Quality of core collections for effective utilisation of genetic resources review, discussion and interpretation.

Science.gov (United States)

Odong, T L; Jansen, J; van Eeuwijk, F A; van Hintum, T J L

2013-02-01

Definition of clear criteria for evaluation of the quality of core collections is a prerequisite for selecting high-quality cores. However, a critical examination of the different methods used in literature, for evaluating the quality of core collections, shows that there are no clear guidelines on the choices of quality evaluation criteria and as a result, inappropriate analyses are sometimes made leading to false conclusions being drawn regarding the quality of core collections and the methods to select such core collections. The choice of criteria for evaluating core collections appears to be based mainly on the fact that those criteria have been used in earlier publications rather than on the actual objectives of the core collection. In this study, we provide insight into different criteria used for evaluating core collections. We also discussed different types of core collections and related each type of core collection to their respective evaluation criteria. Two new criteria based on genetic distance are introduced. The consequences of the different evaluation criteria are illustrated using simulated and experimental data. We strongly recommend the use of the distance-based criteria since they not only allow the simultaneous evaluation of all variables describing the accessions, but they also provide intuitive and interpretable criteria, as compared with the univariate criteria generally used for the evaluation of core collections. Our findings will provide genebank curators and researchers with possibilities to make informed choices when creating, comparing and using core collections.

Higher fine-scale genetic structure in peripheral than in core populations of a long-lived and mixed-mating conifer - eastern white cedar (Thuja occidentalis L.)

Science.gov (United States)

2012-01-01

Background Fine-scale or spatial genetic structure (SGS) is one of the key genetic characteristics of plant populations. Several evolutionary and ecological processes and population characteristics influence the level of SGS within plant populations. Higher fine-scale genetic structure may be expected in peripheral than core populations of long-lived forest trees, owing to the differences in the magnitude of operating evolutionary and ecological forces such as gene flow, genetic drift, effective population size and founder effects. We addressed this question using eastern white cedar (Thuja occidentalis) as a model species for declining to endangered long-lived tree species with mixed-mating system. Results We determined the SGS in two core and two peripheral populations of eastern white cedar from its Maritime Canadian eastern range using six nuclear microsatellite DNA markers. Significant SGS ranging from 15 m to 75 m distance classes was observed in the four studied populations. An analysis of combined four populations revealed significant positive SGS up to the 45 m distance class. The mean positive significant SGS observed in the peripheral populations was up to six times (up to 90 m) of that observed in the core populations (15 m). Spatial autocorrelation coefficients and correlograms of single and sub-sets of populations were statistically significant. The extent of within-population SGS was significantly negatively correlated with all genetic diversity parameters. Significant heterogeneity of within-population SGS was observed for 0-15 m and 61-90 m between core and peripheral populations. Average Sp, and gene flow distances were higher in peripheral (Sp = 0.023, σg = 135 m) than in core (Sp = 0.014, σg = 109 m) populations. However, the mean neighborhood size was higher in the core (Nb = 82) than in the peripheral (Nb = 48) populations. Conclusion Eastern white cedar populations have significant fine-scale genetic structure at short distances. Peripheral

Higher fine-scale genetic structure in peripheral than in core populations of a long-lived and mixed-mating conifer - eastern white cedar (Thuja occidentalis L.

Directory of Open Access Journals (Sweden)

Pandey Madhav

2012-04-01

Full Text Available Abstract Background Fine-scale or spatial genetic structure (SGS is one of the key genetic characteristics of plant populations. Several evolutionary and ecological processes and population characteristics influence the level of SGS within plant populations. Higher fine-scale genetic structure may be expected in peripheral than core populations of long-lived forest trees, owing to the differences in the magnitude of operating evolutionary and ecological forces such as gene flow, genetic drift, effective population size and founder effects. We addressed this question using eastern white cedar (Thuja occidentalis as a model species for declining to endangered long-lived tree species with mixed-mating system. Results We determined the SGS in two core and two peripheral populations of eastern white cedar from its Maritime Canadian eastern range using six nuclear microsatellite DNA markers. Significant SGS ranging from 15 m to 75 m distance classes was observed in the four studied populations. An analysis of combined four populations revealed significant positive SGS up to the 45 m distance class. The mean positive significant SGS observed in the peripheral populations was up to six times (up to 90 m of that observed in the core populations (15 m. Spatial autocorrelation coefficients and correlograms of single and sub-sets of populations were statistically significant. The extent of within-population SGS was significantly negatively correlated with all genetic diversity parameters. Significant heterogeneity of within-population SGS was observed for 0-15 m and 61-90 m between core and peripheral populations. Average Sp, and gene flow distances were higher in peripheral (Sp = 0.023, σg = 135 m than in core (Sp = 0.014, σg = 109 m populations. However, the mean neighborhood size was higher in the core (Nb = 82 than in the peripheral (Nb = 48 populations. Conclusion Eastern white cedar populations have significant fine-scale genetic structure at short

Core Hunter 3: flexible core subset selection.

Science.gov (United States)

De Beukelaer, Herman; Davenport, Guy F; Fack, Veerle

2018-05-31

Core collections provide genebank curators and plant breeders a way to reduce size of their collections and populations, while minimizing impact on genetic diversity and allele frequency. Many methods have been proposed to generate core collections, often using distance metrics to quantify the similarity of two accessions, based on genetic marker data or phenotypic traits. Core Hunter is a multi-purpose core subset selection tool that uses local search algorithms to generate subsets relying on one or more metrics, including several distance metrics and allelic richness. In version 3 of Core Hunter (CH3) we have incorporated two new, improved methods for summarizing distances to quantify diversity or representativeness of the core collection. A comparison of CH3 and Core Hunter 2 (CH2) showed that these new metrics can be effectively optimized with less complex algorithms, as compared to those used in CH2. CH3 is more effective at maximizing the improved diversity metric than CH2, still ensures a high average and minimum distance, and is faster for large datasets. Using CH3, a simple stochastic hill-climber is able to find highly diverse core collections, and the more advanced parallel tempering algorithm further increases the quality of the core and further reduces variability across independent samples. We also evaluate the ability of CH3 to simultaneously maximize diversity, and either representativeness or allelic richness, and compare the results with those of the GDOpt and SimEli methods. CH3 can sample equally representative cores as GDOpt, which was specifically designed for this purpose, and is able to construct cores that are simultaneously more diverse, and either are more representative or have higher allelic richness, than those obtained by SimEli. In version 3, Core Hunter has been updated to include two new core subset selection metrics that construct cores for representativeness or diversity, with improved performance. It combines and outperforms the

Construction of Core Collections Suitable for Association Mapping to Optimize Use of Mediterranean Olive (Olea europaea L.) Genetic Resources

Science.gov (United States)

El Bakkali, Ahmed; Haouane, Hicham; Moukhli, Abdelmajid; Costes, Evelyne; Van Damme, Patrick; Khadari, Bouchaib

2013-01-01

Phenotypic characterisation of germplasm collections is a decisive step towards association mapping analyses, but it is particularly expensive and tedious for woody perennial plant species. Characterisation could be more efficient if focused on a reasonably sized subset of accessions, or so-called core collection (CC), reflecting the geographic origin and variability of the germplasm. The questions that arise concern the sample size to use and genetic parameters that should be optimized in a core collection to make it suitable for association mapping. Here we investigated these questions in olive (Olea europaea L.), a perennial fruit species. By testing different sampling methods and sizes in a worldwide olive germplasm bank (OWGB Marrakech, Morocco) containing 502 unique genotypes characterized by nuclear and plastid loci, a two-step sampling method was proposed. The Shannon-Weaver diversity index was found to be the best criterion to be maximized in the first step using the Core Hunter program. A primary core collection of 50 entries (CC50) was defined that captured more than 80% of the diversity. This latter was subsequently used as a kernel with the Mstrat program to capture the remaining diversity. 200 core collections of 94 entries (CC94) were thus built for flexibility in the choice of varieties to be studied. Most entries of both core collections (CC50 and CC94) were revealed to be unrelated due to the low kinship coefficient, whereas a genetic structure spanning the eastern and western/central Mediterranean regions was noted. Linkage disequilibrium was observed in CC94 which was mainly explained by a genetic structure effect as noted for OWGB Marrakech. Since they reflect the geographic origin and diversity of olive germplasm and are of reasonable size, both core collections will be of major interest to develop long-term association studies and thus enhance genomic selection in olive species. PMID:23667437

Genetic education and the challenge of genomic medicine: development of core competences to support preparation of health professionals in Europe

DEFF Research Database (Denmark)

Skirton, Heather; Lewis, Celine; Kent, Alastair

2010-01-01

in professional education and regulation between European countries, setting curricula may not be practical. Core competences are used as a basis for health professional education in many fields and settings. An Expert Group working under the auspices of the EuroGentest project and European Society of Human...... Genetics Education Committee agreed that a pragmatic solution to the need to establish common standards for education and practice in genetic health care was to agree to a set of core competences that could apply across Europe. These were agreed through an exhaustive process of consultation with relevant......The use of genetics and genomics within a wide range of health-care settings requires health professionals to develop expertise to practise appropriately. There is a need for a common minimum standard of competence in genetics for health professionals in Europe but because of differences...

Application of genetic algorithms to in-core nuclear fuel management optimization

International Nuclear Information System (INIS)

Poon, P.W.; Parks, G.T.

1993-01-01

The search for an optimal arrangement of fresh and burnt fuel and control material within the core of a PWR represents a formidable optimization problem. The approach of combining the robust optimization capabilities of the Simulated Annealing (SA) algorithm with the computational speed of a Generalized Perturbation Theory (GPT) based evaluation methodology in the code FORMOSA has proved to be very effective. In this paper, we show that the incorporation of another stochastic search technique, a Genetic Algorithm, results in comparable optimization performance on serial computers and offers substantially superior performance on parallel machines. (orig.)

Genetic Variability of 27 Traits in a Core Collection of Flax (Linum usitatissimum L.).

Science.gov (United States)

You, Frank M; Jia, Gaofeng; Xiao, Jin; Duguid, Scott D; Rashid, Khalid Y; Booker, Helen M; Cloutier, Sylvie

2017-01-01

Assessment of genetic variability of plant core germplasm is needed for efficient germplasm utilization in breeding improvement. A total of 391 accessions of a flax core collection, which preserves the variation present in the world collection of 3,378 accessions maintained by Plant Gene Resources of Canada (PGRC) and represents a broad range of geographical origins, different improvement statuses and two morphotypes, was evaluated in field trials in up to 8 year-location environments for 10 agronomic, eight seed quality, six fiber and three disease resistance traits. The large phenotypic variation in this subset was explained by morphotypes (22%), geographical origins (11%), and other variance components (67%). Both divergence and similarity between two basic morphotypes, namely oil or linseed and fiber types, were observed, whereby linseed accessions had greater thousand seed weight, seeds m -2 , oil content, branching capability and resistance to powdery mildew while fiber accessions had greater straw weight, plant height, protein content and resistance to pasmo and fusarium wilt diseases, but they had similar performance in many traits and some of them shared common characteristics of fiber and linseed types. Weak geographical patterns within either fiber or linseed accessions were confirmed, but specific trait performance was identified in East Asia for fiber type, and South Asia and North America for linseed type. Relatively high broad-sense heritability was obtained for seed quality traits, followed by agronomic traits and resistance to powdery mildew and fusarium wilt. Diverse phenotypic and genetic variability in the flax core collection constitutes a useful resource for breeding.

Genetic Variation of Morphological Traits and Transpiration in an Apple Core Collection under Well-Watered Conditions: Towards the Identification of Morphotypes with High Water Use Efficiency.

Directory of Open Access Journals (Sweden)

Gerardo Lopez

Full Text Available Water use efficiency (WUE is a quantitative measurement which improvement is a major issue in the context of global warming and restrictions in water availability for agriculture. In this study, we aimed at studying the variation and genetic control of WUE and the respective role of its components (plant biomass and transpiration in a perennial fruit crop. We explored an INRA apple core collection grown in a phenotyping platform to screen one-year-old scions for their accumulated biomass, transpiration and WUE under optimal growing conditions. Plant biomass was decompose into morphological components related to either growth or organ expansion. For each trait, nine mixed models were evaluated to account for the genetic effect and spatial heterogeneity inside the platform. The Best Linear Unbiased Predictors of genetic values were estimated after model selection. Mean broad-sense heritabilities were calculated from variance estimates. Heritability values indicated that biomass (0.76 and WUE (0.73 were under genetic control. This genetic control was lower in plant transpiration with an heritability of 0.54. Across the collection, biomass accounted for 70% of the WUE variability. A Hierarchical Ascendant Classification of the core collection indicated the existence of six groups of genotypes with contrasting morphology and WUE. Differences between morphotypes were interpreted as resulting from differences in the main processes responsible for plant growth: cell division leading to the generation of new organs and cell elongation leading to organ dimension. Although further studies will be necessary on mature trees with more complex architecture and multiple sinks such as fruits, this study is a first step for improving apple plant material for the use of water.

Genetic Variation of Morphological Traits and Transpiration in an Apple Core Collection under Well-Watered Conditions: Towards the Identification of Morphotypes with High Water Use Efficiency.

Science.gov (United States)

Lopez, Gerardo; Pallas, Benoît; Martinez, Sébastien; Lauri, Pierre-Éric; Regnard, Jean-Luc; Durel, Charles-Éric; Costes, Evelyne

2015-01-01

Water use efficiency (WUE) is a quantitative measurement which improvement is a major issue in the context of global warming and restrictions in water availability for agriculture. In this study, we aimed at studying the variation and genetic control of WUE and the respective role of its components (plant biomass and transpiration) in a perennial fruit crop. We explored an INRA apple core collection grown in a phenotyping platform to screen one-year-old scions for their accumulated biomass, transpiration and WUE under optimal growing conditions. Plant biomass was decompose into morphological components related to either growth or organ expansion. For each trait, nine mixed models were evaluated to account for the genetic effect and spatial heterogeneity inside the platform. The Best Linear Unbiased Predictors of genetic values were estimated after model selection. Mean broad-sense heritabilities were calculated from variance estimates. Heritability values indicated that biomass (0.76) and WUE (0.73) were under genetic control. This genetic control was lower in plant transpiration with an heritability of 0.54. Across the collection, biomass accounted for 70% of the WUE variability. A Hierarchical Ascendant Classification of the core collection indicated the existence of six groups of genotypes with contrasting morphology and WUE. Differences between morphotypes were interpreted as resulting from differences in the main processes responsible for plant growth: cell division leading to the generation of new organs and cell elongation leading to organ dimension. Although further studies will be necessary on mature trees with more complex architecture and multiple sinks such as fruits, this study is a first step for improving apple plant material for the use of water.

Core map generation for the ITU TRIGA Mark II research reactor using Genetic Algorithm coupled with Monte Carlo method

Energy Technology Data Exchange (ETDEWEB)

Türkmen, Mehmet, E-mail: tm@hacettepe.edu.tr [Nuclear Engineering Department, Hacettepe University, Beytepe Campus, Ankara (Turkey); Çolak, Üner [Energy Institute, Istanbul Technical University, Ayazağa Campus, Maslak, Istanbul (Turkey); Ergün, Şule [Nuclear Engineering Department, Hacettepe University, Beytepe Campus, Ankara (Turkey)

2015-12-15

Highlights: • Optimum core maps were generated for the ITU TRIGA Mark II Research Reactor. • Calculations were performed using a Monte Carlo based reactor physics code, MCNP. • Single-Objective and Multi-Objective Genetic Algorithms were used for the optimization. • k{sub eff} and ppf{sub max} were considered as the optimization objectives. • The generated core maps were compared with the fresh core map. - Abstract: The main purpose of this study is to present the results of Core Map (CM) generation calculations for the İstanbul Technical University TRIGA Mark II Research Reactor by using Genetic Algorithms (GA) coupled with a Monte Carlo (MC) based-particle transport code. Optimization problems under consideration are: (i) maximization of the core excess reactivity (ρ{sub ex}) using Single-Objective GA when the burned fuel elements with no fresh fuel elements are used, (ii) maximization of the ρ{sub ex} and minimization of maximum power peaking factor (ppf{sub max}) using Multi-Objective GA when the burned fuels with fresh fuels are used. The results were obtained when all the control rods are fully withdrawn. ρ{sub ex} and ppf{sub max} values of the produced best CMs were provided. Core-averaged neutron spectrum, and variation of neutron fluxes with respect to radial distance were presented for the best CMs. The results show that it is possible to find an optimum CM with an excess reactivity of 1.17 when the burned fuels are used. In the case of a mix of burned fuels and fresh fuels, the best pattern has an excess reactivity of 1.19 with a maximum peaking factor of 1.4843. In addition, when compared with the fresh CM, the thermal fluxes of the generated CMs decrease by about 2% while change in the fast fluxes is about 1%.Classification: J. Core physics.

Molecular genetic diversity in a core of cocoa ( Theobroma cacao L ...

African Journals Online (AJOL)

This study aimed to assess the genetic variability in groups of 11 clones of Theobroma cacao L., from different geographical regions, based on microsatellite markers, with the interest to characterize germplasm for breeding. The products of the amplification of these materials with 15 simple sequence repeat (SSR) markers ...

The fuzzy clearing approach for a niching genetic algorithm applied to a nuclear reactor core design optimization problem

International Nuclear Information System (INIS)

Sacco, Wagner F.; Machado, Marcelo D.; Pereira, Claudio M.N.A.; Schirru, Roberto

2004-01-01

This article extends previous efforts on genetic algorithms (GAs) applied to a core design optimization problem. We introduce the application of a new Niching Genetic Algorithm (NGA) to this problem and compare its performance to these previous works. The optimization problem consists in adjusting several reactor cell parameters, such as dimensions, enrichment and materials, in order to minimize the average peak-factor in a three-enrichment zone reactor, considering restrictions on the average thermal flux, criticality and sub-moderation. After exhaustive experiments we observed that our new niching method performs better than the conventional GA due to a greater exploration of the search space

Genetic education and the challenge of genomic medicine: development of core competences to support preparation of health professionals in Europe

DEFF Research Database (Denmark)

Skirton, Heather; Lewis, Celine; Kent, Alastair

2010-01-01

in professional education and regulation between European countries, setting curricula may not be practical. Core competences are used as a basis for health professional education in many fields and settings. An Expert Group working under the auspices of the EuroGentest project and European Society of Human...... and professions has resulted in an adaptable framework for both pre-registration and continuing professional education. This competence framework has the potential to improve the quality of genetic health care for patients globally.......The use of genetics and genomics within a wide range of health-care settings requires health professionals to develop expertise to practise appropriately. There is a need for a common minimum standard of competence in genetics for health professionals in Europe but because of differences...

Exploring the Dynamic Relationship between the Accelerative Integrated Method (AIM) and the Core French Teachers Who Use It: Why Agency and Experience Matter

Science.gov (United States)

Arnott, Stephanie

2011-01-01

Over the last decade, almost 4,000 Canadian schools have moved to using the Accelerative Integrated Method (AIM) for core French (CF) instruction. Following researchers' recommendations (Brumfit, 1984; Lapkin, Mady, & Arnott, 2009; Larsen-Freeman, 1996, 2000; Prahbu, 1990), I am shifting the focus in this case study from product to process. In…

Emerging Genetic Counselor Roles within the Biotechnology and Pharmaceutical Industries: as Industry Interest Grows in Rare Genetic Disorders, How are Genetic Counselors Joining the Discussion?

Science.gov (United States)

Field, Tessa; Brewster, Stephanie Jo; Towne, Meghan; Campion, MaryAnn W

2016-08-01

Traditionally, the biotechnology and pharmaceutical industry (BPI) has focused drug development at the mass-market level targeting common medical issues. However, a recent trend is the development of therapies for orphan or rare disorders, including many genetic disorders. Developing treatments for genetic disorders requires an understanding of the needs of the community and translating genomic information to clinical and non-clinical audiences. The core skills of genetic counselors (GCs) include a deep knowledge of genetics and ability to communicate complex information to a broad audience, making GCs a choice fit for this shift in drug development. To date there is limited data defining the roles GCs hold within this industry. This exploratory study aimed to define the roles and motivation of GCs working in BPI, assess job satisfaction, and identify translatable skills and current gaps in GC training programs. The authors surveyed 26 GCs working in BPI in the United States; 79 % work for companies focused on rare disorders. GC positions in BPI are growing, with 57 % of respondents being the first GC in their role. GCs in BPI continue to utilize core genetic counseling competencies, though 72 % felt their training did not fully prepare them for BPI. These data suggest opportunities for exposure to BPI in GC training to better prepare future generations of GCs for these career opportunities. GC satisfaction was high in BPI, notably in areas traditionally reported as less satisfying on the National Society for Genetic Counselors Professional Status Survey: salary and advancement opportunities. BPI's growing interest in rare disorders represents a career opportunity for GCs, addressing both historic areas of dissatisfaction for GCs and BPI's genomic communication needs.

Structural, evolutionary and genetic analysis of the histidine biosynthetic "core" in the genus Burkholderia.

Science.gov (United States)

Papaleo, Maria Cristiana; Russo, Edda; Fondi, Marco; Emiliani, Giovanni; Frandi, Antonio; Brilli, Matteo; Pastorelli, Roberta; Fani, Renato

2009-12-01

In this work a detailed analysis of the structure, the expression and the organization of his genes belonging to the core of histidine biosynthesis (hisBHAF) in 40 newly determined and 13 available sequences of Burkholderia strains was carried out. Data obtained revealed a strong conservation of the structure and organization of these genes through the entire genus. The phylogenetic analysis showed the monophyletic origin of this gene cluster and indicated that it did not undergo horizontal gene transfer events. The analysis of the intergenic regions, based on the substitution rate, entropy plot and bendability suggested the existence of a putative transcription promoter upstream of hisB, that was supported by the genetic analysis that showed that this cluster was able to complement Escherichia colihisA, hisB, and hisF mutations. Moreover, a preliminary transcriptional analysis and the analysis of microarray data revealed that the expression of the his core was constitutive. These findings are in agreement with the fact that the entire Burkholderiahis operon is heterogeneous, in that it contains "alien" genes apparently not involved in histidine biosynthesis. Besides, they also support the idea that the proteobacterial his operon was piece-wisely assembled, i.e. through accretion of smaller units containing only some of the genes (eventually together with their own promoters) involved in this biosynthetic route. The correlation existing between the structure, organization and regulation of his "core" genes and the function(s) they perform in cellular metabolism is discussed.

Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora.

Science.gov (United States)

Leroy, Thierry; De Bellis, Fabien; Legnate, Hyacinthe; Musoli, Pascal; Kalonji, Adrien; Loor Solórzano, Rey Gastón; Cubry, Philippe

2014-06-01

The management of diversity for conservation and breeding is of great importance for all plant species and is particularly true in perennial species, such as the coffee Coffea canephora. This species exhibits a large genetic and phenotypic diversity with six different diversity groups. Large field collections are available in the Ivory Coast, Uganda and other Asian, American and African countries but are very expensive and time consuming to establish and maintain in large areas. We propose to improve coffee germplasm management through the construction of genetic core collections derived from a set of 565 accessions that are characterized with 13 microsatellite markers. Core collections of 12, 24 and 48 accessions were defined using two methods aimed to maximize the allelic diversity (Maximization strategy) or genetic distance (Maximum-Length Sub-Tree method). A composite core collection of 77 accessions is proposed for both objectives of an optimal management of diversity and breeding. This core collection presents a gene diversity value of 0.8 and exhibits the totality of the major alleles (i.e., 184) that are present in the initial set. The seven proposed core collections constitute a valuable tool for diversity management and a foundation for breeding programs. The use of these collections for collection management in research centers and breeding perspectives for coffee improvement are discussed.

Enhancing the Internationalisation of Distance Education in the Biological Sciences: The DUNE Project and Genetic Engineering.

Science.gov (United States)

Leach, C. K.; And Others

1997-01-01

Describes the Distance Educational Network of Europe (DUNE) project that aims at enhancing the development of distance education in an international context. Highlights issues relating to the delivery of distance-learning courses in a transnational forum. Describes the genetic engineering course that aims at explaining the core techniques of…

Exploring the dynamic relationship between the Accelerative Integrated Method (AIM and the core French teachers who use it: Why agency and experience matter.

Directory of Open Access Journals (Sweden)

Stephanie Arnott

2011-12-01

Full Text Available Abstract Over the last decade, almost 4,000 Canadian schools have moved to using the Accelerative Integrated Method (AIM for core French (CF instruction. Following researchers’ recommendations (Brumfit, 1984; Lapkin, Mady, & Arnott, 2009; Larsen-Freeman, 1996, 2000; Prahbu, 1990, I am shifting the focus in this case study from product to process. In other words, investigating how AIM teachers use and shape the method during implementation instead of comparing AIM and non-AIM student outcomes (Bourdages & Vignola, 2009; Carr, 2001; Mady, Arnott, & Lapkin, 2009; Maxwell, 2001; Michels, 2008;. Four interviews and observation sessions were conducted with eight elementary-level CF teachers. Findings showed that while some AIM routines and strategies were used by all, teachers exercised their agency in supplementing recommended AIM activities and materials, especially those with more AIM and CF teaching experience. Establishing that using AIM engaged teachers’ senses of plausibility (Prahbu, 1990 also exposed important implications for future AIM research and board-level policy. Résumé Depuis les années 2000, plus de 4000 écoles canadiennes ont decidé d’utiliser une forme d’enseignement qui s’appelle AIM (Accelerative Integrated Method pour leurs programmes de français de base (Core French. Selon les recommandations des chercheurs suivants (Brumfit, 1984; Lapkin, Mady, & Arnott, 2009; Larsen-Freeman, 1996, 2000; Prahbu, 1990, au lieu d’étudier les résultats, l’objectif de cette étude de cas était d’examiner la mise en œuvre de AIM. Huit enseignants de français de base ont passé quatre entrevues individuelles. Ils ont eu quatre sessions d’observation de pratique de AIM . Selon les résultats, quoiqu’ils aient employé des stratégies et routines de AIM de la même façon, tous les enseignants ont aussi décidé d’ajouter leurs propres activités et ressources à AIM, surtout ceux experts dans l’enseignement du fran

MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis.

Science.gov (United States)

Kumar, Sudhir; Stecher, Glen; Peterson, Daniel; Tamura, Koichiro

2012-10-15

There is a growing need in the research community to apply the molecular evolutionary genetics analysis (MEGA) software tool for batch processing a large number of datasets and to integrate it into analysis workflows. Therefore, we now make available the computing core of the MEGA software as a stand-alone executable (MEGA-CC), along with an analysis prototyper (MEGA-Proto). MEGA-CC provides users with access to all the computational analyses available through MEGA's graphical user interface version. This includes methods for multiple sequence alignment, substitution model selection, evolutionary distance estimation, phylogeny inference, substitution rate and pattern estimation, tests of natural selection and ancestral sequence inference. Additionally, we have upgraded the source code for phylogenetic analysis using the maximum likelihood methods for parallel execution on multiple processors and cores. Here, we describe MEGA-CC and outline the steps for using MEGA-CC in tandem with MEGA-Proto for iterative and automated data analysis. http://www.megasoftware.net/.

Genetic algorithms used for PWRs refuel management automatic optimization: a new modelling

International Nuclear Information System (INIS)

Chapot, Jorge Luiz C.; Schirru, Roberto; Silva, Fernando Carvalho da

1996-01-01

A Genetic Algorithms-based system, linking the computer codes GENESIS 5.0 and ANC through the interface ALGER, has been developed aiming the PWRs fuel management optimization. An innovative codification, the Lists Model, has been incorporated to the genetic system, which avoids the use of variants of the standard crossover operator and generates only valid loading patterns in the core. The GENESIS/ALGER/ANC system has been successfully tested in an optimization study for Angra-1 second cycle. (author)

Core neuropathological abnormalities in progranulin-deficient mice are penetrant on multiple genetic backgrounds.

Science.gov (United States)

Petkau, T L; Hill, A; Leavitt, B R

2016-02-19

Loss-of-function mutations in the progranulin gene (GRN) are a common cause of familial frontotemporal lobar degeneration (FTLD). A high degree of heterogeneity in the age-of-onset, duration of disease, and clinical presentation of FTLD, even among families carrying the same GRN mutation, suggests that additional modifying genes may be important to pathogenesis. Progranulin-knockout mice display subtle behavioral abnormalities and progressive neuropathological changes, as well as altered dendritic morphology and synaptic deficits in the hippocampus. In this study we evaluated multiple neuropathological endpoints in aged progranulin knockout mice and their wild-type littermates on two different genetic backgrounds: C57Bl/6 and 129/SvImJ. We find that in most brain regions, both strains are susceptible to progranulin-mediated neuropathological phenotypes, including astrogliosis, microgliosis, and highly accelerated deposition of the aging pigment lipofuscin. Neuroinflammation due to progranulin deficiency is exaggerated in the B6 strain and present, but less pronounced, in the 129 strain. Differences between the strains in hippocampal neuron counts and neuronal morphology suggest a complex role for progranulin in the hippocampus. We conclude that core progranulin-mediated neurodegenerative phenotypes are penetrant on multiple inbred mouse strains, but that genetic background modulates progranulin's role in neuroinflammation and hippocampal biology. Copyright © 2015 IBRO. Published by Elsevier Ltd. All rights reserved.

Genetic characterization of a core collection of flax (Linum usitatissimum L.) suitable for association mapping studies and evidence of divergent selection between fiber and linseed types.

Science.gov (United States)

Soto-Cerda, Braulio J; Diederichsen, Axel; Ragupathy, Raja; Cloutier, Sylvie

2013-05-06

Flax is valued for its fiber, seed oil and nutraceuticals. Recently, the fiber industry has invested in the development of products made from linseed stems, making it a dual purpose crop. Simultaneous targeting of genomic regions controlling stem fiber and seed quality traits could enable the development of dual purpose cultivars. However, the genetic diversity, population structure and linkage disequilibrium (LD) patterns necessary for association mapping (AM) have not yet been assessed in flax because genomic resources have only recently been developed. We characterized 407 globally distributed flax accessions using 448 microsatellite markers. The data was analyzed to assess the suitability of this core collection for AM. Genomic scans to identify candidate genes selected during the divergent breeding process of fiber flax and linseed were conducted using the whole genome shotgun sequence of flax. Combined genetic structure analysis assigned all accessions to two major groups with six sub-groups. Population differentiation was weak between the major groups (F(ST) = 0.094) and for most of the pairwise comparisons among sub-groups. The molecular coancestry analysis indicated weak relatedness (mean = 0.287) for most individual pairs. Abundant genetic diversity was observed in the total panel (5.32 alleles per locus), and some sub-groups showed a high proportion of private alleles. The average genome-wide LD (r²) was 0.036, with a relatively fast decay of 1.5 cM. Genomic scans between fiber flax and linseed identified candidate genes involved in cell-wall biogenesis/modification, xylem identity and fatty acid biosynthesis congruent with genes previously identified in flax and other plant species. Based on the abundant genetic diversity, weak population structure and relatedness and relatively fast LD decay, we concluded that this core collection is suitable for AM studies targeting multiple agronomic and quality traits aiming at the improvement of flax as a

How cores grow by pebble accretion. I. Direct core growth

Science.gov (United States)

Brouwers, M. G.; Vazan, A.; Ormel, C. W.

2018-03-01

Context. Planet formation by pebble accretion is an alternative to planetesimal-driven core accretion. In this scenario, planets grow by the accretion of cm- to m-sized pebbles instead of km-sized planetesimals. One of the main differences with planetesimal-driven core accretion is the increased thermal ablation experienced by pebbles. This can provide early enrichment to the planet's envelope, which influences its subsequent evolution and changes the process of core growth. Aims: We aim to predict core masses and envelope compositions of planets that form by pebble accretion and compare mass deposition of pebbles to planetesimals. Specifically, we calculate the core mass where pebbles completely evaporate and are absorbed before reaching the core, which signifies the end of direct core growth. Methods: We model the early growth of a protoplanet by calculating the structure of its envelope, taking into account the fate of impacting pebbles or planetesimals. The region where high-Z material can exist in vapor form is determined by the temperature-dependent vapor pressure. We include enrichment effects by locally modifying the mean molecular weight of the envelope. Results: In the pebble case, three phases of core growth can be identified. In the first phase (Mcore mixes outwards, slowing core growth. In the third phase (Mcore > 0.5M⊕), the high-Z inner region expands outwards, absorbing an increasing fraction of the ablated material as vapor. Rainout ends before the core mass reaches 0.6 M⊕, terminating direct core growth. In the case of icy H2O pebbles, this happens before 0.1 M⊕. Conclusions: Our results indicate that pebble accretion can directly form rocky cores up to only 0.6 M⊕, and is unable to form similarly sized icy cores. Subsequent core growth can proceed indirectly when the planet cools, provided it is able to retain its high-Z material.

Holistic Nursing in the Genetic/Genomic Era.

Science.gov (United States)

Sharoff, Leighsa

2016-06-01

Holistic nursing practice is an ever-evolving transformative process with core values that require continued growth, professional leadership, and advocacy. Holistic nurses are required to stay current with all new required competencies, such as the Core Competencies in Genetics for Health Professional, and, as such, be adept at translating scientific evidence relating to genetics/genomics in the clinical setting. Knowledge of genetics/genomics in relation to nursing practice, policy, utilization, and research influence nurses' responsibilities. In addition to holistic nursing competencies, the holistic nurse must have basic knowledge and skills to integrate genetics/genomics aspects. It is important for holistic nurses to enhance their overall knowledge foundation, skills, and attitudes about genetics to prepare for the transformation in health care that is already underway. Holistic nurses can provide an important perspective to the application of genetics and genomics, focusing on health promotion, caring, and understanding the relationship between caring and families, community, and society. Yet there may be a lack of genetic and genomic knowledge to fully participate in the current genomic era. This article will explore the required core competencies for all health care professionals, share linkage of holistic nurses in practice with genetic/genomic conditions, and provide resources to further one's knowledge base. © The Author(s) 2015.

Use of non-invasive genetics to generate core-area population estimates of a threatened predator in the Superior National Forest, USA

Science.gov (United States)

Barber-Meyer, Shannon; Ryan, Daniel; Grosshuesch, David; Catton, Timothy; Malick-Wahls, Sarah

2018-01-01

Canada lynx (Lynx canadensis) are found in boreal forests of Canada and Alaska and range southward into the contiguous United States. Much less is understood about lynx in their southern range compared to northern populations. Because lynx are currently listed as threatened under the US Endangered Species Act but have recently been recommended for delisting, information on their southern populations is important for lynx recovery, conservation, and management. We used non-invasive, genetic data collected during lynx snowtracking surveys from 2012-2017 to generate core-area estimates of abundance, trend and density in selected core areas of the Superior National Forest of Minnesota, USA. Lynx abundance estimates averaged 41.8 (SD=14.7, range=24-67) during 2012-2017 in the smaller

Genetically elevated non-fasting triglycerides and calculated remnant cholesterol as causal risk factors for myocardial infarction

DEFF Research Database (Denmark)

Jørgensen, Anders Berg; Frikke-Schmidt, Ruth; West, Anders Sode

2012-01-01

AimsElevated non-fasting triglycerides mark elevated levels of remnant cholesterol. Using a Mendelian randomization approach, we tested whether genetically increased remnant cholesterol in hypertriglyceridaemia due to genetic variation in the apolipoprotein A5 gene (APOA5) associates with an incr......AimsElevated non-fasting triglycerides mark elevated levels of remnant cholesterol. Using a Mendelian randomization approach, we tested whether genetically increased remnant cholesterol in hypertriglyceridaemia due to genetic variation in the apolipoprotein A5 gene (APOA5) associates...... with an increased risk of myocardial infarction (MI).Methods and resultsWe resequenced the core promoter and coding regions of APOA5 in individuals with the lowest 1% (n = 95) and highest 2% (n = 190) triglyceride levels in the Copenhagen City Heart Study (CCHS, n = 10 391). Genetic variants which differed...... in frequency between the two extreme triglyceride groups (c.-1131T > C, S19W, and c.*31C > T; P-value: 0.06 to...

Mining microsatellites in the peach genome: development of new long-core SSR markers for genetic analyses in five Prunus species.

Science.gov (United States)

Dettori, Maria Teresa; Micali, Sabrina; Giovinazzi, Jessica; Scalabrin, Simone; Verde, Ignazio; Cipriani, Guido

2015-01-01

A wide inventory of molecular markers is nowadays available for individual fingerprinting. Microsatellites, or simple sequence repeats (SSRs), play a relevant role due to their relatively ease of use, their abundance in the plant genomes, and their co-dominant nature, together with the availability of primer sequences in many important agricultural crops. Microsatellites with long-core motifs are more easily scored and were adopted long ago in human genetics but they were developed only in few crops, and Prunus species are not among them. In the present work the peach whole-genome sequence was used to select 216 SSRs containing long-core motifs with tri-, tetra- and penta-nucleotide repeats. Microsatellite primer pairs were designed and tested for polymorphism in the five diploid Prunus species of economic relevance (almond, apricot, Japanese plum, peach and sweet cherry). A set of 26 microsatellite markers covering all the eight chromosomes, was also selected and used in the molecular characterization, population genetics and structure analyses of a representative sample of the five diploid Prunus species, assessing their transportability and effectiveness. The combined probability of identity between two random individuals for the whole set of 26 SSRs was quite low, ranging from 2.30 × 10(-7) in peach to 9.48 × 10(-10) in almond, confirming the usefulness of the proposed set for fingerprinting analyses in Prunus species.

Core trénink ve florbale

OpenAIRE

Mašková, Alžběta

2014-01-01

Title: Use of core training in floorball Objectives: Present an overview of research papers regarding core training and its possible use in floorball Tasks: First aim of this thesis is to provide description and explanation of the core training by using available literature, research papers, bachelor or magister thesis and also thesis of the coaching school. Second aim is to analyze the necessary components of floorball player's performance relative to the core training. This is followed by a...

Phylogenetic Diversity in Core Region of Hepatitis C Virus Genotype 1a as a Factor Associated with Fibrosis Severity in HIV-1-Coinfected Patients

Directory of Open Access Journals (Sweden)

Micaela Parra

2017-01-01

Full Text Available High hepatitis C virus (HCV genetic diversity impacts infectivity/pathogenicity, influencing chronic liver disease progression associated with fibrosis degrees and hepatocellular carcinoma. HCV core protein is crucial in cell-growth regulation and host-gene expression. Liver fibrosis is accelerated by unknown mechanisms in human immunodeficiency virus-1- (HIV-1- coinfected individuals. We aimed to study whether well-defined HCV-1a core polymorphisms and genetic heterogeneity are related to fibrosis in a highly homogeneous group of interferon-treated HIV-HCV-coinfected patients. Genetic heterogeneity was weighed by Faith’s phylogenetic diversity (PD, which has been little studied in HCV. Eighteen HCV/HIV-coinfected patients presenting different liver fibrosis stages before anti-HCV treatment-initiation were recruited. Sampling at baseline and during and after treatment was performed up to 72 weeks. At inter/intrahost level, HCV-1a populations were studied using molecular cloning and Sanger sequencing. Over 400 complete HCV-1a core sequences encompassing 573 positions of C were obtained. Amino acid substitutions found previously at positions 70 and 91 of HCV-1b core region were not observed. However, HCV genetic heterogeneity was higher in mild than in severe fibrosis cases. These results suggest a potential utility of PD as a virus-related factor associated with chronic hepatitis C progression. These observations should be reassessed in larger cohorts to corroborate our findings and assess other potential covariates.

Analysis of genetic diversity and construction of core collection of ...

African Journals Online (AJOL)

Jane

2011-06-03

Jun 3, 2011 ... Genetic diversity of 73 local mulberry varieties from Shanxi Province were screened using ISSR ... number effective of alleles, Nei's genetic diversity index and Shannon's ...... resources conservation program of the Agriculture.

[Core muscle chains activation during core exercises determined by EMG-a systematic review].

Science.gov (United States)

Rogan, Slavko; Riesen, Jan; Taeymans, Jan

2014-10-15

Good core muscles strength is essential for daily life and sports activities. However, the mechanism how core muscles may be effectively triggered by exercises is not yet precisely described in the literature. The aim of this systematic review was to evaluate the rate of activation as measured by electromyography of the ventral, lateral and dorsal core muscle chains during core (trunk) muscle exercises. A total of 16 studies were included. Exercises with a vertical starting position, such as the deadlift or squat activated significantly more core muscles than exercises in the horizontal initial position.

Genetic Analysis Aimed at the Identification of Appropriated Children: Political and Scientific Construction of “Nature” and Kinship

Directory of Open Access Journals (Sweden)

Sabina Amantze Regueiro

2010-01-01

Full Text Available This article deals with the genetic analysis aimed at the identification of children appropriated during the last Argentine military dictatorship. For this purpose, the discussions on the nature-culture dichotomy are considered, with an approach to kinship as a political construction from the searching action of Abuelas de Plaza de Mayo (Grandmothers, promoting scientific techniques for the “discovery” of the biological bond. In this sense, the forms of legal construction of families connected to the identification; the subsequent constitution of family relationships, as well as certain social effects that transcend them are also studied. In this way, it will be argued that even in cases in which kinship seems to come to an end in the blood bond, the biological aspect does not exist beyond the social and symbolic practices.

Analysis of hepatitis C virus core/NS5A protein co-localization using novel cell culture systems expressing core-NS2 and NS5A of genotypes 1-7

DEFF Research Database (Denmark)

Galli, Andrea; Scheel, Troels K H; Prentoe, Jannick C

2013-01-01

Hepatitis C virus (HCV) is an important human pathogen infecting hepatocytes. With the advent of infectious cell culture systems, the HCV particle assembly and release processes are finally being uncovered. The HCV core and NS5A proteins co-localize on cytoplasmic lipid droplets (c......LDs) or on the endoplasmic reticulum (ER) at different stages of particle assembly. Current knowledge on assembly and release is primarily based on studies in genotype 2a cell culture systems; however, given the high genetic heterogeneity of HCV, variations might exist among genotypes. Here, we developed novel HCV strain...... JFH1-based recombinants expressing core-NS2 and NS5A from genotypes 1-7, and analysed core and NS5A co-localization in infected cells. Huh7.5 cells were transfected with RNA of core-NS2/NS5A recombinants and putative adaptive mutations were analysed by reverse genetics. Adapted core-NS2/NS5A...

Assessing the Genetics Content in the Next Generation Science Standards.

Science.gov (United States)

Lontok, Katherine S; Zhang, Hubert; Dougherty, Michael J

2015-01-01

Science standards have a long history in the United States and currently form the backbone of efforts to improve primary and secondary education in science, technology, engineering, and math (STEM). Although there has been much political controversy over the influence of standards on teacher autonomy and student performance, little light has been shed on how well standards cover science content. We assessed the coverage of genetics content in the Next Generation Science Standards (NGSS) using a consensus list of American Society of Human Genetics (ASHG) core concepts. We also compared the NGSS against state science standards. Our goals were to assess the potential of the new standards to support genetic literacy and to determine if they improve the coverage of genetics concepts relative to state standards. We found that expert reviewers cannot identify ASHG core concepts within the new standards with high reliability, suggesting that the scope of content addressed by the standards may be inconsistently interpreted. Given results that indicate that the disciplinary core ideas (DCIs) included in the NGSS documents produced by Achieve, Inc. clarify the content covered by the standards statements themselves, we recommend that the NGSS standards statements always be viewed alongside their supporting disciplinary core ideas. In addition, gaps exist in the coverage of essential genetics concepts, most worryingly concepts dealing with patterns of inheritance, both Mendelian and complex. Finally, state standards vary widely in their coverage of genetics concepts when compared with the NGSS. On average, however, the NGSS support genetic literacy better than extant state standards.

Assessing the Genetics Content in the Next Generation Science Standards.

Directory of Open Access Journals (Sweden)

Katherine S Lontok

Full Text Available Science standards have a long history in the United States and currently form the backbone of efforts to improve primary and secondary education in science, technology, engineering, and math (STEM. Although there has been much political controversy over the influence of standards on teacher autonomy and student performance, little light has been shed on how well standards cover science content. We assessed the coverage of genetics content in the Next Generation Science Standards (NGSS using a consensus list of American Society of Human Genetics (ASHG core concepts. We also compared the NGSS against state science standards. Our goals were to assess the potential of the new standards to support genetic literacy and to determine if they improve the coverage of genetics concepts relative to state standards. We found that expert reviewers cannot identify ASHG core concepts within the new standards with high reliability, suggesting that the scope of content addressed by the standards may be inconsistently interpreted. Given results that indicate that the disciplinary core ideas (DCIs included in the NGSS documents produced by Achieve, Inc. clarify the content covered by the standards statements themselves, we recommend that the NGSS standards statements always be viewed alongside their supporting disciplinary core ideas. In addition, gaps exist in the coverage of essential genetics concepts, most worryingly concepts dealing with patterns of inheritance, both Mendelian and complex. Finally, state standards vary widely in their coverage of genetics concepts when compared with the NGSS. On average, however, the NGSS support genetic literacy better than extant state standards.

Genetics Home Reference: core binding factor acute myeloid leukemia

Science.gov (United States)

... binding factor acute myeloid leukemia Core binding factor acute myeloid leukemia Printable PDF Open All Close All Enable Javascript ... on PubMed (1 link) PubMed OMIM (1 link) LEUKEMIA, ACUTE MYELOID Sources for This Page Goyama S, Mulloy JC. Molecular ...

Application of Computational Intelligence Methods to In-Core Fuel Management

International Nuclear Information System (INIS)

Erdogan, A.

2001-01-01

k e ff higher than reference values were stored as candidate optimum patterns. At the last stage of the work, an alternative loading pattern generator based on genetic algorithm method was developed. In this method, an initial loading pattern is improved by applying the genetic operators to obtain the optimum. The loading patterns obtained from the rule-based and the genetic algorithm methods were compared, and the genetic algorithm was shown to be more successful than the former. It was seen that, it is possible to automate in-core fuel management activities by applying artificial intelligence techniques

Genetic and Environmental Sources of Implicit and Explicit Self-Esteem and Affect: Results from a Genetically Sensitive Multi-group Design.

Science.gov (United States)

Stieger, Stefan; Kandler, Christian; Tran, Ulrich S; Pietschnig, Jakob; Voracek, Martin

2017-03-01

In today's world, researchers frequently utilize indirect measures of implicit (i.e., automatic, spontaneous) evaluations. The results of several studies have supported the usefulness of these measures in predicting behavior, as compared to utilizing direct measures of explicit (i.e., purposeful, deliberate) evaluations. A current, under-debate issue concerns the origin of these implicit evaluations. The present genetically sensitive multi-group study analyzed data from 223 twin pairs and 222 biological core families to estimate possible genetic and environmental sources of individual differences in implicit and explicit self-esteem and affect. The results show that implicit self-esteem and affect maintain a substantial genetic basis, but demonstrate little influence from the shared environment by siblings (e.g., shared familial socialization in childhood). A bivariate analysis found that implicit and explicit evaluations of the same construct share a common genetic core which aligns with the motivation and opportunity as determinants (MODE) model.

Methods of developing core collections based on the predicted genotypic value of rice ( Oryza sativa L.).

Science.gov (United States)

Li, C T; Shi, C H; Wu, J G; Xu, H M; Zhang, H Z; Ren, Y L

2004-04-01

The selection of an appropriate sampling strategy and a clustering method is important in the construction of core collections based on predicted genotypic values in order to retain the greatest degree of genetic diversity of the initial collection. In this study, methods of developing rice core collections were evaluated based on the predicted genotypic values for 992 rice varieties with 13 quantitative traits. The genotypic values of the traits were predicted by the adjusted unbiased prediction (AUP) method. Based on the predicted genotypic values, Mahalanobis distances were calculated and employed to measure the genetic similarities among the rice varieties. Six hierarchical clustering methods, including the single linkage, median linkage, centroid, unweighted pair-group average, weighted pair-group average and flexible-beta methods, were combined with random, preferred and deviation sampling to develop 18 core collections of rice germplasm. The results show that the deviation sampling strategy in combination with the unweighted pair-group average method of hierarchical clustering retains the greatest degree of genetic diversities of the initial collection. The core collections sampled using predicted genotypic values had more genetic diversity than those based on phenotypic values.

Journal of Genetics | Indian Academy of Sciences

Indian Academy of Sciences (India)

Genetic structure of the rattan Calamus thwaitesii in core, buffer and peripheral regions of three protected areas in centralWestern Ghats, India: do protected areas serve as refugia for genetic resources of economically important plants? B. T. Ramesha G. Ravikanth M. Nageswara Rao K. N. Ganeshaiah R. Uma Shaanker.

The Darwin Core extension for genebanks opens up new opportunities for sharing genebank datasets

Directory of Open Access Journals (Sweden)

Dag Terje Filip Endresen

2012-07-01

Full Text Available Darwin Core (DwC defines a standard set of terms to describe the primary biodiversity data. Primary biodiversity data are data records derived from direct observation of species occurrences in nature or describing specimens in biological collections. The Darwin Core terms can be seen as an extension to the standard Dublin Core metadata terms. The new Darwin Core extension for genebanks declares the additional terms required for describing genebank datasets, and is based on established standards from the plant genetic resources community. The Global Biodiversity Information Facility (GBIF provides an information infrastructure for biodiversity data including a suite of software tools for data publishing, distributed data access, and the capture of biodiversity data. The Darwin Core extension for genebanks is a key component that provides access for the genebanks and the plant genetic resources community to the GBIF informatics infrastructure including the new toolkits for data exchange. This paper provides one of the first examples and guidelines for how to create extensions to the Darwin Core standard.

Genetic diversity analysis of common beans based on molecular markers

Directory of Open Access Journals (Sweden)

Homar R. Gill-Langarica

2011-01-01

Full Text Available A core collection of the common bean (Phaseolus vulgaris L., representing genetic diversity in the entire Mexican holding, is kept at the INIFAP (Instituto Nacional de Investigaciones Forestales, Agricolas y Pecuarias, Mexico Germplasm Bank. After evaluation, the genetic structure of this collection (200 accessions was compared with that of landraces from the states of Oaxaca, Chiapas and Veracruz (10 genotypes from each, as well as a further 10 cultivars, by means of four amplified fragment length polymorphisms (AFLP +3/+3 primer combinations and seven simple sequence repeats (SSR loci, in order to define genetic diversity, variability and mutual relationships. Data underwent cluster (UPGMA and molecular variance (AMOVA analyses. AFLP analysis produced 530 bands (88.5% polymorphic while SSR primers amplified 174 alleles, all polymorphic (8.2 alleles per locus. AFLP indicated that the highest genetic diversity was to be found in ten commercial-seed classes from two major groups of accessions from Central Mexico and Chiapas, which seems to be an important center of diversity in the south. A third group included genotypes from Nueva Granada, Mesoamerica, Jalisco and Durango races. Here, SSR analysis indicated a reduced number of shared haplotypes among accessions, whereas the highest genetic components of AMOVA variation were found within accessions. Genetic diversity observed in the common-bean core collection represents an important sample of the total Phaseolus genetic variability at the main Germplasm Bank of INIFAP. Molecular marker strategies could contribute to a better understanding of the genetic structure of the core collection as well as to its improvement and validation.

Genetic diversity analysis of common beans based on molecular markers

Directory of Open Access Journals (Sweden)

Homar R. Gill-Langarica

Full Text Available A core collection of the common bean (Phaseolus vulgaris L., representing genetic diversity in the entire Mexican holding, is kept at the INIFAP (Instituto Nacional de Investigaciones Forestales, Agricolas y Pecuarias, Mexico Germplasm Bank. After evaluation, the genetic structure of this collection (200 accessions was compared with that of landraces from the states of Oaxaca, Chiapas and Veracruz (10 genotypes from each, as well as a further 10 cultivars, by means of four amplified fragment length polymorphisms (AFLP +3/+3 primer combinations and seven simple sequence repeats (SSR loci, in order to define genetic diversity, variability and mutual relationships. Data underwent cluster (UPGMA and molecular variance (AMOVA analyses. AFLP analysis produced 530 bands (88.5% polymorphic while SSR primers amplified 174 alleles, all polymorphic (8.2 alleles per locus. AFLP indicated that the highest genetic diversity was to be found in ten commercial-seed classes from two major groups of accessions from Central Mexico and Chiapas, which seems to be an important center of diversity in the south. A third group included genotypes from Nueva Granada, Mesoamerica, Jalisco and Durango races. Here, SSR analysis indicated a reduced number of shared haplotypes among accessions, whereas the highest genetic components of AMOVA variation were found within accessions. Genetic diversity observed in the common-bean core collection represents an important sample of the total Phaseolus genetic variability at the main Germplasm Bank of INIFAP. Molecular marker strategies could contribute to a better understanding of the genetic structure of the core collection as well as to its improvement and validation.

Genetic diversity analysis of common beans based on molecular markers.

Science.gov (United States)

Gill-Langarica, Homar R; Muruaga-Martínez, José S; Vargas-Vázquez, M L Patricia; Rosales-Serna, Rigoberto; Mayek-Pérez, Netzahualcoyotl

2011-10-01

A core collection of the common bean (Phaseolus vulgaris L.), representing genetic diversity in the entire Mexican holding, is kept at the INIFAP (Instituto Nacional de Investigaciones Forestales, Agricolas y Pecuarias, Mexico) Germplasm Bank. After evaluation, the genetic structure of this collection (200 accessions) was compared with that of landraces from the states of Oaxaca, Chiapas and Veracruz (10 genotypes from each), as well as a further 10 cultivars, by means of four amplified fragment length polymorphisms (AFLP) +3/+3 primer combinations and seven simple sequence repeats (SSR) loci, in order to define genetic diversity, variability and mutual relationships. Data underwent cluster (UPGMA) and molecular variance (AMOVA) analyses. AFLP analysis produced 530 bands (88.5% polymorphic) while SSR primers amplified 174 alleles, all polymorphic (8.2 alleles per locus). AFLP indicated that the highest genetic diversity was to be found in ten commercial-seed classes from two major groups of accessions from Central Mexico and Chiapas, which seems to be an important center of diversity in the south. A third group included genotypes from Nueva Granada, Mesoamerica, Jalisco and Durango races. Here, SSR analysis indicated a reduced number of shared haplotypes among accessions, whereas the highest genetic components of AMOVA variation were found within accessions. Genetic diversity observed in the common-bean core collection represents an important sample of the total Phaseolus genetic variability at the main Germplasm Bank of INIFAP. Molecular marker strategies could contribute to a better understanding of the genetic structure of the core collection as well as to its improvement and validation.

ACTRAN: a code for depletion calculations in PWR cores aiming the production of minor actinide for using in ADS

International Nuclear Information System (INIS)

Santos, Rubens Souza dos

2009-01-01

Despite of the renewed willing to accept nuclear power as a mean of mitigate the climate changing, to deal with the long lived waste still cause some concerning in relation to maintain in safety condition, during so many years. A technological solution to overcome this leg of time is to use a facility that burn these waste, besides to generate electricity. This is the idea built in the accelerator driven systems (ADS). This technology is being though to use some minor actinides (MAs) as fuel. This work presents a program to assess actinide concentrations, aiming a fertile-free fuel to be used in the future ADS technology. For that, use was made of a numerical code to solve the steady-state multigroup diffusion equation 3D to calculate the neutron fluxes, coupled it with a new code to solve, also numerically, depletion equations, named ACTRAN code. This paper shows the simulation of a PWR core during the residence time of the nuclear fuel, for three years, and after, for almost four hundred years, to assess the MAs production. The results show some insight in the best management to get a minimum amount of some MAs to use in the future generations of ADS. (author)

Coarse-grained parallel genetic algorithm applied to a nuclear reactor core design optimization problem

International Nuclear Information System (INIS)

Pereira, Claudio M.N.A.; Lapa, Celso M.F.

2003-01-01

This work extends the research related to generic algorithms (GA) in core design optimization problems, which basic investigations were presented in previous work. Here we explore the use of the Island Genetic Algorithm (IGA), a coarse-grained parallel GA model, comparing its performance to that obtained by the application of a traditional non-parallel GA. The optimization problem consists on adjusting several reactor cell parameters, such as dimensions, enrichment and materials, in order to minimize the average peak-factor in a 3-enrichment zone reactor, considering restrictions on the average thermal flux, criticality and sub-moderation. Our IGA implementation runs as a distributed application on a conventional local area network (LAN), avoiding the use of expensive parallel computers or architectures. After exhaustive experiments, taking more than 1500 h in 550 MHz personal computers, we have observed that the IGA provided gains not only in terms of computational time, but also in the optimization outcome. Besides, we have also realized that, for such kind of problem, which fitness evaluation is itself time consuming, the time overhead in the IGA, due to the communication in LANs, is practically imperceptible, leading to the conclusion that the use of expensive parallel computers or architecture can be avoided

Analysis of Genetic Diversity and Population Structure of Rice Germplasm from North-Eastern Region of India and Development of a Core Germplasm Set

Science.gov (United States)

Singh, Amit Kumar; Kumar, Sundeep; Srinivasan, Kalyani; Tyagi, R. K.; Ahmad, Altaf; Singh, N. K.; Singh, Rakesh

2014-01-01

The North-Eastern region (NER) of India, comprising of Arunachal Pradesh, Assam, Manipur, Meghalaya, Mizoram, Nagaland and Tripura, is a hot spot for genetic diversity and the most probable origin of rice. North-east rice collections are known to possess various agronomically important traits like biotic and abiotic stress tolerance, unique grain and cooking quality. The genetic diversity and associated population structure of 6,984 rice accessions, originating from NER, were assessed using 36 genome wide unlinked single nucleotide polymorphism (SNP) markers distributed across the 12 rice chromosomes. All of the 36 SNP loci were polymorphic and bi-allelic, contained five types of base substitutions and together produced nine types of alleles. The polymorphic information content (PIC) ranged from 0.004 for Tripura to 0.375 for Manipur and major allele frequency ranged from 0.50 for Assam to 0.99 for Tripura. Heterozygosity ranged from 0.002 in Nagaland to 0.42 in Mizoram and gene diversity ranged from 0.006 in Arunachal Pradesh to 0.50 in Manipur. The genetic relatedness among the rice accessions was evaluated using an unrooted phylogenetic tree analysis, which grouped all accessions into three major clusters. For determining population structure, populations K = 1 to K = 20 were tested and population K = 3 was present in all the states, with the exception of Meghalaya and Manipur where, K = 5 and K = 4 populations were present, respectively. Principal Coordinate Analysis (PCoA) showed that accessions were distributed according to their population structure. AMOVA analysis showed that, maximum diversity was partitioned at the individual accession level (73% for Nagaland, 58% for Arunachal Pradesh and 57% for Tripura). Using POWERCORE software, a core set of 701 accessions was obtained, which accounted for approximately 10% of the total NE India collections, representing 99.9% of the allelic diversity. The rice core set developed will be a

Analysis of genetic diversity and population structure of rice germplasm from north-eastern region of India and development of a core germplasm set.

Directory of Open Access Journals (Sweden)

Debjani Roy Choudhury

Full Text Available The North-Eastern region (NER of India, comprising of Arunachal Pradesh, Assam, Manipur, Meghalaya, Mizoram, Nagaland and Tripura, is a hot spot for genetic diversity and the most probable origin of rice. North-east rice collections are known to possess various agronomically important traits like biotic and abiotic stress tolerance, unique grain and cooking quality. The genetic diversity and associated population structure of 6,984 rice accessions, originating from NER, were assessed using 36 genome wide unlinked single nucleotide polymorphism (SNP markers distributed across the 12 rice chromosomes. All of the 36 SNP loci were polymorphic and bi-allelic, contained five types of base substitutions and together produced nine types of alleles. The polymorphic information content (PIC ranged from 0.004 for Tripura to 0.375 for Manipur and major allele frequency ranged from 0.50 for Assam to 0.99 for Tripura. Heterozygosity ranged from 0.002 in Nagaland to 0.42 in Mizoram and gene diversity ranged from 0.006 in Arunachal Pradesh to 0.50 in Manipur. The genetic relatedness among the rice accessions was evaluated using an unrooted phylogenetic tree analysis, which grouped all accessions into three major clusters. For determining population structure, populations K = 1 to K = 20 were tested and population K = 3 was present in all the states, with the exception of Meghalaya and Manipur where, K = 5 and K = 4 populations were present, respectively. Principal Coordinate Analysis (PCoA showed that accessions were distributed according to their population structure. AMOVA analysis showed that, maximum diversity was partitioned at the individual accession level (73% for Nagaland, 58% for Arunachal Pradesh and 57% for Tripura. Using POWERCORE software, a core set of 701 accessions was obtained, which accounted for approximately 10% of the total NE India collections, representing 99.9% of the allelic diversity. The rice core set developed

Analysis of genetic diversity and population structure of rice germplasm from north-eastern region of India and development of a core germplasm set.

Science.gov (United States)

Roy Choudhury, Debjani; Singh, Nivedita; Singh, Amit Kumar; Kumar, Sundeep; Srinivasan, Kalyani; Tyagi, R K; Ahmad, Altaf; Singh, N K; Singh, Rakesh

2014-01-01

The North-Eastern region (NER) of India, comprising of Arunachal Pradesh, Assam, Manipur, Meghalaya, Mizoram, Nagaland and Tripura, is a hot spot for genetic diversity and the most probable origin of rice. North-east rice collections are known to possess various agronomically important traits like biotic and abiotic stress tolerance, unique grain and cooking quality. The genetic diversity and associated population structure of 6,984 rice accessions, originating from NER, were assessed using 36 genome wide unlinked single nucleotide polymorphism (SNP) markers distributed across the 12 rice chromosomes. All of the 36 SNP loci were polymorphic and bi-allelic, contained five types of base substitutions and together produced nine types of alleles. The polymorphic information content (PIC) ranged from 0.004 for Tripura to 0.375 for Manipur and major allele frequency ranged from 0.50 for Assam to 0.99 for Tripura. Heterozygosity ranged from 0.002 in Nagaland to 0.42 in Mizoram and gene diversity ranged from 0.006 in Arunachal Pradesh to 0.50 in Manipur. The genetic relatedness among the rice accessions was evaluated using an unrooted phylogenetic tree analysis, which grouped all accessions into three major clusters. For determining population structure, populations K = 1 to K = 20 were tested and population K = 3 was present in all the states, with the exception of Meghalaya and Manipur where, K = 5 and K = 4 populations were present, respectively. Principal Coordinate Analysis (PCoA) showed that accessions were distributed according to their population structure. AMOVA analysis showed that, maximum diversity was partitioned at the individual accession level (73% for Nagaland, 58% for Arunachal Pradesh and 57% for Tripura). Using POWERCORE software, a core set of 701 accessions was obtained, which accounted for approximately 10% of the total NE India collections, representing 99.9% of the allelic diversity. The rice core set developed will be a

Phenotypic evaluation and genetic dissection of resistance to Phytophthora sojae in the Chinese soybean mini core collection.

Science.gov (United States)

Huang, Jing; Guo, Na; Li, Yinghui; Sun, Jutao; Hu, Guanjun; Zhang, Haipeng; Li, Yanfei; Zhang, Xing; Zhao, Jinming; Xing, Han; Qiu, Lijuan

2016-06-18

Phytophthora root and stem rot (PRR) caused by Phytophthora sojae is one of the most serious diseases affecting soybean (Glycine max (L.) Merr.) production all over the world. The most economical and environmentally-friendly way to control the disease is the exploration and utilization of resistant varieties. We screened a soybean mini core collection composed of 224 germplasm accessions for resistance against eleven P. sojae isolates. Soybean accessions from the Southern and Huanghuai regions, especially the Hubei, Jiangsu, Sichuan and Fujian provinces, had the most varied and broadest spectrum of resistance. Based on gene postulation, Rps1b, Rps1c, Rps4, Rps7 and novel resistance genes were identified in resistant accessions. Consequently, association mapping of resistance to each isolate was performed with 1,645 single nucleotide polymorphism (SNP) markers. A total of 14 marker-trait associations for Phytophthora resistance were identified. Among them, four were located in known PRR resistance loci intervals, five were located in other disease resistance quantitative trait locus (QTL) regions, and five associations unmasked novel loci for PRR resistance. In addition, we also identified candidate genes related to resistance. This is the first P. sojae resistance evaluation conducted using the Chinese soybean mini core collection, which is a representative sample of Chinese soybean cultivars. The resistance reaction analyses provided an excellent database of resistant resources and genetic variations for future breeding programs. The SNP markers associated with resistance will facilitate marker-assisted selection (MAS) in breeding programs for resistance to PRR, and the candidate genes may be useful for exploring the mechanism underlying P. sojae resistance.

Directed genetic modification of African horse sickness virus by reverse genetics

Directory of Open Access Journals (Sweden)

Elaine Vermaak

2015-07-01

Full Text Available African horse sickness virus (AHSV, a member of the Orbivirus genus in the family Reoviridae, is an arthropod-transmitted pathogen that causes a devastating disease in horses with a mortality rate greater than 90%. Fundamental research on AHSV and the development of safe, efficacious vaccines could benefit greatly from an uncomplicated genetic modification method to generate recombinant AHSV. We demonstrate that infectious AHSV can be recovered by transfection of permissive mammalian cells with transcripts derived in vitro from purified AHSV core particles. These findings were expanded to establish a genetic modification system for AHSV that is based on transfection of the cells with a mixture of purified core transcripts and a synthetic T7 transcript. This approach was applied successfully to recover a directed cross-serotype reassortant AHSV and to introduce a marker sequence into the viral genome. The ability to manipulate the AHSV genome and engineer specific mutants will increase understanding of AHSV replication and pathogenicity, as well as provide a tool for generating designer vaccine strains.

Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation.

Science.gov (United States)

Inglin, Raffael C; Meile, Leo; Stevens, Marc J A

2018-04-24

Bacterial taxonomy aims to classify bacteria based on true evolutionary events and relies on a polyphasic approach that includes phenotypic, genotypic and chemotaxonomic analyses. Until now, complete genomes are largely ignored in taxonomy. The genus Lactobacillus consists of 173 species and many genomes are available to study taxonomy and evolutionary events. We analyzed and clustered 98 completely sequenced genomes of the genus Lactobacillus and 234 draft genomes of 5 different Lactobacillus species, i.e. L. reuteri, L. delbrueckii, L. plantarum, L. rhamnosus and L. helveticus. The core-genome of the genus Lactobacillus contains 266 genes and the pan-genome 20'800 genes. Clustering of the Lactobacillus pan- and core-genome resulted in two highly similar trees. This shows that evolutionary history is traceable in the core-genome and that clustering of the core-genome is sufficient to explore relationships. Clustering of core- and pan-genomes at species' level resulted in similar trees as well. Detailed analyses of the core-genomes showed that the functional class "genetic information processing" is conserved in the core-genome but that "signaling and cellular processes" is not. The latter class encodes functions that are involved in environmental interactions. Evolution of lactobacilli seems therefore directed by the environment. The type species L. delbrueckii was analyzed in detail and its pan-genome based tree contained two major clades whose members contained different genes yet identical functions. In addition, evidence for horizontal gene transfer between strains of L. delbrueckii, L. plantarum, and L. rhamnosus, and between species of the genus Lactobacillus is presented. Our data provide evidence for evolution of some lactobacilli according to a parapatric-like model for species differentiation. Core-genome trees are useful to detect evolutionary relationships in lactobacilli and might be useful in taxonomic analyses. Lactobacillus' evolution is directed

Multi-core MgO NPs(at)C core-shell nanospheres for selective CO2 capture under mild conditions

International Nuclear Information System (INIS)

Tae Kyung Kim; Kyung Joo Lee; Hoi Ri Moon; Junhan Yuh; Sang Kyu Kwak

2014-01-01

The core-shell structures have attracted attention in catalysis, because the outer shells isolate the catalytically active NP cores and prevent the possibility of sintering of core particles during catalytic reaction under physically and chemically harsh conditions. We aimed to adopt this core-shell system for CO 2 sorption materials. In this study, a composite material of multi-core 3 nm-sized magnesium oxide nanoparticles embedded in porous carbon nanospheres (MgO NPs(at)C) was synthesized by a gas phase reaction via a solvent-free process. It showed selective CO 2 adsorption capacity over N 2 under mild regeneration conditions. (authors)

Development of the Northern European Ribes core collection based on a microsatellite (SSR) marker diversity analysis

DEFF Research Database (Denmark)

Antonius, Kristiina; Karhu, S.; Kaldmäe, H.

2012-01-01

The purpose of the study was to support the selection process of the most valuable currant and gooseberry accessions cultivated in Northern Europe, in order to establish a decentralized core collection and, following the selection, to ensure sufficient genetic diversity in the selected collection....... Molecular analyses of the material from nine project partners were run at seven different laboratories. The results were first analysed for each partner separately, and then combined to ensure sufficient genetic diversity in the core collection....

Genetics education for non-genetic health care professionals in the Netherlands

NARCIS (Netherlands)

Plass, Anne Marie C.; Baars, Marieke J. H.; Beemer, Frits A.; ten Kate, Leo P.

2006-01-01

OBJECTIVE: The aim of the present study was to investigate whether medical care providers in the Netherlands are adequately educated in genetics by collecting information about the current state of genetics education of non-genetics health care professionals. METHOD: The curricula of the 8

Multiplexing and data processing of in-core signals

International Nuclear Information System (INIS)

Meyer, M.

1983-01-01

The application of multiplexing and signal processing techniques used for reactor operation and utilisation of data from the in-core instrumentation system is described. After a brief recall about in-core instrumentation, the aims, the advantages of multiplexing are presented. One of the aims of this realization is to show the compatibity between the technologies used with a PWR environment [fr

CORE: a phylogenetically-curated 16S rDNA database of the core oral microbiome.

Directory of Open Access Journals (Sweden)

Ann L Griffen

2011-04-01

Full Text Available Comparing bacterial 16S rDNA sequences to GenBank and other large public databases via BLAST often provides results of little use for identification and taxonomic assignment of the organisms of interest. The human microbiome, and in particular the oral microbiome, includes many taxa, and accurate identification of sequence data is essential for studies of these communities. For this purpose, a phylogenetically curated 16S rDNA database of the core oral microbiome, CORE, was developed. The goal was to include a comprehensive and minimally redundant representation of the bacteria that regularly reside in the human oral cavity with computationally robust classification at the level of species and genus. Clades of cultivated and uncultivated taxa were formed based on sequence analyses using multiple criteria, including maximum-likelihood-based topology and bootstrap support, genetic distance, and previous naming. A number of classification inconsistencies for previously named species, especially at the level of genus, were resolved. The performance of the CORE database for identifying clinical sequences was compared to that of three publicly available databases, GenBank nr/nt, RDP and HOMD, using a set of sequencing reads that had not been used in creation of the database. CORE offered improved performance compared to other public databases for identification of human oral bacterial 16S sequences by a number of criteria. In addition, the CORE database and phylogenetic tree provide a framework for measures of community divergence, and the focused size of the database offers advantages of efficiency for BLAST searching of large datasets. The CORE database is available as a searchable interface and for download at http://microbiome.osu.edu.

Improvement in PWR automatic optimization reloading methods using genetic algorithm

International Nuclear Information System (INIS)

Levine, S.H.; Ivanov, K.; Feltus, M.

1996-01-01

The objective of using automatic optimized reloading methods is to provide the Nuclear Engineer with an efficient method for reloading a nuclear reactor which results in superior core configurations that minimize fuel costs. Previous methods developed by Levine et al required a large effort to develop the initial core loading using a priority loading scheme. Subsequent modifications to this core configuration were made using expert rules to produce the final core design. Improvements in this technique have been made by using a genetic algorithm to produce improved core reload designs for PWRs more efficiently (authors)

Improvement in PWR automatic optimization reloading methods using genetic algorithm

Energy Technology Data Exchange (ETDEWEB)

Levine, S H; Ivanov, K; Feltus, M [Pennsylvania State Univ., University Park, PA (United States)

1996-12-01

The objective of using automatic optimized reloading methods is to provide the Nuclear Engineer with an efficient method for reloading a nuclear reactor which results in superior core configurations that minimize fuel costs. Previous methods developed by Levine et al required a large effort to develop the initial core loading using a priority loading scheme. Subsequent modifications to this core configuration were made using expert rules to produce the final core design. Improvements in this technique have been made by using a genetic algorithm to produce improved core reload designs for PWRs more efficiently (authors).

Core Knowledge Confusions among University Students

Science.gov (United States)

Lindeman, Marjaana; Svedholm, Annika M.; Takada, Mikito; Lonnqvist, Jan-Erik; Verkasalo, Markku

2011-01-01

Previous studies have demonstrated that university students hold several paranormal beliefs and that paranormal beliefs can be best explained with core knowledge confusions. The aim of this study was to explore to what extent university students confuse the core ontological attributes of lifeless material objects (e.g. a house, a stone), living…

Investigating core genetic-and-epigenetic cell cycle networks for stemness and carcinogenic mechanisms, and cancer drug design using big database mining and genome-wide next-generation sequencing data.

Science.gov (United States)

Li, Cheng-Wei; Chen, Bor-Sen

2016-10-01

Recent studies have demonstrated that cell cycle plays a central role in development and carcinogenesis. Thus, the use of big databases and genome-wide high-throughput data to unravel the genetic and epigenetic mechanisms underlying cell cycle progression in stem cells and cancer cells is a matter of considerable interest. Real genetic-and-epigenetic cell cycle networks (GECNs) of embryonic stem cells (ESCs) and HeLa cancer cells were constructed by applying system modeling, system identification, and big database mining to genome-wide next-generation sequencing data. Real GECNs were then reduced to core GECNs of HeLa cells and ESCs by applying principal genome-wide network projection. In this study, we investigated potential carcinogenic and stemness mechanisms for systems cancer drug design by identifying common core and specific GECNs between HeLa cells and ESCs. Integrating drug database information with the specific GECNs of HeLa cells could lead to identification of multiple drugs for cervical cancer treatment with minimal side-effects on the genes in the common core. We found that dysregulation of miR-29C, miR-34A, miR-98, and miR-215; and methylation of ANKRD1, ARID5B, CDCA2, PIF1, STAMBPL1, TROAP, ZNF165, and HIST1H2AJ in HeLa cells could result in cell proliferation and anti-apoptosis through NFκB, TGF-β, and PI3K pathways. We also identified 3 drugs, methotrexate, quercetin, and mimosine, which repressed the activated cell cycle genes, ARID5B, STK17B, and CCL2, in HeLa cells with minimal side-effects.

Application of genetic algorithm in reactor fuel management

International Nuclear Information System (INIS)

Peng Gang

2002-01-01

The genetic algorithm (GA) has been used in reactor fuel management of core arrangement optimal calculation. The chromosome coding method has been selected, and the parameters in GA operators have been improved, so the quality and efficiency of calculation in GA program have been greatly improved. According to the result, better core fuel position arrangement can be obtained from the GA calculation

Prediction and Optimization of Key Performance Indicators in the Production of Stator Core Using a GA-NN Approach

Science.gov (United States)

Rajora, M.; Zou, P.; Xu, W.; Jin, L.; Chen, W.; Liang, S. Y.

2017-12-01

With the rapidly changing demands of the manufacturing market, intelligent techniques are being used to solve engineering problems due to their ability to handle nonlinear complex problems. For example, in the conventional production of stator cores, it is relied upon experienced engineers to make an initial plan on the number of compensation sheets to be added to achieve uniform pressure distribution throughout the laminations. Additionally, these engineers must use their experience to revise the initial plans based upon the measurements made during the production of stator core. However, this method yields inconsistent results as humans are incapable of storing and analysing large amounts of data. In this article, first, a Neural Network (NN), trained using a hybrid Levenberg-Marquardt (LM) - Genetic Algorithm (GA), is developed to assist the engineers with the decision-making process. Next, the trained NN is used as a fitness function in an optimization algorithm to find the optimal values of the initial compensation sheet plan with the aim of minimizing the required revisions during the production of the stator core.

Different Paths to Core Pathology: The Equifinal Model of the Schizophrenia Syndrome.

Science.gov (United States)

Green, Isobel W; Glausier, Jill R

2016-05-01

Schizophrenia is a clinically heterogeneous disorder that is perhaps more accurately characterized as "the schizophrenia syndrome." This clinical heterogeneity is reflected in the heterogeneous neurobiological presentations associated with the illness. Moreover, even highly specific neural aberrations that are associated with distinct symptoms of schizophrenia are linked to a wide range of risk factors. As such, any individual with schizophrenia likely has a particular set of risk factors that interact and converge to cross the disease threshold, forming a particular etiology that ultimately generates a core pathophysiology. This core pathophysiology may then produce 1 or more symptoms of schizophrenia, leading to common symptoms across individuals in spite of disparate etiologies. As such, the schizophrenia syndrome can be considered as anequifinalentity: a state of dysfunction that can arise from different upstream etiologies. Moreover, schizophrenia etiologies are multifactorial and can involve the interactive effects of a broad range of genetic, environmental, and developmental risk factors. Through a consideration of how disparate etiologies, caused by different sets of risk factors, converge on the same net dysfunction, this paper aims to model the equifinal nature of schizophrenia symptoms. To demonstrate the equifinal model, we discuss how maternal infection and adolescent cannabis use, 2 recognized schizophrenia risk factors, may interact with other genetic, environmental, and/or developmental risk factors to cause the conserved clinical presentation of impaired working memory. © The Author 2015. Published by Oxford University Press on behalf of the Maryland Psychiatric Research Center. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Core design study on reduced-moderation water reactors

International Nuclear Information System (INIS)

Hiroshi, Akie; Yoshihiro, Nakano; Toshihisa, Shirakawa; Tsutomu, Okubo; Takamichi, Iwamura

2002-01-01

The conceptual core design study of reduced-moderation water reactors (RMWRs) with tight-pitched MOX-fuelled lattice has been carried out at JAERI. Several different RMWR core concepts based on both BWR and PWR have been proposed. All the core concepts meet with the aim to achieve both a conversion ratio of 1.0 or larger and negative void reactivity coefficient. As one of these RMWR concepts, the ABWR compatible core is also proposed. Although the conversion ratio of this core is 1.0 and the void coefficient is negative, the discharge burn-up of the fuel was about 25 GWd/t. By adopting a triangular fuel pin lattice for the reduction of moderator volume fraction and modifying axial Pu enrichment distribution, it was aimed to extend the discharge burn-up of ABWR compatible type RMWR. By using a triangular fuel lattice of smaller moderator volume fraction, discharge burn-up of 40 GWd/t seems achievable, keeping the high conversion ratio and the negative void coefficient. (authors)

Darwin Core: An Evolving Community-Developed Biodiversity Data Standard

Science.gov (United States)

Wieczorek, John; Bloom, David; Guralnick, Robert; Blum, Stan; Döring, Markus; Giovanni, Renato; Robertson, Tim; Vieglais, David

2012-01-01

Biodiversity data derive from myriad sources stored in various formats on many distinct hardware and software platforms. An essential step towards understanding global patterns of biodiversity is to provide a standardized view of these heterogeneous data sources to improve interoperability. Fundamental to this advance are definitions of common terms. This paper describes the evolution and development of Darwin Core, a data standard for publishing and integrating biodiversity information. We focus on the categories of terms that define the standard, differences between simple and relational Darwin Core, how the standard has been implemented, and the community processes that are essential for maintenance and growth of the standard. We present case-study extensions of the Darwin Core into new research communities, including metagenomics and genetic resources. We close by showing how Darwin Core records are integrated to create new knowledge products documenting species distributions and changes due to environmental perturbations. PMID:22238640

Analysis of genetic diversity and construction of core collection of ...

African Journals Online (AJOL)

Jane

2011-06-03

Jun 3, 2011 ... Genetic diversity of 73 local mulberry varieties from Shanxi Province were screened using ISSR markers, with l5 primers combinations selected for their reproducibility and polymorphism. 129 bands were amplified, of which 115 bands showed polymorphism and the ratio of polymorphism bands was.

Insight into the genetics of hypertension, a core component of the metabolic syndrome

Czech Academy of Sciences Publication Activity Database

Pravenec, Michal; Petretto, E.

2008-01-01

Roč. 11, - (2008), s. 393-397 ISSN 1363-1950 Grant - others:HHMI(US) 55005624; EURATOOLS(XE) LSHG-CT-2005-019015 Institutional research plan: CEZ:AV0Z50110509 Keywords : genetics * hypertension * genome-wide association studies Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 3.690, year: 2008

An overview of posttraumatic stress disorder genetic studies by analyzing and integrating genetic data into genetic database PTSDgene

NARCIS (Netherlands)

Zhang, Kunlin; Qu, Susu; Chang, Suhua; Li, Gen; Cao, Chengqi; Fang, Kechi; Olff, Miranda; Wang, Li; Wang, Jing

2017-01-01

Posttraumatic stress disorder (PTSD) is a debilitating psychiatric syndrome with complex etiology. Studies aiming to explore genetic susceptibility and environmental triggers of PTSD have been increasing. However, the results are limited and highly heterogeneous. To understand the genetic study

Two Novel Rab2 Interactors Regulate Dense-core Vesicle Maturation

Science.gov (United States)

Ailion, Michael; Hannemann, Mandy; Dalton, Susan; Pappas, Andrea; Watanabe, Shigeki; Hegermann, Jan; Liu, Qiang; Han, Hsiao-Fen; Gu, Mingyu; Goulding, Morgan Q.; Sasidharan, Nikhil; Schuske, Kim; Hullett, Patrick; Eimer, Stefan; Jorgensen, Erik M.

2014-01-01

Summary Peptide neuromodulators are released from a unique organelle: the dense-core vesicle. Dense-core vesicles are generated at the trans-Golgi, and then sort cargo during maturation before being secreted. To identify proteins that act in this pathway, we performed a genetic screen in Caenorhabditis elegans for mutants defective in dense-core vesicle function. We identified two conserved Rab2-binding proteins: RUND-1, a RUN domain protein, and CCCP-1, a coiled-coil protein. RUND-1 and CCCP-1 colocalize with RAB-2 at the Golgi, and rab-2, rund-1 and cccp-1 mutants have similar defects in sorting soluble and transmembrane dense-core vesicle cargos. RUND-1 also interacts with the Rab2 GAP protein TBC-8 and the BAR domain protein RIC-19, a RAB-2 effector. In summary, a new pathway of conserved proteins controls the maturation of dense-core vesicles at the trans-Golgi network. PMID:24698274

Korrelasjon mellom core styrke, core stabilitet og utholdende styrke i core

OpenAIRE

Berg-Olsen, Andrea Marie; Fugelsøy, Eivor; Maurstad, Ann-Louise

2010-01-01

Formålet med studien var å se hvilke korrelasjon det er mellom core styrke, core stabilitet og utholdende styrke i core. Testingen bestod av tre hoveddeler hvor vi testet core styrke, core stabilitet og utholdende styrke i core. Innenfor core styrke og utholdende styrke i core ble tre ulike tester utført. Ved måling av core stabilitet ble det gjennomført kun en test. I core styrke ble isometrisk abdominal fleksjon, isometrisk rygg ekstensjon og isometrisk lateral fleksjon testet. Sit-ups p...

Development of a core outcome set for clinical trials in facial aging: study protocol for a systematic review of the literature and identification of a core outcome set using a Delphi survey.

Science.gov (United States)

Schlessinger, Daniel I; Iyengar, Sanjana; Yanes, Arianna F; Henley, Jill K; Ashchyan, Hovik J; Kurta, Anastasia O; Patel, Payal M; Sheikh, Umar A; Franklin, Matthew J; Hanna, Courtney C; Chen, Brian R; Chiren, Sarah G; Schmitt, Jochen; Deckert, Stefanie; Furlan, Karina C; Poon, Emily; Maher, Ian A; Cartee, Todd V; Sobanko, Joseph F; Alam, Murad

2017-08-01

Facial aging is a concern for many patients. Wrinkles, loss of volume, and discoloration are common physical manifestations of aging skin. Genetic heritage, prior ultraviolet light exposure, and Fitzpatrick skin type may be associated with the rate and type of facial aging. Although many clinical trials assess the correlates of skin aging, there is heterogeneity in the outcomes assessed, which limits the quality of evaluation and comparison of treatment modalities. To address the inconsistency in outcomes, in this project we will develop a core set of outcomes that are to be evaluated in all clinical trials relevant to facial aging. A long list of measureable outcomes will be created from four sources: (1) systematic medical literature review, (2) patient interviews, (3) other published sources, and (4) stakeholder involvement. Two rounds of Delphi processes with homogeneous groups of physicians and patients will be performed to prioritize and condense the list. At a consensus meeting attended by physicians, patients, and stakeholders, outcomes will be further condensed on the basis of participant scores. By the end of the meeting, members will vote and decide on a final recommended set of core outcomes. Subsequent to this, specific measures will be selected or created to assess these outcomes. The aim of this study is to develop a core outcome set and relevant measures for clinical trials relevant to facial aging. We hope to improve the reliability and consistency of outcome reporting of skin aging, thereby enabling improved evaluation of treatment efficacy and patient satisfaction. Core Outcome Measures in Effectiveness Trials (COMET) Initiative, accessible at http://www.comet-initiative.org/studies/details/737 . Core Outcomes Set Initiative, (CSG-COUSIN) accessible at https://www.uniklinikum-dresden.de/de/das-klinikum/universitaetscentren/zegv/cousin/meet-the-teams/project-groups/core-outcome-set-for-the-appearance-of-facial-aging . Protocol version date is 28

Lack of Association between Hepatitis C Virus core Gene Variation 70/91aa and Insulin Resistance.

Science.gov (United States)

Scalioni, Letícia de Paula; da Silva, Allan Peres; Miguel, Juliana Custódio; Espírito Santo, Márcia Paschoal do; Marques, Vanessa Alves; Brandão-Mello, Carlos Eduardo; Villela-Nogueira, Cristiane Alves; Lewis-Ximenez, Lia Laura; Lampe, Elisabeth; Villar, Livia Melo

2017-07-21

The role of hepatitis C virus (HCV) in insulin resistance (IR) is not fully understood. The aim of this study was to determine the impact of amino acid (aa) substitutions in the core region of HCV according to IR and to identify clinical and laboratory associations. Ninety-two treatment-naive HCV patients were recruited to determine laboratory data and blood cell count. IR was determined using Homeostasis Model Assessment (HOMA) index where IR was defined as HOMA ≥2. HCV RNA load and genotype were determined by Abbott Real time HCV. HCV core region was determined by direct nucleotide sequencing. Bivariate analysis was conducted using HOMA IR ≥2 as a dependent factor. IR prevalence was 43.5% ( n = 40), vitamin D sufficiency was found in 76.1% ( n = 70) and 72.8% ( n = 67) had advanced liver fibrosis. In the bivariate analyses, elevated values of γGT ( p = 0.024) and fibrosis staging ( p = 0.004) were associated with IR, but IR was not related to core mutations. The presence of glutamine in position 70 was associated with low vitamin D concentration ( p = 0.005). In the multivariate analysis, no variable was independently associated with HOMA-IR. In conclusion, lack of association between IR and HCV core mutations in positions 70 and 91 suggests that genetic variability of this region has little impact on IR.

Nuclear reactors project optimization based on neural network and genetic algorithm

International Nuclear Information System (INIS)

Pereira, Claudio M.N.A.; Schirru, Roberto; Martinez, Aquilino S.

1997-01-01

This work presents a prototype of a system for nuclear reactor core design optimization based on genetic algorithms and artificial neural networks. A neural network is modeled and trained in order to predict the flux and the neutron multiplication factor values based in the enrichment, network pitch and cladding thickness, with average error less than 2%. The values predicted by the neural network are used by a genetic algorithm in this heuristic search, guided by an objective function that rewards the high flux values and penalizes multiplication factors far from the required value. Associating the quick prediction - that may substitute the reactor physics calculation code - with the global optimization capacity of the genetic algorithm, it was obtained a quick and effective system for nuclear reactor core design optimization. (author). 11 refs., 8 figs., 3 tabs

The Autism Impact Measure (AIM): Initial Development of a New Tool for Treatment Outcome Measurement

Science.gov (United States)

Kanne, Stephen M.; Mazurek, Micah O.; Sikora, Darryn; Bellando, Jayne; Branum-Martin, Lee; Handen, Benjamin; Katz, Terry; Freedman, Brian; Powell, Mary Paige; Warren, Zachary

2014-01-01

The current study describes the development and psychometric properties of a new measure targeting sensitivity to change of core autism spectrum disorder (ASD) symptoms, the Autism Impact Measure (AIM). The AIM uses a 2-week recall period with items rated on two corresponding 5-point scales (frequency and impact). Psychometric properties were…

The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles.

Directory of Open Access Journals (Sweden)

Irini Topalidou

2016-05-01

Full Text Available The dense-core vesicle is a secretory organelle that mediates the regulated release of peptide hormones, growth factors, and biogenic amines. Dense-core vesicles originate from the trans-Golgi of neurons and neuroendocrine cells, but it is unclear how this specialized organelle is formed and acquires its specific cargos. To identify proteins that act in dense-core vesicle biogenesis, we performed a forward genetic screen in Caenorhabditis elegans for mutants defective in dense-core vesicle function. We previously reported the identification of two conserved proteins that interact with the small GTPase RAB-2 to control normal dense-core vesicle cargo-sorting. Here we identify several additional conserved factors important for dense-core vesicle cargo sorting: the WD40 domain protein EIPR-1 and the endosome-associated recycling protein (EARP complex. By assaying behavior and the trafficking of dense-core vesicle cargos, we show that mutants that lack EIPR-1 or EARP have defects in dense-core vesicle cargo-sorting similar to those of mutants in the RAB-2 pathway. Genetic epistasis data indicate that RAB-2, EIPR-1 and EARP function in a common pathway. In addition, using a proteomic approach in rat insulinoma cells, we show that EIPR-1 physically interacts with the EARP complex. Our data suggest that EIPR-1 is a new interactor of the EARP complex and that dense-core vesicle cargo sorting depends on the EARP-dependent trafficking of cargo through an endosomal sorting compartment.

Genetic algorithms applied to the nuclear power plant operation

International Nuclear Information System (INIS)

Schirru, R.; Martinez, A.S.; Pereira, C.M.N.A.

2000-01-01

Nuclear power plant operation often involves very important human decisions, such as actions to be taken after a nuclear accident/transient, or finding the best core reload pattern, a complex combinatorial optimization problem which requires expert knowledge. Due to the complexity involved in the decisions to be taken, computerized systems have been intensely explored in order to aid the operator. Following hardware advances, soft computing has been improved and, nowadays, intelligent technologies, such as genetic algorithms, neural networks and fuzzy systems, are being used to support operator decisions. In this chapter two main problems are explored: transient diagnosis and nuclear core refueling. Here, solutions to such kind of problems, based on genetic algorithms, are described. A genetic algorithm was designed to optimize the nuclear fuel reload of Angra-1 nuclear power plant. Results compared to those obtained by an expert reveal a gain in the burn-up cycle. Two other genetic algorithm approaches were used to optimize real time diagnosis systems. The first one learns partitions in the time series that represents the transients, generating a set of classification centroids. The other one involves the optimization of an adaptive vector quantization neural network. Results are shown and commented. (orig.)

Core design studies on various forms of coolants and fuel materials. 2. Studies on liquid heavy metal and gas cooled cores, small cores and evaluation of 4-type cores

International Nuclear Information System (INIS)

Hayashi, Hideyuki; Sakashita, Yoshiyuki; Naganuma, Masayuki; Takaki, Naoyuki; Mizuno, Tomoyasu; Ikegami, Tetsuo

2001-01-01

Alternative concepts to sodium cooled fast reactors, such as heavy metal liquid cooled reactors and gas cooled fast reactors were studied in Phase-1 of the feasibility studies, aiming at simplification of the system, high thermal efficiency and enhancing safety. Fuel and core specifications and nuclear characteristics were surveyed to meet the targets for commercialization of fast reactor cycle. Nuclear characteristics of small fast reactor cores were also surveyed from the perspective of the possibility of multi-purpose use and dispersed power stations. The key points of the design study for each concept in Phase-2 were summarized from the aspect of the screening of the candidates for FR commercialization. (author)

Comparison of computational performance of GA and PSO optimization techniques when designing similar systems - Typical PWR core case

Energy Technology Data Exchange (ETDEWEB)

Souza Lima, Carlos A. [Instituto de Engenharia Nuclear - Divisao de Reatores/PPGIEN, Rua Helio de Almeida 75, Cidade Universitaria - Ilha do Fundao, P.O. Box: 68550 - Zip Code: 21941-972, Rio de Janeiro (Brazil); Instituto Politecnico, Universidade do Estado do Rio de Janeiro, Pos-Graduacao em Modelagem Computacional, Rua Alberto Rangel - s/n, Vila Nova, Nova Friburgo, Zip Code: 28630-050, Nova Friburgo (Brazil); Lapa, Celso Marcelo F.; Pereira, Claudio Marcio do N.A. [Instituto de Engenharia Nuclear - Divisao de Reatores/PPGIEN, Rua Helio de Almeida 75, Cidade Universitaria - Ilha do Fundao, P.O. Box: 68550 - Zip Code: 21941-972, Rio de Janeiro (Brazil); Instituto Nacional de Ciencia e Tecnologia de Reatores Nucleares Inovadores (INCT) (Brazil); Cunha, Joao J. da [Eletronuclear Eletrobras Termonuclear - Gerencia de Analise de Seguranca Nuclear, Rua da Candelaria, 65, 7 andar. Centro, Zip Code: 20091-906, Rio de Janeiro (Brazil); Alvim, Antonio Carlos M. [Universidade Federal do Rio de Janeiro, COPPE/Nuclear, Cidade Universitaria - Ilha do Fundao s/n, P.O.Box 68509 - Zip Code: 21945-970, Rio de Janeiro (Brazil); Instituto Nacional de Ciencia e Tecnologia de Reatores Nucleares Inovadores (INCT) (Brazil)

2011-06-15

Research highlights: > Performance of PSO and GA techniques applied to similar system design. > This work uses ANGRA1 (two loop PWR) core as a prototype. > Results indicate that PSO technique is more adequate than GA to solve this kind of problem. - Abstract: This paper compares the performance of two optimization techniques, particle swarm optimization (PSO) and genetic algorithm (GA) applied to the design a typical reduced scale two loop Pressurized Water Reactor (PWR) core, at full power in single phase forced circulation flow. This comparison aims at analyzing the performance in reaching the global optimum, considering that both heuristics are based on population search methods, that is, methods whose population (candidate solution set) evolve from one generation to the next using a combination of deterministic and probabilistic rules. The simulated PWR, similar to ANGRA 1 power plant, was used as a case example to compare the performance of PSO and GA. Results from simulations indicated that PSO is more adequate to solve this kind of problem.

Testing the HTA core model: experiences from two pilot projects

DEFF Research Database (Denmark)

Pasternack, Iris; Anttila, Heidi; Mäkelä, Marjukka

2009-01-01

OBJECTIVES: The aim of this study was to analyze and describe process and outcomes of two pilot assessments based on the HTA Core Model, discuss the applicability of the model, and explore areas of development. METHODS: Data were gathered from HTA Core Model and pilot Core HTA documents, their va...

Core stability training on lower limb balance strength.

Science.gov (United States)

Dello Iacono, Antonio; Padulo, Johnny; Ayalon, Moshe

2016-01-01

This study aimed to assess the effects of core stability training on lower limbs' muscular asymmetries and imbalances in team sport. Twenty footballers were divided into two groups, either core stability or control group. Before each daily practice, core stability group (n = 10) performed a core stability training programme, while control group (n = 10) did a standard warm-up. The effects of the core stability training programme were assessed by performing isokinetic tests and single-leg countermovement jumps. Significant improvement was found for knee extensors peak torque at 3.14 rad · s(-1) (14%; P core stability group. The jump tests showed a significant reduction in the strength asymmetries in core stability group (-71.4%; P = 0.02) while a concurrent increase was seen in the control group (33.3%; P core exercises for optimal lower limbs strength balance development in young soccer players.

Core vocabulary of young children with Down syndrome

NARCIS (Netherlands)

Deckers, S.R.J.M.; Zaalen, Y. van; Balkom, L.J.M. van; Verhoeven, L.T.W.

2017-01-01

The aim of this study was to develop a core vocabulary list for young children with intellectual disabilities between 2 and 7 years of age because data from this population are lacking in core vocabulary literature. Children with Down syndrome are considered one of the most valid reference groups

Core Health Outcomes In Childhood Epilepsy (CHOICE): protocol for the selection of a core outcome set.

Science.gov (United States)

Morris, Christopher; Dunkley, Colin; Gibbon, Frances M; Currier, Janet; Roberts, Deborah; Rogers, Morwenna; Crudgington, Holly; Bray, Lucy; Carter, Bernie; Hughes, Dyfrig; Tudur Smith, Catrin; Williamson, Paula R; Gringras, Paul; Pal, Deb K

2017-11-28

There is increasing recognition that establishing a core set of outcomes to be evaluated and reported in trials of interventions for particular conditions will improve the usefulness of health research. There is no established core outcome set for childhood epilepsy. The aim of this work is to select a core outcome set to be used in evaluative research of interventions for children with rolandic epilepsy, as an exemplar of common childhood epilepsy syndromes. First we will identify what outcomes should be measured; then we will decide how to measure those outcomes. We will engage relevant UK charities and health professional societies as partners, and convene advisory panels for young people with epilepsy and parents of children with epilepsy. We will identify candidate outcomes from a search for trials of interventions for childhood epilepsy, statutory guidance and consultation with our advisory panels. Families, charities and health, education and neuropsychology professionals will be invited to participate in a Delphi survey following recommended practices in the development of core outcome sets. Participants will be able to recommend additional outcome domains. Over three rounds of Delphi survey participants will rate the importance of candidate outcome domains and state the rationale for their decisions. Over the three rounds we will seek consensus across and between families and health professionals on the more important outcomes. A face-to-face meeting will be convened to ratify the core outcome set. We will then review and recommend ways to measure the shortlisted outcomes using clinical assessment and/or patient-reported outcome measures. Our methodology is a proportionate and pragmatic approach to expediently produce a core outcome set for evaluative research of interventions aiming to improve the health of children with epilepsy. A number of decisions have to be made when designing a study to develop a core outcome set including defining the scope

[Current options of preimplantion genetic screening and preimplantation genetic diagnostics].

Science.gov (United States)

Šimečková, V

The aim of this work is to summarize the current knowledge about preimplantation genetic screening and diagnostics. A review article. Department of Gynecology and Obstetrics, District Hospital Šternberk, IVF Clinic, Olomouc. Preimplantation genetic testing is a complex of genetic and molecular cytogenetic examinations, which can help to detect abnormalities in embryos before transfer into the uterus of the mother. These specialized examinations are based on the latest findings in genetics and assisted reproduction. The preimplantation genetic testing is necessarily associated with a method of in vitro fertilization. It is performed on isolated blastomeres on the third day of embryo cultivation. Nowadays, it is preferred trophectoderm examination of cells from the five-day blastocysts. Generally speaking, after preimplantation genetic testing, we can select only embryos without genetic load to transfer into uterus. Preimplantation genetic testing is an important part of treatment of infertility. Complex diagnostics and treatment of infertile couples are increasingly influenced by the development and use of advanced genomic technologies. Further development and application of these modern methods require close cooperation between the field of assisted reproduction and clinical genetics.

Systems biology definition of the core proteome of metabolism and expression is consistent with high-throughput data.

Science.gov (United States)

Yang, Laurence; Tan, Justin; O'Brien, Edward J; Monk, Jonathan M; Kim, Donghyuk; Li, Howard J; Charusanti, Pep; Ebrahim, Ali; Lloyd, Colton J; Yurkovich, James T; Du, Bin; Dräger, Andreas; Thomas, Alex; Sun, Yuekai; Saunders, Michael A; Palsson, Bernhard O

2015-08-25

Finding the minimal set of gene functions needed to sustain life is of both fundamental and practical importance. Minimal gene lists have been proposed by using comparative genomics-based core proteome definitions. A definition of a core proteome that is supported by empirical data, is understood at the systems-level, and provides a basis for computing essential cell functions is lacking. Here, we use a systems biology-based genome-scale model of metabolism and expression to define a functional core proteome consisting of 356 gene products, accounting for 44% of the Escherichia coli proteome by mass based on proteomics data. This systems biology core proteome includes 212 genes not found in previous comparative genomics-based core proteome definitions, accounts for 65% of known essential genes in E. coli, and has 78% gene function overlap with minimal genomes (Buchnera aphidicola and Mycoplasma genitalium). Based on transcriptomics data across environmental and genetic backgrounds, the systems biology core proteome is significantly enriched in nondifferentially expressed genes and depleted in differentially expressed genes. Compared with the noncore, core gene expression levels are also similar across genetic backgrounds (two times higher Spearman rank correlation) and exhibit significantly more complex transcriptional and posttranscriptional regulatory features (40% more transcription start sites per gene, 22% longer 5'UTR). Thus, genome-scale systems biology approaches rigorously identify a functional core proteome needed to support growth. This framework, validated by using high-throughput datasets, facilitates a mechanistic understanding of systems-level core proteome function through in silico models; it de facto defines a paleome.

Application of medical cases in general genetics teaching in universities.

Science.gov (United States)

He, Zhumei; Bie, Linsai; Li, Wei

2018-01-20

General genetics is a core course in life sciences, medicine, agriculture and other related fields. As one of the most fast-developing disciplines of life sciences in the 21th century, the influence of the genetics knowledge on daily life is expanding, especially on human health and reproduction. In order to make it easier for students to understand the profound principles of genetics and to better apply the theories to daily life, we have introduced appropriate medical cases in general genetics teaching and further extended them combined with theoretical basis of genetics. This approach will be beneficial to enhance students' abilities of genetic analysis and promote their enthusiasm to learn and master practical skills. In this paper, we enumerate medical cases related to the modern genetics teaching system to provide a reference for genetics teaching in general and normal universities.

Young Adults' Belief in Genetic Determinism, and Knowledge and Attitudes towards Modern Genetics and Genomics: The PUGGS Questionnaire.

Science.gov (United States)

Carver, Rebecca Bruu; Castéra, Jérémy; Gericke, Niklas; Evangelista, Neima Alice Menezes; El-Hani, Charbel N

2017-01-01

In this paper we present the development and validation a comprehensive questionnaire to assess college students' knowledge about modern genetics and genomics, their belief in genetic determinism, and their attitudes towards applications of modern genetics and genomic-based technologies. Written in everyday language with minimal jargon, the Public Understanding and Attitudes towards Genetics and Genomics (PUGGS) questionnaire is intended for use in research on science education and public understanding of science, as a means to investigate relationships between knowledge, determinism and attitudes about modern genetics, which are to date little understood. We developed a set of core ideas and initial items from reviewing the scientific literature on genetics and previous studies on public and student knowledge and attitudes about genetics. Seventeen international experts from different fields (e.g., genetics, education, philosophy of science) reviewed the initial items and their feedback was used to revise the questionnaire. We validated the questionnaire in two pilot tests with samples of university freshmen students. The final questionnaire contains 45 items, including both multiple choice and Likert scale response formats. Cronbach alpha showed good reliability for each section of the questionnaire. In conclusion, the PUGGS questionnaire is a reliable tool for investigating public understanding and attitudes towards modern genetics and genomic-based technologies.

Young Adults’ Belief in Genetic Determinism, and Knowledge and Attitudes towards Modern Genetics and Genomics: The PUGGS Questionnaire

Science.gov (United States)

Carver, Rebecca Bruu; Castéra, Jérémy; Gericke, Niklas; Evangelista, Neima Alice Menezes

2017-01-01

In this paper we present the development and validation a comprehensive questionnaire to assess college students’ knowledge about modern genetics and genomics, their belief in genetic determinism, and their attitudes towards applications of modern genetics and genomic-based technologies. Written in everyday language with minimal jargon, the Public Understanding and Attitudes towards Genetics and Genomics (PUGGS) questionnaire is intended for use in research on science education and public understanding of science, as a means to investigate relationships between knowledge, determinism and attitudes about modern genetics, which are to date little understood. We developed a set of core ideas and initial items from reviewing the scientific literature on genetics and previous studies on public and student knowledge and attitudes about genetics. Seventeen international experts from different fields (e.g., genetics, education, philosophy of science) reviewed the initial items and their feedback was used to revise the questionnaire. We validated the questionnaire in two pilot tests with samples of university freshmen students. The final questionnaire contains 45 items, including both multiple choice and Likert scale response formats. Cronbach alpha showed good reliability for each section of the questionnaire. In conclusion, the PUGGS questionnaire is a reliable tool for investigating public understanding and attitudes towards modern genetics and genomic-based technologies. PMID:28114357

Automated Design and Optimization of Pebble-bed Reactor Cores

International Nuclear Information System (INIS)

Gougar, Hans D.; Ougouag, Abderrafi M.; Terry, William K.

2010-01-01

We present a conceptual design approach for high-temperature gas-cooled reactors using recirculating pebble-bed cores. The design approach employs PEBBED, a reactor physics code specifically designed to solve for and analyze the asymptotic burnup state of pebble-bed reactors, in conjunction with a genetic algorithm to obtain a core that maximizes a fitness value that is a function of user-specified parameters. The uniqueness of the asymptotic core state and the small number of independent parameters that define it suggest that core geometry and fuel cycle can be efficiently optimized toward a specified objective. PEBBED exploits a novel representation of the distribution of pebbles that enables efficient coupling of the burnup and neutron diffusion solvers. With this method, even complex pebble recirculation schemes can be expressed in terms of a few parameters that are amenable to modern optimization techniques. With PEBBED, the user chooses the type and range of core physics parameters that represent the design space. A set of traits, each with acceptable and preferred values expressed by a simple fitness function, is used to evaluate the candidate reactor cores. The stochastic search algorithm automatically drives the generation of core parameters toward the optimal core as defined by the user. The optimized design can then be modeled and analyzed in greater detail using higher resolution and more computationally demanding tools to confirm the desired characteristics. For this study, the design of pebble-bed high temperature reactor concepts subjected to demanding physical constraints demonstrated the efficacy of the PEBBED algorithm.

Genetic and non-genetic factors affecting morphometry of Sirohi goats

Science.gov (United States)

Dudhe, S. D.; Yadav, S. B. S.; Nagda, R. K.; Pannu, Urmila; Gahlot, G. C.

2015-01-01

Aim: The aim was to estimate genetic and non-genetic factors affecting morphometric traits of Sirohi goats under field condition. Materials and Methods: The detailed information of all animals on body measurements at birth, 3, 6, 9, and 12 months of age was collected from farmer’s flock under field condition born during 2007-2013 to analyze the effect of genetic and non-genetic factors. The least squares maximum likelihood program was used to estimate genetic and non-genetic parameters affecting morphometric traits. Results and Discussion: Effect of sire, cluster, year of birth, and sex was found to be highly significant (p<0.01) on all three morphometric traits, parity was highly significant (p<0.01) for body height (BH) and body girth (BG) at birth. The h2 estimates for morphometric traits ranged among 0.528±0.163 to 0.709±0.144 for BH, 0.408±0.159 to 0.605±0.192 for body length (BL), and 0.503±0.197 to 0.695±0.161 for BG. Conclusion: The effect of sire was highly significant (p<0.01) and also h² estimate of all morphometric traits were medium to high; therefore, it could be concluded on the basis of present findings that animals with higher body measurements at initial phases of growth will perform better with respect to even body weight traits at later stages of growth. PMID:27047043

[The practice and discussion of the physical knowledge stepping into genetics teaching].

Science.gov (United States)

Luo, Shen; Luo, Peigao

2014-09-01

Genetics, one of the core courses of biological field, play a key role in biology teaching and research. In fact, there exists high similarity between many genetic knowledge and physical knowledge. Due to strong abstract of genetic contents and the weak basis of genetics, some students lack of interests to study genetics. How to apply the strong physical knowledge which students had been learned in the middle school in genetics teaching is worthwhile for genetics teachers. In this paper, we would like to introduce an infiltrative teaching model on applying physical knowledge into genetic contents by establishing the intrinsic logistic relationship between physical knowledge and genetic knowledge. This teaching model could help students more deeply understand genetic knowledge and enhance students' self-studying ability as well as creating ability.

Genetic Disruption of the Core Circadian Clock Impairs Hippocampus-Dependent Memory

Science.gov (United States)

Wardlaw, Sarah M.; Phan, Trongha X.; Saraf, Amit; Chen, Xuanmao; Storm, Daniel R.

2014-01-01

Perturbing the circadian system by electrolytically lesioning the suprachiasmatic nucleus (SCN) or varying the environmental light:dark schedule impairs memory, suggesting that memory depends on the circadian system. We used a genetic approach to evaluate the role of the molecular clock in memory. Bmal1[superscript -/-] mice, which are arrhythmic…

Genetics of healthy aging in Europe: the EU-integrated project GEHA (GEnetics of Healthy Aging)

DEFF Research Database (Denmark)

Franceschi, Claudio; Bezrukov, Vladyslav; Blanché, Hélène

2007-01-01

The aim of the 5-year European Union (EU)-Integrated Project GEnetics of Healthy Aging (GEHA), constituted by 25 partners (24 from Europe plus the Beijing Genomics Institute from China), is to identify genes involved in healthy aging and longevity, which allow individuals to survive to advanced old......DNA). The genetic analysis will be performed by 9 high-throughput platforms, within the framework of centralized databases for phenotypic, genetic, and mtDNA data. Additional advanced approaches (bioinformatics, advanced statistics, mathematical modeling, functional genomics and proteomics, molecular biology...... age in good cognitive and physical function and in the absence of major age-related diseases. To achieve this aim a coherent, tightly integrated program of research that unites demographers, geriatricians, geneticists, genetic epidemiologists, molecular biologists, bioinfomaticians, and statisticians...

Swarm intelligence of artificial bees applied to In-Core Fuel Management Optimization

Energy Technology Data Exchange (ETDEWEB)

Santos de Oliveira, Iona Maghali, E-mail: ioliveira@con.ufrj.br [Nuclear Engineering Program, Federal University of Rio de Janeiro, P.O. Box 68509, Zip Code 21945-970, Rio de Janeiro, RJ (Brazil); Schirru, Roberto, E-mail: schirru@lmp.ufrj.br [Nuclear Engineering Program, Federal University of Rio de Janeiro, P.O. Box 68509, Zip Code 21945-970, Rio de Janeiro, RJ (Brazil)

2011-05-15

Research highlights: > We present Artificial Bee Colony with Random Keys (ABCRK) for In-Core Fuel Management Optimization. > Its performance is examined through the optimization of a Brazilian '2-loop' PWR. > Feasibility of using ABCRK is shown against some well known population-based algorithms. > Additional advantage includes the utilization of fewer control parameters. - Abstract: Artificial Bee Colony (ABC) algorithm is a relatively new member of swarm intelligence. ABC tries to simulate the intelligent behavior of real honey bees in food foraging and can be used for solving continuous optimization and multi-dimensional numeric problems. This paper introduces the Artificial Bee Colony with Random Keys (ABCRK), a modified ABC algorithm for solving combinatorial problems such as the In-Core Fuel Management Optimization (ICFMO). The ICFMO is a hard combinatorial optimization problem in Nuclear Engineering which during many years has been solved by expert knowledge. It aims at getting the best arrangement of fuel in the nuclear reactor core that leads to a maximization of the operating time. As a consequence, the operation cost decreases and money is saved. In this study, ABCRK is used for optimizing the ICFMO problem of a Brazilian '2-loop' Pressurized Water Reactor (PWR) Nuclear Power Plant (NPP) and the results obtained with the proposed algorithm are compared with those obtained by Genetic Algorithms (GA) and Particle Swarm Optimization (PSO). The results show that the performance of the ABCRK algorithm is better than or similar to that of other population-based algorithms, with the advantage of employing fewer control parameters.

Swarm intelligence of artificial bees applied to In-Core Fuel Management Optimization

International Nuclear Information System (INIS)

Santos de Oliveira, Iona Maghali; Schirru, Roberto

2011-01-01

Research highlights: → We present Artificial Bee Colony with Random Keys (ABCRK) for In-Core Fuel Management Optimization. → Its performance is examined through the optimization of a Brazilian '2-loop' PWR. → Feasibility of using ABCRK is shown against some well known population-based algorithms. → Additional advantage includes the utilization of fewer control parameters. - Abstract: Artificial Bee Colony (ABC) algorithm is a relatively new member of swarm intelligence. ABC tries to simulate the intelligent behavior of real honey bees in food foraging and can be used for solving continuous optimization and multi-dimensional numeric problems. This paper introduces the Artificial Bee Colony with Random Keys (ABCRK), a modified ABC algorithm for solving combinatorial problems such as the In-Core Fuel Management Optimization (ICFMO). The ICFMO is a hard combinatorial optimization problem in Nuclear Engineering which during many years has been solved by expert knowledge. It aims at getting the best arrangement of fuel in the nuclear reactor core that leads to a maximization of the operating time. As a consequence, the operation cost decreases and money is saved. In this study, ABCRK is used for optimizing the ICFMO problem of a Brazilian '2-loop' Pressurized Water Reactor (PWR) Nuclear Power Plant (NPP) and the results obtained with the proposed algorithm are compared with those obtained by Genetic Algorithms (GA) and Particle Swarm Optimization (PSO). The results show that the performance of the ABCRK algorithm is better than or similar to that of other population-based algorithms, with the advantage of employing fewer control parameters.

Population Genetic Structure of Glycyrrhiza inflata B. (Fabaceae) Is Shaped by Habitat Fragmentation, Water Resources and Biological Characteristics.

Science.gov (United States)

Yang, Lulu; Chen, Jianjun; Hu, Weiming; Yang, Tianshun; Zhang, Yanjun; Yukiyoshi, Tamura; Zhou, Yanyang; Wang, Ying

2016-01-01

Habitat fragmentation, water resources and biological characteristics are important factors that shape the genetic structure and geographical distribution of desert plants. Analysis of the relationships between these factors and population genetic variation should help to determine the evolutionary potential and conservation strategies for genetic resources for desert plant populations. As a traditional Chinese herb, Glycyrrhiza inflata B. (Fabaceae) is restricted to the fragmented desert habitat in China and has undergone a dramatic decline due to long-term over-excavation. Determining the genetic structure of the G. inflata population and identifying a core collection could help with the development of strategies to conserve this species. We investigated the genetic variation of 25 G. inflata populations based on microsatellite markers. A high level of population genetic divergence (FST = 0.257), population bottlenecks, reduced gene flow and moderate genetic variation (HE = 0.383) were detected. The genetic distances between the populations significantly correlated with the geographical distances, and this suggests that habitat fragmentation has driven a special genetic structure of G. inflata in China through isolation by distance. STRUCTURE analysis showed that G. inflata populations were structured into three clusters and that the populations belonged to multiple water systems, which suggests that water resources were related to the genetic structure of G. inflata. In addition, the biological characteristics of the perennial species G. inflata, such as its long-lived seeds, asexual reproduction, and oasis ecology, may be related to its resistance to habitat fragmentation. A core collection of G. inflata, that included 57 accessions was further identified, which captured the main allelic diversity of G. inflata. Recent habitat fragmentation has accelerated genetic divergence. The population genetic structure of G. inflata has been shaped by habitat

Identification of specific regions in hepatitis C virus core, NS2 and NS5A that genetically interact with p7 and co-ordinate infectious virus production.

Science.gov (United States)

Gouklani, H; Beyer, C; Drummer, H; Gowans, E J; Netter, H J; Haqshenas, G

2013-04-01

The p7 protein of hepatitis C virus (HCV) is a small, integral membrane protein that plays a critical role in virus replication. Recently, we reported two intergenotypic JFH1 chimeric viruses encoding the partial or full-length p7 protein of the HCV-A strain of genotype 1b (GT1b; Virology; 2007; 360:134). In this study, we determined the consensus sequences of the entire polyprotein coding regions of the wild-type JFH1 and the revertant chimeric viruses and identified predominant amino acid substitutions in core (K74M), NS2 (T23N, H99P) and NS5A (D251G). Forward genetic analysis demonstrated that all single mutations restored the infectivity of the defective chimeric genomes suggesting that the infectious virus production involves the association of p7 with specific regions in core, NS2 and NS5A. In addition, it was demonstrated that the NS2 T23N facilitated the generation of infectious intergenotypic chimeric virus encoding p7 from GT6 of HCV. © 2012 Blackwell Publishing Ltd.

Comparative Genomic Analysis of Meningitis- and Bacteremia-Causing Pneumococci Identifies a Common Core Genome

Science.gov (United States)

Cornick, Jennifer E.; Chaguza, Chrispin; Yalcin, Feyruz; Harris, Simon R.; Gray, Katherine J.; Kiran, Anmol M.; Molyneux, Elizabeth; French, Neil; Faragher, Brian E.; Everett, Dean B.; Bentley, Stephen D.

2015-01-01

Streptococcus pneumoniae is a nasopharyngeal commensal that occasionally invades normally sterile sites to cause bloodstream infection and meningitis. Although the pneumococcal population structure and evolutionary genetics are well defined, it is not clear whether pneumococci that cause meningitis are genetically distinct from those that do not. Here, we used whole-genome sequencing of 140 isolates of S. pneumoniae recovered from bloodstream infection (n = 70) and meningitis (n = 70) to compare their genetic contents. By fitting a double-exponential decaying-function model, we show that these isolates share a core of 1,427 genes (95% confidence interval [CI], 1,425 to 1,435 genes) and that there is no difference in the core genome or accessory gene content from these disease manifestations. Gene presence/absence alone therefore does not explain the virulence behavior of pneumococci that reach the meninges. Our analysis, however, supports the requirement of a range of previously described virulence factors and vaccine candidates for both meningitis- and bacteremia-causing pneumococci. This high-resolution view suggests that, despite considerable competency for genetic exchange, all pneumococci are under considerable pressure to retain key components advantageous for colonization and transmission and that these components are essential for access to and survival in sterile sites. PMID:26259813

Genetic algorithms for protein threading.

Science.gov (United States)

Yadgari, J; Amir, A; Unger, R

1998-01-01

Despite many years of efforts, a direct prediction of protein structure from sequence is still not possible. As a result, in the last few years researchers have started to address the "inverse folding problem": Identifying and aligning a sequence to the fold with which it is most compatible, a process known as "threading". In two meetings in which protein folding predictions were objectively evaluated, it became clear that threading as a concept promises a real breakthrough, but that much improvement is still needed in the technique itself. Threading is a NP-hard problem, and thus no general polynomial solution can be expected. Still a practical approach with demonstrated ability to find optimal solutions in many cases, and acceptable solutions in other cases, is needed. We applied the technique of Genetic Algorithms in order to significantly improve the ability of threading algorithms to find the optimal alignment of a sequence to a structure, i.e. the alignment with the minimum free energy. A major progress reported here is the design of a representation of the threading alignment as a string of fixed length. With this representation validation of alignments and genetic operators are effectively implemented. Appropriate data structure and parameters have been selected. It is shown that Genetic Algorithm threading is effective and is able to find the optimal alignment in a few test cases. Furthermore, the described algorithm is shown to perform well even without pre-definition of core elements. Existing threading methods are dependent on such constraints to make their calculations feasible. But the concept of core elements is inherently arbitrary and should be avoided if possible. While a rigorous proof is hard to submit yet an, we present indications that indeed Genetic Algorithm threading is capable of finding consistently good solutions of full alignments in search spaces of size up to 10(70).

Linear Mixed Models in Statistical Genetics

NARCIS (Netherlands)

R. de Vlaming (Ronald)

2017-01-01

markdownabstractOne of the goals of statistical genetics is to elucidate the genetic architecture of phenotypes (i.e., observable individual characteristics) that are affected by many genetic variants (e.g., single-nucleotide polymorphisms; SNPs). A particular aim is to identify specific SNPs that

Engineering fuel reloading sequence optimization for in-core shuffling system

International Nuclear Information System (INIS)

Jeong, Seo G.; Suh, Kune Y.

2008-01-01

Optimizing the nuclear fuel reloading process is central to enhancing the economics of nuclear power plant (NPP). There are two kinds of reloading method: in-core shuffling and ex-core shuffling. In-core shuffling has an advantage of reloading time when compared with ex-core shuffling. It is, however, not easy to adopt an in-core shuffling because of additional facilities required and regulations involved at the moment. The in-core shuffling necessitates minimizing the movement of refueling machine because reloading paths can be varied according to differing reloading sequences. In the past, the reloading process depended on the expert's knowledge and experience. Recent advances in computer technology have apparently facilitated the heuristic approach to nuclear fuel reloading sequence optimization. This work presents a first in its kind of in-core shuffling whereas all the Korean NPPs have so far adopted ex-core shuffling method. Several plants recently applied the in-core shuffling strategy, thereby saving approximately 24 to 48 hours of outage time. In case of in-core shuffling one need minimize the movement of refueling machine because reloading path can be varied according to different reloading sequences. Advances in computer technology have enabled optimizing the in-core shuffling by solving a traveling salesman problem. To solve this problem, heuristic algorithm is used, such as ant colony algorithm and genetic algorithm. The Systemic Engineering Reload Analysis (SERA) program is written to optimize shuffling sequence based on heuristic algorithms. SERA is applied to the Optimized Power Reactor 1000 MWe (OPR1000) on the assumption that the NPP adopts the in-core shuffling in the foreseeable future. It is shown that the optimized shuffling sequence resulted in reduced reloading time. (author)

Studies on WWER core diagnostics

International Nuclear Information System (INIS)

Lunin, G.L.; Mitin, V.I.; Bulavin, V.V.

1987-01-01

The reliability and safety of nuclear power plants have decisive meaning under the situation that nuclear power generation steadily increases, and among various measures aiming at ensuring the reliability and safety in the operation of nuclear power plants, the countermeasures for protecting reactor core, main process equipment and high pressure circuits from damage have the important role, and the monitoring of condition and the organization of forecast, which are carried out continuously or periodically during the operation of nuclear power stations using the diagnostic expert system specially developed for the purpose, are included in them. Such monitoring enables the early detection of mechanical damage, increase of vibration, defects caused during operation and so on in reactor cores and primary and secondary circuits, and the continuous watching of defect developments. Also boiling in a core is detected, the place of abnormality occurrence is identified, and the intensity and characteristics of boiling are determined, thus the occurrence of dangerous condition is prevented. The developments of an in-core monitoring system and noise diagnostic systems are reported. (Kako, I.)

The core proteome and pan proteome of Salmonella Paratyphi A epidemic strains.

Directory of Open Access Journals (Sweden)

Li Zhang

Full Text Available Comparative proteomics of the multiple strains within the same species can reveal the genetic variation and relationships among strains without the need to assess the genomic data. Similar to comparative genomics, core proteome and pan proteome can also be obtained within multiple strains under the same culture conditions. In this study we present the core proteome and pan proteome of four epidemic Salmonella Paratyphi A strains cultured under laboratory culture conditions. The proteomic information was obtained using a Two-dimensional gel electrophoresis (2-DE technique. The expression profiles of these strains were conservative, similar to the monomorphic genome of S. Paratyphi A. Few strain-specific proteins were found in these strains. Interestingly, non-core proteins were found in similar categories as core proteins. However, significant fluctuations in the abundance of some core proteins were also observed, suggesting that there is elaborate regulation of core proteins in the different strains even when they are cultured in the same environment. Therefore, core proteome and pan proteome analysis of the multiple strains can demonstrate the core pathways of metabolism of the species under specific culture conditions, and further the specific responses and adaptations of the strains to the growth environment.

Advanced Core Design And Fuel Management For Pebble-Bed Reactors

Energy Technology Data Exchange (ETDEWEB)

Hans D. Gougar; Abderrafi M. Ougouag; William K. Terry

2004-10-01

A method for designing and optimizing recirculating pebble-bed reactor cores is presented. At the heart of the method is a new reactor physics computer code, PEBBED, which accurately and efficiently computes the neutronic and material properties of the asymptotic (equilibrium) fuel cycle. This core state is shown to be unique for a given core geometry, power level, discharge burnup, and fuel circulation policy. Fuel circulation in the pebble-bed can be described in terms of a few well?defined parameters and expressed as a recirculation matrix. The implementation of a few heat?transfer relations suitable for high-temperature gas-cooled reactors allows for the rapid estimation of thermal properties critical for safe operation. Thus, modeling and design optimization of a given pebble-bed core can be performed quickly and efficiently via the manipulation of a limited number key parameters. Automation of the optimization process is achieved by manipulation of these parameters using a genetic algorithm. The end result is an economical, passively safe, proliferation-resistant nuclear power plant.

[The discussion of the infiltrative model of mathematical knowledge to genetics teaching].

Science.gov (United States)

Liu, Jun; Luo, Pei-Gao

2011-11-01

Genetics, the core course of biological field, is an importance major-basic course in curriculum of many majors related with biology. Due to strong theoretical and practical as well as abstract of genetics, it is too difficult to study on genetics for many students. At the same time, mathematics is one of the basic courses in curriculum of the major related natural science, which has close relationship with the establishment, development and modification of genetics. In this paper, to establish the intrinsic logistic relationship and construct the integral knowledge network and to help students improving the analytic, comprehensive and logistic abilities, we applied some mathematical infiltrative model genetic knowledge in genetics teaching, which could help students more deeply learn and understand genetic knowledge.

Genetics educational needs in China: physicians' experience and knowledge of genetic testing.

Science.gov (United States)

Li, Jing; Xu, Tengda; Yashar, Beverly M

2015-09-01

The aims of this study were to explore the relationship between physicians' knowledge and utilization of genetic testing and to explore genetics educational needs in China. An anonymous survey about experience, attitudes, and knowledge of genetic testing was conducted among physicians affiliated with Peking Union Medical College Hospital during their annual health evaluation. A personal genetics knowledge score was developed and predictors of personal genetics knowledge score were evaluated. Sixty-four physicians (33% male) completed the survey. Fifty-eight percent of them had used genetic testing in their clinical practice. Using a 4-point scale, mean knowledge scores of six common genetic testing techniques ranged from 1.7 ± 0.9 to 2.4 ± 1.0, and the average personal genetics knowledge score was 2.1 ± 0.8. In regression analysis, significant predictors of higher personal genetics knowledge score were ordering of genetic testing, utilization of pedigrees, higher medical degree, and recent genetics training (P education. This study demonstrated a sizable gap between Chinese physicians' knowledge and utilization of genetic testing. Participants had high self-perceived genetics educational needs. Development of genetics educational platforms is both warranted and desired in China.Genet Med 17 9, 757-760.

Microprocessor-based integrated LMFBR core surveillance

International Nuclear Information System (INIS)

Gmeiner, L.

1984-06-01

This report results from a joint study of KfK and INTERATOM. The aim of this study is to explore the advantages of microprocessors and microelectronics for a more sophisticated core surveillance, which is based on the integration of separate surveillance techniques. Due to new developments in microelectronics and related software an approach to LMFBR core surveillance can be conceived that combines a number of measurements into a more intelligent decision-making data processing system. The following techniques are considered to contribute essentially to an integrated core surveillance system: - subassembly state and thermal hydraulics performance monitoring, - temperature noise analysis, - acoustic core surveillance, - failure characterization and failure prediction based on DND- and cover gas signals, and - flux tilting techniques. Starting from a description of these techniques it is shown that by combination and correlation of these individual techniques a higher degree of cost-effectiveness, reliability and accuracy can be achieved. (orig./GL) [de

Core optimization studies for a small heating reactor

International Nuclear Information System (INIS)

Galperin, A.

1986-11-01

Small heating reactor cores are characterized by a high contribution of the leakage to the neutron balance and by a large power density variation in the axial direction. A limited number of positions is available for the control rods, which are necessary to satisfy overall reactivity requirements subject to a safety related constraint on the maximum worth of each rod. Design approaches aimed to improve safety and fuel utilization performance of the core include separation of the cooling and moderating functions of the water with the core in order to reduce hot-to-cold reactivity shift and judicious application of the axial Gd zoning aimed to improve the discharge burnup distribution. Several design options are analyzed indicating a satisfactory solution of the axial burnup distribution problem. The feasibility of the control rod system including zircaloy, stainless steel, natural boron and possibly enriched boron rods is demonstrated. A preliminary analysis indicates directions for further improvements of the core performance by an additional reduction of the hot-to-cold reactivity shift and by a reduction of the depletion reactivity swing adopting a higher gadolinium concentration in the fuel or a two-batch fuel management scheme. (author)

Bio-fortification potential of global wild annual lentil core collection.

Directory of Open Access Journals (Sweden)

Sandeep Kumar

Full Text Available Lentil, generally known as poor man's' meat due to its high protein value is also a good source of dietary fiber, antioxidants and vitamins along with fast cooking characteristics. It could be used globally as a staple food crop to eradicate hidden hunger, if this nutritionally rich crop is further enriched with essential minerals. This requires identification of essential mineral rich germplasm. So, in the present study, a core set of 96 wild accessions extracted from 405 global wild annual collections comprising different species was analyzed to determine its bio-fortification potential. Impressive variation (mg/100 g was observed for different minerals including Na (30-318, K (138.29-1578, P (37.50-593.75, Ca (4.74-188.75, Mg (15-159, Fe (2.82-14.12, Zn (1.29-12.62, Cu (0.5-7.12, Mn (1.22-9.99, Mo (1.02-11.89, Ni (0.16-3.49, Pb (0.01-0.58, Cd (0-0.03, Co (0-0.63 and As (0-0.02. Hierarchical clustering revealed high intra- and inter-specific variability. Further, correlation study showed positive significant association among minerals and between minerals including agro-morphological traits. Accessions representation from Turkey and Syria had maximum variability for different minerals. Diversity analysis exhibited wide geographical variations across gene-pool in core set. Potential use of the identified trait-specific genetic resources could be initial genetic material, for genetic base broadening and biofortification of cultivated lentil.

F.B.R. Core mock-up RAPSODIE - II - numerical models

International Nuclear Information System (INIS)

Brochard, D.; Hammami, L.; Gantenbein, F.

1990-01-01

To study the behaviour of LMFBR cores excited by a seism, tests have been performed on the RAPSODIE core mock-up. The aim of this paper is to present the numerical models used to interprete these tests and the comparisons between calculations and experimental results

Comparison of computational performance of GA and PSO optimization techniques when designing similar systems - Typical PWR core case

International Nuclear Information System (INIS)

Souza Lima, Carlos A.; Lapa, Celso Marcelo F.; Pereira, Claudio Marcio do N.A.; Cunha, Joao J. da; Alvim, Antonio Carlos M.

2011-01-01

Research highlights: → Performance of PSO and GA techniques applied to similar system design. → This work uses ANGRA1 (two loop PWR) core as a prototype. → Results indicate that PSO technique is more adequate than GA to solve this kind of problem. - Abstract: This paper compares the performance of two optimization techniques, particle swarm optimization (PSO) and genetic algorithm (GA) applied to the design a typical reduced scale two loop Pressurized Water Reactor (PWR) core, at full power in single phase forced circulation flow. This comparison aims at analyzing the performance in reaching the global optimum, considering that both heuristics are based on population search methods, that is, methods whose population (candidate solution set) evolve from one generation to the next using a combination of deterministic and probabilistic rules. The simulated PWR, similar to ANGRA 1 power plant, was used as a case example to compare the performance of PSO and GA. Results from simulations indicated that PSO is more adequate to solve this kind of problem.

Adolescents' non-core food intake: a description of what, where and with whom adolescents consume non-core foods.

Science.gov (United States)

Toumpakari, Zoi; Haase, Anne M; Johnson, Laura

2016-06-01

Little is known about adolescents' non-core food intake in the UK and the eating context in which they consume non-core foods. The present study aimed to describe types of non-core foods consumed by British adolescents in total and across different eating contexts. A descriptive analysis, using cross-sectional data from food diaries. Non-core foods were classified based on cut-off points of fat and sugar from the Australian Guide to Healthy Eating. Eating context was defined as 'where' and 'with whom' adolescents consumed each food. Percentages of non-core energy were calculated for each food group in total and across eating contexts. A combined ranking was then created to account for each food's contribution to non-core energy intake and its popularity of consumption (percentage of consumers). The UK National Diet and Nutrition Survey 2008-2011. Adolescents across the UK aged 11-18 years (n 666). Non-core food comprised 39·5 % of total energy intake and was mostly 'Regular soft drinks', 'Crisps & savoury snacks', 'Chips & potato products', 'Chocolate' and 'Biscuits'. Adolescents ate 57·0 % and 51·3 % of non-core food at 'Eateries' or with 'Friends', compared with 33·2 % and 32·1 % at 'Home' or with 'Parents'. Persistent foods consumed across eating contexts were 'Regular soft drinks' and 'Chips & potato products'. Regular soft drinks contribute the most energy and are the most popular non-core food consumed by adolescents regardless of context, and represent a good target for interventions to reduce non-core food consumption.

Nanostructured core-shell electrode materials for electrochemical capacitors

Science.gov (United States)

Jiang, Long-bo; Yuan, Xing-zhong; Liang, Jie; Zhang, Jin; Wang, Hou; Zeng, Guang-ming

2016-11-01

Core-shell nanostructure represents a unique system for applications in electrochemical energy storage devices. Owing to the unique characteristics featuring high power delivery and long-term cycling stability, electrochemical capacitors (ECs) have emerged as one of the most attractive electrochemical storage systems since they can complement or even replace batteries in the energy storage field, especially when high power delivery or uptake is needed. This review aims to summarize recent progress on core-shell nanostructures for advanced supercapacitor applications in view of their hierarchical architecture which not only create the desired hierarchical porous channels, but also possess higher electrical conductivity and better structural mechanical stability. The core-shell nanostructures include carbon/carbon, carbon/metal oxide, carbon/conducting polymer, metal oxide/metal oxide, metal oxide/conducting polymer, conducting polymer/conducting polymer, and even more complex ternary core-shell nanoparticles. The preparation strategies, electrochemical performances, and structural stabilities of core-shell materials for ECs are summarized. The relationship between core-shell nanostructure and electrochemical performance is discussed in detail. In addition, the challenges and new trends in core-shell nanomaterials development have also been proposed.

Plutonium cores of zenith

Energy Technology Data Exchange (ETDEWEB)

Barclay, F R; Cameron, I R; Drageset, A; Freemantle, R G; Wilson, D J

1965-03-15

The report describes a series of experiments carried out with plutonium fuel in the heated zero power reactor ZENITH, with the aim of testing current theoretical methods, with particular reference to excess reactivity, temperature coefficients, differential spectrum and reaction rate distributions. Two cores of widely different fissile/moderator atom ratios were loaded in order to test the theory under significantly varied spectrum conditions.

Hepatitis B Virus Infection, Genetic Susceptibility and Hepatocellular Carcinoma

Directory of Open Access Journals (Sweden)

Juan Wen

2015-12-01

Full Text Available Liver cancer is a sever cancer burden in the world, especially in developing countries. Its late diagnosis and high mortality rate urges early prediction. Hepatocellular carcinoma (HCC is the major histopathological type of liver cancer. Chronic infection with hepatitis B virus (HBV is a well-established risk factor for HCC. On one side, HBV sequence variation may influence the outcome of HBV infection and the development of HCC. At least ten HBV genotypes (A to J are identified. Several HBV genotypes and mutations in pre-S and pre-core/core promoter regions are closely associated with HCC pathogenesis, and have been regarded as biomarkers to predict the occurrence of HCC. On the other side, only a small fraction of chronic hepatitis B patients developed HCC, and some HCC cases were diagnosed with no known predisposing risk factors, suggesting host genetic variations may also play important roles in the carcinogenesis. In this review, we summarized current findings of HBV genotypes and mutations, host genetic variations and their interactions involved in HCC carcinogenesis. Understanding the key viral and host genetic variations is essential for generating effective predictive biomarkers for HCC development.

Charcot-Marie-Tooth disease: frequency of genetic subtypes and guidelines for genetic testing.

LENUS (Irish Health Repository)

Murphy, Sinead M

2012-07-01

Charcot-Marie-Tooth disease (CMT) is a clinically and genetically heterogeneous group of diseases with approximately 45 different causative genes described. The aims of this study were to determine the frequency of different genes in a large cohort of patients with CMT and devise guidelines for genetic testing in practice.

Heterogeneity in autism spectrum disorder: clarifying core- and co-occurring characteristics, correlates and course

NARCIS (Netherlands)

M.L.J.M. Eussen (Mart)

2015-01-01

markdownabstractThe first aim of this thesis is to gain more insight in the phenotypical variance of core and eo-occurring symptoms of ASD. The specific research questions concerning this first aim are: 1. Do symptom profiles on core ASD symptoms support a categorical view with different

Breast cancer: determining the genetic profile from ultrasound-guided percutaneous biopsy specimens obtained during the diagnostic workups.

Science.gov (United States)

López Ruiz, J A; Zabalza Estévez, I; Mieza Arana, J A

2016-01-01

To evaluate the possibility of determining the genetic profile of primary malignant tumors of the breast from specimens obtained by ultrasound-guided percutaneous biopsies during the diagnostic imaging workup. This is a retrospective study in 13 consecutive patients diagnosed with invasive breast cancer by B-mode ultrasound-guided 12 G core needle biopsy. After clinical indication, the pathologist decided whether the paraffin block specimens seemed suitable (on the basis of tumor size, validity of the sample, and percentage of tumor cells) before sending them for genetic analysis with the MammaPrint® platform. The size of the tumors on ultrasound ranged from 0.6cm to 5cm. In 11 patients the preserved specimen was considered valid and suitable for use in determining the genetic profile. In 1 patient (with a 1cm tumor) the pathologist decided that it was necessary to repeat the core biopsy to obtain additional samples. In 1 patient (with a 5cm tumor) the specimen was not considered valid by the genetic laboratory. The percentage of tumor cells in the samples ranged from 60% to 70%. In 11/13 cases (84.62%) it was possible to do the genetic analysis on the previously diagnosed samples. In most cases, regardless of tumor size, it is possible to obtain the genetic profile from tissue specimens obtained with ultrasound-guided 12 G core biopsy preserved in paraffin blocks. Copyright © 2015 SERAM. Published by Elsevier España, S.L.U. All rights reserved.

A Belated Green Revolution for Cannabis: Virtual Genetic Resources to Fast-Track Cultivar Development.

Science.gov (United States)

Welling, Matthew T; Shapter, Tim; Rose, Terry J; Liu, Lei; Stanger, Rhia; King, Graham J

2016-01-01

Cannabis is a predominantly diecious phenotypically diverse domesticated genus with few if any extant natural populations. International narcotics conventions and associated legislation have constrained the establishment, characterization, and use of Cannabis genetic resource collections. This has resulted in the underutilization of genepool variability in cultivar development and has limited the inclusion of secondary genepools associated with genetic improvement strategies of the Green Revolution. The structured screening of ex situ germplasm and the exploitation of locally-adapted intraspecific traits is expected to facilitate the genetic improvement of Cannabis. However, limited attempts have been made to establish the full extent of genetic resources available for pre-breeding. We present a thorough critical review of Cannabis ex situ genetic resources, and discuss recommendations for conservation, pre-breeding characterization, and genetic analysis that will underpin future cultivar development. We consider East Asian germplasm to be a priority for conservation based on the prolonged historical cultivation of Cannabis in this region over a range of latitudes, along with the apparent high levels of genetic diversity and relatively low representation in published genetic resource collections. Seed cryopreservation could improve conservation by reducing hybridization and genetic drift that may occur during Cannabis germplasm regeneration. Given the unique legal status of Cannabis, we propose the establishment of a global virtual core collection based on the collation of consistent and comprehensive provenance meta-data and the adoption of high-throughput DNA sequencing technologies. This would enable representative core collections to be used for systematic phenotyping, and so underpin breeding strategies for the genetic improvement of Cannabis.

Genome-wide resequencing of KRICE_CORE reveals their potential for future breeding, as well as functional and evolutionary studies in the post-genomic era.

Science.gov (United States)

Kim, Tae-Sung; He, Qiang; Kim, Kyu-Won; Yoon, Min-Young; Ra, Won-Hee; Li, Feng Peng; Tong, Wei; Yu, Jie; Oo, Win Htet; Choi, Buung; Heo, Eun-Beom; Yun, Byoung-Kook; Kwon, Soon-Jae; Kwon, Soon-Wook; Cho, Yoo-Hyun; Lee, Chang-Yong; Park, Beom-Seok; Park, Yong-Jin

2016-05-26

Rice germplasm collections continue to grow in number and size around the world. Since maintaining and screening such massive resources remains challenging, it is important to establish practical methods to manage them. A core collection, by definition, refers to a subset of the entire population that preserves the majority of genetic diversity, enhancing the efficiency of germplasm utilization. Here, we report whole-genome resequencing of the 137 rice mini core collection or Korean rice core set (KRICE_CORE) that represents 25,604 rice germplasms deposited in the Korean genebank of the Rural Development Administration (RDA). We implemented the Illumina HiSeq 2000 and 2500 platform to produce short reads and then assembled those with 9.8 depths using Nipponbare as a reference. Comparisons of the sequences with the reference genome yielded more than 15 million (M) single nucleotide polymorphisms (SNPs) and 1.3 M INDELs. Phylogenetic and population analyses using 2,046,529 high-quality SNPs successfully assigned rice accessions to the relevant rice subgroups, suggesting that these SNPs capture evolutionary signatures that have accumulated in rice subpopulations. Furthermore, genome-wide association studies (GWAS) for four exemplary agronomic traits in the KRIC_CORE manifest the utility of KRICE_CORE; that is, identifying previously defined genes or novel genetic factors that potentially regulate important phenotypes. This study provides strong evidence that the size of KRICE_CORE is small but contains high genetic and functional diversity across the genome. Thus, our resequencing results will be useful for future breeding, as well as functional and evolutionary studies, in the post-genomic era.

The Great Deluge Algorithm applied to a nuclear reactor core design optimization problem

International Nuclear Information System (INIS)

Sacco, Wagner F.; Oliveira, Cassiano R.E. de

2005-01-01

The Great Deluge Algorithm (GDA) is a local search algorithm introduced by Dueck. It is an analogy with a flood: the 'water level' rises continuously and the proposed solution must lie above the 'surface' in order to survive. The crucial parameter is the 'rain speed', which controls convergence of the algorithm similarly to Simulated Annealing's annealing schedule. This algorithm is applied to the reactor core design optimization problem, which consists in adjusting several reactor cell parameters, such as dimensions, enrichment and materials, in order to minimize the average peak-factor in a 3-enrichment-zone reactor, considering restrictions on the average thermal flux, criticality and sub-moderation. This problem was previously attacked by the canonical genetic algorithm (GA) and by a Niching Genetic Algorithm (NGA). NGAs were designed to force the genetic algorithm to maintain a heterogeneous population throughout the evolutionary process, avoiding the phenomenon known as genetic drift, where all the individuals converge to a single solution. The results obtained by the Great Deluge Algorithm are compared to those obtained by both algorithms mentioned above. The three algorithms are submitted to the same computational effort and GDA reaches the best results, showing its potential for other applications in the nuclear engineering field as, for instance, the nuclear core reload optimization problem. One of the great advantages of this algorithm over the GA is that it does not require special operators for discrete optimization. (author)

Program for accident and incident management support, AIMS

International Nuclear Information System (INIS)

Putra, M.A.

1993-12-01

A prototype of an advisory computer program is presented which could be used in monitoring and analyzing an ongoing incident in a nuclear power plant. The advisory computer program, called the Accident and Incident Management Support (AIMS), focuses on processing a set of data that is to be transmitted from a nuclear power plant to a national or regional emergency center during an incident. The AIMS program will assess the reactor conditions by processing the measured plant parameters. The applied model of the power plant contains a level of complexity that is comparable with the simplified plant model that the power plant operator uses. A standardized decay heat function and a steam water property library is used in the integral balance equations for mass and energy. A simulation of the station blackout accident of the Borssele plant is used to test the program. The program predicts successively: (1) the time of dryout of the steam generators, (2) the time of saturation of the primary system, and (3) the onset of core uncovery. The coolant system with the actual water levels will be displayed on the screen. (orig./HP)

A Genetic Epidemiological Study of Behavioral Traits

NARCIS (Netherlands)

N. Amin (Najaf)

2011-01-01

textabstractHuman behavioural genetics aims to unravel the genetic and environmental contributions to variations in human behaviour. Behaviour is a complex trait, involving multiple genes that are affected by a variety of other factors. Genetic epidemiological research of behaviour goes back to

Journal of Genetics | Indian Academy of Sciences

Indian Academy of Sciences (India)

population stratification; ancestry informative markers (AIMs); race; ethnicity; genetic epidemiology; forensic genetics; Hispanics. ... Department of Microbiology, Mount Sinai School of Medicine, New York, NY 10029, USA; Department of Genetics and Genomic Sciences, Mount Sinai School of Medicine, New York, NY 10029 ...

Fuel and core design study of the sodium-cooled fast reactors. Studies on metallic fuel cores in the JFY2002

International Nuclear Information System (INIS)

Sugino, Kazuteru; Mizuno, Tomoyasu

2003-06-01

Based on the results obtained in the former feasibility study, the metallic fueled core of ordinary-type, that is, 2-region homogeneous core, has been established aiming at the improvement in the core performance, and subsequent comparison has been performed with the mixed oxide fueled core. Further, the attractive concept of the metallic fueled core of high outlet temperature has been constructed which has good nuclear features as a metallic fueled core and has identical outlet temperature to mixed oxide fuelled core. Following items have been found as a result of the investigation on the ordinary-type core. The metallic fueled core whose maximum fast neutron fluence (En>0.1MeV) is set identical (5x10 23 n/cm 2 ) to the mixed oxide fueled cores with core discharge burnup 150GWd/t has sufficient core performances as a metallic fueled core, e.g. higher breeding ratio and longer operation period compared with mixed oxide fueled cores, but the core discharge burnup is limited up to 100GWd/t. However effective discharge burnup including the contribution of the blanket region is comparative to mixed oxide cores under the same breeding ratio condition. In order to enlarge the core discharge burnup to 150GWd/t keeping the core performance identical to above mentioned core's, the irradiation deformation of structural material should be reduced to that of mixed oxide fueled cores. Further the maximum fast neutron fluence reaches to 7-8x10 23 n/cm 2 (En>0.1MeV). The investigations on the core of high outlet temperature have clarified following items. Even in the change of core regions by pin-diameter form 3-region to 2-region and in the limited maximum fuel pin diameter 8.5 mm, realization of the identical outlet/inlet temperatures to the mixed oxide cores (550/395degC) is feasible under the criteria of the maximum temperature 650degC at the inner surface of the cladding. The constructed core accommodates the targets of breeding ratio from about 1.0 to 1.2 only by adjusting

Selection of core animals in the Algorithm for Proven and Young using a simulation model.

Science.gov (United States)

Bradford, H L; Pocrnić, I; Fragomeni, B O; Lourenco, D A L; Misztal, I

2017-12-01

The Algorithm for Proven and Young (APY) enables the implementation of single-step genomic BLUP (ssGBLUP) in large, genotyped populations by separating genotyped animals into core and non-core subsets and creating a computationally efficient inverse for the genomic relationship matrix (G). As APY became the choice for large-scale genomic evaluations in BLUP-based methods, a common question is how to choose the animals in the core subset. We compared several core definitions to answer this question. Simulations comprised a moderately heritable trait for 95,010 animals and 50,000 genotypes for animals across five generations. Genotypes consisted of 25,500 SNP distributed across 15 chromosomes. Genotyping errors and missing pedigree were also mimicked. Core animals were defined based on individual generations, equal representation across generations, and at random. For a sufficiently large core size, core definitions had the same accuracies and biases, even if the core animals had imperfect genotypes. When genotyped animals had unknown parents, accuracy and bias were significantly better (p ≤ .05) for random and across generation core definitions. © 2017 The Authors. Journal of Animal Breeding and Genetics Published by Blackwell Verlag GmbH.

Genetic disruption of the core circadian clock impairs hippocampus-dependent memory

OpenAIRE

2014-01-01

Perturbing the circadian system by electrolytically lesioning the suprachiasmatic nucleus (SCN) or varying the environmental light:dark schedule impairs memory, suggesting that memory depends on the circadian system. We used a genetic approach to evaluate the role of the molecular clock in memory. Bmal1−/− mice, which are arrhythmic under constant conditions, were examined for hippocampus-dependent memory, LTP at the Schaffer-collateral synapse, and signal transduction activity in the hippoca...

EEA core set of indicators. Guide

Energy Technology Data Exchange (ETDEWEB)

NONE

2005-07-01

This guide provides information on the quality of the 37 indicators in the EEA core set. Its primary role is to support improved implementation of the core set in the EEA, European topic centres and the European environment information and observation network (Eionet). In parallel, it is aimed at helping users outside the EEA/Eionet system make best use of the indicators in their own work. It is hoped that the guide will promote cooperation on improving indicator methodologies and data quality as part of the wider process to streamline and improve environmental reporting in the European Union and beyond. (au)

Molecular Population Genetics.

Science.gov (United States)

Casillas, Sònia; Barbadilla, Antonio

2017-03-01

Molecular population genetics aims to explain genetic variation and molecular evolution from population genetics principles. The field was born 50 years ago with the first measures of genetic variation in allozyme loci, continued with the nucleotide sequencing era, and is currently in the era of population genomics. During this period, molecular population genetics has been revolutionized by progress in data acquisition and theoretical developments. The conceptual elegance of the neutral theory of molecular evolution or the footprint carved by natural selection on the patterns of genetic variation are two examples of the vast number of inspiring findings of population genetics research. Since the inception of the field, Drosophila has been the prominent model species: molecular variation in populations was first described in Drosophila and most of the population genetics hypotheses were tested in Drosophila species. In this review, we describe the main concepts, methods, and landmarks of molecular population genetics, using the Drosophila model as a reference. We describe the different genetic data sets made available by advances in molecular technologies, and the theoretical developments fostered by these data. Finally, we review the results and new insights provided by the population genomics approach, and conclude by enumerating challenges and new lines of inquiry posed by increasingly large population scale sequence data. Copyright © 2017 Casillas and Barbadilla.

Genetic algorithms applied to nuclear reactor design optimization

International Nuclear Information System (INIS)

Pereira, C.M.N.A.; Schirru, R.; Martinez, A.S.

2000-01-01

A genetic algorithm is a powerful search technique that simulates natural evolution in order to fit a population of computational structures to the solution of an optimization problem. This technique presents several advantages over classical ones such as linear programming based techniques, often used in nuclear engineering optimization problems. However, genetic algorithms demand some extra computational cost. Nowadays, due to the fast computers available, the use of genetic algorithms has increased and its practical application has become a reality. In nuclear engineering there are many difficult optimization problems related to nuclear reactor design. Genetic algorithm is a suitable technique to face such kind of problems. This chapter presents applications of genetic algorithms for nuclear reactor core design optimization. A genetic algorithm has been designed to optimize the nuclear reactor cell parameters, such as array pitch, isotopic enrichment, dimensions and cells materials. Some advantages of this genetic algorithm implementation over a classical method based on linear programming are revealed through the application of both techniques to a simple optimization problem. In order to emphasize the suitability of genetic algorithms for design optimization, the technique was successfully applied to a more complex problem, where the classical method is not suitable. Results and comments about the applications are also presented. (orig.)

The genetic difference principle.

Science.gov (United States)

Farrelly, Colin

2004-01-01

In the newly emerging debates about genetics and justice three distinct principles have begun to emerge concerning what the distributive aim of genetic interventions should be. These principles are: genetic equality, a genetic decent minimum, and the genetic difference principle. In this paper, I examine the rationale of each of these principles and argue that genetic equality and a genetic decent minimum are ill-equipped to tackle what I call the currency problem and the problem of weight. The genetic difference principle is the most promising of the three principles and I develop this principle so that it takes seriously the concerns of just health care and distributive justice in general. Given the strains on public funds for other important social programmes, the costs of pursuing genetic interventions and the nature of genetic interventions, I conclude that a more lax interpretation of the genetic difference principle is appropriate. This interpretation stipulates that genetic inequalities should be arranged so that they are to the greatest reasonable benefit of the least advantaged. Such a proposal is consistent with prioritarianism and provides some practical guidance for non-ideal societies--that is, societies that do not have the endless amount of resources needed to satisfy every requirement of justice.

A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa

NARCIS (Netherlands)

Choi, H.K.; Kim, D.; Uhm, T.; Limpens, E.H.M.; Lim, H.; Mun, J.H.; Kalo, P.; Penmetsa, R.V.; Seres, A.; Kulikova, O.; Roe, B.A.; Bisseling, T.; Kiss, G.B.; Cook, D.R.

2004-01-01

A core genetic map of the legume Medicago truncatula has been established by analyzing the segregation of 288 sequence-characterized genetic markers in an E, population composed of 93 individuals. These molecular markers correspond to 141 ESTs, 80 BAC end sequence tags, and 67 resistance gene

The ties that bind: genetic relatedness predicts the fission and fusion of social groups in wild African elephants.

Science.gov (United States)

Archie, Elizabeth A; Moss, Cynthia J; Alberts, Susan C

2006-03-07

Many social animals live in stable groups. In contrast, African savannah elephants (Loxodonta africana) live in unusually fluid, fission-fusion societies. That is, 'core' social groups are composed of predictable sets of individuals; however, over the course of hours or days, these groups may temporarily divide and reunite, or they may fuse with other social groups to form much larger social units. Here, we test the hypothesis that genetic relatedness predicts patterns of group fission and fusion among wild, female African elephants. Our study of a single Kenyan population spans 236 individuals in 45 core social groups, genotyped at 11 microsatellite and one mitochondrial DNA (mtDNA) locus. We found that genetic relatedness predicted group fission; adult females remained with their first order maternal relatives when core groups fissioned temporarily. Relatedness also predicted temporary fusion between social groups; core groups were more likely to fuse with each other when the oldest females in each group were genetic relatives. Groups that shared mtDNA haplotypes were also significantly more likely to fuse than groups that did not share mtDNA. Our results suggest that associations between core social groups persist for decades after the original maternal kin have died. We discuss these results in the context of kin selection and its possible role in the evolution of elephant sociality.

Analysis Of Core Management For The Transition Cores Of RSG-GAS Reactor To Full-Silicide Core

International Nuclear Information System (INIS)

Malem Sembiring, Tagor; Suparlina, Lily; Tukiran

2001-01-01

The core conversion of RSG-GAS reactor from oxide to silicide core with meat density of 2.96 g U/cc is still doing. At the end of 2000, the reactor has been operated for 3 transition cores which is the mixed core of oxide-silicide. Based on previous work, the calculated core parameter for the cores were obtained and it is needed 10 transition cores to achieve a full-silicide core. The objective of this work is to acquire the effect of the increment of the number of silicide fuel on the core parameters such as excess reactivity and shutdown margin. The measurement of the core parameters was carried out using the method of compensation of couple control rods. The experiment shows that the excess reactivity trends lower with the increment of the number of silicide fuel in the core. However, the shutdown margin is not change with the increment of the number of silicide fuel. Therefore, the transition cores can be operated safety to a full-silicide core

Variabilidad genética de Moniliophthora perniciosa (Stahel Aime y Phillips-Mora, comb. nov. (Agaricales - Marasmiaceae en variedades de cacao (Theobroma cacao L. Genetic variability of Moniliophthora perniciosa (Stahel Aime & Phillips-Mora, comb. nov. (Agaricales - Marasmiaceae in varieties of cocoa (Theobroma cacao L.

Directory of Open Access Journals (Sweden)

Carolina Osorio-Solano

2012-04-01

Full Text Available Moniliophthora perniciosa, agente causante de la ‘escoba de bruja’ en cacao (Theobroma cacao, presenta una elevada variabilidad genética y discrepancias en su taxonomía y es una de las enfermedades más importantes en plantaciones cacaoteras que ocasiona pérdidas económicas a nivel mundial cercanas a 70%, y de 40% a nivel nacional. La caracterización de la diversidad genética de los biotipos es importante para la ejecución de proyectos encaminados al manejo de este patógeno y el desarrollo de materiales resistentes de cacao. En este estudio se analizaron 12 aislamientos del hongo obtenidos de diferentes materiales de cacao. Cada una de las muestras se evaluó con marcadores moleculares que tienen como blanco una región del ADN ribosomal (ADNr nuclear conocida como ITS (Internal Transcribed Spacer, una región intergénica (IGS-1 y cinco secuencias simples repetidas (SSR. El marcador IGS-1 permitió la determinación del biotipo C, no obstante se encontró una variabilidad genética evidente dentro de este biotipo, aún no registrada. El análisis de la diversidad genética de M. perniciosa por medio de marcadores microsatélite arrojó un valor total de 0.4260, una heterocigosidad total de 0.6143 y un índice de información polimórfica (PIC de 0.3407, valores considerados de rango medio a alto para los aislamientos estudiados y que estiman la variabilidad genética presente en M. perniciosa.Moniliophthora perniciosa, the founder agent of the ‘witch’s broom’ on cocoa (Theobroma cacao L. is one of the most important diseases in cocoa plantations, causing economic losses close to 70% worldwide and 40% nationwide. It shows a high genetic variability and discrepancies in its taxonomy. Characterization of the genetic diversity of biotypes is important for projects aimed towards the handling of this pathogen and the development of resistant cocoa materials. Twelve isolations of the fungus were analyzed in this study from different

Core-to-core uniformity improvement in multi-core fiber Bragg gratings

Science.gov (United States)

Lindley, Emma; Min, Seong-Sik; Leon-Saval, Sergio; Cvetojevic, Nick; Jovanovic, Nemanja; Bland-Hawthorn, Joss; Lawrence, Jon; Gris-Sanchez, Itandehui; Birks, Tim; Haynes, Roger; Haynes, Dionne

2014-07-01

Multi-core fiber Bragg gratings (MCFBGs) will be a valuable tool not only in communications but also various astronomical, sensing and industry applications. In this paper we address some of the technical challenges of fabricating effective multi-core gratings by simulating improvements to the writing method. These methods allow a system designed for inscribing single-core fibers to cope with MCFBG fabrication with only minor, passive changes to the writing process. Using a capillary tube that was polished on one side, the field entering the fiber was flattened which improved the coverage and uniformity of all cores.

The genetic validation of heterogeneity in schizophrenia.

Science.gov (United States)

Tsutsumi, Atsushi; Glatt, Stephen J; Kanazawa, Tetsufumi; Kawashige, Seiya; Uenishi, Hiroyuki; Hokyo, Akira; Kaneko, Takao; Moritani, Makiko; Kikuyama, Hiroki; Koh, Jun; Matsumura, Hitoshi; Yoneda, Hiroshi

2011-10-07

Schizophrenia is a heritable disorder, however clear genetic architecture has not been detected. To overcome this state of uncertainty, the SZGene database has been established by including all published case-control genetic association studies appearing in peer-reviewed journals. In the current study, we aimed to determine if genetic variants strongly suggested by SZGene are associated with risk of schizophrenia in our case-control samples of Japanese ancestry. In addition, by employing the additive model for aggregating the effect of seven variants, we aimed to verify the genetic heterogeneity of schizophrenia diagnosed by an operative diagnostic manual, the DSM-IV. Each positively suggested genetic polymorphism was ranked according to its p-value, then the seven top-ranked variants (p Japanese population. It is also important to aggregate the updated positive variants in the SZGene database when the replication work is conducted.

Genetic diversity in a collection of ornamental squash (Cucurbita pepo L.

Directory of Open Access Journals (Sweden)

Mladenović Emina

2014-01-01

Full Text Available The aim of this study is collecting and preserving of unique Cucurbita pepo germplasm in Serbia. This study also describes the intraspecific variation of C. pepo within twenty germplasm accessions. Conservation work aimed to develop a representative core collection of C. pepo germplasm, to guide future studies and breeding of its ornamental use. A wide range of C. pepo germplasm was collected from diferent parts of the world. Nineteen variables were recorded in 20 varieties to determine the overall degree of polymorphism and to detect similarities among them. Qualitative traits of fruit such is shape, color and texture, showed immense variation. Coefficient of variation were highest for fruit length, fruit weight and number of fruits per plant (CV=56.69161.32%, while they were the lowest for leaf length (CV=20.65%. Morphological characterization is need to facilitate the use of C. pepo varieties in breeding work. Based on the PCA results, 20 accessions of squash are separate in five groups. Those groups are unique in qualitative and quantitative traits. Knowledge of genetic divergence among varieties is essential for breeding.

Development of high performance core for large fast breeder reactors

International Nuclear Information System (INIS)

Inoue, Kotaro; Kawashima, Katsuyuki; Watari, Yoshio.

1982-01-01

Subsequently to the fast breeder prototype reactor ''Monju'', the construction of a demonstration reactor with 1000 MWe output is planned. This research aims at the establishment of the concept of a large core with excellent fuel breeding property and safety for a demonstration and commercial reactors. For the purpose, the optimum specification of fuel design as a large core was clarified, and the new construction of a core was examined, in which a disk-shaped blanket with thin peripheral edge is introduced at the center of a core. As the result, such prospect was obtained that the time for fuel doubling would be 1/2, and the energy generated in a core collapse accident would be about 1/5 as compared with a large core using the same fuel as ''Monju''. Generally, as a core is enlarged, the rate of breeding lowers. If a worst core collapse accident occurs, the scale of accident will be very large in the case of a ''Monju'' type large core. In an unhomogeneous core, an internal blanket is provided in the core for the purpose of improving the breeding property and safety. Hitachi Ltd. developed the concept of a large core unhomogeneous in axial direction and proposed it. The research on the fuel design for a large core, an unhomogeneous core and its core collapse accident is reported. (Kako, I.)

Coupling between core and cladding modes in a helical core fiber with large core offset

International Nuclear Information System (INIS)

Napiorkowski, Maciej; Urbanczyk, Waclaw

2016-01-01

We analyzed the effect of resonant coupling between core and cladding modes in a helical core fiber with large core offset using the fully vectorial method based on the transformation optics formalism. Our study revealed that the resonant couplings to lower order cladding modes predicted by perturbative methods and observed experimentally in fibers with small core offsets are in fact prohibited for larger core offsets. This effect is related to the lack of phase matching caused by elongation of the optical path of the fundamental modes in the helical core. Moreover, strong couplings to the cladding modes of the azimuthal modal number much higher than predicted by perturbative methods may be observed for large core offsets, as the core offset introduces higher order angular harmonics in the field distribution of the fundamental modes. Finally, in contrast to previous studies, we demonstrate the existence of spectrally broad polarization sensitive couplings to the cladding modes suggesting that helical core fibers with large core offsets may be used as broadband circular polarizers. (paper)

Evaluation of In-Core Fuel Management for the Transition Cores of RSG-GAS Reactor to Full-Silicide Core

International Nuclear Information System (INIS)

S, Tukiran; MS, Tagor; P, Surian

2003-01-01

The core conversion of RSG-GAS reactor from oxide to silicide core with meat density of 2.96 gU/cc has been done. The core-of RSG-GAS reactor has been operated full core of silicide fuels which is started with the mixed core of oxide-silicide start from core 36. Based on previous work, the calculated core parameter for the cores were obtained and it is needed 9 transition cores (core 36 - 44) to achieve a full-silicide core (core 45). The objective of this work is to acquire the effect of the increment of the number of silicide fuel on the core parameters. Conversion core was achieved by transition cores mixed oxide-silicide fuels. Each transition core is calculated and measured core parameter such as, excess reactivity and shutdown margin. Calculation done by Batan-EQUIL-2D code and measurement of the core parameters was carried out using the method of compensation of couple control rods. The results of calculation and experiment shows that the excess reactivity trends lower with the increment of the number of silicide fuel in the core. However, the shutdown margin is not change with the increment of the number of silicide fuel. Therefore, the transition cores can be operated safely to a full-silicide core

Multicycle Optimization of Advanced Gas-Cooled Reactor Loading Patterns Using Genetic Algorithms

International Nuclear Information System (INIS)

Ziver, A. Kemal; Carter, Jonathan N.; Pain, Christopher C.; Oliveira, Cassiano R.E. de; Goddard, Antony J. H.; Overton, Richard S.

2003-01-01

A genetic algorithm (GA)-based optimizer (GAOPT) has been developed for in-core fuel management of advanced gas-cooled reactors (AGRs) at HINKLEY B and HARTLEPOOL, which employ on-load and off-load refueling, respectively. The optimizer has been linked to the reactor analysis code PANTHER for the automated evaluation of loading patterns in a two-dimensional geometry, which is collapsed from the three-dimensional reactor model. GAOPT uses a directed stochastic (Monte Carlo) algorithm to generate initial population members, within predetermined constraints, for use in GAs, which apply the standard genetic operators: selection by tournament, crossover, and mutation. The GAOPT is able to generate and optimize loading patterns for successive reactor cycles (multicycle) within acceptable CPU times even on single-processor systems. The algorithm allows radial shuffling of fuel assemblies in a multicycle refueling optimization, which is constructed to aid long-term core management planning decisions. This paper presents the application of the GA-based optimization to two AGR stations, which apply different in-core management operational rules. Results obtained from the testing of GAOPT are discussed

Genetic algorithm with fuzzy clustering for optimization of nuclear reactor problems

International Nuclear Information System (INIS)

Machado, Marcelo Dornellas; Sacco, Wagner Figueiredo; Schirru, Roberto

2000-01-01

Genetic Algorithms (GAs) are biologically motivated adaptive systems which have been used, with good results, in function optimization. However, traditional GAs rapidly push an artificial population toward convergence. That is, all individuals in the population soon become nearly identical. Niching Methods allow genetic algorithms to maintain a population of diverse individuals. GAs that incorporate these methods are capable of locating multiple, optimal solutions within a single population. The purpose of this study is to introduce a new niching technique based on the fuzzy clustering method FCM, bearing in mind its eventual application in nuclear reactor related problems, specially the nuclear reactor core reload one, which has multiple solutions. tests are performed using widely known test functions and their results show that the new method is quite promising, specially to a future application in real world problems like the nuclear reactor core reload. (author)

Genetic determinants of common epilepsies

DEFF Research Database (Denmark)

2014-01-01

and insufficient power. We aimed to identify risk loci through meta-analyses of genome-wide association studies for all epilepsy and the two largest clinical subtypes (genetic generalised epilepsy and focal epilepsy). METHODS: We combined genome-wide association data from 12 cohorts of individuals with epilepsy...... not previously implicated in epilepsy and provides further evidence about the genetic architecture of these disorders, with the ultimate aim of assisting in disease classification and prognosis. The data suggest that specific loci can act pleiotropically raising risk for epilepsy broadly, or can have effects...... and controls from population-based datasets. Controls were ethnically matched with cases. We phenotyped individuals with epilepsy into categories of genetic generalised epilepsy, focal epilepsy, or unclassified epilepsy. After standardised filtering for quality control and imputation to account for different...

Core Vocabulary: Its Morphological Content and Presence in Exemplar Texts

Science.gov (United States)

Hiebert, Elfrieda H.; Goodwin, Amanda P.; Cervetti, Gina N.

2018-01-01

This study addresses the distribution of words in texts at different points of schooling. The first aim was to identify a core vocabulary that accounts for the majority of the words in texts through the lens of morphological families. Results showed that 2,451 morphological families, averaging 4.61 members, make up the core vocabulary of school…

The role of environment and core-margin effects on range-wide phenotypic variation in a montane grasshopper.

Science.gov (United States)

Noguerales, V; García-Navas, V; Cordero, P J; Ortego, J

2016-11-01

The integration of genetic information with ecological and phenotypic data constitutes an effective approach to gain insight into the mechanisms determining interpopulation variability and the evolutionary processes underlying local adaptation and incipient speciation. Here, we use the Pyrenean Morales grasshopper (Chorthippus saulcyi moralesi) as study system to (i) analyse the relative role of genetic drift and selection in range-wide patterns of phenotypic differentiation and (ii) identify the potential selective agents (environment, elevation) responsible for variation. We also test the hypothesis that (iii) the development of dispersal-related traits is associated with different parameters related to population persistence/turnover, including habitat suitability stability over the last 120 000 years, distance to the species distribution core and population genetic variability. Our results indicate that selection shaped phenotypic differentiation across all the studied morphological traits (body size, forewing length and shape). Subsequent analyses revealed that among-population differentiation in forewing length was significantly explained by a temperature gradient, suggesting an adaptive response to thermoregulation or flight performance under contrasting temperature regimes. We found support for our hypothesis predicting a positive association between the distance to the species distribution core and the development of dispersal-related morphology, which suggests an increased dispersal capability in populations located at range edges that, in turn, exhibit lower levels of genetic variability. Overall, our results indicate that range-wide patterns of phenotypic variation are partially explained by adaptation in response to local environmental conditions and differences in habitat persistence between core and peripheral populations. © 2016 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2016 European Society For Evolutionary

Efficient Execution of Video Applications on Heterogeneous Multi- and Many-Core Processors

NARCIS (Netherlands)

Pereira de Azevedo Filho, A.

2011-01-01

In this dissertation we present methodologies and evaluations aiming at increasing the efficiency of video coding applications for heterogeneous many-core processors composed of SIMD-only, scratchpad memory based cores. Our contributions are spread in three different fronts: thread-level parallelism

Implicit Unstructured Computational Aerodynamics on Many-Integrated Core Architecture

KAUST Repository

Al Farhan, Mohammed A.

2014-05-04

This research aims to understand the performance of PETSc-FUN3D, a fully nonlinear implicit unstructured grid incompressible or compressible Euler code with origins at NASA and the U.S. DOE, on many-integrated core architecture and how a hybridprogramming paradigm (MPI+OpenMP) can exploit Intel Xeon Phi hardware with upwards of 60 cores per node and 4 threads per core. For the current contribution, we focus on strong scaling with many-integrated core hardware. In most implicit PDE-based codes, while the linear algebraic kernel is limited by the bottleneck of memory bandwidth, the flux kernel arising in control volume discretization of the conservation law residuals and the preconditioner for the Jacobian exploits the Phi hardware well.

Core catcher concepts future PWR-Plants

International Nuclear Information System (INIS)

Alsmeyer, H.; Werle, H.

1994-01-01

Light water reactors of the next generation should have still greater passive safety, even in the most serious accidents. This includes the long term safe inclusion of the core inventory in the case of core meltdown accidents. The three concepts for cooling the liquefied core outside the reactor pressure vessel examined by KfK should remove the post-shutdown heat by direct contact of the melt with water. The geometric distribution of the melt increases its surface area, so that favourable conditions for heat removal from the poorly thermally-conducting melt are created and complete quick solidification occurs. The experiments examine both the relocation and distribution mechanisms of the melt and the reactions occurring when water enters. As strong interaction is possible on direct contact of the melt with water, an important aim is experimental determination and limitation of any resulting mechanical stresses. (orig./HP) [de

Optimal Design of the Transverse Flux Machine Using a Fitted Genetic Algorithm with Real Parameters

DEFF Research Database (Denmark)

Argeseanu, Alin; Ritchie, Ewen; Leban, Krisztina Monika

2012-01-01

This paper applies a fitted genetic algorithm (GA) to the optimal design of transverse flux machine (TFM). The main goal is to provide a tool for the optimal design of TFM that is an easy to use. The GA optimizes the analytic basic design of two TFM topologies: the C-core and the U-core. First...

Genetic dissection of mammalian ERAD through comparative haploid and CRISPR forward genetic screens

DEFF Research Database (Denmark)

Timms, Richard T.; Menzies, Sam A.; Tchasovnikarova, Iva A.

2016-01-01

The application of forward genetic screens to cultured human cells represents a powerful method to study gene function. The repurposing of the bacterial CRISPR/Cas9 system provides an effective method to disrupt gene function in mammalian cells, and has been applied to genome-wide screens. Here, we...... compare the efficacy of genome-wide CRISPR/Cas9-mediated forward genetic screens versus gene-trap mutagenesis screens in haploid human cells, which represent the existing ‘gold standard’ method. This head-to-head comparison aimed to identify genes required for the endoplasmic reticulum....../3-associated disulphide reductase. Genome-wide CRISPR/Cas9-mediated screens together with haploid genetic screens provide a powerful addition to the forward genetic toolbox....

Prospects for future uranium savings through LWRs with high performance cores

International Nuclear Information System (INIS)

Mochida, T.; Yamamoto, T.; Sasaki, M.; Matsuura, H.; Ueji, M.; Murata, T.; Kanda, K.; Oka, Y.; Kondo, S.

1995-01-01

Since 1986, Nuclear Power Engineering Cooperation (NUPEC) has been studying four types of LWR high performance core concepts (i.e., the uranium saving core I (USC-I), the uranium saving core II (USC-II), the high moderation core (HMC) and the low moderation core (LMC)), which aim at improvement of uranium and plutonium utilization. After the evaluation of fundamental core performance and uranium and plutonium material balance for each reactor, potential uranium savings with different reactor strategies are evaluated for the Japanese scenario with assumption of the growth of future nuclear power plant generation, annual reprocessing capacity and schedules for the introduction of high performance core. At 2030, about 3-6% savings in uranium demand are expected by USC-I or USC-II strategy, while about 14% savings by HMC strategy and about 8% by LMC strategy. (author)

Genetic diversity of Shaanxi soybean landraces based on ...

African Journals Online (AJOL)

DR TONUKARI NYEROVWO

2011-06-06

Jun 6, 2011 ... Fax: +86. 29 87082604. Abbreviations: NEsp, Northeastern spring .... the present study, genetic diversity of this primary core .... spectroscopy DA7200 (Sweden Perten instruments Company). ... All primers were synthesized ..... 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 MS. SSR Locus. G e n e tic d.

Core Professionalism Education in Surgery: A Systematic Review

Directory of Open Access Journals (Sweden)

Akile Sarıoğlu Büke

2018-03-01

Full Text Available Background: Professionalism education is one of the major elements of surgical residency education. Aims: To evaluate the studies on core professionalism education programs in surgical professionalism education. Study Design: Systematic review. Methods: This systematic literature review was performed to analyze core professionalism programs for surgical residency education published in English with at least three of the following features: program developmental model/instructional design method, aims and competencies, methods of teaching, methods of assessment, and program evaluation model or method. A total of 27083 articles were retrieved using EBSCOHOST, PubMed, Science Direct, Web of Science, and manual search. Results: Eight articles met the selection criteria. The instructional design method was presented in only one article, which described the Analysis, Design, Development, Implementation, and Evaluation model. Six articles were based on the Accreditation Council for Graduate Medical Education criterion, although there was significant variability in content. The most common teaching method was role modeling with scenario- and case-based learning. A wide range of assessment methods for evaluating professionalism education were reported. The Kirkpatrick model was reported in one article as a method for program evaluation. Conclusion: It is suggested that for a core surgical professionalism education program, developmental/instructional design model, aims and competencies, content, teaching methods, assessment methods, and program evaluation methods/models should be well defined, and the content should be comparable.

Earth's inner core: Innermost inner core or hemispherical variations?

NARCIS (Netherlands)

Lythgoe, K. H.; Deuss, A.|info:eu-repo/dai/nl/412396610; Rudge, J. F.; Neufeld, J. A.

2014-01-01

The structure of Earth's deep inner core has important implications for core evolution, since it is thought to be related to the early stages of core formation. Previous studies have suggested that there exists an innermost inner core with distinct anisotropy relative to the rest of the inner core.

Dependence of Core and Extended Flux on Core Dominance ...

Indian Academy of Sciences (India)

Abstract. Based on two extragalactic radio source samples, the core dominance parameter is calculated, and the correlations between the core/extended flux density and core dominance parameter are investi- gated. When the core dominance parameter is lower than unity, it is linearly correlated with the core flux density, ...

Thermal-hydraulic characteristics of double flat core HCLWR

International Nuclear Information System (INIS)

Sugimoto, Jun; Iwamura, Takamichi; Okubo, Tsutomu; Murao, Yoshio

1989-02-01

A thermal-hydraulic characteristics of double flat core high conversion light water reactor (HCLWR) is described. The concept of flat core proposed by Ishiguro et al. is to achieve negative void reactivity coefficient in tight lattice core, and at the same time, high conversion ratio and high burnup can be obtainable. The proposed double flat core HCLWR, based on these physical advantages and the consideration of safety assurance, aims at efficient use of the pressure vessel space to produce comparable thermal output as current 3-loop PWRs. The present work revealed the following items concerning the thermalhydraulic feasibility of the double flat core HCLWR: (1) Main thermal-hydraulic parameters of the plant can be almost the same as current PWRs, showing the use of PWR standard components without major modifications except in core region. (2) Heat removal from the fuel rod in a steady operational condition has enough margin to the critical heat flux (CHF) limit, which is evaluated with the existing CHF correlations. (3) The calculation by REFLA code shows that the maximum cladding temperature in LOCA-reflood is estimated to be far lower than the licensing criteria. It is therefore considered that the proposed double flat core HCLWR is feasible from the point of thermal-hydraulics. Since the available data base has certain applicational limit to the very short core as the present double flat core HCLWR, further detailed assessment is required. (author)

Pressurized water reactor in-core nuclear fuel management by tabu search

International Nuclear Information System (INIS)

Hill, Natasha J.; Parks, Geoffrey T.

2015-01-01

Highlights: • We develop a tabu search implementation for PWR reload core design. • We conduct computational experiments to find optimal parameter values. • We test the performance of the algorithm on two representative PWR geometries. • We compare this performance with that given by established optimization methods. • Our tabu search implementation outperforms these methods in all cases. - Abstract: Optimization of the arrangement of fuel assemblies and burnable poisons when reloading pressurized water reactors has, in the past, been performed with many different algorithms in an attempt to make reactors more economic and fuel efficient. The use of the tabu search algorithm in tackling reload core design problems is investigated further here after limited, but promising, previous investigations. The performance of the tabu search implementation developed was compared with established genetic algorithm and simulated annealing optimization routines. Tabu search outperformed these existing programs for a number of different objective functions on two different representative core geometries

PanCoreGen - Profiling, detecting, annotating protein-coding genes in microbial genomes.

Science.gov (United States)

Paul, Sandip; Bhardwaj, Archana; Bag, Sumit K; Sokurenko, Evgeni V; Chattopadhyay, Sujay

2015-12-01

A large amount of genomic data, especially from multiple isolates of a single species, has opened new vistas for microbial genomics analysis. Analyzing the pan-genome (i.e. the sum of genetic repertoire) of microbial species is crucial in understanding the dynamics of molecular evolution, where virulence evolution is of major interest. Here we present PanCoreGen - a standalone application for pan- and core-genomic profiling of microbial protein-coding genes. PanCoreGen overcomes key limitations of the existing pan-genomic analysis tools, and develops an integrated annotation-structure for a species-specific pan-genomic profile. It provides important new features for annotating draft genomes/contigs and detecting unidentified genes in annotated genomes. It also generates user-defined group-specific datasets within the pan-genome. Interestingly, analyzing an example-set of Salmonella genomes, we detect potential footprints of adaptive convergence of horizontally transferred genes in two human-restricted pathogenic serovars - Typhi and Paratyphi A. Overall, PanCoreGen represents a state-of-the-art tool for microbial phylogenomics and pathogenomics study. Copyright © 2015 Elsevier Inc. All rights reserved.

Public attitudes towards genetically-modified food

NARCIS (Netherlands)

Miles, S.; Ueland, O.; Frewer, L.J.

2005-01-01

Abstract: Purpose - This study aimed to investigate the impact of information about traceability and new detection methods for identifying genetically-modified organisms in food, on consumer attitudes towards genetically-modified food and consumer trust in regulators in Italy, Norway and England. It

On-line core monitoring with CORE MASTER / PRESTO

International Nuclear Information System (INIS)

Lindahl, S.O.; Borresen, S.; Ovrum, S.

1986-01-01

Advanced calculational tools are instrumental in improving reactor plant capacity factors and fuel utilization. The computer code package CORE MASTER is an integrated system designed to achieve this objective. The system covers all main activities in the area of in-core fuel management for boiling water reactors; design, operation support, and on-line core monitoring. CORE MASTER operates on a common data base, which defines the reactor and documents the operating history of the core and of all fuel bundles ever used

Genetic Breeding and Diversity of the Genus Passiflora: Progress and Perspectives in Molecular and Genetic Studies

Directory of Open Access Journals (Sweden)

Carlos Bernard M. Cerqueira-Silva

2014-08-01

Full Text Available Despite the ecological and economic importance of passion fruit (Passiflora spp., molecular markers have only recently been utilized in genetic studies of this genus. In addition, both basic genetic researches related to population studies and pre-breeding programs of passion fruit remain scarce for most Passiflora species. Considering the number of Passiflora species and the increasing use of these species as a resource for ornamental, medicinal, and food purposes, the aims of this review are the following: (i to present the current condition of the passion fruit crop; (ii to quantify the applications and effects of using molecular markers in studies of Passiflora; (iii to present the contributions of genetic engineering for passion fruit culture; and (iv to discuss the progress and perspectives of this research. Thus, the present review aims to summarize and discuss the relationship between historical and current progress on the culture, breeding, and molecular genetics of passion fruit.

Effect of Core Training on 16 Year-Old Soccer Players

Science.gov (United States)

Afyon, Yakup Akif

2014-01-01

Core trainings have been widely used by trainers recently in order to improve performance of soccer players. In this context, the aim of this study is to examine the effect of core training on some motoric capabilities of 16 years old soccer players. Thirty certified soccer players who were 16 years old from B.B. Bodrumspor Club in 2013-2014…

A global genetic interaction network maps a wiring diagram of cellular function.

Science.gov (United States)

Costanzo, Michael; VanderSluis, Benjamin; Koch, Elizabeth N; Baryshnikova, Anastasia; Pons, Carles; Tan, Guihong; Wang, Wen; Usaj, Matej; Hanchard, Julia; Lee, Susan D; Pelechano, Vicent; Styles, Erin B; Billmann, Maximilian; van Leeuwen, Jolanda; van Dyk, Nydia; Lin, Zhen-Yuan; Kuzmin, Elena; Nelson, Justin; Piotrowski, Jeff S; Srikumar, Tharan; Bahr, Sondra; Chen, Yiqun; Deshpande, Raamesh; Kurat, Christoph F; Li, Sheena C; Li, Zhijian; Usaj, Mojca Mattiazzi; Okada, Hiroki; Pascoe, Natasha; San Luis, Bryan-Joseph; Sharifpoor, Sara; Shuteriqi, Emira; Simpkins, Scott W; Snider, Jamie; Suresh, Harsha Garadi; Tan, Yizhao; Zhu, Hongwei; Malod-Dognin, Noel; Janjic, Vuk; Przulj, Natasa; Troyanskaya, Olga G; Stagljar, Igor; Xia, Tian; Ohya, Yoshikazu; Gingras, Anne-Claude; Raught, Brian; Boutros, Michael; Steinmetz, Lars M; Moore, Claire L; Rosebrock, Adam P; Caudy, Amy A; Myers, Chad L; Andrews, Brenda; Boone, Charles

2016-09-23

We generated a global genetic interaction network for Saccharomyces cerevisiae, constructing more than 23 million double mutants, identifying about 550,000 negative and about 350,000 positive genetic interactions. This comprehensive network maps genetic interactions for essential gene pairs, highlighting essential genes as densely connected hubs. Genetic interaction profiles enabled assembly of a hierarchical model of cell function, including modules corresponding to protein complexes and pathways, biological processes, and cellular compartments. Negative interactions connected functionally related genes, mapped core bioprocesses, and identified pleiotropic genes, whereas positive interactions often mapped general regulatory connections among gene pairs, rather than shared functionality. The global network illustrates how coherent sets of genetic interactions connect protein complex and pathway modules to map a functional wiring diagram of the cell. Copyright © 2016, American Association for the Advancement of Science.

Restraint system for core elements of a reactor core

International Nuclear Information System (INIS)

Class, G.

1975-01-01

In a nuclear reactor, a core element bundle formed of a plurality of side-by-side arranged core elements is surrounded by restraining elements that exert a radially inwardly directly restraining force generating friction forces between the core elements in a restraining plane that is transverse to the core element axes. The adjoining core elements are in rolling contact with one another in the restraining plane by virtue of rolling-type bearing elements supported in the core elements. (Official Gazette)

Overview of PEC core design and requirements for PEC core restraint systems

International Nuclear Information System (INIS)

Cecchini, F.

1984-01-01

The Italian PEC reactor is an experimental loop type fast reactor of 120 MW thermal. Its main purpose is the in-pile development of fast reactor fuel. The mechanical principles in PEC core design and current modifications to ensure a safe seismic perturbation and shutdown are discussed in this paper. These anti-seismic modifications are aimed to limit the extent of reactivity perturbation during the seismic event and to guarantee control rod entry at any time during the seismic event

Identifying ELIXIR Core Data Resources.

Science.gov (United States)

Durinx, Christine; McEntyre, Jo; Appel, Ron; Apweiler, Rolf; Barlow, Mary; Blomberg, Niklas; Cook, Chuck; Gasteiger, Elisabeth; Kim, Jee-Hyub; Lopez, Rodrigo; Redaschi, Nicole; Stockinger, Heinz; Teixeira, Daniel; Valencia, Alfonso

2016-01-01

The core mission of ELIXIR is to build a stable and sustainable infrastructure for biological information across Europe. At the heart of this are the data resources, tools and services that ELIXIR offers to the life-sciences community, providing stable and sustainable access to biological data. ELIXIR aims to ensure that these resources are available long-term and that the life-cycles of these resources are managed such that they support the scientific needs of the life-sciences, including biological research. ELIXIR Core Data Resources are defined as a set of European data resources that are of fundamental importance to the wider life-science community and the long-term preservation of biological data. They are complete collections of generic value to life-science, are considered an authority in their field with respect to one or more characteristics, and show high levels of scientific quality and service. Thus, ELIXIR Core Data Resources are of wide applicability and usage. This paper describes the structures, governance and processes that support the identification and evaluation of ELIXIR Core Data Resources. It identifies key indicators which reflect the essence of the definition of an ELIXIR Core Data Resource and support the promotion of excellence in resource development and operation. It describes the specific indicators in more detail and explains their application within ELIXIR's sustainability strategy and science policy actions, and in capacity building, life-cycle management and technical actions. The identification process is currently being implemented and tested for the first time. The findings and outcome will be evaluated by the ELIXIR Scientific Advisory Board in March 2017. Establishing the portfolio of ELIXIR Core Data Resources and ELIXIR Services is a key priority for ELIXIR and publicly marks the transition towards a cohesive infrastructure.

On Gene Concepts and Teaching Genetics: Episodes from Classical Genetics

Science.gov (United States)

Burian, Richard M.

2013-02-01

This paper addresses the teaching of advanced high school courses or undergraduate courses for non-biology majors about genetics or history of genetics. It will probably be difficult to take the approach described here in a high school science course, although the general approach could help improve such courses. It would be ideal for a college course in history of genetics or a course designed to teach non-science majors how science works or the rudiments of the genetics in a way that will help them as citizens. The approach aims to teach the processes of discovery, correction, and validation by utilizing illustrative episodes from the history of genetics. The episodes are treated in way that should foster understanding of basic questions about genes, the sorts of techniques used to answer questions about the constitution and structure of genes, how they function, and what they determine, and some of the major biological disagreements that arose in dealing with these questions. The material covered here could be connected to social and political issues raised by genetics, but these connections are not surveyed here. As it is, to cover this much territory, the article is limited to four major episodes from Mendel's paper to the beginning of World War II. A sequel will deal with the molecularization of genetics and with molecular gene concepts through the Human Genome Project.

Preliminary considerations on the startup phase for the ASTRID core

International Nuclear Information System (INIS)

Mignot, G.

2015-01-01

This paper presents preliminary considerations on the startup phase for the ASTRID core, as well as an overview of the different steps before reaching the optimised equilibrium core. The start-up phase is assumed to cover the period between loading the dummy core into the reactor (for commissioning tests) and achieving the optimised equilibrium core. Four main stages are considered: a first stage of start-up tests before fuel core loading, a second stage related to zero power and power ramp-up tests, a third stage corresponding to the transition from the first core to the equilibrium contractual core, and the last stage to reach the optimised performance for the equilibrium core. In the two last stages, a sub-assembly surveillance plan based on post-irradiation examinations is taken into account. As this work is in its preliminary stages, the first scenarios shown for the start-up phase must not be considered as the ASTRID reference scenarios. The scenarios strongly depend on the assumptions considered in the analysis, whereas those discussed in this paper aim at outlining the content and the duration of the starting phases for the ASTRID core, which will be useful in subsequently assessing the core sub-assembly fabrication needs. Assumptions for the start-up phase will be updated in accordance with progress on the ASTRID core design development and core qualification programme. (author)

Molecular genetic studies in flax (Linum usitatissimum L.)

NARCIS (Netherlands)

Vromans, J.

2006-01-01

In this thesis five molecular genetic studies on flax ( Linum usitatissimum L.) are described, of which two chapters aim to characterize the genetic structure and the amount of genetic diversity in the primary and secondary gene pool of the crop species. Three chapters describe the development of

Adjustment of cast metal post/cores modeled with different acrylic resins

OpenAIRE

Gusmão, João Milton Rocha; Pereira, Renato Piai; Alves, Guilhermino Oliveira; Pithon, Matheus Melo; Moreira, David Costa

2016-01-01

Aim: Evaluate the performance of four commercially available chemically-activated acrylic resins (CAARs) by measuring the level of displacement of the cores following casting. Materials and Methods: Two devices were constructed to model the cores based on a natural tooth. Forty post/cores were modeled, 10 in each of the following CAARs: Duralay (Reliance Dental, Illinois, USA), Pattern Resin (GC, Tokyo, Japan), Dencrilay (Dencril, Sao Paulo, Brazil), and Jet (Clássico, Sao Paulo, Brazil). Two...

Reconstruction and analysis of temperature and density spatial profiles inertial confinement fusion implosion cores

International Nuclear Information System (INIS)

Mancini, R. C.

2007-01-01

We discuss several methods for the extraction of temperature and density spatial profiles in inertial confinement fusion implosion cores based on the analysis of the x-ray emission from spectroscopic tracers added to the deuterium fuel. The ideas rely on (1) detailed spectral models that take into account collisional-radiative atomic kinetics, Stark broadened line shapes, and radiation transport calculations, (2) the availability of narrow-band, gated pinhole and slit x-ray images, and space-resolved line spectra of the core, and (3) several data analysis and reconstruction methods that include a multi-objective search and optimization technique based on a novel application of Pareto genetic algorithms to plasma spectroscopy. The spectroscopic analysis yields the spatial profiles of temperature and density in the core at the collapse of the implosion, and also the extent of shell material mixing into the core. Results are illustrated with data recorded in implosion experiments driven by the OMEGA and Z facilities

Study on core design for reduced-moderation water reactors

International Nuclear Information System (INIS)

Okubo, Tsutomu

2002-01-01

The Reduced-Moderation Water Reactor (RMWR) is a water-cooled reactor with the harder neutron spectrum comparing with the LWR, resulting from low neutron moderation due to reduced water volume fraction. Based on the difference from the spectrum from the LWR, the conversion from U-238 to Pu-239 is promoted and the new cores preferable to effective utilization of uranium resource can be possible Design study of the RMWR core started in 1997 and new four core concepts (three BWR cores and one PWR core) are recently evaluated in terms of control rod worths, plutonium multiple recycle, high burnup and void coefficient. Comparative evaluations show needed incorporation of control rod programming and simplified PUREX process as well as development of new fuel cans for high burnup of 100 GW-d/t. Final choice of design specifications will be made at the next step aiming at realization of the RMWR. (T. Tanaka)

Study on core design for reduced-moderation water reactors

Energy Technology Data Exchange (ETDEWEB)

Okubo, Tsutomu [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment

2002-12-01

The Reduced-Moderation Water Reactor (RMWR) is a water-cooled reactor with the harder neutron spectrum comparing with the LWR, resulting from low neutron moderation due to reduced water volume fraction. Based on the difference from the spectrum from the LWR, the conversion from U-238 to Pu-239 is promoted and the new cores preferable to effective utilization of uranium resource can be possible Design study of the RMWR core started in 1997 and new four core concepts (three BWR cores and one PWR core) are recently evaluated in terms of control rod worths, plutonium multiple recycle, high burnup and void coefficient. Comparative evaluations show needed incorporation of control rod programming and simplified PUREX process as well as development of new fuel cans for high burnup of 100 GW-d/t. Final choice of design specifications will be made at the next step aiming at realization of the RMWR. (T. Tanaka)

Warming rays in cluster cool cores

Science.gov (United States)

Colafrancesco, S.; Marchegiani, P.

2008-06-01

Context: Cosmic rays are confined in the atmospheres of galaxy clusters and, therefore, they can play a crucial role in the heating of their cool cores. Aims: We discuss here the thermal and non-thermal features of a model of cosmic ray heating of cluster cores that can provide a solution to the cooling-flow problems. To this aim, we generalize a model originally proposed by Colafrancesco, Dar & DeRujula (2004) and we show that our model predicts specific correlations between the thermal and non-thermal properties of galaxy clusters and enables various observational tests. Methods: The model reproduces the observed temperature distribution in clusters by using an energy balance condition in which the X-ray energy emitted by clusters is supplied, in a quasi-steady state, by the hadronic cosmic rays, which act as “warming rays” (WRs). The temperature profile of the intracluster (IC) gas is strictly correlated with the pressure distribution of the WRs and, consequently, with the non-thermal emission (radio, hard X-ray and gamma-ray) induced by the interaction of the WRs with the IC gas and the IC magnetic field. Results: The temperature distribution of the IC gas in both cool-core and non cool-core clusters is successfully predicted from the measured IC plasma density distribution. Under this contraint, the WR model is also able to reproduce the thermal and non-thermal pressure distribution in clusters, as well as their radial entropy distribution, as shown by the analysis of three clusters studied in detail: Perseus, A2199 and Hydra. The WR model provides other observable features of galaxy clusters: a correlation of the pressure ratio (WRs to thermal IC gas) with the inner cluster temperature (P_WR/P_th) ˜ (kT_inner)-2/3, a correlation of the gamma-ray luminosity with the inner cluster temperature Lγ ˜ (kT_inner)4/3, a substantial number of cool-core clusters observable with the GLAST-LAT experiment, a surface brightness of radio halos in cool-core clusters

Utilization of niching methods of genetic algorithms in nuclear reactor problems optimization

International Nuclear Information System (INIS)

Sacco, Wagner Figueiredo; Schirru, Roberto

2000-01-01

Genetic Algorithms (GAs) are biologically motivated adaptive systems which have been used, with good results, in function optimization. However, traditional GAs rapidly push an artificial population toward convergence. That is, all individuals in the population soon become nearly identical. Niching Methods allow genetic algorithms to maintain a population of diverse individuals. GAs that incorporate these methods are capable of locating multiple, optimal solutions within a single population. The purpose of this study is to test existing niching techniques and two methods introduced herein, bearing in mind their eventual application in nuclear reactor related problems, specially the nuclear reactor core reload one, which has multiple solutions. Tests are performed using widely known test functions and their results show that the new methods are quite promising, specially in real world problems like the nuclear reactor core reload. (author)

Core Competencies in Advanced Training: What Supervisors Say about Graduate Training

Science.gov (United States)

Nelson, Thorana S.; Graves, Todd

2011-01-01

In an attempt to identify needed mental health skills, many professional organizations have or are in the process of establishing core competency standards for their professions. The AAMFT identified 128 core competencies for the independent practice of MFT. The aim of this study was to learn the opinions of AAMFT Approved Supervisors as to how…

Thermal interaction of core melt debris with the TMI-2 baffle, core-former, and lower head structures

International Nuclear Information System (INIS)

Cronenberg, A.W.; Tolman, E.L.

1987-09-01

Recent inspection of the TMI-2 core-former baffle walls (vertical), former plates (horizontal), and lower plenum has been conducted to assess potential damage to these structures. Video observations show evidence of localized melt failure of the baffle walls, whereas fiberoptics data indicate the presence of resolidified debris on the former plates. Lower plenum inspection also confirms the presence of 20 tons or more of core debris in the lower plenum. These data indicate massive core melt relocation and the potential for melt attack on vessel structural components. This report presents analyses aimed at developing an understanding of melt relocation behavior and damage progression to TMI-2 vessel components. Thermal analysis indicates melt-through of the baffle plates, but maintenance of structural integrity of the former plates and lower head. Differences in the damage of these structures is attributed largely to differences in contact time with melt debris and pressure of water. 29 refs., 17 figs., 9 tabs

Fire resistance of extruded hollow-core slabs

DEFF Research Database (Denmark)

Hertz, Kristian Dahl; Sørensen, Lars Schiøtt; Giuliani, Luisa

2017-01-01

to the structural codes with data derived from a standard fire test and from a thorough examination of the comprehensive test documentation available on fire exposed hollow-core slabs. Findings – Mechanisms for loss of load-bearing capacity are clarified, and evidence of the fire resistance is found. Originality......Purpose – Prefabricated extruded hollow-core slabs are preferred building components for floor structures in several countries. It is therefore important to be able to document the fire resistance of these slabs proving fulfilment of standard fire resistance requirements of 60 and 120 min found...... in most national building regulations. The paper aims to present a detailed analysis of the mechanisms responsible for the loss of loadbearing capacity of hollow-core slabs when exposed to fire. Design/methodology/approach – Furthermore, it compares theoretica calculation and assessment according...

A Simple Interactive Introduction to Teaching Genetic Engineering

Science.gov (United States)

Child, Paula

2013-01-01

In the UK, at key stage 4, students aged 14-15 studying GCSE Core Science or Unit 1 of the GCSE Biology course are required to be able to describe the process of genetic engineering to produce bacteria that can produce insulin. The simple interactive introduction described in this article allows students to consider the problem, devise a model and…

Design of a reactor core in the Oma Full MOX-ABWR

International Nuclear Information System (INIS)

Hama, Teruo

1999-01-01

The Electric Power Development Co., Ltd. has progressed a construction plan on an improved boiling-water reactor aiming at loading of MOX fuel in all reactor cores (full MOX-ABWR) at Oma-cho, Aomori prefecture, which is a last stage on application of approval on establishment at present. Here were described on outlines of reactor core in the full MOX-ABWR and its safety evaluation. For the full MOX-ABWR loading MOX fuel assembly into all reactor core, thermal and mechanical design analysis of fuel bars and core design analysis were conducted. As a result, it was confirmed that judgement standards in mixed core of MOX fuel and uranium fuel were also applicable as well as that in uranium fuel. (G.K.)

Moving away from exhaustion: how core self-evaluations influence academic burnout.

Science.gov (United States)

Lian, Penghu; Sun, Yunfeng; Ji, Zhigang; Li, Hanzhong; Peng, Jiaxi

2014-01-01

Academic burnout refers to students who have low interest, lack of motivation, and tiredness in studying. Studies concerning how to prevent academic burnout are rare. The present study aimed to investigate the impact of core self-evaluations on the academic burnout of university students, and mainly focused on the confirmation of the mediator role of life satisfaction. A total of 470 university students accomplished the core self-evaluation scale, Satisfaction with Life, and academic burnout scale. Both core self-evaluations and life satisfaction were significantly correlated with academic burnout. Structural equation modeling indicated that life satisfaction partially mediated the relationship between core self-evaluations and academic burnout. Core self-evaluations significantly influence academic burnout and are partially mediated by life satisfaction.

Assessment on Evaluating Parameters of Rice Core Collections Constructed by Genotypic Values and Molecular Marker Information

Directory of Open Access Journals (Sweden)

Jian-cheng WANG

2007-06-01

Full Text Available Eleven evaluating parameters for rice core collection were assessed based on genotypic values and molecular marker information. Monte Carlo simulation combined with mixed linear model was used to eliminate the interference from environment in order to draw more reliable results. The coincidence rate of range (CR was the optimal parameter. Mean Simpson index (MD, mean Shannon-Weaver index of genetic diversity (MI and mean polymorphism information content (MPIC were important evaluating parameters. The variable rate of coefficient of variation (VR could act as an important reference parameter for evaluating the variation degree of core collection. Percentage of polymorphic loci (p could be used as a determination parameter for the size of core collection. Mean difference percentage (MD was a determination parameter for the reliability judgment of core collection. The effective evaluating parameters for core collection selected in the research could be used as criteria for sampling percentage in different plant germplasm populations.

Genetics and intelligence differences: five special findings

Science.gov (United States)

Plomin, R; Deary, I J

2015-01-01

Intelligence is a core construct in differential psychology and behavioural genetics, and should be so in cognitive neuroscience. It is one of the best predictors of important life outcomes such as education, occupation, mental and physical health and illness, and mortality. Intelligence is one of the most heritable behavioural traits. Here, we highlight five genetic findings that are special to intelligence differences and that have important implications for its genetic architecture and for gene-hunting expeditions. (i) The heritability of intelligence increases from about 20% in infancy to perhaps 80% in later adulthood. (ii) Intelligence captures genetic effects on diverse cognitive and learning abilities, which correlate phenotypically about 0.30 on average but correlate genetically about 0.60 or higher. (iii) Assortative mating is greater for intelligence (spouse correlations ~0.40) than for other behavioural traits such as personality and psychopathology (~0.10) or physical traits such as height and weight (~0.20). Assortative mating pumps additive genetic variance into the population every generation, contributing to the high narrow heritability (additive genetic variance) of intelligence. (iv) Unlike psychiatric disorders, intelligence is normally distributed with a positive end of exceptional performance that is a model for ‘positive genetics'. (v) Intelligence is associated with education and social class and broadens the causal perspectives on how these three inter-correlated variables contribute to social mobility, and health, illness and mortality differences. These five findings arose primarily from twin studies. They are being confirmed by the first new quantitative genetic technique in a century—Genome-wide Complex Trait Analysis (GCTA)—which estimates genetic influence using genome-wide genotypes in large samples of unrelated individuals. Comparing GCTA results to the results of twin studies reveals important insights into the genetic

A new paradigm for core design aimed at the sustainability of nuclear energy: The solution of the extended equilibrium state

International Nuclear Information System (INIS)

Artioli, Carlo; Grasso, Giacomo; Petrovich, Carlo

2010-01-01

The future expansion of nuclear energy, a technology identified as one of the main candidates for reducing the world's dependence on fossil fuels, requires a thorough analysis of the sustainability of this energy source for long-term supply. Generation-IV nuclear systems could represent a turning point for energy production by minimizing the environmental footprint of the fuel cycle. A new paradigm is thus required for reactor design, focusing, at the core design level, on both the closure of the fuel cycle and the effective utilization of natural resources. Within this framework, the so-called 'adiabatic core' concept represents a particularly interesting solution. It is based on the idea of ensuring by design a condition of equilibrium in the fuel cycle (i.e., an equilibrium 'fuel vector'), foreseeing nuclear power systems able to maintain a constant total amount of both plutonium and minor actinides (TRU), consuming only uranium (either natural or depleted), while discharging to the environment only fission products and reprocessing losses. Under such a hypothesis, all actinides can be continuously recycled in the same system, reducing both the waste volume and its long-term radiotoxicity, as well as utilizing effectively uranium resources. Two mathematical approaches have been devised to find the 'extended' equilibrium solution for the fuel vector. These methods are compared, validated with the codes MCNPX and FISPACT and applied to the European lead-cooled fast reactor ELSY, confirming the potential of this approach (e.g., a reduction by two orders of magnitude of the TRU mass in the final waste in comparison with the fuel cycle of Light Water Reactors operated in a once-through scenario).

The French initiative for scientific cores virtual curating : a user-oriented integrated approach

Science.gov (United States)

Pignol, Cécile; Godinho, Elodie; Galabertier, Bruno; Caillo, Arnaud; Bernardet, Karim; Augustin, Laurent; Crouzet, Christian; Billy, Isabelle; Teste, Gregory; Moreno, Eva; Tosello, Vanessa; Crosta, Xavier; Chappellaz, Jérome; Calzas, Michel; Rousseau, Denis-Didier; Arnaud, Fabien

2016-04-01

Managing scientific data is probably one the most challenging issue in modern science. The question is made even more sensitive with the need of preserving and managing high value fragile geological sam-ples: cores. Large international scientific programs, such as IODP or ICDP are leading an intense effort to solve this problem and propose detailed high standard work- and dataflows thorough core handling and curating. However most results derived from rather small-scale research programs in which data and sample management is generally managed only locally - when it is … The national excellence equipment program (Equipex) CLIMCOR aims at developing French facilities for coring and drilling investigations. It concerns indiscriminately ice, marine and continental samples. As part of this initiative, we initiated a reflexion about core curating and associated coring-data management. The aim of the project is to conserve all metadata from fieldwork in an integrated cyber-environment which will evolve toward laboratory-acquired data storage in a near future. In that aim, our demarche was conducted through an close relationship with field operators as well laboratory core curators in order to propose user-oriented solutions. The national core curating initiative currently proposes a single web portal in which all scientifics teams can store their field data. For legacy samples, this will requires the establishment of a dedicated core lists with associated metadata. For forthcoming samples, we propose a mobile application, under Android environment to capture technical and scientific metadata on the field. This application is linked with a unique coring tools library and is adapted to most coring devices (gravity, drilling, percussion, etc...) including multiple sections and holes coring operations. Those field data can be uploaded automatically to the national portal, but also referenced through international standards or persistent identifiers (IGSN, ORCID and INSPIRE

The Evolution of High-Mass Star-Forming Cores in the Nessie Nebula

Science.gov (United States)

Jackson, James; Rathborne, Jill; Sanhueza, Patricio; Whitaker, John Scott; Camarata, Matthew

2013-04-01

We aim to deduce the evolution of the ensemble properties of high-mass star-forming cores within a cluster-forming molecular clump. Two different theories of high-mass star-formation, "competitive accretion" and "monolithic collapse" make very different predictions for this evolution. In "competitive accretion" the clump will contain only low-mass cores in the early phases, and high-mass cores will be found in the later stages. In "monolithic collapse" high-mass cores are found early on, and the mass distribution of the cores will remain essentially unchanged. Both models predict cores to increase in temperature. We can classify evolutionary stage from Spitzer mid-IR images. We choose to study 6 cores in the Nessie nebula that span the complete range of protostellar evolution. Nessie is an ideal laboratory because all the cores are at the same distance and in the same Galactic environment.

Nuclear reactor core modelling in multifunctional simulators

International Nuclear Information System (INIS)

Puska, E.K.

1999-01-01

The thesis concentrates on the development of nuclear reactor core models for the APROS multifunctional simulation environment and the use of the core models in various kinds of applications. The work was started in 1986 as a part of the development of the entire APROS simulation system. The aim was to create core models that would serve in a reliable manner in an interactive, modular and multifunctional simulator/plant analyser environment. One-dimensional and three-dimensional core neutronics models have been developed. Both models have two energy groups and six delayed neutron groups. The three-dimensional finite difference type core model is able to describe both BWR- and PWR-type cores with quadratic fuel assemblies and VVER-type cores with hexagonal fuel assemblies. The one- and three-dimensional core neutronics models can be connected with the homogeneous, the five-equation or the six-equation thermal hydraulic models of APROS. The key feature of APROS is that the same physical models can be used in various applications. The nuclear reactor core models of APROS have been built in such a manner that the same models can be used in simulator and plant analyser applications, as well as in safety analysis. In the APROS environment the user can select the number of flow channels in the three-dimensional reactor core and either the homogeneous, the five- or the six-equation thermal hydraulic model for these channels. The thermal hydraulic model and the number of flow channels have a decisive effect on the calculation time of the three-dimensional core model and thus, at present, these particular selections make the major difference between a safety analysis core model and a training simulator core model. The emphasis on this thesis is on the three-dimensional core model and its capability to analyse symmetric and asymmetric events in the core. The factors affecting the calculation times of various three-dimensional BWR, PWR and WWER-type APROS core models have been

Nuclear reactor core modelling in multifunctional simulators

Energy Technology Data Exchange (ETDEWEB)

Puska, E.K. [VTT Energy, Nuclear Energy, Espoo (Finland)

1999-06-01

The thesis concentrates on the development of nuclear reactor core models for the APROS multifunctional simulation environment and the use of the core models in various kinds of applications. The work was started in 1986 as a part of the development of the entire APROS simulation system. The aim was to create core models that would serve in a reliable manner in an interactive, modular and multifunctional simulator/plant analyser environment. One-dimensional and three-dimensional core neutronics models have been developed. Both models have two energy groups and six delayed neutron groups. The three-dimensional finite difference type core model is able to describe both BWR- and PWR-type cores with quadratic fuel assemblies and VVER-type cores with hexagonal fuel assemblies. The one- and three-dimensional core neutronics models can be connected with the homogeneous, the five-equation or the six-equation thermal hydraulic models of APROS. The key feature of APROS is that the same physical models can be used in various applications. The nuclear reactor core models of APROS have been built in such a manner that the same models can be used in simulator and plant analyser applications, as well as in safety analysis. In the APROS environment the user can select the number of flow channels in the three-dimensional reactor core and either the homogeneous, the five- or the six-equation thermal hydraulic model for these channels. The thermal hydraulic model and the number of flow channels have a decisive effect on the calculation time of the three-dimensional core model and thus, at present, these particular selections make the major difference between a safety analysis core model and a training simulator core model. The emphasis on this thesis is on the three-dimensional core model and its capability to analyse symmetric and asymmetric events in the core. The factors affecting the calculation times of various three-dimensional BWR, PWR and WWER-type APROS core models have been

Study of plutonium multi-recycle in high moderation LWR cores

International Nuclear Information System (INIS)

Iwata, Yutaka; Yamamoto, Toru; Ueji, Masao; Hibi, Koki; Aoyama, Motoo; Sakurada, Koichi

2000-01-01

Nuclear Power Engineering Corporation (NUPEC) has been studying advanced cores that are dedicated to enhance the plutonium consumption per recycling for effective use of plutonium. In this study, a fissile plutonium consumption rate is adopted as an index of the effective use of plutonium, which is defined as a ratio of consumption to loading of fissile plutonium in a core. High moderation core concepts have been studied in order to increase this index based on full MOX cores in the latest designs of LWRs in Japan that are the Advanced Boiling Water Reactor (ABWR) and the Advanced Pressurized Water Reactor (APWR). As a part of this study, core performance in the case of plutonium multi-recycling has been surveyed with these higher moderation cores aiming further effective use of plutonium. The design and analyses for equilibrium cores show that nuclear and thermal hydraulics parameters satisfy design criteria, and a fissile plutonium consumption rate increases up to 20% for ABWRs and 30% for APWRs even in plutonium multi-recycling condition. It was confirmed that the high moderation cores are feasible from a viewpoint of nuclear and thermal hydraulics, safety and plutonium consumption in the condition of plutonium multi-recycling. (author)

A review of PFR core distortion experience

International Nuclear Information System (INIS)

Brook, A.J.

1984-01-01

Neutron induced voidage (NIV) swelling and irradiation creep, acting together or individually, produce deformation in core components exposed to a fast neutron flux and can lead to mechanical interaction between them. Today the nature of these processes is reasonably well understood, and reactor designers have two options in attempting to accomodate them: either by employing a flexible free standing design in which contact loadings are low but in which distortion may be high, or more commonly, by some type of restrained core in which inter-component loadings are high, but where distortion is relatively small. The aims of this paper are: a. to describe briefly the various operational limits of core and core component distortion and how they arise, for which a brief description of reactor construction is necessary; b. to outline how the problems of inter-component contact loadings are overcome for the interactive core; c. to describe some other potential problems which arise either from absolute swelling, or from differential swelling between components; of particular relevance here is the problem of contact loadings between absorber rods and their guide tubes; d. to comment on the degree of agreement with, and the feedback provided by, PIE findings; e. to show how the results of the work influence reactor operators and the reload program

Neutronic design of the RSG-GAS silicide core

Energy Technology Data Exchange (ETDEWEB)

Sembiring, T.M.; Kuntoro, I.; Hastowo, H. [Center for Development of Research Reactor Technology National Nuclear Energy Agency BATAN, PUSPIPTEK Serpong Tangerang, 15310 (Indonesia)

2002-07-01

The objective of core conversion program of the RSG-GAS multipurpose reactor is to convert the fuel from oxide, U{sub 3}O{sub 8}-Al to silicide, U{sub 3}Si{sub 2}-Al. The aim of the program is to gain longer operation cycle by having, which is technically possible for silicide fuel, a higher density. Upon constraints of the existing reactor system and utilization, an optimal fuel density in amount of 3.55 g U/cc was found. This paper describes the neutronic parameter design of the silicide equilibrium core and the design of its transition cores as well. From reactivity control point of view, a modification of control rod system is also discussed. All calculations are carried out by means of diffusion codes, Batan-EQUIL-2D, Batan-2DIFF and -3DIFF. The silicide core shows that longer operation cycle of 32 full power days can be achieved without decreasing the safety criteria and utilization capabilities. (author)

Core to College Evaluation: Statewide Networks. Connecting Education Systems and Stakeholders to Support College Readiness

Science.gov (United States)

Bracco, Kathy Reeves; Klarin, Becca; Broek, Marie; Austin, Kim; Finkelstein, Neal; Bugler, Daniel; Mundry, Susan

2014-01-01

The Core to College initiative aims to facilitate greater coordination between K-12 and postsecondary education systems around implementation of the Common Core State Standards and aligned assessments. Core to College grants have been awarded to teams in Colorado, Florida, Hawaii, Kentucky, Louisiana, Massachusetts, North Carolina, Oregon,…

Genetic Causes of Syndromic and Non-Syndromic Autism

Science.gov (United States)

Caglayan, Ahmet O.

2010-01-01

Aims: Over the past decade, genetic tests have become available for numerous heritable disorders, especially those whose inheritance follows the Mendelian model. Autism spectrum disorders (ASDs) represent a group of developmental disorders with a strong genetic basis. During the past few years, genetic research in ASDs has been successful in…

Core vocabulary of young children with Down syndrome.

Science.gov (United States)

Deckers, Stijn R J M; Van Zaalen, Yvonne; Van Balkom, Hans; Verhoeven, Ludo

2017-06-01

The aim of this study was to develop a core vocabulary list for young children with intellectual disabilities between 2 and 7 years of age because data from this population are lacking in core vocabulary literature. Children with Down syndrome are considered one of the most valid reference groups for researching developmental patterns in children with intellectual disabilities; therefore, spontaneous language samples of 30 Dutch children with Down syndrome were collected during three different activities with multiple communication partners (free play with parents, lunch- or snack-time at home or at school, and speech therapy sessions). Of these children, 19 used multimodal communication, primarily manual signs and speech. Functional word use in both modalities was transcribed. The 50 most frequently used core words accounted for 67.2% of total word use; 16 words comprised core vocabulary, based on commonality. These data are consistent with similar studies related to the core vocabularies of preschoolers and toddlers with typical development, although the number of nouns present on the core vocabulary list was higher for the children in the present study. This finding can be explained by manual sign use of the children with Down syndrome and is reflective of their expressive vocabulary ages.

1 Hierarchical Approaches to the Analysis of Genetic Diversity in ...

African Journals Online (AJOL)

2015-04-14

Apr 14, 2015 ... Study of genetic diversity is the process by which variation ... diversity tree is available, a core collection can be selected by .... are numerous natural factors, such as hybridization and clinical .... to develop a deeper understanding of the topic .... This can be detected by southern hybridization after running ...

Systems genetics of obesity in an F2 pig model by genome-wide association, genetic network and pathway analyses

DEFF Research Database (Denmark)

Kogelman, Lisette; Pant, Sameer Dinkar; Fredholm, Merete

2014-01-01

.g. metabolic processes. WISH networks based on genotypic correlations allowed further identification of various gene ontology terms and pathways related to obesity and related traits, which were not identified by the GWA study. In conclusion, this is the first study to develop a (genetic) obesity index...... investigations focusing on single genetic variants have achieved limited success, and the importance of including genetic interactions is becoming evident. Here, the aim was to perform an integrative genomic analysis in an F2 pig resource population that was constructed with an aim to maximize genetic variation...... of obesity-related phenotypes and genotyped using the 60K SNP chip. Firstly, Genome Wide Association (GWA) analysis was performed on the Obesity Index to locate candidate genomic regions that were further validated using combined Linkage Disequilibrium Linkage Analysis and investigated by evaluation...

PanCoreGen – profiling, detecting, annotating protein-coding genes in microbial genomes

Science.gov (United States)

Bhardwaj, Archana; Bag, Sumit K; Sokurenko, Evgeni V.

2015-01-01

A large amount of genomic data, especially from multiple isolates of a single species, has opened new vistas for microbial genomics analysis. Analyzing pan-genome (i.e. the sum of genetic repertoire) of microbial species is crucial in understanding the dynamics of molecular evolution, where virulence evolution is of major interest. Here we present PanCoreGen – a standalone application for pan- and core-genomic profiling of microbial protein-coding genes. PanCoreGen overcomes key limitations of the existing pan-genomic analysis tools, and develops an integrated annotation-structure for species-specific pan-genomic profile. It provides important new features for annotating draft genomes/contigs and detecting unidentified genes in annotated genomes. It also generates user-defined group-specific datasets within the pan-genome. Interestingly, analyzing an example-set of Salmonella genomes, we detect potential footprints of adaptive convergence of horizontally transferred genes in two human-restricted pathogenic serovars – Typhi and Paratyphi A. Overall, PanCoreGen represents a state-of-the-art tool for microbial phylogenomics and pathogenomics study. PMID:26456591

Liposarcoma or lipoma: Does genetics change classic imaging criteria?

International Nuclear Information System (INIS)

Bidault, F.; Vanel, D.; Terrier, Ph.; Jalaguier, A.; Bonvalot, S.; Pedeutour, F.; Couturier, J.M.; Dromain, C.

2009-01-01

Differentiating benign from malignant fatty tumours has always been very difficult for both radiologists and pathologists. Cytogenetic and molecular genetic analyses provide complementary tools for differentiating soft tissue tumours. Our objective was to compare imaging criteria of malignancy with a new diagnostic gold standard, namely, pathological analysis combined with cytogenetic and molecular genetic analyses. Nineteen patients with a fatty tumour were included. All had computed tomography and/or magnetic resonance imaging examination before any biopsy or surgery. All had histopathological and cytogenetic and/or molecular genetic analyses. The imaging diagnosis of benign or malignant lesions was accurate in 15 cases, with 4 false positives for malignancy. Erroneous criteria were a large size (4 cases), and a mass that was not purely fatty. In conclusion, the main pitfall for a false positive radiological diagnosis of liposarcoma is certainly a large-sized tumour. Cytogenetic and molecular genetic analyses contribute to the diagnosis and can be performed at the same time with a core biopsy.

Genetics and Forest Seed Handling

DEFF Research Database (Denmark)

Schmidt, Lars Holger

2016-01-01

High genetic quality seed is obtained from seed sources that match the planting site, have a good outcrossing rate, and are superior in some desirable characters. Non-degraded natural forests and plantations may be used as untested seed sources, which can sometimes be managed to promote outbreeding...... and increase seed production. Planted seed orchards aim at capturing large genetic variation and are planted in a design that facilitates genetic evaluation and promotes outbred seed production. Good seed production relies upon success of the whole range of reproductive events from flower differentiation...

Genetic diversity characterization of cassava cultivars (Manihot esculenta Crantz.: I RAPD markers

Directory of Open Access Journals (Sweden)

Colombo Carlos

1998-01-01

Full Text Available RAPD markers were used to investigate the genetic diversity of 31 Brazilian cassava clones. The results were compared with the genetic diversity revealed by botanical descriptors. Both sets of variates revealed identical relationships among the cultivars. Multivariate analysis of genetic similarities placed genotypes destinated for consumption "in nature" in one group, and cultivars useful for flour production in another. Brazil?s abundance of landraces presents a broad dispersion and is consequently an important resource of genetic variability. The botanical descriptors were not able to differentiate thirteen pairs of cultivars compared two-by-two, while only one was not differentiated by RAPD markers. These results showed the power of RAPD markers over botanical descriptors in studying genetic diversity, identifying duplicates, as well as validating, or improving a core collection. The latter is particularly important in this vegetatively propagated crop.

Genetic algorithm based reactive power dispatch for voltage stability improvement

Energy Technology Data Exchange (ETDEWEB)

Devaraj, D. [Department of Electrical and Electronics, Kalasalingam University, Krishnankoil 626 190 (India); Roselyn, J. Preetha [Department of Electrical and Electronics, SRM University, Kattankulathur 603 203, Chennai (India)

2010-12-15

Voltage stability assessment and control form the core function in a modern energy control centre. This paper presents an improved Genetic algorithm (GA) approach for voltage stability enhancement. The proposed technique is based on the minimization of the maximum of L-indices of load buses. Generator voltages, switchable VAR sources and transformer tap changers are used as optimization variables of this problem. The proposed approach permits the optimization variables to be represented in their natural form in the genetic population. For effective genetic processing, the crossover and mutation operators which can directly deal with the floating point numbers and integers are used. The proposed algorithm has been tested on IEEE 30-bus and IEEE 57-bus test systems and successful results have been obtained. (author)

Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements.

Science.gov (United States)

Coyne, Michael J; Roelofs, Kevin G; Comstock, Laurie E

2016-01-15

Type VI secretion systems (T6SSs) are contact-dependent antagonistic systems employed by Gram negative bacteria to intoxicate other bacteria or eukaryotic cells. T6SSs were recently discovered in a few Bacteroidetes strains, thereby extending the presence of these systems beyond Proteobacteria. The present study was designed to analyze in a global nature the diversity, abundance, and properties of T6SSs in the Bacteroidales, the most predominant Gram negative bacterial order of the human gut. By performing extensive bioinformatics analyses and creating hidden Markov models for Bacteroidales Tss proteins, we identified 130 T6SS loci in 205 human gut Bacteroidales genomes. Of the 13 core T6SS proteins of Proteobacteria, human gut Bacteroidales T6SS loci encode orthologs of nine, and an additional five other core proteins not present in Proteobacterial T6SSs. The Bacteroidales T6SS loci segregate into three distinct genetic architectures with extensive DNA identity between loci of a given genetic architecture. We found that divergent DNA regions of a genetic architecture encode numerous types of effector and immunity proteins and likely include new classes of these proteins. TheT6SS loci of genetic architecture 1 are contained on highly similar integrative conjugative elements (ICEs), as are the T6SS loci of genetic architecture 2, whereas the T6SS loci of genetic architecture 3 are not and are confined to Bacteroides fragilis. Using collections of co-resident Bacteroidales strains from human subjects, we provide evidence for the transfer of genetic architecture 1 T6SS loci among co-resident Bacteroidales species in the human gut. However, we also found that established ecosystems can harbor strains with distinct T6SS of all genetic architectures. This is the first study to comprehensively analyze of the presence and diversity of T6SS loci within an order of bacteria and to analyze T6SSs of bacteria from a natural community. These studies demonstrate that more than

Hyper-heuristic applied to nuclear reactor core design

International Nuclear Information System (INIS)

Domingos, R P; Platt, G M

2013-01-01

The design of nuclear reactors gives rises to a series of optimization problems because of the need for high efficiency, availability and maintenance of security levels. Gradient-based techniques and linear programming have been applied, as well as genetic algorithms and particle swarm optimization. The nonlinearity, multimodality and lack of knowledge about the problem domain makes de choice of suitable meta-heuristic models particularly challenging. In this work we solve the optimization problem of a nuclear reactor core design through the application of an optimal sequence of meta-heuritics created automatically. This combinatorial optimization model is known as hyper-heuristic.

Precision Medicine and Advancing Genetic Technologies—Disability and Human Rights Perspectives

Directory of Open Access Journals (Sweden)

Aisling de Paor

2016-08-01

Full Text Available Scientific and technological developments are propelling genetics and genetic technologies into the public sphere. Scientific and technological innovation is becoming more refined, resulting in an increase in the availability and use of genetic testing, and other cutting edge genetic technologies, including gene editing. These genetic advances not only signal a growing trend towards precision medicine, but also provoke consideration of the protection of genetic information as an emerging human rights concern. Particular ethical and legal issues arise from a disability perspective, including the potential for discrimination and privacy violations. In consideration of the intersection of genetics and disability, this article highlights the significant concerns raised as genetic science and technology advances, and the consequences for disability rights, particularly the core concepts of non-discrimination, and respect for diversity and difference. On examining international human rights perspectives, it looks particularly at the UN Convention on the Rights of Persons with Disabilities and how it may be used to guide best practice in this area. With an acknowledgement of historical abuses of genetic science, this article highlights the need to maintain caution as to the potential consequences of advancing genetic technologies on persons with disabilities and indeed on society as a whole.

Genetic counselling in the beta-thalassaemias

Directory of Open Access Journals (Sweden)

Adonis S. Ioannides

2013-03-01

Full Text Available The beta-thalassaemias are very important genetic disorders of haemoglobin synthesis and are amongst the commonest monogenic disorders. In view of the severity of beta-thalassaemia major, a number of screening programmes have been developed aimed at reducing the number of individuals born with the condition. Genetic counsellingplays a vital role in this process supporting the successful implementation of screening and delineating available options to at risk individuals. This review assesses the contribution of genetic counsellingat each stage of this process in the context of new diagnostic techniques and therapeutic options and discusses some of the more challenging aspects such as genotype/ phenotype correlation and coinheritance of other genetic conditions or genetic modifiers.

Effect of varying geometrical parameters of trapezoidal corrugated-core sandwich structure

Directory of Open Access Journals (Sweden)

Zaid N.Z.M.

2017-01-01

Full Text Available Sandwich structure is an attractive alternative that increasingly used in the transportation and aerospace industry. Corrugated-core with trapezoidal shape allows enhancing the damage resistance to the sandwich structure, but on the other hand, it changes the structural response of the sandwich structure. The aim of this paper is to study the effect of varying geometrical parameters of trapezoidal corrugated-core sandwich structure under compression loading. The corrugated-core specimen was fabricated using press technique, following the shape of trapezoidal shape. Two different materials were used in the study, glass fibre reinforced plastic (GFRP and carbon fibre reinforced plastic (CFRP. The result shows that the mechanical properties of the core in compression loading are sensitive to the variation of a number of unit cells and the core thickness.

Moving Away from Exhaustion: How Core Self-Evaluations Influence Academic Burnout

Science.gov (United States)

Lian, Penghu; Sun, Yunfeng; Ji, Zhigang; Li, Hanzhong; Peng, Jiaxi

2014-01-01

Background Academic burnout refers to students who have low interest, lack of motivation, and tiredness in studying. Studies concerning how to prevent academic burnout are rare. Objective The present study aimed to investigate the impact of core self-evaluations on the academic burnout of university students, and mainly focused on the confirmation of the mediator role of life satisfaction. Methods A total of 470 university students accomplished the core self-evaluation scale, Satisfaction with Life, and academic burnout scale. Results Both core self-evaluations and life satisfaction were significantly correlated with academic burnout. Structural equation modeling indicated that life satisfaction partially mediated the relationship between core self-evaluations and academic burnout. Conclusions Core self-evaluations significantly influence academic burnout and are partially mediated by life satisfaction. PMID:24489857

Moving away from exhaustion: how core self-evaluations influence academic burnout.

Directory of Open Access Journals (Sweden)

Penghu Lian

Full Text Available BACKGROUND: Academic burnout refers to students who have low interest, lack of motivation, and tiredness in studying. Studies concerning how to prevent academic burnout are rare. OBJECTIVE: The present study aimed to investigate the impact of core self-evaluations on the academic burnout of university students, and mainly focused on the confirmation of the mediator role of life satisfaction. METHODS: A total of 470 university students accomplished the core self-evaluation scale, Satisfaction with Life, and academic burnout scale. RESULTS: Both core self-evaluations and life satisfaction were significantly correlated with academic burnout. Structural equation modeling indicated that life satisfaction partially mediated the relationship between core self-evaluations and academic burnout. CONCLUSIONS: Core self-evaluations significantly influence academic burnout and are partially mediated by life satisfaction.

Core lifter

Energy Technology Data Exchange (ETDEWEB)

Pavlov, N G; Edel' man, Ya A

1981-02-15

A core lifter is suggested which contains a housing, core-clamping elements installed in the housing depressions in the form of semirings with projections on the outer surface restricting the rotation of the semirings in the housing depressions. In order to improve the strength and reliability of the core lifter, the semirings have a variable transverse section formed from the outside by the surface of the rotation body of the inner arc of the semiring aroung the rotation axis and from the inner a cylindrical surface which is concentric to the outer arc of the semiring. The core-clamping elements made in this manner have the possibility of freely rotating in the housing depressions under their own weight and from contact with the core sample. These semirings do not have weakened sections, have sufficient strength, are inserted into the limited ring section of the housing of the core lifter without reduction in its through opening and this improve the reliability of the core lifter in operation.

Genetic variants in CHI3L1 influencing YKL-40 levels

DEFF Research Database (Denmark)

Kjaergaard, Alisa D; Johansen, Julia S; Nordestgaard, Børge G

2013-01-01

Despite its important role in many serious diseases, the genetic background for plasma YKL-40 has still not been systematically catalogued. Therefore, we aimed at identifying genetic variants in CHI3L1 influencing plasma YKL-40 levels in the general population.......Despite its important role in many serious diseases, the genetic background for plasma YKL-40 has still not been systematically catalogued. Therefore, we aimed at identifying genetic variants in CHI3L1 influencing plasma YKL-40 levels in the general population....

Side core lifter

Energy Technology Data Exchange (ETDEWEB)

Edelman, Ya A

1982-01-01

A side core lifter is proposed which contains a housing with guide slits and a removable core lifter with side projections on the support section connected to the core receiver. In order to preserve the structure of the rock in the core sample by means of guaranteeing rectilinear movement of the core lifter in the rock, the support and core receiver sections are hinged. The device is equipped with a spring for angular shift in the core-reception part.

AC-600 reactor reloading pattern optimization by using genetic algorithms

International Nuclear Information System (INIS)

Wu Hongchun; Xie Zhongsheng; Yao Dong; Li Dongsheng; Zhang Zongyao

2000-01-01

The use of genetic algorithms to optimize reloading pattern of the nuclear power plant reactor is proposed. And a new encoding and translating method is given. Optimization results of minimizing core power peak and maximizing cycle length for both low-leakage and out-in loading pattern of AC-600 reactor are obtained

Searching for full power control rod patterns in a boiling water reactor using genetic algorithms

Energy Technology Data Exchange (ETDEWEB)

Montes, Jose Luis [Departamento Sistemas Nucleares, ININ, Carr. Mexico-Toluca Km. 36.5, Ocoyoacac, Edo. de Mexico (Mexico)]. E-mail: jlmt@nuclear.inin.mx; Ortiz, Juan Jose [Departamento Sistemas Nucleares, ININ, Carr. Mexico-Toluca Km. 36.5, Ocoyoacac, Edo. de Mexico (Mexico)]. E-mail: jjortiz@nuclear.inin.mx; Requena, Ignacio [Departamento Ciencias Computacion e I.A. ETSII, Informatica, Universidad de Granada, C. Daniel Saucedo Aranda s/n. 18071 Granada (Spain)]. E-mail: requena@decsai.ugr.es; Perusquia, Raul [Departamento Sistemas Nucleares, ININ, Carr. Mexico-Toluca Km. 36.5, Ocoyoacac, Edo. de Mexico (Mexico)]. E-mail: rpc@nuclear.inin.mx

2004-11-01

One of the most important questions related to both safety and economic aspects in a nuclear power reactor operation, is without any doubt its reactivity control. During normal operation of a boiling water reactor, the reactivity control of its core is strongly determined by control rods patterns efficiency. In this paper, GACRP system is proposed based on the concepts of genetic algorithms for full power control rod patterns search. This system was carried out using LVNPP transition cycle characteristics, being applied too to an equilibrium cycle. Several operation scenarios, including core water flow variation throughout the cycle and different target axial power distributions, are considered. Genetic algorithm fitness function includes reactor security parameters, such as MLHGR, MCPR, reactor k{sub eff} and axial power density.

Core mechanics and configuration behavior of advanced LMFBR core restraint concepts

International Nuclear Information System (INIS)

Fox, J.N.; Wei, B.C.

1978-02-01

Core restraint systems in LMFBRs maintain control of core mechanics and configuration behavior. Core restraint design is complex due to the close spacing between adjacent components, flux and temperature gradients, and irradiation-induced material property effects. Since the core assemblies interact with each other and transmit loads directly to the core restraint structural members, the core assemblies themselves are an integral part of the core restraint system. This paper presents an assessment of several advanced core restraint system and core assembly concepts relative to the expected performance of currently accepted designs. A recommended order for the development of the advanced concepts is also presented

Ancient Biomolecules from Deep Ice Cores Reveal a Forested Southern Greenland

Science.gov (United States)

Willerslev, Eske; Cappellini, Enrico; Boomsma, Wouter; Nielsen, Rasmus; Hebsgaard, Martin B.; Brand, Tina B.; Hofreiter, Michael; Bunce, Michael; Poinar, Hendrik N.; Dahl-Jensen, Dorthe; Johnsen, Sigfus; Steffensen, Jørgen Peder; Bennike, Ole; Schwenninger, Jean-Luc; Nathan, Roger; Armitage, Simon; de Hoog, Cees-Jan; Alfimov, Vasily; Christl, Marcus; Beer, Juerg; Muscheler, Raimund; Barker, Joel; Sharp, Martin; Penkman, Kirsty E.H.; Haile, James; Taberlet, Pierre; Gilbert, M. Thomas P.; Casoli, Antonella; Campani, Elisa; Collins, Matthew J.

2009-01-01

One of the major difficulties in paleontology is the acquisition of fossil data from the 10% of Earth’s terrestrial surface that is covered by thick glaciers and ice sheets. Here we reveal that DNA and amino acids from buried organisms can be recovered from the basal sections of deep ice cores and allow reconstructions of past flora and fauna. We show that high altitude southern Greenland, currently lying below more than two kilometers of ice, was once inhabited by a diverse array of conifer trees and insects that may date back more than 450 thousand years. The results provide the first direct evidence in support of a forested southern Greenland and suggest that many deep ice cores may contain genetic records of paleoenvironments in their basal sections. PMID:17615355

Genetic engineering versus natural evolution: Genetic algorithms with deterministic operators

NARCIS (Netherlands)

Jozwiak, L.; Postula, A.

2002-01-01

Genetic algorithms (GA) have several important features that predestine them to solve design problems. Their main disadvantage however is the excessively long run-time that is needed to deliver satisfactory results for large instances of complex design problems. The main aims of this paper are (1)

The use of genetic algorithms with niching methods in nuclear reactor related problems

International Nuclear Information System (INIS)

Sacco, Wagner Figueiredo

2000-03-01

Genetic Algorithms (GAs) are biologically motivated adaptive systems which have been used, with good results, in function optimization. However, traditional GAs rapidly push an artificial population toward convergence. That is, all individuals in the population soon become nearly identical. Niching Methods allow genetic algorithms to maintain a population of diverse individuals. GAs that incorporate these methods are capable of locating multiple, optimal solutions within a single population. The purpose of this study is to test existing niching techniques and two methods introduced herein, bearing in mind their eventual application in nuclear reactor related problems, specially the nuclear reactor core reload one, which has multiple solutions. Tests are performed using widely known test functions and their results show that the new methods are quite promising, specially in real world problems like the nuclear reactor core reload. (author)

Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape

Science.gov (United States)

2013-01-01

Background The economic importance of grapevine has driven significant efforts in genomics to accelerate the exploitation of Vitis resources for development of new cultivars. However, although a large number of clonally propagated accessions are maintained in grape germplasm collections worldwide, their use for crop improvement is limited by the scarcity of information on genetic diversity, population structure and proper phenotypic assessment. The identification of representative and manageable subset of accessions would facilitate access to the diversity available in large collections. A genome-wide germplasm characterization using molecular markers can offer reliable tools for adjusting the quality and representativeness of such core samples. Results We investigated patterns of molecular diversity at 22 common microsatellite loci and 384 single nucleotide polymorphisms (SNPs) in 2273 accessions of domesticated grapevine V. vinifera ssp. sativa, its wild relative V. vinifera ssp. sylvestris, interspecific hybrid cultivars and rootstocks. Despite the large number of putative duplicates and extensive clonal relationships among the accessions, we observed high level of genetic variation. In the total germplasm collection the average genetic diversity, as quantified by the expected heterozygosity, was higher for SSR loci (0.81) than for SNPs (0.34). The analysis of the genetic structure in the grape germplasm collection revealed several levels of stratification. The primary division was between accessions of V. vinifera and non-vinifera, followed by the distinction between wild and domesticated grapevine. Intra-specific subgroups were detected within cultivated grapevine representing different eco-geographic groups. The comparison of a phenological core collection and genetic core collections showed that the latter retained more genetic diversity, while maintaining a similar phenotypic variability. Conclusions The comprehensive molecular characterization of our grape

Establishment of computer aided technology for operation, maintenance, and core management

International Nuclear Information System (INIS)

Iguchi, Masaki; Isomura, Kazutoshi; Okawa, Tsuyoshi; Sakurai, Naoto

2003-01-01

In Fugen, the accumulated know-how of skilled operators, maintenance engineers, and core management engineers have been systematized by using the latest computer technology. These computerized systems have enhanced the technology of operating, maintenance and core management. This report describes the development of a reactor feed water control system with fuzzy logic, a refueling support system, and an automatic refueling planning system. Since operation of reactor feedwater control at low power requires a delicate operational technique and the knowledge and experience of operators, the application of a fuzzy algorithm was deemed effective in Fugen. Its good performance comparable to that of experienced operators can be realized. The fuel-handling operation takes proposed plans, fuel management and efficient operation by skilled operators. AI technology was applied to fuel-handling support system using past operation results and experience of skilled operators. This system is as capable of fuel-handling as skilled operators. Planning an adequate fuel loading pattern is time-consuming even for expert core management engineers. The Automatic Refueling Planning System (ARPS) was developed using Genetic Algorithms (GA) and a Simulated Annealing (SA). It has been verified that long-term fuel loading patterns of the Fugen NPS evaluated by ARPS are equivalent to that of an expert core management engineer. (author)

Diverse plant and animal genetic records from Holocene and Pleistocene sediments

DEFF Research Database (Denmark)

Willerslev, E.; Hansen, Anders J.; Binladen, J.

2003-01-01

Genetic analyses of permafrost and temperate sediments reveal that plant and animal DNA may be preserved for long periods, even in the absence of obvious macrofossils. In Siberia, five permafrost cores ranging from 400,000 to 10,000 years old contained at least 19 different plant taxa, including...... the oldest authenticated ancient DNA sequences known, and megafaunal sequences including mammoth, bison, and horse. The genetic data record a number of dramatic changes in the taxonomic diversity and composition of Beringian vegetation and fauna. Temperate cave sediments in New Zealand also yielded DNA...

Application of genetic algorithm in the fuel management optimization for the high flux engineering test reactor

International Nuclear Information System (INIS)

Shi Xueming; Wu Hongchun; Sun Shouhua; Liu Shuiqing

2003-01-01

The in-core fuel management optimization model based on the genetic algorithm has been established. An encode/decode technique based on the assemblies position is presented according to the characteristics of HFETR. Different reproduction strategies have been studied. The expert knowledge and the adaptive genetic algorithms are incorporated into the code to get the optimized loading patterns that can be used in HFETR

Hundred years of genetic structure in a sediment revived diatom population

DEFF Research Database (Denmark)

Haernstroem, Karolina; Ellegaard, Marianne; Andersen, Thorbjørn Joest

2011-01-01

This paper presents research on the genetic structure and diversity of populations of a common marine protist and their changes over time. The bloom-forming diatom Skeletonema marinoi was used as a model organism. Strains were revived from anoxic discrete layers of a 210Pb-dated sediment core...

Disability training in the genetic counseling curricula: bridging the gap between genetic counselors and the disability community.

Science.gov (United States)

Sanborn, Erica; Patterson, Annette R

2014-08-01

Over the past two decades, disability activists, ethicists, and genetic counselors have examined the moral complexities inherent in prenatal genetic counseling and considered whether and in what ways genetic counseling may negatively affect individuals in the disability community. Many have expressed concerns about defining disability in the context of prenatal decision-making, as the definition presented may influence prenatal choices. In the past few years, publications have begun to explore the responsibility of counselors in presenting a balanced view of disability and have questioned the preparedness of counselors for this duty. Currently, the Accreditation Council for Genetic Counseling (ACGC) only minimally includes disability training in their competencies for genetic counselors, and in their accreditation requirements for training programs. In an attempt to describe current practice, this article details two studies that assess disability training in ABGC-accredited genetic counseling programs. Results from these studies demonstrate that experience with disability is not required by the majority of programs prior to matriculation. Though most program directors agree on the importance of including disability training in the curriculum, there is wide variability in the amount and types of training students receive. Hours dedicated to disability exposure among programs ranged from 10 to 600 hours. Eighty-five percent of program directors surveyed agree that skills for addressing disability should be added to the core competencies. Establishing a set of disability competencies would help to ensure that all graduates have the skills necessary to provide patients with an accurate understanding of disability that facilitates informed decision-making. © 2014 Wiley Periodicals, Inc.

Experimentation of a fixed in-core-based system for core limiting conditions of operation (LCO) monitoring

International Nuclear Information System (INIS)

Piguet, F.; Carrasco, M.; Mourlevat, J.L.; Rio, G.; Verneret, C.

2006-01-01

In order to comply with the needs of Utilities for improvements in the economic competitiveness of nuclear energy, one of the solutions proposed is to reduce the cost of the fuel cycle. To this aim, increasing the lifetime of cycles by introducing so-called 'low leakage' fuel loading patterns to the reactor is a rather promising solution. However, these loading patterns lead to an increase in the core hotspot factors and therefore to a reduction in the operating margins with respect to the core operating limits also called 'Limiting Conditions of Operations (LCO)'. For many years FRAMATOME-ANP has developed and proposed solutions aiming at increasing and therefore restoring these margins, namely: the improvement in design methods based on three-dimensional modelling of the core, on kinetic representation of transients and on neutron-thermohydraulic coupling or the improvement in the fuel with the introduction of intermediate grids. A complementary approach is to improve the core instrumentation associated with the system for monitoring the core operating margins to the LCO thresholds. The core operating limits monitoring function calls on real-time knowledge of the current power distribution in the core. If we take the French 1300 MWe units as an example, this knowledge is based on the measurement of the mean axial power distribution made by six sections neutron detectors, located outside the pressure vessel and equipped with a fast neutron filtering device. The results of this measurement are combined with pre-tabulated radial hotspot factors (Fxy), in order to calculate the total hotspot factor (FQ) of the core, the minimum Departure from Nucleate Boiling Ratio (DNBR) and, consequently, the margins with respect to the core operating limits. The limitations of a measurement made outside the vessel, and those of the 1D/2D modelling adopted, mean that these margins calculations have a high potential for improving the level of their accuracy. This is the reason why

Core attitudes of professionals in palliative care: a qualitative study.

Science.gov (United States)

Simon, Steffen T; Ramsenthaler, Christina; Bausewein, Claudia; Krischke, Norbert; Geiss, Gerlinde

2009-08-01

Self-awareness of one's own reactions towards patients and their relatives is of paramount importance for all professionals in palliative care. 'Core attitude' describes the way in which a person perceives himself and the world, and forms the basis for his actions and thoughts. The aim of this study is to explore what core attitude means for palliative care professionals and whether there is a specific core attitude in palliative care. Qualitative study with 10 face-to-face in-depth interviews with experts in palliative care (nurses, physicians, social workers, psychologists, chaplain) in Germany. Core attitude in palliative care can be best described with the following three domains: 1) personal characteristics; 2) experience of care; and 3) competence in care. Authenticity is the most important characteristic of professionals, along with honesty and mindfulness. Core attitude primarily becomes apparent in the relationship with the patient. Perception and listening are key competences. The experts emphasized the universality of the core attitude in the care of ill people. They stressed the importance and relevance of teaching core attitudes in palliative care education. In the field of palliative care, core attitude consists predominately of authenticity, manifests itself in relationships, and requires a high degree of perceptiveness.

A core syllabus for the teaching of neuroanatomy to medical students.

Science.gov (United States)

Moxham, Bernard; McHanwell, Stephen; Plaisant, Odile; Pais, Diogo

2015-09-01

There is increasingly a call for clinical relevance in the teaching of biomedical sciences within all health care courses. However, this presupposes that there is a clear understanding of what can be considered core material within the curricula. To date, the anatomical sciences have been relatively poorly served by the development of core syllabuses, particularly for specialized core syllabuses such as neuroanatomy. One of the aims of the International Federation of Associations of Anatomists (IFAA) and of the European Federation for Experimental Morphology (EFEM) is to formulate, on an international scale, core syllabuses for all branches of the anatomical sciences using Delphi Panels consisting of anatomists, scientists, and clinicians to initially evaluate syllabus content. In this article, the findings of a Delphi Panel for neuroanatomy are provided. These findings will subsequently be published on the IFAA website to enable anatomical (and other cognate learned) societies and individual anatomists, clinicians, and students to freely comment upon, and elaborate and amend, the syllabuses. The aim is to set internationally recognized standards and thus to provide guidelines concerning neuroanatomical knowledge when engaged in course development. © 2015 Wiley Periodicals, Inc.

Applying genetics in inflammatory disease drug discovery

DEFF Research Database (Denmark)

Folkersen, Lasse; Biswas, Shameek; Frederiksen, Klaus Stensgaard

2015-01-01

, with several notable exceptions, the journey from a small-effect genetic variant to a functional drug has proven arduous, and few examples of actual contributions to drug discovery exist. Here, we discuss novel approaches of overcoming this hurdle by using instead public genetics resources as a pragmatic guide...... alongside existing drug discovery methods. Our aim is to evaluate human genetic confidence as a rationale for drug target selection....

Genetically Modified Products – Contradictions and Challenges

OpenAIRE

Rodica Pamfilie; Lavinia-Alexandra Cristescu

2011-01-01

This paper aims to identify the perception that consumers have about GM products, also taking into consideration the evolution of consumption and production of products based on genetically modified organisms. Therefore, the paper presents both aspects to clarify the concept of genetically modified organism (GMO issues such as typology, national or international regulations regarding this area) and global market development of genetically modified organisms, evolution which is presented by st...

Genetic Parameters of Common Wheat in Nepal

OpenAIRE

Bal Krishna Joshi; Dhruba Bahadur Thapa; Madan Raj Bhatta

2015-01-01

Knowledge on variation within traits and their genetics are prerequisites in crop improvement program. Thus, in present paper we aimed to estimate genetic and environmental indices of common wheat genotypes. For the purpose, eight quantitative traits were measured from 30 wheat genotypes, which were in randomized complete block design with 3 replicates. Components of variance and covariance were estimated along with heritability, genetic gain, realized heritability, coheritability and correla...

Genetics of hereditary neurological disorders in children.

Science.gov (United States)

Huang, Yue; Yu, Sui; Wu, Zhanhe; Tang, Beisha

2014-04-01

Hereditary neurological disorders (HNDs) are relatively common in children compared to those occurring in adulthood. Recognising clinical manifestations of HNDs is important for the selection of genetic testing, genetic testing results interpretation, and genetic consultation. Meanwhile, advances in next generation sequencing (NGS) technologies have significantly enabled the discovery of genetic causes of HNDs and also challenge paediatricians on applying genetic investigation. Combination of both clinical information and advanced technologies will enhance the genetic test yields in clinical setting. This review summarises the clinical presentations as well as genetic causes of paediatric neurological disorders in four major areas including movement disorders, neuropsychiatric disorders, neuron peripheral disorders and epilepsy. The aim of this review is to help paediatric neurologists not only to see the clinical features but also the complex genetic aspect of HNDs in order to utilise genetic investigation confidently in their clinical practice. A smooth transition from research based to clinical use of comprehensive genetic testing in HNDs in children could be foreseen in the near future while genetic testing, genetic counselling and genetic data interpretation are in place appropriately.

Comparison of facility characteristics between SCTF Core-I and Core-II

International Nuclear Information System (INIS)

Adachi, Hiromichi; Iwamura, Takamichi; Sobajima, Makoto; Ohnuki, Akira; Abe, Yutaka; Murao, Yoshio.

1990-08-01

The Slab Core Test Facility (SCTF) was constructed to investigate two-dimensional thermal-hydraulics in the core and fluid behavior of carryover water out of the core including its feed-back effect to the core behavior mainly during the reflood phase of a large break loss-of-coolant accident (LOCA) of a pressurized water reactor (PWR). Since three simulated cores are used in the SCTF Test Program and the design of these three cores are slightly different one by one, repeatability test is required to justify a direct comparison of data obtained with different cores. In the present report, data of Test S2-13 (Run 618) obtained with SCTF Core-II were compared with those of Test S1-05 (Run 511) obtained with the Core-I, which were performed under the forced-flooding condition. Thermal-hydraulic behaviors in these two tests showed quite similar characteristics of both system behavior and two-dimensional core behaviors. Therefore, the test data obtained from the two cores can be compared directly with each other. After the turnaround of clad temperatures, however, some differences were found in upper plenum water accumulation and resultant two-dimensional core cooling behaviors such as quench front propagation from bottom to top of the core. (author)

Analysis of impurity effect on Silicide fuels of the RSG-GAS core

International Nuclear Information System (INIS)

Tukiran-Surbakti

2003-01-01

Simulation of impurity effect on silicide fuel of the RSG-GAS core has been done. The aim of this research is to know impurity effect of the U-234 and U-236 isotopes in the silicide fuels on the core criticality. The silicide fuels of 250 g U loading and 19.75 of enrichment is used in this simulation. Cross section constant of fuels and non-structure material of core are generated by WIMSD/4 computer code, meanwhile impurity concentration was arranged from 0.01% to 2%. From the result of analysis can be concluded that the isotopes impurity in the fuels could make trouble in the core and the core can not be operated at critical after a half of its cycle length (350 MW D)

Unifying diseases from a genetic point of view: the example of the genetic theory of infectious diseases.

Science.gov (United States)

Darrason, Marie

2013-08-01

In the contemporary biomedical literature, every disease is considered genetic. This extension of the concept of genetic disease is usually interpreted either in a trivial or genocentrist sense, but it is never taken seriously as the expression of a genetic theory of disease. However, a group of French researchers defend the idea of a genetic theory of infectious diseases. By identifying four common genetic mechanisms (Mendelian predisposition to multiple infections, Mendelian predisposition to one infection, and major gene and polygenic predispositions), they attempt to unify infectious diseases from a genetic point of view. In this article, I analyze this explicit example of a genetic theory, which relies on mechanisms and is applied only to a specific category of diseases, what we call "a regional genetic theory." I have three aims: to prove that a genetic theory of disease can be devoid of genocentrism, to consider the possibility of a genetic theory applied to every disease, and to introduce two hypotheses about the form that such a genetic theory could take by distinguishing between a genetic theory of diseases and a genetic theory of Disease. Finally, I suggest that network medicine could be an interesting framework for a genetic theory of Disease.

Networking in Autism: Leveraging Genetic, Biomarker and Model System Findings in the Search for New Treatments

OpenAIRE

Veenstra-VanderWeele, Jeremy; Blakely, Randy D

2011-01-01

Autism Spectrum Disorder (ASD) is a common neurodevelopmental disorder affecting approximately 1% of children. ASD is defined by core symptoms in two domains: negative symptoms of impairment in social and communication function, and positive symptoms of restricted and repetitive behaviors. Available treatments are inadequate for treating both core symptoms and associated conditions. Twin studies indicate that ASD susceptibility has a large heritable component. Genetic studies have identified ...

Reproductive cloning combined with genetic modification.

Science.gov (United States)

Strong, C

2005-11-01

Although there is widespread opposition to reproductive cloning, some have argued that its use by infertile couples to have genetically related children would be ethically justifiable. Others have suggested that lesbian or gay couples might wish to use cloning to have genetically related children. Most of the main objections to human reproductive cloning are based on the child's lack of unique nuclear DNA. In the future, it may be possible safely to create children using cloning combined with genetic modifications, so that they have unique nuclear DNA. The genetic modifications could be aimed at giving such children genetic characteristics of both members of the couple concerned. Thus, cloning combined with genetic modification could be appealing to infertile, lesbian, or gay couples who seek genetically related children who have genetic characteristics of both members. In such scenarios, the various objections to human reproductive cloning that are based on the lack of genetic uniqueness would no longer be applicable. The author argues that it would be ethically justifiable for such couples to create children in this manner, assuming these techniques could be used safely.

Temporal Change of Seismic Earth's Inner Core Phases: Inner Core Differential Rotation Or Temporal Change of Inner Core Surface?

Science.gov (United States)

Yao, J.; Tian, D.; Sun, L.; Wen, L.

2017-12-01

Since Song and Richards [1996] first reported seismic evidence for temporal change of PKIKP wave (a compressional wave refracted in the inner core) and proposed inner core differential rotation as its explanation, it has generated enormous interests in the scientific community and the public, and has motivated many studies on the implications of the inner core differential rotation. However, since Wen [2006] reported seismic evidence for temporal change of PKiKP wave (a compressional wave reflected from the inner core boundary) that requires temporal change of inner core surface, both interpretations for the temporal change of inner core phases have existed, i.e., inner core rotation and temporal change of inner core surface. In this study, we discuss the issue of the interpretation of the observed temporal changes of those inner core phases and conclude that inner core differential rotation is not only not required but also in contradiction with three lines of seismic evidence from global repeating earthquakes. Firstly, inner core differential rotation provides an implausible explanation for a disappearing inner core scatterer between a doublet in South Sandwich Islands (SSI), which is located to be beneath northern Brazil based on PKIKP and PKiKP coda waves of the earlier event of the doublet. Secondly, temporal change of PKIKP and its coda waves among a cluster in SSI is inconsistent with the interpretation of inner core differential rotation, with one set of the data requiring inner core rotation and the other requiring non-rotation. Thirdly, it's not reasonable to invoke inner core differential rotation to explain travel time change of PKiKP waves in a very small time scale (several months), which is observed for repeating earthquakes in Middle America subduction zone. On the other hand, temporal change of inner core surface could provide a consistent explanation for all the observed temporal changes of PKIKP and PKiKP and their coda waves. We conclude that

Fe-based nanocrystalline powder cores with ultra-low core loss

Energy Technology Data Exchange (ETDEWEB)

Wang, Xiangyue, E-mail: wangxiangyue1986@163.com [China Iron and Steel Research Institute Group, Beijing 100081 (China); Center of Advanced Technology and Materials Co., Ltd., Beijing 100081 (China); Lu, Zhichao; Lu, Caowei; Li, Deren [China Iron and Steel Research Institute Group, Beijing 100081 (China); Center of Advanced Technology and Materials Co., Ltd., Beijing 100081 (China)

2013-12-15

Melt-spun amorphous Fe{sub 73.5}Cu{sub 1}Nb{sub 3}Si{sub 15.5}B{sub 7} alloy strip was crushed to make flake-shaped fine powders. The passivated powders by phosphoric acid were mixed with organic and inorganic binder, followed by cold compaction to form toroid-shaped bonded powder-metallurgical magnets. The powder cores were heat-treated to crystallize the amorphous structure and to control the nano-grain structure. Well-coated phosphate-oxide insulation layer on the powder surface decreased the the core loss with the insulation of each powder. FeCuNbSiB nanocrystalline alloy powder core prepared from the powder having phosphate-oxide layer exhibits a stable permeability up to high frequency range over 2 MHz. Especially, the core loss could be reduced remarkably. At the other hand, the softened inorganic binder in the annealing process could effectively improve the intensity of powder cores. - Highlights: • Fe-based nanocrystalline powder cores were prepared with low core loss. • Well-coated phosphate-oxide insulation layer on the powder surface decreased the core loss. • Fe-based nanocrystalline powder cores exhibited a stable permeability up to high frequency range over 2 MHz. • The softened inorganic binder in the annealing process could effectively improve the intensity of powder cores.

High moderation MOX cores for effective use of plutonium in LWRs

International Nuclear Information System (INIS)

Hamamoto, Kazuko; Kanagawa, Takashi; Hiraiwa, Koji; Sakurada, Koichi; Moriwaki, Masanao; Aoyama, Motoo; Yamamoto, Toru; Ueji, Masao

2001-01-01

Conceptual design studies have been performed for high moderation full MOX cores aiming at increasing fissile Pu consumption rate (ratio of the consumed to the loaded fissile Pu) and reducing residual Pu in discharged MOX fuel. The BWR cores studied have hydrogen to heavy metal ratio(H/HM) of 5.9 with increasing water rods and 7.0 with reducing a fuel rod diameter based on a reference 9x9 fuel (H/HM=4.9) of ABWR. The PWR cores studied have H/HM of 5.0 and 6.0 with reducing a fuel rod diameter based on a reference 17x17 fuel (H/HM=4.0) of APWR. Equilibrium core design and plant safety analyses showed that those high moderation cores have compatibility with ABWR and APWR. The fissile Pu consumption rate is 22% larger than the full MOX cores with reference fuel of ABWR and 50% for APWR. The core performance and compatibility has been also evaluated in the condition of multi-recycle of Pu in these high moderation cores. Study has been conducted to evaluate the effect of introducing these high moderation cores in the fuel cycle of Japan. It shows that the high moderation cores produce 26% more cumulative electricity and reduce 22% stock of the fissile Pu by 2050 than the reference cores. (author)

In-core Instrument Subcritical Verification (INCISV) - Core Design Verification Method - 358

International Nuclear Information System (INIS)

Prible, M.C.; Heibel, M.D.; Conner, S.L.; Sebastiani, P.J.; Kistler, D.P.

2010-01-01

According to the standard on reload startup physics testing, ANSI/ANS 19.6.1, a plant must verify that the constructed core behaves sufficiently close to the designed core to confirm that the various safety analyses bound the actual behavior of the plant. A large portion of this verification must occur before the reactor operates at power. The INCISV Core Design Verification Method uses the unique characteristics of a Westinghouse Electric Company fixed in-core self powered detector design to perform core design verification after a core reload before power operation. A Vanadium self powered detector that spans the length of the active fuel region is capable of confirming the required core characteristics prior to power ascension; reactivity balance, shutdown margin, temperature coefficient and power distribution. Using a detector element that spans the length of the active fuel region inside the core provides a signal of total integrated flux. Measuring the integrated flux distributions and changes at various rodded conditions and plant temperatures, and comparing them to predicted flux levels, validates all core necessary core design characteristics. INCISV eliminates the dependence on various corrections and assumptions between the ex-core detectors and the core for traditional physics testing programs. This program also eliminates the need for special rod maneuvers which are infrequently performed by plant operators during typical core design verification testing and allows for safer startup activities. (authors)

Engaging nurses in genetics: the strategic approach of the NHS National Genetics Education and Development Centre.

Science.gov (United States)

Kirk, Maggie; Tonkin, Emma; Burke, Sarah

2008-04-01

The UK government announced the establishment of an NHS National Genetics Education and Development Centre in its Genetics White Paper. The Centre aims to lead and coordinate developments to enhance genetics literacy of health professionals. The nursing program takes a strategic approach based on Ajzen's Theory of Planned Behavior, using the UK nursing genetics competences as the platform for development. The program team uses innovative approaches to raise awareness of the relevance of genetics, working collaboratively with policy stakeholders, as key agents of change in promoting competence. Providing practical help in preparing learning and teaching resources lends further encouragement. Evaluation of the program is dependent on gathering baseline data, and the program has been informed by an education needs analysis. The challenges faced are substantial and necessitate international collaboration where expertise and resources can be shared to produce a global system of influence to facilitate the engagement of non-genetic nurses.

Volatile Compound Profiling by HS-SPME/GC-MS-FID of a Core Olive Cultivar Collection as a Tool for Aroma Improvement of Virgin Olive Oil

Directory of Open Access Journals (Sweden)

Lourdes García-Vico

2017-01-01

Full Text Available Virgin olive oil (VOO is the only food product requiring official sensory analysis to be classified in commercial categories, in which the evaluation of the aroma plays a very important role. The selection of parents, with the aim of obtaining new cultivars with improved oil aroma, is of paramount importance in olive breeding programs. We have assessed the volatile fraction by headspace-solid-phase microextraction/gas chromatography-mass spectrometry-flame ionization detection (HS-SPME/GC-MS-FID and the deduced aroma properties of VOO from a core set of olive cultivars (Core-36 which possesses most of the genetic diversity found in the World Olive Germplasm Collection (IFAPA Alameda del Obispo located in Cordoba, Spain. The VOO volatile fractions of Core-36 cultivars display a high level of variability. It is mostly made of compounds produced from polyunsaturated fatty acids through the lipoxygenase pathway, which confirms to be a general characteristic of the olive species (Olea europaea L.. The main group of volatile compounds in the oils was six straight-chain carbon compounds derived from linolenic acid, some of them being the main contributors to the aroma of the olive oils according to their odor activity values (OAV. The high level of variability found for the volatile fraction of the oils from Core-36 and, therefore, for the aroma odor notes, suggest that this core set may be a very useful tool for the choice of optimal parents in olive breeding programs in order to raise new cultivars with improved VOO aroma.

Volatile Compound Profiling by HS-SPME/GC-MS-FID of a Core Olive Cultivar Collection as a Tool for Aroma Improvement of Virgin Olive Oil.

Science.gov (United States)

García-Vico, Lourdes; Belaj, Angjelina; Sánchez-Ortiz, Araceli; Martínez-Rivas, José M; Pérez, Ana G; Sanz, Carlos

2017-01-14

Virgin olive oil (VOO) is the only food product requiring official sensory analysis to be classified in commercial categories, in which the evaluation of the aroma plays a very important role. The selection of parents, with the aim of obtaining new cultivars with improved oil aroma, is of paramount importance in olive breeding programs. We have assessed the volatile fraction by headspace-solid-phase microextraction/gas chromatography-mass spectrometry-flame ionization detection (HS-SPME/GC-MS-FID) and the deduced aroma properties of VOO from a core set of olive cultivars (Core-36) which possesses most of the genetic diversity found in the World Olive Germplasm Collection (IFAPA Alameda del Obispo) located in Cordoba, Spain. The VOO volatile fractions of Core-36 cultivars display a high level of variability. It is mostly made of compounds produced from polyunsaturated fatty acids through the lipoxygenase pathway, which confirms to be a general characteristic of the olive species ( Olea europaea L.). The main group of volatile compounds in the oils was six straight-chain carbon compounds derived from linolenic acid, some of them being the main contributors to the aroma of the olive oils according to their odor activity values (OAV). The high level of variability found for the volatile fraction of the oils from Core-36 and, therefore, for the aroma odor notes, suggest that this core set may be a very useful tool for the choice of optimal parents in olive breeding programs in order to raise new cultivars with improved VOO aroma.

Genetic divergence of roundup ready (RR) soybean cultivars ...

African Journals Online (AJOL)

The aim of this study was to estimate the genetic diversity in 74 RR soybean cultivars from different Brazilian breeding programs. ... chosen SSR markers were effective in assessing the genetic diversity among genotypes, besides proving to be ...

Density Anomalies in the Mantle and the Gravitational Core-Mantle Interaction

Science.gov (United States)

Kuang, Weijia; Liu, Lanbo

2003-01-01

Seismic studies suggest that the bulk of the mantle is heterogeneous, with density variations in depth as well as in horizontal directions (latitude and longitude). This density variation produces a three- dimensional gravity field throughout the Earth. On the other hand, the core density also varies in both time and space, due to convective core flow. Consequently, the fluid outer core and the solid mantle interact gravitationally due to the mass anomalies in both regions. This gravitational core-mantle interaction could play a significant role in exchange of angular momentum between the core and the mantle, and thus the change in Earth's rotation on time scales of decades and longer. Aiming at estimating the significance of the gravitational core-mantle interaction on Earth's rotation variation, we introduce in our MoSST core dynamics model a heterogeneous mantle, with a density distribution derived from seismic results. In this model, the core convection is driven by the buoyancy forces. And the density variation is determined dynamically with the convection. Numerical simulation is carried out with different parameter values, intending to extrapolate numerical results for geophysical implications.

Waves in the core and mechanical core-mantle interactions

DEFF Research Database (Denmark)

Jault, D.; Finlay, Chris

2015-01-01

This Chapter focuses on time-dependent uid motions in the core interior, which can beconstrained by observations of the Earth's magnetic eld, on timescales which are shortcompared to the magnetic diusion time. This dynamics is strongly inuenced by the Earth's rapid rotation, which rigidies...... the motions in the direction parallel to the Earth'srotation axis. This property accounts for the signicance of the core-mantle topography.In addition, the stiening of the uid in the direction parallel to the rotation axis gives riseto a magnetic diusion layer attached to the core-mantle boundary, which would...... otherwisebe dispersed by Alfven waves. This Chapter complements the descriptions of large-scaleow in the core (8.04), of turbulence in the core (8.06) and of core-mantle interactions(8.12), which can all be found in this volume. We rely on basic magnetohydrodynamictheory, including the derivation...

A core design study for 'zero-sodium-void-worth' cores

International Nuclear Information System (INIS)

Kawashima, Masatoshi; Suzuki, Masao; Hill, R.N.

1992-01-01

Recently, a number of low sodium-void-worth metal-fueled core design concepts have been proposed; to provide for flexibility in transuranic nuclide management strategy, core designs which exhibit a wide range of breeding characteristics have been developed. Two core concepts, a flat annular (transuranic burning) core and an absorber-type parfait (transuranic self-sufficient) core, are selected for this study. In this paper, the excess reactivity management schemes applied in the two designs are investigated in detail. In addition, the transient effect of reactivity insertions on the parfait core design is assessed. The upper and lower core regions in the parfait design are neutronically decoupled; however, the common coolant channel creates thermalhydraulic coupling. This combination of neutronic and thermalhydraulic characteristics leads to unique behavior in anticipated transient overpower events. (author)

LMFBR core flowering response to an impulse load

International Nuclear Information System (INIS)

Brochard, D.; Petret, J.C.; Queval, J.C.; Gibert, R.J.

1993-01-01

Some incidental situations like MFCI (Meeting Fuel Coolant Incident) may induce a core flowering and lead to consider impulse loans applied to LMFBR core. These highly dynamic loads are very different considering their spatial repartition and their frequency content from the seismic loads which have been deeply studied. Recently, tests have been performed on the LMFBR core mock-up RAPSODIE in order to validate the calculation methods for centered impulse load. These tests consist in injecting water quickly in the mock-up through a specific device replacing the core central assembly. The influence of the injection pressure and the influence of the injection axial position have been investigate. During the tests, the top displacements of some assemblies have been measured. The aim of this paper is first to present the experimental device and the test results. Then a non linear numerical model is described; this model includes the impact between subassemblies and is based on an homogenization method allowing to take into account with accuracy the fluid structure interaction.The comparisons between calculation results an test results will finally be presented

Sodium, Iodine and Bromine in Polar Ice Cores

DEFF Research Database (Denmark)

Maffezzoli, Niccolo

Abstract: This research focuses on sodium, bromine and iodine in polar ice cores, with the aim of reviewing and advancing their current understanding with additional measurements and records, and investigating the connections of these tracers with sea ice and their feasibility as sea ice indicators...... with a description of the main analytic al techniques used to measure ionic and elemental species in ice cores. Chapter 4 introduces sodium, bromine and iodine with a theoretical perspective and a particular focus on their connections with sea ice. Some of the physical and chemical properties that are believed...... back trajectory analyses of the past 17 years. The results identify the aerosol source area influencing the Renland ice cap, a result necessary for the interpretation of impurity records obtained from the ice core. Chapter 6 reviews the published ice/snow measurements of bromine and iodine at polar...

k-core covers and the core

NARCIS (Netherlands)

Sanchez-Rodriguez, E.; Borm, Peter; Estevez-Fernandez, A.; Fiestras-Janeiro, G.; Mosquera, M.A.

This paper extends the notion of individual minimal rights for a transferable utility game (TU-game) to coalitional minimal rights using minimal balanced families of a specific type, thus defining a corresponding minimal rights game. It is shown that the core of a TU-game coincides with the core of

Automated Core Design

International Nuclear Information System (INIS)

Kobayashi, Yoko; Aiyoshi, Eitaro

2005-01-01

Multistate searching methods are a subfield of distributed artificial intelligence that aims to provide both principles for construction of complex systems involving multiple states and mechanisms for coordination of independent agents' actions. This paper proposes a multistate searching algorithm with reinforcement learning for the automatic core design of a boiling water reactor. The characteristics of this algorithm are that the coupling structure and the coupling operation suitable for the assigned problem are assumed and an optimal solution is obtained by mutual interference in multistate transitions using multiagents. Calculations in an actual plant confirmed that the proposed algorithm increased the convergence ability of the optimization process

Integration of ANFIS, NN and GA to determine core porosity and permeability from conventional well log data

Science.gov (United States)

Ja'fari, Ahmad; Hamidzadeh Moghadam, Rasoul

2012-10-01

Routine core analysis provides useful information for petrophysical study of the hydrocarbon reservoirs. Effective porosity and fluid conductivity (permeability) could be obtained from core analysis in laboratory. Coring hydrocarbon bearing intervals and analysis of obtained cores in laboratory is expensive and time consuming. In this study an improved method to make a quantitative correlation between porosity and permeability obtained from core and conventional well log data by integration of different artificial intelligent systems is proposed. The proposed method combines the results of adaptive neuro-fuzzy inference system (ANFIS) and neural network (NN) algorithms for overall estimation of core data from conventional well log data. These methods multiply the output of each algorithm with a weight factor. Simple averaging and weighted averaging were used for determining the weight factors. In the weighted averaging method the genetic algorithm (GA) is used to determine the weight factors. The overall algorithm was applied in one of SW Iran’s oil fields with two cored wells. One-third of all data were used as the test dataset and the rest of them were used for training the networks. Results show that the output of the GA averaging method provided the best mean square error and also the best correlation coefficient with real core data.

Integration of ANFIS, NN and GA to determine core porosity and permeability from conventional well log data

International Nuclear Information System (INIS)

Ja’fari, Ahmad; Moghadam, Rasoul Hamidzadeh

2012-01-01

Routine core analysis provides useful information for petrophysical study of the hydrocarbon reservoirs. Effective porosity and fluid conductivity (permeability) could be obtained from core analysis in laboratory. Coring hydrocarbon bearing intervals and analysis of obtained cores in laboratory is expensive and time consuming. In this study an improved method to make a quantitative correlation between porosity and permeability obtained from core and conventional well log data by integration of different artificial intelligent systems is proposed. The proposed method combines the results of adaptive neuro-fuzzy inference system (ANFIS) and neural network (NN) algorithms for overall estimation of core data from conventional well log data. These methods multiply the output of each algorithm with a weight factor. Simple averaging and weighted averaging were used for determining the weight factors. In the weighted averaging method the genetic algorithm (GA) is used to determine the weight factors. The overall algorithm was applied in one of SW Iran’s oil fields with two cored wells. One-third of all data were used as the test dataset and the rest of them were used for training the networks. Results show that the output of the GA averaging method provided the best mean square error and also the best correlation coefficient with real core data. (paper)

Innovation of genetic algorithm code GenA for WWER fuel loading optimization

International Nuclear Information System (INIS)

Sustek, J.

2005-01-01

One of the stochastic search techniques - genetic algorithms - was recently used for optimization of arrangement of fuel assemblies (FA) in core of reactors WWER-440 and WWER-1000. Basic algorithm was modified by incorporation of SPEA scheme. Both were enhanced and some results are presented (Authors)

Genetic variation of contact dermatitis in broilers

DEFF Research Database (Denmark)

Ask, Birgitte

2010-01-01

This study aimed to investigate the presence of genetic variation in footpad dermatitis (FPD) and hock burns (HB) and the possibility to genetically select against these. A field trial including 10 commercial broiler lines (n = 102 to 265) was carried out at 2 Dutch farms. Footpad dermatitis and HB...

POEM a core instrument to measure symptoms in clinical trials: a HOME statement

OpenAIRE

Spuls, Ph.I.; Gerbens, L.A.A.; Simpson, E.; Apfelbacher, C.J.; Chalmers, J.R.; Thomas, K.S.; Prinsen, C.A.C.; Kobyletzki, L.B. von; Singh, J.A.; Williams, Hywel C.; Schmitt, J.

2016-01-01

Background: The Harmonising Outcome Measures for Eczema (HOME) initiative has defined four core outcome domains for a core outcome set (COS) to be measured in all atopic eczema (AE) trials to ensure cross-trial comparison: clinical signs, symptoms, quality of life and longterm control. Objectives: The aim of this paper is to report on the consensus process that was used to select the core instrument to consistently assess symptoms in all future AE trials. Methods: Following the HOME roa...

Contributions to the determination of the thermal core reliability of pressurized water reactors

International Nuclear Information System (INIS)

Ackermann, G.; Horche, W.; Melchior, H.; Prasser, H.M.

1982-09-01

The investigations in the field of thermohydraulics of PW reactors are aimed at a possible increase of economy and reliability of WWER-type-reactors. In detail the flow distribution at the core entrance, the modification of the power distribution as a result of an irregular temperature distribution at the core entrance, and based on the theory of hot spots the thermic core reliability are studied. In this connection qualitatively new methods are applied characterized by low expenditure. (author)

Reactor core with rod-shaped fuel cells

International Nuclear Information System (INIS)

Dworak, A.

1976-01-01

The proposal refers to the optimization of the power distribution in a reactor core which is provided with several successive rod-shaped fuel cells. A uniform power output - especially in radial direction - is aimed at. This is achieved by variation of the dwelling periods of the fuel cells, which have, for this purpose, a fuel mixture changing from layer to layer. The fuel cells with the shortest dwelling period are arranged near the coolant inlet side of the reactor core. The dwelling periods of the fuel cells are adapted to the given power distribution. As neighboring cells have equal dwelling periods, the exchange can be performed much easier then with the composition currently known. (UWI) [de

Participation in a Year-Long CURE Embedded into Major Core Genetics and Cellular and Molecular Biology Laboratory Courses Results in Gains in Foundational Biological Concepts and Experimental Design Skills by Novice Undergraduate Researchers†

Science.gov (United States)

Peteroy-Kelly, Marcy A.; Marcello, Matthew R.; Crispo, Erika; Buraei, Zafir; Strahs, Daniel; Isaacson, Marisa; Jaworski, Leslie; Lopatto, David; Zuzga, David

2017-01-01

This two-year study describes the assessment of student learning gains arising from participation in a year-long curriculum consisting of a classroom undergraduate research experience (CURE) embedded into second-year, major core Genetics and Cellular and Molecular Biology (CMB) laboratory courses. For the first course in our CURE, students used micro-array or RNAseq analyses to identify genes important for environmental stress responses by Saccharomyces cerevisiae. The students were tasked with creating overexpressing mutants of their genes and designing their own original experiments to investigate the functions of those genes using the overexpression and null mutants in the second CURE course. In order to evaluate student learning gains, we employed three validated concept inventories in a pretest/posttest format and compared gains on the posttest versus the pretest with student laboratory final grades. Our results demonstrated that there was a significant correlation between students earning lower grades in the Genetics laboratory for both years of this study and gains on the Genetics Concept Assessment (GCA). We also demonstrated a correlation between students earning lower grades in the Genetics laboratory and gains on the Introductory Molecular and Cell Biology Assessment (IMCA) for year 1 of the study. Students furthermore demonstrated significant gains in identifying the variable properties of experimental subjects when assessed using the Rubric for Experimental (RED) design tool. Results from the administration of the CURE survey support these findings. Our results suggest that a year-long CURE enables lower performing students to experience greater gains in their foundational skills for success in the STEM disciplines. PMID:28904646

Diversity analysis and establishment of core subsets of hyacinth bean collection of bangladesh

International Nuclear Information System (INIS)

Islam, M.N.

2014-01-01

Plant Genetic Resource Centre, Bangladesh Agricultural Research Institute, Gazipur, Bangladesh, maintained 484 hyacinth bean (Lablab purpureusL.) accessions. Distribution of vine colors, flower and pod colors, pod curvature and beak position on pod noticed the presence of substantial variation in the collection. Shannon Diversity Index also revealed high phenotypic diversity in vine and pod characters. High diversities were estimated in quantitative characters of inflorescence and pod characters. Considering a core collection strategy, the accessions were stratified into two groups based on vine colors: green and purple. Maximum genotypes of the collection were of green vine. Each of two subgroups were divided into three groups according to colors of pod i.e., green, white and red. Each group again divided itself into two according to beak position as central and marginal of pod. High diversity was also found regarding pod curvature and beak position on it. Strategically, a core subset consisting of 36 accessions out of 484 accessions was determined. Diversity Indices of different characters of the core accessions were of equal or higher magnitudes to the respective characters of base collection indicating the better representation of core to the original collection. (author)

Genetic Diversity of Chinese and Global Pea (Pisum sativum L.) Collections.

Science.gov (United States)

Pea (Pisum sativum L.) is an important food and feed legume grown across many temperate regions of the world, especially from Asia to Europe and North America. The goal of this study was to use 30 informative pea microsatellite markers to compare genetic diversity in a global core from the USDA and ...

Application of Genetic Algorithm methodologies in fuel bundle burnup optimization of Pressurized Heavy Water Reactor

International Nuclear Information System (INIS)

Jayalal, M.L.; Ramachandran, Suja; Rathakrishnan, S.; Satya Murty, S.A.V.; Sai Baba, M.

2015-01-01

Highlights: • We study and compare Genetic Algorithms (GA) in the fuel bundle burnup optimization of an Indian Pressurized Heavy Water Reactor (PHWR) of 220 MWe. • Two Genetic Algorithm methodologies namely, Penalty Functions based GA and Multi Objective GA are considered. • For the selected problem, Multi Objective GA performs better than Penalty Functions based GA. • In the present study, Multi Objective GA outperforms Penalty Functions based GA in convergence speed and better diversity in solutions. - Abstract: The work carried out as a part of application and comparison of GA techniques in nuclear reactor environment is presented in the study. The nuclear fuel management optimization problem selected for the study aims at arriving appropriate reference discharge burnup values for the two burnup zones of 220 MWe Pressurized Heavy Water Reactor (PHWR) core. Two Genetic Algorithm methodologies namely, Penalty Functions based GA and Multi Objective GA are applied in this study. The study reveals, for the selected problem of PHWR fuel bundle burnup optimization, Multi Objective GA is more suitable than Penalty Functions based GA in the two aspects considered: by way of producing diverse feasible solutions and the convergence speed being better, i.e. it is capable of generating more number of feasible solutions, from earlier generations. It is observed that for the selected problem, the Multi Objective GA is 25.0% faster than Penalty Functions based GA with respect to CPU time, for generating 80% of the population with feasible solutions. When average computational time of fixed generations are considered, Penalty Functions based GA is 44.5% faster than Multi Objective GA. In the overall performance, the convergence speed of Multi Objective GA surpasses the computational time advantage of Penalty Functions based GA. The ability of Multi Objective GA in producing more diverse feasible solutions is a desired feature of the problem selected, that helps the

Optimalisation Of Oxide Burn-Up Enhanced For RSG-Gas Core

International Nuclear Information System (INIS)

Tukiran; Sembiring, Tagor Malem

2000-01-01

Strategy of fuel management of the RSG-Gas core has been changed from 6/1 to 5/1 pattern so the evaluation of fuel management is necessary to be done. The aim of evaluation is to look for the optimal fuel management so that the fuel can be stayed longer in the core and finally can save cost of operation. Using Batan-EQUIL-2D code did the evaluation of fuel management with 5/1 pattern. The result of evaluation is used to choose which one is more advantage without break the safety margin which is available in the Safety Analysis Report (SAR) firstly, the fuel management was calculated with core excess reactivity of 9,2% criteria. Secondly, fuel burn-up maximum of 56% criteria and the last, fuel burn-up maximum of 64% criteria. From the result of fuel management calculation of the RSG-Gas equilibrium core can be concluded that the optimal RSG-Gas equilibrium core with 5/1 pattern is if the fuel burn-up maximum 64% and the energy in a cycle of operation is 715 MWD. The fuel can be added one more step in the core without break any safety margin. It means that the RSG-Gas equilibrium core can save fuel and cost reduction

Grandmothers as gems of genetic wisdom: exploring South African traditional beliefs about the causes of childhood genetic disorders.

Science.gov (United States)

Penn, Claire; Watermeyer, Jennifer; MacDonald, Carol; Moabelo, Colleen

2010-02-01

With its diverse cultural and linguistic profile, South Africa provides a unique context to explore contextual influences on the process of genetic counseling. Prior research suggests intergenerational differences regarding models of causation which influence treatment-seeking paths. This pilot study therefore aimed to explore South African traditional beliefs regarding common childhood genetic disorders. Three focus groups were conducted with fifteen grandmothers from different cultural backgrounds in an urban community. Questions pertained to the role of the grandmother, traditional beliefs regarding causes of genetic disorders, explanations of heredity, and prevention and management of genetic disorders. Results indicate a variety of cultural explanations for causes of childhood genetic disorders. These causes can be classified into categories related to lifestyle, behavior, social issues, culture, religion, genetic, and familial causes. Prevention and treatment issues are also highlighted. These findings have implications for genetic counseling practice, which needs to include a greater focus on cultural issues.

Short communication: Genetic lag represents commercial herd genetic merit more accurately than the 4-path selection model.

Science.gov (United States)

Dechow, C D; Rogers, G W

2018-05-01

Expectation of genetic merit in commercial dairy herds is routinely estimated using a 4-path genetic selection model that was derived for a closed population, but commercial herds using artificial insemination sires are not closed. The 4-path model also predicts a higher rate of genetic progress in elite herds that provide artificial insemination sires than in commercial herds that use such sires, which counters other theoretical assumptions and observations of realized genetic responses. The aim of this work is to clarify whether genetic merit in commercial herds is more accurately reflected under the assumptions of the 4-path genetic response formula or by a genetic lag formula. We demonstrate by tracing the transmission of genetic merit from parents to offspring that the rate of genetic progress in commercial dairy farms is expected to be the same as that in the genetic nucleus. The lag in genetic merit between the nucleus and commercial farms is a function of sire and dam generation interval, the rate of genetic progress in elite artificial insemination herds, and genetic merit of sires and dams. To predict how strategies such as the use of young versus daughter-proven sires, culling heifers following genomic testing, or selective use of sexed semen will alter genetic merit in commercial herds, genetic merit expectations for commercial herds should be modeled using genetic lag expectations. Copyright © 2018 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Core catcher for nuclear reactor core meltdown containment

International Nuclear Information System (INIS)

Driscoll, M.J.; Bowman, F.L.

1978-01-01

A bed of graphite particles is placed beneath a nuclear reactor core outside the pressure vessel but within the containment building to catch the core debris in the event of failure of the emergency core cooling system. Spray cooling of the debris and graphite particles together with draining and flooding of coolant fluid of the graphite bed is provided to prevent debris slump-through to the bottom of the bed

Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology.

NARCIS (Netherlands)

Belkum, van A.; Struelens, M.; Visser, de J.A.G.M.; Verburgh, H.; Tibayrenc., M.

2001-01-01

Currently, genetic typing of microorganisms is widely used in several major fields of microbiological research. Taxonomy, research aimed at elucidation of evolutionary dynamics or phylogenetic relationships, population genetics of microorganisms, and microbial epidemiology all rely on genetic typing

Core Professionalism Education in Surgery: A Systematic Review.

Science.gov (United States)

Sarıoğlu Büke, Akile; Karabilgin Öztürkçü, Özlem Sürel; Yılmaz, Yusuf; Sayek, İskender

2018-03-15

Professionalism education is one of the major elements of surgical residency education. To evaluate the studies on core professionalism education programs in surgical professionalism education. Systematic review. This systematic literature review was performed to analyze core professionalism programs for surgical residency education published in English with at least three of the following features: program developmental model/instructional design method, aims and competencies, methods of teaching, methods of assessment, and program evaluation model or method. A total of 27083 articles were retrieved using EBSCOHOST, PubMed, Science Direct, Web of Science, and manual search. Eight articles met the selection criteria. The instructional design method was presented in only one article, which described the Analysis, Design, Development, Implementation, and Evaluation model. Six articles were based on the Accreditation Council for Graduate Medical Education criterion, although there was significant variability in content. The most common teaching method was role modeling with scenario- and case-based learning. A wide range of assessment methods for evaluating professionalism education were reported. The Kirkpatrick model was reported in one article as a method for program evaluation. It is suggested that for a core surgical professionalism education program, developmental/instructional design model, aims and competencies, content, teaching methods, assessment methods, and program evaluation methods/models should be well defined, and the content should be comparable.

Characteristics of Misclassified CT Perfusion Ischemic Core in Patients with Acute Ischemic Stroke.

Directory of Open Access Journals (Sweden)

Ralph R E G Geuskens

Full Text Available CT perfusion (CTP is used to estimate the extent of ischemic core and penumbra in patients with acute ischemic stroke. CTP reliability, however, is limited. This study aims to identify regions misclassified as ischemic core on CTP, using infarct on follow-up noncontrast CT. We aim to assess differences in volumetric and perfusion characteristics in these regions compared to areas that ended up as infarct on follow-up.This study included 35 patients with >100 mm brain coverage CTP. CTP processing was performed using Philips software (IntelliSpace 7.0. Final infarct was automatically segmented on follow-up noncontrast CT and used as reference. CTP and follow-up noncontrast CT image data were registered. This allowed classification of ischemic lesion agreement (core on CTP: rMTT≥145%, aCBV<2.0 ml/100g and infarct on follow-up noncontrast CT and misclassified ischemic core (core on CTP, not identified on follow-up noncontrast CT regions. False discovery ratio (FDR, defined as misclassified ischemic core volume divided by total CTP ischemic core volume, was calculated. Absolute and relative CTP parameters (CBV, CBF, and MTT were calculated for both misclassified CTP ischemic core and ischemic lesion agreement regions and compared using paired rank-sum tests.Median total CTP ischemic core volume was 49.7ml (IQR:29.9ml-132ml; median misclassified ischemic core volume was 30.4ml (IQR:20.9ml-77.0ml. Median FDR between patients was 62% (IQR:49%-80%. Median relative mean transit time was 243% (IQR:198%-289% and 342% (IQR:249%-432% for misclassified and ischemic lesion agreement regions, respectively. Median absolute cerebral blood volume was 1.59 (IQR:1.43-1.79 ml/100g (P<0.01 and 1.38 (IQR:1.15-1.49 ml/100g (P<0.01 for misclassified ischemic core and ischemic lesion agreement, respectively. All CTP parameter values differed significantly.For all patients a considerable region of the CTP ischemic core is misclassified. CTP parameters significantly

Development and Integration of Professional Core Values Among Practicing Clinicians.

Science.gov (United States)

McGinnis, Patricia Quinn; Guenther, Lee Ann; Wainwright, Susan F

2016-09-01

The physical therapy profession has adopted professional core values, which define expected values for its members, and developed a self-assessment tool with sample behaviors for each of the 7 core values. However, evidence related to the integration of these core values into practice is limited. The aims of this study were: (1) to gain insight into physical therapists' development of professional core values and (2) to gain insight into participants' integration of professional core values into clinical practice. A qualitative design permitted in-depth exploration of the development and integration of the American Physical Therapy Association's professional core values into physical therapist practice. Twenty practicing physical therapists were purposefully selected to explore the role of varied professional, postprofessional, and continuing education experiences related to exposure to professional values. The Core Values Self-Assessment and résumé sort served as prompts for reflection via semistructured interviews. Three themes were identified: (1) personal values were the foundation for developing professional values, which were further shaped by academic and clinical experiences, (2) core values were integrated into practice independent of practice setting and varied career paths, and (3) participants described the following professional core values as well integrated into their practice: integrity, compassion/caring, and accountability. Social responsibility was an area consistently identified as not being integrated into their practice. The Core Values Self-Assessment tool is a consensus-based document developed through a Delphi process. Future studies to establish reliability and construct validity of the tool may be warranted. Gaining an in-depth understanding of how practicing clinicians incorporate professional core values into clinical practice may shed light on the relationship between core values mastery and its impact on patient care. Findings may

Modelling of magnetostriction of transformer magnetic core for vibration analysis

Science.gov (United States)

Marks, Janis; Vitolina, Sandra

2017-12-01

Magnetostriction is a phenomenon occurring in transformer core in normal operation mode. Yet in time, it can cause the delamination of magnetic core resulting in higher level of vibrations that are measured on the surface of transformer tank during diagnostic tests. The aim of this paper is to create a model for evaluating elastic deformations in magnetic core that can be used for power transformers with intensive vibrations in order to eliminate magnetostriction as a their cause. Description of the developed model in Matlab and COMSOL software is provided including restrictions concerning geometry and properties of materials, and the results of performed research on magnetic core anisotropy are provided. As a case study modelling of magnetostriction for 5-legged 200 MVA power transformer with the rated voltage of 13.8/137kV is conducted, based on which comparative analysis of vibration levels and elastic deformations is performed.

Modelling of magnetostriction of transformer magnetic core for vibration analysis

Directory of Open Access Journals (Sweden)

Marks Janis

2017-12-01

Full Text Available Magnetostriction is a phenomenon occurring in transformer core in normal operation mode. Yet in time, it can cause the delamination of magnetic core resulting in higher level of vibrations that are measured on the surface of transformer tank during diagnostic tests. The aim of this paper is to create a model for evaluating elastic deformations in magnetic core that can be used for power transformers with intensive vibrations in order to eliminate magnetostriction as a their cause. Description of the developed model in Matlab and COMSOL software is provided including restrictions concerning geometry and properties of materials, and the results of performed research on magnetic core anisotropy are provided. As a case study modelling of magnetostriction for 5-legged 200 MVA power transformer with the rated voltage of 13.8/137kV is conducted, based on which comparative analysis of vibration levels and elastic deformations is performed.

Uptake of genetic counselling services by patients with cystic fibrosis ...

African Journals Online (AJOL)

Background: Although cystic fibrosis (CF) is a common genetic condition, genetic counselling services appear to be underutilised by affected families. The aim of this study was to determine the uptake of genetic counselling and mutation testing for CF by relatives of affected individuals, and the impact of introducing ...

Genetic effects of radiation. Annex I

International Nuclear Information System (INIS)

1982-01-01

This Annex is aimed at an updating of the 1977 UNSCEAR report, which presented a detailed review of the genetic effects of ionizing radiation, especially those parts that require significant revisions in the light of new data. There is an extensive bibliography with over 1000 references. Particular emphasis is given to those data that are relevant to the evaluation of genetic radiation hazards in man.

REML estimates of genetic parameters of sexual dimorphism for ...

Indian Academy of Sciences (India)

Administrator

Full and half sibs were distinguished, in contrast to usual isofemale studies in which animals ... studies. Thus, the aim of this study was to estimate genetic parameters of sexual dimorphism in isofemale lines using ..... Muscovy ducks. Genet.

Drilling equipment for difficult coring conditions: a new type of core lifter and triple tube core barrel

Energy Technology Data Exchange (ETDEWEB)

Robinson, J B

1968-08-01

Although considerable improvements in diamond drilling equipment have been made since the early 1950's, deficiencies in existing equipment led to the development of a new type core lifter and special 20 ft triple tube core barrel designed to operate in bad coring conditions. It is claimed that although developed essentially for coal drilling, the new equipment could be adapted to other fields of diamond drilling with the cost advantage of increased life of the core lifter.

Genetic variability of isoflavones in the USDA red clover core collection

Directory of Open Access Journals (Sweden)

Graziele P. Ramos

2012-11-01

Full Text Available Red clover is one of the most utilized forage in agriculture and contains many of the isoflavones known for their human health benefits. The objectives of this study were: i to quantify, using HPLC analysis, isoflavones in 77 accessions from the USDA core collection and a Brazilian line; ii to verify possible relationships depending on their origin, improvement status or maturity type and; iii to verify the seasonal variation. The isoflavone mean contents were 29.27 µg g-1 of dry material for daidzein, 163.69 µg g-1 for genistein, 11353.29 µg g-1 for formononetin and 6568.8 µg g-1 for biochanin A. Clustering was mainly influenced by the total amount of isoflavones and partially due to maturity type, improvement status and geographic origin. The seasonal evaluation demonstrated an increase of concentration during winter, and decrease during spring. These results highlighted accessions that can be used to develop new varieties with low or high isoflavones concentration.

Development of a BWR loading pattern design system based on modified genetic algorithms and knowledge

International Nuclear Information System (INIS)

Martin-del-Campo, Cecilia; Francois, Juan Luis; Avendano, Linda; Gonzalez, Mario

2004-01-01

An optimization system based on Genetic Algorithms (GAs), in combination with expert knowledge coded in heuristics rules, was developed for the design of optimized boiling water reactor (BWR) fuel loading patterns. The system was coded in a computer program named Loading Pattern Optimization System based on Genetic Algorithms, in which the optimization code uses GAs to select candidate solutions, and the core simulator code CM-PRESTO to evaluate them. A multi-objective function was built to maximize the cycle energy length while satisfying power and reactivity constraints used as BWR design parameters. Heuristic rules were applied to satisfy standard fuel management recommendations as the Control Cell Core and Low Leakage loading strategies, and octant symmetry. To test the system performance, an optimized cycle was designed and compared against an actual operating cycle of Laguna Verde Nuclear Power Plant, Unit I

Analysis of high moderation full MOX BWR core physics experiments BASALA

International Nuclear Information System (INIS)

Ishii, Kazuya; Ando, Yoshihira; Takada, Naoyuki; Kan, Taro; Sasagawa, Masaru; Kikuchi, Tsukasa; Yamamoto, Toru; Kanda, Ryoji; Umano, Takuya

2005-01-01

Nuclear Power Engineering Corporation (NUPEC) has performed conceptual design studies of high moderation full MOX LWR cores that aim for increasing fissile Pu consumption rate and reducing residual Pu in discharged MOX fuel. As part of these studies, NUPEC, French Atomic Energy Commission (CEA) and their industrial partners implemented an experimental program BASALA following MISTRAL. They were devoted to measuring the core physics parameters of such advanced cores. The MISTRAL program consists of one reference UO 2 core, two homogeneous full MOX cores and one full MOX PWR mock-up core that have higher moderation ratio than the conventional lattice. As for MISTRAL, the analysis results have already been reported on April 2003. The BASALA program consists of two high moderation full MOX BWR mock-up cores for operating and cold stand-by conditions. NUPEC has analyzed the experimental results of BASALA with the diffusion and the transport calculations by the SRAC code system and the continuous energy Monte Carlo calculations by the MVP code with the common nuclear data file, JENDL-3.2. The calculation results well reproduce the experimental data approximately within the same range of the experimental uncertainty. The analysis results of MISTRAL and BASALA indicate that these applied analysis methods have the same accuracy for the UO 2 and MOX cores, for the different moderation MOX cores, and for the homogeneous and the mock-up MOX cores. (author)

Horizontal transfer generates genetic variation in an asexual pathogen

Directory of Open Access Journals (Sweden)

Xiaoqiu Huang

2014-10-01

Full Text Available There are major gaps in the understanding of how genetic variation is generated in the asexual pathogen Verticillium dahliae. On the one hand, V. dahliae is a haploid organism that reproduces clonally. On the other hand, single-nucleotide polymorphisms and chromosomal rearrangements were found between V. dahliae strains. Lineage-specific (LS regions comprising about 5% of the genome are highly variable between V. dahliae strains. Nonetheless, it is unknown whether horizontal gene transfer plays a major role in generating genetic variation in V. dahliae. Here, we analyzed a previously sequenced V. dahliae population of nine strains from various geographical locations and hosts. We found highly homologous elements in LS regions of each strain; LS regions of V. dahliae strain JR2 are much richer in highly homologous elements than the core genome. In addition, we discovered, in LS regions of JR2, several structural forms of nonhomologous recombination, and two or three homologous sequence types of each form, with almost each sequence type present in an LS region of another strain. A large section of one of the forms is known to be horizontally transferred between V. dahliae strains. We unexpectedly found that 350 kilobases of dynamic LS regions were much more conserved than the core genome between V. dahliae and a closely related species (V. albo-atrum, suggesting that these LS regions were horizontally transferred recently. Our results support the view that genetic variation in LS regions is generated by horizontal transfer between strains, and by chromosomal reshuffling reported previously.

Multi-population Genomic Relationships for Estimating Current Genetic Variances Within and Genetic Correlations Between Populations.

Science.gov (United States)

Wientjes, Yvonne C J; Bijma, Piter; Vandenplas, Jérémie; Calus, Mario P L

2017-10-01

Different methods are available to calculate multi-population genomic relationship matrices. Since those matrices differ in base population, it is anticipated that the method used to calculate genomic relationships affects the estimate of genetic variances, covariances, and correlations. The aim of this article is to define the multi-population genomic relationship matrix to estimate current genetic variances within and genetic correlations between populations. The genomic relationship matrix containing two populations consists of four blocks, one block for population 1, one block for population 2, and two blocks for relationships between the populations. It is known, based on literature, that by using current allele frequencies to calculate genomic relationships within a population, current genetic variances are estimated. In this article, we theoretically derived the properties of the genomic relationship matrix to estimate genetic correlations between populations and validated it using simulations. When the scaling factor of across-population genomic relationships is equal to the product of the square roots of the scaling factors for within-population genomic relationships, the genetic correlation is estimated unbiasedly even though estimated genetic variances do not necessarily refer to the current population. When this property is not met, the correlation based on estimated variances should be multiplied by a correction factor based on the scaling factors. In this study, we present a genomic relationship matrix which directly estimates current genetic variances as well as genetic correlations between populations. Copyright © 2017 by the Genetics Society of America.

Translation and adaption of the Genetic Counseling Outcome Scale (GCOS-24) to Danish

DEFF Research Database (Denmark)

Diness, Birgitte Rode; Overbeck, Gritt; Duelund, T.

2013-01-01

Background and aim: The ability to measure patient outcomes from genetic counselling is a prerequisite for evidencebased development of practice. The Genetic Counselling Outcome Scale (GCOS-24) is a recently developed patient reported outcome measure. The aim of this project was to develop a Danish...... perception of genetic counseling and genetic conditions and led to adjustments of the original translation, leading to development of a tool better-suited to the target population. We would recommend the described approach when attempting translation of patient reported outcome measures...

Sampling of sediment cores; Muestreo de cores sedimentarios

Energy Technology Data Exchange (ETDEWEB)

Ruiz-Fernandez, Ana Carolina [Universidad Nacional Autonoma de Mexico, Instituto de Ciencias del Mar y Limnologia (Mexico); Diaz Asencio, Misael [Centro de Estudios Ambientales de Cienfuegos (Cuba)

2012-07-01

In this chapter we describe techniques for collecting sediment cores for obtaining geochronologies by {sup 210}Pb (100 years) to allow historical reconstruction of environmental changes in the coastal zone. We examine relevant aspects for the sampling design, mainly related to the basic information about the area of interest necessary to choose the perfect place sampling, thereby we can improve the chances of success in meeting the objectives of the study. We also include description of the sampling methods aimed at maximizing the collecting capabilities of undisturbed sedimentary material, emphasizing the recovery of unaltered sediment-water interface. In addition, we describe subsampling procedures and sample handling intended to minimize post-sampling disruption to improve the possibilities of a reconstruction of reliable geochronologies. [Spanish] En este capitulo describimos tecnicas de recogida de cores sedimentarios para la obtencion de geocronologias por {sup 210}Pb (100 anos) que permitan la reconstruccion historica de cambios ambientales en la zona costera. Examinamos los aspectos relevantes para el diseno del muestreo, principalmente relacionados con la informacion basica sobre el area de interes necesaria para escoger el lugar idoneo de muestreo. De ese modo podemos mejorar las posibilidades de exito en el cumplimiento de los objetivos del estudio. Incluimos ademas la descripcion de los metodos de muestreo orientados a maximizar las posibilidades de recogida de material sedimentario no perturbado, poniendo enfasis en la recuperacion inalterada de la interfase agua-sedimento. Asimismo, describimos procedimientos de submuestreo y manipulacion de muestras, con los cuales se pretende minimizar la perturbacion post-muestreo para mejorar las posibilidades de una reconstruccion de geocronologias confiables.

Consensus development of core competencies in intensive and critical care medicine training in China

OpenAIRE

Hu, Xiaoyun; Xi, Xiuming; Ma, Penglin; Qiu, Haibo; Yu, Kaijiang; Tang, Yaoqing; Qian, Chuanyun; Fang, Qiang; Wang, Yushan; Yu, Xiangyou; Xu, Yuan; Du, Bin

2016-01-01

Background The aim of this study is to develop consensus on core competencies required for postgraduate training in intensive care medicine. Methods We used a combination of a modified Delphi method and a nominal group technique to create and modify the list of core competencies to ensure maximum consensus. Ideas were generated modified from Competency Based Training in Intensive Care Medicine in Europe collaboration (CoBaTrICE) core competencies. An online survey invited healthcare professio...

A new approach to the use of genetic algorithms to solve the pressurized water reactor's fuel management optimization problem

Energy Technology Data Exchange (ETDEWEB)

Chapot, Jorge Luiz C. [ELETRONUCLEAR, Rio de Janeiro, RJ (Brazil); Carvalho Da Silva, Fernando; Schirru, Roberto [COPPE/UFRJ-Nuclear, Rio de Janeiro, RJ (Brazil)

1999-05-01

A Genetic Algorithm (GA) based system, coupling the computer codes GENESIS 5.0 and ANC through the interface ALGER has been developed aiming at pressurized water reactor's (PWR) fuel management optimization. An innovative codification, the List Model (LM), has been incorporated into the system. LM avoids the use of heuristic crossover operators and only generates valid nonrepetitive loading patterns in the reactor core. The LM has been used to solve the Traveling Salesman Problem (TSP). The results got for a benchmark problem were very satisfactory, in terms of precision and computational costs. The GENESIS/ALGER/ANC system has been successfully tested in optimization studies for Angra 1 power plant reloads.

Design features affecting dynamic behaviour of fast reactor cores

International Nuclear Information System (INIS)

Kayser, G.; Gouriou, A.

1981-06-01

The study of dynamic response of an LMFBR to normal and accidental transients needs first of all a simulation code taking into account all the important effects. The DYN-1 code aims at this target. It represents with a sufficiently accurate meshing the core in a 20 geometry for the thermal and reactivity effects, while the kinetics of this core are calculated with a point model. The primary pool, secondary loops, steam generator are also represented, as well as the control and protective systems. We give a short description of this code. Simpler codes are sometimes good enough for parametric studies

Genome-wide association study of offspring birth weight in 86 577 women identifies five novel loci and highlights maternal genetic effects that are independent of fetal genetics

NARCIS (Netherlands)

Beaumont, R.N. (Robin N.); N.M. Warrington (Nicole); A. Cavadino (Alana); A.W.R. Tyrrell; M. Nodzenski (Michael); M. Horikoshi (Momoko); F. Geller (Frank); R. Myhre (Ronny); R.C. Richmond (Rebecca C.); Paternoster, L. (Lavinia); J.P. Bradfield (Jonathan); E. Kreiner-Møller (Eskil); V. Huikari (Ville); S. Metrustry (Sarah); K.L. Lunetta (Kathryn); J.N. Painter (Jodie N.); J.J. Hottenga (Jouke Jan); C. Allard (Catherine); S.J. Barton (Sheila J.); Espinosa, A. (Ana); J.A. Marsh (Julie); C. Potter (Catherine); Zhang, G. (Ge); W.Q. Ang (Wei); D. Berry (Diane); L. Bouchard (Luigi); S. Das (Shikta); H. Hakonarson (Hakon); J. Heikkinen (Jani); Helgeland, Ø. (Øyvind); B. Hocher (Berthold); A. Hofman (Albert); H.M. Inskip (Hazel); S.E. Jones (Samuel E.); M. Kogevinas (Manolis); P.A. Lind (Penelope); L. Marullo (Letizia); S.E. Medland (Sarah Elizabeth); Murray, A. (Anna); Murray, J.C. (Jeffrey C.); Njølstad, P.R. (Pa l R.); C. Nohr (Christian); C. Reichetzeder (Christoph); S.M. Ring (Susan); K.S. Ruth (Katherine S.); L. Santa-Marina (Loreto); D.M. Scholtens (Denise M.); Sebert, S. (Sylvain); V. Sengpiel (Verena); Tuke, M.A. (Marcus A.); Vaudel, M. (Marc); M.N. Weedon (Michael); G.A.H.M. Willemsen (Gonneke); Wood, A.R. (Andrew R.); Yaghootkar, H. (Hanieh); Muglia, L.J. (Louis J.); M. Bartels (Meike); C.L. Relton (Caroline); C.E. Pennell (Craig); L. Chatzi (Leda); Estivill, X. (Xavier); Holloway, J.W. (John W.); D.I. Boomsma (Dorret); Montgomery, G.W. (Grant W.); J. Murabito (Joanne); T.D. Spector (Timothy); Power, C. (Christine); Järvelin, M.-R. (Marjo-Ritta); Bisgaard, H. (Hans); Grant, S.F.A. (Struan F.A.); Sørensen, T.I.A. (Thorkild I.A.); Jaddoe, V.W. (Vincent W.); B. Jacobsson (Bo); Melbye, M. (Mads); McCarthy, M.I. (Mark I.); A.T. Hattersley (Andrew); Hayes, M.G. (M. Geoffrey); T.M. Frayling (Timothy); M.-F. Hivert (Marie-France); J.F. Felix (Janine); Hyppönen, E. (Elina); Lowe, W.L. (William L.); Evans, D.M. (David M.); Lawlor, D.A. (Debbie A.); B. Feenstra (Bjarke); R.M. Freathy (Rachel)

2018-01-01

textabstractGenome-wide association studies of birth weight have focused on fetal genetics, whereas relatively little is known about the role of maternal genetic variation. We aimed to identify maternal genetic variants associated with birth weight that could highlight potentially relevant maternal

Characterizing the Core via K-Core Covers

NARCIS (Netherlands)

Sanchez, S.M.; Borm, P.E.M.; Estevez, A.

2013-01-01

This paper extends the notion of individual minimal rights for a transferable utility game (TU-game) to coalitional minimal rights using minimal balanced families of a specific type, thus defining a corresponding minimal rights game. It is shown that the core of a TU-game coincides with the core of

Determination of PWR core water level using ex-core detectors signals

International Nuclear Information System (INIS)

Bernal, Alvaro; Abarca, Agustin; Miro, Rafael; Verdu, Gumersindo

2013-01-01

The core water level provides relevant neutronic and thermalhydraulic information of the reactor such as power, k eff and cooling ability; in fact, core water level monitoring could be used to predict LOCA and cooling reduction which may deal with core damage. Although different detection equipment is used to monitor several parameters such as the power, core water level monitoring is not an evident task. However, ex-core detectors can measure the fast neutrons leaking the core and several studies demonstrate the existence of a relationship between fast neutron leakage and core water level due to the shielding effect of the water. In addition, new ex-core detectors are being developed, such as silicon carbide semiconductor radiation detectors, monitoring the neutron flux with higher accuracy and in higher temperatures conditions. Therefore, a methodology to determine this relationship has been developed based on a Monte Carlo calculation using MCNP code and applying variance reduction with adjoint functions based on the adjoint flux obtained with the discrete ordinates code TORT. (author)

HYDRATE CORE DRILLING TESTS

Energy Technology Data Exchange (ETDEWEB)

John H. Cohen; Thomas E. Williams; Ali G. Kadaster; Bill V. Liddell

2002-11-01

The ''Methane Hydrate Production from Alaskan Permafrost'' project is a three-year endeavor being conducted by Maurer Technology Inc. (MTI), Noble, and Anadarko Petroleum, in partnership with the U.S. DOE National Energy Technology Laboratory (NETL). The project's goal is to build on previous and ongoing R&D in the area of onshore hydrate deposition. The project team plans to design and implement a program to safely and economically drill, core and produce gas from arctic hydrates. The current work scope includes drilling and coring one well on Anadarko leases in FY 2003 during the winter drilling season. A specially built on-site core analysis laboratory will be used to determine some of the physical characteristics of the hydrates and surrounding rock. Prior to going to the field, the project team designed and conducted a controlled series of coring tests for simulating coring of hydrate formations. A variety of equipment and procedures were tested and modified to develop a practical solution for this special application. This Topical Report summarizes these coring tests. A special facility was designed and installed at MTI's Drilling Research Center (DRC) in Houston and used to conduct coring tests. Equipment and procedures were tested by cutting cores from frozen mixtures of sand and water supported by casing and designed to simulate hydrate formations. Tests were conducted with chilled drilling fluids. Tests showed that frozen core can be washed out and reduced in size by the action of the drilling fluid. Washing of the core by the drilling fluid caused a reduction in core diameter, making core recovery very difficult (if not impossible). One successful solution was to drill the last 6 inches of core dry (without fluid circulation). These tests demonstrated that it will be difficult to capture core when drilling in permafrost or hydrates without implementing certain safeguards. Among the coring tests was a simulated hydrate

Genetic studies on the South African Mutton Merino: growth traits

African Journals Online (AJOL)

Unknown

breed has undergone such a metamorphosis that it no longer bears much, if any, resemblance to its European ancestor. The need for a separate genetic characterization of this distinct South African strain is therefore evident. The aim of this study was to determine the applicable non-genetic factors and to estimate genetic ...

Genetical metabolomics in apples (Malus x domestica Borkh)

NARCIS (Netherlands)

Khan, S.A.

2012-01-01

The aim of this thesis was finding genes that control the production of potentially health beneficial metabolites in apple fruits. The approach was genetic mapping of secondary metabolites such as phenolic compounds in an F1 progeny, leading to the detection of genetic loci that controlled these

Morphological and molecular genetic diversity of Syrian indigenous ...

African Journals Online (AJOL)

Domestic goats in Syria may provide an interesting source of genetic variability due to its proximity to the centers of domestication. This study aimed to assess the morphological variation, genetic diversity and population substructure of the Syrian goat populations. Commonly, three goat genotypes are distinguished in Syria, ...

Current status of relativistic core collapse simulations

Energy Technology Data Exchange (ETDEWEB)

Font, Jose A [Departamento de Astronomia y Astrofisica, Universidad de Valencia, Dr. Moliner 50, 46100 Burjassot (Valencia) (Spain)

2007-05-15

With the first generation of ground-based gravitational wave laser interferometers already taking data, the availability of reliable waveform templates from astrophysical sources, which may help extract the signal from the anticipated noisy data, is urgently required. Gravitational stellar core collapse supernova has traditionally been considered among the most important astrophysical sources of potentially detectable gravitational radiation. Only very recently the first multidimensional simulations of relativistic rotational core collapse have been possible (albeit for models with simplified input physics), thanks to the use of conservative formulations of the hydrodynamics equations and advanced numerical methodology, as well as stable formulations of Einstein's equations. In this paper, the current status of relativistic core collapse simulations is discussed, with the emphasis given to the modelling of the collapse dynamics and to the computation of the gravitational radiation in the existing numerical approaches. Work employing the conformally-flat approximation (CFC) of the 3+1 Einstein's equations is reported, as well as extensions of this approximation (CFC+) and investigations within the framework of the so-called BSSN formulation of the 3+1 gravitational field equations (with no approximation for the spacetime dynamics). On the other hand, the incorporation of magnetic fields and the MHD equations in numerical codes to improve the realism of core collapse simulations in general relativity, is currently an emerging field where significant progress is bound to be soon achieved. The paper also contains a brief discussion of magneto-rotational simulations of core collapse, aiming at addressing the effects of magnetic fields on the collapse dynamics and on the gravitational waveforms.

Current status of relativistic core collapse simulations

International Nuclear Information System (INIS)

Font, Jose A

2007-01-01

With the first generation of ground-based gravitational wave laser interferometers already taking data, the availability of reliable waveform templates from astrophysical sources, which may help extract the signal from the anticipated noisy data, is urgently required. Gravitational stellar core collapse supernova has traditionally been considered among the most important astrophysical sources of potentially detectable gravitational radiation. Only very recently the first multidimensional simulations of relativistic rotational core collapse have been possible (albeit for models with simplified input physics), thanks to the use of conservative formulations of the hydrodynamics equations and advanced numerical methodology, as well as stable formulations of Einstein's equations. In this paper, the current status of relativistic core collapse simulations is discussed, with the emphasis given to the modelling of the collapse dynamics and to the computation of the gravitational radiation in the existing numerical approaches. Work employing the conformally-flat approximation (CFC) of the 3+1 Einstein's equations is reported, as well as extensions of this approximation (CFC+) and investigations within the framework of the so-called BSSN formulation of the 3+1 gravitational field equations (with no approximation for the spacetime dynamics). On the other hand, the incorporation of magnetic fields and the MHD equations in numerical codes to improve the realism of core collapse simulations in general relativity, is currently an emerging field where significant progress is bound to be soon achieved. The paper also contains a brief discussion of magneto-rotational simulations of core collapse, aiming at addressing the effects of magnetic fields on the collapse dynamics and on the gravitational waveforms

NCI Core Open House Shines Spotlight on Supportive Science and Basic Research | Poster

Science.gov (United States)

The lobby of Building 549 at NCI at Frederick bustled with activity for two hours on Tuesday, May 1, as several dozen scientists and staff gathered for the NCI Core Open House. The event aimed to encourage discussion and educate visitors about the capabilities of the cores, laboratories, and facilities that offer support to NCI’s Center for Cancer Research.

Genetic Resources in the “Calabaza Pipiana” Squash (Cucurbita argyrosperma) in Mexico: Genetic Diversity, Genetic Differentiation and Distribution Models

Science.gov (United States)

Sánchez-de la Vega, Guillermo; Castellanos-Morales, Gabriela; Gámez, Niza; Hernández-Rosales, Helena S.; Vázquez-Lobo, Alejandra; Aguirre-Planter, Erika; Jaramillo-Correa, Juan P.; Montes-Hernández, Salvador; Lira-Saade, Rafael; Eguiarte, Luis E.

2018-01-01

Analyses of genetic variation allow understanding the origin, diversification and genetic resources of cultivated plants. Domesticated taxa and their wild relatives are ideal systems for studying genetic processes of plant domestication and their joint is important to evaluate the distribution of their genetic resources. Such is the case of the domesticated subspecies C. argyrosperma ssp. argyrosperma, known in Mexico as calabaza pipiana, and its wild relative C. argyrosperma ssp. sororia. The main aim of this study was to use molecular data (microsatellites) to assess the levels of genetic variation and genetic differentiation within and among populations of domesticated argyrosperma across its distribution in Mexico in comparison to its wild relative, sororia, and to identify environmental suitability in previously proposed centers of domestication. We analyzed nine unlinked nuclear microsatellite loci to assess levels of diversity and distribution of genetic variation within and among populations in 440 individuals from 19 populations of cultivated landraces of argyrosperma and from six wild populations of sororia, in order to conduct a first systematic analysis of their genetic resources. We also used species distribution models (SDMs) for sororia to identify changes in this wild subspecies’ distribution from the Holocene (∼6,000 years ago) to the present, and to assess the presence of suitable environmental conditions in previously proposed domestication sites. Genetic variation was similar among subspecies (HE = 0.428 in sororia, and HE = 0.410 in argyrosperma). Nine argyrosperma populations showed significant levels of inbreeding. Both subspecies are well differentiated, and genetic differentiation (FST) among populations within each subspecies ranged from 0.152 to 0.652. Within argyrosperma we found three genetic groups (Northern Mexico, Yucatan Peninsula, including Michoacan and Veracruz, and Pacific coast plus Durango). We detected low levels of gene

Genetic Resources in the “Calabaza Pipiana” Squash (Cucurbita argyrosperma in Mexico: Genetic Diversity, Genetic Differentiation and Distribution Models

Directory of Open Access Journals (Sweden)

Guillermo Sánchez-de la Vega

2018-03-01

Full Text Available Analyses of genetic variation allow understanding the origin, diversification and genetic resources of cultivated plants. Domesticated taxa and their wild relatives are ideal systems for studying genetic processes of plant domestication and their joint is important to evaluate the distribution of their genetic resources. Such is the case of the domesticated subspecies C. argyrosperma ssp. argyrosperma, known in Mexico as calabaza pipiana, and its wild relative C. argyrosperma ssp. sororia. The main aim of this study was to use molecular data (microsatellites to assess the levels of genetic variation and genetic differentiation within and among populations of domesticated argyrosperma across its distribution in Mexico in comparison to its wild relative, sororia, and to identify environmental suitability in previously proposed centers of domestication. We analyzed nine unlinked nuclear microsatellite loci to assess levels of diversity and distribution of genetic variation within and among populations in 440 individuals from 19 populations of cultivated landraces of argyrosperma and from six wild populations of sororia, in order to conduct a first systematic analysis of their genetic resources. We also used species distribution models (SDMs for sororia to identify changes in this wild subspecies’ distribution from the Holocene (∼6,000 years ago to the present, and to assess the presence of suitable environmental conditions in previously proposed domestication sites. Genetic variation was similar among subspecies (HE = 0.428 in sororia, and HE = 0.410 in argyrosperma. Nine argyrosperma populations showed significant levels of inbreeding. Both subspecies are well differentiated, and genetic differentiation (FST among populations within each subspecies ranged from 0.152 to 0.652. Within argyrosperma we found three genetic groups (Northern Mexico, Yucatan Peninsula, including Michoacan and Veracruz, and Pacific coast plus Durango. We detected low

Core outcome sets in dermatology: report from the second meeting of the International Cochrane Skin Group Core Outcome Set Initiative.

Science.gov (United States)

Kottner, J; Jacobi, L; Hahnel, E; Alam, M; Balzer, K; Beeckman, D; Busard, C; Chalmers, J; Deckert, S; Eleftheriadou, V; Furlan, K; Horbach, S E R; Kirkham, J; Nast, A; Spuls, P; Thiboutot, D; Thorlacius, L; Weller, K; Williams, H C; Schmitt, J

2018-04-01

Results of clinical trials are the most important information source for generating external clinical evidence. The use of different outcomes across trials, which investigate similar interventions for similar patient groups, significantly limits the interpretation, comparability and clinical application of trial results. Core outcome sets (COSs) aim to overcome this limitation. A COS is an agreed standardized collection of outcomes that should be measured and reported in all clinical trials for a specific clinical condition. The Core Outcome Set Initiative within the Cochrane Skin Group (CSG-COUSIN) supports the development of core outcomes in dermatology. In the second CSG-COUSIN meeting held in 2017, 11 COS development groups working on skin diseases presented their current work. The presentations and discussions identified the following overarching methodological challenges for COS development in dermatology: it is not always easy to define the disease focus of a COS; the optimal method for outcome domain identification and level of detail needed to specify such domains is challenging to many; decision rules within Delphi surveys need to be improved; appropriate ways of patient involvement are not always clear. In addition, there appear to be outcome domains that may be relevant as potential core outcome domains for the majority of skin diseases. The close collaboration between methodologists in the Core Outcome Set Initiative and the international Cochrane Skin Group has major advantages for trialists, systematic reviewers and COS developers. © 2018 British Association of Dermatologists.

Rotary core drills

Energy Technology Data Exchange (ETDEWEB)

1967-11-30

The design of a rotary core drill is described. Primary consideration is given to the following component parts of the drill: the inner and outer tube, the core bit, an adapter, and the core lifter. The adapter has the form of a downward-converging sleeve and is mounted to the lower end of the inner tube. The lifter, extending from the adapter, is split along each side so that it can be held open to permit movement of a core. It is possible to grip a core by allowing the lifter to assume a closed position.

Metallic nanoshells with semiconductor cores: optical characteristics modified by core medium properties.

Science.gov (United States)

Bardhan, Rizia; Grady, Nathaniel K; Ali, Tamer; Halas, Naomi J

2010-10-26

It is well-known that the geometry of a nanoshell controls the resonance frequencies of its plasmon modes; however, the properties of the core material also strongly influence its optical properties. Here we report the synthesis of Au nanoshells with semiconductor cores of cuprous oxide and examine their optical characteristics. This material system allows us to systematically examine the role of core material on nanoshell optical properties, comparing Cu(2)O core nanoshells (ε(c) ∼ 7) to lower core dielectric constant SiO(2) core nanoshells (ε(c) = 2) and higher dielectric constant mixed valency iron oxide nanoshells (ε(c) = 12). Increasing the core dielectric constant increases nanoparticle absorption efficiency, reduces plasmon line width, and modifies plasmon energies. Modifying the core medium provides an additional means of tailoring both the near- and far-field optical properties in this unique nanoparticle system.

Proteomics Core

Data.gov (United States)

Federal Laboratory Consortium — Proteomics Core is the central resource for mass spectrometry based proteomics within the NHLBI. The Core staff help collaborators design proteomics experiments in a...

The genetic validation of heterogeneity in schizophrenia

Directory of Open Access Journals (Sweden)

Moritani Makiko

2011-10-01

Full Text Available Abstract Introduction Schizophrenia is a heritable disorder, however clear genetic architecture has not been detected. To overcome this state of uncertainty, the SZGene database has been established by including all published case-control genetic association studies appearing in peer-reviewed journals. In the current study, we aimed to determine if genetic variants strongly suggested by SZGene are associated with risk of schizophrenia in our case-control samples of Japanese ancestry. In addition, by employing the additive model for aggregating the effect of seven variants, we aimed to verify the genetic heterogeneity of schizophrenia diagnosed by an operative diagnostic manual, the DSM-IV. Methods Each positively suggested genetic polymorphism was ranked according to its p-value, then the seven top-ranked variants (p Results No statistically significant deviation between cases and controls was observed in the genetic risk-index derived from all seven variants on the top-ranked polymorphisms. In fact, the average risk-index score in the schizophrenia group (6.5+/-1.57 was slightly lower than among controls (6.6+/-1.39. Conclusion The current work illustrates the difficulty in identifying universal and definitive risk-conferring polymorphisms for schizophrenia. Our employed number of samples was small, so we can not preclude the possibility that some or all of these variants are minor risk factors for schizophrenia in the Japanese population. It is also important to aggregate the updated positive variants in the SZGene database when the replication work is conducted.

[Prospect and application of microsatellite population genetics in study of geoherbs].

Science.gov (United States)

Zhang, Wen-Jing; Zhang, Yong-Qing; Yuan, Qing-Jun; Huang, Lu-Qi; Jiang, Dan; Jing, Li

2013-12-01

The author introduces the basic concepts of microsatellite and population genetics and its characteristics, expounds the application of these theories for population genetic structure and genetic diversity, gene flow and evolutionary significant unit ESU division research. This paper discuss its applicationin study of genetic causes, origin of cultivation, different regional origins of geoherbs, aiming at providing a new theory and method for geoherbs.

Data archiving system implementation in ITER's CODAC Core System

International Nuclear Information System (INIS)

Castro, R.; Abadie, L.; Makushok, Y.; Ruiz, M.; Sanz, D.; Vega, J.; Faig, J.; Román-Pérez, G.; Simrock, S.; Makijarvi, P.

2015-01-01

Highlights: • Implementation of ITER's data archiving solution. • Integration of the solution into CODAC Core System. • Data archiving structure. • High efficient data transmission into fast plant system controllers. • Fast control and data acquisition in Linux. - Abstract: The aim of this work is to present the implementation of data archiving in ITER's CODAC Core System software. This first approach provides a client side API and server side software allowing the creation of a simplified version of ITERDB data archiving software, and implements all required elements to complete data archiving flow from data acquisition until its persistent storage technology. The client side includes all necessary components that run on devices that acquire or produce data, distributing and streaming to configure remote archiving servers. The server side comprises an archiving service that stores into HDF5 files all received data. The archiving solution aims at storing data coming for the data acquisition system, the conventional control and also processed/simulated data.

Identification of novel genetic markers of breast cancer survival

NARCIS (Netherlands)

Q. Guo (Qi); M.K. Schmidt (Marjanka); P. Kraft (Peter); S. Canisius (Sander); C. Chen (Constance); S. Khan (Sofia); J.P. Tyrer (Jonathan); M.K. Bolla (Manjeet); Q. Wang (Qing); J. Dennis (Joe); K. Michailidou (Kyriaki); M. Lush (Michael); S. Kar (Siddhartha); J. Beesley (Jonathan); A.M. Dunning (Alison); M. Shah (Mitul); K. Czene (Kamila); H. Darabi (Hatef); M. Eriksson (Mikael); D. Lambrechts (Diether); C. Weltens (Caroline); K. Leunen; S.E. Bojesen (Stig); B.G. Nordestgaard (Børge); S.F. Nielsen (Sune); H. Flyger (Henrik); J. Chang-Claude (Jenny); A. Rudolph (Anja); P. Seibold (Petra); D. Flesch-Janys (Dieter); C. Blomqvist (Carl); K. Aittomäki (Kristiina); R. Fagerholm (Rainer); T.A. Muranen (Taru); F.J. Couch (Fergus); J.E. Olson (Janet); C. Vachon (Celine); I.L. Andrulis (Irene); J.A. Knight (Julia); G. Glendon (Gord); A.-M. Mulligan (Anna-Marie); A. Broeks (Annegien); F.B.L. Hogervorst (Frans); C.A. Haiman (Christopher); B.E. Henderson (Brian); F.R. Schumacher (Fredrick); L. Le Marchand (Loic); J. Hopper (John); H. Tsimiklis (Helen); C. Apicella (Carmel); M.C. Southey (Melissa); A. Cox (Angela); S.S. Cross (Simon); M.W.R. Reed (Malcolm); G.G. Giles (Graham G.); R.L. Milne (Roger L.); C.A. McLean (Catriona Ann); R. Winqvist (Robert); K. Pykäs (Katri); A. Jukkola-Vuorinen (Arja); M. Grip (Mervi); M.J. Hooning (Maartje); A. Hollestelle (Antoinette); J.W.M. Martens (John W. M.); A.M.W. van den Ouweland (Ans); F. Marme (Federick); A. Schneeweiss (Andreas); R. Yang (Rongxi); B. Burwinkel (Barbara); J.D. Figueroa (Jonine); S.J. Chanock (Stephen); J. Lissowska (Jolanta); E.J. Sawyer (Elinor); I.P. Tomlinson (Ian); M. Kerin (Michael); N. Miller (Nicola); H. Brenner (Hermann); A.K. Dieffenbach (Aida Karina); V. Arndt (Volker); B. Holleczek (B.); A. Mannermaa (Arto); V. Kataja (Vesa); V-M. Kosma (Veli-Matti); J.M. Hartikainen (J.); J. Li (Jingmei); J.S. Brand (Judith S.); M.K. Humphreys (Manjeet); P. Devilee (Peter); R.A.E.M. Tollenaar (Rob); C.M. Seynaeve (Caroline); P. Radice (Paolo); P. Peterlongo (Paolo); B. Bonnani (Bernardo); P. Mariani (Paolo); P.A. Fasching (Peter); M.W. Beckmann (Matthias); R. Hein (Rebecca); A.B. Ekici (Arif); G. Chenevix-Trench (Georgia); R. Balleine (Rosemary); K.-A. Phillips (Kelly-Anne); J. Benítez (Javier); M.P. Zamora (Pilar); J.I. Arias Pérez (José Ignacio); P. Menéndez (Primitiva); A. Jakubowska (Anna); J. Lubinski (Jan); K. Jaworska-Bieniek (Katarzyna); K. Durda (Katarzyna); U. Hamann (Ute); M. Kabisch (Maria); H.U. Ulmer (Hans); T. Rud̈iger (Thomas); S. Margolin (Sara); V. Kristensen (Vessela); S. Nord (Silje); D.G. Evans (Gareth); J. Abraham (Jean); H. Earl (Helena); L. Hiller (Louise); J.A. Dunn (J.); S. Bowden (Sarah); C.D. Berg (Christine); D. Campa (Daniele); W.R. Diver (Ryan); S.M. Gapstur (Susan M.); M.M. Gaudet (Mia); S.E. Hankinson (Susan); R.N. Hoover (Robert); A. Hüsing (Anika); R. Kaaks (Rudolf); M.J. Machiela (Mitchell J.); W.C. Willett (Walter C.); M. Barrdahl (Myrto); F. Canzian (Federico); S.-F. Chin (Suet-Feung); C. Caldas (Carlos); D. Hunter (David); S. Lindstrom (Stephen); M. García-Closas (Montserrat); P. Hall (Per); D.F. Easton (Douglas); D. Eccles (Diana); N. Rahman (Nazneen); H. Nevanlinna (Heli); P.D.P. Pharoah (Paul)

2015-01-01

textabstractBackground: Survival after a diagnosis of breast cancer varies considerably between patients, and some of this variation may be because of germline genetic variation. We aimed to identify genetic markers associated with breast cancer-specific survival. Methods: We conducted a large

A core performance study on an actinide recycling 'zero-sodium-void worth' core

International Nuclear Information System (INIS)

Kawashima, M.; Nakagawa, M.; Yamaoka, M.; Kasahara, F.

1994-01-01

A core performance study was made for an absorber-type parfait core (A-APC) as one of 'Zero-sodium-void-worth' core concepts. This evaluation study pursued different two aspects; one for transuranic (TRU) management strategy, and another for a loss-of-coolant anticipated transient behavior considering the unique core configuration. The results indicated that this core has a large flexibility for actinide recycling in terms of self-sufficiency and minor actinide burning. The result also showed that this core has kept a large mitigation potential for ULOF events as well as a simple flat core concept, reflecting detailed three dimensional core bowing behavior for the A-APC configuration. (author)

Preliminaries on core image analysis using fault drilling samples; Core image kaiseki kotohajime (danso kussaku core kaisekirei)

Energy Technology Data Exchange (ETDEWEB)

Miyazaki, T; Ito, H [Geological Survey of Japan, Tsukuba (Japan)

1996-05-01

This paper introduces examples of image data analysis on fault drilling samples. The paper describes the following matters: core samples used in the analysis are those obtained from wells drilled piercing the Nojima fault which has moved in the Hygoken-Nanbu Earthquake; the CORESCAN system made by DMT Corporation, Germany, used in acquiring the image data consists of a CCD camera, a light source and core rotation mechanism, and a personal computer, its resolution being about 5 pixels/mm in both axial and circumferential directions, and 24-bit full color; with respect to the opening fractures in core samples collected by using a constant azimuth coring, it was possible to derive values of the opening width, inclination angle, and travel from the image data by using a commercially available software for the personal computer; and comparison of this core image with the BHTV record and the hydrophone VSP record (travel and inclination obtained from the BHTV record agree well with those obtained from the core image). 4 refs., 4 figs.

Toroidal HTS transformer with cold magnetic core - analysis with FEM software

International Nuclear Information System (INIS)

Grzesik, B; Stepien, M; Jez, R

2010-01-01

The aim of this paper is to present a thorough characterization of the toroidal HTS transformer by means of FEM analysis. The analysis was a 2D/3D harmonic electromagnetic and thermal analysis. The toroidal transformer operated in LN2 by being immersed together with the magnetic core in it, for which its power losses were acceptable. Two extreme variants of windings were analysed. The first one called parallel and the second called perpendicular. Three variants of the magnetic core were considered. In the first one the core was put outside of the windings, in the second the core was inside of the windings and in the third variant the core was outside as well as inside of the windings. The windings were made of HTS tape BiSCCO-2223/Ag while the magnetic core was made of the nanocrystalline material Finemet. The two windings, with a 1:1 turn-to-turn ratio, were uniformly distributed along the whole torus circumference. The output power, efficiency and power density are in the results of the analysis. The temperature distribution was also calculated. In summary, the performance of the transformer is better than those currently known.

Distributed genetic process mining

NARCIS (Netherlands)

Bratosin, C.C.; Sidorova, N.; Aalst, van der W.M.P.

2010-01-01

Process mining aims at discovering process models from data logs in order to offer insight into the real use of information systems. Most of the existing process mining algorithms fail to discover complex constructs or have problems dealing with noise and infrequent behavior. The genetic process

A network of genes, genetic disorders, and brain areas.

Directory of Open Access Journals (Sweden)

Satoru Hayasaka

Full Text Available The network-based approach has been used to describe the relationship among genes and various phenotypes, producing a network describing complex biological relationships. Such networks can be constructed by aggregating previously reported associations in the literature from various databases. In this work, we applied the network-based approach to investigate how different brain areas are associated to genetic disorders and genes. In particular, a tripartite network with genes, genetic diseases, and brain areas was constructed based on the associations among them reported in the literature through text mining. In the resulting network, a disproportionately large number of gene-disease and disease-brain associations were attributed to a small subset of genes, diseases, and brain areas. Furthermore, a small number of brain areas were found to be associated with a large number of the same genes and diseases. These core brain regions encompassed the areas identified by the previous genome-wide association studies, and suggest potential areas of focus in the future imaging genetics research. The approach outlined in this work demonstrates the utility of the network-based approach in studying genetic effects on the brain.

Heuristic rules embedded genetic algorithm to solve VVER loading pattern optimization problem

International Nuclear Information System (INIS)

Fatih, Alim; Kostandi, Ivanov

2006-01-01

Full text: Loading Pattern (LP) optimization is one of the most important aspects of the operation of nuclear reactors. A genetic algorithm (GA) code GARCO (Genetic Algorithm Reactor Optimization Code) has been developed with embedded heuristic techniques to perform optimization calculations for in-core fuel management tasks. GARCO is a practical tool that includes a unique methodology applicable for all types of Pressurized Water Reactor (PWR) cores having different geometries with an unlimited number of FA types in the inventory. GARCO was developed by modifying the classical representation of the genotype. Both the genotype representation and the basic algorithm have been modified to incorporate the in-core fuel management heuristics rules so as to obtain the best results in a shorter time. GARCO has three modes. Mode 1 optimizes the locations of the fuel assemblies (FAs) in the nuclear reactor core, Mode 2 optimizes the placement of the burnable poisons (BPs) in a selected LP, and Mode 3 optimizes simultaneously both the LP and the BP placement in the core. This study describes the basic algorithm for Mode 1. The GARCO code is applied to the VVER-1000 reactor hexagonal geometry core in this study. The M oby-Dick i s used as reactor physics code to deplete FAs in the core. It was developed to analyze the VVER reactors by SKODA Inc. To use these rules for creating the initial population with GA operators, the worth definition application is developed. Each FA has a worth value for each location. This worth is between 0 and 1. If worth of any FA for a location is larger than 0.5, this FA in this location is a good choice. When creating the initial population of LPs, a subroutine provides a percent of individuals, which have genes with higher than the 0.5 worth. The percentage of the population to be created without using worth definition is defined in the GARCO input. And also age concept has been developed to accelerate the GA calculation process in reaching the

Pan-European strategy for genetic conservation of forest trees and establishment of a core network of dynamic conservation units

NARCIS (Netherlands)

Vries, de S.M.G.; Alan, Murat; Bozzano, Michele; Burianek, Vaclav

2015-01-01

The diversity of forests, at the level of species and at the level of genetic diversity within species, is an important resource for Europe. Over the past several decades European countries have made considerable efforts to conserve the genetic diversity of tree species. According to the EUFGIS

Age of Jupiter inferred from the distinct genetics and formation times of meteorites.

Science.gov (United States)

Kruijer, Thomas S; Burkhardt, Christoph; Budde, Gerrit; Kleine, Thorsten

2017-06-27

The age of Jupiter, the largest planet in our Solar System, is still unknown. Gas-giant planet formation likely involved the growth of large solid cores, followed by the accumulation of gas onto these cores. Thus, the gas-giant cores must have formed before dissipation of the solar nebula, which likely occurred within less than 10 My after Solar System formation. Although such rapid accretion of the gas-giant cores has successfully been modeled, until now it has not been possible to date their formation. Here, using molybdenum and tungsten isotope measurements on iron meteorites, we demonstrate that meteorites derive from two genetically distinct nebular reservoirs that coexisted and remained spatially separated between ∼1 My and ∼3-4 My after Solar System formation. The most plausible mechanism for this efficient separation is the formation of Jupiter, opening a gap in the disk and preventing the exchange of material between the two reservoirs. As such, our results indicate that Jupiter's core grew to ∼20 Earth masses within Jupiter is the oldest planet of the Solar System, and its solid core formed well before the solar nebula gas dissipated, consistent with the core accretion model for giant planet formation.

[Quality assurance in human genetic testing].

Science.gov (United States)

Stuhrmann-Spangenberg, Manfred

2015-02-01

Advances in technical developments of genetic diagnostics for more than 50 years, as well as the fact that human genetic testing is usually performed only once in a lifetime, with additional impact for blood relatives, are determining the extraordinary importance of quality assurance in human genetic testing. Abidance of laws, directives, and guidelines plays a major role. This article aims to present the major laws, directives, and guidelines with respect to quality assurance of human genetic testing, paying careful attention to internal and external quality assurance. The information on quality assurance of human genetic testing was obtained through a web-based search of the web pages that are referred to in this article. Further information was retrieved from publications in the German Society of Human Genetics and through a PubMed-search using term quality + assurance + genetic + diagnostics. The most important laws, directives, and guidelines for quality assurance of human genetic testing are the gene diagnostics law (GenDG), the directive of the Federal Medical Council for quality control of clinical laboratory analysis (RiliBÄK), and the S2K guideline for human genetic diagnostics and counselling. In addition, voluntary accreditation under DIN EN ISO 15189:2013 offers a most recommended contribution towards quality assurance of human genetic testing. Legal restraints on quality assurance of human genetic testing as mentioned in § 5 GenDG are fulfilled once RiliBÄK requirements are followed.

Sidewall coring shell

Energy Technology Data Exchange (ETDEWEB)

Edelman, Ya A; Konstantinov, L P; Martyshin, A N

1966-12-12

A sidewall coring shell consists of a housing and a detachable core catcher. The core lifter is provided with projections, the ends of which are situated in another plane, along the longitudinal axis of the lifter. The chamber has corresponding projections.

Integral Full Core Multi-Physics PWR Benchmark with Measured Data

Energy Technology Data Exchange (ETDEWEB)

Forget, Benoit; Smith, Kord; Kumar, Shikhar; Rathbun, Miriam; Liang, Jingang

2018-04-11

In recent years, the importance of modeling and simulation has been highlighted extensively in the DOE research portfolio with concrete examples in nuclear engineering with the CASL and NEAMS programs. These research efforts and similar efforts worldwide aim at the development of high-fidelity multi-physics analysis tools for the simulation of current and next-generation nuclear power reactors. Like all analysis tools, verification and validation is essential to guarantee proper functioning of the software and methods employed. The current approach relies mainly on the validation of single physic phenomena (e.g. critical experiment, flow loops, etc.) and there is a lack of relevant multiphysics benchmark measurements that are necessary to validate high-fidelity methods being developed today. This work introduces a new multi-cycle full-core Pressurized Water Reactor (PWR) depletion benchmark based on two operational cycles of a commercial nuclear power plant that provides a detailed description of fuel assemblies, burnable absorbers, in-core fission detectors, core loading and re-loading patterns. This benchmark enables analysts to develop extremely detailed reactor core models that can be used for testing and validation of coupled neutron transport, thermal-hydraulics, and fuel isotopic depletion. The benchmark also provides measured reactor data for Hot Zero Power (HZP) physics tests, boron letdown curves, and three-dimensional in-core flux maps from 58 instrumented assemblies. The benchmark description is now available online and has been used by many groups. However, much work remains to be done on the quantification of uncertainties and modeling sensitivities. This work aims to address these deficiencies and make this benchmark a true non-proprietary international benchmark for the validation of high-fidelity tools. This report details the BEAVRS uncertainty quantification for the first two cycle of operations and serves as the final report of the project.

Genetic Counselors in Startup Companies: Redefining the Genetic Counselor Role.

Science.gov (United States)

Rabideau, Marina M; Wong, Kenny; Gordon, Erynn S; Ryan, Lauren

2016-08-01

Genetic counselors (GCs) have recently begun moving into non-clinic based roles in increasing numbers. A relatively new role for GCs is working for startup companies. Startups are newly established companies in the phase of developing and researching new scalable businesses. This article explores the experiences of four GCs working at different startup companies and aims to provide resources for GCs interested in learning more about these types of roles. The article describes startup culture, including a relatively flat organizational structure, quick product iterations, and flexibility, among other unique cultural characteristics. Financial considerations are described, including how to understand and evaluate a company's financial status, along with a brief explanation of alternate forms of compensation including stock options and equity. Specifically, the article details the uncertainties and rewards of working in a fast-paced startup environment that affords opportunities to try new roles and use the genetic counseling skill set in new ways. This article aims to aid GCs in determining whether a startup environment would be a good fit, learning how to evaluate a specific startup, and understanding how to market themselves for positions at startups.

AN ADAPTIVE ACO-DRIVEN SCHEME FOR LEARNING AIM ORIENTED PERSONALIZED E-LEARNING

Directory of Open Access Journals (Sweden)

Sushma Hans

2014-10-01

Full Text Available The e-learning paradigm is now a well-established vehicle of modern education. It caters to a wide spectrum of students with diverse backgrounds who enroll with their own learning aims. A core challenge under this scenario is to generate personalized learning paths so that each student can achieve her learning aim most effectively. Prior works used static attributes such as prior knowledge level, learning ability, browsing preferences, learning style etc. to generate personalized learning paths. In this paper, we take an entirely new route by taking into account the continuous improvement of a learner in the light of her own learning aim, to redefine her learning path at each level of the course. We introduce the concept of personalized examination system that systematically evaluates the dynamic learning ability of every student according to her pre-set goals. The proposed intelligent e-learning system uses Ant Colony Optimization to iteratively optimize the forward learning paths. Experimental results reveal that the system is able to tap a student’s improved learning ability to choose more difficult paths that contribute highly towards her own aims. We demonstrate that the overall learning success of weaker students doubles as compared to statically generated paths while there is considerable improvement of 50% in the learning success for average students as well. This clearly indicates that our approach gives realistic benefits to initially weak students who gradually evolve as the course progresses.

Efficiency of deep core muscles training on patients with low back pain

OpenAIRE

Povilauskaitė, Ieva

2017-01-01

Efficiency of Deep Core Muscles Training on Patients with Low Back Pain Vilnius University Faculty of Medicine Department of Rehabilitation, Physical and Sports Medicine Bachelor Degree of Physiotherapy Efficiency of Deep Core Muscles Strengthening Exercises on Patients with Low Back Pain Physiotherapy Bachelor's Thesis The Author: Ieva Povilauskaitė Academic advisor: Lecturer dr. Ieva Eglė Jamontaitė The aim of research work: measure the efficiency of come muscles strengthening exercises in ...

Update. Biotechnologists Aim to Shoot Plants.

Science.gov (United States)

Sheerman, Suzanne

1990-01-01

Reviewed are some of the techniques being used in plant biotechnology laboratories. Described are tissue culture and genetic manipulation. Advantages and disadvantages of this approach and ethics and public concern issues are discussed. (CW)

Electromagnetically driven westward drift and inner-core superrotation in Earth's core.

Science.gov (United States)

Livermore, Philip W; Hollerbach, Rainer; Jackson, Andrew

2013-10-01

A 3D numerical model of the earth's core with a viscosity two orders of magnitude lower than the state of the art suggests a link between the observed westward drift of the magnetic field and superrotation of the inner core. In our model, the axial electromagnetic torque has a dominant influence only at the surface and in the deepest reaches of the core, where it respectively drives a broad westward flow rising to an axisymmetric equatorial jet and imparts an eastward-directed torque on the solid inner core. Subtle changes in the structure of the internal magnetic field may alter not just the magnitude but the direction of these torques. This not only suggests that the quasi-oscillatory nature of inner-core superrotation [Tkalčić H, Young M, Bodin T, Ngo S, Sambridge M (2013) The shuffling rotation of the earth's inner core revealed by earthquake doublets. Nat Geosci 6:497-502.] may be driven by decadal changes in the magnetic field, but further that historical periods in which the field exhibited eastward drift were contemporaneous with a westward inner-core rotation. The model further indicates a strong internal shear layer on the tangent cylinder that may be a source of torsional waves inside the core.

Nuclear reactors project optimization based on neural network and genetic algorithm; Otimizacao em projetos de reatores nucleares baseada em rede neural e algoritmo genetico

Energy Technology Data Exchange (ETDEWEB)

Pereira, Claudio M.N.A. [Instituto de Engenharia Nuclear (IEN), Rio de Janeiro, RJ (Brazil); Schirru, Roberto; Martinez, Aquilino S. [Universidade Federal, Rio de Janeiro, RJ (Brazil). Coordenacao dos Programas de Pos-graduacao de Engenharia

1997-12-01

This work presents a prototype of a system for nuclear reactor core design optimization based on genetic algorithms and artificial neural networks. A neural network is modeled and trained in order to predict the flux and the neutron multiplication factor values based in the enrichment, network pitch and cladding thickness, with average error less than 2%. The values predicted by the neural network are used by a genetic algorithm in this heuristic search, guided by an objective function that rewards the high flux values and penalizes multiplication factors far from the required value. Associating the quick prediction - that may substitute the reactor physics calculation code - with the global optimization capacity of the genetic algorithm, it was obtained a quick and effective system for nuclear reactor core design optimization. (author). 11 refs., 8 figs., 3 tabs.

Improving the calculated core stability by the core nuclear design optimization

International Nuclear Information System (INIS)

Partanen, P.

1995-01-01

Three different equilibrium core loadings for TVO II reactor have been generated in order to improve the core stability properties at uprated power level. The reactor thermal power is assumed to be uprated from 2160 MW th to 2500 MW th , which moves the operating point after a rapid pump rundown where the core stability has been calculated from 1340 MW th and 3200 kg/s to 1675 MW th and 4000 kg/s. The core has been refuelled with ABB Atom Svea-100 -fuel, which has 3,64% w/o U-235 average enrichment in the highly enriched zone. PHOENIX lattice code has been used to provide the homogenized nuclear constants. POLCA4 static core simulator has been used for core loadings and cycle simulations and RAMONA-3B program for simulating the dynamic response to the disturbance for which the stability behaviour has been evaluated. The core decay ratio has been successfully reduced from 0,83 to 0,55 mainly by reducing the power peaking factors. (orig.) (7 figs., 1 tab.)

The interaction of a core melt with concrete

International Nuclear Information System (INIS)

Reimann, M.; Holleck, H.; Skokan, A.; Perinic, D.

1977-01-01

In its fourth phase, a hypothetic core melt interacts with the concrete of the reactor foundation. This phase may last several days. Experimental laboratory investigations and theoretical models on the basis of model experiments aim at determining the time curve of the temperature of the core melt in order to quantify the processes up to the solidification of the melt and the end of concrete destroyal. Material interactions: 1) The two phases of the core melt, oxidic and metallic, remain separate for a long period of time. In dependence of the degree of oxidation of the system, the elemental distribution and, in particular, the fission products in the melt may be assessed. 2) The changes in the material values of the core melt in dependence of the temperature curve may be qualitatively assessed. 3) The solidification temperature of the oxidic phase of the core melt may be given in dependence of (UO 2 + ZrO 2 ) content. Thermal interactions: 1) The ratio vertical/radial erosion, which determines the cavity shape, is described in the correct order of magnitude by the extended film model. 2) The correct order of magnitude of the erosion rates is described by the concrete destruction model coupled with the film model. 3) The effects of the different concrete destruction enthalpies and concrete compositions (amount of gaseous decomposition products) may be estimated by the model calculations. (orig./HP) [de

Distinguishing Arrhythmogenic Right Ventricular Cardiomyopathy/Dysplasia-Associated Mutations From Background Genetic Noise

NARCIS (Netherlands)

Kapplinger, Jamie D.; Landstrom, Andrew P.; Salisbury, Benjamin A.; Callis, Thomas E.; Pollevick, Guido D.; Tester, David J.; Cox, Moniek G. P. J.; Bhuiyan, Zahir; Bikker, Hennie; Wiesfeld, Ans C. P.; Hauer, Richard N. W.; van Tintelen, J. Peter; Jongbloed, Jan D. H.; Calkins, Hugh; Judge, Daniel P.; Wilde, Arthur A. M.; Ackerman, Michael J.

2011-01-01

Objectives The aims of this study were to determine the spectrum and prevalence of "background genetic noise" in the arrhythmogenic right ventricular cardiomyopathy/dysplasia (ARVC) genetic test and to determine genetic associations that can guide the interpretation of a positive test result.

Genetic and environmental influence on asthma

DEFF Research Database (Denmark)

Skadhauge, L.R.; Christensen, Kaare; Kyvik, Kirsten Ohm

1999-01-01

The aim of this study was to estimate the relative influence of genetic and environmental factors on the aetiology of asthma. The classic twin study design was used to analyse data on self-reported asthma obtained by a questionnaire mailed to 34,076 individuals, aged 12-41 yrs and originating from...... in the monozygotic than in the dizygotic twins. Using biometric modelling, a model including additive genetic and nonshared environmental effects provided the best overall fit to the data. According to this model, 73% of the variation in liability to asthma was explained by genetic factors. No sex difference or age......-dependency in the magnitude of genetic effects was observed. The biometric analysis emphasized a major influence of genetic factors in the aetiology of asthma. However, a substantial part of the variation in liability to asthma is due to the impact of environmental factors specific to the individual. There is no evidence...

Core Values | NREL

Science.gov (United States)

Core Values Core Values NREL's core values are rooted in a safe and supportive work environment guide our everyday actions and efforts: Safe and supportive work environment Respect for the rights physical and social environment Integrity Maintain the highest standard of ethics, honesty, and integrity

Vegetable Genetic Resources in China

Directory of Open Access Journals (Sweden)

Haiping WANG

2018-03-01

Full Text Available China is recognized as an important region for plant biodiversity based on its vast and historical collection of vegetable germplasm. The aim of this review is to describe the exploration status of vegetable genetic resources in China, including their collection, preservation, evaluation, and utilization. China has established a number of national-level vegetable genetic resources preservation units, including the National Mid-term Genebank for Vegetable Germplasm Resources, the National Germplasm Repository for Vegetatively-Propagated Vegetables, and the National Germplasm Repository for Aquatic Vegetables. In 2015, at least 36 000 accessions were collected and preserved in these units. In the past decade, 44 descriptors and data standards for different species have been published, and most accessions have been evaluated for screening the germplasms for specific important traits such as morphological characteristics, disease resistance, pest resistance, and stress tolerance. Moreover, the genetic diversity and evolution of some vegetable germplasms have been evaluated at the molecular level. Recently, more than 1 000 accessions were distributed to researchers and breeders each year by various means for vegetable research and production. However, additional wild-relative and abroad germplasms from other regions need to be collected and preserved in the units to expand genetic diversity. Furthermore, there is a need to utilize advanced techniques to better understand the background and genetic diversity of a wide range of vegetable genetic resources. This review will provide agricultural scientists’ insights into the genetic diversity in China and provide information on the distribution and potential utilization of these valuable genetic resources. Keywords: vegetable, genetic resource, preservation, evaluation, utilization

Genetic Counsellors and Private Practice: Professional Turbulence and Common Values.

Science.gov (United States)

Collis, Sarah; Gaff, Clara; Wake, Samantha; McEwen, Alison

2017-12-27

Genetic counsellors face tensions between past and future identities: between established values and goals, and a broadening scope of settings and activities. This study examines the advent of genetic counsellors in private practice in Australia and New Zealand from the perspectives of the small numbers working in this sector and those who have only worked in public practice. Semi-structured interviews were conducted with 16 genetic counsellors who had experience in private practice, and 14 genetic counsellors without private sector experience. Results demonstrated that circumstantial and personal factors can mitigate the challenges experienced and the amount of support desired by those who had established a private practice, and those who were employed by private companies. Notably, most participants with private sector experience perceived themselves to be viewed negatively by other genetic counsellors. Most participants without private sector experience expressed concern that the challenges they believed genetic counsellors face in private practice may impact service quality, but wished to address such concerns by providing appropriate support. Together, our results reinforce that participants in private and public sectors are strong advocates for peer support, multidisciplinary team work, and professional development. These core values, and seeking understanding of different circumstances and support needs, will enable genetic counsellors in different sectors to move forward together. Our results suggest supports that may be acted upon by members of the profession, professional groups, and training programs, in Australia, New Zealand, and overseas.

Study of advanced LWR cores for effective use of plutonium and MOX physics experiments

International Nuclear Information System (INIS)

Yamamoto, T.; Matsu-Ura, H.; Ueji, M.; Ota, H.; Kanagawa, T.; Sakurada, K.; Maruyama, H.

1999-01-01

Advanced technologies of full MOX cores have been studied to obtain higher Pu consumption based on the advanced light water reactors (APWRs and ABWRs). For this aim, basic core designs of high moderation lattice (H/HM ∼5) have been studied with reduced fuel diameters in fuel assemblies for APWRs and those of high moderation lattice (H/HM ∼6) with addition of extra water rods in fuel assemblies for ABWRs. The analysis of equilibrium cores shows that nuclear and thermal hydraulic parameters satisfy the design criteria and the Pu consumption rate increases about 20 %. An experimental program has been carried out to obtain the core parameters of high moderation MOX cores in the EOLE critical facility at the Cadarache Centre as a joint study of NUPEC, CEA and CEA's industrial partners. The experiments include a uranium homogeneous core, two MOX homogeneous cores of different moderation and a PWR assembly mock up core of MOX fuel with high moderation. The program was started from 1996 and will be completed in 2000. (author)

Seismic core shroud

International Nuclear Information System (INIS)

Puri, A.; Mullooly, J.F.

1981-01-01

A core shroud is provided, comprising: a coolant boundary, following the shape of the core boundary, for channeling the coolant through the fuel assemblies; a cylindrical band positioned inside the core barrel and surrounding the coolant boundary; and support members extending from the coolant boundary to the band, for transferring load from the coolant boundary to the band. The shroud may be assembled in parts using automated welding techniques, and it may be adjusted to fit the reactor core easily

Genetic variance components for residual feed intake and feed ...

African Journals Online (AJOL)

Feeding costs of animals is a major determinant of profitability in livestock production enterprises. Genetic selection to improve feed efficiency aims to reduce feeding cost in beef cattle and thereby improve profitability. This study estimated genetic (co)variances between weaning weight and other production, reproduction ...

Fast reactors fuel cycle core physics results from the CAPRA-CADRA programme

Energy Technology Data Exchange (ETDEWEB)

Vasile, A.; Rimpault, G.; Tommasi, J.; Saint Jean, C. de; Delpech, M. [CEA Cadarache, 13 - Saint Paul lez Durance (France); Hesketh, K. [BNFL, Inc., Denver, CO (United States); Beaumont, H.M.; Sunderland, R.E. [NNC Ltd. (United Kingdom); Newton, T.; Smith, P. [AEA Technology (United Kingdom); Raedt, Ch. de [SCK.CEN, Mol (Belgium); Vambenepe, G. [Electricite de France (EDF), 75 - Paris (France); Lefevre, J.C. [FRAMATOME, 92 - Paris-La-Defence (France); Maschek, W.; Haas, D

2001-07-01

This paper presents an overview of fast reactor core physics results obtained in the context of the CAPRA-CADRA European collaborative programme, whose aim is to investigate a broad range of possible options for plutonium and radioactive waste management. Different types of fast reactors have been studied to evaluate their potential capabilities with respect to the long term management of plutonium, minor actinides (MAs) and long- lived fission products (LLFPs). Among the several options aiming at reducing waste and consequently radio toxicity are: homogeneous recycling of Minor Actinides, heterogeneous recycling of Minor Actinides either without or with moderation, dedicated critical cores (fuelled mainly with Minor Actinides) and Accelerator Driven System (ADS) variants. In order to achieve a detailed understanding of the potential of the various options, advanced core physics methods have been implemented and tested and applied, for example, to improving control rod modeling and to studying safety aspects. There has also been code development and experimental work carried out to improve the understanding of fuel performance behaviors. (author)

Fast reactors fuel cycle core physics results from the CAPRA-CADRA programme

International Nuclear Information System (INIS)

Vasile, A.; Rimpault, G.; Tommasi, J.; Saint Jean, C. de; Delpech, M.; Hesketh, K.; Beaumont, H.M.; Sunderland, R.E.; Newton, T.; Smith, P.; Raedt, Ch. de; Vambenepe, G.; Lefevre, J.C.; Maschek, W.; Haas, D

2001-01-01

This paper presents an overview of fast reactor core physics results obtained in the context of the CAPRA-CADRA European collaborative programme, whose aim is to investigate a broad range of possible options for plutonium and radioactive waste management. Different types of fast reactors have been studied to evaluate their potential capabilities with respect to the long term management of plutonium, minor actinides (MAs) and long- lived fission products (LLFPs). Among the several options aiming at reducing waste and consequently radio toxicity are: homogeneous recycling of Minor Actinides, heterogeneous recycling of Minor Actinides either without or with moderation, dedicated critical cores (fuelled mainly with Minor Actinides) and Accelerator Driven System (ADS) variants. In order to achieve a detailed understanding of the potential of the various options, advanced core physics methods have been implemented and tested and applied, for example, to improving control rod modeling and to studying safety aspects. There has also been code development and experimental work carried out to improve the understanding of fuel performance behaviors. (author)

[caCORE: core architecture of bioinformation on cancer research in America].

Science.gov (United States)

Gao, Qin; Zhang, Yan-lei; Xie, Zhi-yun; Zhang, Qi-peng; Hu, Zhang-zhi

2006-04-18

A critical factor in the advancement of biomedical research is the ease with which data can be integrated, redistributed and analyzed both within and across domains. This paper summarizes the Biomedical Information Core Infrastructure built by National Cancer Institute Center for Bioinformatics in America (NCICB). The main product from the Core Infrastructure is caCORE--cancer Common Ontologic Reference Environment, which is the infrastructure backbone supporting data management and application development at NCICB. The paper explains the structure and function of caCORE: (1) Enterprise Vocabulary Services (EVS). They provide controlled vocabulary, dictionary and thesaurus services, and EVS produces the NCI Thesaurus and the NCI Metathesaurus; (2) The Cancer Data Standards Repository (caDSR). It provides a metadata registry for common data elements. (3) Cancer Bioinformatics Infrastructure Objects (caBIO). They provide Java, Simple Object Access Protocol and HTTP-XML application programming interfaces. The vision for caCORE is to provide a common data management framework that will support the consistency, clarity, and comparability of biomedical research data and information. In addition to providing facilities for data management and redistribution, caCORE helps solve problems of data integration. All NCICB-developed caCORE components are distributed under open-source licenses that support unrestricted usage by both non-profit and commercial entities, and caCORE has laid the foundation for a number of scientific and clinical applications. Based on it, the paper expounds caCORE-base applications simply in several NCI projects, of which one is CMAP (Cancer Molecular Analysis Project), and the other is caBIG (Cancer Biomedical Informatics Grid). In the end, the paper also gives good prospects of caCORE, and while caCORE was born out of the needs of the cancer research community, it is intended to serve as a general resource. Cancer research has historically

Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology.

NARCIS (Netherlands)

A.F. van Belkum (Alex); M. Struelens; A. de Visser (Arjan); H.A. Verbrugh (Henri); M. Tibayrench

2001-01-01

textabstractCurrently, genetic typing of microorganisms is widely used in several major fields of microbiological research. Taxonomy, research aimed at elucidation of evolutionary dynamics or phylogenetic relationships, population genetics of microorganisms, and

Rapid reduction of hepatitis C virus-Core protein in the peripheral blood improve the immunological response in chronic hepatitis C patients.

Science.gov (United States)

Kondo, Yasuteru; Ueno, Yoshiyuki; Wakui, Yuta; Ninomiya, Masashi; Kakazu, Eiji; Inoue, Jun; Kobayashi, Koju; Obara, Noriyuki; Shimosegawa, Tooru

2011-12-01

  The extracellular hepatitis C virus (HCV)-antigen, including HCV-Core protein, can suppress immune cells. Recently, the efficacy of double filtration plasmapheresis (DFPP) for chronic hepatitis C (CHC) was reported. However, the mechanism of efficacy of DFPP might not be only the reduction of HCV but also the effect of immune cells via direct and/or indirect mechanisms. The aim of this study is to analyze the virological and immunological parameters of difficult-to-treat HCV patients treated with DFPP combined with Peg-interferon and RBV (DFPP/Peg-IFN/RBV) therapy.   Twelve CHC patients were enrolled and treated with DFPP/Peg-IFN/RBV therapy. The immunological, virological and genetic parameters were studied.   All patients (4/4) treated with the major IL28B allele (T/T) could achieve complete early virological response (EVR). The amounts of HCV-Core antigen in the peripheral blood of EVR patients treated with DFPP/Peg-IFN/RBV rapidly declined in comparison to those of late virological response (LVR) patients treated with DFPP/Peg-IFN/RBV and EVR patients treated with Peg-IFN and RBV (Peg-IFN/RBV). The amount of IFN-γ produced from peripheral blood gradually increased. On the other hand, the amount of IL10 gradually decreased in the EVR patients. The frequencies of HCV-Core binding on CD3+ T cells rapidly declined in EVR patients treated with DFPP/Peg-IFN/RBV therapy. Moreover, the distributions of activated CD4(+) and CD8(+) T cells and CD16-CD56 high natural killer cells were significantly changed between before and after DFPP.   The rapid reduction of HCV-Core antigens and changes in the distribution of lymphoid cells could contribute to the favorable immunological response during DFPP/Peg-IFN/RBV therapy. © 2011 The Japan Society of Hepatology.

Nuclear design and analysis report for KALIMER breakeven core conceptual design

International Nuclear Information System (INIS)

Kim, Sang Ji; Song, Hoon; Lee, Ki Bog; Chang, Jin Wook; Hong, Ser Gi; Kim, Young Gyun; Kim, Yeong Il

2002-04-01

During the phase 2 of LMR design technology development project, the breakeven core configuration was developed with the aim of the KALIMER self-sustaining with regard to the fissile material. The excess fissile material production is limited only to the extent of its own requirement for sustaining its planned power operation. The average breeding ratio is estimated to be 1.05 for the equilibrium core and the fissile plutonium gain per cycle is 13.9 kg. The nuclear performance characteristics as well as the reactivity coefficients have been analyzed so that the design evaluation in other activity areas can be made. In order to find out a realistic heavy metal flow evolution and investigate cycle-dependent nuclear performance parameter behaviors, the startup and transition cycle loading strategies are developed, followed by the startup core physics analysis. Driver fuel and blankets are assumed to be shuffled at the time of each reload. The startup core physics analysis has shown that the burnup reactivity swing, effective delayed neutron fraction, conversion ratio and peak linear heat generation rate at the startup core lead to an extreme of bounding physics data for safety analysis. As an outcome of this study, a whole spectrum of reactor life is first analyzed in detail for the KALIMER core. It is experienced that the startup core analysis deserves more attention than the current design practice, before the core configuration is finalized based on the equilibrium cycle analysis alone.

Analysis of different alternatives for a reactor aimed to produce Co60. Neutronic part

International Nuclear Information System (INIS)

Relloso, J.M.

1990-01-01

Different alternatives are presented for a reactor aimed to produce radioisotopes with a low enrichment fuel element geometrically equal to those of low enrichment. Different alternatives are presented which essentially differ in the core's configuration, fuel management and 'meat' fuel material: U3O8, U3Si or U3Si2 in aluminium matrix. Fluxes at different irradiation positions and power full peak factors are described for each case. The main aspects to be taken into account for cobalt irradiation and the method to be followed to measure the reactor as a function of a required production are presented. (Author) [es

Analysis of core and core barrel heat-up under conditions simulating severe reactor accidents

International Nuclear Information System (INIS)

Chellaiah, S.; Viskanta, R.; Ranganathan, P.; Anand, N.K.

1987-01-01

This paper reports on the development of a model for estimating the temperature distributions in the reactor core, core barrel, thermal shield and reactor pressure vessel of a PWR during an undercooling transient. A number of numerical calculations simulating the core uncovering of the TMI-2 reactor and the subsequent heat-up of the core have been performed. The results of the calculations show that the exothermic heat release due to Zircaloy oxidation contributes to the sharp heat-up of the core. However, the core barrel temperature rise which is driven by the temperature increase of the edge of the core (e.g., the core baffle) is very modest. The maximum temperature of the core barrel never exceeded 610 K (at a system pressure of 68 bar) after a 75 minute simulation following the start of core uncovering

Community Genetics: a new discipline and its application in Brazil

Directory of Open Access Journals (Sweden)

Antonio Sérgio Ramalho

Full Text Available Community genetics is a new discipline which aims to provide genetic services to the community as a whole. As a science, community genetics encompasses all research needed to develop and evaluate its application. There is no question that the development of community genetics is necessary in Brazil. The implementation of such programs in our country, especially for hemoglobinopathies, has been recommended by the World Health Organization and other international organizations. Apart from the need for and appeal of community genetics programs, some aspects require serious review. This article discusses various cultural, social, psychological, and economic factors that can make genetic screening an invasion of individual privacy

Community Genetics: a new discipline and its application in Brazil

Directory of Open Access Journals (Sweden)

Ramalho Antonio Sérgio

2000-01-01

Full Text Available Community genetics is a new discipline which aims to provide genetic services to the community as a whole. As a science, community genetics encompasses all research needed to develop and evaluate its application. There is no question that the development of community genetics is necessary in Brazil. The implementation of such programs in our country, especially for hemoglobinopathies, has been recommended by the World Health Organization and other international organizations. Apart from the need for and appeal of community genetics programs, some aspects require serious review. This article discusses various cultural, social, psychological, and economic factors that can make genetic screening an invasion of individual privacy

Overview of core designs and requirements/criteria for core restraint systems

International Nuclear Information System (INIS)

Sutherland, W.H.

1984-09-01

The requirements and lifetime criteria for the design of a Liquid Metal Fast Breeder Reactor (LMFBR) Core Restraint System are presented. A discussion of the three types of core restraint systems used in LMFBR core design is given. Details of the core restraint system selected for FFTF are presented and the reasons for this selection given. Structural analysis procedures being used to manage the FFTF assembly irradiations are discussed. Efforts that are ongoing to validate the calculational methods and lifetime criteria are presented

S-Net: High-level coordination for the many-core era

NARCIS (Netherlands)

Grelck, C.; Scholz, S.-B.; Shafarenko, A.

2010-01-01

S-Net is a coordination language that aims at reconciling the legacy world of sequential software and programming techniques with the hardware reality in the many-core era. This is achieved through a near-complete separation of conventional application programming from concurrency-related concerns.

Human genetic issues from scientific and Islamic perspectives | Alwi ...

African Journals Online (AJOL)

This paper aims at revealing the Human Genome Project (HGP) and human genetic issues arising from science and Islamic perspectives such as Darwin's evolutionary theory, human cloning and eugenics. Finally, issues arising from the applications of human genetic technology need to be addressed to the best possible ...

Vibration tests on some models of PEC reactor core elements

International Nuclear Information System (INIS)

Bonacina, G.; Castoldi, A.; Zola, M.; Cecchini, F.; Martelli, A.; Vincenzi, D.

1982-01-01

This paper describes the aims of the experimental tests carried out at ISMES, within an agreement with the Department of Fast Reactors of ENEA, on some models of the elements of PEC Fast Nuclear Reactor Core in the frame of the activities for the seismic verification of the PEC core. The seismic verification is briefly described with particular attention to the problems arising from the shocks among the various elements during an earthquake, as well as the computer code used, the purpose and the techniques used to perform tests, some results and the first comparison between the theory and the experimental data

Theoretical Investigation of Inter-core Crosstalk Properties in Homogeneous Trench-Assisted Multi-Core Fibers

DEFF Research Database (Denmark)

Ye, Feihong; Morioka, Toshio; Tu, Jiajing

2014-01-01

We derive analytical expressions for inter-core crosstalk, its dependence on core pitch and wavelength in homogeneous trench-assisted multi-core fibers. They are in excellent agreement with numerical simulation results.......We derive analytical expressions for inter-core crosstalk, its dependence on core pitch and wavelength in homogeneous trench-assisted multi-core fibers. They are in excellent agreement with numerical simulation results....

Optimization method development of the core characteristics of a fast reactor in order to explore possible high performance solutions (a solution being a consistent set of fuel, core, system and safety)

International Nuclear Information System (INIS)

Ingremeau, J.-J.X.

2011-01-01

In the study of any new nuclear reactor, the design of the core is an important step. However designing and optimising a reactor core is quite complex as it involves neutronics, thermal-hydraulics and fuel thermomechanics and usually design of such a system is achieved through an iterative process, involving several different disciplines. In order to solve quickly such a multi-disciplinary system, while observing the appropriate constraints, a new approach has been developed to optimise both the core performance (in-cycle Pu inventory, fuel burn-up, etc...) and the core safety characteristics (safety estimators) of a Fast Neutron Reactor. This new approach, called FARM (Fast Reactor Methodology) uses analytical models and interpolations (Meta-models) from CEA reference codes for neutronics, thermal-hydraulics and fuel behaviour, which are coupled to automatically design a core based on several optimization variables. This global core model is then linked to a genetic algorithm and used to explore and optimise new core designs with improved performance. Consideration has also been given to which parameters can be best used to define the core performance and how safety can be taken into account.This new approach has been used to optimize the design of three concepts of Gas cooled Fast Reactor (GFR). For the first one, using a SiC/SiCf-cladded carbide-fuelled helium-bonded pin, the results demonstrate that the CEA reference core obtained with the traditional iterative method was an optimal core, but among many other possibilities (that is to say on the Pareto front). The optimization also found several other cores which exhibit some improved features at the expense of other safety or performance estimators. An evolution of this concept using a 'buffer', a new technology being developed at CEA, has hence been introduced in FARM. The FARM optimisation produced several core designs using this technology, and estimated their performance. The results obtained show that

A genetic study on attention problems and academic skills: results of a longitudinal study in twins

NARCIS (Netherlands)

Polderman, T.J.C.; Huizink, A.C.; Verhulst, F.C.; van Beijsterveldt, C.E.M.; Boomsma, D.I.; Bartels, M.

2011-01-01

Objective Several studies reported a negative association between ADHD symptoms and academic achievement. We investigated the etiology of the association between Attention Problems (AP, one of the core symptoms in ADHD) in early childhood and four academic skills across childhood in a genetically

Cloud-Based Collaborative Writing and the Common Core Standards

Science.gov (United States)

Yim, Soobin; Warschauer, Mark; Zheng, Binbin; Lawrence, Joshua F.

2014-01-01

The Common Core State Standards emphasize the integration of technology skills into English Language Arts (ELA) instruction, recognizing the demand for technology-based literacy skills to be college- and career- ready. This study aims to examine how collaborative cloud-based writing is used in in a Colorado school district, where one-to-one…

Triadic Closure in Core Networks : Disentangling the Effects of Social Distance, National Origin Similarity and Shared Contexts

NARCIS (Netherlands)

Mollenhorst, Gerald|info:eu-repo/dai/nl/304835153; Van Duijn, Marijtje; Rydgren, Jens; Edling, Christofer

2016-01-01

Acknowledging that the composition and structure of personal networks is affected by meeting opportunities, social distance, and national origin similarity, we aim to disentangle their association with triadic closure in the core of personal networks. We use data (collected 2009) on the core

Triadic closure in core networks: Disentangling the effects of social distance, natoinal origin similarity and shared contexts

NARCIS (Netherlands)

Mollenhorst, Gerald; van Duijn, Maria; Rydgren, Jens; Edling, Christopher

2016-01-01

Acknowledging that the composition and structure of personal networks is affected by meeting opportunities, social distance, and national origin similarity, we aim to disentangle their association with triadic closure in the core of personal networks. We use data (collected 2009) on the core

State space modeling of reactor core in a pressurized water reactor

Energy Technology Data Exchange (ETDEWEB)

Ashaari, A.; Ahmad, T.; M, Wan Munirah W. [Department of Mathematical Science, Faculty of Science, Universiti Teknologi Malaysia, 81310 Skudai, Johor (Malaysia); Shamsuddin, Mustaffa [Institute of Ibnu Sina, Universiti Teknologi Malaysia, 81310 Skudai, Johor (Malaysia); Abdullah, M. Adib [Swinburne University of Technology, Faculty of Engineering, Computing and Science, Jalan Simpang Tiga, 93350 Kuching, Sarawak (Malaysia)

2014-07-10

The power control system of a nuclear reactor is the key system that ensures a safe operation for a nuclear power plant. However, a mathematical model of a nuclear power plant is in the form of nonlinear process and time dependent that give very hard to be described. One of the important components of a Pressurized Water Reactor is the Reactor core. The aim of this study is to analyze the performance of power produced from a reactor core using temperature of the moderator as an input. Mathematical representation of the state space model of the reactor core control system is presented and analyzed in this paper. The data and parameters are taken from a real time VVER-type Pressurized Water Reactor and will be verified using Matlab and Simulink. Based on the simulation conducted, the results show that the temperature of the moderator plays an important role in determining the power of reactor core.

Neutronic design of mixed oxide-silicide cores for the core conversion of rsg-gas reactor

International Nuclear Information System (INIS)

Sembiring, Tagor Malem; Tukiran; Pinem surian; Febrianto

2001-01-01

The core conversion of rsg-gas reactor from an all-oxide (U 3 O 8 -Al) core, through a series of mixed oxide-silicide core, to an all-silicide (U 3 Si 2 -Al) core for the same meat density of 2.96 g U/cc is in progress. The conversion is first step of the step-wise conversion and will be followed by the second step that is the core conversion from low meat density of silicide core, through a series of mixed lower-higher density of silicide core, to an all-higher meat density of 3.55 g/cc core. Therefore, the objectives of this work is to design the mixed cores on the neutronic performance to achieve safety a first full-silicide core for the reactor with the low uranium meat density of 2.96gU/cc. The neutronic design of the mixed cores was performed by means of Batan-EQUIL-2D and Batan-3DIFF computer codes for 2 and 3 dimension diffusion calculation, respectively. The result shows that all mixed oxide-silicide cores will be feasible to achieve safety a fist full-silicide core. The core performs the same neutronic core parameters as those of the equilibrium silicide core. Therefore, the reactor availability and utilization during the core conversion is not changed

Utilization of local area network technology and decentralized structure for nuclear reactor core temperature monitoring

International Nuclear Information System (INIS)

Casella, M.; Peirano, F.

1986-01-01

The present system concerns Superphenix type reactors. It is a new version of system for monitoring the reactor core temperatures. It has been designed to minimize the cost and the wiring complexity because of the large number of channels (800). For this, equipments are arranged on the roof slab of the reactor with a single link to the control room; from which the name Integrated Treatment of Core Temperatures: TITC 1500 and the natural choice of a distributed system. This system monitors permanently the thermal state of the core a Superphenix type reactor. This monitoring system aims at detecting anomalies of core temperature rise, releasing automatic shutdown (safety), and providing to the monitoring systems not concerned safety the information concerning the core [fr

Overview of core designs and requirements/criteria for core restraint systems

International Nuclear Information System (INIS)

Sutherland, W.H.

1984-01-01

The requirements and lifetime criteria for the design of a Liquid Metal Fast Breeder Reactor (LMFBR) Core Restraint System is presented. A discussion of the three types of core restraint systems used in LMFBR core design is given. Details of the core restraint system selected for FFTF are presented and the reasons for this selection given. Structural analysis procedures being used to manage the FFTF assembly irradiations are discussed. Efforts that are ongoing to validate the calculational methods and lifetime criteria are presented. (author)

Nuclear reactor core flow baffling

International Nuclear Information System (INIS)

Berringer, R.T.

1979-01-01

A flow baffling arrangement is disclosed for the core of a nuclear reactor. A plurality of core formers are aligned with the grids of the core fuel assemblies such that the high pressure drop areas in the core are at the same elevations as the high pressure drop areas about the core periphery. The arrangement minimizes core bypass flow, maintains cooling of the structure surrounding the core, and allows the utilization of alternative beneficial components such as neutron reflectors positioned near the core

Quantifying introgression risk with realistic population genetics

OpenAIRE

Ghosh, Atiyo; Meirmans, Patrick G.; Haccou, Patsy

2012-01-01

Introgression is the permanent incorporation of genes from the genome of one population into another. This can have severe consequences, such as extinction of endemic species, or the spread of transgenes. Quantification of the risk of introgression is an important component of genetically modified crop regulation. Most theoretical introgression studies aimed at such quantification disregard one or more of the most important factors concerning introgression: realistic genetical mechanisms, rep...

Mechanical properties of kenaf bast and core fibre reinforced unsaturated polyester composites

Energy Technology Data Exchange (ETDEWEB)

Ishak, M R; Leman, Z; Sapuan, S M [Department of Mechanical and Manufacturing Engineering, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor (Malaysia); Edeerozey, A M M; Othman, I S, E-mail: zleman@eng.upm.edu.my [Faculty of Manufacturing Engineering, Universiti Teknikal Malaysia Melaka, 76109 Durian Tunggal, Melaka (Malaysia)

2010-05-15

Kenaf fibre has high potential to be used for composite reinforcement in biocomposite material. It is made up of an inner woody core and an outer fibrous bark surrounding the core. The aim of this study was to compare the mechanical properties of short kenaf bast and core fibre reinforced unsaturated polyester composites with varying fibre weight fraction i.e. 0%, 5%, 10%, 20%, 30% and 40%. The compression moulding technique was used to prepare the composite specimens for tensile, flexural and impact tests in accordance to the ASTM D5083, ASTM D790 and ASTM D256 respectively. The overall results showed that the composites reinforced with kenaf bast fibre had higher mechanical properties than kenaf core fibre composites. The results also showed that the optimum fibre content for achieving highest tensile strength for both bast and core fibre composites was 20%wt. It was also observed that the elongation at break for both composites decreased as the fibre content increased. For the flexural strength, the optimum fibre content for both composites was 10%wt while for impact strength, it was at 10%wt and 5%wt for bast and core fibre composites respectively.

Mechanical properties of kenaf bast and core fibre reinforced unsaturated polyester composites

International Nuclear Information System (INIS)

Ishak, M R; Leman, Z; Sapuan, S M; Edeerozey, A M M; Othman, I S

2010-01-01

Kenaf fibre has high potential to be used for composite reinforcement in biocomposite material. It is made up of an inner woody core and an outer fibrous bark surrounding the core. The aim of this study was to compare the mechanical properties of short kenaf bast and core fibre reinforced unsaturated polyester composites with varying fibre weight fraction i.e. 0%, 5%, 10%, 20%, 30% and 40%. The compression moulding technique was used to prepare the composite specimens for tensile, flexural and impact tests in accordance to the ASTM D5083, ASTM D790 and ASTM D256 respectively. The overall results showed that the composites reinforced with kenaf bast fibre had higher mechanical properties than kenaf core fibre composites. The results also showed that the optimum fibre content for achieving highest tensile strength for both bast and core fibre composites was 20%wt. It was also observed that the elongation at break for both composites decreased as the fibre content increased. For the flexural strength, the optimum fibre content for both composites was 10%wt while for impact strength, it was at 10%wt and 5%wt for bast and core fibre composites respectively.

GENETIC DIVERSITY OF TYPHA LATIFOLIA (TYPHACEAE) AND THE IMPACT OF POLLUTANTS EXAMINED WITH TANDEM-REPETITIVE DNA PROBES

Science.gov (United States)

Genetic diversity at variable-number-tandem-repeat (VNTR) loci was examined in the common cattail, Typha latifolia (Typhaceae), using three synthetic DNA probes composed of tandemly repeated "core" sequences (GACA, GATA, and GCAC). The principal objectives of this investigation w...

Identifying the core competencies of mental health telephone triage.

Science.gov (United States)

Sands, Natisha; Elsom, Stephen; Gerdtz, Marie; Henderson, Kathryn; Keppich-Arnold, Sandra; Droste, Nicolas; Prematunga, Roshani K; Wereta, Zewdu W

2013-11-01

The primary aim of this study was to identify the core competencies of mental health telephone triage, including key role tasks, skills, knowledge and responsibilities, in which clinicians are required to be competent to perform safe and effective triage. Recent global trends indicate an increased reliance on telephone-based health services to facilitate access to health care across large populations. The trend towards telephone-based health services has also extended to mental health settings, evidenced by the growing number of mental health telephone triage services providing 24-hour access to specialist mental health assessment and treatment. Mental health telephone triage services are critical to the early identification of mental health problems and the provision of timely, appropriate interventions. In spite of the rapid growth in mental health telephone triage and the important role these services play in the assessment and management of mental illness and related risks, there has been very little research investigating this area of practice. An observational design was employed to address the research aims. Structured observations (using dual wireless headphones) were undertaken on 197 occasions of mental health telephone triage over a three-month period from January to March 2011. The research identified seven core areas of mental health telephone triage practice in which clinicians are required to be competent in to perform effective mental health telephone triage, including opening the call; performing mental status examination; risk assessment; planning and action; termination of call; referral and reporting; and documentation. The findings of this research contribute to the evidence base for mental health telephone triage by articulating the core competencies for practice. The mental health telephone triage competencies identified in this research may be used to define an evidence-based framework for mental health telephone triage practice that aims to

Identifying Core Competencies to Advance Female Professors' Careers: An Exploratory Study in United States Academia

Science.gov (United States)

Seo, Ga-eun; Hedayati Mehdiabadi, Amir; Huang, Wenhao

2017-01-01

This exploratory study aims to identify the core competencies necessary to successfully advance the careers of female associate professors in higher education. To ascertain these core career competencies, a critical incident interview technique was employed. One-to-one semi-structured interviews with six female full professors at a major research…

Espaço de cores

Directory of Open Access Journals (Sweden)

Claudia Feitosa-Santana

2006-01-01

Full Text Available O artigo apresenta definições para os termos espaço de cores e sistemas de cores; classifica, de acordo com David Brainard (2003, os sistemas de cores em dois grupos: aparência de cores e diferenças de cores. Dentre os diversos sistemas de cores existentes, o artigo descreve dois deles: o sistema de cores Munsell &– um dos mais utilizados entre os sistemas de aparência de cores &– e a descrição do sistema de cores CIE 1931 &– um dos mais utilizados dentre os sistemas de diferença de cores. Faz-se uma retrospectiva histórica da busca por espaços de cores que representem a percepção de cores humana assim como as diversas reconstruções de espaços de cores por métodos eletrofisiológicos ou psicofísicos. Muitas dessas reconstruções utilizam a escala multidimensional (mds. O artigo também introduz a possibilidade da reconstrução dos espaços de cores de pacientes com discromatopsia adquirida como uma distorção do espaço de indivíduos tricromatas normais.

Availability of 99Tc in undisturbed soil cores

International Nuclear Information System (INIS)

Denys, Sebastien; Echevarria, Guillaume; Florentin, Louis; Leclerc-Cessac, Elisabeth; Morel, Jean-Louis

2003-01-01

Models for safety assessment of radioactive waste repositories need accurate values of the soil-to-plant transfer of radionuclides. In oxidizing environments, 99 Tc is expected to occur as pertechnetate ( 99 TcO 4 - ). Due to its high mobility, leaching of this element in the field might be important, potentially affecting the reliability of estimated transfer parameters of 99 Tc as measured in closed experimental systems such as hydroponics or pot experiments. The aim of this experiment was to measure the leaching of 99 Tc in undisturbed irrigated soil cores under cultivation as well as plant uptake and to study the possible competition between the two transfer pathways. Undisturbed soil cores (50x50 cm) were sampled from a Rendzic Leptosol (R), a colluvial Fluvic Cambisol (F) and a Dystric Cambisol (D) using PVC tubes (three cores sampled per soil type). Each core was equipped with a leachate collector at the bottom, allowing the monitoring of 99 Tc leaching through the cores. Cores were placed in a greenhouse and maize (Zea mays L., cv. DEA, Pioneer[reg]) was sown. After 135 d, maize was harvested and radioactivity determined in both plant and water samples. Results showed that during the growing period, leaching of 99 Tc was limited, due to the high evapotranspiration rate of maize. After harvest, leaching of 99 Tc went on because of the absence of evapotranspiration. Effective uptake (EU) of 99 Tc in leaves and grains was calculated. EU reached 70% of the input in the leaves and was not significantly different among soils. These results confirmed those obtained from pot experiments, even though leaching was allowed to occur in close-to-reality hydraulical conditions. As a consequence, it was concluded that pot experiments are an adequate surrogate for more complex 'close-to-reality' experimental systems for measuring transfer factors

A wireless batteryless in vivo EKG and core body temperature sensing microsystem with 60 Hz suppression technique for untethered genetically engineered mice real-time monitoring.

Science.gov (United States)

Chaimanonart, Nattapon; Young, Darrin J

2009-01-01

A wireless, batteryless, and implantable EKG and core body temperature sensing microsystem with adaptive RF powering for untethered genetically engineered mice real-time monitoring is designed, implemented, and in vivo characterized. A packaged microsystem, exhibiting a total size of 9 mm x 7 mm x 3 mm with a weight of 400 mg including a pair of stainless-steel EKG electrodes, is implanted in a mouse abdomen for real-time monitoring. A low power 2 mm x 2 mm ASIC, consisting of an EKG amplifier, a proportional-to-absolute-temperature (PTAT)-based temperature sensor, an RF power sensing circuit, an RF-DC power converter, an 8-bit ADC, digital control circuitry, and a 433 MHz FSK transmitter, is powered by an adaptively controlled external RF energy source at 4 MHz to ensure a stable 2V supply with 156microA current driving capability for the overall microsystem. An electrical model for analyzing 60 Hz interference based on 2-electrode and 3-electrode configurations is proposed and compared with in vivo evaluation results. Due to the small laboratory animal chest area, a 60 Hz suppression technique by employing input termination resistors is chosen for two-EKG-electrode implant configuration.

Genetic and biochemical characterization of an acquired subgroup B3 metallo-β-lactamase gene, blaAIM-1, and its unique genetic context in Pseudomonas aeruginosa from Australia.

Science.gov (United States)

Yong, Dongeun; Toleman, Mark A; Bell, Jan; Ritchie, Brett; Pratt, Rachael; Ryley, Henry; Walsh, Timothy R

2012-12-01

Three clinical Pseudomonas aeruginosa isolates (WCH2677, WCH2813, and WCH2837) isolated from the Women's and Children's Hospital, Adelaide, Australia, produced a metallo-β-lactamase (MBL)-positive Etest result. All isolates were PCR negative for known MBL genes. A gene bank was created, and an MBL gene, designated bla(AIM-1), was cloned and fully characterized. The encoded enzyme, AIM-1, is a group B3 MBL that has the highest level of identity to THIN-B and L1. It is chromosomal and flanked by two copies (one intact and one truncated) of an ISCR element, ISCR15. Southern hybridization studies indicated the movement of both ISCR15 and bla(AIM-1) within the three different clinical isolates. AIM-1 hydrolyzes most β-lactams, with the exception of aztreonam and, to a lesser extent, ceftazidime; however, it possesses significantly higher k(cat) values for cefepime and carbapenems than most other MBLs. AIM-1 was the first mobile group B3 enzyme detected and signals further problems for already beleaguered antimicrobial regimes to treat serious P. aeruginosa and other Gram-negative infections.

Core antigen and circulating anti-core antibody in hepatitis B infection

Energy Technology Data Exchange (ETDEWEB)

Howard, C R; Zuckerman, A J [London School of Hygiene and Tropical Medicine (UK)

1977-02-01

Core antigen was obtained from the sera of persistent chronic carriers of hepatitis B virus by centrifugation and treatment with Nonidet P40 and 2-mercaptoethanol. The separated core antigen was radiolabelled and identified as a nucleoprotein structure of buoyant density 1.36 g/cm/sup 3/ and possessing an isoelectric point of 4.4. This material was employed in a radioimmnoassay procedure of high sensitivity for the detection of core antibody. In a series of sera from patients with acute type B hepatitis, core antibody was demonstrated 2 to 3 weeks after the onset of jaundice during the period of surface antigenaemia. The presence of core antibody may therefore provide an accurate serological marker for the detection of active or recent virus replication in future epidemiological studies of hepatitis B infection.

Internal core tightener

International Nuclear Information System (INIS)

Brynsvold, G.V.; Snyder, H.J. Jr.

1976-01-01

An internal core tightener is disclosed which is a linear actuated (vertical actuation motion) expanding device utilizing a minimum of moving parts to perform the lateral tightening function. The key features are: (1) large contact areas to transmit loads during reactor operation; (2) actuation cam surfaces loaded only during clamping and unclamping operation; (3) separation of the parts and internal operation involved in the holding function from those involved in the actuation function; and (4) preloaded pads with compliant travel at each face of the hexagonal assembly at the two clamping planes to accommodate thermal expansion and irradiation induced swelling. The latter feature enables use of a ''fixed'' outer core boundary, and thus eliminates the uncertainty in gross core dimensions, and potential for rapid core reactivity changes as a result of core dimensional change. 5 claims, 12 drawing figures

Characterization of Factors affecting IASCC of PWR Core Internals

Energy Technology Data Exchange (ETDEWEB)

Kim, Sung Woo; Hwang, Seong Sik; Kim, Won Sam [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

2008-09-15

A lot works have been performed on IASCC in BWR. Recent efforts have been devoted to investigate IASCC in PWR, but the mechanism in PWR is not fully understood yet as compared with that in BWR due to a lack of data from laboratories and fields. Therefore it is strongly needed to review and analyse recent researches of IASCC in both BWR and PWR for establishing a proactive management technology for IASCC of core internals in Korean PWRs. This work is aimed to review mainly recent technical reports on IASCC of stainless steels for core internals in PWR. For comparison, the works on IASCC in BWR were also reviewed and briefly introduced in this report.

Application Service Providers (ASP Adoption in Core and Non-Core Functions

Directory of Open Access Journals (Sweden)

Aman Y.M. Chan

2009-10-01

Full Text Available With the further improvement in internet bandwidth, connection stability and data transmission security, a new wave of Application Service Providers (ASP is on his way. The recent booming on some models such as Software Application as Service (SaaS and On-Demand in 2008, has led to emergence of ASP model in core business functions. The traditional IS outsourcing covers the non-core business functions that are not critical to business performance and competitive advantages. Comparing with traditional IS outsourcing, ASP is a new phenomenon that can be considered as an emerging innovation as it covers both core and non-core business functions. Most of the executives do not comprehend the difference and similarity between traditional IS outsourcing and ASP mode. Hence, we propose to conduct a research so as to identify the determinants (cost benefit, gap in IS capability complementing the company's strategic goal, and trust to ASP's service and security level and moderating factors (management's attitude in ownership & control, and company aggressiveness of ASP adoption decision in both core and non-core business functions.

Core Self-Evaluation and Burnout among Nurses: The Mediating Role of Coping Styles

OpenAIRE

Li, Xiaofei; Guan, Lili; Chang, Hui; Zhang, Bo

2014-01-01

OBJECTIVES: This study aimed to determine the potential association between core self-evaluation and the burnout syndrome among Chinese nurses, and the mediating role of coping styles in this relationship. METHODS: A cross-sectional survey was conducted in Shenyang, China, from May to July, 2013. A questionnaire which consisted of the Maslach Burnout Inventory-General Survey (MBI-GS), the Core Self-Evaluation Scale (CSE), and the Simplified Coping Style Questionnaire (CSQ), was completed by a...

Reactor core

International Nuclear Information System (INIS)

Azekura, Kazuo; Kurihara, Kunitoshi.

1992-01-01

In a BWR type reactor, a great number of pipes (spectral shift pipes) are disposed in the reactor core. Moderators having a small moderating cross section (heavy water) are circulated in the spectral shift pipes to suppress the excess reactivity while increasing the conversion ratio at an initial stage of the operation cycle. After the intermediate stage of the operation cycle in which the reactor core reactivity is lowered, reactivity is increased by circulating moderators having a great moderating cross section (light water) to extend the taken up burnup degree. Further, neutron absorbers such as boron are mixed to the moderator in the spectral shift pipe to control the concentration thereof. With such a constitution, control rods and driving mechanisms are no more necessary, to simplify the structure of the reactor core. This can increase the fuel conversion ratio and control great excess reactivity. Accordingly, a nuclear reactor core of high conversion and high burnup degree can be attained. (I.N.)

Genetic Diversity of Tick-Borne Rickettsial Pathogens; Insights Gained from Distant Strains

Directory of Open Access Journals (Sweden)

Sebastián Aguilar Pierlé

2014-01-01

Full Text Available The ability to capture genetic variation with unprecedented resolution improves our understanding of bacterial populations and their ability to cause disease. The goal of the pathogenomics era is to define genetic diversity that results in disease. Despite the economic losses caused by vector-borne bacteria in the Order Rickettsiales, little is known about the genetic variants responsible for observed phenotypes. The tick-transmitted rickettsial pathogen Anaplasma marginale infects cattle in tropical and subtropical regions worldwide, including Australia. Genomic analysis of North American A. marginale strains reveals a closed core genome defined by high levels of Single Nucleotide Polymorphisms (SNPs. Here we report the first genome sequences and comparative analysis for Australian strains that differ in virulence and transmissibility. A list of genetic differences that segregate with phenotype was evaluated for the ability to distinguish the attenuated strain from virulent field strains. Phylogenetic analyses of the Australian strains revealed a marked evolutionary distance from all previously sequenced strains. SNP analysis showed a strikingly reduced genetic diversity between these strains, with the smallest number of SNPs detected between any two A. marginale strains. The low diversity between these phenotypically distinct bacteria presents a unique opportunity to identify the genetic determinants of virulence and transmission.

'Omics' approaches in tomato aimed at identifying candidate genes ...

African Journals Online (AJOL)

Tomato (Solanum lycopersicum) is one of the most important vegetables in the world with significant importance for human health and nutrition. This species has long served as model system for plant genetics, development, physiology, pathology, and fleshy fruit ripening, resulting in the accumulation of many genetic and ...

Electromagnetically driven westward drift and inner-core superrotation in Earth’s core

Science.gov (United States)

Livermore, Philip W.; Hollerbach, Rainer; Jackson, Andrew

2013-01-01

A 3D numerical model of the earth’s core with a viscosity two orders of magnitude lower than the state of the art suggests a link between the observed westward drift of the magnetic field and superrotation of the inner core. In our model, the axial electromagnetic torque has a dominant influence only at the surface and in the deepest reaches of the core, where it respectively drives a broad westward flow rising to an axisymmetric equatorial jet and imparts an eastward-directed torque on the solid inner core. Subtle changes in the structure of the internal magnetic field may alter not just the magnitude but the direction of these torques. This not only suggests that the quasi-oscillatory nature of inner-core superrotation [Tkalčić H, Young M, Bodin T, Ngo S, Sambridge M (2013) The shuffling rotation of the earth’s inner core revealed by earthquake doublets. Nat Geosci 6:497–502.] may be driven by decadal changes in the magnetic field, but further that historical periods in which the field exhibited eastward drift were contemporaneous with a westward inner-core rotation. The model further indicates a strong internal shear layer on the tangent cylinder that may be a source of torsional waves inside the core. PMID:24043841

Prevalence and detection of psychosocial problems in cancer genetic counseling

NARCIS (Netherlands)

Eijzenga, W.; Bleiker, E.M.A.; Hahn, D.E.E.; van der Kolk, L.E.; Sidharta, G.N.; Aaronson, N.K.

2015-01-01

Only a minority of individuals who undergo cancer genetic counseling experience heightened levels of psychological distress, but many more experience a range of cancer genetic-specific psychosocial problems. The aim of this study was to estimate the prevalence of such psychosocial problems, and to

Global Characterization of Genetic Variation by Using High-Throughput Technologies

DEFF Research Database (Denmark)

Zhan, Bujie

. This projekt aimed to characterize large scale of genetic vaiations in complex genomes by applying hig-throughput technologies and bioinformatic approache4s, to help investigate genetic foundation of disease susceptibility and product traits in livestock species. This PhD project provide a comprehensive sight...

YOUNG STARLESS CORES EMBEDDED IN THE MAGNETICALLY DOMINATED PIPE NEBULA

International Nuclear Information System (INIS)

Frau, P.; Girart, J. M.; Alves, F. O.; Beltran, M. T.; Morata, O.; Masque, J. M.; Busquet, G.; Sanchez-Monge, A.; Estalella, R.; Franco, G. A. P.

2010-01-01

The Pipe Nebula is a massive, nearby dark molecular cloud with a low star formation efficiency which makes it a good laboratory in which to study the very early stages of the star formation process. The Pipe Nebula is largely filamentary and appears to be threaded by a uniform magnetic field at scales of a few parsecs, perpendicular to its main axis. The field is only locally perturbed in a few regions, such as the only active cluster-forming core B59. The aim of this study is to investigate primordial conditions in low-mass pre-stellar cores and how they relate to the local magnetic field in the cloud. We used the IRAM 30 m telescope to carry out a continuum and molecular survey at 3 and 1 mm of early- and late-time molecules toward four selected starless cores inside the Pipe Nebula. We found that the dust continuum emission maps trace the densest regions better than previous Two Micron All Sky Survey (2MASS) extinction maps, while 2MASS extinction maps trace the diffuse gas better. The properties of the cores derived from dust emission show average radii of ∼0.09 pc, densities of ∼1.3x10 5 cm -3 , and core masses of ∼2.5 M sun . Our results confirm that the Pipe Nebula starless cores studied are in a very early evolutionary stage and present a very young chemistry with different properties that allow us to propose an evolutionary sequence. All of the cores present early-time molecular emission with CS detections in the whole sample. Two of them, cores 40 and 109, present strong late-time molecular emission. There seems to be a correlation between the chemical evolutionary stage of the cores and the local magnetic properties that suggests that the evolution of the cores is ruled by a local competition between the magnetic energy and other mechanisms, such as turbulence.

Intrinsically secure fast reactors with dense cores

International Nuclear Information System (INIS)

Slessarev, Igor

2007-01-01

Secure safety, resistance to weapons material proliferation and problems of long-lived wastes remain the most important 'painful points' of nuclear power. Many innovative reactor concepts have been developed aimed at a radical enhancement of safety. The promising potential of innovative nuclear reactors allows for shifting accents in current reactor safety 'strategy' to reveal this worth. Such strategy is elaborated focusing on the priority for intrinsically secure safety features as well as on sure protection being provided by the first barrier of defence. Concerning the potential of fast reactors (i.e. sodium cooled, lead-cooled, etc.), there are no doubts that they are able to possess many favourable intrinsically secure safety features and to lay the proper foundation for a new reactor generation. However, some of their neutronic characteristics have to be radically improved. Among intrinsically secure safety properties, the following core parameters are significantly important: reactivity margin values, reactivity feed-back and coolant void effects. Ways of designing intrinsically secure safety features in fast reactors (titled hereafter as Intrinsically Secure Fast Reactors - ISFR) can be found in the frame of current reactor technologies by radical enhancement of core neutron economy and by optimization of core compositions. Simultaneously, respecting resistance to proliferation, by using non-enriched fuel feed as well as a core breeding gain close to zero, are considered as the important features (long-lived waste problems will be considered in a separate paper). This implies using the following reactor design options as well as closed fuel cycles with natural U as the reactor feed: ·Ultra-plate 'dense cores' of the ordinary (monolithic) type with negative total coolant void effects. ·Modular type cores. Multiple dense modules can be embedded in the common reflector for achieving the desired NPP total power. The modules can be used also independently (as

Genetic parameters, phenotypic, genotypic and environmental correlations and genetic variability on sunflower in the Brazilian Savannah

Directory of Open Access Journals (Sweden)

Ellen Grippi Lira

Full Text Available ABSTRACT: Sunflower (Helianthus annuus L. is an annual crop that stands out for its production of high quality oil and for an efficient selection, being necessary to estimate the components of genetic and phenotypic variance. This study aimed to estimate genetic parameters, phenotypic, genotypic and environmental correlations and genetic variability on sunflower in the Brazilian Savannah, evaluating the characters grain yield (YIELD, days to start flowering (DFL based on flowering date in R5, chapter length (CL, weight of a thousand achenes (WTA, plant height (H and oil content (OilC of 16 sunflower genotypes. The experiment was conducted at Embrapa Cerrados, Planaltina, DF, situated at 15º 35’ 30”S latitude, 47º 42’ 30”W longitude and 1.007m above sea level, in soil classified as dystroferric Oxisol. The experimental design used was a complete randomized block with four replicates. The nature for the effects of genotypes and blocks was fixed. Except for the character chapter length, genetic variance was the main component of the phenotypic variance among the genotypes, indicating high genetic variability and experimental efficiency with proper environmental control. In absolute terms, the genetic correlations were superior to phenotypic and environmental. The high values reported for heritability and selective accuracy indicated efficiency of phenotypic selection. Results showed high genetic variability among genotypes, which may contribute to the genetic improvement of sunflower.

Comparison of Magnetic Characteristics of Powder Magnetic Core and Evaluation of Motor Characteristics

Science.gov (United States)

Enomoto, Yuji; Ito, Motoya; Masaki, Ryozo; Yamazaki, Katsuyuki; Asaka, Kazuo; Ishihara, Chio; Ohiwa, Syoji

A magnetic characteristic measurement, a motor characteristic forecast, and an experimental evaluation of various powder magnetic cores were performed aiming at a fixed quantity grasp when the powder magnetic core was applied to the motor core as the magnetic material. The manufacturing conditions were changed, and magnetic characteristic compares a direct current magnetization characteristic and an iron disadvantageous characteristic with the silicon steel board for a different powder magnetic core. Therefore, though some permeabilities are low, characteristics almost equal to those of a silicon steel board were obtained in the maximum saturation magnetic induction, which confirms that the powder magnetic core in disadvantageous iron in a certain frequency domain, and to confirm disadvantageous iron lowers. Moreover, it has been shown to obtain characteristics almost equal to the silicon steel board when compared in terms of motor efficiency, though some disadvantageous iron increases since the effect when applying to the motor is verified the silicon steel board and the comparison evaluation for the surface type permanent magnet motor.

Neutronic design of the XT-ADS core

International Nuclear Information System (INIS)

Van den Eynde, G.

2007-01-01

The EUROTRANS project is an integrated project in the 6th European Framework Program in the context of Partitioning and Transmutation. The objective of this project is the step-wise approach to a European Transmutation Demonstration. This project aims to deliver an advanced design of a small-scale Accelerator Driven System (ADS), XT-ADS, as well as the conceptual design of a European Facility for Industrial Transmutation (EFIT). The partners of this project accepted to use the MYRRHA Draft-2 design file as a starting basis for the design of the short-term XT-ADS demonstration machine. Instead of starting from a blank page, this allowed optimising an existing design towards the needs of XT-ADS, and this within the accepted limits of the safety requirements. Many options have been revisited and the framework is now set up. The main two objectives of the XT-ADS machine are the following: to demonstrate the feasibility of the ADS concept and to perform as a multi-purpose irradiation facility. Special attention is paid to the possibility of testing fuel dedicated to transmutation of minor actinides and long-life fission products. During the demonstration phase, the core will be loaded with MOX fuel in a clean core configuration. Since the XT-ADS must be a representative prototype, it has to operate at a reasonable power, a minimum of 50 MWth was set in the objectives. After this phase, the core will house In-Pile-Sections of different types for irradiating material samples, new types of fuel pins. We aim to be able to provide irradiation conditions that are close to EFIT conditions so XT-ADS can be used as a test-bed for EFIT parts

Preparation and characterization of morph-genetic aluminum nitride/carbon composites from filter paper

International Nuclear Information System (INIS)

Wang Wei; Xue Tao; Jin Zhihao; Qiao Guanjun

2008-01-01

Morph-genetic aluminum nitride/carbon composites with cablelike structure were prepared from filter paper template through the surface sol-gel process and carbothermal nitridation reaction. The resulting materials have a hierarchical structure originating from the morphology of cellulose paper. The aluminum nitride/carbon composites have the core-shell microstructure, the core is graphitic carbon, and the shell is aluminum nitride nanocoating formed by carbothermal nitridation reduction of alumina with the interfacial carbon in nitrogen atmosphere. Scanning electron microscopy, energy dispersive X-ray spectroscopy, X-ray diffraction, and transmission electron microscope were employed to characterize the structural morphology and phase compositions of the final products

Genetic variability in Jatropha curcas L. from diallel crossing.

Science.gov (United States)

Ribeiro, D O; Silva-Mann, R; Alvares-Carvalho, S V; Souza, E M S; Vasconcelos, M C; Blank, A F

2017-05-18

Physic nut (Jatropha curcas L.) presents high oilseed yield and low production cost. However, technical-scientific knowledge on this crop is still limited. This study aimed to evaluate and estimate the genetic variability of hybrids obtained from dialell crossing. Genetic variability was carried out using ISSR molecular markers. For genetic variability, nine primers were used, and six were selected with 80.7% polymorphism. Genetic similarity was obtained using the NTSYS pc. 2.1 software, and cluster analysis was obtained by the UPGMA method. Mean genetic similarity was 58.4% among hybrids; the most divergent pair was H1 and H10 and the most similar pair was H9 and H10. ISSR PCR markers provided a quick and highly informative system for DNA fingerprinting, and also allowed establishing genetic relationships of Jatropha hybrids.

Genetic testing in inherited polyposis syndromes - how and why?

Science.gov (United States)

Lee, G H; Payne, S J; Melville, A; Clark, S K

2014-08-01

There have been recent advances in genetic testing enabling accurate diagnosis of polyposis syndromes by identifying causative gene mutations, which is essential in the management of individuals with polyposis syndrome and predictive genetic testing of their extended families. There are some similarities in clinical presentation of various polyposis syndromes, which may pose a challenge to diagnosis. In this review, we discuss the clinical presentation of the main polyposis syndromes and the process of genetic testing, including the latest advancement and future of genetic testing. We aim to reiterate the importance of genetic testing in the management of polyposis syndromes, potential pitfalls associated with genetic testing and recommendations for healthcare professionals involved with the care of polyposis patients. Colorectal Disease © 2014 The Association of Coloproctology of Great Britain and Ireland.

Inner Core Rotation from Geomagnetic Westward Drift and a Stationary Spherical Vortex in Earth's Core

Science.gov (United States)

Voorhies, C. V.

1999-01-01

The idea that geomagnetic westward drift indicates convective leveling of the planetary momentum gradient within Earth's core is pursued in search of a differentially rotating mean state, upon which various oscillations and secular effects might be superimposed. The desired state conforms to roughly spherical boundary conditions, minimizes dissipative interference with convective cooling in the bulk of the core, yet may aide core cooling by depositing heat in the uppermost core and lower mantle. The variational calculus of stationary dissipation applied to a spherical vortex within the core yields an interesting differential rotation profile akin to spherical Couette flow bounded by thin Hartmann layers. Four boundary conditions are required. To concentrate shear induced dissipation near the core-mantle boundary, these are taken to be: (i) no-slip at the core-mantle interface; (ii) geomagnetically estimated bulk westward flow at the base of the core-mantle boundary layer; (iii) no-slip at the inner-outer core interface; and, to describe magnetic locking of the inner core to the deep outer core, (iv) hydrodynamically stress-free at the inner-outer core boundary. By boldly assuming the axial core angular momentum anomaly to be zero, the super-rotation of the inner core is calculated to be at most 1.5 degrees per year.

The impact of genetic heterogeneity on biomarker development in kidney cancer assessed by multiregional sampling

International Nuclear Information System (INIS)

Sankin, Alexander; Hakimi, Abraham A; Mikkilineni, Nina; Ostrovnaya, Irina; Silk, Mikhail T; Liang, Yupu; Mano, Roy; Chevinsky, Michael; Motzer, Robert J; Solomon, Stephen B; Cheng, Emily H; Durack, Jeremy C; Coleman, Jonathan A; Russo, Paul; Hsieh, James J

2014-01-01

Primary clear cell renal cell carcinoma (ccRCC) genetic heterogeneity may lead to an underestimation of the mutational burden detected from a single site evaluation. We sought to characterize the extent of clonal branching involving key tumor suppressor mutations in primary ccRCC and determine if genetic heterogeneity could limit the mutation profiling from a single region assessment. Ex vivo core needle biopsies were obtained from three to five different regions of resected renal tumors at a single institution from 2012 to 2013. DNA was extracted and targeted sequencing was performed on five genes associated with ccRCC (von-Hippel Lindau [VHL], PBRM1, SETD2, BAP1, and KDM5C). We constructed phylogenetic trees by inferring clonal evolution based on the mutations present within each core and estimated the predictive power of detecting a mutation for each successive tumor region sampled. We obtained 47 ex vivo biopsy cores from 14 primary ccRCC's (median tumor size 4.5 cm, IQR 4.0–5.9 cm). Branching patterns of various complexities were observed in tumors with three or more mutations. A VHL mutation was detected in nine tumors (64%), each time being present ubiquitously throughout the tumor. Other genes had various degrees of regional mutational variation. Based on the mutations' prevalence we estimated that three different tumor regions should be sampled to detect mutations in PBRM1, SETD2, BAP1, and/or KDM5C with 90% certainty. The mutational burden of renal tumors varies by region sampled. Single site assessment of key tumor suppressor mutations in primary ccRCC may not adequately capture the genetic predictors of tumor behavior

A Genetic Algorithm Based Optimization Scheme To Find The Best Set Of Design Parameters To Enhance The Performance Of An Automobile Radiator

Directory of Open Access Journals (Sweden)

G.Chaitanya

2013-12-01

Full Text Available The present work aims at maximizing the overall heat transfer rate of an automobile radiator using Genetic Algorithm approach. The design specifications and empirical data pertaining to a rally car radiator obtained from literature are considered in the present work. The mathematical function describing the objective for the problem is formulated using the radiator core design equations and heat transfer relations governing the radiator. The overall heat transfer rate obtained from the present optimization technique is found to be 9.48 percent higher compared to the empirical value present in the literature. Also, the enhancement in the overall heat transfer rate is achieved with a marginal reduction in the radiator dimensions indicating better spacing ratio compared to the existing design.

EVALUATION OF THE HTA CORE MODEL FOR NATIONAL HEALTH TECHNOLOGY ASSESSMENT REPORTS: COMPARATIVE STUDY AND EXPERIENCES FROM EUROPEAN COUNTRIES.

Science.gov (United States)

Kõrge, Kristina; Berndt, Nadine; Hohmann, Juergen; Romano, Florence; Hiligsmann, Mickael

2017-01-01

The health technology assessment (HTA) Core Model® is a tool for defining and standardizing the elements of HTA analyses within several domains for producing structured reports. This study explored the parallels between the Core Model and a national HTA report. Experiences from various European HTA agencies were also investigated to determine the Core Model's adaptability to national reports. A comparison between a national report on Genetic Counseling, produced by the Cellule d'expertise médicale Luxembourg, and the Core Model was performed to identify parallels in terms of relevant and comparable assessment elements (AEs). Semi-structured interviews with five representatives from European HTA agencies were performed to assess their user experiences with the Core Model. The comparative study revealed that 50 percent of the total number (n = 144) of AEs in the Core Model were relevant for the national report. Of these 144 AEs from the Core Model, 34 (24 percent) were covered in the national report. Some AEs were covered only partly. The interviewees emphasized flexibility in using the Core Model and stated that the most important aspects to be evaluated include characteristics of the disease and technology, clinical effectiveness, economic aspects, and safety. In the present study, the national report covered an acceptable number of AEs of the Core Model. These results need to be interpreted with caution because only one comparison was performed. The Core Model can be used in a flexible manner, applying only those elements that are relevant from the perspective of the technology assessment and specific country context.

Genetic variability and cadmium metabolism and toxicity

OpenAIRE

Rentschler, Gerda

2014-01-01

Abstract: Cadmium (Cd) is ubiquitous in the environment. Human exposure in non-smokers occurs mainly via intake of healthy food like vegetables, cereals, and shellfish. Adverse health effects on kidney and bone at low-level environmental Cd exposure are well-documented in adults. There is considerable inter-individual variation in both metabolism (toxicokinetics) and toxicity (toxicodynamics) of Cd. This may be due to genetic factors. The aim of this thesis was to identify genetic fact...

The gravitational attraction algorithm: a new metaheuristic applied to a nuclear reactor core design optimization problem

International Nuclear Information System (INIS)

Sacco, Wagner F.; Oliveira, Cassiano R.E. de

2005-01-01

A new metaheuristic called 'Gravitational Attraction Algorithm' (GAA) is introduced in this article. It is an analogy with the gravitational force field, where a body attracts another proportionally to both masses and inversely to their distances. The GAA is a populational algorithm where, first of all, the solutions are clustered using the Fuzzy Clustering Means (FCM) algorithm. Following that, the gravitational forces of the individuals in relation to each cluster are evaluated and this individual or solution is displaced to the cluster with the greatest attractive force. Once it is inside this cluster, the solution receives small stochastic variations, performing a local exploration. Then the solutions are crossed over and the process starts all over again. The parameters required by the GAA are the 'diversity factor', which is used to create a random diversity in a fashion similar to genetic algorithm's mutation, and the number of clusters for the FCM. GAA is applied to the reactor core design optimization problem which consists in adjusting several reactor cell parameters in order to minimize the average peak-factor in a 3-enrichment-zone reactor, considering operational restrictions. This problem was previously attacked using the canonical genetic algorithm (GA) and a Niching Genetic Algorithm (NGA). The new metaheuristic is then compared to those two algorithms. The three algorithms are submitted to the same computational effort and GAA reaches the best results, showing its potential for other applications in the nuclear engineering field as, for instance, the nuclear core reload optimization problem. (author)

Genetic divergence of tomato subsamples

Directory of Open Access Journals (Sweden)

André Pugnal Mattedi

2014-02-01

Full Text Available Understanding the genetic variability of a species is crucial for the progress of a genetic breeding program and requires characterization and evaluation of germplasm. This study aimed to characterize and evaluate 101 tomato subsamples of the Salad group (fresh market and two commercial controls, one of the Salad group (cv. Fanny and another of the Santa Cruz group (cv. Santa Clara. Four experiments were conducted in a randomized block design with three replications and five plants per plot. The joint analysis of variance was performed and characteristics with significant complex interaction between control and experiment were excluded. Subsequently, the multicollinearity diagnostic test was carried out and characteristics that contributed to severe multicollinearity were excluded. The relative importance of each characteristics for genetic divergence was calculated by the Singh's method (Singh, 1981, and the less important ones were excluded according to Garcia (1998. Results showed large genetic divergence among the subsamples for morphological, agronomic and organoleptic characteristics, indicating potential for genetic improvement. The characteristics total soluble solids, mean number of good fruits per plant, endocarp thickness, mean mass of marketable fruit per plant, total acidity, mean number of unmarketable fruit per plant, internode diameter, internode length, main stem thickness and leaf width contributed little to the genetic divergence between the subsamples and may be excluded in future studies.

Quantitative Analyses of Core Promoters Enable Precise Engineering of Regulated Gene Expression in Mammalian Cells

Science.gov (United States)

Ede, Christopher; Chen, Ximin; Lin, Meng-Yin; Chen, Yvonne Y.

2016-01-01

Inducible transcription systems play a crucial role in a wide array of synthetic biology circuits. However, the majority of inducible promoters are constructed from a limited set of tried-and-true promoter parts, which are susceptible to common shortcomings such as high basal expression levels (i.e., leakiness). To expand the toolbox for regulated mammalian gene expression and facilitate the construction of mammalian genetic circuits with precise functionality, we quantitatively characterized a panel of eight core promoters, including sequences with mammalian, viral, and synthetic origins. We demonstrate that this selection of core promoters can provide a wide range of basal gene expression levels and achieve a gradient of fold-inductions spanning two orders of magnitude. Furthermore, commonly used parts such as minimal CMV and minimal SV40 promoters were shown to achieve robust gene expression upon induction, but also suffer from high levels of leakiness. In contrast, a synthetic promoter, YB_TATA, was shown to combine low basal expression with high transcription rate in the induced state to achieve significantly higher fold-induction ratios compared to all other promoters tested. These behaviors remain consistent when the promoters are coupled to different genetic outputs and different response elements, as well as across different host-cell types and DNA copy numbers. We apply this quantitative understanding of core promoter properties to the successful engineering of human T cells that respond to antigen stimulation via chimeric antigen receptor signaling specifically under hypoxic environments. Results presented in this study can facilitate the design and calibration of future mammalian synthetic biology systems capable of precisely programmed functionality. PMID:26883397

Epistemology and ontology in core ontologies: FOLaw and LRI-Core, two core ontologies for law

NARCIS (Netherlands)

Breukers, J.A.P.J.; Hoekstra, R.J.

2004-01-01

For more than a decade constructing ontologies for legal domains, we, at the Leibniz Center for Law, felt really the need to develop a core ontology for law that would enable us to re-use the common denominator of the various legal domains. In this paper we present two core ontologies for law. The

Societal aspects of genetically modified foods

DEFF Research Database (Denmark)

Frewer, L.J.; Lassen, J.; Kettlitz, B.

2004-01-01

This paper aims to examine some of the reasons behind public controversy associated with the introduction of genetically modified foods in Europe the 1990s. The historical background to the controversy is provided to give context. The issue of public acceptance of genetically modified foods......, and indeed the emerging biosciences more generally, is considered in the context of risk perceptions and attitudes, public trust in regulatory institutions, scientists and industry, and the need to develop communication strategies that explicitly include public concerns rather than exclude them. Increased...

A fixed incore based system for an on line core margin monitoring

International Nuclear Information System (INIS)

Mourlevat, J. L.; Carrasco, M.

2002-01-01

In order to comply with the needs of Utilities for improvements in the economic competitiveness of nuclear energy, one of the solutions proposed is to reduce the cost of the fuel cycle. To this aim, increasing the lifetime of cycles by introducing so-called low leakage fuel loading patterns to the reactor is a rather promising solution. However, these loading patterns lead to an increase in the core hostspot factors and therefore to a reduction in the core operating margins. For many years FRAMATOME-ANP has developed and proposed solutions aiming at increasing and therefore restoring these margins, namely; the improvement in design methods based on three-dimensional modelling of the core,on kinetic representation of transients and on neutron-thermohydraulic coupling, or the improvement in the fuel with the introduction of intermediate mixing girds. A third approach is to improve the core instrumentation associated with the system for monitoring the core operating limits: it is this approach that is described in this presentation. The core operating limits monitoring function calls on realtime knowledge of the power distribution. At present time, for most of the PWRs operated in the world, this knowledge is based on the measurement of the axial power distribution made by two-section neutron detectors located outside the pressure vessel. This kind of detectors is only able to provide the operators with a rustic picture of the axial power distribution through the axial dissymmetry index so called axial-offset. During normal core operation operators have to control the axial power distribution that means to keep the axial-offset value inside a pre-determined domain of which the width is a function of the mean power level. This pre-determined domain is calculated or checked during the nuclear design phase of the reload and due to th emethodology used to calculate it, a consderable potential for improving the core operating margin does ewxist. This the reason why

Gordon Research Conference on Genetic Toxicology

Energy Technology Data Exchange (ETDEWEB)

Project Director Penelope Jeggo

2003-02-15

conferences, the emphasis has moved to understanding how cells and organisms respond to the different forms of genotoxic damage incurred. By understanding these mechanisms, the risk to humans can be more rationally assessed and evaluated. More recently, the format of the meetings have aimed to facilitate input from the range of disciplines that can now provide insight into the field. This evolution in emphasis has been continued in the format of the proposed 2003 meeting. In the last Genetic Toxicology Gordon Conference (2001), the aim was to integrate studies on genetic toxicology at the structural, molecular and cellular level with those involving mice and humans (2 micron to Man). In the 2003 conference, we aim to integrate the approaches from 2 micron to man together with approaches where our basic knowledge has been exploited in an applied context (2 micron to Man to manipulation).

Towards an ICF Core Set for chronic musculoskeletal conditions: commonalities across ICF Core Sets for osteoarthritis, rheumatoid arthritis, osteoporosis, low back pain and chronic widespread pain.

Science.gov (United States)

Schwarzkopf, S R; Ewert, T; Dreinhöfer, K E; Cieza, A; Stucki, G

2008-11-01

The objective of the study was to identify commonalities among the International Classification of Functioning, Disability and Health (ICF) Core Sets of osteoarthritis (OA), osteoporosis (OP), low back pain (LBP), rheumatoid arthritis (RA) and chronic widespread pain (CWP). The aim is to identify relevant categories for the development of a tentative ICF Core Set for musculoskeletal and pain conditions. The ICF categories common to the five musculoskeletal and pain conditions in the Brief and Comprehensive ICF Core Sets were identified in three steps. In a first step, the commonalities across the Brief and Comprehensive ICF Core Sets for these conditions were examined. In a second and third step, we analysed the increase in commonalities when iteratively excluding one or two of the five conditions. In the first step, 29 common categories out of the total number of 120 categories were identified across the Comprehensive ICF Core Sets of all musculoskeletal and pain conditions, primarily in the component activities and participation. In the second and third step, we found that the exclusion of CWP across the Comprehensive ICF Core Sets increased the commonalities of the remaining four musculoskeletal conditions in a maximum of ten additional categories. The Brief ICF Core Sets of all musculoskeletal and pain conditions contain four common categories out of a total number of 62 categories. The iterative exclusion of a singular condition did not significantly increase the commonalities in the remaining. Based on our analysis, it seems possible to develop a tentative Comprehensive ICF Core Set across a number of musculoskeletal conditions including LBP, OA, OP and RA. However, the profile of functioning in people with CWP differs considerably and should not be further considered for a common ICF Core Set.

Role of Genomic Typing in Taxonomy, Evolutionary Genetics, and Microbial Epidemiology

OpenAIRE

van Belkum, Alex; Struelens, Marc; de Visser, Arjan; Verbrugh, Henri; Tibayrenc, Michel

2001-01-01

Currently, genetic typing of microorganisms is widely used in several major fields of microbiological research. Taxonomy, research aimed at elucidation of evolutionary dynamics or phylogenetic relationships, population genetics of microorganisms, and microbial epidemiology all rely on genetic typing data for discrimination between genotypes. Apart from being an essential component of these fundamental sciences, microbial typing clearly affects several areas of applied microbiogical research. ...

Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology.

OpenAIRE

Belkum, Alex; Struelens, M.; Visser, Arjan; Verbrugh, Henri; Tibayrench, M.

2001-01-01

textabstractCurrently, genetic typing of microorganisms is widely used in several major fields of microbiological research. Taxonomy, research aimed at elucidation of evolutionary dynamics or phylogenetic relationships, population genetics of microorganisms, and microbial epidemiology all rely on genetic typing data for discrimination between genotypes. Apart from being an essential component of these fundamental sciences, microbial typing clearly affects several areas of applied microbiologi...

Two families with MYH7 distal myopathy associated with cardiomyopathy and core formations.

Science.gov (United States)

Naddaf, Elie; Waclawik, Andrew J

2015-03-01

Laing distal myopathy is caused by MYH7 gene mutations. Multiple families have been reported with varying patterns of skeletal and cardiac involvement as well as histopathological findings. We report 2 families with p.Glu1508del mutation with detailed electrophysiological and muscle pathology findings. All patients displayed the classic phenotype with weakness starting in the anterior compartment of the legs with a "hanging great toe." It was followed by finger extensors involvement, relatively sparing the extensor indicis proprius, giving the appearance of a "pointing index" finger. All the affected individuals had a dilated cardiomyopathy and core formations on muscle biopsy. Unexpectedly, neurogenic changes were also observed in some individuals. Both families were initially misdiagnosed with either central core disease or hereditary neuropathy. Recognizing the classic phenotype, screening for cardiac involvement that may be clinically silent, and determining the mode of inheritance help with selecting the appropriate genetic test.

Therapeutic approaches to genetic disorders

African Journals Online (AJOL)

salah

Although prevention is the ideal goal for genetic disorders, various types of therapeutic ... The patient being ... pirical or aimed at controlling or mediating signs and symptoms without care. ... plications and gene therapy approaches .... genes family, have opened a wide and .... cancer where nanoparticles are used to.

Genetically modified soybean plants and their ecosystem

Directory of Open Access Journals (Sweden)

Milošević Mirjana B.

2004-01-01

Full Text Available Transgenic plants are developed by introgressing new genes using methods of molecular genetics and genetic engineering. The presence of these genes in plant genome is identified on the basis of specific oligonucleotides primers, and the use of PCR (Polymerase Chain Reaction and DNA fragments multiplication. Genetically modified plants such as soybean constitute a newly created bioenergetic potential whose gene expression can cause disturbance of the biological balance ecosystem, soil structure and soil microbiological activity. Genetically modified plants may acquire monogenic or polygenic traits causing genetic and physiological changes in these plants, which may elicit a certain reaction of the environment including changes of microbiological composition of soil rhizosphere. The aim of introgressing genes for certain traits into a cultivated plant is to enhance its yield and intensify food production. There are more and more genetically modified plant species such as soybean, corn, potato, rice and others and there is a pressure to use them as human food and animal feed. Genetically modified soybean plants with introgressed gene for resistance to total herbicides, such as Round-up, are more productive than non-modified herbicide-sensitive soybeans.

Genetic engineering combined with deep UV resonance Raman spectroscopy for structural characterization of amyloid-like fibrils.

Science.gov (United States)

Sikirzhytski, Vitali; Topilina, Natalya I; Higashiya, Seiichiro; Welch, John T; Lednev, Igor K

2008-05-07

Elucidating the structure of the cross-beta core in large amyloid fibrils is a challenging problem in modern structural biology. For the first time, a set of de novo polypeptides was genetically engineered to form amyloid-like fibrils with similar morphology and yet different strand length. Differential ultraviolet Raman spectroscopy allowed for separation of the spectroscopic signatures of the highly ordered beta-sheet strands and turns of the fibril core. The relationship between Raman frequencies and Ramachandran dihedral angles of the polypeptide backbone indicates the nature of the beta-sheet and turn structural elements.

Identification of novel genetic markers of breast cancer survival