide polymorphisms (SNPs in genetic studies, including human genome-wide association studies. Hybridization intensities are converted to genotype calls by clustering algorithms that assign each sample to a genotype class at each SNP. Data for SNP probes that do not conform to the expected pattern of clustering are often discarded, contributing to ascertainment bias and resulting in lost information - as much as 50% in a recent genome-wide association study in dogs. Results We identified atypical patterns of hybridization intensities that were highly reproducible and demonstrated that these patterns represent genetic variants that were not accounted for in the design of the array platform. We characterized variable intensity oligonucleotide (VINO probes that display such patterns and are found in all hybridization-based genotyping platforms, including those developed for human, dog, cattle, and mouse. When recognized and properly interpreted, VINOs recovered a substantial fraction of discarded probes and counteracted SNP ascertainment bias. We developed software (MouseDivGeno that identifies VINOs and improves the accuracy of genotype calling. MouseDivGeno produced highly concordant genotype calls when compared with other methods but it uniquely identified more than 786000 VINOs in 351 mouse samples. We used whole-genome sequence from 14 mouse strains to confirm the presence of novel variants explaining 28000 VINOs in those strains. We also identified VINOs in human HapMap 3 samples, many of which were specific to an African population. Incorporating VINOs in phylogenetic analyses substantially improved the accuracy of a Mus species tree and local haplotype assignment in laboratory mouse strains. Conclusion The problems of ascertainment bias and missing

  19. Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias.

    Science.gov (United States)

    Didion, John P; Yang, Hyuna; Sheppard, Keith; Fu, Chen-Ping; McMillan, Leonard; de Villena, Fernando Pardo-Manuel; Churchill, Gary A

    2012-01-19

    High-density genotyping arrays that measure hybridization of genomic DNA fragments to allele-specific oligonucleotide probes are widely used to genotype single nucleotide polymorphisms (SNPs) in genetic studies, including human genome-wide association studies. Hybridization intensities are converted to genotype calls by clustering algorithms that assign each sample to a genotype class at each SNP. Data for SNP probes that do not conform to the expected pattern of clustering are often discarded, contributing to ascertainment bias and resulting in lost information - as much as 50% in a recent genome-wide association study in dogs. We identified atypical patterns of hybridization intensities that were highly reproducible and demonstrated that these patterns represent genetic variants that were not accounted for in the design of the array platform. We characterized variable intensity oligonucleotide (VINO) probes that display such patterns and are found in all hybridization-based genotyping platforms, including those developed for human, dog, cattle, and mouse. When recognized and properly interpreted, VINOs recovered a substantial fraction of discarded probes and counteracted SNP ascertainment bias. We developed software (MouseDivGeno) that identifies VINOs and improves the accuracy of genotype calling. MouseDivGeno produced highly concordant genotype calls when compared with other methods but it uniquely identified more than 786000 VINOs in 351 mouse samples. We used whole-genome sequence from 14 mouse strains to confirm the presence of novel variants explaining 28000 VINOs in those strains. We also identified VINOs in human HapMap 3 samples, many of which were specific to an African population. Incorporating VINOs in phylogenetic analyses substantially improved the accuracy of a Mus species tree and local haplotype assignment in laboratory mouse strains. The problems of ascertainment bias and missing information due to genotyping errors are widely recognized as

  20. Structural knowledge techniques for representing, conveying, and acquiring structural knowledge

    CERN Document Server

    Jonassen, David H; Beissner, Katherine; Yacci, Michael

    2013-01-01

    This book introduces the concept of a hypothetical type of knowledge construction -- referred to as structural knowledge -- that goes beyond traditional forms of information recall to provide the bases for knowledge application. Assuming that the validity of the concept is accepted, the volume functions as a handbook for supporting the assessment and use of structural knowledge in learning and instructional settings. It's descriptions are direct and short, and its structure is consistent. Almost all of the chapters describe a technique for representing and assessing structural knowledge acquis

  1. Object Conveyance Algorithm for Multiple Mobile Robots based on Object Shape and Size

    Directory of Open Access Journals (Sweden)

    Purnomo Sejati

    2016-05-01

    Full Text Available This paper describes a determination method of a number of a team for multiple mobile robot object conveyance. The number of robot on multiple mobile robot systems is the factor of complexity on robots formation and motion control. In our previous research, we verified the use of the complex-valued neural network for controlling multiple mobile robots in object conveyance problem. Though it is a significant issue to develop effective determination team member for multiple mobile robot object conveyance, few studies have been done on it. Therefore, we propose an algorithm for determining the number of the team member on multiple mobile robot object conveyance with grasping push. The team member is determined based on object weight to obtain appropriate formation. First, the object shape and size measurement is carried out by a surveyor robot that approaches and surrounds the object. During surrounding the object, the surveyor robot measures its distance to the object and records for estimating the object shape and size. Since the object shape and size are estimated, the surveyor robot makes initial push position on the estimated push point and calls additional robots for cooperative push. The algorithm is validated in several computer simulations with varying object shape and size. As a result, the proposed algorithm is promising for minimizing the number of the robot on multiple mobile robot object conveyance.

  2. STABILITY ANALYSIS OF MAXWELL VISCOELASTIC PIPES CONVEYING FLUID WITH BOTH ENDS SIMPLY SUPPORTED

    Institute of Scientific and Technical Information of China (English)

    赵凤群; 王忠民; 冯振宇; 刘宏昭

    2001-01-01

    On the basis of some studies of elastic pipe conveying fluid, the dynamic behavior and stability of Maxwell viscoelastic pipes conveying fluid with both ends simply supported, which are gyroscopic conservative system, were investigated by using the finite difference method and the corresponding recurrence formula. The effect of relaxation time of viscoelastic materials on the variation curve between dimensionless flow velocity and the real part and imaginary part of dimensionless complex frequencies in the first-three-order modes were analyzed concretely. It is found that critical flow velocities of divergence instability of Maxwell viscoelastic pipes conveying fluid with both ends simply supported decrease with the decrease of the relaxation time, while after the onset of divergence instability(buckling)critical flow velocities of coupled-mode flutter increase with the decrease of the relaxation time. Particularly, in the case of greater mass ratio, with the decrease of relaxation time,the onset of coupled-mode flutter delays, and even does not take place. When the relaxation time is greater than 103 , stability behavior of viscoelastic pipes conveying fluid is almost similar to the elastic pipes conveying fluid.

  3. The HBV E Genotype Discover in Dai Nationality in Xishuangbanna, Yunnan Province

    Institute of Scientific and Technical Information of China (English)

    Hai-ping ZHAO; Yuan-ying SHEN; Ru SHEN; Yuan-yi WANG; Mei-ya FU

    2009-01-01

    To investigate the distribution of Hepatitis B virus (HBV) genotypes among the population of Dai nationality in Xishuangbanna, Yurman Province HBV genotypes of the Serum samples were tested by PCR-RFLP. This is the first time to discover the B+E genotypes in China. This finding provides new information for understanding the distribution of HBV genotype in China and a provides a basis for establishing a Chinese gene bank.

  4. Independent Auditor’s Report: Messages Conveyed and Implications

    Directory of Open Access Journals (Sweden)

    Saher Aqel

    2014-10-01

    Full Text Available Auditing plays a crucial role in the business environment by providing assurance services to the public so as to decrease information risk by increasing the reliability of financial information provided by the business entities. As the final product of the audit, the audit report is a way by which the auditor communicates with the public the findings of the audit process. The auditor‟s report is the only aspect of the work of auditor that can be available to the public. Thus, users are likely to assess the auditor‟s professionalism and competence by this report. The purpose of this study is to address the meaning and implication of the audit report in addition to a discussion of the messages perceived from the auditor‟s report. Differences in perceptions of the meaning of the auditor‟s report may exist between the auditors and users. Users may misperceive the nature and scope of the audit function and the level of assurance when they read the audit report

  5. Effect of reference population size and available ancestor genotypes on imputation of Mexican Holstein genotypes

    Science.gov (United States)

    The effects of reference population size and the availability of information from genotyped ancestors on the accuracy of imputation of single nucleotide polymorphisms (SNPs) were investigated for Mexican Holstein cattle. Three scenarios for reference population size were examined: (1) a local popula...

  6. 新型高效杆件运送装置及方法%New Type Efficient Rod Piece Conveyer and Conveying Method

    Institute of Scientific and Technical Information of China (English)

    杨衍亮; 赖永萍; 汤韬

    2013-01-01

    设计了一种圆形杆件的运送装置,该装置主要由一个特殊材料制造的圆锥体状导向器和内力紧固系统构成,利用普通机械传动力拖拽,可使之在地面滑行。圆锥体状导向器遇到地面障碍时能自动滑过,杆件也随之绕行。该装置不受地形影响,能过沟、坎、河流,综合效率可提高30倍以上,有效解决了交通困难地区大型杆件的运输问题。%A round rod piece conveyer is designed, which is composed of a cone-shaped director made of special material and internal force of fastening system. It can slide on the ground with ordinary mechanical driving force. The cone director can slide around the ground obstacle and the rod piece follows it around. Not affected by terrain, this conveyer can pass ditches, ridges and rivers. The comprehensive efficiency can be improved by 30 times, and the rod piece conveying problem in areas where there is transportation difficulty is effectively solved.

  7. HCV prevalence and predominant genotype in IV drug users

    Directory of Open Access Journals (Sweden)

    Asad Andalibalshohada

    2014-07-01

    Full Text Available Hepatitis C virus (HCV causes 308000 deaths due to liver cancer and 758000 deaths due to cirrhosis every year. Almost 170 million people have HCV infection around the world. Information regarding this virus helps us to determine the prevalence of other hepatitis C genotypes in population, especially in intravenous drug users. It is assumed that some genotypes are more common in certain areas or groups of people. A recent study strongly confirms the central role of injecting network traits, not only as a transmission factor but also as a predictor of HCV genotype and phylogenetic determination in different communities. Hepatitis C genotypes and subtypes have different prevalence considering the country. Risk factors such as transfusion, hemodialysis, root of acquisition and etc, are detected in intravenous drug users. Several conducted studies have investigated the prevalence, risk factors, and predominance of HCV genotypes infection in different parts of Iran.

  8. THE DYNAMIC BEHAVIORS OF VISCOELASTIC PIPE CONVEYING FLUID WITH THE KELVIN MODEL

    Institute of Scientific and Technical Information of China (English)

    Wang Zhongmin; Zhao Fengqun; Feng Zhenyu; Liu Hongzhao

    2000-01-01

    Based on the differential constitutive relationship of linear viscoelastic material, a solid-liquid coupling vibration equation for viscoelastic pipe conveying fluid is derived by the D'Alembert's principle. The critical flow velocities and natural frequencies of the cantilever pipe conveying fluid with the Kelvin model ( flutter instability) are calculated with the modified finite difference method in the form of the recurrence for mula. The curves between the complex frequencies of the first, second and third mode and flow velocity of the pipe are plotted. On the basis of the numerical calculation results, the dynamic behaviors and stability of the pipe are discussed. It should be pointed out that the delay time of viscoelastic material with the Kelvin model has a remarkable effect on the dynamic characteristics and stability behaviors of the cantilevered pipe conveying fluid, which is a gyroscopic non-conservative system.

  9. Research on design system of band conveyer driven by linear friction

    Institute of Scientific and Technical Information of China (English)

    JIA Chang-xi; HE Mei-rong

    2009-01-01

    The band conveyer driven by linear friction is a new device. It can reduce drive size and conveyor belt tensity, and increase delivery capacity. It has feasibility and usability particularly in altering the original conveyer and solving the problems of capacity insufficiency. The technology has brought certain difficulty for engineers, because it has certain difficulty both in theory and in calculation. Therefore, Visual Basic 6.0 programming technology was used to develop a set of "the design system of the band conveyer driven by linear friction." After being proved in the field, it can completely meet the demands of the design. This paper introduced its main theory or basis in design, so as to provide related technical support to this kind of project.

  10. Simulation of horizontal slug-flow pneumatic conveying with kinetic theory

    Institute of Scientific and Technical Information of China (English)

    GU Zhengmeng; GUO Liejin

    2007-01-01

    Wavelike slug-flow is a representative flow type in horizontal pneumatic conveying.Kinetic theory was introduced to establish a 3D kinetic numerical model for wavelike slug gas-solid flow in this paper.Wavelike motion of particulate slugs in horizontal pipes was numerically investigated.The formation and motion process of slugs and settled layer were simulated.The characteristics of the flow,such as pressure drop,air velocity distribution,slug length and settled layer thickness,and the detailed changing characteristics of slug length and settled layer thickness with air velocity were obtained.The results indicate that kinetic theory can represent the physical characteristics of the non-suspension dense phase flow of wavelike slug pneumatic conveying.The experiment in this paper introduced a new idea for the numerical calculation of slug-flow pneumatic conveying.

  11. Low-velocity pneumatic conveying in horizontal pipe for coarse particles and fine powders

    Institute of Scientific and Technical Information of China (English)

    Yuji Tomita; Vijay Kumar Agarwal; Hiroyuki Asou; Katsuya Funatsu

    2008-01-01

    First,the characteristics of low-velocity conveying of particles having different hardness are experimentally investigated in a horizontal pipeline in terms of flow pattern and pressure drop to show that the slug flow can be classified into two types depending on the settling of particles along the pipeline,and the period is small for slug flow without the settled layer,which is called solitary slug flow.The pressure drop for soft particles is shown to be larger than that for hard particles.Then,experimental results are presented on horizontal fluidized-bed conveying of fine powders to show that air release from the top surface of the conveying channel is an important factor for high mass flow rate of particles.

  12. Visible Genotype Sensor Array

    Directory of Open Access Journals (Sweden)

    Takashi Imai

    2008-04-01

    Full Text Available A visible sensor array system for simultaneous multiple SNP genotyping has been developed using a new plastic base with specific surface chemistry. Discrimination of SNP alleles is carried out by an allele-specific extension reaction using immobilized oligonucleotide primers. The 3’-ends of oligonucleotide primers are modified with a locked nucleic acid to enhance their efficiency in allelic discrimination. Biotin-dUTPs included in the reaction mixture are selectively incorporated into extending primer sequences and are utilized as tags for alkaline phosphatase-mediated precipitation of colored chemical substrates onto the surface of the plastic base. The visible precipitates allow immediate inspection of typing results by the naked eye and easy recording by a digital camera equipped on a commercial mobile phone. Up to four individuals can be analyzed on a single sensor array and multiple sensor arrays can be handled in a single operation. All of the reactions can be performed within one hour using conventional laboratory instruments. This visible genotype sensor array is suitable for “focused genomics” that follows “comprehensive genomics”.

  13. Information

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    There are unstructured abstracts (no more than 256 words) and structured abstracts (no more than 480). The specific requirements for structured abstracts are as follows:An informative, structured abstracts of no more than 4-80 words should accompany each manuscript. Abstracts for original contributions should be structured into the following sections. AIM (no more than 20 words): Only the purpose should be included. Please write the aim as the form of "To investigate/ study/..."; MATERIALS AND METHODS (no more than 140 words); RESULTS (no more than 294 words): You should present P values where appropnate and must provide relevant data to illustrate how they were obtained, e.g. 6.92 ± 3.86 vs 3.61 ± 1.67, P< 0.001; CONCLUSION (no more than 26 words).

  14. Conveying Communicative Intent: Moves and Metadiscourse in Abstract Writing

    Directory of Open Access Journals (Sweden)

    Chuah Ek Lon

    2012-11-01

    Full Text Available Abstracts form the first reading contact of extended discourse in pursuance of a meaningful engagement with a report. An abstract possesses distinct features drawn from a specific genre of academic writing that communicates its discourse intent to any academic or professional community. Among the discourse conventions is the use of a move pattern and metadiscourse elements which together, establishes logical connections with the reader. This paper investigates good communication practice in abstract writing, a significant preliminary that fronts a report. The effectiveness of an abstract specifically, can be tied to the realization of a peculiar move structure that is accompanied by a judicious choice of words and phrases that relates to and involves the reader both interactively and interactionally. A content analysis of the move structure and its underlying metadiscourse in 100 randomly selected abstracts gives petite indication of how students manage abstract writing in a technical report. The results will have a bearing on situating appropriate pedagogical approaches for the teaching of a salient feature in academic writing and will also inform students of related genre expectations towards abstract writing. It is a skill that they may not have sufficient contact with in their university writing experience, though, nonetheless, one that needs to be accomplished to fulfill communicative intent that serves both local and international purposes insofar as academic writing is concerned. Keywords: abstract, metadiscourse, rhetorical moves and genre

  15. Conveying Flood Hazard Risk Through Spatial Modeling: A Case Study for Hurricane Sandy-Affected Communities in Northern New Jersey

    Science.gov (United States)

    Artigas, Francisco; Bosits, Stephanie; Kojak, Saleh; Elefante, Dominador; Pechmann, Ildiko

    2016-10-01

    The accurate forecast from Hurricane Sandy sea surge was the result of integrating the most sophisticated environmental monitoring technology available. This stands in contrast to the limited information and technology that exists at the community level to translate these forecasts into flood hazard levels on the ground at scales that are meaningful to property owners. Appropriately scaled maps with high levels of certainty can be effectively used to convey exposure to flood hazard at the community level. This paper explores the most basic analysis and data required to generate a relatively accurate flood hazard map to convey inundation risk due to sea surge. A Boolean overlay analysis of four input layers: elevation and slope derived from LiDAR data and distances from streams and catch basins derived from aerial photography and field reconnaissance were used to create a spatial model that explained 55 % of the extent and depth of the flood during Hurricane Sandy. When a ponding layer was added to the previous model to account for depressions that would fill and spill over to nearby areas, the new model explained almost 70 % of the extent and depth of the flood. The study concludes that fairly accurate maps can be created with readily available information and that it is possible to infer a great deal about risk of inundation at the property level, from flood hazard maps. The study goes on to conclude that local communities are encouraged to prepare for disasters, but in reality because of the existing Federal emergency management framework there is very little incentive to do so.

  16. Conveying Flood Hazard Risk Through Spatial Modeling: A Case Study for Hurricane Sandy-Affected Communities in Northern New Jersey.

    Science.gov (United States)

    Artigas, Francisco; Bosits, Stephanie; Kojak, Saleh; Elefante, Dominador; Pechmann, Ildiko

    2016-10-01

    The accurate forecast from Hurricane Sandy sea surge was the result of integrating the most sophisticated environmental monitoring technology available. This stands in contrast to the limited information and technology that exists at the community level to translate these forecasts into flood hazard levels on the ground at scales that are meaningful to property owners. Appropriately scaled maps with high levels of certainty can be effectively used to convey exposure to flood hazard at the community level. This paper explores the most basic analysis and data required to generate a relatively accurate flood hazard map to convey inundation risk due to sea surge. A Boolean overlay analysis of four input layers: elevation and slope derived from LiDAR data and distances from streams and catch basins derived from aerial photography and field reconnaissance were used to create a spatial model that explained 55 % of the extent and depth of the flood during Hurricane Sandy. When a ponding layer was added to the previous model to account for depressions that would fill and spill over to nearby areas, the new model explained almost 70 % of the extent and depth of the flood. The study concludes that fairly accurate maps can be created with readily available information and that it is possible to infer a great deal about risk of inundation at the property level, from flood hazard maps. The study goes on to conclude that local communities are encouraged to prepare for disasters, but in reality because of the existing Federal emergency management framework there is very little incentive to do so.

  17. 9 CFR 327.8 - Import products; equipment and means of conveyance used in handling to be maintained in sanitary...

    Science.gov (United States)

    2010-01-01

    ... and Animal Products FOOD SAFETY AND INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE AGENCY ORGANIZATION... other means of conveyance transporting any product to the United States, and all trucks, chutes...

  18. Biotyping and genotyping (MLVA16 of Brucella abortus isolated from cattle in Brazil, 1977 to 2008.

    Directory of Open Access Journals (Sweden)

    Sílvia Minharro

    Full Text Available Brucellosis is a worldwide distributed zoonosis that causes important economic losses to animal production. In Brazil, information on the distribution of biovars and genotypes of Brucella spp. is scarce or unavailable. This study aimed (i to biotype and genotype 137 Brazilian cattle isolates (from 1977 to 2008 of B. abortus and (ii to analyze their distribution. B. abortus biovars 1, 2 and 3 (subgroup 3b were confirmed and biovars 4 and 6 were first described in Brazil. Genotyping by the panel 1 revealed two groups, one clustering around genotype 40 and another around genotype 28. Panels 2A and 2B disclosed a high diversity among Brazilian B. abortus strains. Eighty-nine genotypes were found by MLVA16. MLVA16 panel 1 and 2 showed geographic clustering of some genotypes. Biotyping and MLVA16 genotyping of Brazilian B. abortus isolates were useful to better understand the epidemiology of bovine brucellosis in the region.

  19. Avian nephritis virus (ANV) on Brazilian chickens farms: circulating genotypes and intra-genotypic diversity.

    Science.gov (United States)

    Espinoza, Luis Luna; Beserra, Laila A R; Soares, Rodrigo M; Gregori, Fabio

    2016-12-01

    Avian nephritis virus (ANV), which belongs to the family Astroviridae, is associated with different clinical manifestations (including enteric disorders). Despite being frequently found in the avian industry worldwide, information regarding genetic features of these viruses in Brazil is scarce. Therefore, sixty fecal sample pools (5-6 birds of the same flock), representing 60 poultry farms from six Brazilian States, were screened using an astrovirus-specific hemi-nested-PCR assay targeting the conserved ORF1b gene, followed by nucleotide sequencing of amplified products. PCR and phylogenetic analysis confirmed the detection of 21 positive samples to ANV (35 %). In order to investigate the genetic diversity represented by these viruses, amplification, cloning and phylogenetic analysis of the deduced amino acid sequence of ORF2 gene were attempted. Eight samples were successfully cloned (generating 32 clones in total) and sequenced. Based on phylogenetic analysis of ORF2, sequences defined in this study were classified into three genotypes: genotype 5, which has already been described in birds, and two other novel genotypes, tentatively named genotype 8 and 9, all of which occurred in single or mixed infections. Moreover, high intra-genotypic diversity and co-circulation of distinct strains in a same host population were observed. This study revealed the presence of new strains of ANV in Brazilian poultry and their circulation in commercial chicken flocks.

  20. STR MARKERS. GENOTYPING APPLICATIONS

    Directory of Open Access Journals (Sweden)

    I. O. Sirbu

    2001-01-01

    Full Text Available STR (short tandem repeats loci consist of short, repetitive sequence elements of 2-8 bp in length. These abundant repeats are well distributed throughout the human genome and are rich source of highly polymorphic markers. There are literally hundreds of STR systems which have been mapped throughout the human genome. Several dozen have been investigated for application to human identity testing. These STR loci are found on almost every chromosome in the genome. They may be amplified using a variety of PCR primers. Tetranucleotide repeats have been most popular among forensic scientists due to their fidelity in PCR amplification although some tri- and pentanucleotide repeats are also in use. In this paper we intend (far from being exhaustive to present a synthesis of the characteristics of these genetic markers and their applications in genotyping, giving as an example the use of the STRs in a paternity testing case.

  1. Predictors of hepatitis B virus genotype and viraemia in HIV-infected patients with chronic hepatitis B in Europe

    DEFF Research Database (Denmark)

    Soriano, Vincent; Mocroft, Amanda; Peters, Lars

    2010-01-01

    Both natural history and treatment outcome of hepatitis B virus (HBV) infection are influenced by genotypes and viral load. Information about factors determining HBV genotype distribution and viraemia in HIV/HBV-co-infected patients is scarce.......Both natural history and treatment outcome of hepatitis B virus (HBV) infection are influenced by genotypes and viral load. Information about factors determining HBV genotype distribution and viraemia in HIV/HBV-co-infected patients is scarce....

  2. Predictors of hepatitis B virus genotype and viraemia in HIV-infected patients with chronic hepatitis B in Europe

    DEFF Research Database (Denmark)

    Soriano, Vincent; Mocroft, Amanda; Peters, Lars

    2010-01-01

    Both natural history and treatment outcome of hepatitis B virus (HBV) infection are influenced by genotypes and viral load. Information about factors determining HBV genotype distribution and viraemia in HIV/HBV-co-infected patients is scarce.......Both natural history and treatment outcome of hepatitis B virus (HBV) infection are influenced by genotypes and viral load. Information about factors determining HBV genotype distribution and viraemia in HIV/HBV-co-infected patients is scarce....

  3. 32 CFR 644.530 - Conditions in conveying land suspected of contamination.

    Science.gov (United States)

    2010-07-01

    ... contamination. 644.530 Section 644.530 National Defense Department of Defense (Continued) DEPARTMENT OF THE ARMY... Contamination from Proposed Excess Land and Improvements § 644.530 Conditions in conveying land suspected of contamination. The following conditions, appropriately modified to conform to local law, will be included...

  4. 9 CFR 51.8 - Disinfection of premises, conveyances, and materials.

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Disinfection of premises, conveyances... ANIMALS DESTROYED BECAUSE OF BRUCELLOSIS Indemnity for Cattle, Bison, and Swine § 51.8 Disinfection of... for disinfection to 30 days when request for such extension is received by him prior to the expiration...

  5. 9 CFR 55.4 - Disinfection of premises, conveyances, and materials.

    Science.gov (United States)

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Disinfection of premises, conveyances... CONTROL OF CHRONIC WASTING DISEASE Chronic Wasting Disease Indemnification Program § 55.4 Disinfection of... paid will be responsible for expenses incurred in connection with the cleaning and disinfection, except...

  6. Dynamic behavior of pipes conveying gas–liquid two-phase flow

    Energy Technology Data Exchange (ETDEWEB)

    An, Chen, E-mail: anchen@cup.edu.cn [Offshore Oil/Gas Research Center, China University of Petroleum-Beijing, Beijing 102249 (China); Su, Jian, E-mail: sujian@lasme.coppe.ufrj.br [Nuclear Engineering Program, COPPE, Universidade Federal do Rio de Janeiro, CP 68509, Rio de Janeiro 21941-972 (Brazil)

    2015-10-15

    Highlights: • Dynamic behavior of pipes conveying gas–liquid two-phase flow was analyzed. • The generalized integral transform technique (GITT) was applied. • Excellent convergence behavior and long-time stability were shown. • Effects of volumetric quality and volumetric flow rate on dynamic behavior were studied. • Normalized volumetric-flow-rate stability envelope of dynamic system was determined. - Abstract: In this paper, the dynamic behavior of pipes conveying gas–liquid two-phase flow was analytically and numerically investigated on the basis of the generalized integral transform technique (GITT). The use of the GITT approach in the analysis of the transverse vibration equation lead to a coupled system of second order differential equations in the dimensionless temporal variable. The Mathematica's built-in function, NDSolve, was employed to numerically solve the resulting transformed ODE system. The characteristics of gas–liquid two-phase flow were represented by a slip-ratio factor model that was devised and used for similar problems. Good convergence behavior of the proposed eigenfunction expansions is demonstrated for calculating the transverse displacement at various points of pipes conveying air–water two-phase flow. Parametric studies were performed to analyze the effects of the volumetric gas fraction and the volumetric flow rate on the dynamic behavior of pipes conveying air–water two-phase flow. Besides, the normalized volumetric-flow-rate stability envelope for the dynamic system was obtained.

  7. Finite element analysis of fluid-structure interaction in buried liquid-conveying pipeline

    Institute of Scientific and Technical Information of China (English)

    朱庆杰; 陈艳华; 刘廷权; 代兆立

    2008-01-01

    Long distance buried liquid-conveying pipeline is inevitable to cross faults and under earthquake action,it is necessary to calculate fluid-structure interaction(FSI) in finite element analysis under pipe-soil interaction.Under multi-action of site,fault movement and earthquake,finite element model of buried liquid-conveying pipeline for the calculation of fluid structure interaction was constructed through combinative application of ADINA-parasolid and ADINA-native modeling methods,and the direct computing method of two-way fluid-structure coupling was introduced.The methods of solid and fluid modeling were analyzed,pipe-soil friction was defined in solid model,and special flow assumption and fluid structure interface condition were defined in fluid model.Earthquake load,gravity and displacement of fault movement were applied,also model preferences.Finite element research on the damage of buried liquid-conveying pipeline was carried out through computing fluid-structure coupling.The influences of pipe-soil friction coefficient,fault-pipe angle,and liquid density on axial stress of pipeline were analyzed,and optimum parameters were proposed for the protection of buried liquid-conveying pipeline.

  8. Creating a comprehensive customer service program to help convey critical and acute results of radiology studies.

    Science.gov (United States)

    Towbin, Alexander J; Hall, Seth; Moskovitz, Jay; Johnson, Neil D; Donnelly, Lane F

    2011-01-01

    Communication of acute or critical results between the radiology department and referring clinicians has been a deficiency of many radiology departments. The failure to perform or document these communications can lead to poor patient care, patient safety issues, medical-legal issues, and complaints from referring clinicians. To mitigate these factors, a communication and documentation tool was created and incorporated into our departmental customer service program. This article will describe the implementation of a comprehensive customer service program in a hospital-based radiology department. A comprehensive customer service program was created in the radiology department. Customer service representatives were hired to answer the telephone calls to the radiology reading rooms and to help convey radiology results. The radiologists, referring clinicians, and customer service representatives were then linked via a novel workflow management system. This workflow management system provided tools to help facilitate the communication needs of each group. The number of studies with results conveyed was recorded from the implementation of the workflow management system. Between the implementation of the workflow management system on August 1, 2005, and June 1, 2009, 116,844 radiology results were conveyed to the referring clinicians and documented in the system. This accounts for more than 14% of the 828,516 radiology cases performed in this time frame. We have been successful in creating a comprehensive customer service program to convey and document communication of radiology results. This program has been widely used by the ordering clinicians as well as radiologists since its inception.

  9. Conveying clinical reasoning based on visual observation via eye-movement modelling examples

    NARCIS (Netherlands)

    Jarodzka, Halszka; Balslev, Thomas; Holmqvist, Kenneth; Nyström, Marcus; Scheiter, Katharina; Gerjets, Peter; Eika, Berit

    2012-01-01

    Jarodzka, H., Balslev, T., Holmqvist, K., Nyström, M., Scheiter, K., Gerjets, P., & Eika, B. (2012). Conveying clinical reasoning based on visual observation via eye-movement modelling examples. Instructional Science, 40(5), 813-827. doi:10.1007/s11251-012-9218-5

  10. 48 CFR 1253.227-70 - Conveyance of invention rights acquired by the Government.

    Science.gov (United States)

    2010-10-01

    ... 48 Federal Acquisition Regulations System 5 2010-10-01 2010-10-01 false Conveyance of invention... invention rights acquired by the Government. The following form is prescribed as a means for contractors to report inventions made in the course of contract performance, as specified in 1227.305-4: DD Form 882...

  11. Conveying a Biblical Worldview to Charter School Students: A Pilot Study

    Science.gov (United States)

    Barke, Steve

    2014-01-01

    This doctoral project is a pilot study to assess the effectiveness of a church discipleship co-op designed to convey a biblical worldview to middle and high school students enrolled in charter homeschooling in Southern California. Research by the Nehemiah Institute indicated that 90% of Christian families in the United States send their children…

  12. Conveying clinical reasoning based on visual observation via eye-movement modelling examples

    NARCIS (Netherlands)

    Jarodzka, Halszka; Balslev, Thomas; Holmqvist, Kenneth; Nyström, Marcus; Scheiter, Katharina; Gerjets, Peter; Eika, Berit

    2012-01-01

    Jarodzka, H., Balslev, T., Holmqvist, K., Nyström, M., Scheiter, K., Gerjets, P., & Eika, B. (2012). Conveying clinical reasoning based on visual observation via eye-movement modelling examples. Instructional Science, 40(5), 813-827. doi:10.1007/s11251-012-9218-5

  13. Using Menelaus' Theorem and Dynamic Mathematics Software to Convey the Meanings of Indeterminate Forms to Students

    Science.gov (United States)

    Çekmez, Erdem

    2016-01-01

    This study investigates the effectiveness of a teaching activity that aimed to convey the meaning of indeterminate forms to a group of undergraduate students who were enrolled in an elementary mathematics education programme. The study reports the implementation sequence of the activity and students' experiences in the classroom. To assess the…

  14. Phase shift effects for fluid conveying pipes with non-ideal supports

    DEFF Research Database (Denmark)

    Dahl, Jonas; Thomsen, Jon Juel

    2008-01-01

    Vibrations of a fluid-conveying pipe with non-ideal supports are investigated with respect to phase shift effects. A numerical Galerkin approach is developed for this general problem, and the use of it exemplified with a investigation of phase shift effects from rotational damping at supports...

  15. The Semiotic Structure of Geometry Diagrams: How Textbook Diagrams Convey Meaning

    Science.gov (United States)

    Dimmel, Justin K.; Herbst, Patricio G.

    2015-01-01

    Geometry diagrams use the visual features of specific drawn objects to convey meaning about generic mathematical entities. We examine the semiotic structure of these visual features in two parts. One, we conduct a semiotic inquiry to conceptualize geometry diagrams as mathematical texts that comprise choices from different semiotic systems. Two,…

  16. 33 CFR 211.78 - Maintenance and conveyance of access roads.

    Science.gov (United States)

    2010-07-01

    ... of Engineers or the Director of Civil Works (Assistant to the Chief of Engineers for Civil Works) as... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false Maintenance and conveyance of... ARMY, DEPARTMENT OF DEFENSE REAL ESTATE ACTIVITIES OF THE CORPS OF ENGINEERS IN CONNECTION WITH CIVIL...

  17. Metamodelling Messages Conveyed in Five Statistical Mechanical Textbooks from 1936 to 2001

    Science.gov (United States)

    Niss, Martin

    2009-01-01

    Modelling is a significant aspect of doing physics and it is important how this activity is taught. This paper focuses on the explicit or implicit messages about modelling conveyed to the student in the treatments of phase transitions in statistical mechanics textbooks at beginning graduate level. Five textbooks from the 1930s to the present are…

  18. 76 FR 31978 - Notice of Realty Action: Recreation and Public Purposes Act Classification and Conveyance of...

    Science.gov (United States)

    2011-06-02

    ... has been used for solid waste disposal or any other purpose which may result in the disposal... to the State of Colorado's Hazardous Materials and Waste Management Division under Subtitle D. In..., including the United States general mining laws, except for conveyance under the R&PP Act, leasing under the...

  19. Damping of a fluid-conveying pipe surrounded by a viscous annulus fluid

    Science.gov (United States)

    Kjolsing, Eric J.; Todd, Michael D.

    2017-04-01

    To further the development of a downhole vibration based energy harvester, this study explores how fluid velocity affects damping in a fluid-conveying pipe stemming from a viscous annulus fluid. A linearized equation of motion is formed which employs a hydrodynamic forcing function to model the annulus fluid. The system is solved in the frequency domain through the use of the spectral element method. The three independent variables investigated are the conveyed fluid velocity, the rotational stiffness of the boundary (using elastic springs), and the annulus fluid viscosity. It was found that, due to the hydrodynamic functions frequency-dependence, increasing the conveyed fluid velocity increases the systems damping ratio. It was also noted that stiffer systems saw the damping ratio increase at a slower rate when compared to flexible systems as the conveyed fluid velocity was increased. The results indicate that overestimating the stiffness of a system can lead to underestimated damping ratios and that this error is made worse if the produced fluid velocity or annulus fluid viscosity is underestimated. A numeric example was provided to graphically illustrate these errors. Approved for publication, LA-UR-15-28006.

  20. 75 FR 1653 - Notice of Realty Action: Recreation and Public Purposes Act Classification, Lease and Conveyance...

    Science.gov (United States)

    2010-01-12

    ... parties may submit written comments regarding this proposed classification and lease or sale of this... proposed classification, lease and sale will be reviewed by the BLM Idaho State Director, who may sustain... March 15, 2010. The lands will not be available for lease and conveyance until after the...

  1. 76 FR 16809 - Notice of Realty Action; Recreation and Public Purposes Act Classification; Lease and Conveyance...

    Science.gov (United States)

    2011-03-25

    ... regarding this proposed classification and lease or sale of this public land until May 9, 2011. ADDRESSES... available for lease or conveyance until after the classification becomes effective. (Authority: 43 CFR 2741... Bureau of Land Management Notice of Realty Action; Recreation and Public Purposes Act...

  2. 76 FR 6816 - Notice of Realty Action: Recreation and Public Purposes Act Classification; Lease and Conveyance...

    Science.gov (United States)

    2011-02-08

    ...: Interested parties may submit written comments regarding the proposed classification for lease and/or... for classification for lease and/or conveyance to the Cultural Department of the State of New Mexico... Bureau of Land Management Notice of Realty Action: Recreation and Public Purposes Act...

  3. 75 FR 35084 - Notice of Realty Action: Recreation and Public Purposes Act Classification; Lease and Conveyance...

    Science.gov (United States)

    2010-06-21

    ... guarantee that we will be able to do so. Any adverse comments on the proposed classification, lease and sale... be available for lease and conveyance until after the classification becomes effective. Authority: 43... Bureau of Land Management Notice of Realty Action: Recreation and Public Purposes Act...

  4. Phase shift effects for fluid conveying pipes with non-ideal supports

    DEFF Research Database (Denmark)

    Dahl, Jonas; Thomsen, Jon Juel

    2008-01-01

    Vibrations of a fluid-conveying pipe with non-ideal supports are investigated with respect to phase shift effects. A numerical Galerkin approach is developed for this general problem, and the use of it exemplified with a investigation of phase shift effects from rotational damping at supports...

  5. HBV genotypic variability in Cuba.

    Science.gov (United States)

    Loureiro, Carmen L; Aguilar, Julio C; Aguiar, Jorge; Muzio, Verena; Pentón, Eduardo; Garcia, Daymir; Guillen, Gerardo; Pujol, Flor H

    2015-01-01

    The genetic diversity of HBV in human population is often a reflection of its genetic admixture. The aim of this study was to explore the genotypic diversity of HBV in Cuba. The S genomic region of Cuban HBV isolates was sequenced and for selected isolates the complete genome or precore-core sequence was analyzed. The most frequent genotype was A (167/250, 67%), mainly A2 (149, 60%) but also A1 and one A4. A total of 77 isolates were classified as genotype D (31%), with co-circulation of several subgenotypes (56 D4, 2 D1, 5 D2, 7 D3/6 and 7 D7). Three isolates belonged to genotype E, two to H and one to B3. Complete genome sequence analysis of selected isolates confirmed the phylogenetic analysis performed with the S region. Mutations or polymorphisms in precore region were more common among genotype D compared to genotype A isolates. The HBV genotypic distribution in this Caribbean island correlates with the Y lineage genetic background of the population, where a European and African origin prevails. HBV genotypes E, B3 and H isolates might represent more recent introductions.

  6. HBV Genotypic Variability in Cuba

    Science.gov (United States)

    Loureiro, Carmen L.; Aguilar, Julio C.; Aguiar, Jorge; Muzio, Verena; Pentón, Eduardo; Garcia, Daymir; Guillen, Gerardo; Pujol, Flor H.

    2015-01-01

    The genetic diversity of HBV in human population is often a reflection of its genetic admixture. The aim of this study was to explore the genotypic diversity of HBV in Cuba. The S genomic region of Cuban HBV isolates was sequenced and for selected isolates the complete genome or precore-core sequence was analyzed. The most frequent genotype was A (167/250, 67%), mainly A2 (149, 60%) but also A1 and one A4. A total of 77 isolates were classified as genotype D (31%), with co-circulation of several subgenotypes (56 D4, 2 D1, 5 D2, 7 D3/6 and 7 D7). Three isolates belonged to genotype E, two to H and one to B3. Complete genome sequence analysis of selected isolates confirmed the phylogenetic analysis performed with the S region. Mutations or polymorphisms in precore region were more common among genotype D compared to genotype A isolates. The HBV genotypic distribution in this Caribbean island correlates with the Y lineage genetic background of the population, where a European and African origin prevails. HBV genotypes E, B3 and H isolates might represent more recent introductions. PMID:25742179

  7. The NCBI dbGaP database of genotypes and phenotypes.

    Science.gov (United States)

    Mailman, Matthew D; Feolo, Michael; Jin, Yumi; Kimura, Masato; Tryka, Kimberly; Bagoutdinov, Rinat; Hao, Luning; Kiang, Anne; Paschall, Justin; Phan, Lon; Popova, Natalia; Pretel, Stephanie; Ziyabari, Lora; Lee, Moira; Shao, Yu; Wang, Zhen Y; Sirotkin, Karl; Ward, Minghong; Kholodov, Michael; Zbicz, Kerry; Beck, Jeffrey; Kimelman, Michael; Shevelev, Sergey; Preuss, Don; Yaschenko, Eugene; Graeff, Alan; Ostell, James; Sherry, Stephen T

    2007-10-01

    The National Center for Biotechnology Information has created the dbGaP public repository for individual-level phenotype, exposure, genotype and sequence data and the associations between them. dbGaP assigns stable, unique identifiers to studies and subsets of information from those studies, including documents, individual phenotypic variables, tables of trait data, sets of genotype data, computed phenotype-genotype associations, and groups of study subjects who have given similar consents for use of their data.

  8. Sex-specific genotype-by-environment interactions for cuticular hydrocarbon expression in decorated crickets, Gryllodes sigillatus: implications for the evolution of signal reliability.

    Science.gov (United States)

    Weddle, C B; Mitchell, C; Bay, S K; Sakaluk, S K; Hunt, J

    2012-10-01

    Phenotypic traits that convey information about individual identity or quality are important in animal social interactions, and the degree to which such traits are influenced by environmental variation can have profound effects on the reliability of these cues. Using inbred genetic lines of the decorated cricket, Gryllodes sigillatus, we manipulated diet quality to test how the cuticular hydrocarbon (CHC) profiles of males and females respond across two different nutritional rearing environments. There were significant differences between lines in the CHC profiles of females, but the effect of diet was not quite statistically significant. There was no significant genotype-by-environment interaction (GEI), suggesting that environmental effects on phenotypic variation in female CHCs are independent of genotype. There was, however, a significant effect of GEI for males, with changes in both signal quantity and content, suggesting that environmental effects on phenotypic expression of male CHCs are dependent on genotype. The differential response of male and female CHC expression to variation in the nutritional environment suggests that these chemical cues may be under sex-specific selection for signal reliability. Female CHCs show the characteristics of reliable cues of identity: high genetic variability, low condition dependence and a high degree of genetic determination. This supports earlier work showing that female CHCs are used in self-recognition to identify previous mates and facilitate polyandry. In contrast, male CHCs show the characteristics of reliable cues of quality: condition dependence and a relatively higher degree of environmental determination. This suggests that male CHCs are likely to function as cues of underlying quality during mate choice and/or male dominance interactions.

  9. Indexing Finite Language Representation of Population Genotypes

    CERN Document Server

    Sirén, Jouni; Mäkinen, Veli

    2010-01-01

    We propose a way to index population genotype information together with the complete genome sequence so that one can use the index to efficiently align a given sequence to the genome with all plausible genotype recombinations taken into account. This is achieved through converting the multiple alignment of individual genomes into a finite automaton recognizing the language of all substrings read from the alignment by switching the row at any time. The finite automaton is then indexed with an extension of Burrows-Wheeler transform to allow pattern search inside the plausible recombinant sequences generated in this way. The size of the finite automaton and the index created from it stay limited because of the high similarity of the individual genomes in the multiple alignment. In our experiments, the index took even less space than previous ones designed for indexing just the individual genomes. On a short-read alignment experiment, we found about 1% of matches to novel recombinants.

  10. Subjective Information Measure and Rate Fidelity Theory

    CERN Document Server

    Lu, Chenguang

    2007-01-01

    Using fish-covering model, this paper intuitively explains how to extend Hartley's information formula to the generalized information formula step by step for measuring subjective information: metrical information (such as conveyed by thermometers), sensory information (such as conveyed by color vision), and semantic information (such as conveyed by weather forecasts). The pivotal step is to differentiate condition probability and logical condition probability of a message. The paper illustrates the rationality of the formula, discusses the coherence of the generalized information formula and Popper's knowledge evolution theory. For optimizing data compression, the paper discusses rate-of-limiting-errors and its similarity to complexity-distortion based on Kolmogorov's complexity theory, and improves the rate-distortion theory into the rate-fidelity theory by replacing Shannon's distortion with subjective mutual information. It is proved that both the rate-distortion function and the rate-fidelity function ar...

  11. Proteome Differences between Hepatitis B Virus Genotype-B- and Genotype-C-Induced Hepatocellular Carcinoma Revealed by iTRAQ-Based Quantitative Proteomics.

    Science.gov (United States)

    Wei, Dahai; Zeng, Yongyi; Xing, Xiaohua; Liu, Hongzhi; Lin, Minjie; Han, Xiao; Liu, Xiaolong; Liu, Jingfeng

    2016-02-05

    Hepatitis B virus (HBV) is the main cause of hepatocellular carcinoma (HCC) in southeast Asia where HBV genotype B and genotype C are the most prevalent. Viral genotypes have been reported to significantly affect the clinical outcomes of HCC. However, the underlying molecular differences among different genotypes of HBV virus infected HCC have not been revealed. Here, we applied isobaric tags for relative and absolute quantitation (iTRAQ) technology integrated with liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis to identify the proteome differences between the HBV genotypes B- and C-induced HCC. In brief, a total of 83 proteins in the surrounding noncancerous tissues and 136 proteins in the cancerous tissues between HBV genotype-B- and genotype-C-induced HCC were identified, respectively. This information revealed that there might be different molecular mechanisms of the tumorigenesis and development of HBV genotypes B- and C-induced HCC. Furthermore, our results indicate that the two proteins ARFIP2 and ANXA1 might be potential biomarkers for distinguishing the HBV genotypes B- and C-induced HCC. Thus, the quantitative proteomic analysis revealed molecular differences between the HBV genotypes B- and C-induced HCC, and might provide fundamental information for further deep study.

  12. Belt conveyer

    Energy Technology Data Exchange (ETDEWEB)

    Cwieczek, A.; Dembinski, C.

    1982-04-30

    The patented belt conveyor is distinguished by the fact that the rate of motion of the belt changes smoothly depending on the load: the greater the load the higher the rate. This makes it possible to prolong the service life of the belt, i.e., during idling of the conveyor it is exposed to deformation on the drive and tension drums a fewer number of times. The essence of the invention is based on the use for driving the drum of a friction transmission. One of the elements of this transmission is the drive drum of the conveyor, and the other is the drive wheel which is pressed to the inner (or outer) surface of the drum. Change in rotation velocity of the drum is reached by changing the diameter of the drive wheel. The rim of the latter has an elastic tire to which compressed air is fed. The diameter of the drive wheel depends on the quantity of air in the tire. It is set automatically by a regulating system depending on the conveyor load. Variants are patented for the belt conveyor which is distinguished by the design of the friction transmission. It contains 1, 2 or more drive wheels. It can have a cylindrical or conical inner surface of the drive drum, etc.

  13. 48 CFR 1827.305-4 - Conveyance of invention rights acquired by the Government. (NASA supplements paragraph (a))

    Science.gov (United States)

    2010-10-01

    ... 48 Federal Acquisition Regulations System 6 2010-10-01 2010-10-01 true Conveyance of invention... PATENTS, DATA, AND COPYRIGHTS Patent Rights Under Government Contracts 1827.305-4 Conveyance of invention... entire right to, title to, and interest in an invention under the clause at 1852.227-70, New Technology...

  14. 36 CFR 251.19 - Exercise of water rights reserved by the grantor of lands conveyed to the United States.

    Science.gov (United States)

    2010-07-01

    ... 36 Parks, Forests, and Public Property 2 2010-07-01 2010-07-01 false Exercise of water rights... Grantors § 251.19 Exercise of water rights reserved by the grantor of lands conveyed to the United States. This section governs the exercise of water and related rights reserved by the grantor of lands conveyed...

  15. 77 FR 1081 - Notice of Realty Action: Classification for Lease and/or Subsequent Conveyance for Recreation and...

    Science.gov (United States)

    2012-01-09

    ...: 14X5232] Notice of Realty Action: Classification for Lease and/or Subsequent Conveyance for Recreation and... classification for lease and/or subsequent conveyance under the provisions of the Recreation and Public Purposes... parties may submit written comments regarding the proposed classification of the land for lease...

  16. 9 CFR 93.302 - Inspection of certain aircraft and other means of conveyance and shipping containers thereon...

    Science.gov (United States)

    2010-01-01

    ...; REQUIREMENTS FOR MEANS OF CONVEYANCE AND SHIPPING CONTAINERS Horses § 93.302 Inspection of certain aircraft and... contaminated with material of animal (including poultry) origin, such as, but not limited to, meat, organs... determines that a means of conveyance or shipping container is contaminated with material of animal origin so...

  17. Genotype transposer: automated genotype manipulation for linkage disequilibrium analysis.

    Science.gov (United States)

    Cox, D G; Canzian, F

    2001-08-01

    The purpose of this work is to provide the modern molecular geneticist with tools to perform more efficient and more accurate analysis of the genotype data they produce. By using Microsoft Excel macros written in Visual Basic, we can translate genotype data into a form readable by the versatile software 'Arlequin', read the Arlequin output, calculate statistics of linkage disequilibrium, and put the results in a format for viewing with the software 'GOLD'. The software is available by FTP at: ftp://xcsg.iarc.fr/cox/Genotype_Transposer/. Detailed instruction and examples are available at: ftp://xcsg.iarc.fr/cox/Genotype&_Transposer/. Arlequin is available at: http://lgb.unige.ch/arlequin/. GOLD is available at: http://www.well.ox.ac.uk/asthma/GOLD/.

  18. Method of automatic regulation of output of the feed unit of a conveyer

    Energy Technology Data Exchange (ETDEWEB)

    Smetana, A.V.; Feofilov, G.P.; Karpov, B.G.

    1979-11-15

    A method is proposed for regulating the output of a feed unit of a conveyer for fuel supply of an TES operating on solid fuel. Regulation of each feeder 7-8-9 is done by the corresponding regulator 13-14-15 by changing the output according to the lower signal of the drive of a common conveyer 1. In order to improve reliability and quality of operation of the feed unit, an additional signal is supplied to each regulator of output 13-14-15 of the feeders which equals the distance between the signal averaged for the levels in all the bins 4-5-6 and the signal for the level in the given bin. Loading of the conveyer is stabilized at the assigned level by changing the rotations of the drives 10-11-12 of feeders 7-8-9 from regulators 13-14-15 for output of the feeders to which the signal is supplied from sensor 3 for load of the engine 2 of conveyer 1. In order to balance the level in the bins 4-5-6, supply to each regulator of output of the feeders of additional signals is stipulated equal to h /SUB cp/ -h /SUB i/ (i=1, 2, 3). The signals from the level sensors 16-17-18 enter the averaging block 19, from whose outlet h /SUB cp/ =h/sub 1/+h/sub 32/+h/sub 3/ is fed to the block of summation 20-21-22 to which signals are also supplied from the level sensors 16-17-18. The total signal does not influence the contour for regulating the conveyer load. The signals coming to each of the regulators change the output of its feeder so that the levels of the bulk material in the bins will be leveled. Thus, maximum loading of the conveyer with fuel is implemented, and at the same time misalignment of the levels in the bins is eliminated. The specific consumption of electricity is diminished, the reliability and quality of operation of the feed unit are improved, the personnel are freed of the need to trace the fuel level in the bins.

  19. HOPF BIFURCATION OF A NONLINEAR RESTRAINED CURVED PIPE CONVEYING FLUID BY DIFFERENTIAL QUADRATURE METHOD

    Institute of Scientific and Technical Information of China (English)

    WangLin; NiQiao; HuangYuying

    2003-01-01

    This paper proposes a new method for investigating the Hopf bifurcation of a curved pipe conveying fluid with nonlinear spring support. The nonlinear equation of motion is derived by forces equilibrium on microelement of the system under consideration. The spatial coordinate of the system is discretized by the differential quadrature method and then the dynamic equation is solved by the Newton-Raphson method. The numerical solutions show that the inner fluid velocity of the Hopf bifurcation point of the curved pipe varies with different values of the parameter,nonlinear spring stiffness. Based on this, the cycle and divergent motions are both found to exist at specific fluid flow velocities with a given value of the nonlinear spring stiffness. The results are useful for further study of the nonlinear dynamic mechanism of the curved fluid conveying pipe.

  20. Nonlinear Response of Vibrational Conveyers with Nonideal Vibration Exciter: Superharmonic and Subharmonic Resonance

    Directory of Open Access Journals (Sweden)

    H. Bayıroğlu

    2012-01-01

    Full Text Available Vibrational conveyers with a centrifugal vibration exciter transmit their load based on the jumping method. Common unbalanced-mass driver oscillates the trough. The motion is strictly related to the vibrational parameters. The transition over resonance of a vibratory system, excited by rotating unbalances, is important in terms of the maximum vibrational amplitude produced and the power demand on the drive for the crossover. The mechanical system is driven by the DC motor. In this study, the working ranges of oscillating shaking conveyers with nonideal vibration exciter have been analyzed analytically for superharmonic and subharmonic resonances by the method of multiple scales and numerically. The analytical results obtained in this study agree well with the numerical results.

  1. Variational discretizations for the dynamics of fluid-conveying flexible tubes

    Science.gov (United States)

    Gay-Balmaz, François; Putkaradze, Vakhtang

    2016-11-01

    We derive a variational approach for discretizing fluid-structure interactions, with a particular focus on the dynamics of fluid-conveying elastic tubes. Our method is based on a discretization of the fluid's back-to-labels map and a Lie group discretization of the tube's variables, coupled with an appropriately formulated discrete version of the fluid conservation law. This approach allows the development of geometric numerical schemes for the dynamics of fluid-conveying collapsible tubes, which preserve several intrinsic geometric properties of the continuous system, such as symmetries and symplecticity. In addition, our approach can also be used to derive simplified, but geometrically consistent, low-component models for further analytical and numerical analysis of the system. xml:lang="fr"

  2. Screening cotton genotypes for seedling drought tolerance

    Directory of Open Access Journals (Sweden)

    Penna Julio C. Viglioni

    1998-01-01

    Full Text Available The objectives of this study were to adapt a screening method previously used to assess seedling drought tolerance in cereals for use in cotton (Gossypium hirsutum L. and to identify tolerant accessions among a wide range of genotypes. Ninety genotypes were screened in seven growth chamber experiments. Fifteen-day-old seedlings were subjected to four 4-day drought cycles, and plant survival was evaluated after each cycle. Three cycles are probably the minimum required in cotton work. Significant differences (at the 0.05 level or lower among entries were obtained in four of the seven experiments. A "confirmation test" with entries previously evaluated as "tolerant" (high survival and "susceptible" (low survival was run. A number of entries duplicated their earlier performance, but others did not, which indicates the need to reevaluate selections. Germplasms considered tolerant included: `IAC-13-1', `IAC-RM4-SM5', `Minas Sertaneja', `Acala 1517E-1' and `4521'. In general, the technique is simple, though time-consuming, with practical value for screening a large number of genotypes. Results from the screening tests generally agreed with field information. The screening procedure is suitable to select tolerant accessions from among a large number of entries in germplasm collections as a preliminary step in breeding for drought tolerance. This research also demonstrated the need to characterize the internal lack of uniformity in growth chambers to allow for adequate designs of experiments.

  3. Radio Electric Asymmetric Conveyer: A Novel Neuromodulation Technology in Alzheimer’s and Other Neurodegenerative Diseases

    OpenAIRE

    2015-01-01

    Global research in the field of pharmacology has not yet found effective drugs to treat Alzheimer's disease. Thus, alternative therapeutic strategies are under investigation, such as neurostimulation by physical means. Radio electric asymmetric conveyer (REAC) is one of these technologies and has, until now, been used in clinical studies on several psychiatric and neurological disorders with encouraging results in the absence of side effects. Moreover, studies at the cellular level have shown...

  4. Conveying corporate communication by the means of organizing an event- Case Antti Arola Ltd

    OpenAIRE

    Arola, Sara

    2015-01-01

    This thesis is built around the concept of conveying corporate communication and brand communication through organizing an event. Corporate communication is a way to lead the company´s stakeholders to create certain images of the company and to create relationships with the stakeholders. Part of the company´s corporate communication is brand communication. Brand communication is familiarizing products or services to the target group through marketing, creating images and influencing the stake...

  5. Integral transform solutions of dynamic response of a clamped-clamped pipe conveying fluid

    Energy Technology Data Exchange (ETDEWEB)

    Gu Jijun; An Chen [Ocean Engineering Program, COPPE, Universidade Federal do Rio de Janeiro, CP 68508, Rio de Janeiro 21941-972 (Brazil); Duan Menglan [Offshore Oil/Gas Research Center, China University of Petroleum, Beijing 102249 (China); Levi, Carlos [Ocean Engineering Program, COPPE, Universidade Federal do Rio de Janeiro, CP 68508, Rio de Janeiro 21941-972 (Brazil); Su Jian, E-mail: sujian@nuclear.ufrj.br [Nuclear Engineering Program, COPPE, Universidade Federal do Rio de Janeiro, CP 68509, Rio de Janeiro 21941-972 (Brazil)

    2013-01-15

    Highlights: Black-Right-Pointing-Pointer Dynamic response of pipe conveying fluid was studied numerically. Black-Right-Pointing-Pointer The generalized integral transform technique (GITT) was applied. Black-Right-Pointing-Pointer Numerical solutions with automatic global accuracy control were obtained. Black-Right-Pointing-Pointer Excellent convergence behavior was shown. Black-Right-Pointing-Pointer Modal separation analysis was carried out and the influence of mass ratio was analyzed. - Abstract: Analysis of dynamic response of pipe conveying fluid is an important aspect in nuclear power plant design. In the present paper, dynamic response of a clamped-clamped pipe conveying fluid was solved by the generalized integral transform technique (GITT). The governing partial differential equation was transformed into a set of second-order ordinary differential equations which is then numerically solved by making use of the subroutine DIVPAG from IMSL Library. A thorough convergence analysis was performed to yield sets of reference results of the transverse deflection at different time and spanwise position. We found good agreement between the computed natural frequencies at mode 1-3 and those obtained by previous theoretical study. Besides, modal separation analysis was carried out and the influence of mass ratio on deflection and natural frequencies was qualitatively and quantitatively assessed.

  6. Determination of slug permeability factor for pressure drop prediction of slug flow pneumatic conveying

    Institute of Scientific and Technical Information of China (English)

    Shengming Tan; Kenneth C.Williams; Mark G.Jones; Tobias Krull

    2008-01-01

    Current models for pressure drop prediction of slug flow pneumatic conveying in a horizontal pipeline system assume some type of steady state conditions for prediction,which limits their capability for increased predictive accuracy relative to experimental data.This is partly because of the nature of slug flow pneumatic conveying system,which,as a dynamic system,never becomes stable.By utilising conservation of mass (airflow),a dynamic pressure analysis model is proposed on the basis of the derivative of the upstream pressure behaviour.The rate of air permeation through slug,one of the important factors in the conservation model,is expressed as a function of a slug permeability factor.Other factors such as slug velocity,slug length and the fraction of stationary layer were also considered.Several test materials were conveyed in single-slug tests to verify the proposed pressure drop model,showing good agreement between the model and experimental results.

  7. Investigation of influence of coal properties on dense-phase pneumatic conveying at high pressure

    Institute of Scientific and Technical Information of China (English)

    Cai Liang; Xiaoxu Xie; Pan Xu; Xiaoping Chen; Changsui Zhao; Xin Wu

    2012-01-01

    Experiments of dense-phase pneumatic conveying of pulverized coal using nitrogen were carried out in a test facility at pressures of up to 3.7 MPa to study the effects of coal type,particle size and moisture content on flow characteristics.The Jenike shear test and scanning electron microscopy (SEM) were employed to provide a better understanding of effects of the material properties on flow characteristics.Two kinds of pulverized coals,Yanzhou and Datong,with similar particle size,moisture content and density,were used in the test.Pressure drop increases with increasing the particle size at similar solid-gas ratio,superficial velocity and pressure in the receiving hopper,and pressure drops through different test sections decrease firstly and then rise with increasing the conveying velocity for the same particle size,mass flow rate and pressure in the receiving hopper.The flowability of pulverized coal decreases with increasing the moisture content in the range from 3.24% to 8.18%.Unconfined yield strength (UYS) increases and flow function (FF) decreases with increasing the moisture content.Results of the shearing tests are consistent with the results of the conveying study.Pressure drops through different test sections are discussed and analyzed.

  8. Chlamydia trachomatis genotypes in a cross-sectional study of urogenital samples from remote Northern and Central Australia

    Science.gov (United States)

    Giffard, Philip M; Brenner, Nicole C; Tabrizi, Sepehr N; Garland, Suzanne M; Holt, Deborah C; Andersson, Patiyan; Lilliebridge, Rachael A; Tong, Steven Y C; Karimi, Mahdad; Boylan, Prudence; Ryder, Nathan; Johns, Tracy; Singh, Gurmeet

    2016-01-01

    Objectives The objective was to determine the frequency of trachoma genotypes of Chlamydia trachomatis-positive urogenital tract (UGT) specimens from remote areas of the Australian Northern Territory (NT). Setting The setting was analysis of remnants of C. trachomatis positive primarily UGT specimens obtained in the course of clinical practice. The specimens were obtained from two pathology service providers. Participants From 3356 C. trachomatis specimens collected during May 2012–April 2013, 439 were selected for genotyping, with a focus on specimens from postpubescent patients, in remote Aboriginal communities where ocular trachoma is potentially present. Primary and secondary outcome measures The primary outcome measure was the proportion of successfully genotyped UGT specimens that were trachoma genotypes. The secondary outcome measures were the distribution of genotypes, and the frequencies of different classes of specimens able to be genotyped. Results Zero of 217 successfully genotyped UGT specimens yielded trachoma genotypes (95% CI for frequency=0–0.017). For UGT specimens, the genotypes were E (41%), F (22%), D (21%) and K (7%), with J, H and G and mixed genotypes each at 1–4%. Four of the five genotyped eye swabs yielded trachoma genotype Ba, and the other genotype J. Two hundred twenty-two specimens (50.6%) were successfully genotyped. Urine specimens were less likely to be typable than vaginal swabs (p<0.0001). Conclusions Unlike in some other studies, in the remote NT, trachoma genotypes of C. trachomatis were not found circulating in UGT specimens from 2012 to 2013. Therefore, C. trachomatis genotypes in UGT specimens from young children can be informative as to whether the organism has been acquired through sexual contact. We suggest inclusion of C. trachomatis genotyping in guidelines examining the source of sexually transmitted infections in young children in areas where trachoma genotypes may continue to circulate, and continued

  9. Celer: an Efficient Program for Genotype Elimination

    Directory of Open Access Journals (Sweden)

    Nicoletta De Francesco

    2010-08-01

    Full Text Available This paper presents an efficient program for checking Mendelian consistency in a pedigree. Since pedigrees may contain incomplete and/or erroneous information, geneticists need to pre-process them before performing linkage analysis. Removing superfluous genotypes that do not respect the Mendelian inheritance laws can speed up the linkage analysis. We have described in a formal way the Mendelian consistency problem and algorithms known in literature. The formalization helped to polish the algorithms and to find efficient data structures. The performance of the tool has been tested on a wide range of benchmarks. The results are promising if compared to other programs that treat Mendelian consistency.

  10. Celer: an Efficient Program for Genotype Elimination

    CERN Document Server

    De Francesco, Nicoletta; Martini, Luca; 10.4204/EPTCS.33.4

    2010-01-01

    This paper presents an efficient program for checking Mendelian consistency in a pedigree. Since pedigrees may contain incomplete and/or erroneous information, geneticists need to pre-process them before performing linkage analysis. Removing superfluous genotypes that do not respect the Mendelian inheritance laws can speed up the linkage analysis. We have described in a formal way the Mendelian consistency problem and algorithms known in literature. The formalization helped to polish the algorithms and to find efficient data structures. The performance of the tool has been tested on a wide range of benchmarks. The results are promising if compared to other programs that treat Mendelian consistency.

  11. Loads Acting on the Mine Conveyance Attachments and Tail Ropes during the Emergency Braking in the Event of an Overtravel

    Science.gov (United States)

    Wolny, Stanisław

    2016-09-01

    It has now become the common practice among the design engineers that in dimensioning of structural components of conveyances, particularly the load bearing elements, they mostly use methods that do not enable the predictions of their service life, instead they rely on determining the safety factor related to the static loads exclusively. In order to solve the problem, i.e. to derive and verify the key relationships needed to determine the fatigue endurance of structural elements of conveyances expressed in the function of time and taking into account the type of hoisting gear, it is required that the values of all loads acting upon the conveyance should be determined, including those experienced under the emergency conditions, for instance during the braking phase in the event of overtravel. This study relies on the results of dynamic analysis of a hoisting installation during the braking phase when the conveyance approaches the topmost or lowermost levels. For the assumed model of the system, the equations of motion are derived for the hoisting and tail rope elements and for the elastic strings. The section of the hoisting rope between the full conveyance approaching the top station and the Keope pulley is substituted by a spring with the constant elasticity coefficient, equal to that of the rope section at the instant the conveyance begins the underwind travel. Recalling the solution to the wave equation, analytical formulas are provided expressing the displacements of any cross-profiles of hoisting and tail ropes, including the conveyance attachments and tail ropes, in the function of braking forces applied to conveyances in the overtravel path and operational parameters of the hoisting gear. Besides, approximate formulas are provided yielding: loading of the hoisting rope segment between the conveyance braking in the headgear tower and the Keope pulley deceleration of the conveyance during the braking phase. The results will be utilised to derive the function

  12. NS4A protein as a marker of HCV history suggests that different HCV genotypes originally evolved from genotype 1b.

    Science.gov (United States)

    Sarwar, Muhammad T; Kausar, Humera; Ijaz, Bushra; Ahmad, Waqar; Ansar, Muhammad; Sumrin, Aleena; Ashfaq, Usman A; Asad, Sultan; Gull, Sana; Shahid, Imran; Hassan, Sajida

    2011-06-23

    The 9.6 kb long RNA genome of Hepatitis C virus (HCV) is under the control of RNA dependent RNA polymerase, an error-prone enzyme, for its transcription and replication. A high rate of mutation has been found to be associated with RNA viruses like HCV. Based on genetic variability, HCV has been classified into 6 different major genotypes and 11 different subtypes. However this classification system does not provide significant information about the origin of the virus, primarily due to high mutation rate at nucleotide level. HCV genome codes for a single polyprotein of about 3011 amino acids which is processed into structural and non-structural proteins inside host cell by viral and cellular proteases. We have identified a conserved NS4A protein sequence for HCV genotype 3a reported from four different continents of the world i.e. Europe, America, Australia and Asia. We investigated 346 sequences and compared amino acid composition of NS4A protein of different HCV genotypes through Multiple Sequence Alignment and observed amino acid substitutions C22, V29, V30, V38, Q46 and Q47 in NS4A protein of genotype 1b. Furthermore, we observed C22 and V30 as more consistent members of NS4A protein of genotype 1a. Similarly Q46 and Q47 in genotype 5, V29, V30, Q46 and Q47 in genotype 4, C22, Q46 and Q47 in genotype 6, C22, V38, Q46 and Q47 in genotype 3 and C22 in genotype 2 as more consistent members of NS4A protein of these genotypes. So the different amino acids that were introduced as substitutions in NS4A protein of genotype 1 subtype 1b have been retained as consistent members of the NS4A protein of other known genotypes. These observations indicate that NS4A protein of different HCV genotypes originally evolved from NS4A protein of genotype 1 subtype 1b, which in turn indicate that HCV genotype 1 subtype 1b established itself earlier in human population and all other known genotypes evolved later as a result of mutations in HCV genotype 1b. These results were further

  13. NS4A protein as a marker of HCV history suggests that different HCV genotypes originally evolved from genotype 1b

    Directory of Open Access Journals (Sweden)

    Asad Sultan

    2011-06-01

    Full Text Available Abstract Background The 9.6 kb long RNA genome of Hepatitis C virus (HCV is under the control of RNA dependent RNA polymerase, an error-prone enzyme, for its transcription and replication. A high rate of mutation has been found to be associated with RNA viruses like HCV. Based on genetic variability, HCV has been classified into 6 different major genotypes and 11 different subtypes. However this classification system does not provide significant information about the origin of the virus, primarily due to high mutation rate at nucleotide level. HCV genome codes for a single polyprotein of about 3011 amino acids which is processed into structural and non-structural proteins inside host cell by viral and cellular proteases. Results We have identified a conserved NS4A protein sequence for HCV genotype 3a reported from four different continents of the world i.e. Europe, America, Australia and Asia. We investigated 346 sequences and compared amino acid composition of NS4A protein of different HCV genotypes through Multiple Sequence Alignment and observed amino acid substitutions C22, V29, V30, V38, Q46 and Q47 in NS4A protein of genotype 1b. Furthermore, we observed C22 and V30 as more consistent members of NS4A protein of genotype 1a. Similarly Q46 and Q47 in genotype 5, V29, V30, Q46 and Q47 in genotype 4, C22, Q46 and Q47 in genotype 6, C22, V38, Q46 and Q47 in genotype 3 and C22 in genotype 2 as more consistent members of NS4A protein of these genotypes. So the different amino acids that were introduced as substitutions in NS4A protein of genotype 1 subtype 1b have been retained as consistent members of the NS4A protein of other known genotypes. Conclusion These observations indicate that NS4A protein of different HCV genotypes originally evolved from NS4A protein of genotype 1 subtype 1b, which in turn indicate that HCV genotype 1 subtype 1b established itself earlier in human population and all other known genotypes evolved later as a result of

  14. Haplotypes versus genotypes on pedigrees

    Directory of Open Access Journals (Sweden)

    Kirkpatrick Bonnie B

    2011-04-01

    Full Text Available Abstract Background Genome sequencing will soon produce haplotype data for individuals. For pedigrees of related individuals, sequencing appears to be an attractive alternative to genotyping. However, methods for pedigree analysis with haplotype data have not yet been developed, and the computational complexity of such problems has been an open question. Furthermore, it is not clear in which scenarios haplotype data would provide better estimates than genotype data for quantities such as recombination rates. Results To answer these questions, a reduction is given from genotype problem instances to haplotype problem instances, and it is shown that solving the haplotype problem yields the solution to the genotype problem, up to constant factors or coefficients. The pedigree analysis problems we will consider are the likelihood, maximum probability haplotype, and minimum recombination haplotype problems. Conclusions Two algorithms are introduced: an exponential-time hidden Markov model (HMM for haplotype data where some individuals are untyped, and a linear-time algorithm for pedigrees having haplotype data for all individuals. Recombination estimates from the general haplotype HMM algorithm are compared to recombination estimates produced by a genotype HMM. Having haplotype data on all individuals produces better estimates. However, having several untyped individuals can drastically reduce the utility of haplotype data.

  15. Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy.

    Science.gov (United States)

    Hannemann, Jan; Poorter, Hendrik; Usadel, Björn; Bläsing, Oliver E; Finck, Alex; Tardieu, Francois; Atkin, Owen K; Pons, Thijs; Stitt, Mark; Gibon, Yves

    2009-09-01

    Data mining depends on the ability to access machine-readable metadata that describe genotypes, environmental conditions, and sampling times and strategy. This article presents Xeml Lab. The Xeml Interactive Designer provides an interactive graphical interface at which complex experiments can be designed, and concomitantly generates machine-readable metadata files. It uses a new eXtensible Mark-up Language (XML)-derived dialect termed XEML. Xeml Lab includes a new ontology for environmental conditions, called Xeml Environment Ontology. However, to provide versatility, it is designed to be generic and also accepts other commonly used ontology formats, including OBO and OWL. A review summarizing important environmental conditions that need to be controlled, monitored and captured as metadata is posted in a Wiki (http://www.codeplex.com/XeO) to promote community discussion. The usefulness of Xeml Lab is illustrated by two meta-analyses of a large set of experiments that were performed with Arabidopsis thaliana during 5 years. The first reveals sources of noise that affect measurements of metabolite levels and enzyme activities. The second shows that Arabidopsis maintains remarkably stable levels of sugars and amino acids across a wide range of photoperiod treatments, and that adjustment of starch turnover and the leaf protein content contribute to this metabolic homeostasis.

  16. Population samples and genotyping technology.

    Science.gov (United States)

    Mack, S J; Sanchez-Mazas, A; Single, R M; Meyer, D; Hill, J; Dron, H A; Jani, A J; Thomson, G; Erlich, H A

    2007-04-01

    The 14th International HLA (human leukocyte antigen) Immunogenetics Workshop (14th-IHIWS) Biostatistics and Anthropology/Human Genetic Diversity project continues the population sampling, genotype data generation, and biostatistic analyses of the 13th International Histocompatibility Workshop Anthropology/Human Genetic Diversity Component, with the overall goal of further characterizing global HLA allele and haplotype diversity and better describing the relationships between major histocompatibility complex diversity, geography, linguistics, and population history. Since the 13th Workshop, new investigators have and continue to be recruited to the project and new high-resolution class I and class II genotype data are being generated for 112 population samples from around the world.

  17. Identified central neurons convey a mitogenic signal from a peripheral target to the CNS.

    Science.gov (United States)

    Becker, T S; Bothe, G; Berliner, A J; Macagno, E R

    1996-08-01

    Regulation of central neurogenesis by a peripheral target has been previously demonstrated in the ventral nerve cord of the leech Hirudo medicinalis (Baptista, C. A., Gershon, T. R. and Macagno, E. R. (1990). Nature 346, 855-858) Specifically, innervation of the male genitalia by the fifth and sixth segmental ganglia (the sex ganglia) was shown to trigger the birth of several hundred central neurons (PIC neurons) in these ganglia. As reported here, removal of the target early during induction shows that PIC neurons can be independently induced in each side of a ganglion, indicating that the inductive signal is both highly localized and conveyed to each hemiganglion independently. Further, since recent observations (Becker, T., Berliner, A. J., Nitabach, M. N., Gan, W.-B. and Macagno, E. R. (1995). Development, 121, 359-369) had indicated that efferent projections are probably involved in this phenomenon, we individually ablated all possible candidates, which led to the identification of two central neurons that appear to play significant roles in conveying the inductive signal to the CNS. Ablation of a single ML neuron reduced cell proliferation in its own hemiganglion by nearly 50%, on the average. In contrast, proliferation on the opposite side of the ganglion increased by about 25%, suggesting the possibility of a compensatory response by the remaining contralateral ML neuron. Simultaneous ablation of both ML neurons in a sex ganglion caused similar reductions in cell proliferation in each hemiganglion. Deletion of a single AL neuron produced a weaker (7%) but nonetheless reproducible reduction. Ablation of the other nine central neurons that might have been involved in PIC neuron induction had no detectable effect. Both ML and AL neurons exhibit ipsilateral peripheral projections, and both arborize mostly in the hemiganglion where they reside. Thus, we conclude that peripheral regulation of central neurogenesis is mediated in the leech by inductive signals

  18. Effect of Water Conveyance to Impove Water Quality in the Barato River

    Science.gov (United States)

    Sugihara, K.; Nakatsugawa, M.

    2014-12-01

    The Barato River, in the northern part of Sapporo, Hokkaido, was deteriorated because of stagnated water bodies and Sapporo's wastewater inflow. To improve the water quality of the Barato River, water has been diverted from the Ishikari River and the Toyohira River into the uppermost reach and the middle stream of the Barato River since 2007. This study clarifies the water quality change by water conveyance, based on our surveys and simulations. The water quality surveys found that inorganic nitrogen (IN) and biological oxygen demand (BOD) were decreased after water conveyance. And inorganic phosphorus (IP) was increased. To estimate these water quality findings, we constructed a water quality simulation model that incorporates the freezing-over of water bodies. The constructed model shows good temporal and spatial reproducibility and enables water quality to be forecast throughout the year, including the ice-cover period. The forecasts using the model agree well with the survey results of the 2007-2010. From calculation results, it was assumed that IN and BOD decreasing was caused by dilution and phytoplankton decreasing. IP increasing assumed due to accumulation of unused phosphorus by phytoplankton. And remarkable changes seem in survey result. Blue-green algae decreased selectively with water conveyance year by year from 2007.However, blue-green algae increased from 2011, in additionally dominant species of blue-green algae change to Merismopedia punctate from Phormidium spp. These change suggest that regime sift occurred in blue-green algae selectively and BOD value of the Barato River showed to improved. But, ecosystem model parameter of phytoplankton needs to calibrate again.

  19. Health Information Systems.

    Science.gov (United States)

    Sirintrapun, S Joseph; Artz, David R

    2015-06-01

    This article provides surgical pathologists an overview of health information systems (HISs): what they are, what they do, and how such systems relate to the practice of surgical pathology. Much of this article is dedicated to the electronic medical record. Information, in how it is captured, transmitted, and conveyed, drives the effectiveness of such electronic medical record functionalities. So critical is information from pathology in integrated clinical care that surgical pathologists are becoming gatekeepers of not only tissue but also information. Better understanding of HISs can empower surgical pathologists to become stakeholders who have an impact on the future direction of quality integrated clinical care.

  20. Dynamic instability analysis of single walled Carbone Nano Tubes conveying fluid under generalized boundary conditions

    Directory of Open Access Journals (Sweden)

    Azrar A.

    2012-07-01

    Full Text Available The dynamic instabilities of Carbon NanoTubes (CNTs conveying fluid are modeled and numerically simulated based on the nonlocal elasticity theory. The small scale parameter and the fluid-tube interaction effects on the dynamic behaviors of the CNT-fluid system as well as the instabilities induced by the fluid-velocity are investigated. The critical fluid-velocity and frequency-amplitude relationships as well as the flutter and divergence instability types and the associated time responses can be obtained based on the presented methodological approach.

  1. NONLINEAR RESPONSES OF A FLUID-CONVEYING PIPE EMBEDDED IN NONLINEAR ELASTIC FOUNDATIONS

    Institute of Scientific and Technical Information of China (English)

    Qin Qian; Lin Wang; Qiao Ni

    2008-01-01

    The nonlinear responses of planar motions of a fluid-conveying pipe embedded in nonlinear elastic foundations are investigated via the differential quadrature method diseretization (DQMD) of the governing partial differential equation. For the analytical model, the effect of the nonlinear elastic foundation is modeled by a nonlinear restraining force. By using an iterative algorithm, a set of ordinary differential dynamical equations derived from the equation of motion of the system are solved numerically and then the bifurcations are analyzed. The numerical results, in which the existence of chaos is demonstrated, are presented in the form of phase portraits of the oscillations. The intermittency transition to chaos has been found to arise.

  2. Study on the Motion state of Powdery materials in Dense-phase Pneumatic Conveying Pipe

    Directory of Open Access Journals (Sweden)

    Lia Zhihua

    2016-01-01

    Full Text Available Using the method of computational fluid dynamics, a model is created about powdery materials flowing in the dense-phase pneumatic conveying pipe. the motion state powdery materials flowing in the horizontal and vertical pipe is simulated. It is found that in the horizontal pipe the powdery materials represent the flow of dune-like state, and continuously move forward in this form, the volume fraction of powdery materials at the pipe's bottom is large, the velocity is low; In the vertical pipe, the columnar solid-plug can form and scatter continuously, and the motion state is closer to fluidization.

  3. DYNAMIC STABILITY OF A BEAM-MODEL VISCOELASTIC PIPE FOR CONVEYING PULSATIVE FLUID

    Institute of Scientific and Technical Information of China (English)

    Xiaodong Yang; Tianzhi Yang; Jiduo Jin

    2007-01-01

    The dynamic stability in transverse vibration of a viscoelastic pipe for conveying pulsative fluid is investigated for the simply-supported case. The material property of the beammodel pipe is described by the Kelvin-type viscoelastic constitutive relation. The axial fluid speed is characterized as simple harmonic variation about a constant mean speed. The method of multiple scales is applied directly to the governing partial differential equation without discretization when the viscoelastic damping and the periodical excitation are considered small. The stability conditions are presented in the case of subharmonic and combination resonance. Numerical results show the effect of viscosity and mass ratio on instability regions.

  4. RESEARCH ON SYSTEM DYNAMICS MODEL OF CONVEYANCE CAPACITY IN SYMMETRIC COMPOUND CHANNELS

    Institute of Scientific and Technical Information of China (English)

    YANG Ke-jun; CAO Shu-you; LIU Xing-nian

    2005-01-01

    Stage-discharge curves are particularly important in river basin management. For a compound channel, the stage-discharge curve is often difficult to be extrapolated to yield estimates of level for a given frequency of flow. By analyzing a large number of experimental data from Science and Engineering Research Council Flood Channel Facility (SERC-FCF) and applying system dynamics method, the authors established system dynamics model of conveyance capacity when rivers flow in an overbank mode, spilling onto the adjoining flood plain. The model was applied to a compound channel. And the corresponding simulated results are shown to attain high accurcy.

  5. Pooled DNA genotyping on Affymetrix SNP genotyping arrays

    Directory of Open Access Journals (Sweden)

    Owen Michael J

    2006-02-01

    Full Text Available Abstract Background Genotyping technology has advanced such that genome-wide association studies of complex diseases based upon dense marker maps are now technically feasible. However, the cost of such projects remains high. Pooled DNA genotyping offers the possibility of applying the same technologies at a fraction of the cost, and there is some evidence that certain ultra-high throughput platforms also perform with an acceptable accuracy. However, thus far, this conclusion is based upon published data concerning only a small number of SNPs. Results In the current study we prepared DNA pools from the parents and from the offspring of 30 parent-child trios that have been extensively genotyped by the HapMap project. We analysed the two pools with Affymetrix 10 K Xba 142 2.0 Arrays. The availability of the HapMap data allowed us to validate the performance of 6843 SNPs for which we had both complete individual and pooled genotyping data. Pooled analyses averaged over 5–6 microarrays resulted in highly reproducible results. Moreover, the accuracy of estimating differences in allele frequency between pools using this ultra-high throughput system was comparable with previous reports of pooling based upon lower throughput platforms, with an average error for the predicted allelic frequencies differences between the two pools of 1.37% and with 95% of SNPs showing an error of Conclusion Genotyping thousands of SNPs with DNA pooling using Affymetrix microarrays produces highly accurate results and can be used for genome-wide association studies.

  6. Microsatellite analysis of selected Lablab purpureus genotypes in ...

    African Journals Online (AJOL)

    cntaganda

    Information on genetic worth and diversity of lablab genotypes in Kenya is scanty and ... Due to advances in molecular biology techniques, large numbers of highly ..... program for effective and efficient management/utilization of plant genetic ... response to selection pressures to suit particular environments (Maass and.

  7. Physiological response of soybean genotypes to plant density

    NARCIS (Netherlands)

    Gan, Y.; Stulen, H.; Keulen, van H.; Kuiper, P.J.C.

    2002-01-01

    Response of soybean (Glycine max (L.) Merr.) to plant density has occupied a segment of agronomic research for most of the century. Genotype differences have been noted especially in response to planting date, lodging problems and water limitation. There is limited information on the physiological g

  8. Protein landmarks for diversity assessment in wheat genotypes

    African Journals Online (AJOL)

    jai ganesha

    1Department of Molecular Biology and Biotechnology, MPUAT Udaipur, Rajasthan, India. ... attributes exhibited the importance of seed storage as a marker system. .... were monomorphic for all genotypes. ..... bands, percent polymorphism Nei's gene diversity (h), Shannon's Information index (I), total genetic diversity.

  9. High-Throughput, Large-Scale SNP Genotyping: Bioinformatics Considerations

    OpenAIRE

    Margetic, Nino

    2004-01-01

    In order to provide a high-throughput, large-scale genotyping facility at the national level we have developed a set of inter-dependent information systems. A combination of commercial, publicly-available and in-house developed tools links a series of data repositories based both on flat files and relational databases providing an almost complete semi-automated pipeline.

  10. Childhood Pompe disease: clinical spectrum and genotype in 31 patients

    NARCIS (Netherlands)

    Capelle, C.I. van; Meijden, J.C. van der; Hout, J.M. van den; Jaeken, J.; Baethmann, M.; Voit, T.; Kroos, M.A.; Derks, T.G.; Rubio-Gozalbo, M.E.; Willemsen, M.A.A.P.; Lachmann, R.H.; Mengel, E.; Michelakakis, H.; Jongste, J.C. de; Reuser, A.J.; Ploeg, A.T. van der

    2016-01-01

    BACKGROUND: As little information is available on children with non-classic presentations of Pompe disease, we wished to gain knowledge of specific clinical characteristics and genotypes. We included all patients younger than 18 years, who had been evaluated at the Pompe Center in Rotterdam, the Net

  11. Childhood Pompe disease: Clinical spectrum and genotype in 31 patients

    NARCIS (Netherlands)

    C.I. van Capelle (Carine); J.C. van der Meijden (J.); J.M.P. van den Hout (Johanna); J. Jaeken; M. Baethmann; T. Voit; M.A. Kroos (Marian); T.G.J. Derks (Terry G J); M.E. Rubio-Gozalbo (Estela); M.A. Willemsen (Michél); R. Lachmann (Robin); E. Mengel; H. Michelakakis (Helen); J.C. de Jongste (Johan); A.J.J. Reuser (Arnold); A.T. van der Ploeg (Ans)

    2016-01-01

    textabstractBackground: As little information is available on children with non-classic presentations of Pompe disease, we wished to gain knowledge of specific clinical characteristics and genotypes. We included all patients younger than 18 years, who had been evaluated at the Pompe Center in Rotter

  12. Childhood Pompe disease : clinical spectrum and genotype in 31 patients

    NARCIS (Netherlands)

    van Capelle, C I; van der Meijden, J C; van den Hout, J M P; Jaeken, J; Baethmann, M; Voit, T; Kroos, M A; Derks, T G J; Rubio-Gozalbo, M E; Willemsen, M A; Lachmann, R H; Mengel, E; Michelakakis, H; de Jongste, J C; Reuser, A J J; van der Ploeg, A T

    2016-01-01

    BACKGROUND: As little information is available on children with non-classic presentations of Pompe disease, we wished to gain knowledge of specific clinical characteristics and genotypes. We included all patients younger than 18 years, who had been evaluated at the Pompe Center in Rotterdam, the Net

  13. Childhood Pompe disease: Clinical spectrum and genotype in 31 patients

    NARCIS (Netherlands)

    C.I. van Capelle (Carine); J.C. van der Meijden (J.); J.M.P. van den Hout (Johanna); J. Jaeken; M. Baethmann; T. Voit; M.A. Kroos (Marian); T.G.J. Derks (Terry G J); M.E. Rubio-Gozalbo (Estela); M.A. Willemsen (Michél); R. Lachmann (Robin); E. Mengel; H. Michelakakis (Helen); J.C. de Jongste (Johan); A.J.J. Reuser (Arnold); A.T. van der Ploeg (Ans)

    2016-01-01

    textabstractBackground: As little information is available on children with non-classic presentations of Pompe disease, we wished to gain knowledge of specific clinical characteristics and genotypes. We included all patients younger than 18 years, who had been evaluated at the Pompe Center in

  14. Childhood Pompe disease: clinical spectrum and genotype in 31 patients

    NARCIS (Netherlands)

    Capelle, C.I. van; Meijden, J.C. van der; Hout, J.M. van den; Jaeken, J.; Baethmann, M.; Voit, T.; Kroos, M.A.; Derks, T.G.; Rubio-Gozalbo, M.E.; Willemsen, M.A.A.P.; Lachmann, R.H.; Mengel, E.; Michelakakis, H.; Jongste, J.C. de; Reuser, A.J.; Ploeg, A.T. van der

    2016-01-01

    BACKGROUND: As little information is available on children with non-classic presentations of Pompe disease, we wished to gain knowledge of specific clinical characteristics and genotypes. We included all patients younger than 18 years, who had been evaluated at the Pompe Center in Rotterdam, the

  15. Childhood Pompe disease : clinical spectrum and genotype in 31 patients

    NARCIS (Netherlands)

    van Capelle, C I; van der Meijden, J C; van den Hout, J M P; Jaeken, J; Baethmann, M; Voit, T; Kroos, M A; Derks, T G J; Rubio-Gozalbo, M E; Willemsen, M A; Lachmann, R H; Mengel, E; Michelakakis, H; de Jongste, J C; Reuser, A J J; van der Ploeg, A T

    2016-01-01

    Background: As little information is available on children with non-classic presentations of Pompe disease, we wished to gain knowledge of specific clinical characteristics and genotypes. We included all patients younger than 18 years, who had been evaluated at the Pompe Center in Rotterdam, the

  16. Across-Family Marker-Assisted Selection Using Selective Genotyping Strategies in Dairy Cattle Breeding Schemes

    DEFF Research Database (Denmark)

    Ansari-Mahyari, S; Sørensen, A C; Lund, M S

    2008-01-01

    This study investigated the potential loss expected from marker-assisted selection (MAS) when only a proportion of animals are genotyped using several selective genotyping strategies. A population resembling a commercial dairy cattle population over 25 yr was simulated, and the most informative...

  17. FTO genotype and weight loss

    DEFF Research Database (Denmark)

    Livingstone, Katherine M; Celis-Morales, Carlos; Papandonatos, George D

    2016-01-01

    OBJECTIVE: To assess the effect of the FTO genotype on weight loss after dietary, physical activity, or drug based interventions in randomised controlled trials. DESIGN: Systematic review and random effects meta-analysis of individual participant data from randomised controlled trials. DATA SOURC...

  18. FTO genotype and weight loss

    DEFF Research Database (Denmark)

    Livingstone, Katherine M; Celis-Morales, Carlos; Papandonatos, George D;

    2016-01-01

    OBJECTIVE: To assess the effect of the FTO genotype on weight loss after dietary, physical activity, or drug based interventions in randomised controlled trials. DESIGN: Systematic review and random effects meta-analysis of individual participant data from randomised controlled trials. DATA SOURC...

  19. Microsatellite genotyping of carnation varieties

    NARCIS (Netherlands)

    Smulders, M.J.M.; Noordijk, Y.; Rus-Kortekaas, W.; Bredemeijer, G.M.M.; Vosman, B.

    2003-01-01

    A set of 11 sequence-tagged microsatellite markers for carnation (Dianthus caryophyllus) was developed using a DNA library enriched for microsatellites. Supplemented with three markers derived from sequence database entries, these were used to genotype carnation varieties using a semi-automated fluo

  20. Genotyping with TaqMAMA.

    Science.gov (United States)

    Li, Baohui; Kadura, Ibrahim; Fu, Dong-Jing; Watson, David E

    2004-02-01

    TaqMAMA combines the quantitative strengths of TaqMan with the allele-specific PCR of MAMA. In this article we develop TaqMAMA as a technique for screening human DNA samples for known genetic polymorphisms. In the first set of experiments, plasmids that model all types of genetic polymorphisms were used to understand the relationship between TaqMAMA primer/template mismatches and their strength of allelic discrimination. These data can be used to improve allelic discrimination of other primer extension genotyping methodologies through directed use of nucleotide mismatches. We used the data to derive a guide for TaqMAMA primer design and DNA strand selection for TaqMAMA genotyping assays. The guide was then used to develop assays for 11 known and novel human genetic polymorphisms. Genotypes were assigned quickly and accurately in all cases. TaqMAMA genotyping assays require minimal development time, have a high probability of success, produce reliable data that are straightforward to analyze, and are very cost-competitive.

  1. The Nonlinear Behavior of Vibrational Conveyers with Single-Mass Crank-and-Rod Exciters

    Directory of Open Access Journals (Sweden)

    G. Füsun Alışverişçi

    2012-01-01

    Full Text Available The single-mass, crank-and-rod exciters vibrational conveyers have a trough supported on elastic stands which are rigidly fastened to the trough and a supporting frame. The trough is oscillated by a common crank drive. This vibration causes the load to move forward and upward. The moving loads jump periodically and move forward with relatively small vibration. The movement is strictly related to vibrational parameters. This is applicable in laboratory conditions in the industry which accommodate a few grams of loads, up to those that accommodate tons of loading capacity. In this study I explore the transitional behavior across resonance, during the starting of a single degree of freedom vibratory system excited by crank-and-rod. A loaded vibratory conveyor is more safe to start than an empty one. Vibrational conveyers with cubic nonlinear spring and ideal vibration exciter have been analyzed analytically for primary and secondary resonance by the Method of Multiple Scales, and numerically. The approximate analytical results obtained in this study have been compared with the numerical results and have been found to be well matched.

  2. Predicting the mode of flow in pneumatic conveying systems-A review

    Institute of Scientific and Technical Information of China (English)

    Mark G.Jones; Kenneth C.Williams

    2008-01-01

    An initial prediction of the particulate mode of flow in pneumatic conveying systems is beneficial as this knowledge can provide clearer direction to the pneumatic conveying design process.There are three general categories of modes of flow,two dense flows:fluidised dense phase and plug flow,and dilute phase only.Detailed in this paper is a review of the commonly used and available techniques for predicting mode of flow.Two types of predictive charts were defined:basic particle parameter based (e.g.particle size and density) and air-particle parameter based (e.g.permeability and de-aeration).The basic particle techniques were found to have strong and weak areas of predictive ability,on the basis of a comparison with data from materials with known mode of flow capability.It was found that there was only slight improvement in predictive ability when the particle density was replaced by loose-poured bulk density in the basic parameter techniques.The air-particle-parameter-based techniques also showed well-defined regions for mode of flow prediction though the data set used was smaller than that for the basic techniques.Also,it was found to be difficult to utilise de-aeration values from different researchers and subsequently,an air-particle-based technique was developed which does not require any de-aeration parameter in its assessment.

  3. Conditions of dust sampling in pneumatic conveying through the horizontal pipeline

    Energy Technology Data Exchange (ETDEWEB)

    Olszowski, T.; Pospolita, J. [Technical University of Opole, Opole (Poland)

    2007-01-15

    The paper presents the results of examinations on the reciprocal relation between the isokinetic coefficient H of sampling, the quantity of measured mass concentration and the measuring usefulness of a dust sample aspired from the stream of solgas conveyed pneumatically in the horizontal pipeline. In gravimetric measurements of two-phase flows, the conditions under which aspiration is carried out, are extremely important. Available theoretical considerations and practical experiments usually concern aspiration in the vertical channels, where the manner of making measurements is universally known and it does not express any reservations. However, it is often necessary to conduct tests in the systems of horizontal conveying of solgas, where the conditions of taking a representative sample, even for the sake of the significant effect of the gravitational force, may vary from those suggested for measurements in the systems of vertical flow. The present paper also presents results of research on the selection of the isokinetic coefficient H in the case of aspiration in the horizontal channels. By means of a comparative experiment, one has found that the isokinetic coefficient, at which the results of the determined flow parameters are representative, has the optimal value of H= 1.05-1.09. In measurements, the gravimetric method was applied to taking a representative sample. Dust samples were quantitatively analyzed by means of a grain-size laser analyzer. The tested dust was shale coal.

  4. Tandem fluidized bed elutriator-Pneumatic classification of coal particles in a fluidized conveyer

    Institute of Scientific and Technical Information of China (English)

    Zhouen Liu; Yimin Xie; Yin Wang; Jian Yu; Shiqiu Gao; Guangwen Xu

    2012-01-01

    Coal moisture control (CMC) in coking process,which reduces coal moisture before loading the coal into the coke oven,allows substantial reduction in coking energy consumption and increase in coke productivity.The technology is seeking to integrate the coal classification,thus calling it the coal classifying moisture control (CCMC),to separate the fine and coarse coal fractions in the CMC process so that the downstream coal crushing can only treat the coarse fraction.CCMC adopts a reactor that integrates a fiuidized bottom section and a pneumatic conveying top section.The present work investigates the pneumatic classification behavior in a laboratory CCMC reactor with such a configuration by removing the coal fraction below a given size (e.g.,3.0 mm) from a 0 to 20,0 mm coal feed.The results show that the coal classification were dominated by the gas velocity in the top conveying section,and the required gas velocity for ensuring the maximal degree of removing a fine coal fraction could be roughly predicted by the Richardson and Zaki equation.The effect of bottom fluidization on the performance of CCMC is also examined.

  5. THE PSYCHOLOGICAL IMPACT OF PERSONALISED TEPESTRY INSIDE PUBLIC MEANS OF CONVEYANCE ON PASSENGER – STUDY CASE

    Directory of Open Access Journals (Sweden)

    TEODOR-STANCIU Silviu

    2017-05-01

    Full Text Available The present paper wishes to present the effects of the personalisation of tapestry inside public means of conveyance on the passengers’ psychology. Thus, a study case is presented, regarding a project from May 2016. The project regarded a certain theme personalisation of the seat tapestry inside a tram in Iasi following the diminishment of vandalising acts on means of conveyance involved in the cultural project Iasi – The City of Painted Trams, initiated TRAMCLUB IAȘI NGO. Beyond its cultural role, the project aimed at growing the quality of the travel experience, both at a physical level, as well as a psychological one, by carefully choosing the fabrics, the colours and the graphic personalisation of the tapestry. Also, the project wanted to discourage the acts of vandalism by involving the members of the civil society. The participation of the students of the Faculty of Visual Arts and Design in the project of interior personalisation of the public mean of transport led to a sense of respect and belonging among the passengers. On a long term the project has as objective the change of the negative perception regarding urban public transport and discouraging the use of the personal vehicle in the urban areas.

  6. Genotype × environment interaction effects on early fresh storage root yield and related traits in cassava

    Institute of Scientific and Technical Information of China (English)

    Robooni; Tumuhimbise; Rob; Melis; Paul; Shanahan; Robert; Kawuki

    2014-01-01

    Cassava(Manihot esculenta Crantz) is an important root crop worldwide. It exhibits substantial differential genotypic responses to varying environmental conditions, a phenomenon termed genotype × environment interaction(GEI). A significant GEI presents challenges in the selection of superior genotypes. The objective of this study was to examine the effect of genotype,environment and GEI on early fresh storage root yield(FSRY) and related traits in cassava.Accordingly, 12 cassava genotypes were evaluated in a randomised complete block design at three contrasting locations(Jinja, Nakasongola and Namulonge) in Uganda. Trials were harvested nine months after planting and the data collected were analysed using the additive main effects and multiplicative interaction(AMMI) model. The AMMI analysis of variance showed significant variation among genotypes for early FSRY and all other traits assessed.Locations were significantly different for all traits except for cassava brown streak disease root necrosis. The GEI effect was non-significant for early FSRY, but significant for other traits. For early FSRY, 48.5% of the treatment sum of squares was attributable to genotypes, 27.3% to environments, and 24.1% to GEI, indicating a predominance of genotypic variation for this trait.Predominance of genotypic variation was also observed for all the other traits. A majority of the genotypes(67%) had low interaction effects with locations for early FSRY, with Akena, CT2, CT4 and NASE14 being the most stable genotypes for the trait. Significant negative correlation was observed between cassava mosaic disease severity and early FSRY and storage root number,indicating significant negative effects of cassava mosaic disease on early FSRY and stability in cassava. The information generated will inform future selection initiatives for superior early-yielding cassava genotypes combining resistance to cassava mosaic and brown streak diseases in Uganda.

  7. Genotype × environment interaction effects on early fresh storage root yield and related traits in cassava

    Directory of Open Access Journals (Sweden)

    Robooni Tumuhimbise

    2014-10-01

    Full Text Available Cassava (Manihot esculenta Crantz is an important root crop worldwide. It exhibits substantial differential genotypic responses to varying environmental conditions, a phenomenon termed genotype × environment interaction (GEI. A significant GEI presents challenges in the selection of superior genotypes. The objective of this study was to examine the effect of genotype, environment and GEI on early fresh storage root yield (FSRY and related traits in cassava. Accordingly, 12 cassava genotypes were evaluated in a randomised complete block design at three contrasting locations (Jinja, Nakasongola and Namulonge in Uganda. Trials were harvested nine months after planting and the data collected were analysed using the additive main effects and multiplicative interaction (AMMI model. The AMMI analysis of variance showed significant variation among genotypes for early FSRY and all other traits assessed. Locations were significantly different for all traits except for cassava brown streak disease root necrosis. The GEI effect was non-significant for early FSRY, but significant for other traits. For early FSRY, 48.5% of the treatment sum of squares was attributable to genotypes, 27.3% to environments, and 24.1% to GEI, indicating a predominance of genotypic variation for this trait. Predominance of genotypic variation was also observed for all the other traits. A majority of the genotypes (67% had low interaction effects with locations for early FSRY, with Akena, CT2, CT4 and NASE14 being the most stable genotypes for the trait. Significant negative correlation was observed between cassava mosaic disease severity and early FSRY and storage root number, indicating significant negative effects of cassava mosaic disease on early FSRY and stability in cassava. The information generated will inform future selection initiatives for superior early-yielding cassava genotypes combining resistance to cassava mosaic and brown streak diseases in Uganda.

  8. Genotype × genotype interactions between the toxic cyanobacterium Microcystis and its grazer, the waterflea Daphnia

    Science.gov (United States)

    Lemaire, Veerle; Brusciotti, Silvia; van Gremberghe, Ineke; Vyverman, Wim; Vanoverbeke, Joost; De Meester, Luc

    2012-01-01

    Toxic algal blooms are an important problem worldwide. The literature on toxic cyanobacteria blooms in inland waters reports widely divergent results on whether zooplankton can control cyanobacteria blooms or cyanobacteria suppress zooplankton by their toxins. Here we test whether this may be due to genotype × genotype interactions, in which interactions between the large-bodied and efficient grazer Daphnia and the widespread cyanobacterium Microcystis are not only dependent on Microcystis strain or Daphnia genotype but are specific to genotype × genotype combinations. We show that genotype × genotype interactions are important in explaining mortality in short-time exposures of Daphnia to Microcystis. These genotype × genotype interactions may result in local coadaptation and a geographic mosaic of coevolution. Genotype × genotype interactions can explain why the literature on zooplankton–cyanobacteria interactions is seemingly inconsistent, and provide hope that zooplankton can contribute to the suppression of cyanobacteria blooms in restoration projects. PMID:25568039

  9. Study of Various HCV Genotypes in Patients Managing by Referral Clinic in Yazd Province

    Directory of Open Access Journals (Sweden)

    M Pedarzadeh

    2012-02-01

    Full Text Available Introduction: Determining virus genotype is a major factor for initiation of treatment because various kinds of genotypes need different antiviral drugs. Distribution of hepatitis C genotype in the word is variable in each country or even in each province. So we need to determine distribution pattern of hepatitis C genotype in our region. This study was performed in referral clinic of Yazd province. Methods: This was a descriptive study conducted between 2007 and 2010 on patients who were observed by Yazd referral clinic (the clinic for evaluating and management of patients with high risk behaviors. Ninety two patients who had positive RIBA test for hepatitis C infection were randomly selected and entered the study. Genotyping was performed using RT-PCR method. The primer was "universal primer HCV". Prevalence of various genotypes was analyzed according to gender, addiction and co- existence of HCV-HIV infection. Personal information and laboratory results were analyzed using SPSS. Results: The most common genotype in our study was genotype 3a (65% of cases, followed by 1a (35%. Globally 83% of patients were IV drug addict. Genotype distribution in these patients was similar to others. Fifteen patients had co-infection of HCV-HIV, and 47% of them were contaminated by genotype 1a and 53% with 3a. We could not find any patient contaminated with genotypes 2 or 4. No other genotypes except 1 & 3 or mixed genotype infection could be determined in our patients. Twenty three percent of patients had negative PCR despite positive RIBA test. This indicates that self improvement from acute hepatitis C infection in IV drug addict patients is similar to other people. Conclusion: According to the results of our study, about 2/3 of patients were infected by genotype 3a. This kind of chronic hepatitis C shows a better response to treatment comparing genotype 1a (or 1b with shorter duration and lower cost drugs. But despite higher incidence of genotype 3a, we

  10. 76 FR 79754 - Agency Information Collection Activities: Requests for Comments; Clearance of Renewed Approval of...

    Science.gov (United States)

    2011-12-22

    ... aircraft, engines, propellers, and spare parts locations. DATES: Written comments should be submitted by... of Renewed Approval of Information Collection: Recording of Aircraft Conveyances and Security... Aircraft Conveyances and Security Documents. Form Numbers: FAA Form 8050-41. Type of Review: Renewal of...

  11. EXAMINATION OF APPLICATED PNEUMATIC FLEXIBLE COUPLING AND ITS EFFECT ON MAGNITUDE OF VIBRATIONS IN DRIVE OF BELT CONVEYER

    Directory of Open Access Journals (Sweden)

    Robert GREGA

    2014-12-01

    Full Text Available In general, standard of ISO10816 is used for drives of transport mechanisms, determinating general criteria and principles for oscillations of machines. On the basis of evaluative criteria of the standard mentioned above, vibrations of a belt conveyer were measured. By experimental measurements it was found that vibrations of the belt conveyer evidently exceed limiting values defined by the standard. For an improvement of unacceptable state, a consequential solution was suggested. The application of pneumatic flexible coupling in drive of the belt conveyer was one of the possible solution. Consequential experimental measurements for verification of vibrations confirmed that application of pneumatic flexible coupling resulted in decrease of vibrations by 60%. Obtained values of vibrations were lower than limiting values of vibrations required by standard. We can clearly state that by proper application of pneumatic flexible coupling, a positive change in values of vibrations of the belt conveyer was reached, and therefore the belt conveyer meets the evaluating criteria according to the standard of ISO10816. This paper was written in the framework of Grant Project VEGA: „1/0688/12 – Research and application of universal regulation system in order to master the source of mechanical systems excitation”.

  12. FTO genotype and weight loss

    DEFF Research Database (Denmark)

    Livingstone, Katherine M; Celis-Morales, Carlos; Papandonatos, George D;

    2016-01-01

    OBJECTIVE: To assess the effect of the FTO genotype on weight loss after dietary, physical activity, or drug based interventions in randomised controlled trials. DESIGN: Systematic review and random effects meta-analysis of individual participant data from randomised controlled trials. DATA SOURCES...... well to dietary, physical activity, or drug based weight loss interventions and thus genetic predisposition to obesity associated with the FTO minor allele can be at least partly counteracted through such interventions. SYSTEMATIC REVIEW REGISTRATION: PROSPERO CRD42015015969.......: Ovid Medline, Scopus, Embase, and Cochrane from inception to November 2015. ELIGIBILITY CRITERIA FOR STUDY SELECTION: Randomised controlled trials in overweight or obese adults reporting reduction in body mass index, body weight, or waist circumference by FTO genotype (rs9939609 or a proxy) after...

  13. Two-mode clustering of genotype by trait and genotype by environment data

    NARCIS (Netherlands)

    Hageman, J.A.; Malosetti, M.; Eeuwijk, van F.A.

    2012-01-01

    In this paper, we demonstrate the use of two-mode clustering for genotype by trait and genotype by environment data. In contrast to two separate (one mode) clusterings on genotypes or traits/environments, two-mode clustering simultaneously produces homogeneous groups of genotypes and traits/environm

  14. Selection of common bean (Phaseolus vulgaris L.) genotypes using a genotype plus genotype x environment interaction biplot.

    Science.gov (United States)

    Corrêa, A M; Teodoro, P E; Gonçalves, M C; Santos, A; Torres, F E

    2016-08-05

    Recently, the genotype plus genotype x environment interaction (GGE) biplot methodology has been used to investigate genotype x environment interactions in several crop species, but has not been applied to the common bean (Phaseolus vulgaris L.) crop in Brazil. The aim of this study was to identify common bean genotypes that exhibit high grain yield and stability in the State of Mato Grosso do Sul, Brazil. We conducted 12 trials from 2000 to 2006 in the municipalities of Aquidauana and Dourados, and evaluated 13 genotypes in a randomized block design with three replications. Grain yield data were subjected to individual and joint analyses of variance. After analyzing the GE interaction, the adaptability and phenotypic stability of the common bean genotypes were analyzed using GGE biplot methodology. The genotypes EMGOPA-201, Xamego, and Aporé are recommended for growing in Mato Grosso do Sul, because they exhibited high grain yield and phenotypic stability.

  15. Nonlinear free vibration of single walled Carbone NanoTubes conveying fluid

    Directory of Open Access Journals (Sweden)

    Azrar A.

    2014-04-01

    Full Text Available Nonlinear free vibration of single-walled carbon nanotubes (CNTs conveying fluid are modeled and numerically simulated based on von Kármán geometric nonlinearity and Eringen’s nonlocal elasticity theory. The CNTs are modelled as nanobeams where the effects of transverse shear deformation and rotary inertia are considered within the framework of Timoshenko beam theory. The governing equations and boundary conditions are derived using the Hamilton’s principle and the nonlinear equation of motion is solved by the Galerkin’s method. The small scale parameter and the fluid-tube interaction effects on the dynamic behaviours of the CNT-fluid system as well as the instabilities induced by the fluid-velocity can be investigated. The critical fluid-velocity and frequency-amplitude relationships as well as the flutter and divergence instability types and the associated time responses are obtained based on the presented methodological approach.

  16. BIFURCATIONS OF A CANTILEVERED PIPE CONVEYING STEADY FLUID WITH A TERMINAL NOZZLE

    Institute of Scientific and Technical Information of China (English)

    Xu Jian; Huang Yuying

    2000-01-01

    This paper studies interactions of pipe and fluid and deals with bifurcations of a cantilevered pipe conveying a steady fluid, clamped at one end and having a nozzle subjected to nonlinear constraints at the free end. Either the nozzle parameter or the flow velocity is taken as a variable parameter. The discrete equations of the system are obtained by the Ritz-Galerkin method. The static stability is studied by the Routh criteria. The method of averaging is employed to investigate the stability of the periodic motions. A Runge-Kutta scheme is used to examine the analytical results and the chaotic motions. Three critical values are given. The first one makes the system lose the static stability by pitchfork bifurcation. The second one makes the system lose the dynamical stability by Hopf bifurcation. The third one makes the periodic motions of the system lose the stability by doubling-period bifurcation.

  17. Conveying the concept of movement in music: An event-related brain potential study.

    Science.gov (United States)

    Zhou, Linshu; Jiang, Cunmei; Wu, Yingying; Yang, Yufang

    2015-10-01

    This study on event-related brain potential investigated whether music can convey the concept of movement. Using a semantic priming paradigm, natural musical excerpts were presented to non-musicians, followed by semantically congruent or incongruent pictures that depicted objects either in motion or at rest. The priming effects were tested in object decision and implicit recognition tasks to distinguish the effects of automatic conceptual activation from response competition. Results showed that in both tasks, pictures that were incongruent to preceding musical excerpts elicited larger N400 than congruent pictures, suggesting that music can prime the representations of movement concepts. Results of the multiple regression analysis showed that movement expression could be well predicted by specific acoustic and musical features, indicating the associations between music per se and the processing of iconic musical meaning.

  18. Flow-Induced Vibration of A Nonlinearly Restrained Curved Pipe Conveying Fluid

    Institute of Scientific and Technical Information of China (English)

    王琳; 倪樵; 黄玉盈

    2004-01-01

    Investigated in this study is the flow-induced vibration of a nonlinearly restrained curved pipe conveying fluid. The nonlinear equation of motion is derived by equilibrium of forces on microelement of the system under consideration. The spatial coordinate of the system is discretized by DQM (differential quadrature method). On the basis of the boundary conditions, the dynamic equation is solved by the Newton-Raphson iteration method. The numerical solutions reveal several complex dynamic motions for the variation of the fluid velocity parameter, such as limit cycle motion, buckling and so on. The result obtained also shows that the sub parameter regions corresponding to the several motions may change with the variation of some parameters of the curved pipe. The present study supplies a new reference for investigating the nonlinear dynamic response of some other structures.

  19. FLOW-INDUCED INTERNAL RESONANCES AND MODE EXCHANGE IN HORIZONTAL CANTILEVERED PIPE CONVEYING FLUID (Ⅱ)

    Institute of Scientific and Technical Information of China (English)

    XU Jian; YANG Qian-biao

    2006-01-01

    Based on the nonlinear mathematical model of motion of a horizontally cantilevered rigid pipe conveying fluid, the 3:1 internal resonance induced by the minimum critical velocity is studied in details. With the detuning parameters of internal and primary resonances and the amplitude of the external disturbing excitation varying, the flow in the neighborhood of the critical flow velocity yields that some nonlinearly dynamical behaviors occur in the system such as mode exchange, saddle-node, Hopf and co-dimension 2 bifurcations. Correspondingly, the periodic motion losses its stability by jumping or flutter, and more complicated motions occur in the pipe under consideration.The good agreement between the analytical analysis and the numerical simulation for several parameters ensures the validity and accuracy of the present analysis.

  20. Terahertz Wave Propagation in a Nanotube Conveying Fluid Taking into Account Surface Effect

    Directory of Open Access Journals (Sweden)

    Bo Fang

    2013-06-01

    Full Text Available In nanoscale structure sizes, the surface-to-bulk energy ratio is high and the surface effects must be taken into account. Surface effect plays a key role in accurately predicting the vibration behavior of nanostructures. In this paper, the wave behaviors of a single-walled carbon nanotube (CNT conveying fluid are studied. The nonlocal Timoshenko beam theory is used and the surface effect is taken into account. It is found that the fluid can flow at a very high flow velocity and the wave propagates in the terahertz frequency range. The surface effects can significantly enhance the propagating frequency. This finding is different from the classical model where the surface effect is neglected.

  1. COMPUTATION OF MOMENTUM TRANSFER COEFFICIENT AND CONVEYANCE CAPACITY IN COMPOUND CHANNELS

    Institute of Scientific and Technical Information of China (English)

    WANG Hua; YANG Ke-jun; CAO Shu-you; LIU Xing-nian

    2007-01-01

    The momentum transfer coefficient is an important parameter for determining the apparent shear stress at the vertical interface between the main channel and its associated flood plains, the cross-sectional mean velocity and the discharge capacity in compound channels. In this article, under the Boussinesq assumption and through analyzing the characteristics of velocity distribution in the interacting region between the main channel and its associated flood plain, the expression of momentum transfer coefficient was theoretically derived. On the basis of force balance, the expression of vertical apparent shear stress was obtained. By applying the experimental data from the British Engineering Research Council Flood Channel Facility (SERC-FCF), the relationship between the momentum transfer coefficient with the relative depth and the ratio of the flood plain width to the main channel width, was established, And hence the conveyance capacity in compound channels was calculated with Liu and Dong's method. The computed results show that the momentum transfer coefficient relationship obtained is viable.

  2. Dynamics and Stability of Pinned-Clamped and Clamped-Pinned Cylindrical Shells Conveying Fluid

    Science.gov (United States)

    Misra, A. K.; Wong, S. S. T.; Païdoussis, M. P.

    2001-11-01

    The paper examines the dynamics and stability of fluid-conveying cylindrical shells having pinned-clamped or clamped-pinned boundary conditions, where ``pinned'' is an abbreviation for ``simply supported''. Flügge's equations are used to describe the shell motion, while the fluid-dynamic perturbation pressure is obtained utilizing the linearized potential flow theory. The solution is obtained using two methods - the travelling wave method and the Fourier-transform approach. The results obtained by both methods suggest that the negative damping of the clamped-pinned systems and positive damping of the pinned-clamped systems, observed by previous investigators for any arbitrarily small flow velocity, are simply numerical artefacts; this is reinforced by energy considerations, in which the work done by the fluid on the shell is shown to be zero. Hence, it is concluded that both systems are conservative.

  3. The voice conveys emotion in ten globalized cultures and one remote village in Bhutan.

    Science.gov (United States)

    Cordaro, Daniel T; Keltner, Dacher; Tshering, Sumjay; Wangchuk, Dorji; Flynn, Lisa M

    2016-02-01

    With data from 10 different globalized cultures and 1 remote, isolated village in Bhutan, we examined universals and cultural variations in the recognition of 16 nonverbal emotional vocalizations. College students in 10 nations (Study 1) and villagers in remote Bhutan (Study 2) were asked to match emotional vocalizations to 1-sentence stories of the same valence. Guided by previous conceptualizations of recognition accuracy, across both studies, 7 of the 16 vocal burst stimuli were found to have strong or very strong recognition in all 11 cultures, 6 vocal bursts were found to have moderate recognition, and 4 were not universally recognized. All vocal burst stimuli varied significantly in terms of the degree to which they were recognized across the 11 cultures. Our discussion focuses on the implications of these results for current debates concerning the emotion conveyed in the voice.

  4. Hepatitis C virus genotypes distribution and transmission risk factors in Luxembourg from 1991 to 2006

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    AIM: To analyze the Hepatitis C virus (HCV) genotype distribution and transmission risk factors in a population of unselected patients in Luxembourg. METHODS: Epidemiological information (gender, age and transmission risks) were collected from 802patients newly diagnosed for hepatitis C and living in Luxembourg, among whom 228 patients referred from prison. Genotyping using 5'noncoding (5'NC) sequencing was performed. We compared categorical data using the Fisher's exact F-test and odds ratios (OR) were calculated for evaluating association of HCV genotype and risk factors. RESULTS: The sex ratio was predominantly male (2.2) and individuals aged less than 40 years represented 49.6% of the population. Genotype l was predominant (53.4%) followed by genotype 3 (33%). Among risk factors, intravenous drug usage (IVDU) was the most frequently reported (71.4%) followed by medical-related transmission (17.6%) including haernophilia, transfusion recipients and other nosocomial reasons. Genotype 3was significantly associated to IVDU (OR=4.84,P<0.0001= whereas genotype l was significantly associated with a medical procedure (OR = 2.42,P<0.001=.The HCV genotype distribution from inmate patients differed significantly from the rest of the population (Chi-square test with four degrees of freedom, P<0.0001= with a higher frequency of genotype 3 (46.5% vs 27.5%) and a lower frequency of genotype 1 and 4 (44.7% vs 56.8%and 5.3% vs 9.6%,respectively).IVDU was nearly exclusively reported as a risk factor in prison. CONCLUSION: We report the first description of the HCV genotype distribution in Luxembourg. The repartition is similar to other European countries, with one of the highest European prevalence rates of genotype 3 (33%). Since serology screening became available in 1991,IVDU remains the most common way of HCV transmission in Luxembourg.

  5. Characterization of the eg95 gene family in the G6 genotype of Echinococcus granulosus.

    Science.gov (United States)

    Alvarez Rojas, Cristian A; Gauci, Charles G; Nolan, Matthew J; Harandi, Majid Fasihi; Lightowlers, Marshall W

    2012-06-01

    Cystic echinococcosis in humans and livestock animals is caused by infection with the cestode parasite Echinococcus granulosus. A number of genotypes of the parasite (designated G1-G10) are known to exist, with the genotype cluster G1-G3 and genotype G6 being responsible for the majority of humans infections. A recombinant vaccine has been developed for use in livestock to prevent infection with E. granulosus. The vaccine is based on the antigen EG95 which is expressed in the early larval stage (oncosphere) of the parasite. The EG95 antigen was originally cloned from the G1 genotype of E. granulosus and the protein has been found to be encoded by members of a small family of related genes in this genotype. Reliable information has not been available about the likely efficacy of the EG95 vaccine against genotypes other than G1. In this study, genomic DNA cloning techniques were used to characterize seven eg95-related gene fragments from the G6 genotype of E. granulosus. Three proteins appear to be encoded by these genes. Considerable differences were found between the EG95 related proteins from the G6 genotype compared with the EG95 protein from the G1 genotype. These differences suggest that the EG95-related proteins from the G6 genotype may have different antigenic epitopes compared with the current vaccine antigen. Data presented in this study have implications for future vaccine design and provide the information that would enable a G6 genotype-specific vaccine to be developed against E. granulosus, should this be considered a desirable addition to the available tools for control of cystic echinococcosis transmission.

  6. [National Database of Genotypes--ethical and legal issues].

    Science.gov (United States)

    Franková, Vera; Tesínová, Jolana; Brdicka, Radim

    2011-01-01

    National Database of Genotypes--ethical and legal issues The aim of the project National Database of Genotypes is to outline structure and rules for the database operation collecting information about genotypes of individual persons. The database should be used entirely for health care. Its purpose is to enable physicians to gain quick and easy access to the information about persons requiring specialized care due to their genetic constitution. In the future, another introduction of new genetic tests into the clinical practice can be expected thus the database of genotypes facilitates substantial financial savings by exclusion of duplicates of the expensive genetic testing. Ethical questions connected with the creating and functioning of such database concern mainly privacy protection, confidentiality of personal sensitive data, protection of database from misuse, consent with participation and public interests. Due to necessity of correct interpretation by qualified professional (= clinical geneticist), particular categorization of genetic data within the database is discussed. The function of proposed database has to be governed in concordance with the Czech legislation together with solving ethical problems.

  7. Progress in genotyping of Chlamydia trachomatis

    Institute of Scientific and Technical Information of China (English)

    Xia Yong; Xiong Likuan

    2014-01-01

    Objective To review the common genotyping techniques of Chlamydia trachomatis in terms of their principles,characteristics,applications and limitations.Data sources Data used in this review were mainly from English literatures of PubMed database.The search terms were "Chlamydia trachomatis" and "genotyping".Meanwhile,data from World Health Organization were also cited.Study selection Original articles and reviews relevant to present review's theme were selected.Results Different genotyping techniques were applied on different occasions according to their characteristics,especially in epidemiological studies worldwide,which pushed the study of Chlamydia trachomatis forward greatly.In addition,summaries of some epidemiological studies by genotyping were also included in this work for reference and comparison.Conclusions A clear understanding of common genotyping techniques could be helpful to genotype C.trachomatis more appropriately and effectively.Furthermore,more studies on the association of genotypes of Ch/amydia trachomatis with clinical manifestations should be performed.

  8. Most of the benefits from genomic selection can be realised by genotyping a proportion of selection candidates

    DEFF Research Database (Denmark)

    Henryon, Mark; Berg, Peer; Sørensen, Anders Christian

    2012-01-01

    We reasoned that there are diminishing marginal returns from genomic selection as the proportion of genotyped selection candidates is increased and breeding values based on a priori information are used to choose the candidates that are genotyped. We tested this premise by stochastic simulation...... of breeding schemes that resembled those used for pigs. We estimated rates of genetic gain and inbreeding realized by genomic selection in breeding schemes where candidates were phenotyped before genotyping and 0-100% of the candidates were genotyped based on predicted breeding values. Genotypings were...... allocated to male and female candidates at ratios of 100:0, 75:25, 50:50, 25:75, and 0:100. For genotyped candidates, a direct-genomic value (DGV) was sampled with reliabilities 0.10, 0.50, and 0.90. Ten sires and 300 dams with the highest breeding values after genotyping were selected at each generation...

  9. How Does It Feel Like? An Exploratory Study of a Prototype System to Convey Emotion through Haptic Wearable Devices

    Directory of Open Access Journals (Sweden)

    Antonella Mazzoni

    2015-08-01

    Full Text Available This paper reports on the design and implementation of a portable, hands-free, wearable haptic device that maps the emotions evoked by the music in a movie into vibrations, with the aim that hearing-impaired audience can get a sense of the emotional content carried by the music in specific movie scenes, and therefore feel (hear the music through the sense of touch. A study of the use of the technology is reported which found that high arousal and high valence were reliably conveyed through haptic patterns with high intensity and high frequency, whereas haptic patterns with low intensity and low frequency conveyed low arousal and low valence.

  10. Effectiveness of Using a Change Management Approach to Convey the Benefits of an Information Security Implementation to Technology Users

    Science.gov (United States)

    Bennett, Jeannine B.

    2012-01-01

    This study addressed the problems associated with users' understanding, accepting, and complying with requirements of security-oriented solutions. The goal of the research was not to dispute existing theory on IT project implementations, but rather to further the knowledge on the topic of technology user acceptance of security-oriented IT…

  11. Effectiveness of Using a Change Management Approach to Convey the Benefits of an Information Security Implementation to Technology Users

    Science.gov (United States)

    Bennett, Jeannine B.

    2012-01-01

    This study addressed the problems associated with users' understanding, accepting, and complying with requirements of security-oriented solutions. The goal of the research was not to dispute existing theory on IT project implementations, but rather to further the knowledge on the topic of technology user acceptance of security-oriented IT…

  12. High-throughput genotyping: practical considerations concerning the day-to-day application

    Science.gov (United States)

    McIndoe, Richard A.; Bumgarner, R. E.; Welti, Russ; Hood, Leroy

    1996-04-01

    Advances in high throughput genotyping protocols over the past few years have been remarkable. Most protocols developed to increase the throughput of genotyping rely on fluorescent based technologies for data acquisition and capture. In general, the number of genotypes per day quoted for these protocols are the result of extrapolations based on ideal situations. Here we present our experience with respect to the day to day problems of high throughput genotyping. Our laboratory is currently working on several genetic mapping projects in both mouse and man. For example, we are looking at the genetic basis for susceptibility to rheumatoid arthritis in a local native American tribe as well as a mouse animal model for the same disease. The machines used to collect gel image data are two Li- Cor infrared DNA sequencers adapted for genotyping. During the evolution of these projects, we have addressed issues concerning the tracking and flow of information from the initial extraction of DNA to the calling of the genotypes. In particular, we have focused on designing methods that are efficient, cost effective and can be easily taught to the technical staff. Computer programs have been written that record gel specific information (e.g. ID information), archive data and capture genotypes in a simple point and click environment. Instrumentation was purchased to ease the repetitive nature of sample allocation, reagent disbursement and gel loading. Using this system, we can produce genotype data on 96 individuals for 20 loci (1920 genotypes) in one day. Solutions to the overall flow of information at each of these junctions are discussed.

  13. Genetic relationships between selected Turkish mulberry genotypes (Morus spp) based on RAPD markers.

    Science.gov (United States)

    Orhan, E; Ercisli, S

    2010-11-03

    Mulberry (Morus spp, Moraceae) is an important horticultural crop in Turkey, which is one of the main world producers of mulberry fruit. We evaluated the genetic relationships among 26 mulberry genotypes selected for agronomic characteristics, using RAPD markers. A total of 367 DNA markers were generated with 34 random primers. The highest genetic similarity (0.80) was observed between Oltu58 (M. nigra) and Olur90 (M. nigra) genotypes. The genotypes Oltu3 (M. alba) and Oltu18 (M. rubra) were the most distant (0.36). We found that the RAPD technique is a useful tool to discriminate mulberry genotypes at both the intra- and interspecific level. This type of information will aid in accurate identification of useful genotypes for breeding programs.

  14. RAPD identification of Varroa destructor genotypes in Brazil and other regions of the Americas.

    Science.gov (United States)

    Guerra, J C V; Issa, M R C; Carneiro, F E; Strapazzon, R; Moretto, G

    2010-01-01

    The mite Varroa destructor is the main pest causing damage to apiculture worldwide. In Brazil and other parts of the world, where bees of African origin and their hybrids predominate, the bees can survive these mites without treatment. Studies have shown a correlation between the various genotypes of the mite and its fertility in different geographical regions. Information about mite genotype could be helpful in understanding the diverse effects and relationships of the mite with bees in different regions of the world. DNA analysis by RAPD technique has permitted identification of three distinct genotypes in the mite V. destructor, namely Russian, Japanese and Papua New Guinea. We found predominance of the Russian genotype in Brazil, along with other parts of South America, and in Cuba and Mexico. The Japanese genotype was exclusively found on Fernando de Noronha Island in Brazil.

  15. Bayesian approach increases accuracy when selecting cowpea genotypes with high adaptability and phenotypic stability.

    Science.gov (United States)

    Barroso, L M A; Teodoro, P E; Nascimento, M; Torres, F E; Dos Santos, A; Corrêa, A M; Sagrilo, E; Corrêa, C C G; Silva, F A; Ceccon, G

    2016-03-11

    This study aimed to verify that a Bayesian approach could be used for the selection of upright cowpea genotypes with high adaptability and phenotypic stability, and the study also evaluated the efficiency of using informative and minimally informative a priori distributions. Six trials were conducted in randomized blocks, and the grain yield of 17 upright cowpea genotypes was assessed. To represent the minimally informative a priori distributions, a probability distribution with high variance was used, and a meta-analysis concept was adopted to represent the informative a priori distributions. Bayes factors were used to conduct comparisons between the a priori distributions. The Bayesian approach was effective for selection of upright cowpea genotypes with high adaptability and phenotypic stability using the Eberhart and Russell method. Bayes factors indicated that the use of informative a priori distributions provided more accurate results than minimally informative a priori distributions.

  16. Identification of novel Coxiella burnetii genotypes from Ethiopian ticks.

    Directory of Open Access Journals (Sweden)

    Kinga M Sulyok

    Full Text Available BACKGROUND: Coxiella burnetii, the etiologic agent of Q fever, is a highly infectious zoonotic bacterium. Genetic information about the strains of this worldwide distributed agent circulating on the African continent is limited. The aim of the present study was the genetic characterization of C. burnetii DNA samples detected in ticks collected from Ethiopian cattle and their comparison with other genotypes found previously in other parts of the world. METHODOLOGY/PRINCIPAL FINDINGS: A total of 296 tick samples were screened by real-time PCR targeting the IS1111 region of C. burnetii genome and from the 32 positive samples, 8 cases with sufficient C. burnetii DNA load (Amblyomma cohaerens, n = 6; A. variegatum, n = 2 were characterized by multispacer sequence typing (MST and multiple-locus variable-number tandem repeat analysis (MLVA. One novel sequence type (ST, the proposed ST52, was identified by MST. The MLVA-6 discriminated the proposed ST52 into two newly identified MLVA genotypes: type 24 or AH was detected in both Amblyomma species while type 26 or AI was found only in A. cohaerens. CONCLUSIONS/SIGNIFICANCE: Both the MST and MLVA genotypes of the present work are closely related to previously described genotypes found primarily in cattle samples from different parts of the globe. This finding is congruent with the source hosts of the analyzed Ethiopian ticks, as these were also collected from cattle. The present study provides genotype information of C. burnetii from this seldom studied East-African region as well as further evidence for the presumed host-specific adaptation of this agent.

  17. Genotypes and antibiotic resistance of canine Campylobacter jejuni isolates.

    Science.gov (United States)

    Amar, Chantal; Kittl, Sonja; Spreng, David; Thomann, Andreas; Korczak, Bożena M; Burnens, André P; Kuhnert, Peter

    2014-01-10

    Campylobacter jejuni is the most important cause of bacterial gastroenteritis in humans. It is a commensal in many wild and domestic animals, including dogs. Whereas genotypes of human and chicken C. jejuni isolates have been described in some detail, only little information on canine C. jejuni genotypes is available. To gain more information on genotypes of canine C. jejuni and their zoonotic potential, isolates from routine diagnostics of diarrheic dogs as well as isolates of a prevalence study in non-diarrheic dogs were analyzed. Prevalence of thermophilic Campylobacter among non-diarrheic dogs was 6.3% for C. jejuni, 5.9% for Campylobacter upsaliensis and 0.7% for Campylobacter coli. The C. jejuni isolates were genotyped by multi locus sequence typing (MLST) and flaB typing. Resistance to macrolides and quinolones was genetically determined in parallel. Within the 134 genotyped C. jejuni isolates 57 different sequence types (ST) were found. Five STs were previously unrecognized. The most common STs were ST-48 (11.2%), ST-45 (10.5%) and ST-21 (6.0%). Whereas no macrolide resistance was found, 28 isolates (20.9%) were resistant to quinolones. ST-45 was significantly more prevalent in diarrheic than in non-diarrheic dogs. Within the common time frame of isolation 94% of the canine isolates had a ST that was also found in human clinical isolates. In conclusion, prevalence of C. jejuni in Swiss dogs is low but there is a large genetic overlap between dog and human isolates. Given the close contact between human and dogs, the latter should not be ignored as a potential source of human campylobacteriosis. Copyright © 2013 Elsevier B.V. All rights reserved.

  18. Nephele: genotyping via complete composition vectors and MapReduce

    Directory of Open Access Journals (Sweden)

    Mardis Scott

    2011-08-01

    Full Text Available Abstract Background Current sequencing technology makes it practical to sequence many samples of a given organism, raising new challenges for the processing and interpretation of large genomics data sets with associated metadata. Traditional computational phylogenetic methods are ideal for studying the evolution of gene/protein families and using those to infer the evolution of an organism, but are less than ideal for the study of the whole organism mainly due to the presence of insertions/deletions/rearrangements. These methods provide the researcher with the ability to group a set of samples into distinct genotypic groups based on sequence similarity, which can then be associated with metadata, such as host information, pathogenicity, and time or location of occurrence. Genotyping is critical to understanding, at a genomic level, the origin and spread of infectious diseases. Increasingly, genotyping is coming into use for disease surveillance activities, as well as for microbial forensics. The classic genotyping approach has been based on phylogenetic analysis, starting with a multiple sequence alignment. Genotypes are then established by expert examination of phylogenetic trees. However, these traditional single-processor methods are suboptimal for rapidly growing sequence datasets being generated by next-generation DNA sequencing machines, because they increase in computational complexity quickly with the number of sequences. Results Nephele is a suite of tools that uses the complete composition vector algorithm to represent each sequence in the dataset as a vector derived from its constituent k-mers by passing the need for multiple sequence alignment, and affinity propagation clustering to group the sequences into genotypes based on a distance measure over the vectors. Our methods produce results that correlate well with expert-defined clades or genotypes, at a fraction of the computational cost of traditional phylogenetic methods run on

  19. Characterization of the gas pulse frequency, amplitude and velocity in non-steady dense phase pneumatic conveying of powders

    Institute of Scientific and Technical Information of China (English)

    Kenneth C.Williams; Mark G.Jones; Ahmed A.Cenna

    2008-01-01

    Current modelling techniques for the prediction of conveying line pressure drop in low velocity dense phase pneumatic conveying are largely based on steady state analyses.Work in this area has been on-going for many years with only marginal improvements in the accuracy of prediction being achieved.Experimental and theoretical investigations undertaken by the authors suggest that the flow mechanisms involved in dense phase conveying are dominated by transient effects rather than those of steady state and are possibly the principal reasons for the limited improvement in accuracy.This paper reports on investigations on the pressure fluctuation behaviour in dense phase pneumatic conveying of powders.The pressure behaviour of the gas flow in the top section of the pipeline was found to exhibit pulsatile oscillations.In particular,the pulse velocity showed variation in magnitude while the frequency of the oscillations rarely exceeded 5 Hz.A wavelet analysis using the Daubechie 4 wavelet found that the amplitude of the oscillations increased along the pipeline.Furthermore,there was significant variation in gas pulse amplitude for different types of particulate material.

  20. The Concept of Happiness as Conveyed in Visual Representations: Analysis of the Work of Early Childhood Educators

    Science.gov (United States)

    Russo-Zimet, Gila; Segel, Sarit

    2014-01-01

    This research was designed to examine how early-childhood educators pursuing their graduate degrees perceive the concept of happiness, as conveyed in visual representations. The research methodology combines qualitative and quantitative paradigms using the metaphoric collage, a tool used to analyze visual and verbal aspects. The research…

  1. Determination of Effective Factors on Power Requirement and Conveying Capacity of a Screw Conveyor under Three Paddy Grain Varieties

    Directory of Open Access Journals (Sweden)

    Ezzatollah Askari Asli-Ardeh

    2012-01-01

    Full Text Available An experiment was conducted to investigate the effect of screw speed, inclination angle and variety on the required power, and conveying capacity of a screw conveyor. The experiment was designed with four levels of screw speed (600, 800, 1000, and 1200 rpm, five levels of inclination angle (0, 20, 40, 60, and 80∘, and three levels of variety (Alikazemi, Hashemi, and Khazar. The Length, diameter, and pitch of screw were 2, 0.78, and 0.5 m, respectively. The experimental design was a randomized complete block (RCB with factorial layout. Maximum and minimum power requirements of tested screw conveyor were 99.29 and 81.16 Watt corresponding to conveying capacity of 3.210 and 1.975 ton/hour obtained for khazar and Alikazemi varieties, respectively. The results indicated that as screw inclination angle increased from 0 to 80∘, the conveying capacity decreased significantly from 3.581 to 0.932 t/h. It can be concluded that the most conveying capacity was 4.955 t/h at tests with khazar variety and conveyor inclination angle zero degree.

  2. Determination of effective factors on power requirement and conveying capacity of a screw conveyor under three paddy grain varieties.

    Science.gov (United States)

    Askari Asli-Ardeh, Ezzatollah; Mohsenimanesh, Ahmad

    2012-01-01

    An experiment was conducted to investigate the effect of screw speed, inclination angle and variety on the required power, and conveying capacity of a screw conveyor. The experiment was designed with four levels of screw speed (600, 800, 1000, and 1200 rpm), five levels of inclination angle (0, 20, 40, 60, and 80°), and three levels of variety (Alikazemi, Hashemi, and Khazar). The Length, diameter, and pitch of screw were 2, 0.78, and 0.5 m, respectively. The experimental design was a randomized complete block (RCB) with factorial layout. Maximum and minimum power requirements of tested screw conveyor were 99.29 and 81.16 Watt corresponding to conveying capacity of 3.210 and 1.975 ton/hour obtained for khazar and Alikazemi varieties, respectively. The results indicated that as screw inclination angle increased from 0 to 80°, the conveying capacity decreased significantly from 3.581 to 0.932 t/h. It can be concluded that the most conveying capacity was 4.955 t/h at tests with khazar variety and conveyor inclination angle zero degree.

  3. Lectures in Advanced Mathematics: Why Students Might Not Understand What the Mathematics Professor Is Trying to Convey

    Science.gov (United States)

    Lew, Kristen; Fukawa-Connelly, Timothy Patrick; Mejía-Ramos , Juan Pablo; Weber, Keith

    2016-01-01

    We describe a case study in which we investigate the effectiveness of a lecture in advanced mathematics. We first videorecorded a lecture delivered by an experienced professor who had a reputation for being an outstanding instructor. Using video recall, we then interviewed the professor to determine the ideas that he intended to convey and how he…

  4. Lectures in Advanced Mathematics: Why Students Might Not Understand What the Mathematics Professor Is Trying to Convey

    Science.gov (United States)

    Lew, Kristen; Fukawa-Connelly, Timothy Patrick; Mejía-Ramos , Juan Pablo; Weber, Keith

    2016-01-01

    We describe a case study in which we investigate the effectiveness of a lecture in advanced mathematics. We first videorecorded a lecture delivered by an experienced professor who had a reputation for being an outstanding instructor. Using video recall, we then interviewed the professor to determine the ideas that he intended to convey and how he…

  5. 9 CFR 73.6 - Placarding means of conveyance and marking billing of shipments of treated scabby cattle or...

    Science.gov (United States)

    2010-01-01

    ... marking billing of shipments of treated scabby cattle or cattle exposed to scabies. 73.6 Section 73.6... INTERSTATE TRANSPORTATION OF ANIMALS (INCLUDING POULTRY) AND ANIMAL PRODUCTS SCABIES IN CATTLE § 73.6 Placarding means of conveyance and marking billing of shipments of treated scabby cattle or cattle exposed...

  6. 9 CFR 71.7 - Means of conveyance, facilities, premises, and cages and other equipment; methods of cleaning and...

    Science.gov (United States)

    2010-01-01

    ..., premises, and cages and other equipment; methods of cleaning and disinfecting. 71.7 Section 71.7 Animals... TRANSPORTATION OF ANIMALS (INCLUDING POULTRY) AND ANIMAL PRODUCTS GENERAL PROVISIONS § 71.7 Means of conveyance, facilities, premises, and cages and other equipment; methods of cleaning and disinfecting. (a) Railroad cars...

  7. 9 CFR 95.26 - Railroad cars, trucks, boats, aircraft and other means of conveyance, equipment or containers...

    Science.gov (United States)

    2010-01-01

    ... percent available chlorine) in the proportion of one pound to three gallons of water; or any one of the... and other means of conveyance, equipment or containers, yards, and premises; cleaning and disinfection... SANITARY CONTROL OF ANIMAL BYPRODUCTS (EXCEPT CASINGS), AND HAY AND STRAW, OFFERED FOR ENTRY INTO...

  8. Analytical predictions for vibration phase shifts along fluid-conveying pipes due to Coriolis forces and imperfections

    DEFF Research Database (Denmark)

    Thomsen, Jon Juel; Dahl, Jonas

    2010-01-01

    Resonant vibrations of a fluid-conveying pipe are investigated, with special consideration to axial shifts in vibration phase accompanying fluid flow and various imperfections. This is relevant for understanding elastic wave propagation in general, and for the design and trouble-shooting of phase...

  9. [First case of hepatitis B virus genotype H infection in Turkey].

    Science.gov (United States)

    Ural, Onur; Sayan, Murat; Akhan, Sıla; Sümer, Sua; Simşek, Funda

    2013-07-01

    Clinical studies reported from Turkey indicate that hepatitis B virus (HBV) genotype D is more prevalent than other genotypes. Epidemiological and clinical information on genotype H infection is currently limited. Genotype H infection is most likely due to its regional (Central and South America) prevalence throughout the world. The aim of this report is to present the first HBV genotype H infection in a chronic hepatitis B patient in Turkey. Laboratory findings of a 42 years old male patient admitted to our hospital revealed HBsAg (+), anti-HBs (-), HBeAg (-), anti-HBe (+), anti-HBc IgM (-), anti-HBc IgG (+), anti-HAV IgG (+), HBV-DNA: 5.689.776 IU/ml and high liver enzymes (ALT: 223 U/L, AST: 121 U/L). History of the patient indicated no risk factor (intravenous drug use, blood transfusion, suspicious sexual contact) related to HBV transmission. Since liver ultrasonography showed multiple hemangiomas, biopsy was performed and histologic activity index was found as 6/18 and fibrosis as 2/6, according to modified Knodell score system. HBV DNA isolated from the serum sample of the patient was amplified by polymerase chain reaction and polymerase gene segment of HBV was directly sequenced. UPGMA method was used for phylogenetic analysis, and the genotype of the virus was identified accordingly. The nucleotide sequence was compared to those from the international DNA data bank (GenBank). The genotyping of the patient revealed that the isolated HBV was genotype H. Treatment with tenofovir disoproxil fumarate was initiated and the patient responded to the treatment. This finding suggested that other HBV genotypes, except the predominant genotype D may also be in circulation in Turkey. In conclusion, detection of epidemiologic and molecular characteristics of HBV genotype H which is related to chronic hepatitis, seems to be necessary in order to better understand its circulation and progression around the world.

  10. Rotavirus genotypes in Belarus, 2008-2012.

    Science.gov (United States)

    Semeiko, Galina V; Yermalovich, Marina A; Poliakova, Nadezhda; Mijatovic-Rustempasic, Slavica; Kerin, Tara K; Wasley, Annemarie; Videbaek, Dovile; Gentsch, Jon R; Bowen, Michael D; Samoilovich, Elena O

    2014-12-01

    This study describes group A rotavirus (RVA) genotype prevalence in Belarus from 2008 to 2012. In 2008, data from 3 sites in Belarus (Brest, Mogilev, Minsk) indicated that G4P[8] was the predominant genotype. Data from Minsk (2008-2012) showed that G4P[8] was the predominant RVA genotype in all years except in 2011 when G3P[8] was most frequently detected. Other RVA genotypes common in Europe (G1P[8], G2P[4]) were detected each year of the study. This study reveals the dominance of genotype G4P[8] in Belarus and helps to establish the baseline genotype prevalence prior to RVA vaccine introduction in the country.

  11. Grain yield stability of early maize genotypes

    Directory of Open Access Journals (Sweden)

    Chitra Bahadur Kunwar

    2016-12-01

    Full Text Available The objective of this study was to estimate grain yield stability of early maize genotypes. Five early maize genotypes namely Pool-17, Arun1EV, Arun-4, Arun-2 and Farmer’s variety were evaluated using Randomized Complete Block Design along with three replications at four different locations namely Rampur, Rajahar, Pakhribas and Kabre districts of Nepal during summer seasons of three consecutive years from 2010 to 2012 under farmer’s fields. Genotype and genotype × environment (GGE biplot was used to identify superior genotype for grain yield and stability pattern. The genotypes Arun-1 EV and Arun-4 were better adapted for Kabre and Pakhribas where as pool-17 for Rajahar environments. The overall findings showed that Arun-1EV was more stable followed by Arun-2 therefore these two varieties can be recommended to farmers for cultivation in both environments.

  12. Frequency distribution of hepatitis C virus genotypes in different geographical regions of Pakistan and their possible routes of transmission

    Directory of Open Access Journals (Sweden)

    Riazuddin Sheikh

    2008-05-01

    Full Text Available Abstract Background Information regarding hepatitis C virus genotypes and subtypes circulating in Pakistan and various risk factors for their transmission are not known well. The specific objective of this study was to find out the frequency of various HCV genotypes present in well-characterized Pakistani HCV isolates and their possible routes of transmission. Methods A total of 3351 serum samples were tested by type-specific genotyping assay. Out of 3351 HCV RNA positive patients, 2039 were males and 1312 were females. As regard as genotyped samples, 2165 belonged to Punjab region, 823 belonged to N.W.F.P., 239 to Sindh and 124 patients were from Balochistan. Results Out of the total 3351 tested serum samples, type-specific PCR fragments were observed in 3150 (94.00% serum samples. The distribution of genotypes of the typeable samples as determined by this assay, was as follows: 1664 (49.05% genotype 3a; 592 (17.66% genotype 3b; 280 (8.35% genotype 1a; 252 (7.52% genotype 2a; 101 (3.01% genotype 1b; 50 (1.49% with genotype 4; 25 (0.75% with 3c; 27 (0.80% genotype 2b; 6 (0.18% with subtype 5a; 5 (0.15% genotype 1c; 4 (0.12% with subtype 6a; 3 (0.09% genotype 2c; and 161 (4.80% patients were infected with mixed infection. Two hundred and one (5.99% serum samples were found untypeable by the present genotyping system. More than 86% and 72% patients with genotypes 3a and 3b respectively had received multiple injections in past. For genotypes 1a and 1b the route of transmission was major/minor surgery along with unknown reasons. Majority of the cases with type 2a, 2b and indeterminate genotypes were sporadic. Mixed infections were common in thalassaemic patients. Conclusion The most common HCV genotype in Pakistan is type 3a. Regional difference in genotypes was observed only in Balochistan province of Pakistan. More than 70% of the cases were acquired in hospitals through reuse of needles/syringes and major/minor surgery that is very common in this

  13. Morphology and viability of castor bean genotypes pollen grains

    OpenAIRE

    Maria Selma Alves Silva Diamantino; Maria Angélica Pereira de Carvalho Costa; Taliane Leila Soares; Daniel Vieira Morais; Simone Alves Silva; Everton Hilo Souza

    2016-01-01

    The objective of this work was to characterize the morphology and viability of the pollen of 15 genotypes of castor bean (Ricinus communis L.) and to generate information that can assist in the selection of highly promising male parents for future use in genetic improvement programs aimed at producing seeds for oil extraction. Acetolysis and scanning electron microscopy was used to characterize the morphology of the pollen. The viability of the pollen grains was estimated by in vitro germinat...

  14. Morphology and viability of castor bean genotypes pollen grains

    OpenAIRE

    Diamantino,Maria Selma Alves Silva; Costa,Maria Angélica Pereira de Carvalho; Soares,Taliane Leila; Morais,Daniel Vieira; Silva,Simone Alves; Souza,Everton Hilo de

    2016-01-01

    ABSTRACT. The objective of this work was to characterize the morphology and viability of the pollen of 15 genotypes of castor bean (Ricinus communis L.) and to generate information that can assist in the selection of highly promising male parents for future use in genetic improvement programs aimed at producing seeds for oil extraction. Acetolysis and scanning electron microscopy was used to characterize the morphology of the pollen. The viability of the pollen grains was estimated by in vitr...

  15. Variability of leaf characteristics in different pedunculate oak genotypes (Ouercus robur L

    Directory of Open Access Journals (Sweden)

    Nikolić Nataša P.

    2006-01-01

    Full Text Available The objective of this study was to determine genotype influences on pedunculate oak's leaf traits: leaf area, specific leaf area (leaf area per unit of leaf mass, concentration of photosynthetic pigments, rates of photosynthesis and respiration, and nutrient concentrations (nitrogen phosphorus, potassium, calcium, and sodium. Leaf samples were taken from seventeen Q. robur genotypes originating from clonal seed orchard Banov Brod (Srem, Vojvodina, Serbia. Leaf area of the studied genotypes ranged from 248.4 to 628.8 cm2, SLA from 109.4 to 160.7 cm2 dry matter-1, rates of photosynthesis and respiration from 6.98 to 20.32 and from 6.73 to 14.65 µmol O2 m-2 s-1, respectively. The leaves of genotype 35 contained the highest concentration of photosynthetic pigments, while the lowest were recorded in genotype 29. The following pattern of nutrient concentrations was obtained for the studied genotypes: N>Ca>K>P>Na. Genotype variability of P K, Ca, and Na concentrations was more pronounced when compared with nitrogen. Estimated quantitative differences are the consequence of interaction of certain genotype and common environmental conditions for all trees. These results will provide information on intraspecific variation of the studied leaf characteristics.

  16. Echinococcus granulosus pig strain (G7 genotype) protoscoleces did not develop secondary hydatid cysts in mice.

    Science.gov (United States)

    Cucher, M; Mourglia-Ettlin, G; Prada, L; Costa, H; Kamenetzky, L; Poncini, C; Dematteis, S; Rosenzvit, M C

    2013-03-31

    Echinococcus granulosus, the aetiological agent of cystic hydatid disease, exists as a series of strains or genotypes which differ in biological features. Pig strain (G7 genotype) has been shown to differ from sheep strain (G1 genotype) in phenotypical characters such as intermediate host range, geographical distribution and rate of development of the adult worm. Since in vivo studies of different parasite genotypes can provide insights into host-parasite relationship we analysed for the first time the behaviour of E. granulosus G7 genotype protoscoleces in the murine experimental model. Our results show that G7 protoscoleces were unable to establish a regular infection in mice in contrast to G1 protoscoleces which developed intraperitoneal hydatid cysts. This inability was observed in co-infection experiments, i.e. even in the presence of a controlled immune response that allows G1 genotype protoscoleces establishment. In addition, the implantation of in vitro obtained E. granulosus G7 genotype microcysts resulted in a low percentage of hydatid cysts establishment. These results show a difference in the biological ability of both E. granulosus strains to develop secondary hydatid cysts in mice. We suggest that the comparison of infective and non infective genotypes of E. granulosus in the experimental host can be regarded as a new model to study the mechanisms of infection of Echinococcus spp. This knowledge could provide helpful information for the development of therapies, drugs and/or vaccines against cystic hydatid disease.

  17. Nonlocal vibration of Y-shaped CNT conveying nano-magnetic viscous fluid under magnetic field

    Directory of Open Access Journals (Sweden)

    A. Ghorbanpour Arani

    2015-06-01

    Full Text Available This study deals with the vibration and stability analysis of a Y-shaped single-walled carbon nanotube (SWCNT embedded in visco-Pasternak foundation and conveying nano-magnetic viscous fluid (NMF based on nonlocal elasticity theory and Euler–Bernoulli beam model. The fluid is two-phases due to the existence of magnetic nanoparticles which its volume fraction is much little in comparison with the base fluid where the influence of 2D magnetic field is taken into account. Also, Knudsen number is used to correct the velocity profile of fluid. The Galerkin method is applied to solve the equation of motion which is obtained by employing Hamilton’s principle. The detail parametric study is conducted, focusing on the combined effects of carbon nanotube and Y-shaped junction fitted at the downstream end, fluid velocity, Knudsen number and elastic medium. The results indicate that increasing the angle between centerline of the CNT and the downstream elbows decreases stability of system.

  18. Physiological responses of adult rainbow trout experimentally released through a unique fish conveyance device

    Science.gov (United States)

    Mesa, Matthew G.; Gee, Lisa P.; Weiland, Lisa K.; Christiansen, Helena E.

    2013-01-01

    We assessed the physiological stress responses (i.e., plasma levels of cortisol, glucose, and lactate) of adult Rainbow Trout Oncorhynchus mykiss at selected time intervals after they had passed a distance of 15 m through a unique fish conveyance device (treatment fish) or not (controls). This device differs from traditional fish pumps in two important ways: (1) it transports objects in air, rather than pumping them from and with water; and (2) it uses a unique tube for transport that has a series of soft, deformable baffles spaced evenly apart and situated perpendicular within a rigid, but flexible outer shell. Mean concentrations of the plasma constituents never differed (P > 0.05) between control and treatment fish at 0, 1, 4, 8, or 24 h after passage, and only minor differences were apparent between the different time intervals within a group. We observed no obvious injuries on any of our fish. Our results indicate that passage through this device did not severely stress or injure fish and it may allow for the rapid and safe movement of fish at hatcheries, sorting or handling facilities, or passage obstacles.

  19. Study on interparticle interaction for dry HGMS system using pneumatic conveyance

    Science.gov (United States)

    Nakai, Y.; Senkawa, K.; Mishima, F.; Akiyama, Y.; Nishijima, S.

    2011-11-01

    The interfusion of ferromagnetic impurities such as metallic wear debris has been one of the problems in the manufacturing process of powder products. To remove such debris, we developed high gradient magnetic separation system (HGMS) under dry process which has many advantages over the conventional HGMS system under wet process. In dry condition, interparticle forces such as van der Waals' force, the liquid bridge force and the electrostatic force contribute to aggregation of particles. This leads to the blockage of magnetic filter which is the major problem of dry HGMS system. To solve this problem, we developed dry HGMS system using pneumatic conveyance. In order to investigate the mechanism of powder aggregation in dry HGMS, it is necessary to simulate the behavior of particles considering interparticle interaction. Therefore we conducted the numerical analysis of the behavior of particles using discrete element method (DEM). As a result, the calculated values of repose angle showed a good agreement with measured value. On the basis of the results above, we succeeded in expressing the magnetic aggregation behavior which is one of the characteristics of the mixed powder containing ferromagnetic particles.

  20. An analytic solution of the static problem of inclined risers conveying fluid

    KAUST Repository

    Alfosail, Feras K.

    2016-05-28

    We use the method of matched asymptotic expansion to develop an analytic solution to the static problem of clamped–clamped inclined risers conveying fluid. The inclined riser is modeled as an Euler–Bernoulli beam taking into account its self-weight, mid-plane stretching, an applied axial tension, and the internal fluid velocity. The solution consists of three parts: an outer solution valid away from the two boundaries and two inner solutions valid near the two ends. The three solutions are then matched and combined into a so-called composite expansion. A Newton–Raphson method is used to determine the value of the mid-plane stretching corresponding to each applied tension and internal velocity. The analytic solution is in good agreement with those obtained with other solution methods for large values of applied tensions. Therefore, it can be used to replace other mathematical solution methods that suffer numerical limitations and high computational cost. © 2016 Springer Science+Business Media Dordrecht

  1. Surface Effect on Vibration of Y-SWCNTs Embedded on Pasternak Foundation Conveying Viscose Fluid

    Directory of Open Access Journals (Sweden)

    A. Ghorbanpour-Arani

    2015-01-01

    Full Text Available Surface and small scale effects on free transverse vibration of a single-walled carbon nanotube (SWCNT fitted with Y-junction at downstream end conveying viscose fluid is investigated in this article based on Euler-Bernoulli beam (EBB model. Nonlocal elasticity theory is employed to consider small scale effects due to its simplicity and efficiency. The energy method and Hamilton’s principle are used to establish the corresponding motion equation. To discretize and solve the governing equation of motion the Galerkin method is applied. Moreover, the small-size effect, angle of Y-junction, surface layer and Pasternak elastic foundation are studied in detail. Regarding fluid flow effects, it has been concluded that the fluid flow is an effective factor on increasing the instability of Y-SWCNT. Results show that increasing the angle of Y-junction enhances the flutter fluid velocity where the first and second modes are merged. This work could be used in medical application and design of nano-electromechanical devices such as measuring the density of blood flowing through such nanotubes.

  2. Conveyance Systems and Vegetative Growth in Peach (Prunuspersica (l. Batch high low Tropical Conditions

    Directory of Open Access Journals (Sweden)

    Luis Gómez

    2012-10-01

    Full Text Available Fruit trees known as deciduous species are native to the northern temperate zones that are well adapted to environmental conditions in regions of high Colombian Andean tropics, especially in the highlands boyacense where approximately 80% of the planted area. Conveyance systems (pruning of fruit plants are management practices which apply technical criteria for productivity in temperate climates producing countries. It is known in Boyacá, except traditional open vessel driving and other forms of effects, which is why the study was to evaluate six different types of driving on the vegetative growth of two peach varieties. We measured plant height, stem diameter, length of primary branches, percentage of lignification, and canopy projection based on each form (treatment. Was observed that the different types of pruning positively influenced with respect to the absolute control in the vegetative growth of the plants and the lignification of the primary branches, with the highest incidence in the range Rubidoux. The results also showed that the more a tree height growth and lignification of primary branches was husito.

  3. Centralized Gap Clearance Control for Maglev Based Steel-Plate Conveyance System

    Directory of Open Access Journals (Sweden)

    GUNEY, O. F.

    2017-08-01

    Full Text Available The conveyance of steel-plates is one of the potential uses of the magnetic levitation technology in industry. However, the electromagnetic levitation systems inherently show nonlinear feature and are unstable without an active control. Well-known U-shaped or E-shaped electromagnets cannot provide redundant levitation with multiple degrees of freedom. In this paper, to achieve the full redundant levitation of the steel plate, a quadruple configuration of U shaped electromagnets has been proposed. To resolve the issue of instability and attain more robust levitation, a centralized control algorithm based on a modified PID controller (I PD is designed for each degree of freedom by using the Manabe canonical polynomial technique. The model of the system is carried out using electromechanical energy conversion princi¬ples and verified by 3-D FEM analysis. An experimental bench is built up to test the system performance under trajectory tracking and external disturbance excitation. The results confirm the effectiveness of the proposed system and the control approach to obtain a full redundant levitation even in case of disturbances. The paper demonstrates the feasibility of the con¬veyance of steel plates by using the quadruple configuration of U-shaped electromagnets and shows the merits of I-PD controller both in stabilization and increased robust levitation.

  4. News "Speed Dating" for Scientists and Journalists: Conveying geoscience news in haiku-short form

    Science.gov (United States)

    Dybas, C. L.

    2006-12-01

    As Rachel Carson wrote in her 1956 book, The Sense of Wonder, it's important for everyone to develop an appreciation of "land, sea and sky." One of the best ways of getting the word out to the public about these realms is through the media. How do scientists capture the interest of the press in a society with a seemingly shorter and shorter attention span? Studies show that as the amount of scientific jargon and number of complex concepts in a news story increase, "filter-feeding" by the public of that news declines. When scientific jargon/complex concepts are few, the public "consumes" much more news. These results also apply to news story headlines: shorter headlines get the most interest. Based on these findings, one organization has started an experiment in "scientific speed dating": giving presenters three minutes to discuss results. They may have discovered something: news coverage of the research has been excellent. In today's world, conveying news about the geosciences in haiku-short form may be the best way of relating the wonders of land, sea and sky.

  5. Supercritical Nonlinear Vibration of a Fluid-Conveying Pipe Subjected to a Strong External Excitation

    Directory of Open Access Journals (Sweden)

    Yan-Lei Zhang

    2016-01-01

    Full Text Available Nonlinear vibration of a fluid-conveying pipe subjected to a transverse external harmonic excitation is investigated in the case with two-to-one internal resonance. The excitation amplitude is in the same magnitude of the transverse displacement. The fluid in the pipes flows in the speed larger than the critical speed so that the straight configuration becomes an unstable equilibrium and two curved configurations bifurcate as stable equilibriums. The motion measured from each of curved equilibrium configurations is governed by a nonlinear integro-partial-differential equation with variable coefficients. The Galerkin method is employed to discretize the governing equation into a gyroscopic system consisting of a set of coupled nonlinear ordinary differential equations. The method of multiple scales is applied to analyze approximately the gyroscopic system. A set of first-order ordinary differential equations governing the modulations of the amplitude and the phase are derived via the method. In the supercritical regime, the subharmonic, superharmonic, and combination resonances are examined in the presence of the 2 : 1 internal resonance. The steady-state responses and their stabilities are determined. The various jump phenomena in the amplitude-frequency response curves are demonstrated. The effects of the viscosity, the excitation amplitude, the nonlinearity, and the flow speed are observed. The analytical results are supported by the numerical integration.

  6. Longitudinal vibration and stability analysis of carbon nanotubes conveying viscous fluid

    Science.gov (United States)

    Oveissi, Soheil; Toghraie, Davood; Eftekhari, Seyyed Ali

    2016-09-01

    Nowadays, carbon nanotubes (CNT) play an important role in practical applications in fluidic devices. To this end, researchers have studied various aspects of vibration analysis of a behavior of CNT conveying fluid. In this paper, based on nonlocal elasticity theory, single-walled carbon nanotube (SWCNT) is simulated. To investigate and analyze the effect of internal fluid flow on the longitudinal vibration and stability of SWCNT, the equation of motion for longitudinal vibration is obtained by using Navier-Stokes equations. In the governing equation of motion, the interaction of fluid-structure, dynamic and fluid flow velocity along the axial coordinate of the nanotube and the nano-scale effect of the structure are considered. To solve the nonlocal longitudinal vibration equation, the approximate Galerkin method is employed and appropriate simply supported boundary conditions are applied. The results show that the axial vibrations of the nanotubesstrongly depend on the small-size effect. In addition, the fluid flowing in nanotube causes a decrease in the natural frequency of the system. It is obvious that the system natural frequencies reach zero at lower critical flow velocities as the wave number increases. Moreover, the critical flow velocity decreases as the nonlocal parameter increases.

  7. Contemplating Catastrophe: conveying the causes, effects, risks of and responses to global change

    Science.gov (United States)

    McCaffrey, M.; Berbeco, M.; Lahsen, M.

    2013-12-01

    Humans are changing nature and undermining the life supporting systems of the planet to an unprecedented extent, eroding more soil than all natural processes combined, fixing more nitrogen than all the bacteria on the planet, and substantially altering the land cover and chemistry of the atmosphere and waters. Yet, especially in the United States but also elsewhere, environmental awareness and policy action has been lackluster and hesitant due to a range of factors, including manufactured doubt and denial, psychological, cultural and economic investments in maintenance of status quo, and - when concern does exist - lack of knowledge about how to foster effective change. This paper will examine how recent research findings on human impacts on the planet are being conveyed to non-technical audiences and discuss challenges and opportunities to provide the public with the relevant knowledge and knowhow to address the risks of, and responses to global change. It will argue that a second-wave scientific literacy consisting in deeper understanding of the scientific process must be nurtured as part of a process to capacitate populations, especially youths, to navigate conflicting evidence and claims that surround many environmental threats. Such literacy must be fostered through 'learning conversations,' community and capacity-building, and integrated education, communication and outreach infusing science and solutions to foster a more effective approach to confronting potential catastrophe. 25 February 2013 at 16:30 Pacific Time

  8. Interaction between propulsion and levitation system in the HTSC-permanent magnet conveyance system

    Science.gov (United States)

    Ohashi, S.; Nishio, R.; Hashikawa, T.

    2010-11-01

    The magnetically levitated conveyance system has been developed. Pinning force of high temperature bulk superconductors (HTSC) are used for the levitation and the guidance of the carrier. The magnetic rail is set on the ground, and flux from the magnetic rail is pinned by HTSCs on the carrier body. To increase the load weight, the repulsive force of the permanent magnet is introduced. The hybrid levitation system is composed. The repulsive force by the permanent magnet between the load stage on the carrier and the magnetic rail on the ground is used to support the load weight. As the load stage is connected to the carrier body by the linear sliders, the mass of the load weight does not act on the carrier body. The interaction between the electromagnet and the permanent magnet under the load stage generates the propulsion force. The electromagnet is constructed by the air core coils, and excited only when the load stage passes. The interaction between the propulsion and the levitation system is investigated. Disturbance of the propulsion system on the levitation and the guidance force is measured. The results show the influence of the propulsion electromagnet on the pinning force is little, and this propulsion system works effectively.

  9. Basic Characteristics of the Propulsion System in the Permanent Magnet-HTSC Hybrid Magnetic Conveyance System

    Science.gov (United States)

    Ohashi, Shunsuke; Kumano, Daiki; Goto, Yasuyuki

    The Hybrid magnetically levitated transportation system has been developed. The magnetic rail is set on the ground, and the carrier with permanent magnets and high-Tc superconductors (HTSC) levitates on the rail. Repulsive force of permanent magnet is introduced to support load weight. Pinning force of the HTSC is used to support weight of the frame of the carrier and to achieve lateral stability of the carrier. In this paper, propulsion system of the conveyance system is studied. Propulsion function is installed on the carrier body. Magnetic gradient is used to get propulsion force. Propulsion force of the system is little. So propulsion rail system is introduced. Air core copper coils are installed on the magnetic rail. Interaction between current of these coils and permanent magnets on the carrier generates propulsion force. Enough propulsion force is given. Influence of the propulsion system on the levitation and guidance system is measured. Stability of levitation and guidance system is enough even when propulsion system is operated.

  10. Considerations over the floating speed of a particle in vacuum pneumatic conveying sytems in flour milling

    Directory of Open Access Journals (Sweden)

    Tanase Tanase

    2016-06-01

    Full Text Available The present paper is a theoretical study aiming for to assess the influence of the different factors such as deviation from the spherical form of a particle, specific mass load of the pneumatic conveying pipe and the report between the particle diameter and the pipe diameter, over the floating speed of a particle. For a non-spherical particle, the Magnus force is affecting the floating speed of the given particle by increasing or decreasing it. The equation deducted within the present study, describes the movement of a particle or a fluid swirl under the resultant force with emphasis on the evaluation of the nature and magnitude of the Magnus force. The same Magnus Force explains the movement of the swirls in fluids, as for the wind swirls (hurricane or water swirls. The next part of the study relate the report between the particle diameter and the pipe diameter as well as the specific loads of the pipe, to the same floating speed. A differentiation in denominating the floating speed is proposed as well as that for the non-spherical particle the floating speed should be a domain, rather than a single value.

  11. [Hepatitis B virus genotype E infection in Turkey: the detection of the first case].

    Science.gov (United States)

    Sayan, Murat; Sanlıdağ, Tamer; Akçalı, Sinem; Arıkan, Ayşe

    2014-10-01

    Hepatitis B virus (HBV) infection is a global major health problem. Currently, 10 genotypes (A-J) of hepatitis B virus (HBV) are identified based on the nucleic acid sequence heterogeneity, and these genotypes have been shown to have distinct geographic distribution. Reports of the previous studies indicated that the genotype D is the predominant type among hepatitis B patients in different regions of Turkey. However, recent studies indicated that other HBV genotypes are also seen with an increasing rate. Although epidemiological and clinical information on genotype E infection is currently limited, it is known that genotype E infection is common in West and Central Africa. In this report, the first case of HBV genotype E infection in Turkey was presented. A 22-year-old Nigerian male employee who resided in Manisa for five years was admitted to Celal Bayar University Hospital Manisa, Turkey, for his routine check-up. Since HBsAg was found positive, other HBV markers were tested with a repeated serum sample. Laboratory findings were as follows; HBsAg (+), anti-HBs (-), HBeAg (-), anti-HBe (+), anti-HBc (+), anti-HCV (-), anti-HIV (-), ALT: 44 U/L and AST: 45 U/L. HBV-DNA level was detected as 700 IU/ml by real-time PCR (Artus HBV QS RGQ Qiagen, Germany). HBV-DNA isolated from the serum sample of the patient was amplified by PCR and polymerase gene segment of HBV was directly sequenced. UPGMA method was used for phylogenetic analysis and Inno-LIPA HBV genotyping method (Innogenetics, Belgium) was performed to determine multiple HBV genotype infection. On the basis of those methods the genotype of the virus was identified as genotype E. The partial sequences of the HBV polymerase gene were loaded to the international DNA data bank (GenBank) for contribution to the global HBV surveillance. This report emphasized that besides genotype D the other HBV genotypes could be found in Turkey. Since the patient was an inactive HBsAg carrier before his residence in Turkey, this

  12. Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon

    Directory of Open Access Journals (Sweden)

    Hsin-Yuan Tsai

    2017-04-01

    Full Text Available Genomic selection uses genome-wide marker information to predict breeding values for traits of economic interest, and is more accurate than pedigree-based methods. The development of high density SNP arrays for Atlantic salmon has enabled genomic selection in selective breeding programs, alongside high-resolution association mapping of the genetic basis of complex traits. However, in sibling testing schemes typical of salmon breeding programs, trait records are available on many thousands of fish with close relationships to the selection candidates. Therefore, routine high density SNP genotyping may be prohibitively expensive. One means to reducing genotyping cost is the use of genotype imputation, where selected key animals (e.g., breeding program parents are genotyped at high density, and the majority of individuals (e.g., performance tested fish and selection candidates are genotyped at much lower density, followed by imputation to high density. The main objectives of the current study were to assess the feasibility and accuracy of genotype imputation in the context of a salmon breeding program. The specific aims were: (i to measure the accuracy of genotype imputation using medium (25 K and high (78 K density mapped SNP panels, by masking varying proportions of the genotypes and assessing the correlation between the imputed genotypes and the true genotypes; and (ii to assess the efficacy of imputed genotype data in genomic prediction of key performance traits (sea lice resistance and body weight. Imputation accuracies of up to 0.90 were observed using the simple two-generation pedigree dataset, and moderately high accuracy (0.83 was possible even with very low density SNP data (∼250 SNPs. The performance of genomic prediction using imputed genotype data was comparable to using true genotype data, and both were superior to pedigree-based prediction. These results demonstrate that the genotype imputation approach used in this study can

  13. Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon

    Science.gov (United States)

    Tsai, Hsin-Yuan; Matika, Oswald; Edwards, Stefan McKinnon; Antolín–Sánchez, Roberto; Hamilton, Alastair; Guy, Derrick R.; Tinch, Alan E.; Gharbi, Karim; Stear, Michael J.; Taggart, John B.; Bron, James E.; Hickey, John M.; Houston, Ross D.

    2017-01-01

    Genomic selection uses genome-wide marker information to predict breeding values for traits of economic interest, and is more accurate than pedigree-based methods. The development of high density SNP arrays for Atlantic salmon has enabled genomic selection in selective breeding programs, alongside high-resolution association mapping of the genetic basis of complex traits. However, in sibling testing schemes typical of salmon breeding programs, trait records are available on many thousands of fish with close relationships to the selection candidates. Therefore, routine high density SNP genotyping may be prohibitively expensive. One means to reducing genotyping cost is the use of genotype imputation, where selected key animals (e.g., breeding program parents) are genotyped at high density, and the majority of individuals (e.g., performance tested fish and selection candidates) are genotyped at much lower density, followed by imputation to high density. The main objectives of the current study were to assess the feasibility and accuracy of genotype imputation in the context of a salmon breeding program. The specific aims were: (i) to measure the accuracy of genotype imputation using medium (25 K) and high (78 K) density mapped SNP panels, by masking varying proportions of the genotypes and assessing the correlation between the imputed genotypes and the true genotypes; and (ii) to assess the efficacy of imputed genotype data in genomic prediction of key performance traits (sea lice resistance and body weight). Imputation accuracies of up to 0.90 were observed using the simple two-generation pedigree dataset, and moderately high accuracy (0.83) was possible even with very low density SNP data (∼250 SNPs). The performance of genomic prediction using imputed genotype data was comparable to using true genotype data, and both were superior to pedigree-based prediction. These results demonstrate that the genotype imputation approach used in this study can provide a cost

  14. Information adaptation the interplay between Shannon information and semantic information in cognition

    CERN Document Server

    Haken, Hermann

    2015-01-01

    This monograph demonstrates the interplay between Shannon information and semantic information in cognition. It shows that Shannon’s information acts as driving force for the formation of semantic information; and vice versa, namely, that semantic information participates in the formation of Shannonian information. The authors show that in cognition, Shannonian and semantic information are interrelated as two aspects of a cognitive process termed as information adaptation. In the latter the mind/brain adapts to the environment by the deflating and/or inflating of the information conveyed by the environment. In the process of information adaptation, quantitative variations in Shannon’s information entail different meanings while different meanings affect the quantity of information. The book illustrates the above conceptually and mathematically by reference to three cognitive processes: pattern recognition, face learning and the recognition of a moving object.

  15. eCOMPAGT – efficient Combination and Management of Phenotypes and Genotypes for Genetic Epidemiology

    Directory of Open Access Journals (Sweden)

    Specht Günther

    2009-05-01

    Full Text Available Abstract Background High-throughput genotyping and phenotyping projects of large epidemiological study populations require sophisticated laboratory information management systems. Most epidemiological studies include subject-related personal information, which needs to be handled with care by following data privacy protection guidelines. In addition, genotyping core facilities handling cooperative projects require a straightforward solution to monitor the status and financial resources of the different projects. Description We developed a database system for an efficient combination and management of phenotypes and genotypes (eCOMPAGT deriving from genetic epidemiological studies. eCOMPAGT securely stores and manages genotype and phenotype data and enables different user modes with different rights. Special attention was drawn on the import of data deriving from TaqMan and SNPlex genotyping assays. However, the database solution is adjustable to other genotyping systems by programming additional interfaces. Further important features are the scalability of the database and an export interface to statistical software. Conclusion eCOMPAGT can store, administer and connect phenotype data with all kinds of genotype data and is available as a downloadable version at http://dbis-informatik.uibk.ac.at/ecompagt.

  16. Phenotypic characterization and ERIC-PCR based genotyping of Paenibacillus larvae isolates recovered from American foulbrood outbreaks in honey bees from Italy.

    Science.gov (United States)

    Bassi, Stefano; Formato, Giovanni; Milito, Marcella; Trevisiol, Karin; Salogni, Cristian; Carra, Elena

    2015-03-01

    Paenibacillus larvae is the etiological agent of American foulbrood (AFB), a widespread and severe bacterial brood disease of honey bees. The genomic characterization of P. larvae strains by enterobacterial repetitive intergenic consensus-polymerase chain reaction (ERIC-PCR) is able to differentiate four genotypes (ERIC I, ERIC II, ERIC III, ERIC IV). The information on the presence of P. larvae ERIC genotypes worldwide is few. We have characterized P. larvae strains isolated in Italy from AFB outbreaks to obtain information on ERIC genotypes and phenotypes of the strains circulating in the country. A total of 117 P. larvae isolates from 115 AFB outbreaks occurring in 2008-2012 were subjected to phenotypic and genetic characterization. The genomic characterization allowed the identification of ERIC I and ERIC II genotypes. Examining the data of Northern and Central Italy separately it was noted that in Northern Italy most outbreaks were caused by the ERIC I genotype (78.6%), followed by the ERIC II genotype (18.6%) and by co-infections (ERIC I + ERIC II) (2.6%). In Central Italy, only outbreaks caused by the ERIC I genotype were observed. With regard to phenotypic characteristics all examined strains of ERIC II genotype fermented fructose while no strains of ERIC I genotype possessed this ability. Both P. larvae ERIC I and ERIC II genotypes were isolated from the AFB outbreaks, but ERIC II genotype was isolated only in Northern Italy. The fermentation of fructose seems to be a genotype-specific biochemical marker.

  17. Genotype-specific microsatellite (SSR) markers for the sugarcane germplasm in the Karst region of Guizhou, China

    Science.gov (United States)

    It is the first report on SSR-based molecular evaluation of genetic variability among sugarcane genotypes from the Karst region of China that provides useful information for local sugarcane improvement. Eighteen sugarcane genotypes including 13 active cultivars and five elite QT-series clones bred l...

  18. Cost-effectiveness of Cyp2d6 genotyping in older depressed patients, starting with nortriptyline therapy

    NARCIS (Netherlands)

    Berm, E.J.; Gout-Zwart, J.J.; Luttjeboer, J.; Maring, J.G.; Wilffert, B.; Postma, M.J.

    2015-01-01

    Objectives: Genotyping for the cytochrome P450-2D6 has the potency to predict differences in metabolism of nortriptyline. This information could optimize treatment. We explored if possible benefits could outweigh genotyping costs for Dutch depressed patients in clinical psychiatry. Methods: First, a

  19. "GenotypeColour™": colour visualisation of SNPs and CNVs

    Directory of Open Access Journals (Sweden)

    Magri Chiara

    2009-02-01

    Full Text Available Abstract Background The volume of data available on genetic variations has increased considerably with the recent development of high-density, single-nucleotide polymorphism (SNP arrays. Several software programs have been developed to assist researchers in the analysis of this huge amount of data, but few can rely upon a whole genome variability visualisation system that could help data interpretation. Results We have developed GenotypeColour™ as a rapid user-friendly tool able to upload, visualise and compare the huge amounts of data produced by Affymetrix Human Mapping GeneChips without losing the overall view of the data. Some features of GenotypeColour™ include visualising the entire genome variability in a single screenshot for one or more samples, the simultaneous display of the genotype and Copy Number state for thousands of SNPs, and the comparison of large amounts of samples by producing "consensus" images displaying regions of complete or partial identity. The software is also useful for genotype analysis of trios and to show regions of potential uniparental disomy (UPD. All information can then be exported in a tabular format for analysis with dedicated software. At present, the software can handle data from 10 K, 100 K, 250 K, 5.0 and 6.0 Affymetrix chips. Conclusion We have created a software that offers a new way of displaying and comparing SNP and CNV genomic data. The software is available free at http://www.med.unibs.it/~barlati/GenotypeColour and is especially useful for the analysis of multiple samples.

  20. Phenotypic and genotypic data integration and exploration through a web-service architecture

    Science.gov (United States)

    Nuzzo, Angelo; Riva, Alberto; Bellazzi, Riccardo

    2009-01-01

    Background Linking genotypic and phenotypic information is one of the greatest challenges of current genetics research. The definition of an Information Technology infrastructure to support this kind of studies, and in particular studies aimed at the analysis of complex traits, which require the definition of multifaceted phenotypes and the integration genotypic information to discover the most prevalent diseases, is a paradigmatic goal of Biomedical Informatics. This paper describes the use of Information Technology methods and tools to develop a system for the management, inspection and integration of phenotypic and genotypic data. Results We present the design and architecture of the Phenotype Miner, a software system able to flexibly manage phenotypic information, and its extended functionalities to retrieve genotype information from external repositories and to relate it to phenotypic data. For this purpose we developed a module to allow customized data upload by the user and a SOAP-based communications layer to retrieve data from existing biomedical knowledge management tools. In this paper we also demonstrate the system functionality by an example application of the system in which we analyze two related genomic datasets. Conclusion In this paper we show how a comprehensive, integrated and automated workbench for genotype and phenotype integration can facilitate and improve the hypothesis generation process underlying modern genetic studies. PMID:19828081

  1. Biomek®-3000 and GenPlex SNP Genotyping in Forensic Genetics

    DEFF Research Database (Denmark)

    Stangegaard, Michael; Tomas, Carmen; Hansen, Anders J.;

    2008-01-01

    Single nucleotide polymorphism genotyping provides a supplement for conventional short tandem repeats-based kits currently used for human identification. GenPlex (Applied Biosystems (AB), Foster City, CA) is an SNP-genotyping kit based on a multiplex of 48 informative, autosomal SNPs from...... but one sample. The results demonstrate that the Biomek-3000 can perform a series of complex reactions leading to highly consistent forensic genetic SNP-typing results Udgivelsesdato: 2008/10...

  2. A superconducting conveyer system using multiple bulk Y-Ba-Cu-O superconductors and permanent magnets

    Science.gov (United States)

    Kinoshita, T.; Koshizuka, N.; Nagashima, K.; Murakami, M.

    Developments of non-contact superconducting devices like superconducting magnetic levitation transfer and superconducting flywheel energy storage system have been performed based on the interactions between bulk Y-Ba-Cu-O superconductors and permanent magnets, in that the superconductors can stably be levitated without any active control. The performances of noncontact superconducting devices are dependent on the interaction forces like attractive forces and stiffness. In the present study, we constructed a non-contact conveyer for which the guide rails were prepared by attaching many Fe-Nd-B magnets onto an iron base plate. Along the translational direction, all the magnets were arranged as to face the same pole, and furthermore their inter-distance was made as small as possible. The guide rail has three magnet rows, for which the magnets were glued on the iron plate such that adjacent magnet rows have opposite poles like NSN. At the center row, the magnetic field at zero gap reached 0.61T, while the field strengths of two rows on the side edges were only 0.48T due to magnetic interactions among permanent magnets. We then prepared a cryogenic box made with FRP that can store several bulk Y-Ba-Cu-O superconductors 25 mm in diameter cooled by liquid nitrogen. It was found that the levitation forces and stiffness increased with increasing the number of bulk superconductors installed in the box, although the levitation force per unit bulk were almost the same. We also confirmed that these forces are dependent on the configuration of bulk superconductors.

  3. Experimental analysis of turbulence characteristics and flow conveyance effects in a vegetated channel

    Science.gov (United States)

    Termini, D.

    2009-04-01

    Natural rivers are characterized by a strong hydraulic and geomorphic complexity. Many studies conducted in this field (Malthus and Mumby, 2003; Muhar, 1996) show that the accurate estimation both of the river morphological changes and of local hydraulic characteristics of flow (i.e. the local flow velocities and water depths) is necessary for the restoration and protection of biodiversity. Vegetation is a key factor to analyze the interrelated system of flow, sediment transport, and morphodynamic in rivers (Tsujimoto, 1999; Maione et al., 2000). On one hand, some kind of species of vegetation affect the habitat conditions, being crucial to the maintenance of biodiversity (Larkum et al, 2004); on the other hand, effects of vegetation on flow velocity are significant and are of crucial importance for stabilizing sediments and reducing erosion along the channel. In particular, it has been generally agreed that vegetation increases flow resistance and modifies sediment transport and deposition (Tsujimoto et al., 1996; Yen 2002). The analysis of the hydrodynamic conditions in vegetated channels is complex because vegetation is flexible in varying degrees and it oscillates in the flow changing position. Furthermore, because of temporal changing of roughness due to natural vegetative growth, the response of vegetation to the flow can change in time. In this paper the flow over real flexible vegetation is experimentally studied. A 2D-ADV (Acoustic Doppler Velocimeter) is used to measure the local flow velocities, for different vegetation concentrations and varying the discharge and the flume slope. The influence of both vegetation concentration and depth/vegetation height ratio on the measured velocity profiles is analyzed. The comparison between the velocity distribution and the turbulence intensity distribution is also presented. The spectral analysis is operated in order to verify the formation of turbulence structures inside the vegetated layer and the flow conveyance

  4. Minimum pickup velocity (U{sub pu}) of nanoparticles in gas–solid pneumatic conveying

    Energy Technology Data Exchange (ETDEWEB)

    Anantharaman, Aditya [Nanyang Technological University, School of Chemical and Biomedical Engineering (Singapore); Ommen, J. Ruud van [Delft University of Technology, Department of Chemical Engineering (Netherlands); Chew, Jia Wei, E-mail: JChew@ntu.edu.sg [Nanyang Technological University, School of Chemical and Biomedical Engineering (Singapore)

    2015-12-15

    This paper is the first systematic study of the pneumatic conveying of nanoparticles. The minimum pickup velocity, U{sub pu}, of six nanoparticle species of different materials [i.e., silicon dioxide (SiO{sub 2}), aluminum oxide (Al{sub 2}O{sub 3}), and titanium dioxide (TiO{sub 2})] and surfaces (i.e., apolar and polar) was determined by the weight loss method. Results show that (1) due to relative lack of hydrogen bonding, apolar nanoparticles had higher mass loss values at the same velocities, mass loss curves with accentuated S-shaped profiles, and lower U{sub pu} values, (2) among the three species, SiO{sub 2}, which has the lowest Hamaker coefficient, exhibited the greatest discrepancy between apolar and polar surfaces with respect to both mass loss curves and U{sub pu} values, (3) U{sub mf,polar}/U{sub mf,apolar} was between 1 and 3.5 times that of U{sub pu,polar}/U{sub pu,apolar} due to greater extents of hydrogen bonding associated with U{sub mf}, (4) U{sub pu} values were at least an order-of-magnitude lower than that expected from the well-acknowledged U{sub pu} correlation (Kalman et al., Powder Technol 160:103–113, 2005) due to agglomeration, (5) although nanoparticles should be categorized as Zone III (Kalman et al. 2005) (or Geldart group C, Powder Technol 7:285–292, 1973), the nanoparticles, and primary and complex agglomerates agreed more with the Zone I (or Geldart group B) correlation.

  5. Fluid-structure interaction for nonlinear response of shells conveying pulsatile flow

    Science.gov (United States)

    Tubaldi, Eleonora; Amabili, Marco; Païdoussis, Michael P.

    2016-06-01

    Circular cylindrical shells with flexible boundary conditions conveying pulsatile flow and subjected to pulsatile pressure are investigated. The equations of motion are obtained based on the nonlinear Novozhilov shell theory via Lagrangian approach. The flow is set in motion by a pulsatile pressure gradient. The fluid is modeled as a Newtonian pulsatile flow and it is formulated using a hybrid model that contains the unsteady effects obtained from the linear potential flow theory and the pulsatile viscous effects obtained from the unsteady time-averaged Navier-Stokes equations. A numerical bifurcation analysis employs a refined reduced order model to investigate the dynamic behavior. The case of shells containing quiescent fluid subjected to the action of a pulsatile transmural pressure is also addressed. Geometrically nonlinear vibration response to pulsatile flow and transmural pressure are here presented via frequency-response curves and time histories. The vibrations involving both a driven mode and a companion mode, which appear due to the axial symmetry, are also investigated. This theoretical framework represents a pioneering study that could be of great interest for biomedical applications. In particular, in the future, a more refined model of the one here presented will possibly be applied to reproduce the dynamic behavior of vascular prostheses used for repairing and replacing damaged and diseased thoracic aorta in cases of aneurysm, dissection or coarctation. For this purpose, a pulsatile time-dependent blood flow model is here considered by applying physiological waveforms of velocity and pressure during the heart beating period. This study provides, for the first time in literature, a fully coupled fluid-structure interaction model with deep insights in the nonlinear vibrations of circular cylindrical shells subjected to pulsatile pressure and pulsatile flow.

  6. GAD65 haplodeficiency conveys resilience in animal models of stress-induced psychopathology

    Directory of Open Access Journals (Sweden)

    Iris eMüller

    2014-08-01

    Full Text Available GABAergic mechanisms are critically involved in the control of fear and anxiety, but their role in the development of stress-induced psychopathologies, including post-traumatic stress disorder (PTSD and mood disorders is not sufficiently understood. We studied these functions in two established mouse models of risk factors for stress-induced psychopathologies employing variable juvenile stress and/or social isolation. A battery of emotional tests in adulthood revealed the induction of contextually generalized fear, anxiety, hyperarousal and depression-like symptoms in these paradigms. These reflect the multitude and complexity of stress effects in human PTSD patients. With factor analysis we were able to identify parameters that reflect these different behavioral domains in stressed animals and thus provide a basis for an integrated scoring of affectedness more closely resembling the clinical situation than isolated parameters. To test the applicability of these models to genetic approaches we further tested the role of GABA using heterozygous mice with targeted mutation of the GABA synthesizing enzyme GAD65 (GAD65+/- mice, which show a delayed postnatal increase in tissue GABA content in limbic and cortical brain areas. Unexpectedly, GAD65(+/- mice did not show changes in exploratory activity regardless of the stressor type and were after the variable juvenile stress procedure protected from the development of contextual generalization in an auditory fear conditioning experiment. Our data demonstrate the complex nature of behavioral alterations in rodent models of stress-related psychopathologies and suggest that GAD65 haplodeficiency, likely through its effect on the postnatal maturation of GABAergic transmission, conveys resilience to some of these stress-induced effects.

  7. Rapid high-throughput genotyping of HBV DNA using a modified hybridization-extension technique.

    Science.gov (United States)

    Bao, Han; Zhao, Wenliang; Ruan, Banjun; Wang, Qing; Zhao, Jinrong; Lei, Xiaoying; Wang, Weihua; Liu, Yonglan; Sun, Jianbing; Xiang, An; Guo, Yanhai; Yan, Zhen

    2013-11-07

    China has the highest incidence of hepatitis B virus (HBV) infection worldwide. HBV genotypes have variable impacts on disease pathogenesis and drug tolerance. We have developed a technically simple and accurate method for HBV genotyping that will be applicable to pre-treatment diagnosis and individualized treatment. Multiple sequence alignments of HBV genomes from GenBank were used to design primers and probes for genotyping of HBV A through H. The hybridization was carried out on nitrocellulose (NC) membranes with probes fixed in an array format, which was followed by hybrid amplification by an extension step with DNA polymerase to reinforce the double-stranded DNA hybrids on the NC membrane and subsequent visualization using an avidin-biotin system. Genotyping results were confirmed by DNA sequencing and bioinformatics analysis using the National Center for Biotechnology Information genotyping database, and compared with results from the line probe assay. The data show that multiple sequence alignment defined a 630 bp region in the HBV PreS and S regions that was suitable for genotyping. All genotyping significant single nucleotides in the region were defined. Two-hundred-and-ninety-one HBV-positive serum samples from Northwest Chinese patients were genotyped, and the genotyping rate from the new modified hybridization-extension method was 100% compared with direct sequencing. Compared with line probe assay, the newly developed method is superior, featuring reduced reaction time, lower risk of contamination, and increased accuracy for detecting single nucleotide mutation. In conclusion, a novel hybridization-extension method for HBV genotyping was established, which represents a new tool for accurate and rapid SNP detection that will benefit clinical testing.

  8. Evaluating the impact of genotype errors on rare variant tests of association.

    Science.gov (United States)

    Cook, Kaitlyn; Benitez, Alejandra; Fu, Casey; Tintle, Nathan

    2014-01-01

    The new class of rare variant tests has usually been evaluated assuming perfect genotype information. In reality, rare variant genotypes may be incorrect, and so rare variant tests should be robust to imperfect data. Errors and uncertainty in SNP genotyping are already known to dramatically impact statistical power for single marker tests on common variants and, in some cases, inflate the type I error rate. Recent results show that uncertainty in genotype calls derived from sequencing reads are dependent on several factors, including read depth, calling algorithm, number of alleles present in the sample, and the frequency at which an allele segregates in the population. We have recently proposed a general framework for the evaluation and investigation of rare variant tests of association, classifying most rare variant tests into one of two broad categories (length or joint tests). We use this framework to relate factors affecting genotype uncertainty to the power and type I error rate of rare variant tests. We find that non-differential genotype errors (an error process that occurs independent of phenotype) decrease power, with larger decreases for extremely rare variants, and for the common homozygote to heterozygote error. Differential genotype errors (an error process that is associated with phenotype status), lead to inflated type I error rates which are more likely to occur at sites with more common homozygote to heterozygote errors than vice versa. Finally, our work suggests that certain rare variant tests and study designs may be more robust to the inclusion of genotype errors. Further work is needed to directly integrate genotype calling algorithm decisions, study costs and test statistic choices to provide comprehensive design and analysis advice which appropriately accounts for the impact of genotype errors.

  9. Influence of genotyping error in linkage mapping for complex traits – an analytic study

    Directory of Open Access Journals (Sweden)

    van Houwelingen Hans C

    2008-08-01

    Full Text Available Abstract Background Despite the current trend towards large epidemiological studies of unrelated individuals, linkage studies in families are still thoroughly being utilized as tools for disease gene mapping. The use of the single-nucleotide-polymorphisms (SNP array technology in genotyping of family data has the potential to provide more informative linkage data. Nevertheless, SNP array data are not immune to genotyping error which, as has been suggested in the past, could dramatically affect the evidence for linkage especially in selective designs such as affected sib pair (ASP designs. The influence of genotyping error on selective designs for continuous traits has not been assessed yet. Results We use the identity-by-descent (IBD regression-based paradigm for linkage testing to analytically quantify the effect of simple genotyping error models under specific selection schemes for sibling pairs. We show, for example, that in extremely concordant (EC designs, genotyping error leads to decreased power whereas it leads to increased type I error in extremely discordant (ED designs. Perhaps surprisingly, the effect of genotyping error on inference is most severe in designs where selection is least extreme. We suggest a genomic control for genotyping errors via a simple modification of the intercept in the regression for linkage. Conclusion This study extends earlier findings: genotyping error can substantially affect type I error and power in selective designs for continuous traits. Designs involving both EC and ED sib pairs are fairly immune to genotyping error. When those designs are not feasible the simple genomic control strategy that we suggest offers the potential to deliver more robust inference, especially if genotyping is carried out by SNP array technology.

  10. Hepatitis B virus genotypes:an overview

    Institute of Scientific and Technical Information of China (English)

    Mamun-Al Mahtab; Salimur Rahman; Mobin Khan; Fazal Karim

    2008-01-01

    BACKGROUND: Hepatitis B virus (HBV) infection is a major cause of mortality and morbidity globally. The quest continues to identify viral factors that inlfuence disease progression and severity as well as responses to treatment of HBV infection. Based on variations in HBV, the virus has been divided into a number of genotypes. DATA SOURCES: Review of published literature on HBV genotypes. RESULTS: HBV genotypes are likely to be important in determining the severity and progression of HBV-induced liver disease as well as responses to different anti-viral agents. CONCLUSION: Although HBV genotyping is not yet recommended for routine use in treating HBV infection, available data suggest that, as in hepatitis C virus infection, HBV genotyping is also likely to become a routine investigation for HBV treatment, perhaps in the not too distant future.

  11. The association of complex liver disorders with HBV genotypes prevalent in Pakistan

    Directory of Open Access Journals (Sweden)

    Qureshi Huma

    2007-11-01

    Full Text Available Abstract Background Genotyping of HBV is generally used for determining the epidemiological relationship between various virus strains and origin of infection mostly in research studies. The utility of genotyping for clinical applications is only beginning to gain importance. Whether HBV genotyping will constitute part of the clinical evaluation of Hepatitis B patients depends largely on the availability of the relevance of the evidence based information. Since Pakistan has a HBV genotype distribution which has been considered less virulent as investigated by earlier studies from south East Asian countries, a study on correlation between HBV genotypes and risk of progression to further complex hepatic infection was much needed Methods A total of 295 patients with HBsAg positive were selected from the Pakistan Medical Research Council's (PMRC out patient clinics. Two hundred and twenty six (77% were males, sixty nine (23% were females (M to F ratio 3.3:1. Results Out of 295 patients, 156 (53.2% had Acute(CAH, 71 (24.2% were HBV Carriers, 54 (18.4% had Chronic liver disease (CLD Hepatitis. 14 (4.7% were Cirrhosis and HCC patients. Genotype D was the most prevalent genotype in all categories of HBV patients, Acute (108, Chronic (39, and Carrier (53. Cirrhosis/HCC (7 were HBV/D positive. Genotype A was the second most prevalent with 28 (13% in acute cases, 12 (22.2% in chronics, 14 (19.7% in carriers and 5 (41.7 in Cirrhosis/HCC patients. Mixed genotype (A/D was found in 20 (12.8% of Acute patients, 3 (5.6% of Chronic and 4 (5.6% of carriers, none in case of severe liver conditions. Conclusion Mixed HBV genotypes A, D and A/D combination were present in all categories of patients except that no A/D combination was detected in severe conditions. Genotype D was the dominant genotype. However, genotype A was found to be more strongly associated with severe liver disease. Mixed genotype (A/D did not significantly appear to influence the clinical outcome.

  12. Toward fully automated genotyping: Genotyping microsatellite markers by deconvolution

    Energy Technology Data Exchange (ETDEWEB)

    Perlin, M.W.; Lancia, G.; See-Kiong, Ng [Carnegie Mellon Univ., Pittsburgh, PA (United States)

    1995-11-01

    Dense genetic linkage maps have been constructed for the human and mouse genomes, with average densities of 2.9 cM and 0.35 cM, respectively. These genetic maps are crucial for mapping both Mendelian and complex traits and are useful in clinical genetic diagnosis. Current maps are largely comprised of abundant, easily assayed, and highly polymorphic PCR-based microsatellite markers, primarily dinucleotide (CA){sub n} repeats. One key limitation of these length polymorphisms is the PCR stutter (or slippage) artifact that introduces additional stutter bands. With two (or more) closely spaced alleles, the stutter bands overlap, and it is difficult to accurately determine the correct alleles; this stutter phenomenon has all but precluded full automation, since a human must visually inspect the allele data. We describe here novel deconvolution methods for accurate genotyping that mathematically remove PCR stutter artifact from microsatellite markers. These methods overcome the manual interpretation bottleneck and thereby enable full automation of genetic map construction and use. New functionalities, including the pooling of DNAs and the pooling of markers, are described that may greatly reduce the associated experimentation requirements. 32 refs., 5 figs., 3 tabs.

  13. Identification of Mislabeled Samples and Sample Mix-ups in Genotype Data using Barcode Genotypes

    DEFF Research Database (Denmark)

    Have, Christian Theil; Appel, Emil Vincent Rosenbaum; Grarup, Niels

    2014-01-01

    barcode genotypes. To detect mislabeled samples we calculate the probability that the discordance between genotypes in the data and in the independent genotypes can be attributed to random (non-mislabeling) genotyping errors. To identify mix-ups we calculate the probability of identifying the set...... of identical genotypes between sample x and sample y by chance. Based on this we calculate a mix-up confidence score with penalization for introducing mismatches in the proposed new label and adjustment for independency among the genotypes. This confidence score is used to identify probable mix-ups.......Abstract—Undetected mislabeled samples may affect the results of genotype studies, particular when rare genetic variants are investigated. Mislabeled samples are often not detected during quality control and if they are detected, they are normally discarded due to a lack of a reliable method...

  14. DESIGNING AND CALCULATING OF THE AIR CONVEYING CHUTE%空气输送流槽的设计计算

    Institute of Scientific and Technical Information of China (English)

    李志华

    2001-01-01

    The air conveying chute is an equipment used to convey materials by compressed air. It is installed slopingly. The conyeying principle and structure is introduced, the designing and calculating way is pointed out. It is thought that it should be popularized and applied energetically in the industry of ruber and plastics.%空气输送流槽是一种利用空气和物料混合以压缩空气作为动力来输送物料的装置,倾斜安装。介绍了空气输送流槽的输送原理和结构。提出了设计计算空气输送流槽的方法。认为在橡胶、塑料工业中应大力推广应用空气输送流槽。

  15. 77 FR 5832 - Conveyance of Federally-Owned Mineral Interests; Renewal of OMB Control Number

    Science.gov (United States)

    2012-02-06

    ... information collection request, contact Marilyn A. Roth, at (202) 912-7345. Persons who use a...-8339, to leave a message for Ms. Roth. SUPPLEMENTARY INFORMATION: OMB regulations at 5 CFR 1320,...

  16. Genomic evaluations with many more genotypes

    Directory of Open Access Journals (Sweden)

    Wiggans George R

    2011-03-01

    Full Text Available Abstract Background Genomic evaluations in Holstein dairy cattle have quickly become more reliable over the last two years in many countries as more animals have been genotyped for 50,000 markers. Evaluations can also include animals genotyped with more or fewer markers using new tools such as the 777,000 or 2,900 marker chips recently introduced for cattle. Gains from more markers can be predicted using simulation, whereas strategies to use fewer markers have been compared using subsets of actual genotypes. The overall cost of selection is reduced by genotyping most animals at less than the highest density and imputing their missing genotypes using haplotypes. Algorithms to combine different densities need to be efficient because numbers of genotyped animals and markers may continue to grow quickly. Methods Genotypes for 500,000 markers were simulated for the 33,414 Holsteins that had 50,000 marker genotypes in the North American database. Another 86,465 non-genotyped ancestors were included in the pedigree file, and linkage disequilibrium was generated directly in the base population. Mixed density datasets were created by keeping 50,000 (every tenth of the markers for most animals. Missing genotypes were imputed using a combination of population haplotyping and pedigree haplotyping. Reliabilities of genomic evaluations using linear and nonlinear methods were compared. Results Differing marker sets for a large population were combined with just a few hours of computation. About 95% of paternal alleles were determined correctly, and > 95% of missing genotypes were called correctly. Reliability of breeding values was already high (84.4% with 50,000 simulated markers. The gain in reliability from increasing the number of markers to 500,000 was only 1.6%, but more than half of that gain resulted from genotyping just 1,406 young bulls at higher density. Linear genomic evaluations had reliabilities 1.5% lower than the nonlinear evaluations with 50

  17. 77 FR 3284 - Comment Request for Information Collection for the H-1B Technical Skills Training (H-1B) and the...

    Science.gov (United States)

    2012-01-23

    ... programs through an ETA-provided, Web- based Management Information System (MIS). Three outcome measures... training (OJT), classroom occupational training, contextualized learning, distance learning, and customized... are necessary for effective program management and conveying full and accurate information on the...

  18. Genotype phenotype classification of hepatocellular adenoma

    Institute of Scientific and Technical Information of China (English)

    Paulette Bioulac-Sage; Jean Frédéric Blanc; Sandra Rebouissou; Charles Balabaud; Jessica Zucman-Rossi

    2007-01-01

    Studies that compare tumor genotype with phenotype have provided the basis of a new histological/molecular classification of hepatocellular adenomas. Based on two molecular criteria (presence of a TCF1/HNF1α or β-catenin mutation), and an additional histological criterion (presence or absence of an inflammatory infiltrate), subgroups of hepatocellular adenoma can be defined and distinguished from focal nodular hyperplasia. Analysis of 96 hepatocellular adenomas performed by a French collaborative network showed that they can be divided into four broad subgroups: the first one is defined by the presence of mutations in TCF1 gene inactivating the hepatocyte nuclear factor 1 (HNF1α); the second by the presence of β-catenin activating mutations; the category without mutations of HNF1α or β-catenin is further divided into 2 subgroups depending on the presence or absence of inflammation. Therefore, the approach to the diagnosis of problematic benign hepatocytic nodules may be entering a new era directed by new molecular information. It is hoped that immunohistological tools will improve significantly diagnosis of liver biopsy in our ability to distinguish hepatocellular adenoma from focal nodular hyperplasia (FNH), and to delineate clinically meaningful entities within each group to define the best clinical management. The optimal care of patients with a liver nodule will benefit from the recent knowledge coming from molecular biology and the combined expertise of hepatologists, pathologists, radiologists, and surgeons.

  19. Anti-vibration Structures of Wheeled Child Conveyances%婴儿推车的减振结构

    Institute of Scientific and Technical Information of China (English)

    钱烈辉; 张学峰; 骆海青; 周绍强; 朱玲玲

    2015-01-01

    婴儿推车减振效果的好坏直接关系到乘坐儿童的安全。该文主要研究了婴儿推车的减振结构,分析了婴儿推车振动的来源与传递以及产生的实际振动强度;并通过对目前典型婴儿推车的振动加速度进行测试,证实采用车架阻尼结构推车的减振效果相比采用减振弹簧结构以及充气轮胎推车的减振效果要好。%The anti-vibration effect of wheeled child conveyances relates directly to the occupant safe.The anti-vibration structures of wheeled child conveyances were studied,and vibration sources,transmitting ways and actual vibration strength were analyzed.By measuring the vibration acceleration of typical wheeled child conveyances with different anti-vibration structures,it was verified that the anti-vibration effect of damping frame structure was better than that of damping spring and pneumatic tire.

  20. Turbulence as Information

    CERN Document Server

    Goldburg, W I

    2016-01-01

    A message of any sort can be regarded as a source of information. Claude. E. Shannon showed in the last century that information ("what we don't already know") is equivalent to the entropy as defined in statistical mechanics. A string of experimental observations is like a succession of words; they both convey information and can be characterized by their entropy. For the fluid flow measurements and simulations to be discussed here (pipe and soap film flow, GOY model), the entropy depends on controllable parameters such as the Reynolds number. The information theory approach is applicable to measurements of any type including those governed by intractable equations or systems where the governing equations are not known. This contribution is dedicated to the memory of Leo Kadanoff, an inspiring teacher and one of the most important scientific leaders of the last half century.

  1. Flavonoid profile of green asparagus genotypes.

    Science.gov (United States)

    Fuentes-Alventosa, J M; Jaramillo, S; Rodríguez-Gutiérrez, G; Cermeño, P; Espejo, J A; Jiménez-Araujo, A; Guillén-Bejarano, R; Fernández-Bolaños, J; Rodríguez-Arcos, R

    2008-08-27

    The determination of flavonoid profiles from different genotypes of triguero asparagus and their comparison to those from green asparagus commercial hybrids was the main goal of this study. The samples consisted of 32 commercial hybrids and 65 genotypes from the Huetor-Tajar population variety (triguero). The analysis of individual flavonoids by HPLC-DAD-MS has allowed the determination of eight naturally occurring flavonol derivatives in several genotypes of triguero asparagus. Those compounds included mono-, di-, and triglycosides of three flavonols, that is, quercetin, isorhamnetin, and kaempferol. The detailed analysis of the flavonoid profiles revealed significant differences among the distinct genotypes. These have been classified in three distinct groups as the result of a k-means clustering analysis, two of them containing both commercial hybrids and triguero asparagus and another cluster constituted by 21 genotypes of triguero asparagus, which contain several key flavonol derivatives able to differentiate them. Hence, the triglycosides tentatively identified as quercetin-3-rhamnosyl-rutinoside, isorhamnetin-3-rhamnosyl-rutinoside, and isorhamnetin-3-O-glucoside have been detected only in the genotypes grouped in the above-mentioned cluster. On the other hand, the compound tentatively identified as isorhamnetin-3-glucosyl-rutinoside was present in most genotypes of triguero asparagus, whereas it has not been detected in any of the commercial hybrids.

  2. HPV Genotyping 9G Membrane Test

    Directory of Open Access Journals (Sweden)

    Danishmalik Rafiq Sayyed

    2013-11-01

    Full Text Available The results of the genital human papillomavirus (HPV detection in 439 cervical samples by cervical cytology were compared with sequencing analysis and a newly developed HPV genotyping 9G membrane test. The excellent sensitivity and specificity of the HPV genotyping 9G membrane test was assured by a signal to noise ratio of more than 300 and a target hybridization to non-target hybridization ratio of 300 ~ 400 at 25 °C. The final results can be obtained in 29 min by simple loading of the hybridization and washing solutions and scanning the membranes without any drying steps or special handling. The 100% identical results of the HPV genotyping 9G membrane test with sequencing results in 439 clinical samples demonstrate significant clinical application for this test. HPV genotyping 9G membrane tests can identify and discriminate five HR-HPV genotypes which are prevalent in almost 87% of cervical cancer cases. Its simple handling makes the HPV genotyping 9G membrane test a very convenient platform for accurate HPV genotyping.

  3. Histoimmunogenetics Markup Language 1.0: Reporting next generation sequencing-based HLA and KIR genotyping.

    Science.gov (United States)

    Milius, Robert P; Heuer, Michael; Valiga, Daniel; Doroschak, Kathryn J; Kennedy, Caleb J; Bolon, Yung-Tsi; Schneider, Joel; Pollack, Jane; Kim, Hwa Ran; Cereb, Nezih; Hollenbach, Jill A; Mack, Steven J; Maiers, Martin

    2015-12-01

    We present an electronic format for exchanging data for HLA and KIR genotyping with extensions for next-generation sequencing (NGS). This format addresses NGS data exchange by refining the Histoimmunogenetics Markup Language (HML) to conform to the proposed Minimum Information for Reporting Immunogenomic NGS Genotyping (MIRING) reporting guidelines (miring.immunogenomics.org). Our refinements of HML include two major additions. First, NGS is supported by new XML structures to capture additional NGS data and metadata required to produce a genotyping result, including analysis-dependent (dynamic) and method-dependent (static) components. A full genotype, consensus sequence, and the surrounding metadata are included directly, while the raw sequence reads and platform documentation are externally referenced. Second, genotype ambiguity is fully represented by integrating Genotype List Strings, which use a hierarchical set of delimiters to represent allele and genotype ambiguity in a complete and accurate fashion. HML also continues to enable the transmission of legacy methods (e.g. site-specific oligonucleotide, sequence-specific priming, and Sequence Based Typing (SBT)), adding features such as allowing multiple group-specific sequencing primers, and fully leveraging techniques that combine multiple methods to obtain a single result, such as SBT integrated with NGS. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

  4. A simple and rapid approach for screening of SARS-coronavirus genotypes: an evaluation study

    Directory of Open Access Journals (Sweden)

    Jin Yongjie

    2005-10-01

    Full Text Available Abstract Background The Severe Acute Respiratory Syndrome (SARS was a newly emerged infectious disease which caused a global epidemic in 2002–2003. Sequence analysis of SARS-coronavirus isolates revealed that specific genotypes predominated at different periods of the epidemic. This information can be used as a footprint for tracing the epidemiology of infections and monitor viral evolution. However, direct sequencing analysis of a large number of clinical samples is cumbersome and time consuming. We present here a simple and rapid assay for the screening of SARS-coronavirus genotypes based on the use of fluorogenic oligonucleotide probes for allelic discrimination. Methods Thirty SARS patients were recruited. Allelic discrimination assays were developed based on the use of fluorogenic oligonucleotide probes (TaqMan. Genotyping of the SARS-coronavirus isolates obtained from these patients were carried out by the allelic discrimination assays and confirmed by direct sequencing. Results Genotyping based on the allelic discrimination assays were fully concordant with direct sequencing. All of the 30 SARS-coronavirus genotypes studied were characteristic of genotypes previously documented to be associated with the latter part of the epidemic. Seven of the isolates contained a previously reported major deletion but in patients not epidemiologically related to the previously studied cohort. Conclusion We have developed a simple and accurate method for the characterization and screening of SARS-coronavirus genotypes. It is a promising tool for the study of epidemiological relationships between documented cases during an outbreak.

  5. HCV genotype-specific correlation with serum markers: Higher predictability for genotype 4a

    Directory of Open Access Journals (Sweden)

    Asad Sultan

    2011-06-01

    Full Text Available Abstract Background Several factors have been proposed to assess the clinical outcome of HCV infection. The correlation of HCV genotypes to possible serum markers in clinical prediction is still controversial. The main objective of this study was to determine the existence of any correlation between HCV genotypes to viral load and different clinical serum markers. Methods We performed a prospective cross-sectional and observational study. About 3160 serum HCV RNA positive patients were chosen from 4020 randomly selected anti-HCV positive patients. Statistical analysis was performed using the SPSS 16 software package. ROC (receiver operating characteristics curves were used to compare diagnostic values of serum markers to predict genotypes. Results The most prevalent genotype was 3a (73.9% followed by 1a (10.7%, 4a (6.4% and 3b (6.1% in Pakistani population. No correlation was found between viral load and serum markers for genotype 3a in a large no. of sample (n = 2336. While significant correlation was observed between viral load and AST in genotype 3b, ALP with viral load and ALT for genotype 1a. Patients with genotype 4a showed a significant inverse correlation with viral load and Hb level and AST with ALP. For genotype 4a, AUC (area under the curve of ALT, ALP, AST, bilirubin, Hb level and viral load was 0.790, 0.763, 0.454, 0.664, 0.458 and 0.872 respectively. Conclusions In conclusion, there was a significant variable response of HCV genotypes with serum markers. Severity of disease is independent of serum marker level in genotype 3a, while the liver damage in genotype 4a may associate with viral cytopathic effect as well as the immune-mediated process. An index using six serum markers may correctly predict genotype 4a in patients with ≥75% accuracy.

  6. GENOTYPIC THERMOTOLERANCE IS ASSOCIATED WITH ELEVATED PRE-STRESS ANTIOXIDANT ENZYME ACTIVITY IN COTTON LEAVES AND PISTILS

    Science.gov (United States)

    Numerous studies have illustrated the need for antioxidant enzymes in acquired photosynthetic thermotolerance, but information on their possible role in promoting innate thermotolerance in either leaves or reproductive tissues is limited for cotton. We investigated the hypothesis that genotypic diff...

  7. Channel-conveyance capacity, channel change, and sediment transport in the lower Puyallup, White, and Carbon Rivers, western Washington

    Science.gov (United States)

    Czuba, Jonathan A.; Czuba, Christiana R.; Magirl, Chistopher S.; Voss, Frank D.

    2010-01-01

    Draining the volcanic, glaciated terrain of Mount Rainier, Washington, the Puyallup, White, and Carbon Rivers convey copious volumes of water and sediment down to Commencement Bay in Puget Sound. Recent flooding in the lowland river system has renewed interest in understanding sediment transport and its effects on flow conveyance throughout the lower drainage basin. Bathymetric and topographic data for 156 cross sections were surveyed in the lower Puyallup River system by the U.S. Geological Survey (USGS) and were compared with similar datasets collected in 1984. Regions of significant aggradation were measured along the Puyallup and White Rivers. Between 1984 and 2009, aggradation totals as measured by changes in average channel elevation were as much as 7.5, 6.5, and 2 feet on the Puyallup, White, and Carbon Rivers, respectively. These aggrading river sections correlated with decreasing slopes in riverbeds where the rivers exit relatively confined sections in the upper drainage and enter the relatively unconstricted valleys of the low-gradient Puget Lowland. Measured grain-size distributions from each riverbed showed a progressive fining downstream. Analysis of stage-discharge relations at streamflow-gaging stations along rivers draining Mount Rainier demonstrated the dynamic nature of channel morphology on river courses influenced by glaciated, volcanic terrain. The greatest rates of aggradation since the 1980s were in the Nisqually River near National (5.0 inches per year) and the White River near Auburn (1.8 inches per year). Less pronounced aggradation was measured on the Puyallup River and the White River just downstream of Mud Mountain Dam. The largest measured rate of incision was measured in the Cowlitz River at Packwood (5.0 inches per year). Channel-conveyance capacity estimated using a one-dimensional hydraulic model decreased in some river reaches since 1984. The reach exhibiting the largest decrease (about 20-50 percent) in channel-conveyance

  8. Genetic variability in wild genotypes of Passiflora cincinnata based on RAPD markers.

    Science.gov (United States)

    Cerqueira-Silva, C B M; Conceição, L D H C S; Santos, E S L; Cardoso-Silva, C B; Pereira, A S; Oliveira, A C; Corrêa, R X

    2010-12-21

    The genetic diversity and characteristics of commercial interest of Passiflora species make it useful to characterize wild germplasm, because of their potential use for fruit, ornamental and medicinal purposes. We evaluated genetic diversity, using RAPD markers, of 32 genotypes of Passiflora cincinnata collected from the wild in the region of Vitória da Conquista, Bahia, Brazil. Thirteen primers generated 95 polymorphic markers and only one monomorphic marker. The mean genetic distance between the genotypes estimated by the complement of the Dice index was 0.51 (ranging from 0.20-0.85), and genotype grouping based on the UPGMA algorithm showed wide variability among the genotypes. This type of information contributes to identification and conservation of the biodiversity of this species and for the identification of pairs of divergent individuals for maximum exploitation of existing variability.

  9. Hepatitis B virus genotypes circulating in Brazil: molecular characterization of genotype F isolates

    Directory of Open Access Journals (Sweden)

    Virgolino Helaine A

    2007-11-01

    Full Text Available Abstract Background Hepatitis B virus (HBV isolates have been classified in eight genotypes, A to H, which exhibit distinct geographical distributions. Genotypes A, D and F are predominant in Brazil, a country formed by a miscegenated population, where the proportion of individuals from Caucasian, Amerindian and African origins varies by region. Genotype F, which is the most divergent, is considered indigenous to the Americas. A systematic molecular characterization of HBV isolates from different parts of the world would be invaluable in establishing HBV evolutionary origins and dispersion patterns. A large-scale study is needed to map the region-by-region distribution of the HBV genotypes in Brazil. Results Genotyping by PCR-RFLP of 303 HBV isolates from HBsAg-positive blood donors showed that at least two of the three genotypes, A, D, and F, co-circulate in each of the five geographic regions of Brazil. No other genotypes were identified. Overall, genotype A was most prevalent (48.5%, and most of these isolates were classified as subgenotype A1 (138/153; 90.2%. Genotype D was the most common genotype in the South (84.2% and Central (47.6% regions. The prevalence of genotype F was low (13% countrywide. Nucleotide sequencing of the S gene and a phylogenetic analysis of 32 HBV genotype F isolates showed that a great majority (28/32; 87.5% belonged to subgenotype F2, cluster II. The deduced serotype of 31 of 32 F isolates was adw4. The remaining isolate showed a leucine-to-isoleucine substitution at position 127. Conclusion The presence of genotypes A, D and F, and the absence of other genotypes in a large cohort of HBV infected individuals may reflect the ethnic origins of the Brazilian population. The high prevalence of isolates from subgenotype A1 (of African origin indicates that the African influx during the colonial slavery period had a major impact on the circulation of HBV genotype A currently found in Brazil. Although most genotype F

  10. Assessment of the association between GSTM1 null genotype and risk of type 2 diabetes.

    Science.gov (United States)

    Yi, Ran; Liu, Bin; Dong, Qi

    2013-06-01

    Many studies have investigated the association between Glutathione S-Transferase M1 (GSTM1) null genotype and risk of diabetes mellitus, but the impact of GSTM1 null genotype on diabetes mellitus is unclear owing to the obvious inconsistence among those studies. This study aimed to quantify the strength of association between GSTM1 null genotype and risk of diabetes mellitus. We searched the PubMed, Embase and Wangfang databases for studies relating the association between GSTM1 null genotype and risk of diabetes mellitus. We estimated summary odds ratio (OR) with their 95 % confidence interval (95 % CI) to assess the association. Subgroup analyses were performed by type of diabetes and ethnicity. 10 case-control studies with 7, 054 subjects were included into this meta-analysis. Meta-analysis of total 10 studies showed GSTM1 null genotype was associated increased risk of diabetes mellitus (OR = 1.59, 95 % CI 1.14-2.22, P = 0.007). Subgroup analyses by type of diabetes mellitus suggested GSTM1 null genotype was associated increased risk of type 2 diabetes (OR = 1.90, 95 % CI 1.37-2.64, P null genotype and increased risk of type 2 diabetes. The cumulative meta-analyses showed a trend of obvious association between GSTM1 null genotype and risk of type 2 diabetes as information accumulated. No evidence of publication bias was observed. Thus, evidence from current meta-analysis suggests an association between GSTM1 null genotype and risk of type 2 diabetes.

  11. A comparison of different algorithms for phasing haplotypes using Holstein cattle genotypes and pedigree data.

    Science.gov (United States)

    Miar, Younes; Sargolzaei, Mehdi; Schenkel, Flavio S

    2017-04-01

    Phasing genotypes to haplotypes is becoming increasingly important due to its applications in the study of diseases, population and evolutionary genetics, imputation, and so on. Several studies have focused on the development of computational methods that infer haplotype phase from population genotype data. The aim of this study was to compare phasing algorithms implemented in Beagle, Findhap, FImpute, Impute2, and ShapeIt2 software using 50k and 777k (HD) genotyping data. Six scenarios were considered: no-parents, sire-progeny pairs, sire-dam-progeny trios, each with and without pedigree information in Holstein cattle. Algorithms were compared with respect to their phasing accuracy and computational efficiency. In the studied population, Beagle and FImpute were more accurate than other phasing algorithms. Across scenarios, phasing accuracies for Beagle and FImpute were 99.49-99.90% and 99.44-99.99% for 50k, respectively, and 99.90-99.99% and 99.87-99.99% for HD, respectively. Generally, FImpute resulted in higher accuracy when genotypic information of at least one parent was available. In the absence of parental genotypes and pedigree information, Beagle and Impute2 (with double the default number of states) were slightly more accurate than FImpute. Findhap gave high phasing accuracy when parents' genotypes and pedigree information were available. In terms of computing time, Findhap was the fastest algorithm followed by FImpute. FImpute was 30 to 131, 87 to 786, and 353 to 1,400 times faster across scenarios than Beagle, ShapeIt2, and Impute2, respectively. In summary, FImpute and Beagle were the most accurate phasing algorithms. Moreover, the low computational requirement of FImpute makes it an attractive algorithm for phasing genotypes of large livestock populations. Copyright © 2017 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

  12. Counsel the genotype, treat the phenotype

    NARCIS (Netherlands)

    van der Zwaag, Paul A.; van Tintelen, J. Peter

    2011-01-01

    This editorial refers to 'Novel correlations between the genotype and the phenotype of hypertrophic and dilated cardiomyopathy: results from the German Competence Network Heart Failure' by S. Waldmuller et al., published in this issue on pages 1185-1192.

  13. Global distribution of novel rhinovirus genotype

    DEFF Research Database (Denmark)

    Briese, Thomas; Renwick, Neil; Venter, Marietjie

    2008-01-01

    Global surveillance for a novel rhinovirus genotype indicated its association with community outbreaks and pediatric respiratory disease in Africa, Asia, Australia, Europe, and North America. Molecular dating indicates that these viruses have been circulating for at least 250 years Udgivelsesdato...

  14. Global distribution of novel rhinovirus genotype

    DEFF Research Database (Denmark)

    Briese, Thomas; Renwick, Neil; Venter, Marietjie

    2008-01-01

    Global surveillance for a novel rhinovirus genotype indicated its association with community outbreaks and pediatric respiratory disease in Africa, Asia, Australia, Europe, and North America. Molecular dating indicates that these viruses have been circulating for at least 250 years....

  15. HPV genotypes concordance between sex partners.

    Science.gov (United States)

    Benevolo, M; Mottolese, M; Marandino, F; Carosi, M; Diodoro, M G; Sentinelli, S; Visca, P; Rollo, F; Mariani, L; Vocaturo, G; Sindico, R; Di Giannuario, D; Perrone Donnorso, R; Pellicciotta, M; Vocaturo, A

    2007-12-01

    The HPV genotype concordance in the sexual couples could support the sexual viral transmission of HPV infection. The present study contains a case-report of a stable Italian sex couple harbouring the same five HPV genotypes in their genital samples. The female partner, affected by vulvar condilomatosis, evidenced positivity in her cervicovaginal scraping with high risk HPV DNA Hybrid Capture 2 test and was negative at liquid-based performed Pap Test and at colposcopic examination. The male partner was clinically healthy regarding his external genitalia. In both male and female genital scrapings, the following HPV genotypes were detected by means of a PCR-based assay: 6, 16, 53, 73 and 84. This considerably high genotype concordance does not appear to be casual and supports, in our opinion, the hypothesis that genital HPV types are sexually transmitted agents

  16. ApoE (Apolipoprotein E) Genotyping

    Science.gov (United States)

    ... Home Visit Global Sites Search Help? APOE Genotyping, Alzheimer Disease Share this page: Was this page helpful? Formal ... help in the diagnosis of probable late onset Alzheimer disease (AD) in symptomatic adults. It is called susceptibility ...

  17. Forensic SNP genotyping with SNaPshot

    DEFF Research Database (Denmark)

    Fondevila, M; Børsting, C; Phillips, C

    2017-01-01

    This review explores the key factors that influence the optimization, routine use, and profile interpretation of the SNaPshot single-base extension (SBE) system applied to forensic single-nucleotide polymorphism (SNP) genotyping. Despite being a mainly complimentary DNA genotyping technique...... to routine STR profiling, use of SNaPshot is an important part of the development of SNP sets for a wide range of forensic applications with these markers, from genotyping highly degraded DNA with very short amplicons to the introduction of SNPs to ascertain the ancestry and physical characteristics...... of an unidentified contact trace donor. However, this technology, as resourceful as it is, displays several features that depart from the usual STR genotyping far enough to demand a certain degree of expertise from the forensic analyst before tackling the complex casework on which SNaPshot application provides...

  18. Can Clustering in Genotype Space Reveal "Niches"?

    Science.gov (United States)

    D'Andrea, Rafael; Ostling, Annette

    2016-01-01

    Community ecology lacks the success enjoyed by population genetics to quantify the relative roles played by deterministic and stochastic processes. It has been proposed that clustered patterns of abundance in genotype space provide evidence of selection in microbial communities, since no such clustering would arise in the absence of selection. We critique this test for its unrealistic null hypothesis. We show mathematically and with simulations that point mutations alone lead to clustering in genotype space by causing correlations between abundances of similar genotypes. We also show potential deviations from the mutation-only pattern caused by immigration from a source pool. Clustered patterns in genotype space may still be revealing of selection if analyzed quantitatively but only if neutral and selective regimes can be distinguished once mutation and immigration are included in the null model.

  19. Early seedling development of Medicago truncatula genotypes ...

    African Journals Online (AJOL)

    adel

    2014-01-08

    Jan 8, 2014 ... germinated on filter papers imbibed in distilled water or in sodium .... Wards minimum variance method as a clustering algorithm. ... Mean values of plumule: radicle ratio of M. truncatula genotypes under different salt stress ...

  20. HMSRP Hawaiian Monk Seal Microsatellite Genotypes

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Currently ~2,400 Hawaiian monk seal specimens have been analyzed genetically, providing genotypes at 18 microsatellite loci. These data are organized by individual,...

  1. High diversity of hepatitis B virus genotypes in Panamanian blood donors: a molecular analysis of new variants.

    Directory of Open Access Journals (Sweden)

    Alexander A Martínez

    Full Text Available Hepatitis B Virus (HBV is an infectious agent that causes more than half of the cases of liver disease and cancer in the world. Globally there are around 250 million people chronically infected with this virus. Despite 16% of the cases of liver disease in Central America are caused by HBV, the information regarding its genetic diversity, genotypes and circulation is scarce. The purpose of this study was to evaluate the genetic variability of the HBV genotypes from HBV-DNA positive samples obtained from screening blood donors at the Social Security System of Panama and to estimate its possible origin. From 59,696 blood donors tested for HBV infection during 2010-2012, there were 74 HBV-DNA positive subjects. Analysis of the partial PreS2-S region of 27 sequences shows that 21% of the infections were caused by genotype A, 3% by genotype D and 76% by genotype F. In addition, we were able to confirm circulation of six sub-genotypes A1, A2, A3, D4, F3, F1 and a proposed new sub-genotype denominated F5pan. We found a confinement of sub-genotypes F1 and F5pan to the western area of Panama. The tMRCA analysis suggests a simultaneous circulation of previously described sub-genotypes rather than recent introductions of the Panamanian sub-genotypes in the country. Moreover, these results highlight the need of more intensive research of the HBV strains circulating in the region at the molecular level. In conclusion, Panama has a high HBV genotype diversity that includes a new proposed sub-genotype, an elevated number of PreCore-Core mutations, and confinement of these variants in a specific geographical location.

  2. A family-based likelihood ratio test for general pedigree structures that allows for genotyping error and missing data.

    Science.gov (United States)

    Yang, Yang; Wise, Carol A; Gordon, Derek; Finch, Stephen J

    2008-01-01

    The purpose of this work is the development of a family-based association test that allows for random genotyping errors and missing data and makes use of information on affected and unaffected pedigree members. We derive the conditional likelihood functions of the general nuclear family for the following scenarios: complete parental genotype data and no genotyping errors; only one genotyped parent and no genotyping errors; no parental genotype data and no genotyping errors; and no parental genotype data with genotyping errors. We find maximum likelihood estimates of the marker locus parameters, including the penetrances and population genotype frequencies under the null hypothesis that all penetrance values are equal and under the alternative hypothesis. We then compute the likelihood ratio test. We perform simulations to assess the adequacy of the central chi-square distribution approximation when the null hypothesis is true. We also perform simulations to compare the power of the TDT and this likelihood-based method. Finally, we apply our method to 23 SNPs genotyped in nuclear families from a recently published study of idiopathic scoliosis (IS). Our simulations suggest that this likelihood ratio test statistic follows a central chi-square distribution with 1 degree of freedom under the null hypothesis, even in the presence of missing data and genotyping errors. The power comparison shows that this likelihood ratio test is more powerful than the original TDT for the simulations considered. For the IS data, the marker rs7843033 shows the most significant evidence for our method (p = 0.0003), which is consistent with a previous report, which found rs7843033 to be the 2nd most significant TDTae p value among a set of 23 SNPs.

  3. Genotype Reconstruction of Paternity in European Lobsters (Homarus gammarus.

    Directory of Open Access Journals (Sweden)

    Charlie D Ellis

    Full Text Available Decapod crustaceans exhibit considerable variation in fertilisation strategies, ranging from pervasive single paternity to the near-ubiquitous presence of multiple paternity, and such knowledge of mating systems and behaviour are required for the informed management of commercially-exploited marine fisheries. We used genetic markers to assess the paternity of individual broods in the European lobster, Homarus gammarus, a species for which paternity structure is unknown. Using 13 multiplexed microsatellite loci, three of which are newly described in this study, we genotyped 10 eggs from each of 34 females collected from an Atlantic peninsula in the south-western United Kingdom. Single reconstructed paternal genotypes explained all observed progeny genotypes in each of the 34 egg clutches, and each clutch was fertilised by a different male. Simulations indicated that the probability of detecting multiple paternity was in excess of 95% if secondary sires account for at least a quarter of the brood, and in excess of 99% where additional sire success was approximately equal. Our results show that multiple paternal fertilisations are either absent, unusual, or highly skewed in favour of a single male among H. gammarus in this area. Potential mechanisms upholding single paternal fertilisation are discussed, along with the prospective utility of parentage assignments in evaluations of hatchery stocking and other fishery conservation approaches in light of this finding.

  4. A European database of Fusarium graminearum and F. culmorum trichothecene genotypes

    Directory of Open Access Journals (Sweden)

    Matias ePasquali

    2016-04-01

    Full Text Available Fusarium species, particularly Fusarium graminearum and F. culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc. that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims 1 to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013, and 2 to enhance the standardization of epidemiological data collection.Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F. graminearum, 479 F. culmorum and 3 F. cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu, which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe.The analysis of the currently available European dataset showed that in F. graminearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON (82.9%, followed by 3-acetyldeoxynivalenol (3-ADON (13.6% and nivalenol (NIV (3.5%. In F. culmorum, the prevalent genotype was 3-ADON (59.9%, while the NIV genotype accounted for the remaining 40.1%. Both geographical and temporal patterns of trichothecene genotypes distribution were identified.

  5. ESIP Information Quality Cluster (IQC)

    Science.gov (United States)

    Ramapriyan, H. K.; Peng, Ge; Moroni, David F.

    2016-01-01

    The Information Quality Cluster (IQC) within the Federation of Earth Science Information Partners (ESIP) was initially formed in 2011 and has evolved significantly over time. The current objectives of the IQC are to: 1. Actively evaluate community data quality best practices and standards; 2. Improve capture, description, discovery, and usability of information about data quality in Earth science data products; 3. Ensure producers of data products are aware of standards and best practices for conveying data quality, and data providers distributors intermediaries establish, improve and evolve mechanisms to assist users in discovering and understanding data quality information; and 4. Consistently provide guidance to data managers and stewards on how best to implement data quality standards and best practices to ensure and improve maturity of their data products. The activities of the IQC include: 1. Identification of additional needs for consistently capturing, describing, and conveying quality information through use case studies with broad and diverse applications; 2. Establishing and providing community-wide guidance on roles and responsibilities of key players and stakeholders including users and management; 3. Prototyping of conveying quality information to users in a more consistent, transparent, and digestible manner; 4. Establishing a baseline of standards and best practices for data quality; 5. Evaluating recommendations from NASA's DQWG in a broader context and proposing possible implementations; and 6. Engaging data providers, data managers, and data user communities as resources to improve our standards and best practices. Following the principles of openness of the ESIP Federation, IQC invites all individuals interested in improving capture, description, discovery, and usability of information about data quality in Earth science data products to participate in its activities.

  6. Advanced nutrient root feeding system for conveyer-type cylindrical plant growth facilities developed for microgravity

    Science.gov (United States)

    Berkovich, Yuliy A.; Smolyanina, Svetlana O.; Krivobok, Anna; Krivobok, Nikolay

    A new brand of cylindrical conveyer-type space plant growth facilities (PGF) has been created to improve of cosmonauts’ diet in the microgravity conditions. Up to date several ground prototypes of the space PGF have been made and tested: “Phytocycle”, “Vitacycle”, “Phytocycle-LED”, “Phytoconveyer”; now the space PGF “Vitacycle-T” for the Russian segment of the ISS is under developing. In the PGFs the ion-exchange salt-saturated fibrous artificial soil (AS) is used as a root medium. We have proposed the system for enrichment of irrigation water by nutrients to decrease of the AS store required for PGF working during the long space mission. The system includes root modules filled in fibrous ion-exchange AS, the enrichment column with crumble salt-saturation ion-exchange resin and the cassette with slow releasing fertilizer (SRF). Both substrates (ion-exchange resin and SRF) are necessary because of the SRF contains mostly N, P and K but another three essential elements S, Ca, Mg are provided by the ion-exchange resin. In the system water goes throw the enrichment column with ion-exchange resin fertilizing by the nutrients and comes into the mixer cell fertilize equipped with the electrical conductivity sensor. When the signal of the conductivity sensor is coming to the controller it turns on the pump directed the water flow throw the cassette with SRF until the electric conductivity of the solution in the mixer cell will reach the setpoint. The nutrient root feeding system was tested during 88 days when Chinese cabbage grew in PGF “Phytocycle-LED”. The crop has been continuously illuminated by red and blue LEDs in the PPF ratio 7 to 1; an integral PPF level has been (240 ± 10) µmol/(m2×s). There was no renewal of the used fibrous AS during the experiment. The PGF total electric power consumption was of 0,45 kW. The average fresh biomass productivity of the PGF during steady state working mode was equal 135×g/day per m2 of the illuminated

  7. Genotypic Variation for Salinity Tolerance in Sorghum (Sorghum bicolor (L. Moench Genotypes at Early Growth Stages

    Directory of Open Access Journals (Sweden)

    Tigabu, Endalew

    2013-04-01

    Full Text Available Sorghum (Sorghum bicolor L. Moench is the fifth most economically important crop among cereals in the world. Salinity is an abiotic factor which reduces productivity of sorghum. Exploiting genetic variability to identify salt tolerant genotype is one of the strategies used to overcome salinity. Pot experiment was carried out to evaluate the genetic variation of eleven sorghum genotypes for NaCl salinity response at germination and early seedling stages. The experimental treatments were five NaCl salinity levels (0, 2, 4, 8, and 16 dS m-1 and eleven sorghum genotypes (Gambella1107, Melkam, S-35, ESH-2, Gobye, 97MW6130, Meko, 76T1#23, ICSV-111, Abshir and Teshale. The experimental design was completely randomized design with three replicates.Data was analyzed using SAS (version 9.0 statistical software and means were separated by LSD. Germination rate, final germination percentage, seedling shoot length and seedling root length were measured. The ANOVA for treatments, genotypes and their interaction was found to be highly significant (p<0.001 with regard to all parameters. Genotypes Meko, Gambella1107, ICSV-111 and Melkam were found salt tolerant during germination and seedling growth stages. However, genotypes ESH-2 and Gobye were salt sensitive during both stages. The rest sorghum genotypes were intermediate in their salt tolerance. The study affirmed the presence of wide genotypic variation among the sorghum genotypes for NaCl salt tolerance.

  8. Genotypic distribution of hepatitis C virus in Thailand and Southeast Asia.

    Directory of Open Access Journals (Sweden)

    Rujipat Wasitthankasem

    Full Text Available The majority of hepatitis C virus (HCV infection results in chronic infection, which can lead to liver cirrhosis and hepatocellular carcinoma. Global burden of hepatitis C virus (HCV is estimated at 150 million individuals, or 3% of the world's population. The distribution of the seven major genotypes of HCV varies with geographical regions. Since Asia has a high incidence of HCV, we assessed the distribution of HCV genotypes in Thailand and Southeast Asia. From 588 HCV-positive samples obtained throughout Thailand, we characterized the HCV 5' untranslated region, Core, and NS5B regions by nested PCR. Nucleotide sequences obtained from both the Core and NS5B of these isolates were subjected to phylogenetic analysis, and genotypes were assigned using published reference genotypes. Results were compared to the epidemiological data of HCV genotypes identified within Southeast Asian. Among the HCV subtypes characterized in the Thai samples, subtype 3a was the most predominant (36.4%, followed by 1a (19.9%, 1b (12.6%, 3b (9.7% and 2a (0.5%. While genotype 1 was prevalent throughout Thailand (27-36%, genotype 3 was more common in the south. Genotype 6 (20.9% constituted subtype 6f (7.8%, 6n (7.7%, 6i (3.4%, 6j and 6m (0.7% each, 6c (0.3%, 6v and 6xa (0.2% each and its prevalence was significantly lower in southern Thailand compared to the north and northeast (p = 0.027 and p = 0.030, respectively. Within Southeast Asia, high prevalence of genotype 6 occurred in northern countries such as Myanmar, Laos, and Vietnam, while genotype 3 was prevalent in Thailand and Malaysia. Island nations of Singapore, Indonesia and Philippines demonstrated prevalence of genotype 1. This study further provides regional HCV genotype information that may be useful in fostering sound public health policy and tracking future patterns of HCV spread.

  9. Blood Group ABO Genotyping in Paternity Testing.

    Science.gov (United States)

    Bugert, Peter; Rink, Gabriele; Kemp, Katharina; Klüter, Harald

    2012-06-01

    BACKGROUND: The ABO blood groups result from DNA sequence variations, predominantly single nucleotide and insertion/deletion polymorphisms (SNPs and indels), in the ABO gene encoding a glycosyltransferase. The ABO blood groups A(1), A(2), B and O predominantly result from the wild type allele A1 and the major gene variants that are characterized by four diallelic markers (261G>del, 802G>A, 803G>C, 1061C>del). Here, we were interested to evaluate the impact of ABO genotyping compared to ABO phenotyping in paternity testing. METHODS: The major ABO alleles were determined by PCR amplification with sequence-specific primers (PCR-SSP) in a representative sample of 1,335 blood donors. The genotypes were compared to the ABO blood groups registered in the blood donor files. Then, the ABO phenotypes and genotypes were determined in 95 paternity trio cases that have been investigated by 12 short tandem repeat (STR) markers before. We compared statistical parameters (PL, paternity likelihood; PE, power of exclusion) of both blood grouping approaches. RESULTS: The prevalence of the major ABO alleles and genotypes corresponded to the expected occurrence of ABO blood groups in a Caucasian population. The low resolution genotyping of 4 diallelic markers revealed a correct genotype-phenotype correlation in 1,331 of 1,335 samples (99.7%). In 60 paternity trios with confirmed paternity of the alleged father based on STR analysis both PL and PE of the ABO genotype was significantly higher than of the ABO phenotype. In 12 of 35 exclusion cases (34.3%) the ABO genotype also excluded the alleged father, whereas the ABO phenotype excluded the alleged father only in 7 cases (20%). CONCLUSION: In paternity testing ABO genotyping is superior to ABO phenotyping with regard to PL and PE, however, ABO genotyping is not sufficient for valid paternity testing. Due to the much lower mutation rate compared to STR markers, blood group SNPs in addition to anonymous SNPs could be considered for

  10. Blood Group ABO Genotyping in Paternity Testing

    Science.gov (United States)

    Bugert, Peter; Rink, Gabriele; Kemp, Katharina; Klüter, Harald

    2012-01-01

    Background The ABO blood groups result from DNA sequence variations, predominantly single nucleotide and insertion/deletion polymorphisms (SNPs and indels), in the ABO gene encoding a glycosyltransferase. The ABO blood groups A1, A2, B and O predominantly result from the wild type allele A1 and the major gene variants that are characterized by four diallelic markers (261G>del, 802G>A, 803G>C, 1061C>del). Here, we were interested to evaluate the impact of ABO genotyping compared to ABO phenotyping in paternity testing. Methods The major ABO alleles were determined by PCR amplification with sequence-specific primers (PCR-SSP) in a representative sample of 1,335 blood donors. The genotypes were compared to the ABO blood groups registered in the blood donor files. Then, the ABO phenotypes and genotypes were determined in 95 paternity trio cases that have been investigated by 12 short tandem repeat (STR) markers before. We compared statistical parameters (PL, paternity likelihood; PE, power of exclusion) of both blood grouping approaches. Results The prevalence of the major ABO alleles and genotypes corresponded to the expected occurrence of ABO blood groups in a Caucasian population. The low resolution genotyping of 4 diallelic markers revealed a correct genotype-phenotype correlation in 1,331 of 1,335 samples (99.7%). In 60 paternity trios with confirmed paternity of the alleged father based on STR analysis both PL and PE of the ABO genotype was significantly higher than of the ABO phenotype. In 12 of 35 exclusion cases (34.3%) the ABO genotype also excluded the alleged father, whereas the ABO phenotype excluded the alleged father only in 7 cases (20%). Conclusion In paternity testing ABO genotyping is superior to ABO phenotyping with regard to PL and PE, however, ABO genotyping is not sufficient for valid paternity testing. Due to the much lower mutation rate compared to STR markers, blood group SNPs in addition to anonymous SNPs could be considered for future

  11. Automobile or other conveyance and adaptive equipment certificate of eligibility for veterans or members of the armed forces with amyotrophic lateral sclerosis. Interim final rule.

    Science.gov (United States)

    2015-02-25

    The Department of Veterans Affairs (VA) is amending its adjudication regulation regarding certificates of eligibility for financial assistance in the purchase of an automobile or other conveyance and adaptive equipment. The amendment authorizes automatic issuance of a certificate of eligibility for financial assistance in the purchase of an automobile or other conveyance and adaptive equipment to all veterans with service-connected amyotrophic lateral sclerosis (ALS) and members of the Armed Forces serving on active duty with ALS.

  12. Conveying Cutting-Edge Discoveries to Nonscientists: Effective Communication with Media

    Science.gov (United States)

    Gupta, Nikhil; Hamilton, Kathleen; Chamot, Joshua

    2013-07-01

    The benefits of using information and news media for disseminating cutting-edge scientific discoveries to the public are well known. Taxpayers and lawmakers need to be informed about the implications of public investments, young students' interest can be molded toward science- and technology-based careers, and public awareness of important issues can be raised by effectively using media. However, communication with news media is different from the means commonly used by scientists—journal publications and conference presentations. This article is intended to provide information on three basic aspects of media interactions—why, what, and how to communicate. The increasing importance of this mode of dissemination in this information age cannot be ignored; rather, it can be effectively utilized for educating a wider population base.

  13. A compliance monitoring program for use and operation of the Grasslands Bypass for drainage conveyance in the western San Joaquin Valley

    Energy Technology Data Exchange (ETDEWEB)

    Quinn, N.W.T.

    1995-11-01

    The Bureau of Reclamation (Reclamation) signed a Finding of No Significant Impact (FONSI) No. 92-02-MP dated October 18, 1991 and a Supplement to the FONSI No. 92-03-MP dated April 15, 1991, for use of a 19 mile segment of the San Luis Drain, renamed the Grasslands Bypass, to convey agricultural drainage waters to the San Joaquin River. An Environmental Assessment was prepared and published in support of the FONSI. On September 7, 1995 a Supplemental Environmental Assessment was prepared to update the original document to account for changes to the original project. These changes included a change to the point of entry to the Drain and an increase in the length of the Drain utilized by the Project from 19 to 28 miles. Environmental commitments and a schedule of fees for non-compliance with monthly and annual selenium load targets were also agreed upon for the current Project. Environmental documents preceding the FONSI outlined a monitoring program that obtained general and informal concurrence by technical staff of the participating agencies. A revised version of the proposed monitoring program was distributed by Reclamation for review and comment by the agencies in July 1992. A final monitoring plan document was issued in June 1993 and was subsequently approved by the Oversight Committee. This document includes substantial revisions to the existing June 1993 monitoring plan to reflect the compliance requirements of the current Project.

  14. Size-dependent characteristics of electrostatically actuated fluid-conveying carbon nanotubes based on modified couple stress theory.

    Science.gov (United States)

    Fakhrabadi, Mir Masoud Seyyed; Rastgoo, Abbas; Ahmadian, Mohammad Taghi

    2013-01-01

    The paper presents the effects of fluid flow on the static and dynamic properties of carbon nanotubes that convey a viscous fluid. The mathematical model is based on the modified couple stress theory. The effects of various fluid parameters and boundary conditions on the pull-in voltages are investigated in detail. The applicability of the proposed system as nanovalves or nanosensors in nanoscale fluidic systems is elaborated. The results confirm that the nanoscale system studied in this paper can be properly applied for these purposes.

  15. Cotton genotypes selection through artificial neural networks.

    Science.gov (United States)

    Júnior, E G Silva; Cardoso, D B O; Reis, M C; Nascimento, A F O; Bortolin, D I; Martins, M R; Sousa, L B

    2017-09-27

    Breeding programs currently use statistical analysis to assist in the identification of superior genotypes at various stages of a cultivar's development. Differently from these analyses, the computational intelligence approach has been little explored in genetic improvement of cotton. Thus, this study was carried out with the objective of presenting the use of artificial neural networks as auxiliary tools in the improvement of the cotton to improve fiber quality. To demonstrate the applicability of this approach, this research was carried out using the evaluation data of 40 genotypes. In order to classify the genotypes for fiber quality, the artificial neural networks were trained with replicate data of 20 genotypes of cotton evaluated in the harvests of 2013/14 and 2014/15, regarding fiber length, uniformity of length, fiber strength, micronaire index, elongation, short fiber index, maturity index, reflectance degree, and fiber quality index. This quality index was estimated by means of a weighted average on the determined score (1 to 5) of each characteristic of the HVI evaluated, according to its industry standards. The artificial neural networks presented a high capacity of correct classification of the 20 selected genotypes based on the fiber quality index, so that when using fiber length associated with the short fiber index, fiber maturation, and micronaire index, the artificial neural networks presented better results than using only fiber length and previous associations. It was also observed that to submit data of means of new genotypes to the neural networks trained with data of repetition, provides better results of classification of the genotypes. When observing the results obtained in the present study, it was verified that the artificial neural networks present great potential to be used in the different stages of a genetic improvement program of the cotton, aiming at the improvement of the fiber quality of the future cultivars.

  16. The use of a tactile interface to convey position and motion perceptions

    Science.gov (United States)

    Rupert, A. H.; Guedry, F. E.; Reschke, M. F.

    1994-01-01

    Under normal terrestrial conditions, perception of position and motion is determined by central nervous system integration of concordant and redundant information from multiple sensory channels (somatosensory, vestibular, visual), which collectively yield vertical perceptions. In the acceleration environment experienced by the pilots, the somatosensory and vestibular sensors frequently present false information concerning the direction of gravity. When presented with conflicting sensory information, it is normal for pilots to experience episodes of disorientation. We have developed a tactile interface that obtains vertical roll and pitch information from a gyro-stabilized attitude indicator and maps this information in a one-to-one correspondence onto the torso of the body using a matrix of vibrotactors. This enables the pilot to continuously maintain an awareness of aircraft attitude without reference to visual cues, utilizing a sensory channel that normally operates at the subconscious level. Although initially developed to improve pilot spatial awareness, this device has obvious applications to 1) simulation and training, 2) nonvisual tracking of targets, which can reduce the need for pilots to make head movements in the high-G environment of aerial combat, and 3) orientation in environments with minimal somatosensory cues (e.g., underwater) or gravitational cues (e.g., space).

  17. Comprehension by older people of medication information with or without supplementary pharmaceutical pictograms.

    Science.gov (United States)

    Ng, Annie W Y; Chan, Alan H S; Ho, Vincy W S

    2017-01-01

    This study examined the benefits of pharmaceutical pictograms for improving comprehension of medication information for older people. Fifty Hong Kong Chinese older people completed a medical information comprehension task for five drugs. Participants in the control group were presented with text labels while those in the experimental group were given the text labels plus supplementary pharmaceutical pictograms, and then all reported their understanding of the medication information conveyed. Lower educated older people had poorer understanding of medication information. The addition of pharmaceutical pictograms significantly improved the comprehension of medication information for older people. The majority of older people tested with pictograms favored adding pictograms to text and thought the pictograms were useful for conveying medical information rather than using written text alone. The findings suggested that pharmaceutical and health care professionals should include pharmaceutical pictograms on labels to better convey instructions on medication to older people.

  18. Genotypes and viral variants in chronic hepatitis B: Areview of epidemiology and clinical relevance

    Institute of Scientific and Technical Information of China (English)

    Catherine MN Croagh; Paul V Desmond; Sally J Bell

    2015-01-01

    The Hepatitis B Virus (HBV) has a worldwide distribu-tionand is endemic in many populations. It is constantlyevolving and 10 genotypic strains have been identifiedwith varying prevalences in different geographic regions.Numerous stable mutations in the core gene and inthe surface gene of the HBV have also been identifiedin untreated HBV populations. The genotypes andviral variants have been associated with certain clinicalfeatures of HBV related liver disease and Hepatocellularcarcinoma. For example Genotype C is associated withlater hepatitis B e antigen (HBeAg) seroconversion, andmore advanced liver disease. Genotype A is associatedwith a greater risk of progression to chronicityin adultacquired HBV infections. Genotype D is particularlyassociated with the precore mutation and HBeAgnegative chronic hepatitis B (CHB). The genotypesprevalent in parts of West Africa, Central and SouthAmerica, E, F and H respectively, are less well studied.Viral variants especially the Basal Core Promotor mutationis associated with increased risk of fibrosis and cancerof the liver. Although not currently part of routine clinicalcare, evaluation of genotype and viral variants mayprovide useful adjunctive information in predicting riskabout liver related morbidity in patients with CHB.

  19. Distribution and epidemiologic trends of HBV genotypes and subtypes in 14 countries neighboring china.

    Science.gov (United States)

    Qian, Zhao; Jianqiong, Wang; Hongmei, Li; Rong, Zeng; Li, Li; Jinping, Zhang; Tao, Shen

    2015-05-01

    The number of cases of HBV infection reported by the WHO for each district and country is positively correlated with the number of HBV sequences in the database isolated from the corresponding district and country. This study determined distribution characteristics of HBV genotypes and subtypes in 14 countries neighboring China. The progress made in genomic research involving HBV was also reviewed. Nine hundred fifty-one complete genome sequences of HBV from 14 countries neighboring China were selected from NCBI. The sequence-related information was analyzed and recorded. One hundred seventy-two sequences of HBV genotype B were screened for alignment using DNA star and MEGA 5.1. Dominant HBV genotypes in the countries neighboring China were genotypes B, C and D and dominant subtypes were adw2 and adrq+. The association between genotype and serotype of HBV in these countries was shown to differ from previous research results. As shown by sequence alignment, the sequence divergence between five subgenotypes (B3, B5, B7, B8 and B9) was below 4%. The B subgenotypes shared six common specific amino acid sites in the S region. The B3, B5, B7, B8 and B9 subgenotypes can be clustered into quasi-sub-genotype B3 and the open reading frame of HBV has a start codon preference; however, whether a mutation in the start codon in the pre-S2 region has an impact on survival and replication of HBV remains to be determined.

  20. Association of RBP4 Genotype with Phenotypic Reproductive Traits of Sows

    Science.gov (United States)

    Marantidis, A.; Laliotis, G. P.; Avdi, M.

    2016-01-01

    PCR-RFLP was applied to a commercial crossbred pig population in order to investigate the association between polymorphism (SNP) of Retinol-binding protein 4 (RBP4) gene and reproductive performance. 400 sows were genotyped and 2000 records of reproductive traits were used in order to retrieve information about the allele frequencies and the association of the RBP4 gene with main reproductive characteristics of the population. A deviation from the Hardy-Weinberg equilibrium was observed as a result of the AB genotype excess. In addition, the AA genotype saw statistically significant higher values of (i) the total number of born piglets (p < 0.05), (ii) the number of piglets born alive (p < 0.01), and (iii) the number of weaned piglets (p < 0.01). The number of the mummified piglets and the number of the piglets born dead did not differ between the various RBP4 genotypes. Interestingly, the AA genotype had a negative impact (p < 0.05) on the number of piglets born dead, resulting indirectly in a larger litter size. In conclusion, the AA genotype and in extension the A allele of RBP4 gene are in favor of producing larger litter size, suggesting that the RBP4 gene may be used in Marker-Assisted Selection (MAS) programs for a rapid improvement of the reproductive characteristics in pigs. PMID:26885398

  1. Association of RBP4 Genotype with Phenotypic Reproductive Traits of Sows

    Directory of Open Access Journals (Sweden)

    A. Marantidis

    2016-01-01

    Full Text Available PCR-RFLP was applied to a commercial crossbred pig population in order to investigate the association between polymorphism (SNP of Retinol-binding protein 4 (RBP4 gene and reproductive performance. 400 sows were genotyped and 2000 records of reproductive traits were used in order to retrieve information about the allele frequencies and the association of the RBP4 gene with main reproductive characteristics of the population. A deviation from the Hardy-Weinberg equilibrium was observed as a result of the AB genotype excess. In addition, the AA genotype saw statistically significant higher values of (i the total number of born piglets (p<0.05, (ii the number of piglets born alive (p<0.01, and (iii the number of weaned piglets (p<0.01. The number of the mummified piglets and the number of the piglets born dead did not differ between the various RBP4 genotypes. Interestingly, the AA genotype had a negative impact (p<0.05 on the number of piglets born dead, resulting indirectly in a larger litter size. In conclusion, the AA genotype and in extension the A allele of RBP4 gene are in favor of producing larger litter size, suggesting that the RBP4 gene may be used in Marker-Assisted Selection (MAS programs for a rapid improvement of the reproductive characteristics in pigs.

  2. Phenotypic and genotypic variation in Iranian Pistachios

    Directory of Open Access Journals (Sweden)

    Somayeh Tayefeh Aliakbarkhani

    2015-12-01

    Full Text Available As Iran is one of the richest pistachio germplasms a few studies have been conducted on different sexes of pistachio trees, in areas where this crop emerged. To this end, 40 male and female Iranian pistachio genotypes from Feizabad region, Khorasan, Iran; were evaluated using morphological characters and randomly amplified polymorphic DNA (RAPD markers. For morphological assessments, 54 variables were considered to investigate similarities between and among the studied genotypes. Morphological data indicated relative superiority in some female genotypes (such as Sefid 1, Sefid Sabuni 2, Garmesiah, and Ghermezdorosht Z regarding characters such as halfcrackedness, the percentages of protein and fat content. 115 polymorphic bands were recorded with 92.83% average polymorphism among all primers. The total resolving power (Rp of the primers was 74.54. The range of genetic similarity varied from about 0.31 to about 0.70. Genotypes were segregated into eight groups at the similarity limit of 0.41. Results of present investigation could be helpful for strategic decisions for maintaining Iranian pistachio genotypes.

  3. Health literacy, information seeking, and trust in information in Haitians.

    Science.gov (United States)

    Lubetkin, Erica I; Zabor, Emily C; Isaac, Kathleen; Brennessel, Debra; Kemeny, M Margaret; Hay, Jennifer L

    2015-05-01

    To assess heath literacy, health information seeking, and trust in health-related information among Haitian immigrants seen in primary care. Health literacy was measured by the Brief Health Literacy Screen (BHLS); items on health information use were from the 2007 Health Information National Trends Survey. BHLS scores differed according to age, education, and survey language. Participants with lower levels of health literacy tended to be more likely to place "a lot" or "some" trust in family and friends and religious organizations and leaders as sources of information about health or medical topics. Constructing a culturally-tailored and appropriate intervention regarding health promotion requires understanding how the population accesses and conveys health information.

  4. Application of pooled genotyping to scan candidate regions for association with HDL cholesterol levels

    Directory of Open Access Journals (Sweden)

    Hinds David A

    2004-11-01

    Full Text Available Abstract Association studies are used to identify genetic determinants of complex human traits of medical interest. With the large number of validated single nucleotide polymorphisms (SNPs currently available, two limiting factors in association studies are genotyping capability and costs. Pooled DNA genotyping has been proposed as an efficient means of screening SNPs for allele frequency differences in case-control studies and for prioritising them for subsequent individual genotyping analysis. Here, we apply quantitative pooled genotyping followed by individual genotyping and replication to identify associations with human serum high-density lipoprotein (HDL cholesterol levels. The DNA from individuals with low and high HDL cholesterol levels was pooled separately, each pool was amplified by polymerase chain reaction in triplicate and each amplified product was separately hybridised to a high-density oligonucleotide array. Allele frequency differences between case and control groups with low and high HDL cholesterol levels were estimated for 7,283 SNPs distributed across 71 candidate gene regions spanning a total of 17.1 megabases. A novel method was developed to take advantage of independently derived haplotype map information to improve the pooled estimates of allele frequency differences. A subset of SNPs with the largest estimated allele frequency differences between low and high HDL cholesterol groups was chosen for individual genotyping in the study population, as well as in a separate replication population. Four SNPs in a single haplotype block within the cholesteryl ester transfer protein (CETP gene interval were significantly associated with HDL cholesterol levels in both populations. Our study is among the first to demonstrate the application of pooled genotyping followed by confirmation with individual genotyping to identify genetic determinants of a complex trait.

  5. Automated SNP Genotype Clustering Algorithm to Improve Data Completeness in High-Throughput SNP Genotyping Datasets from Custom Arrays

    Institute of Scientific and Technical Information of China (English)

    Edward; M.; Smith; Jack; Littrell; Michael; Olivier

    2007-01-01

    High-throughput SNP genotyping platforms use automated genotype calling algo- rithms to assign genotypes. While these algorithms work efficiently for individual platforms, they are not compatible with other platforms, and have individual biases that result in missed genotype calls. Here we present data on the use of a second complementary SNP genotype clustering algorithm. The algorithm was originally designed for individual fluorescent SNP genotyping assays, and has been opti- mized to permit the clustering of large datasets generated from custom-designed Affymetrix SNP panels. In an analysis of data from a 3K array genotyped on 1,560 samples, the additional analysis increased the overall number of genotypes by over 45,000, significantly improving the completeness of the experimental data. This analysis suggests that the use of multiple genotype calling algorithms may be ad- visable in high-throughput SNP genotyping experiments. The software is written in Perl and is available from the corresponding author.

  6. Molecular motors: how to make models that can be used to convey the concept of molecular ratchets and thermal capture.

    Science.gov (United States)

    DoHarris, Lindsay; Giesler, Amanda; Humber, Brent; Sukumar, Aravin; Janssen, Luke J

    2011-06-01

    A wide variety of cellular processes use molecular motors, including processive motors that move along some form of track (e.g., myosin with actin, kinesin or dynein with tubulin) and polymerases that move along a template (e.g., DNA and RNA polymerases, ribosomes). In trying to understand how these molecular motors actually move, many apply their understanding of how man-made motors work: the latter use some form of energy to exert a force or torque on its load. However, quite a different mechanism has been proposed to possibly account for the movement of molecular motors. Rather than hydrolyzing ATP to push or pull their load, they might use their own thermal vibrational energy as well as that of their load and their environment to move the load, capturing those movements that occur along a desired vector or axis and resisting others; ATP hydrolysis is required to make backward movements impossible. This intriguing thermal capture or Brownian ratchet model is relatively more difficult to convey to students. In this report, we describe several teaching aids that are very easily constructed using widely available household materials to convey the concept of a molecular ratchet.

  7. Vibrations of fluid-conveying inclined single-walled carbon nanotubes acted upon by a longitudinal magnetic field

    Science.gov (United States)

    Kiani, Keivan

    2016-12-01

    This work deals with the influence of the longitudinal magnetic field on vibrations of inclined single-walled carbon nanotubes (SWCNTs) subjected to an inside fluid flow. Using an equivalent continuum structure model for the SWCNT and a plug-like model for the moving inside fluid flow, the nonlocal longitudinal and transverse equations of motion of magnetically affected SWCNTs are obtained in the context of small deformations. By application of the assumed-mode methodology, the displacements are discretized in terms of vibration mode shapes, and by exploiting generalized Newmark-β scheme, their corresponding time-dependent parameters are determined at each time. In the presence of the longitudinal magnetic field, the effects of the small-scale parameter, fluid flow velocity, and inclination angle on both longitudinal and transverse vibrations of SWCNTs are addressed. The obtained results reveal that the longitudinal magnetic field has fairly no effect on the longitudinal dynamic behavior of the nanostructure. However, maximum values of both transverse displacement and nonlocal bending moment of the fluid-conveying SWCNT would reduce as the strength of the magnetic field grows. Such a fact becomes more highlighted for high levels of the fluid flow velocity. The obtained results indicate that the longitudinal magnetic field can be exploited as an efficient way to control transverse vibrations of SWCNTs conveying fluids.

  8. Parallel Dynamic Analysis of a Large-Scale Water Conveyance Tunnel under Seismic Excitation Using ALE Finite-Element Method

    Directory of Open Access Journals (Sweden)

    Xiaoqing Wang

    2016-01-01

    Full Text Available Parallel analyses about the dynamic responses of a large-scale water conveyance tunnel under seismic excitation are presented in this paper. A full three-dimensional numerical model considering the water-tunnel-soil coupling is established and adopted to investigate the tunnel’s dynamic responses. The movement and sloshing of the internal water are simulated using the multi-material Arbitrary Lagrangian Eulerian (ALE method. Nonlinear fluid–structure interaction (FSI between tunnel and inner water is treated by using the penalty method. Nonlinear soil-structure interaction (SSI between soil and tunnel is dealt with by using the surface to surface contact algorithm. To overcome computing power limitations and to deal with such a large-scale calculation, a parallel algorithm based on the modified recursive coordinate bisection (MRCB considering the balance of SSI and FSI loads is proposed and used. The whole simulation is accomplished on Dawning 5000 A using the proposed MRCB based parallel algorithm optimized to run on supercomputers. The simulation model and the proposed approaches are validated by comparison with the added mass method. Dynamic responses of the tunnel are analyzed and the parallelism is discussed. Besides, factors affecting the dynamic responses are investigated. Better speedup and parallel efficiency show the scalability of the parallel method and the analysis results can be used to aid in the design of water conveyance tunnels.

  9. Identification of Some Walnut Genotypes in Lorestan Province of Iran and Selection of 54 Superior Genotypes

    Directory of Open Access Journals (Sweden)

    A. Mohammadi

    2015-06-01

    Full Text Available Identification and selection of superior genotypes is the first step in walnut breeding programs. For identifying superior genotypes in Lorestan province, Iran, 35000 seedling genotypes were evaluated during 2008-2009. 29 Phenological traits were evaluated using IPGIRI descriptors in 288 selected seedling genotypes. Finally 54 promising genotypes with 10 major phenological traits were evaluated and classified to five groups. Based on the results, The first group included B17 alone as a late leafing genotype. The second group included A11, J14, K20, H19, M13, J1, B14, E14, E6, G17, M7, O9, B7, L6, L10, F12, D6, J15, J16, N5 and N15 genotypes with high kernel percentage, very bright kernel colors, less shell thickness and medium basal fruit pore. M9 with the highest kernel percent among all of the genotypes and 80% of lateral bearing, closed basal fruit pore, less shell thickness and high fruit and kernel weight was classified in another groupe. A7, C5, N3, N18, A17, D1, N14, D4, I4, J6, K17, N4, N19, C10, E13, N13 and N16 genotypes with medium to high fruit diameter, less shell thickness, medium fruit and kernel weight and kernel percentage were classified in the next group. The fifth group included 10 promising genotypes consisting A1, A2, C12, D10, D11, D13, F3, D17, A3, N7, I13, J7, K9 and N11 with quite late leafing and lateral fruit bearing of more than 90% .

  10. 75 FR 77659 - Notice of Realty Action; Recreation and Public Purposes Act Classification for Conveyance of...

    Science.gov (United States)

    2010-12-13

    ... Monticello Field Office, 365 North Main, or P.O. Box 7, Monticello, Utah 84535. FOR FURTHER INFORMATION... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF THE INTERIOR... services facilities, office space, equipment yard, weatherization services, and elections office....

  11. Do Dynamic Facial Expressions Convey Emotions to Children Better than Do Static Ones?

    Science.gov (United States)

    Widen, Sherri C.; Russell, James A.

    2015-01-01

    Past research has shown that children recognize emotions from facial expressions poorly and improve only gradually with age, but the stimuli in such studies have been static faces. Because dynamic faces include more information, it may well be that children more readily recognize emotions from dynamic facial expressions. The current study of…

  12. Teaching Tip: Utilizing Classroom Simulation to Convey Key Concepts in IT Portfolio Management

    Science.gov (United States)

    Larson, Eric C.

    2013-01-01

    Managing a portfolio of IT projects is an important capability for firms and their managers. The classroom simulation described here provides students in an MBA information systems management/strategy course with the opportunity to deepen their understanding of the key concepts that should be considered in managing an IT portfolio and helps…

  13. Creating Cultures of Teaching and Learning: Conveying Dance and Somatic Education Pedagogy

    Science.gov (United States)

    Dragon, Donna A.

    2015-01-01

    Often in teaching dance, methods of teaching and learning are silently embedded into dance classroom experiences. Unidentified and undisclosed pedagogic information has impacted the content of dance history; the perpetuation of authoritarian teaching practices within dance technique classes and in some dance classes deemed "somatics";…

  14. 75 FR 2879 - Use of Tobacco Marketing Descriptors to Convey Modified Risk; Request for Comments

    Science.gov (United States)

    2010-01-19

    ... information will be used to further FDA's efforts to reduce misleading and deceptive advertising practices..., labeling, or advertising of which uses the descriptors `light', `mild', or `low' or similar descriptors... label, labeling, or advertising of modified risk tobacco products. III. Comments Interested persons may...

  15. Creating Cultures of Teaching and Learning: Conveying Dance and Somatic Education Pedagogy

    Science.gov (United States)

    Dragon, Donna A.

    2015-01-01

    Often in teaching dance, methods of teaching and learning are silently embedded into dance classroom experiences. Unidentified and undisclosed pedagogic information has impacted the content of dance history; the perpetuation of authoritarian teaching practices within dance technique classes and in some dance classes deemed "somatics";…

  16. Teaching Tip: Utilizing Classroom Simulation to Convey Key Concepts in IT Portfolio Management

    Science.gov (United States)

    Larson, Eric C.

    2013-01-01

    Managing a portfolio of IT projects is an important capability for firms and their managers. The classroom simulation described here provides students in an MBA information systems management/strategy course with the opportunity to deepen their understanding of the key concepts that should be considered in managing an IT portfolio and helps…

  17. Do Dynamic Facial Expressions Convey Emotions to Children Better than Do Static Ones?

    Science.gov (United States)

    Widen, Sherri C.; Russell, James A.

    2015-01-01

    Past research has shown that children recognize emotions from facial expressions poorly and improve only gradually with age, but the stimuli in such studies have been static faces. Because dynamic faces include more information, it may well be that children more readily recognize emotions from dynamic facial expressions. The current study of…

  18. Using Websites to Convey Scientific Uncertainties for Volcanic Processes and Potential Hazards

    Science.gov (United States)

    Venezky, D. Y.; Lowenstern, J. B.; Hill, D. P.

    2005-12-01

    The Yellowstone Volcano Observatory (YVO) and Long Valley Observatory (LVO) websites have greatly increased the public's awareness and access to information about scientific uncertainties for volcanic processes by communicating at multiple levels of understanding and varied levels of detail. Our websites serve a broad audience ranging from visitors unaware of the calderas, to lay volcano enthusiasts, to scientists, federal agencies, and emergency managers. Both Yellowstone and Long Valley are highly visited tourist attractions with histories of caldera-forming eruptions large enough to alter global climate temporarily. Although it is much more likely that future activity would be on a small scale at either volcano, we are constantly posed questions about low-probability, high-impact events such as the caldera-forming eruption depicted in the recent BBC/Discovery movie, "Supervolcano". YVO and LVO website objectives include: providing monitoring data, explaining the likelihood of future events, summarizing research results, helping media provide reliable information, and expanding on information presented by the media. Providing detailed current information is a crucial website component as the public often searches online to augment information gained from often cryptic pronouncements by the media. In May 2005, for example, YVO saw an order of magnitude increase in page requests on the day MSNBC ran the misleading headline, "Yellowstone eruption threat high." The headline referred not to current events but a general rating of Yellowstone as one of 37 "high threat" volcanoes in the USGS National Volcano Early Warning System report. As websites become a more dominant source of information, we continuously revise our communication plans to make the most of this evolving medium. Because the internet gives equal access to all information providers, we find ourselves competing with various "doomsday" websites that sensationalize and distort the current understanding of

  19. Comparison of genotypes I and III in Japanese encephalitis virus reveals distinct differences in their genetic and host diversity.

    Science.gov (United States)

    Han, Na; Adams, James; Chen, Ping; Guo, Zhen-yang; Zhong, Xiang-fu; Fang, Wei; Li, Na; Wen, Lei; Tao, Xiao-yan; Yuan, Zhi-ming; Rayner, Simon

    2014-10-01

    Japanese encephalitis (JE) is an arthropod-borne disease associated with the majority of viral encephalitis cases in the Asia-Pacific region. The causative agent, Japanese encephalitis virus (JEV), has been phylogenetically divided into five genotypes. Recent surveillance data indicate that genotype I (GI) is gradually replacing genotype III (GIII) as the dominant genotype. To investigate the mechanism behind the genotype shift and the potential consequences in terms of vaccine efficacy, human cases, and virus dissemination, we collected (i) all full-length and partial JEV molecular sequences and (ii) associated genotype and host information comprising a data set of 873 sequences. We then examined differences between the two genotypes at the genetic and epidemiological level by investigating amino acid mutations, positive selection, and host range. We found that although GI is dominant, it has fewer sites predicted to be under positive selection, a narrower host range, and significantly fewer human isolates. For the E protein, the sites under positive selection define a haplotype set for each genotype that shows striking differences in their composition and diversity, with GIII showing significantly more variety than GI. Our results suggest that GI has displaced GIII by achieving a replication cycle that is more efficient but is also more restricted in its host range. Japanese encephalitis is an arthropod-borne disease associated with the majority of viral encephalitis cases in the Asia-Pacific region. The causative agent, Japanese encephalitis virus (JEV), has been divided into five genotypes based on sequence similarity. Recent data indicate that genotype I (GI) is gradually replacing genotype III (GIII) as the dominant genotype. Understanding the reasons behind this shift and the potential consequences in terms of vaccine efficacy, human cases, and virus dissemination is important for controlling the spread of the virus and reducing human fatalities. We

  20. Saponin profile of green asparagus genotypes.

    Science.gov (United States)

    Vázquez-Castilla, Sara; Jaramillo-Carmona, Sara; Fuentes-Alventosa, Jose María; Jiménez-Araujo, Ana; Rodríguez-Arcos, Rocío; Cermeño-Sacristán, Pedro; Espejo-Calvo, Juan Antonio; Guillén-Bejarano, Rafael

    2013-11-20

    The main goal of this study was to determine the saponin profiles of different "triguero" asparagus genotypes and to compare them to green asparagus commercial hybrids. The samples consisted of 31 commercial hybrids and 58 genotypes from the Huétor-Tájar (HT) population variety ("triguero"). The saponin analysis by high-performance liquid chromatography-mass spectrometry allowed for the determination of 12 saponins derived from a furostan-type steroidal genin, 4 of which had never been described in the edible part of asparagus. The saponin profile of "triguero" asparagus was a combination of these new saponins and protodioscin. Although protodioscin was the major saponin found in commercial hybrids, some of these 12 saponins were detected as major components in some of the commercial hybrids. The total contents of saponins described in some of these HT genotypes reach values as high as 10-100 times higher than those found in commercial hybrids.

  1. ABO Genotyping of Complete Hydatidiform Moles

    Directory of Open Access Journals (Sweden)

    R. A. Fisher

    1993-01-01

    Full Text Available It has been suggested that the ABO blood group of a patient and her partner influence the clinical outcome for patients having a pregnancy with a complete hydatidiform mole (CHM. Since CHM lack red blood Cells, it has not previously been possible to type CHM serologically and investigate the relationship between the blood group of the CHM and that of the patient. In the present study we have demonstrated the feasibility of using molecular genotyping to determine the ABO genotype of CHM, the ABO genotype being consistent with the androgenetic origin of CHM in all cases. In the series of 48 cases of CHM, the requirement for chemotherapy was not significantly different in those patients with a CHM of like blood group compared with those with a CHM of unlike blood group.

  2. Tree species, tree genotypes and tree genotypic diversity levels affect microbe-mediated soil ecosystem functions in a subtropical forest

    OpenAIRE

    Purahong, Witoon; Durka, Walter; Fischer, Markus; Dommert, Sven; Schöps, Ricardo; Buscot, François; Wubet, Tesfaye

    2016-01-01

    Tree species identity and tree genotypes contribute to the shaping of soil microbial communities. However, knowledge about how these two factors influence soil ecosystem functions is still lacking. Furthermore, in forest ecosystems tree genotypes co-occur and interact with each other, thus the effects of tree genotypic diversity on soil ecosystem functions merit attention. Here we investigated the effects of tree species, tree genotypes and genotypic diversity levels, alongside soil physicoch...

  3. PeakSeeker: a program for interpreting genotypes of mononucleotide repeats

    Directory of Open Access Journals (Sweden)

    Salipante Stephen J

    2009-02-01

    Full Text Available Abstract Background Mononucleotide repeat microsatellites are abundant, highly polymorphic DNA sequences, having the potential to serve as valuable genetic markers. Use of mononucleotide microsatellites has been limited by their tendency to produce "stutter", confounding signals from insertions and deletions within the mononucleotide tract that occur during PCR, which complicates interpretation of genotypes by masking the true position of alleles. Consequently, microsatellites with larger repeating subunits (dinucleotide and trinucleotide motifs are used, which produce less stutter but are less genetically heterogeneous and less informative. A method to interpret the genotypes of mononucleotide repeats would permit the widespread use of those highly informative microsatellites in genetic research. Findings We have developed an approach to interpret genotypes of mononucleotide repeats using a software program, named PeakSeeker. PeakSeeker interprets experimental electropherograms as the most likely product of signals from individual alleles. Because mononucleotide tracts demonstrate locus-specific patterns of stutter peaks, this approach requires that the genotype pattern from a single allele is defined for each marker, which can be approximated by genotyping single DNA molecules or homozygotes. We have evaluated the program's ability to discriminate various types of homozygous and heterozygous mononucleotide loci using simulated and experimental data. Conclusion Mononucleotide tracts offer significant advantages over di- and tri-nucleotide microsatellite markers traditionally employed in genetic research. The PeakSeeker algorithm provides a high-throughput means to type mononucleotide tracts using conventional and widely implemented fragment length polymorphism genotyping. Furthermore, the PeakSeeker algorithm could potentially be adapted to improve, and perhaps to standardize, the analysis of conventional microsatellite genotypes.

  4. Role of cytochrome P450 genotype in the steps toward personalized drug therapy

    Directory of Open Access Journals (Sweden)

    Cavallari LH

    2011-11-01

    Full Text Available Larisa H Cavallari1,2, Hyunyoung Jeong1,2, Adam Bress11Department of Pharmacy Practice, 2Department of Biopharmaceutical Sciences, College of Pharmacy, University of Illinois at Chicago, Chicago, IL, USAAbstract: Genetic polymorphism for cytochrome 450 (P450 enzymes leads to interindividual variability in the plasma concentrations of many drugs. In some cases, P450 genotype results in decreased enzyme activity and an increased risk for adverse drug effects. For example, individuals with the CYP2D6 loss-of-function genotype are at increased risk for ventricular arrhythmia if treated with usual does of thioridazine. In other cases, P450 genotype may influence the dose of a drug required to achieve a desired effect. This is the case with warfarin, with lower doses often necessary in carriers of a variant CYP2C9*2 or *3 allele to avoid supratherapeutic anticoagulation. When a prodrug, such as clopidogrel or codeine, must undergo hepatic biotransformation to its active form, a loss-of-function P450 genotype leads to reduced concentrations of the active drug and decreased drug efficacy. In contrast, patients with multiple CYP2D6 gene copies are at risk for opioid-related toxicity if treated with usual doses of codeine-containing analgesics. At least 25 drugs contain information in their US Food and Drug Administration-approved labeling regarding P450 genotype. The CYP2C9, CYP2C19, and CYP2D6 genes are the P450 genes most often cited. To date, integration of P450 genetic information into clinical decision making is limited. However, some institutions are beginning to embrace routine P450 genotyping to assist in the treatment of their patients. Genotyping for P450 variants may carry less risk for discrimination compared with genotyping for disease-associated variants. As such, P450 genotyping is likely to lead the way in the clinical implementation of pharmacogenomics. This review discusses variability in the CYP2C9, CYP2C19, and CYP2D6 genes and the

  5. ParentChecker: a computer program for automated inference of missing parental genotype calls and linkage phase correction.

    Science.gov (United States)

    Hu, Zhiqiu; Ehlers, Jeffrey D; Roberts, Philip A; Close, Timothy J; Lucas, Mitchell R; Wanamaker, Steve; Xu, Shizhong

    2012-02-23

    Accurate genetic maps are the cornerstones of genetic discovery, but their construction can be hampered by missing parental genotype information. Inference of parental haplotypes and correction of phase errors can be done manually on a one by one basis with the aide of current software tools, but this is tedious and time consuming for the high marker density datasets currently being generated for many crop species. Tools that help automate the process of inferring parental genotypes can greatly speed the process of map building. We developed a software tool that infers and outputs missing parental genotype information based on observed patterns of segregation in mapping populations. When phases are correctly inferred, they can be fed back to the mapping software to quickly improve marker order and placement on genetic maps. ParentChecker is a user-friendly tool that uses the segregation patterns of progeny to infer missing genotype information of parental lines that have been used to construct a mapping population. It can also be used to automate correction of linkage phase errors in genotypic data that are in ABH format. ParentChecker efficiently improves genetic mapping datasets for cases where parental information is incomplete by automating the process of inferring missing genotypes of inbred mapping populations and can also be used to correct linkage phase errors in ABH formatted datasets.

  6. ParentChecker: a computer program for automated inference of missing parental genotype calls and linkage phase correction

    Directory of Open Access Journals (Sweden)

    Hu Zhiqiu

    2012-02-01

    Full Text Available Abstract Background Accurate genetic maps are the cornerstones of genetic discovery, but their construction can be hampered by missing parental genotype information. Inference of parental haplotypes and correction of phase errors can be done manually on a one by one basis with the aide of current software tools, but this is tedious and time consuming for the high marker density datasets currently being generated for many crop species. Tools that help automate the process of inferring parental genotypes can greatly speed the process of map building. We developed a software tool that infers and outputs missing parental genotype information based on observed patterns of segregation in mapping populations. When phases are correctly inferred, they can be fed back to the mapping software to quickly improve marker order and placement on genetic maps. Results ParentChecker is a user-friendly tool that uses the segregation patterns of progeny to infer missing genotype information of parental lines that have been used to construct a mapping population. It can also be used to automate correction of linkage phase errors in genotypic data that are in ABH format. Conclusion ParentChecker efficiently improves genetic mapping datasets for cases where parental information is incomplete by automating the process of inferring missing genotypes of inbred mapping populations and can also be used to correct linkage phase errors in ABH formatted datasets.

  7. Graphical representation of life paths to better convey results of decision models to patients.

    Science.gov (United States)

    Rubrichi, Stefania; Rognoni, Carla; Sacchi, Lucia; Parimbelli, Enea; Napolitano, Carlo; Mazzanti, Andrea; Quaglini, Silvana

    2015-04-01

    The inclusion of patients' perspectives in clinical practice has become an important matter for health professionals, in view of the increasing attention to patient-centered care. In this regard, this report illustrates a method for developing a visual aid that supports the physician in the process of informing patients about a critical decisional problem. In particular, we focused on interpretation of the results of decision trees embedding Markov models implemented with the commercial tool TreeAge Pro. Starting from patient-level simulations and exploiting some advanced functionalities of TreeAge Pro, we combined results to produce a novel graphical output that represents the distributions of outcomes over the lifetime for the different decision options, thus becoming a more informative decision support in a context of shared decision making. The training example used to illustrate the method is a decision tree for thromboembolism risk prevention in patients with nonvalvular atrial fibrillation.

  8. Effects of aging on identifying emotions conveyed by point-light walkers.

    Science.gov (United States)

    Spencer, Justine M Y; Sekuler, Allison B; Bennett, Patrick J; Giese, Martin A; Pilz, Karin S

    2016-02-01

    The visual system is able to recognize human motion simply from point lights attached to the major joints of an actor. Moreover, it has been shown that younger adults are able to recognize emotions from such dynamic point-light displays. Previous research has suggested that the ability to perceive emotional stimuli changes with age. For example, it has been shown that older adults are impaired in recognizing emotional expressions from static faces. In addition, it has been shown that older adults have difficulties perceiving visual motion, which might be helpful to recognize emotions from point-light displays. In the current study, 4 experiments were completed in which older and younger adults were asked to identify 3 emotions (happy, sad, and angry) displayed by 4 types of point-light walkers: upright and inverted normal walkers, which contained both local motion and global form information; upright scrambled walkers, which contained only local motion information; and upright random-position walkers, which contained only global form information. Overall, emotion discrimination accuracy was lower in older participants compared with younger participants, specifically when identifying sad and angry point-light walkers. In addition, observers in both age groups were able to recognize emotions from all types of point-light walkers, suggesting that both older and younger adults are able to recognize emotions from point-light walkers on the basis of local motion or global form.

  9. Distribution of human papillomavirus (HPV genotypes and bacterial vaginosis presence in cervical samples from Paraguayan indigenous

    Directory of Open Access Journals (Sweden)

    Pamela Mongelos

    2015-10-01

    Conclusions: A large variety of HPV genotypes was detected and showed a slightly different pattern from previous studies on urban women in Paraguay, with the predominance of HR-HPV. Furthermore, the information of co-infections involved in BV could be useful for the improvement of national prevention programs, as well as for laboratory surveillance of these genital infections.

  10. Evaluating hybrid poplar rooting. I. genotype x environment interactions in three contrasting sites

    Science.gov (United States)

    Ronald S., Jr. Zalesny; Don E. Riemenschneider; Richard B. Hall

    2002-01-01

    We need to learn more about environmental conditions that promote or hinder rooting of unrooted dormant hybrid poplar cuttings. Planting cuttings and recording survival after the growing season is not suitable to keep up with industrial demands for improved stock. This method does not provide information about specific genotype x environment interactions. We know very...

  11. Responses of inulin content and inulin yield of Jerusalem artichoke genotypes to seasonal environments

    Science.gov (United States)

    Seasonal variation (e.g. temperature and photoperiod) between growing seasons might affect inulin content and inulin yield of Jerusalem artichoke. However, there is limited information on genotypic response to seasons for inulin content and inulin yield. The objective of this study was to investig...

  12. Alcohol consumption, alcohol dehydrogenase 1C (ADH1C) genotype, and risk of colorectal cancer in the Netherlands Cohort Study on diet and cancer

    NARCIS (Netherlands)

    Bongaerts, B.W.C.; Goeij, A.F.P.M. de; Wouters, K.A.D.; Engeland, M. van; Gottschalk, R.W.H.; Schooten, F.J. van; Goldbohm, R.A.; Brandt, P.A. van den; Weijenberg, M.P.

    2011-01-01

    Within the Netherlands Cohort Study (1986), we examined associations between alcohol consumption, the alcohol dehydrogenase 1C (ADH1C) genotype, and risk of colorectal cancer (CRC). After a follow-up period of 7.3 years, 594 CRC cases with information on genotype and baseline alcohol intake were

  13. Specificity of the Linear Array HPV Genotyping Test for detecting human papillomavirus genotype 52 (HPV-52)

    OpenAIRE

    Kocjan, Boštjan; Poljak, Mario; Oštrbenk, Anja

    2015-01-01

    Introduction: HPV-52 is one of the most frequent human papillomavirus (HPV) genotypes causing significant cervical pathology. The most widely used HPV genotyping assay, the Roche Linear Array HPV Genotyping Test (Linear Array), is unable to identify HPV- 52 status in samples containing HPV-33, HPV-35, and/or HPV-58. Methods: Linear Array HPV-52 analytical specificity was established by testing 100 specimens reactive with the Linear Array HPV- 33/35/52/58 cross-reactive probe, but not with the...

  14. Use of supplementary genotypes in AMMI analysis.

    Science.gov (United States)

    Pacheco, R M; Duarte, J B; Vencovsky, R; Pinheiro, J B; Oliveira, A B

    2005-03-01

    Improving stability of crop yield in a target production environment is an important breeding objective. It is well known that selection for better stability generally results in lower mean yields and, conversely, that selection for higher mean yields may lead to poorer stability. This paper explores the equivalence between the singular value decomposition used in AMMI analysis and the spectral decomposition used in principal components analysis. This equivalence enables scores of a "supplementary genotype" made up of the highest yield value within each environment to be obtained, and these may serve as the ideal check treatment for selection purposes. These scores are used to (1) display this check in a biplot graph, thereby providing a qualitative comparison with the real genotypes related to their interaction with environments; (2) obtain estimates of the squared distances from the projection of each real genotype to the projection of the "supplementary treatment", thereby allowing conclusions to be made on the yield stability of each real genotype. This procedure was effective in identifying the most stable soybean cultivars in an example shown for illustration.

  15. Polyembryony in non-apomictic citrus genotypes

    Science.gov (United States)

    Aleza, Pablo; Juárez, José; Ollitrault, Patrick; Navarro, Luis

    2010-01-01

    Background and Aims Adventitious embryony from nucellar cells is the mechanism leading to apomixis in Citrus sp. However, singular cases of polyembryony have been reported in non-apomictic genotypes as a consequence of 2x × 4x hybridizations and in vitro culture of isolated nucelli. The origin of the plants arising from the aforementioned processes remains unclear. Methods The genetic structure (ploidy and allelic constitution with microsatellite markers) of plants obtained from polyembryonic seeds arising from 2x × 4x sexual hybridizations and those regenerated from nucellus culture in vitro was systematically analysed in different non-apomictic citrus genotypes. Histological studies were also conducted to try to identify the initiation process underlying polyembryony. Key Results All plants obtained from the same undeveloped seed in 2x × 4x hybridizations resulted from cleavage of the original zygotic embryo. Also, the plants obtained from in vitro nucellus culture were recovered by somatic embryogenesis from cells that shared the same genotype as the zygotic embryos of the same seed. Conclusions It appears that in non-apomictic citrus genotypes, proembryos or embryogenic cells are formed by cleavage of the zygotic embryos and that the development of these adventitious embryos, normally hampered, can take place in vivo or in vitro as a result of two different mechanisms that prevent the dominance of the initial zygotic embryo. PMID:20675656

  16. Phenotyping peanut genotypes for drought tolerance

    Science.gov (United States)

    Drought and heat stress can result in aflatoxin contamination of peanuts especially when this occurs during the last three to six weeks of the growing season. Identifying drought-tolerant genotypes may aid in development of peanuts that are less susceptible to aflatoxin contamination. This study w...

  17. HapMap filter 1.0: A tool to preprocess the HapMap genotypic data for association studies

    OpenAIRE

    2008-01-01

    The International HapMap Project provides a resource of genotypic data on single nucleotide polymorphisms (SNPs), which can be used in various association studies to identify the genetic determinants for phenotypic variations. Prior to the association studies, the HapMap dataset should be preprocessed in order to reduce the computation time and control the multiple testing problem. The less informative SNPs including those with very low genotyping rate and SNPs with rare minor allele frequenc...

  18. Relative - not absolute - judgments of credibility affect susceptibility to misinformation conveyed during discussion.

    Science.gov (United States)

    French, Lauren; Garry, Maryanne; Mori, Kazuo

    2011-01-01

    People remember different details about the same events, and when they discuss events they exchange new - and misleading - information. Discussion can change memory, especially when the source of new information is highly credible. But we do not know whether the effects of credibility are based on absolute judgments - judging a source's credibility independently from our own credibility - or relative judgments - judging a source's credibility only in relation to our own credibility. We addressed this question by manipulating subjects' expectations, leading them to believe that they either had the same, higher or lower "visual acuity" than their partner while they watched a movie together. To create ample opportunities for the pairs to mention misleading details to one another, each member unknowingly saw a different version of the movie. The pairs then discussed some of the critical differences, but not others. Later, everyone took an independent recognition test. Subjects' susceptibility to misinformation depended on their own credibility relative to their partner's, supporting the idea that susceptibility to misinformation depends on relative differences in credibility.

  19. Rotavirus genotypes in sewage treatment plants and in children hospitalized with acute diarrhea in Italy in 2010 and 2011.

    Science.gov (United States)

    Ruggeri, Franco M; Bonomo, Paolo; Ianiro, Giovanni; Battistone, Andrea; Delogu, Roberto; Germinario, Cinzia; Chironna, Maria; Triassi, Maria; Campagnuolo, Rosalba; Cicala, Antonella; Giammanco, Giovanni M; Castiglia, Paolo; Serra, Caterina; Gaggioli, Andrea; Fiore, Lucia

    2015-01-01

    Although the molecular surveillance network RotaNet-Italy provides useful nationwide data on rotaviruses causing severe acute gastroenteritis in children in Italy, scarce information is available on rotavirus circulation in the general Italian population, including adults with mild or asymptomatic infection. We investigated the genotypes of rotaviruses present in urban wastewaters and compared them with those of viral strains from clinical pediatric cases. During 2010 and 2011, 285 sewage samples from 4 Italian cities were tested by reverse transcription-PCRs (RT-PCRs) specific for rotavirus VP7 and VP4 genes. Rotavirus was detected in 172 (60.4%) samples, 26 of which contained multiple rotavirus G (VP7 gene) genotypes, for a total of 198 G types. Thirty-two samples also contained multiple P (VP4 gene) genotypes, yielding 204 P types in 172 samples. Genotype G1 accounted for 65.6% of rotaviruses typed, followed by genotypes G2 (20.2%), G9 (7.6%), G4 (4.6%), G6 (1.0%), G3 (0.5%), and G26 (0.5%). VP4 genotype P[8] accounted for 75.0% of strains, genotype P[4] accounted for 23.0% of strains, and the uncommon genotypes P[6], P[9], P[14], and P[19] accounted for 2.0% of strains altogether. These rotavirus genotypes were also found in pediatric patients hospitalized in the same areas and years but in different proportions. Specifically, genotypes G2, G9, and P[4] were more prevalent in sewage samples than among samples from patients, which suggests either a larger circulation of the latter strains through the general population not requiring medical care or their greater survival in wastewaters. A high level of nucleotide identity in the G1, G2, and G6 VP7 sequences was observed between strains from the environment and those from patients. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

  20. Identification of zoonotic genotypes of Giardia duodenalis.

    Science.gov (United States)

    Sprong, Hein; Cacciò, Simone M; van der Giessen, Joke W B

    2009-12-01

    Giardia duodenalis, originally regarded as a commensal organism, is the etiologic agent of giardiasis, a gastrointestinal disease of humans and animals. Giardiasis causes major public and veterinary health concerns worldwide. Transmission is either direct, through the faecal-oral route, or indirect, through ingestion of contaminated water or food. Genetic characterization of G. duodenalis isolates has revealed the existence of seven groups (assemblages A to G) which differ in their host distribution. Assemblages A and B are found in humans and in many other mammals, but the role of animals in the epidemiology of human infection is still unclear, despite the fact that the zoonotic potential of Giardia was recognised by the WHO some 30 years ago. Here, we performed an extensive genetic characterization of 978 human and 1440 animal isolates, which together comprise 3886 sequences from 4 genetic loci. The data were assembled into a molecular epidemiological database developed by a European network of public and veterinary health Institutions. Genotyping was performed at different levels of resolution (single and multiple loci on the same dataset). The zoonotic potential of both assemblages A and B is evident when studied at the level of assemblages, sub-assemblages, and even at each single locus. However, when genotypes are defined using a multi-locus sequence typing scheme, only 2 multi-locus genotypes (MLG) of assemblage A and none of assemblage B appear to have a zoonotic potential. Surprisingly, mixtures of genotypes in individual isolates were repeatedly observed. Possible explanations are the uptake of genetically different Giardia cysts by a host, or subsequent infection of an already infected host, likely without overt symptoms, with a different Giardia species, which may cause disease. Other explanations for mixed genotypes, particularly for assemblage B, are substantial allelic sequence heterogeneity and/or genetic recombination. Although the zoonotic

  1. Multivariate Analysis of Genotype-Phenotype Association.

    Science.gov (United States)

    Mitteroecker, Philipp; Cheverud, James M; Pavlicev, Mihaela

    2016-04-01

    With the advent of modern imaging and measurement technology, complex phenotypes are increasingly represented by large numbers of measurements, which may not bear biological meaning one by one. For such multivariate phenotypes, studying the pairwise associations between all measurements and all alleles is highly inefficient and prevents insight into the genetic pattern underlying the observed phenotypes. We present a new method for identifying patterns of allelic variation (genetic latent variables) that are maximally associated-in terms of effect size-with patterns of phenotypic variation (phenotypic latent variables). This multivariate genotype-phenotype mapping (MGP) separates phenotypic features under strong genetic control from less genetically determined features and thus permits an analysis of the multivariate structure of genotype-phenotype association, including its dimensionality and the clustering of genetic and phenotypic variables within this association. Different variants of MGP maximize different measures of genotype-phenotype association: genetic effect, genetic variance, or heritability. In an application to a mouse sample, scored for 353 SNPs and 11 phenotypic traits, the first dimension of genetic and phenotypic latent variables accounted for >70% of genetic variation present in all 11 measurements; 43% of variation in this phenotypic pattern was explained by the corresponding genetic latent variable. The first three dimensions together sufficed to account for almost 90% of genetic variation in the measurements and for all the interpretable genotype-phenotype association. Each dimension can be tested as a whole against the hypothesis of no association, thereby reducing the number of statistical tests from 7766 to 3-the maximal number of meaningful independent tests. Important alleles can be selected based on their effect size (additive or nonadditive effect on the phenotypic latent variable). This low dimensionality of the genotype-phenotype map

  2. Reconsidering alternative transportation systems to reach academic conferences and to convey an example to reduce greenhouse gas emissions.

    Science.gov (United States)

    Fois, Mauro; Cuena-Lombraña, Alba; Fristoe, Trevor; Fenu, Giuseppe; Bacchetta, Gianluigi

    2016-12-01

    Scientists are typically responsible for greater greenhouse gas emissions than the general population. These 'extra' emissions are largely due to frequent travel, often by airplane, to professional and academic meetings. In the following commentary, we explore how employing mixed modes of transportation, particularly by prioritizing train travel, can significantly reduce the environmental costs associated with attending conferences. Estimating travel distances for attendants to recent meetings, we demonstrate that the proposed strategy has the potential to decrease emissions, even when considering exotic, remote (and potentially enticing) locations. Our suggestions are easy to implement, can be combined with previous proposals for reducing emissions, and provide an opportunity for scientists to convey an important message to the general public. This message is not confined to our particular example and we hope that it will encourage ecologists, sociologists and other scientists, historians and philosophers to pursue additional creative behavioural solutions in order to reduce our impact on an increasingly stressed ecosphere.

  3. Natural frequency and stability analysis of a pipe conveying fluid with axially moving supports immersed in fluid

    Science.gov (United States)

    Ni, Qiao; Luo, Yangyang; Li, Mingwu; Yan, Hao

    2017-09-01

    Structural model for a slender and uniform pipe conveying fluid, with axially moving supports on both ends, immersed in an incompressible fluid, is formulated. Free vibration and stability of the system are studied through numerical calculation. First, the equations of motion of the system are derived in an absolute coordinate system. An "axial added mass coefficient" is adopted to amend the forces caused by the external fluid. Boundary conditions are fixed by using coordinated conversion. Then, numerical results of the natural frequency are obtained via the Galerkin method, both for pinned-pinned and clamped-clamped supports. The critical speeds of supports and several instability types are discussed. Last, the effects of the system parameters on the dynamics and instability of the system are investigated.

  4. Predicting phase shift effects for vibrating fluid-conveying pipes due to Coriolis forces and fluid pulsation

    DEFF Research Database (Denmark)

    Enz, Stephanie; Thomsen, Jon Juel

    2011-01-01

    displacement and approximate axial shift in vibration phase. The analytical predictions are tested against pure numerical solution using representative examples, showing good agreement. Fluid pulsations are predicted not to influence CFM accuracy, since proper signal filtering is seen to allow......Knowing the influence of fluid flow perturbations on the dynamic behavior of fluid-conveying pipes is of relevance, e.g., when exploiting flow-induced oscillations of pipes to determine the fluids mass flow or density, as done with Coriolis flow meters (CFM). This could be used in the attempts...... the determination of the correct mean phase shift. Large amplitude motions, which could influence CFM robustness, do not appear to be induced by the investigated fluid pulsation. Pulsating fluid of the combination resonance type could, however, influence CFMs robustness, if induced pipe motions go unnoticed...

  5. Radio electric asymmetric conveyer (REAC: A novel neuromodulation technology in Alzheimer’s and other neurodegenerative diseases

    Directory of Open Access Journals (Sweden)

    Salvatore eRinaldi

    2015-02-01

    Full Text Available Global research in the field of pharmacology has not yet found effective drugs to treat Alzheimer's disease. Thus, alternative therapeutic strategies are under investigation, such as neurostimulation by physical means. Radio electric asymmetric conveyer (REAC is one of these technologies and has, until now, been used in clinical studies on several psychiatric and neurological disorders with encouraging results in the absence of side effects. Moreover, studies at the cellular level have shown that REAC technology, with the appropriate protocols, is able to induce neuronal differentiation both in murine embryonic cells and in human adult differentiated cells. Other studies have shown that REAC technology is able to positively influence senescence processes. Studies conducted on Alzheimer's disease (AD patients and in transgenic mouse models have shown promising results, suggesting REAC could be a useful therapy for certain components of AD.

  6. When School and Family Convey Different Cultural Messages: The Experience of Turkish Minority Group Members in France

    Directory of Open Access Journals (Sweden)

    Cristina Aelenei

    2016-06-01

    Full Text Available The present studies aim to compare the cultural values promoted by the French educational system and the Turkish families living in France to their youngsters. Because of their collectivist background Turkish immigrants may convey less individualistic values to their children compared to French parents and teachers. However, Turkish students may become more individualistic as they are socialized in the school system. In study 1 (N = 119, French school teachers, French parents, and Turkish-origin parents had to resolve six dilemmas by choosing either an individualistic or a collectivistic response-option. As expected, French teachers emphasized individualism more than Turkish parents, but not more than French parents. In Study 2 (N = 159, similar dilemmas were presented to French and Turkish-origin pupils. In elementary school, Turkish children were less individualistic than French-born children, but this gap was reduced in high school.

  7. Design of fan beam optical sensor and its application in mass flow rate measurement of pneumatically conveyed solids

    Institute of Scientific and Technical Information of China (English)

    LI Yang; ZHENG Ying-na; YUE Hong-wei

    2005-01-01

    The fan-beam optical sensor is made up of many semiconductor lasers and detectors fixed around the wall alternately at a cross section of pneumatically conveying pipe. When the sensor works, a scanning light source emits a 50° lamellar fan-beam through the gas-solid two phase flow, and the projection data resulting extinction effect of solid particles are detected at the same time. With the projection data, the flow rate mass can be calculated, and then the flow image can be reconstructed. In this paper, the design of the sensor including spatial arrangement of the structural parts, basic principle and measurement sensitivity distribution are introduced. The mathematical measurement model of solid mass flow rate is presented together with the testing results.

  8. Wave propagation in fluid-conveying viscoelastic single-walled carbon nanotubes with surface and nonlocal effects

    Science.gov (United States)

    Zhen, Ya-Xin

    2017-02-01

    In this paper, the transverse wave propagation in fluid-conveying viscoelastic single-walled carbon nanotubes is investigated based on nonlocal elasticity theory with consideration of surface effect. The governing equation is formulated utilizing nonlocal Euler-Bernoulli beam theory and Kelvin-Voigt model. Explicit wave dispersion relation is developed and wave phase velocities and frequencies are obtained. The effect of the fluid flow velocity, structural damping, surface effect, small scale effects and tube diameter on the wave propagation properties are discussed with different wave numbers. The wave frequency increases with the increase of fluid flow velocity, but decreases with the increases of tube diameter and wave number. The effect of surface elasticity and residual surface tension is more significant for small wave number and tube diameter. For larger values of wave number and nonlocal parameters, the real part of frequency ratio raises.

  9. 皮带机故障分析及处理%Failures Analysis and Disposal on Belt Conveyer

    Institute of Scientific and Technical Information of China (English)

    胡文举

    2012-01-01

    The belt conveyor is a type of material conveying machine. It is widely used in salt field because of its advantages of large transportation capacity, simple structure, easy maintaining , low cost, general purpose and so on. The reasons for failures and the methods for disposal are analyzed in the article.%皮带机作为运输机械,以其输送量大、结构简单、维护方便、成本低、通用性强等优点,在盐场应用相当广泛.文章分析了皮带机常见故障产生的原因及其处理方法.

  10. A study of the pneumatic conveying of non-spherical particles in a turbulent horizontal channel flow

    Directory of Open Access Journals (Sweden)

    S. Laín

    2007-12-01

    Full Text Available In this work, the pneumatic conveying of non-spherical isometric particles with different degrees of non-sphericity is studied. The solids mass loading fraction is small enough in order to have a dilute flow, so inter-particle collisions can be neglected. As a first approximation, only the aerodynamic drag force acting on the particles is considered, neglecting the lift forces and the particle rotation. The drag coefficient is calculated using the correlations of Haider and Levenspiel (1989 and Ganser (1993. The numerical simulations are compared with experimental data in a narrow six meters long horizontal channel flow laden with quartz and duroplastic particles with mean diameters of 185 and 240 mu m, respectively (Kussin, 2004.

  11. Detection of bovine leukemia virus and identification of its genotype in Mongolian cattle.

    Science.gov (United States)

    Ochirkhuu, Nyamsuren; Konnai, Satoru; Odbileg, Raadan; Nishimori, Asami; Okagawa, Tomohiro; Murata, Shiro; Ohashi, Kazuhiko

    2016-04-01

    Epidemiological studies have indicated that bovine leukemia virus (BLV) infection is globally distributed. However, no information regarding the disease and genetic diversity of the virus in the cattle of Mongolia is currently available. In this study, the prevalence of BLV was assessed using PCR, and the genetic diversity was analyzed through DNA sequencing. Of the 517 samples tested, 20 positives were identified. Phylogenetic analysis showed that six, one, and four isolates were classified into genotype 4, 7, and 1, respectively. Most isolates were clustered with isolates from Eastern Europe and Russia. This study is the first to investigate the BLV genotype in Mongolia.

  12. The potential of plant viruses to promote genotypic diversity via genotype x environment interactions

    DEFF Research Database (Denmark)

    van Mölken, Tamara; Stuefer, Josef F.

    2011-01-01

    † Background and Aims Genotype by environment (G × E) interactions are important for the long-term persistence of plant species in heterogeneous environments. It has often been suggested that disease is a key factor for the maintenance of genotypic diversity in plant populations. However, empirical...... evidence for this contention is scarce. Here virus infection is proposed as a possible candidate for maintaining genotypic diversity in their host plants. † Methods The effects of White clover mosaic virus (WClMV) on the performance and development of different Trifolium repens genotypes were analysed...... and the G × E interactions were examined with respect to genotypespecific plant responses to WClMV infection. Thus, the environment is defined as the presence or absence of the virus. † Key Results WClMV had a negative effect on plant performance as shown by a decrease in biomass and number of ramets...

  13. Tracer Experimental Study of the Main Conveying Conduits of CCl4 Pollutant in the Qiligou Water Supply Resource

    Institute of Scientific and Technical Information of China (English)

    PEI Zong-ping; HAN Bao-ping; LIU Han-hu; LIANG Zhi; ZHOU Dong-lai; ZHU Xue-qiang

    2007-01-01

    The Ordovician karst groundwater in the Qiligou basin is an important water supply source. This groundwater has been seriously contaminated in recent years by CCl4 from a pesticide plant located in the recharge area. The highest concentration of CCl4 in the groundwater is 3909.2 μg/L. Large scale tracer experiments were carried out to study the conveying conduits for CCl4 in the basin on May 1-6, 2005. Nontoxic, edible glucose was used as a tracer and it was detected by spectrophotometric techniques. Well X-61, located near the pesticide plant in the southern recharge area of the basin, was employed for injecting the tracer. Ten wells widely located in the groundwater runoff area were used as observing and sampling wells. The results show that the migration of the pollutants is controlled by the water hydrodynamic field and by the development of karst conduits. The tracer did not enter the up-drainage wells, X-49 and X-47, near the injection point because the water levels at these wells are higher than at the injection point. The adjacent well X-62 is close to the injection site, but the tracer reached the well after eleven hours. Wells X-43, X-59, X-58, YY-1 and X-57, located in the syncline axis runoff area, are respectively 2.5, 3.5, 4.33, 4.38 and 5.44 kilometers from the injection site. The time for initial appearance of tracer was 4, 4, 2, 6 and 4 hours, respectively. The maximum runoff velocity (well X-58) is over two kilometers per hour, indicating that the karst conduits are well developed along the syncline basin axis. These conduits are the main conveying conduits for groundwater and CCl4. Closer wells were not necessarily the first to receive tracer. This shows the inhomogeneity in karst development which causes complex runoff, and pollutant migration, patterns.

  14. Yield stability and relationships among stability parameters in faba bean(Vicia faba L.) genotypes

    Institute of Scientific and Technical Information of China (English)

    Tamene; Temesgen; Gemechu; Keneni; Tadese; Sefera; Mussa; Jarso

    2015-01-01

    Sixteen faba bean genotypes were evaluated in 13 environments in Ethiopia during the main cropping season for three years(2009–2011). The objectives of the study were to evaluate the yield stability of the genotypes and the relative importance of different stability parameters for improving selection in faba bean. The study was conducted using a randomized complete block design with four replications. G × E interaction and yield stability were estimated using 17 different stability parameters. Pooled analysis of variance for grain yield showed that the main effects of both genotypes and environments, and the interaction effect, were highly significant(P ≤ 0.001) and(P ≤ 0.01), respectively. The environment main effect accounted for 89.27% of the total yield variation, whereas genotype and G × E interaction effects accounted for 2.12% and 3.31%, respectively.Genotypic superiority index(Pi) and FT3 were found to be very informative for selecting both high-yielding and stable faba bean genotypes. Twelve of the 17 stability parameters,including CVi, RS, α, λ, S2 di, bi, S(2)i, Wi, σ2i, EV, P59, and ASV, were influenced simultaneously by both yield and stability. They should accordingly be used as complementary criteria to select genotypes with high yield and stability. Although none of the varieties showed consistently superior performance across all environments, the genotype EK 01024-1-2ranked in the top third of the test entries in 61.5% of the test environments and was identified as the most stable genotype, with type I stability. EK 01024-1-2 also showed a17.0% seed size advantage over the standard varieties and was released as a new variety in2013 for wide production and named "Gora". Different stability parameters explained genotypic performance differently, irrespective of yield performance. It was accordingly concluded that assessment of G × E interaction and yield stability should not be based on a single or a few stability parameters but rather

  15. Yield stability and relationships among stability parameters in faba bean (Vicia faba L. genotypes

    Directory of Open Access Journals (Sweden)

    Tamene Temesgen

    2015-06-01

    Full Text Available Sixteen faba bean genotypes were evaluated in 13 environments in Ethiopia during the main cropping season for three years (2009–2011. The objectives of the study were to evaluate the yield stability of the genotypes and the relative importance of different stability parameters for improving selection in faba bean. The study was conducted using a randomized complete block design with four replications. G × E interaction and yield stability were estimated using 17 different stability parameters. Pooled analysis of variance for grain yield showed that the main effects of both genotypes and environments, and the interaction effect, were highly significant (P ≤ 0.001 and (P ≤ 0.01, respectively. The environment main effect accounted for 89.27% of the total yield variation, whereas genotype and G × E interaction effects accounted for 2.12% and 3.31%, respectively. Genotypic superiority index (Pi and FT3 were found to be very informative for selecting both high-yielding and stable faba bean genotypes. Twelve of the 17 stability parameters, including CVi, RS, α, λ, S2di, bi, Si(2, Wi, σi2, EV, P59, and ASV, were influenced simultaneously by both yield and stability. They should accordingly be used as complementary criteria to select genotypes with high yield and stability. Although none of the varieties showed consistently superior performance across all environments, the genotype EK 01024-1-2 ranked in the top third of the test entries in 61.5% of the test environments and was identified as the most stable genotype, with type I stability. EK 01024-1-2 also showed a 17.0% seed size advantage over the standard varieties and was released as a new variety in 2013 for wide production and named “Gora”. Different stability parameters explained genotypic performance differently, irrespective of yield performance. It was accordingly concluded that assessment of G × E interaction and yield stability should not be based on a single or a few

  16. Yield stability and relationships among stability parameters in faba bean (Vicia faba L.) genotypes

    Institute of Scientific and Technical Information of China (English)

    Tamene Temesgen; Gemechu Keneni; Tadese Sefera; Mussa Jarso

    2015-01-01

    Sixteen faba bean genotypes were evaluated in 13 environments in Ethiopia during the main cropping season for three years (2009–2011). The objectives of the study were to evaluate the yield stability of the genotypes and the relative importance of different stability parameters for improving selection in faba bean. The study was conducted using a randomized complete block design with four replications. G × E interaction and yield stability were estimated using 17 different stability parameters. Pooled analysis of variance for grain yield showed that the main effects of both genotypes and environments, and the interaction effect, were highly significant (P≤0.001) and (P≤0.01), respectively. The environment main effect accounted for 89.27% of the total yield variation, whereas genotype and G × E interaction effects accounted for 2.12% and 3.31%, respectively. Genotypic superiority index (Pi) and FT3 were found to be very informative for selecting both high-yielding and stable faba bean genotypes. Twelve of the 17 stability parameters, including CVi, RS,α,λ, S2di, bi, Si(2), Wi,σi2, EV, P59, and ASV, were influenced simultaneously by both yield and stability. They should accordingly be used as complementary criteria to select genotypes with high yield and stability. Although none of the varieties showed consistently superior performance across all environments, the genotype EK 01024-1-2 ranked in the top third of the test entries in 61.5% of the test environments and was identified as the most stable genotype, with type I stability. EK 01024-1-2 also showed a 17.0%seed size advantage over the standard varieties and was released as a new variety in 2013 for wide production and named “Gora”. Different stability parameters explained genotypic performance differently, irrespective of yield performance. It was accordingly concluded that assessment of G × E interaction and yield stability should not be based on a single or a few stability parameters but

  17. Secondary taste neurons that convey sweet taste and starvation in the Drosophila brain.

    Science.gov (United States)

    Kain, Pinky; Dahanukar, Anupama

    2015-02-18

    The gustatory system provides vital sensory information to determine feeding and appetitive learning behaviors. Very little is known, however, about higher-order gustatory circuits in the highly tractable model for neurobiology, Drosophila melanogaster. Here we report second-order sweet gustatory projection neurons (sGPNs) in the Drosophila brain using a powerful behavioral screen. Silencing neuronal activity reduces appetitive behaviors, whereas inducible activation results in food acceptance via proboscis extensions. sGPNs show functional connectivity with Gr5a(+) sweet taste neurons and are activated upon sucrose application to the labellum. By tracing sGPN axons, we identify the antennal mechanosensory and motor center (AMMC) as an immediate higher-order processing center for sweet taste. Interestingly, starvation increases sucrose sensitivity of the sGPNs in the AMMC, suggesting that hunger modulates the responsiveness of the secondary sweet taste relay. Together, our results provide a foundation for studying gustatory processing and its modulation by the internal nutrient state.

  18. Information mirages and financial contagion in an asset market experiment

    NARCIS (Netherlands)

    Noussair, Charles; Xu, Yilong

    2015-01-01

    Purpose – The purpose of this paper is to consider whether asymmetric information about correlations between assets can induce financial contagion. Contagion, unjustified by fundamentals, would arise if participants react in one market to uninformative trades in the other market that actually convey

  19. Prenuclear Accentuation in English: Phonetics, Phonology, Information Structure

    Science.gov (United States)

    Bishop, Jason Brandon

    2013-01-01

    A primary function of prosody in many languages is to convey information structure--the "packaging" of a sentence's content into categories such as "focus", "given" and "topic". In English and other West Germanic languages it is widely assumed that focus is signaled prosodically by the location of a…

  20. Prenuclear Accentuation in English: Phonetics, Phonology, Information Structure

    Science.gov (United States)

    Bishop, Jason Brandon

    2013-01-01

    A primary function of prosody in many languages is to convey information structure--the "packaging" of a sentence's content into categories such as "focus", "given" and "topic". In English and other West Germanic languages it is widely assumed that focus is signaled prosodically by the location of a…

  1. Hepatitis C Virus Genotype Diversity among Intravenous Drug Users in Yunnan Province, Southwestern China

    Science.gov (United States)

    Wu, Wenlong; Feng, Ruilin; Wu, Zhongxiang; Cun, Wei; Dong, Shaozhong

    2013-01-01

    Background Recently, high proportions (15.6%–98.7%) of intravenous drug users (IDUs) in China were found to be positive for hepatitis C virus (HCV). Yunnan Province is located in southwestern China and borders one of the world's most important opium-producing regions, thus it is an important drug trafficking route to other regions of China. Methodology/Principal Findings Here, we assessed 100 HCV-positive plasma samples from IDUs who were enrolled through the Kunming Center for Disease Control and Prevention in 2012. HCV C/E1 fragments were PCR-amplified and sequenced. We identified eight HCV subtypes (1a, 1b, 3a, 3b, 6a, 6n, 6u and 6v), of which genotype 6 was most predominant (frequency, 47%) followed by genotypes 3 (41%) and 1 (12%). HCV subtypes 6n (30%) and 3b (29%) were most common and were identified in 59% of the IDUs. We compared HCV genotypes among IDUs in Yunnan Province with those from other regions and found that the distribution patterns of HCV genotypes in Yunnan Province were similar to those in southern China, but different from those in eastern China. However, the distribution patterns of HCV subtypes varied among Yunnan Province and southern China, despite the shared similar genotypes. A comparison of the current data with those previously reported showed that the frequency of HCV genotype 6 increased from 25% to 47% within 5 years, especially subtypes 6a (5% to 15%) and 6n (11.2% to 30%). In contrast, the frequencies of subtypes 3b and 1b decreased by almost 50% within 5 years. Conclusion/Significance Our results provided further information to support the assertion that drug trafficking routes influence HCV transmission patterns among IDUs in Yunnan Province. The frequency of HCV genotypes and subtypes changed rapidly among IDUs in Yunnan Province and subtypes 6a and 6n may have originated in Vietnam and Myanmar, respectively. PMID:24358211

  2. Hepatitis C virus genotype diversity among intravenous drug users in Yunnan Province, Southwestern China.

    Directory of Open Access Journals (Sweden)

    Zhihui Zhang

    Full Text Available BACKGROUND: Recently, high proportions (15.6%-98.7% of intravenous drug users (IDUs in China were found to be positive for hepatitis C virus (HCV. Yunnan Province is located in southwestern China and borders one of the world's most important opium-producing regions, thus it is an important drug trafficking route to other regions of China. METHODOLOGY/PRINCIPAL FINDINGS: Here, we assessed 100 HCV-positive plasma samples from IDUs who were enrolled through the Kunming Center for Disease Control and Prevention in 2012. HCV C/E1 fragments were PCR-amplified and sequenced. We identified eight HCV subtypes (1a, 1b, 3a, 3b, 6a, 6n, 6u and 6v, of which genotype 6 was most predominant (frequency, 47% followed by genotypes 3 (41% and 1 (12%. HCV subtypes 6n (30% and 3b (29% were most common and were identified in 59% of the IDUs. We compared HCV genotypes among IDUs in Yunnan Province with those from other regions and found that the distribution patterns of HCV genotypes in Yunnan Province were similar to those in southern China, but different from those in eastern China. However, the distribution patterns of HCV subtypes varied among Yunnan Province and southern China, despite the shared similar genotypes. A comparison of the current data with those previously reported showed that the frequency of HCV genotype 6 increased from 25% to 47% within 5 years, especially subtypes 6a (5% to 15% and 6n (11.2% to 30%. In contrast, the frequencies of subtypes 3b and 1b decreased by almost 50% within 5 years. CONCLUSION/SIGNIFICANCE: Our results provided further information to support the assertion that drug trafficking routes influence HCV transmission patterns among IDUs in Yunnan Province. The frequency of HCV genotypes and subtypes changed rapidly among IDUs in Yunnan Province and subtypes 6a and 6n may have originated in Vietnam and Myanmar, respectively.

  3. Probing Phosphorus Efficient Low Phytic Acid Content Soybean Genotypes with Phosphorus Starvation in Hydroponics Growth System.

    Science.gov (United States)

    Kumar, Varun; Singh, Tiratha Raj; Hada, Alkesh; Jolly, Monica; Ganapathi, Andy; Sachdev, Archana

    2015-10-01

    Phosphorus is an essential nutrient required for soybean growth but is bound in phytic acid which causes negative effects on both the environment as well as the animal nutrition. Lowering of phytic acid levels is associated with reduced agronomic characteristics, and relatively little information is available on the response of soybean plants to phosphorus (P) starvation. In this study, we evaluated the effects of different P starvation concentrations on the phytic acid content, growth, and yield of seven mutant genotypes along with the unirradiated control, JS-335, in a hydroponics growth system. The low phytic acid containing mutant genotypes, IR-JS-101, IR-DS-118, and IR-V-101, showed a relatively high growth rate in low P concentration containing nutrient solution (2 μM), whereas the high P concentration (50 μM) favored the growth of IR-DS-111 and IR-DS-115 mutant genotypes containing moderate phytate levels. The mutant genotypes with high phytic acid content, IR-DS-122, IR-DS-114, and JS-335, responded well under P starvation and did not have any significant effect on the growth and yield of plants. Moreover, the reduction of P concentration in nutrient solution from 50 to 2 μM also reduced the phytic acid content in the seeds of all the soybean genotypes under study. The desirable agronomic performance of low phytic acid containing mutant genotype IR-DS-118 reported in this study suggested it to be a P-efficient genotype which could be considered for agricultural practices under P limiting soils.

  4. ACTN3 R577X Genotypes Associate with Class II and Deep Bite Malocclusions

    Science.gov (United States)

    Zebrick, Brian; Teeramongkolgul, Teesit; Nicot, Romain; Horton, Michael J.; Raoul, Gwenael; Ferri, Joel; Vieira, Alexandre R.; Sciote, James J.

    2014-01-01

    Introduction α-actinins are myofibril anchor proteins which influence contractile properties of skeletal muscle. ACTN2 is expressed in slow type I and fast type II fibers whereas ACTN3 is expressed only in fast fibers. ACTN3 homozygosity for the 577X stop codon (i.e. changing 577RR to 577XX - the R577X polymorphism) results in the absence of α-actinin-3 in about 18% of Europeans, diminished fast contractile ability, enhanced endurance performance and reduced bone mass or bone mineral density. We have examined ACTN3 expression and genetic variation in masseter muscle of orthognathic surgery patients to determine genotype associations with malocclusion. Methods Clinical information, masseter muscle biopsies and saliva samples were obtained from 60 subjects. Genotyping for ACTN3 SNPs, RT-PCR quantitation of muscle gene message and muscle morphometric fiber type properties were compared to determine statistical differences between genotype and phenotype. Results Muscle mRNA expression level was significantly different for ACTN3 SNP genotypes (p<0.01). The frequency of ACTN3 genotypes was significantly different for sagittal and vertical classifications of malocclusion with the clearest association being elevated 577XX genotype in skeletal class II malocclusion (p = 0.003). This genotype also resulted in significantly smaller diameter of fast type II fibers in masseter muscle (p = 0.002). Conclusion ACTN3 577XX is overrepresented in skeletal class II malocclusion, suggesting a biologic influence during bone growth. ACTN3 577XX is underrepresented in deep bite malocclusion, suggesting muscle differences contribute to variations in vertical facial dimensions. PMID:25439211

  5. New coxsackievirus B4 genotype circulating in Inner Mongolia Autonomous Region, China.

    Directory of Open Access Journals (Sweden)

    Xiaoling Tian

    Full Text Available Hand, foot, and mouth disease (HFMD surveillance was initiated in the Inner Mongolia Autonomous Region of China in 2007, a crucial scrutiny for monitoring the prevalence of enterovirus serotypes associated with HFMD patients. However, this surveillance mostly focused on enterovirus 71 (EV-A71 and coxsackievirus A16; therefore, information on other enterovirus serotypes is limited. To identify the other circulating enterovirus serotypes in the HFMD outbreaks in Inner Mongolia in 2010, clinical samples from HFMD patients were investigated. Six coxsackievirus B4 (CVB4 strains were isolated and phylogenetic analyses of VP1 sequences were performed. Full-length genome sequences of two representative CVB4 isolates were acquired and similarity plot and bootscanning analyses were performed. The phylogenetic dendrogram indicated that all CVB4 strains could be divided into 5 genotypes (Genotypes I-V with high bootstrap support (90-100%. The CVB4 prototype strain (JVB was the sole member of genotype I. CVB4 strains belonging to genotype II, which were once common in Europe and the Americas, seemingly disappeared and gave way to genotype III and IV strains, which appear to be the dominant circulating strains in the world. All Chinese CVB4 strains belonged to Genotype V, a newly identified genotype supported by a high bootstrap value (100%, and are circulating only in mainland of China. Intertypic recombination occurred in the Chinese CVB4 strains with novel unknown serotype EV-B donor sequences. Two Chinese CVB4 strains had a virulent residue at position 129 of VP1, and one strain also had a virulent residue at position 16 of VP4. Increased surveillance is needed to monitor the emergence of new genetic lineages of enteroviruses in areas that are often associated with large-scale outbreaks. In addition, continued monitoring of enteroviruses by clinical surveillance and genetic characterization should be enhanced.

  6. How to Relate Complex DNA Repair Genotypes to Pathway Function and, Ultimately, Health Risk

    Energy Technology Data Exchange (ETDEWEB)

    Jones, IM

    2002-01-09

    Exposure to ionizing radiation increases the incidence of cancer. However, predicting which individuals are at most risk from radiation exposure is a distant goal. Predictive ability is needed to guide policies that regulate radiation exposure and ensure that medical treatments have maximum benefit and minimum risk. Differences between people in susceptibility to radiation are largely based on their genotype, the genes inherited from their parents. Among the important genes are those that produce proteins that repair DNA damaged by radiation. Base Excision Repair (BER) proteins repair single strand breaks and oxidized bases in DNA. Double Strand Break Repair proteins repair broken chromosomes. Using technologies and information from the Human Genome Project, we have previously determined that the DNA sequence of DNA repair genes varies within the human population. An average of 3-4 different variants were found that affect the protein for each of 37 genes studied. The average frequency of these variants is 5%. Given the many genes in each DNA repair pathway and their many variants, technical ability to determine an individual's repair genotype greatly exceeds ability to interpret the information. A long-term goal is to relate DNA repair genotypes to health risk from radiation. This study focused on the BER pathway. The BER genes are known, variants of the genes have been identified at LLNL, and LLNL had recently developed an assay for BER function using white blood cells. The goal of this initial effort was to begin developing data that could be used to test the hypothesis that many different genotypes have similar DNA repair capacity phenotypes (function). Relationships between genotype and phenotype could then be used to group genotypes with similar function and ultimately test the association of groups of genotypes with health risk from radiation. Genotypes with reduced repair function are expected to increase risk of radiation-induced health effects. The

  7. Identification of Mendelian inconsistencies between SNP and pedigree Information of Sibs

    NARCIS (Netherlands)

    Calus, M.P.L.; Mulder, H.A.; Bastiaansen, J.W.M.

    2011-01-01

    Background Using SNP genotypes to apply genomic selection in breeding programs is becoming common practice. Tools to edit and check the quality of genotype data are required. Checking for Mendelian inconsistencies makes it possible to identify animals for which pedigree information and genotype info

  8. Identification of Mendelian inconsistencies between SNP and pedigree Information of Sibs

    NARCIS (Netherlands)

    Calus, M.P.L.; Mulder, H.A.; Bastiaansen, J.W.M.

    2011-01-01

    Background Using SNP genotypes to apply genomic selection in breeding programs is becoming common practice. Tools to edit and check the quality of genotype data are required. Checking for Mendelian inconsistencies makes it possible to identify animals for which pedigree information and genotype

  9. HPV genotypes in invasive cervical cancer in Danish women

    DEFF Research Database (Denmark)

    Kirschner, Benny; Junge, Jette; Holl, Katsiaryna

    2013-01-01

    Human papillomavirus (HPV) genotype distribution in invasive cervical cancers may differ by geographic region. The primary objective of this study was to estimate HPV-genotype distribution in Danish women with a diagnosis of invasive cervical cancer....

  10. Agronomical and phytochemical evaluation of Stevia rebaudiana genotypes

    National Research Council Canada - National Science Library

    Vouillamoz, José F; Wolfram-Schilling, Evelyn; Carron, Claude-Alain; Baroffio, Catherine A

    2016-01-01

    The agronomical potential and the phytochemical variability of 18 genotypes of the Paraguayan plant Stevia rebaudiana have been investigated in Switzerland in order identify the best genotype for local cultivation...

  11. Resistance of corn genotypes to fall armyworm Spodoptera ...

    African Journals Online (AJOL)

    Tuoyo Aghomotsegin

    2016-08-31

    Aug 31, 2016 ... The objective of this study was to evaluate resistance mechanisms in 12 corn genotypes (transgenic hybrids: ..... FAW that fed on GM corn genotypes exhibited lower ... preference for other food types, particularly given the.

  12. Comparison and suitability of genotype by environment analysis ...

    African Journals Online (AJOL)

    ACSS

    showed that genotype by environment interactions were significant at p<0.05 for grain .... Genotype by environment analysis methods for yield-related traits of pearl millet ...... PhD Thesis, Louisiana State ... set of sweet potato clones evaluated.

  13. Genotype W environment interaction effects on some physiological ...

    African Journals Online (AJOL)

    Genotype W environment interaction effects on some physiological yield ... Ghana Journal of Agricultural Science ... study the yield basis and environmental effects on 31cowpea genotypes of early, medium and late maturities. ... Article Metrics.

  14. SNPs genotyping technologies and their applications in farm animals breeding programs: review

    Directory of Open Access Journals (Sweden)

    Hamed Kharrati Koopaee

    2014-02-01

    Full Text Available Single nucleotide polymorphisms (SNPs are DNA sequence variations that occur when a single nucleotide: adenine (A, thymine (T, cytosine (C or guanine (G in the genome sequence is altered. Traditional and high throughput methods are two main strategies for SNPs genotyping. The SNPs genotyping technologies provide powerful resources for animal breeding programs.Genomic selection using SNPs is a new tool for choosing the best breeding animals. In addition, the high density maps using SNPs can provide useful genetic tools to study quantitative traits genetic variations. There are many sources of SNPs and exhaustive numbers of methods of SNP detection to be considered. For many traits in farm animals, the rate of genetic improvement can be nearly doubled when SNPs information is used compared to the current methods of genetic evaluation. The goal of this review is to characterize the SNPs genotyping methods and their applications in farm animals breeding.

  15. Stomata morphological traits in two different genotypes of Populus nigra L.

    Directory of Open Access Journals (Sweden)

    Russo G

    2015-08-01

    Full Text Available Populus nigra L. (black poplar possesses amphistomatic leaves, with large (giant and normal sized stomata. The role of giant stomata in leaf development, and the consequences on stomatal density in adult leaves remains elusive. This paper describes the characteristics of ordinary and giant stomata in leaves of two black poplar genotypes (58-861 with large leaves from northern Italy, and Poli with small leaves from southern Italy. Stomatal traits in both genotypes were studied using light microscopy on mature leaf adaxial and abaxial epidermal impressions. Moreover, scanning electron microscopy was applied to study giant and normal stomata in early, young, and mature leaves. Leaf abaxial surfaces in the two genotypes revealed variable sizes and patterns of stomata related to differences in intrinsic water use efficiency (Wi. These observations provided evidence of different stomatal types in mature black poplar leaves, and new information regarding the presence and potential role of giant stomata in black poplar leaves.

  16. Genotype 3 is the predominant hepatitis C genotype in a multi-ethnic Asian population in Malaysia.

    Science.gov (United States)

    Ho, Shiaw-Hooi; Ng, Kee-Peng; Kaur, Harvinder; Goh, Khean-Lee

    2015-06-01

    Genotypes of hepatitis C virus (HCV) are distributed differently across the world. There is a paucity of such data in a multi-ethnic Asian population like Malaysia. The objectives of this study were to determine the distribution of HCV genotypes between major ethnic groups and to ascertain their association with basic demographic variables like age and gender. This was a cross-sectional prospective study conducted from September 2007 to September 2013. Consecutive patients who were detected to have anti-HCV antibodies in the University of Malaya Medical Centre were included and tested for the presence of HCV RNA using Roche Cobas Amplicor Analyzer and HCV genotype using Roche single Linear Array HCV Genotyping strip. Five hundred and ninety-six subjects were found to have positive anti-HCV antibodies during this period of time. However, only 396 (66.4%) were HCV RNA positive and included in the final analysis. Our results showed that HCV genotype 3 was the predominant genotype with overall frequency of 61.9% followed by genotypes 1 (35.9%), 2 (1.8%) and 6 (0.5%). There was a slightly higher prevalence of HCV genotype 3 among the Malays when compared to the Chinese (P=0.043). No other statistical significant differences were observed in the distribution of HCV genotypes among the major ethnic groups. There was also no association between the predominant genotypes and basic demographic variables. In a multi-ethnic Asian society in Malaysia, genotype 3 is the predominant genotype among all the major ethnic groups with genotype 1 as the second commonest genotype. Both genotypes 2 and 6 are uncommon. Neither genotype 4 nor 5 was detected. There is no identification of HCV genotype according to ethnic origin, age and gender.

  17. Morphology and viability of castor bean genotypes pollen grains

    Directory of Open Access Journals (Sweden)

    Maria Selma Alves Silva Diamantino

    2016-01-01

    Full Text Available The objective of this work was to characterize the morphology and viability of the pollen of 15 genotypes of castor bean (Ricinus communis L. and to generate information that can assist in the selection of highly promising male parents for future use in genetic improvement programs aimed at producing seeds for oil extraction. Acetolysis and scanning electron microscopy was used to characterize the morphology of the pollen. The viability of the pollen grains was estimated by in vitro germination and colorimetric analysis (acetocarmine 2% and 2, 3, 5-triphenyltetrazolium chloride 1%. For the in vitro germination, pollen grains were grown in 10 types of solidified culture medium consisting of different concentrations of sucrose, boric acid, calcium nitrate, magnesium sulfate and potassium nitrate. The pollen grains had the following characteristics: medium size, isopolar and subspheroidal shape, radial symmetry, circular ambit, 3-colporate, elongated endoapertures, tectate exine and granulated sexine. The acetocarmine dye overestimated pollen viability. The media M5 and M8 were the most efficient at promoting the germination of pollen grains. The studied genotypes had high levels of viability and can therefore be used as male parents in genetic improvement programs.

  18. The Mouse Universal Genotyping Array: From Substrains to Subspecies

    Directory of Open Access Journals (Sweden)

    Andrew P. Morgan

    2016-02-01

    Full Text Available Genotyping microarrays are an important resource for genetic mapping, population genetics, and monitoring of the genetic integrity of laboratory stocks. We have developed the third generation of the Mouse Universal Genotyping Array (MUGA series, GigaMUGA, a 143,259-probe Illumina Infinium II array for the house mouse (Mus musculus. The bulk of the content of GigaMUGA is optimized for genetic mapping in the Collaborative Cross and Diversity Outbred populations, and for substrain-level identification of laboratory mice. In addition to 141,090 single nucleotide polymorphism probes, GigaMUGA contains 2006 probes for copy number concentrated in structurally polymorphic regions of the mouse genome. The performance of the array is characterized in a set of 500 high-quality reference samples spanning laboratory inbred strains, recombinant inbred lines, outbred stocks, and wild-caught mice. GigaMUGA is highly informative across a wide range of genetically diverse samples, from laboratory substrains to other Mus species. In addition to describing the content and performance of the array, we provide detailed probe-level annotation and recommendations for quality control.

  19. The Impact of Officials' Localization on the Selection of Land Conveyance Pattern%地方官员本地化对土地出让方式选择的影响研究--以江苏省为例

    Institute of Scientific and Technical Information of China (English)

    毛珣; 陈志刚; 黄贤金

    2016-01-01

    Since local ofifcials have played a dominant role in the selection of land conveyance pattern, studying the effects of their localization features on urban land conveyance has important theoretical and practical meanings. The characteristics of ofifcials’ localization was ifrstly deifned in this paper, followed by a theoretical analysis on its impact. On the basis of a panel data covering detailed information of Jiangsu from 1999 to 2013, we constructed and adopted an econometric model to investigate the impact empirically. As revealed from the result, the features of ofifcials' localization have a signiifcant impact on the selection of land conveyance pattern. Firstly, ofifcials who were born and work locally are more likely to choose negotiation pattern. Secondly, there is an inverted U shape relationship between ofifcials tenure and transfer scale of land by negotiation pattern. Thirdly, ofifcials from primary branches of the same city prefer to transfer land trough bidding and auction pattern. Fourthly, the Party Secretary was found to have stronger inlfuence on the selection of land conveyance pattern than the Mayor. At last, this study proposed some policy suggestions in order to eliminate the effects of ofifcials’ localization on urban land conveyance.%地方官员在土地出让方式的选择上有主导性影响。本文首先界定了官员本地化的内涵特征,并理论分析了官员本地化对土地出让方式选择的影响,然后构建计量经济模型,采用1999-2013年江苏13个地级市的面板数据进行实证检验。结果显示,官员本地化的特征对其选择土地出让方式的偏好影响显著。首先,本市籍贯的官员更倾向于以协议方式供地;其次,官员任期与协议供地规模存在倒U型关系,随着官员任期延长,协议出让规模呈先增后减的变化规律;再次,本市晋升的官员更倾向于以招拍挂方式出让土地;第四,相对于市长而言,市委

  20. Inform@ed space

    DEFF Research Database (Denmark)

    Bjerrum, Peter; Olsen, Kasper Nefer

    2001-01-01

    Inform@ed space Sensorial Perception And Computer Enchancement - bidrag til Nordisk Arkitekturforskningsforenings IT-konference, AAA april 2001.......Inform@ed space Sensorial Perception And Computer Enchancement - bidrag til Nordisk Arkitekturforskningsforenings IT-konference, AAA april 2001....