Open Genetic Code: on open source in the life sciences

OpenAIRE

Deibel, Eric

2014-01-01

The introduction of open source in the life sciences is increasingly being suggested as an alternative to patenting. This is an alternative, however, that takes its shape at the intersection of the life sciences and informatics. Numerous examples can be identified wherein open source in the life sciences refers to access, sharing and collaboration as informatic practices. This includes open source as an experimental model and as a more sophisticated approach of genetic engineering. The first ...

Open Genetic Code: on open source in the life sciences.

Science.gov (United States)

Deibel, Eric

2014-01-01

The introduction of open source in the life sciences is increasingly being suggested as an alternative to patenting. This is an alternative, however, that takes its shape at the intersection of the life sciences and informatics. Numerous examples can be identified wherein open source in the life sciences refers to access, sharing and collaboration as informatic practices. This includes open source as an experimental model and as a more sophisticated approach of genetic engineering. The first section discusses the greater flexibly in regard of patenting and the relationship to the introduction of open source in the life sciences. The main argument is that the ownership of knowledge in the life sciences should be reconsidered in the context of the centrality of DNA in informatic formats. This is illustrated by discussing a range of examples of open source models. The second part focuses on open source in synthetic biology as exemplary for the re-materialization of information into food, energy, medicine and so forth. The paper ends by raising the question whether another kind of alternative might be possible: one that looks at open source as a model for an alternative to the commodification of life that is understood as an attempt to comprehensively remove the restrictions from the usage of DNA in any of its formats.

International Conference on Land Use / Cover Change Dynamics

Institute of Scientific and Technical Information of China (English)

无

2001-01-01

Organized by: Beijing Normal University, National Natural Science Foundation of China Hosted by: Institute of Resources Science, Beijing Normal University Key Laboratory of Environmental Change and Natural Disaster, Ministry of Education of China Topics: 1) Detecting and monitoring LUCC 2) Temporal-spatial characteristics in LUCC 3) Driving model for LUCC 4) Forecasting and modeling LUCC 5) Phenological and biochemical response on LUCC 6) Regional LUCC and microclimate 7) LUCC in the context of global change 8) Impact of global change on the sustainable land-use modeling Abstract submission: The official language of this conference is English. We invite papers written in English and an abstract of less than one page of standard A4 size to the Conference Secretariat by Apr 15, 2001. Registration Fee: 280 US$ (300 US$ after July 15, 2001) Add：No. 19, Xinjiekouwai Street, 100875, Institute of Resources Science, Beijing Normal University, Beijing, China Tel：86-10-62207656 or 62209024 Fax：010-62208178 http:// 202.112.93.50/LUCCD2001/index.html E-mail: Pwang@bnu.edu.cn Cyh@bnu.edu.cn

Achieving open access to conservation science.

Science.gov (United States)

Fuller, Richard A; Lee, Jasmine R; Watson, James E M

2014-12-01

Conservation science is a crisis discipline in which the results of scientific enquiry must be made available quickly to those implementing management. We assessed the extent to which scientific research published since the year 2000 in 20 conservation science journals is publicly available. Of the 19,207 papers published, 1,667 (8.68%) are freely downloadable from an official repository. Moreover, only 938 papers (4.88%) meet the standard definition of open access in which material can be freely reused providing attribution to the authors is given. This compares poorly with a comparable set of 20 evolutionary biology journals, where 31.93% of papers are freely downloadable and 7.49% are open access. Seventeen of the 20 conservation journals offer an open access option, but fewer than 5% of the papers are available through open access. The cost of accessing the full body of conservation science runs into tens of thousands of dollars per year for institutional subscribers, and many conservation practitioners cannot access pay-per-view science through their workplace. However, important initiatives such as Research4Life are making science available to organizations in developing countries. We urge authors of conservation science to pay for open access on a per-article basis or to choose publication in open access journals, taking care to ensure the license allows reuse for any purpose providing attribution is given. Currently, it would cost $51 million to make all conservation science published since 2000 freely available by paying the open access fees currently levied to authors. Publishers of conservation journals might consider more cost effective models for open access and conservation-oriented organizations running journals could consider a broader range of options for open access to nonmembers such as sponsorship of open access via membership fees. © 2014 The Authors. Conservation Biology published by Wiley Periodicals, Inc., on behalf of the Society for

Open Genetic Code : On open source in the life sciences

NARCIS (Netherlands)

Deibel, E.

2014-01-01

The introduction of open source in the life sciences is increasingly being suggested as an alternative to patenting. This is an alternative, however, that takes its shape at the intersection of the life sciences and informatics. Numerous examples can be identified wherein open source in the life

Open-science projects get kickstarted at CERN

CERN Multimedia

Achintya Rao

2015-01-01

CERN is one of the host sites for the Mozilla Science Lab Global Sprint to be held on 4 and 5 June, which will see participants around the world work on projects to further open science and educational tools.   IdeaSquare will be hosting the event at CERN. The Mozilla Science Lab Global Sprint was first held in 2014 to bring together open-science practitioners and enthusiasts to collaborate on projects designed to advance science on the open web. The sprint is a loosely federated event, and CERN is participating in the 2015 edition, hosting sprinters in the hacker-friendly IdeaSquare. Five projects have been formally proposed and CERN users and staff are invited to participate in a variety of ways. A special training session will also be held to introduce the CERN community to existing open-science and collaborative tools, including ones that have been deployed at CERN. 1. GitHub Science Badges: Sprinters will work on developing a badge-style visual representation of how open a software pro...

Open Science Interview mit PA

OpenAIRE

Scheliga, Kaja

2014-01-01

This interview is part of a series of interviews on open science and digital scholarship conducted in 2013 with researchers from various backgrounds. For an analysis of the interviews see: Scheliga, Kaja and Sascha Friesike. 2014. “Putting open science into practice: A social dilemma?” First Monday. Volume 19, Number 9. DOI: http://dx.doi.org/10.5210/fm.v19i9.5381

Open Science Interview mit IB

OpenAIRE

Scheliga, Kaja

2014-01-01

This interview is part of a series of interviews on open science and digital scholarship conducted in 2013 with researchers from various backgrounds. For an analysis of the interviews see: Scheliga, Kaja and Sascha Friesike. 2014. “Putting open science into practice: A social dilemma?” First Monday. Volume 19, Number 9. DOI: http://dx.doi.org/10.5210/fm.v19i9.5381

BOOK REVIEW: OPENING SCIENCE, THE EVOLVING GUIDE ...

Science.gov (United States)

The way we get our funding, collaborate, do our research, and get the word out has evolved over hundreds of years but we can imagine a more open science world, largely facilitated by the internet. The movement towards this more open way of doing and presenting science is coming, and it is not taking hundreds of years. If you are interested in these trends, and would like to find out more about where this is all headed and what it means to you, consider downloding Opening Science, edited by Sönke Bartling and Sascha Friesike, subtitled The Evolving Guide on How the Internet is Changing Research, Collaboration, and Scholarly Publishing. In 26 chapters by various authors from a range of disciplines the book explores the developing world of open science, starting from the first scientific revolution and bringing us to the next scientific revolution, sometimes referred to as “Science 2.0”. Some of the articles deal with the impact of the changing landscape of how science is done, looking at the impact of open science on Academia, or journal publishing, or medical research. Many of the articles look at the uses, pitfalls, and impact of specific tools, like microblogging (think Twitter), social networking, and reference management. There is lots of discussion and definition of terms you might use or misuse like “altmetrics” and “impact factor”. Science will probably never be completely open, and Twitter will probably never replace the journal article,

Tools for open geospatial science

Science.gov (United States)

Petras, V.; Petrasova, A.; Mitasova, H.

2017-12-01

Open science uses open source to deal with reproducibility challenges in data and computational sciences. However, just using open source software or making the code public does not make the research reproducible. Moreover, the scientists face the challenge of learning new unfamiliar tools and workflows. In this contribution, we will look at a graduate-level course syllabus covering several software tools which make validation and reuse by a wider professional community possible. For the novices in the open science arena, we will look at how scripting languages such as Python and Bash help us reproduce research (starting with our own work). Jupyter Notebook will be introduced as a code editor, data exploration tool, and a lab notebook. We will see how Git helps us not to get lost in revisions and how Docker is used to wrap all the parts together using a single text file so that figures for a scientific paper or a technical report can be generated with a single command. We will look at examples of software and publications in the geospatial domain which use these tools and principles. Scientific contributions to GRASS GIS, a powerful open source desktop GIS and geoprocessing backend, will serve as an example of why and how to publish new algorithms and tools as part of a bigger open source project.

Collaborative Web between open and closed science

Directory of Open Access Journals (Sweden)

Alessandro Delfanti

2008-06-01

Full Text Available “Web 2.0” is the mantra enthusiastically repeated in the past few years on anything concerning the production of culture, dialogue and online communication. Even science is changing, along with the processes involving the communication, collaboration and cooperation created through the web, yet rooted in some of its historical features of openness. For this issue, JCOM has asked some experts on the most recent changes in science to analyse the potential and the contradictions lying in online collaborative science. The new open science feeds on the opportunity to freely contribute to knowledge production, sharing not only data, but also software and hardware. But it is open also to the outside, where citizens use Web 2.0 instruments to discuss about science in a horizontal way.

Open Science Interview mit Christian Heise

OpenAIRE

Scheliga, Kaja

2014-01-01

This interview is part of a series of interviews on open science and digital scholarship conducted in 2013 with researchers from various backgrounds. For an analysis of the interviews see: Scheliga, Kaja and Sascha Friesike. 2014. “Putting open science into practice: A social dilemma?” First Monday. Volume 19, Number 9. DOI: http://dx.doi.org/10.5210/fm.v19i9.5381

Open Science Interview mit Daniel Mietchen

OpenAIRE

Scheliga, Kaja

2014-01-01

This interview is part of a series of interviews on open science and digital scholarship conducted in 2013 with researchers from various backgrounds. For an analysis of the interviews see: Scheliga, Kaja and Sascha Friesike. 2014. “Putting open science into practice: A social dilemma?” First Monday. Volume 19, Number 9. DOI: http://dx.doi.org/10.5210/fm.v19i9.5381

Open Science Interview with Christobal Cobo

OpenAIRE

Scheliga, Kaja

2014-01-01

This interview is part of a series of interviews on open science and digital scholarship conducted in 2013 with researchers from various backgrounds. For an analysis of the interviews see: Scheliga, Kaja and Sascha Friesike. 2014. “Putting open science into practice: A social dilemma?” First Monday. Volume 19, Number 9. DOI: http://dx.doi.org/10.5210/fm.v19i9.5381

Open Science Interview with Jon Crowcroft

OpenAIRE

Scheliga, Kaja

2014-01-01

This interview is part of a series of interviews on open science and digital scholarship conducted in 2013 with researchers from various backgrounds. For an analysis of the interviews see: Scheliga, Kaja and Sascha Friesike. 2014. “Putting open science into practice: A social dilemma?” First Monday. Volume 19, Number 9. DOI: http://dx.doi.org/10.5210/fm.v19i9.5381

The open science grid

International Nuclear Information System (INIS)

Pordes, R.

2004-01-01

The U.S. LHC Tier-1 and Tier-2 laboratories and universities are developing production Grids to support LHC applications running across a worldwide Grid computing system. Together with partners in computer science, physics grid projects and active experiments, we will build a common national production grid infrastructure which is open in its architecture, implementation and use. The Open Science Grid (OSG) model builds upon the successful approach of last year's joint Grid2003 project. The Grid3 shared infrastructure has for over eight months provided significant computational resources and throughput to a range of applications, including ATLAS and CMS data challenges, SDSS, LIGO, and biology analyses, and computer science demonstrators and experiments. To move towards LHC-scale data management, access and analysis capabilities, we must increase the scale, services, and sustainability of the current infrastructure by an order of magnitude or more. Thus, we must achieve a significant upgrade in its functionalities and technologies. The initial OSG partners will build upon a fully usable, sustainable and robust grid. Initial partners include the US LHC collaborations, DOE and NSF Laboratories and Universities and Trillium Grid projects. The approach is to federate with other application communities in the U.S. to build a shared infrastructure open to other sciences and capable of being modified and improved to respond to needs of other applications, including CDF, D0, BaBar, and RHIC experiments. We describe the application-driven, engineered services of the OSG, short term plans and status, and the roadmap for a consortium, its partnerships and national focus

Open Science & Open Data Global Sprint 2016 | 2–3 June 2016

CERN Multimedia

Achintya Rao

2016-01-01

Join us as we learn to collaboratively build projects transforming science on the web! Thursday 2 June 2016 8.00 a.m. – Friday 3 June 20.00 p.m. CERN (3179-R-E06) This two-day sprint event brings together researchers, coders, librarians and the public from around the globe to hack on open science and open data projects in their communities. This year, we have four tracks you can contribute to: tools, citizen science, curriculum and open data. CERN is hosting three projects: Everware Open Cosmics CrowdAI   You can also participate in any of the other mozsprint projects for 2016. For more information, please visit: https://indico.cern.ch/event/535760/

Catalyzing Open and Collaborative Science to Address Global ...

International Development Research Centre (IDRC) Digital Library (Canada)

As the cost of computer hardware continues to drop and developing-country researchers get increased access to the Internet and mobile phones, each offers the potential for solving these development challenges by opening up the scientific process. What is open science? At the heart of the open science concept is the ...

Opening science: New publication forms in science

Directory of Open Access Journals (Sweden)

Scheliga, Kaja

2014-12-01

Full Text Available [english] Digital technologies change how scientists access and process information and consequently impact publication forms in science. Even though the core of scientific publications has remained the same, established publication formats, such as the scientific paper or book, are succumbing to the transitions caused by digital technologies. At the same time, new online tools enable new publication forms, such as blogs, microblogs or wikis, to emerge. This article explores the changing and emerging publications forms in science and also reflects upon the changing role of libraries. The transformations of publishing forms are discussed in the context of open science.

New science on the Open Science Grid

Energy Technology Data Exchange (ETDEWEB)

Pordes, R; Altunay, M; Sehgal, C [Fermi National Accelerator Laboratory, Batavia, IL 60510 (United States); Avery, P [University of Florida, Gainesville, FL 32611 (United States); Bejan, A; Gardner, R; Wilde, M [University of Chicago, Chicago, IL 60607 (United States); Blackburn, K [California Institute of Technology, Pasadena, CA 91125 (United States); Blatecky, A; McGee, J [Renaissance Computing Institute, Chapel Hill, NC 27517 (United States); Kramer, B; Olson, D; Roy, A [Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States); Livny, M [University of Wisconsin, Madison, Madison, WI 53706 (United States); Potekhin, M; Quick, R; Wenaus, T [Indiana University, Bloomington, IN 47405 (United States); Wuerthwein, F [University of California, San Diego, La Jolla, CA 92093 (United States)], E-mail: ruth@fnal.gov

2008-07-15

The Open Science Grid (OSG) includes work to enable new science, new scientists, and new modalities in support of computationally based research. There are frequently significant sociological and organizational changes required in transformation from the existing to the new. OSG leverages its deliverables to the large-scale physics experiment member communities to benefit new communities at all scales through activities in education, engagement, and the distributed facility. This paper gives both a brief general description and specific examples of new science enabled on the OSG. More information is available at the OSG web site: www.opensciencegrid.org.

New science on the Open Science Grid

International Nuclear Information System (INIS)

Pordes, R; Altunay, M; Sehgal, C; Avery, P; Bejan, A; Gardner, R; Wilde, M; Blackburn, K; Blatecky, A; McGee, J; Kramer, B; Olson, D; Roy, A; Livny, M; Potekhin, M; Quick, R; Wenaus, T; Wuerthwein, F

2008-01-01

The Open Science Grid (OSG) includes work to enable new science, new scientists, and new modalities in support of computationally based research. There are frequently significant sociological and organizational changes required in transformation from the existing to the new. OSG leverages its deliverables to the large-scale physics experiment member communities to benefit new communities at all scales through activities in education, engagement, and the distributed facility. This paper gives both a brief general description and specific examples of new science enabled on the OSG. More information is available at the OSG web site: www.opensciencegrid.org

Open Science: Dimensions to a new scientific practice

Directory of Open Access Journals (Sweden)

Adriana Carla Silva de Oliveira

2016-08-01

Full Text Available Introduction:The practices of e-science and the use and reuse of scientific data have constituted a new scientific work that leads to the reflection on new regulatory, legal, institutional and technological frameworks for open science. Objective: This study shows the following research question: which dimensions provide sustainability for the formulation of a policy geared to open science and its practices in the Brazilian context? The aim of this study is to discuss the dimensions that support transversely the formulation of a policy for open science and its scientific practices. Methodology:Theoretically, the study is guided by the fourth scientific paradigm grounded in the e-Science. The methodology is supported by Bufrem’s studies (2013, which propose an alternative and multidimensional model for analysis and discussion of scientific research. Technically, the literature review and documentary survey were the methods used on the Data Lifecycle scientific model, laws and international agreements.For this study purpose, five dimensions were proposed, namely: epistemological, political, ethical-legal-cultural, morphological, and technological. Results: This studyunderstands that these dimensions substantiate an information policy or the development of minimum guidelines for the open science agenda in Brazil. Conclusions: The dimensions put away the reductionist perspective on survey data and they conducted the study for the multi-dimensional and multi-relational vision of open science.

Can psychology walk the walk of open science?

Science.gov (United States)

Hesse, Bradford W

2018-01-01

An "open science movement" is gaining traction across many disciplines within the research enterprise but is also precipitating consternation among those who worry that too much disruption may be hampering professional productivity. Despite this disruption, proponents of open data collaboration have argued that some of the biggest problems of the 21st century need to be solved with the help of many people and that data sharing will be the necessary engine to make that happen. In the United States, a national strategic plan for data sharing encouraged the federally funded scientific agencies to (a) publish open data for community use in discoverable, machine-readable, and useful ways; (b) work with public and civil society organizations to set priorities for data to be shared; (c) support innovation and feedback on open data solutions; and (d) continue efforts to release and enhance high-priority data sets funded by taxpayer dollars. One of the more visible open data projects in the psychological sciences is the presidentially announced "Brain Research Through Advancing Innovative Neurotechnologies" (BRAIN) initiative. Lessons learned from initiatives such as these are instructive both from the perspective of open science within psychology and from the perspective of understanding the psychology of open science. Recommendations for creating better pathways to "walk the walk" in open science include (a) nurturing innovation and agile learning, (b) thinking outside the paradigm, (c) creating simplicity from complexity, and (d) participating in continuous learning evidence platforms. (PsycINFO Database Record (c) 2018 APA, all rights reserved).

Recommendations for open data science.

Science.gov (United States)

Gymrek, Melissa; Farjoun, Yossi

2016-01-01

Life science research increasingly relies on large-scale computational analyses. However, the code and data used for these analyses are often lacking in publications. To maximize scientific impact, reproducibility, and reuse, it is crucial that these resources are made publicly available and are fully transparent. We provide recommendations for improving the openness of data-driven studies in life sciences.

OpenSesame: An Open-source, Graphical Experiment Builder for the Social Sciences

NARCIS (Netherlands)

Mathot, S.; Schreij, D.B.B.; Theeuwes, J.

2012-01-01

In the present article, we introduce OpenSesame, a graphical experiment builder for the social sciences. OpenSesame is free, open-source, and cross-platform. It features a comprehensive and intuitive graphical user interface and supports Python scripting for complex tasks. Additional functionality,

Stepping up Open Science Training for European Research

Directory of Open Access Journals (Sweden)

Birgit Schmidt

2016-06-01

Full Text Available Open science refers to all things open in research and scholarly communication: from publications and research data to code, models and methods as well as quality evaluation based on open peer review. However, getting started with implementing open science might not be as straightforward for all stakeholders. For example, what do research funders expect in terms of open access to publications and/or research data? Where and how to publish research data? How to ensure that research results are reproducible? These are all legitimate questions and, in particular, early career researchers may benefit from additional guidance and training. In this paper we review the activities of the European-funded FOSTER project which organized and supported a wide range of targeted trainings for open science, based on face-to-face events and on a growing suite of e-learning courses. This article reviews the approach and experiences gained from the first two years of the project.

Open access: changing global science publishing.

Science.gov (United States)

Gasparyan, Armen Yuri; Ayvazyan, Lilit; Kitas, George D

2013-08-01

The article reflects on open access as a strategy of changing the quality of science communication globally. Successful examples of open-access journals are presented to highlight implications of archiving in open digital repositories for the quality and citability of research output. Advantages and downsides of gold, green, and hybrid models of open access operating in diverse scientific environments are described. It is assumed that open access is a global trend which influences the workflow in scholarly journals, changing their quality, credibility, and indexability.

Open Science Interview mit Sönke Bartling

OpenAIRE

Scheliga, Kaja

2014-01-01

This interview is part of a series of interviews on open science and digital scholarship conducted in 2013 with researchers from various backgrounds. For an analysis of the interviews see: Scheliga, Kaja and Sascha Friesike. 2014. “Putting open science into practice: A social dilemma?” First Monday. Volume 19, Number 9. DOI: http://dx.doi.org/10.5210/fm.v19i9.5381

Secondary Students' Perceptions of Open Science Textbooks

Science.gov (United States)

Morales, Rebecca; Baker, Alesha

2018-01-01

In an attempt to align instructional resources with new state standards and to increase teacher awareness of these standards, one large suburban public school district piloted the development and adoption of open secondary science textbooks. Open textbooks created by teachers in grades six through nine replaced conventional science textbooks…

Open Science: Trends in the Development of Science Learning

Science.gov (United States)

Scanlon, Eileen

2011-01-01

This article comments on some trends in the evolution of science teaching at a distance using the Open University UK (OU UK) experience as a benchmark. Even from the first years of the university there was an understanding of the potential role for media in developing methods for teaching science at a distance, in particular the potential for…

GOSH! A roadmap for open-source science hardware

CERN Multimedia

Stefania Pandolfi

2016-01-01

The goal of the Gathering for Open Science Hardware (GOSH! 2016), held from 2 to 5 March 2016 at IdeaSquare, was to lay the foundations of the open-source hardware for science movement.   The participants in the GOSH! 2016 meeting gathered in IdeaSquare. (Image: GOSH Community) “Despite advances in technology, many scientific innovations are held back because of a lack of affordable and customisable hardware,” says François Grey, a professor at the University of Geneva and coordinator of Citizen Cyberlab – a partnership between CERN, the UN Institute for Training and Research and the University of Geneva – which co-organised the GOSH! 2016 workshop. “This scarcity of accessible science hardware is particularly obstructive for citizen science groups and humanitarian organisations that don’t have the same economic means as a well-funded institution.” Instead, open sourcing science hardware co...

Relationship among land surface temperature and LUCC, NDVI in typical karst area.

Science.gov (United States)

Deng, Yuanhong; Wang, Shijie; Bai, Xiaoyong; Tian, Yichao; Wu, Luhua; Xiao, Jianyong; Chen, Fei; Qian, Qinghuan

2018-01-12

Land surface temperature (LST) can reflect the land surface water-heat exchange process comprehensively, which is considerably significant to the study of environmental change. However, research about LST in karst mountain areas with complex topography is scarce. Therefore, we retrieved the LST in a karst mountain area from Landsat 8 data and explored its relationships with LUCC and NDVI. The results showed that LST of the study area was noticeably affected by altitude and underlying surface type. In summer, abnormal high-temperature zones were observed in the study area, perhaps due to karst rocky desertification. LSTs among different land use types significantly differed with the highest in construction land and the lowest in woodland. The spatial distributions of NDVI and LST exhibited opposite patterns. Under the spatial combination of different land use types, the LST-NDVI feature space showed an obtuse-angled triangle shape and showed a negative linear correlation after removing water body data. In summary, the LST can be retrieved well by the atmospheric correction model from Landsat 8 data. Moreover, the LST of the karst mountain area is controlled by altitude, underlying surface type and aspect. This study provides a reference for land use planning, ecological environment restoration in karst areas.

Perspectives on Open Science and scientific data sharing:an interdisciplinary workshop.

Science.gov (United States)

Destro Bisol, Giovanni; Anagnostou, Paolo; Capocasa, Marco; Bencivelli, Silvia; Cerroni, Andrea; Contreras, Jorge; Enke, Neela; Fantini, Bernardino; Greco, Pietro; Heeney, Catherine; Luzi, Daniela; Manghi, Paolo; Mascalzoni, Deborah; Molloy, Jennifer; Parenti, Fabio; Wicherts, Jelte; Boulton, Geoffrey

2014-01-01

Looking at Open Science and Open Data from a broad perspective. This is the idea behind "Scientific data sharing: an interdisciplinary workshop", an initiative designed to foster dialogue between scholars from different scientific domains which was organized by the Istituto Italiano di Antropologia in Anagni, Italy, 2-4 September 2013.We here report summaries of the presentations and discussions at the meeting. They deal with four sets of issues: (i) setting a common framework, a general discussion of open data principles, values and opportunities; (ii) insights into scientific practices, a view of the way in which the open data movement is developing in a variety of scientific domains (biology, psychology, epidemiology and archaeology); (iii) a case study of human genomics, which was a trail-blazer in data sharing, and which encapsulates the tension that can occur between large-scale data sharing and one of the boundaries of openness, the protection of individual data; (iv) open science and the public, based on a round table discussion about the public communication of science and the societal implications of open science. There were three proposals for the planning of further interdisciplinary initiatives on open science. Firstly, there is a need to integrate top-down initiatives by governments, institutions and journals with bottom-up approaches from the scientific community. Secondly, more should be done to popularize the societal benefits of open science, not only in providing the evidence needed by citizens to draw their own conclusions on scientific issues that are of concern to them, but also explaining the direct benefits of data sharing in areas such as the control of infectious disease. Finally, introducing arguments from social sciences and humanities in the educational dissemination of open data may help students become more profoundly engaged with Open Science and look at science from a broader perspective.

Social Media, Open Science, and Data Science Are Inextricably Linked.

Science.gov (United States)

Voytek, Bradley

2017-12-20

Should scientists use social media? Why practice open science? What is data science? Ten years ago, these phrases hardly existed. Now they are ubiquitous. Here I argue that these phenomena are inextricably linked and reflect similar underlying social and technological transformations. Copyright © 2017 Elsevier Inc. All rights reserved.

Pre-Service Teachers’ Attitudes Toward Teaching Science and Their Science Learning at Indonesia Open University

Directory of Open Access Journals (Sweden)

Nadi SUPRAPTO

2017-10-01

Full Text Available This study focuses on attitudes toward (teaching science and the learning of science for primary school among pre-service teachers at the Open University of Indonesia. A three-year longitudinal survey was conducted, involving 379 students as pre-service teachers (PSTs from the Open University in Surabaya regional office. Attitudes toward (teaching science’ (ATS instrument was used to portray PSTs’ preparation for becoming primary school teachers. Data analyses were used, including descriptive analysis and confirmatory factor analysis. The model fit of the attitudes toward (teaching science can be described from seven dimensions: self-efficacy for teaching science, the relevance of teaching science, gender-stereotypical beliefs, anxiety in teaching science, the difficulty of teaching science, perceived dependency on contextual factors, and enjoyment in teaching science. The results of the research also described science learning at the Open University of Indonesia looks like. Implications for primary teacher education are discussed.

The Historical Origins and Economic Logic of 'Open Science'

CERN Multimedia

CERN. Geneva

2008-01-01

Modern "big science" projects, such as the LHC experiments in physics that are being prepared to run at CERN, embody the distinctive ethos of cooperation and mechanisms of coordination among distributed groups of researchers that are characteristic of 'open science'. Much has been written about the institutions of open science, their supporting social norms, and their effectiveness in generating additions to the stock of reliable knowledge. But from where have these institutions and their supporting ethos come? How robust can we assume them to be in the face of the recent trends for universities and research institutes in some domains of science to seek to appropriate the benefits of new discoveries and inventions by asserting intellectual property claims? A search for the historical origins of the institutions of open science throws some new light on these issues, and the answers may offer some lessons for contemporary science and technology policy-making.

How FOSTER supports training Open Science in the GeoSciences

Science.gov (United States)

Orth, Astrid

2016-04-01

FOSTER (1) is about promoting and facilitating the adoption of Open Science by the European research community, and fostering compliance with the open access policies set out in Horizon 2020 (H2020). FOSTER aims to reach out and provide training to the wide range of disciplines and countries involved in the European Research Area (ERA) by offering and supporting face-to-face as well as distance training. Different stakeholders, mainly young researchers, are trained to integrate Open Science in their daily workflow, supporting researchers to optimise their research visibility and impact. Strengthening the institutional training capacity is achieved through a train-the-trainers approach. The two-and-half-year project started in February 2014 with identifying, enriching and providing training content on all relevant topics in the area of Open Science. One of the main elements was to support two rounds of trainings, which were conducted during 2014 and 2015, organizing more than 100 training events with around 3000 participants. The presentation will explain the project objectives and results and will look into best practice training examples, among them successful training series in the GeoSciences. The FOSTER portal that now holds a collection of training resources (e.g. slides and PDFs, schedules and design of training events dedicated to different audiences, video captures of complete events) is presented. It provides easy ways to identify learning materials and to create own e-learning courses based on the materials and examples. (1) FOSTER is funded through the European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement no 612425. http://fosteropenscience.eu

Open Data and Open Science for better Research in the Geo and Space Domain

Science.gov (United States)

Ritschel, B.; Seelus, C.; Neher, G.; Iyemori, T.; Koyama, Y.; Yatagai, A. I.; Murayama, Y.; King, T. A.; Hughes, S.; Fung, S. F.; Galkin, I. A.; Hapgood, M. A.; Belehaki, A.

2015-12-01

Main open data principles had been worked out in the run-up and finally adopted in the Open Data Charta at the G8 summit in Lough Erne, Northern Ireland in June 2013. Important principles are also valid for science data, such as Open Data by Default, Quality and Quantity, Useable by All, Releasing Data for Improved Governance, Releasing Data for Innovation. There is also an explicit relationship to such areas of high values as earth observation, education and geospatial data. The European union implementation plan of the Open Data Charta identifies among other things objectives such as making data available in an open format, enabling semantic interoperability, ensuring quality, documentation and where appropriate reconciliation across different data sources, implementing software solutionsallowing easy management, publication or visualization of datasets and simplifying clearance of intellectual property rights.Open Science is not just a list of already for a longer time known principles but stands for a lot of initiatives and projects around a better handling of scientific data and openly shared scientific knowledge. It is also about transparency in methodology and collection of data, availability and reuse of scientific data, public accessibility to scientific communication and using of social media to facility scientific collaboration. Some projects are concentrating on open sharing of free and open source software and even further hardware in kind of processing capabilities. In addition question about the mashup of data and publication and an open peer review process are addressed.Following the principles of open data and open science the newest results of the collaboration efforts in mashing up the data servers related to the Japanese IUGONET, the European Union ESPAS and the GFZ ISDC semantic Web projects will be presented here. The semantic Web based approach for the mashup is focusing on the design and implementation of a common but still distributed data

Open science versus commercialization: a modern research conflict?

Science.gov (United States)

Caulfield, Timothy; Harmon, Shawn He; Joly, Yann

2012-02-27

Efforts to improve research outcomes have resulted in genomic researchers being confronted with complex and seemingly contradictory instructions about how to perform their tasks. Over the past decade, there has been increasing pressure on university researchers to commercialize their work. Concurrently, they are encouraged to collaborate, share data and disseminate new knowledge quickly (that is, to adopt an open science model) in order to foster scientific progress, meet humanitarian goals, and to maximize the impact of their research. We present selected guidelines from three countries (Canada, United States, and United Kingdom) situated at the forefront of genomics to illustrate this potential policy conflict. Examining the innovation ecosystem and the messages conveyed by the different policies surveyed, we further investigate the inconsistencies between open science and commercialization policies. Commercialization and open science are not necessarily irreconcilable and could instead be envisioned as complementary elements of a more holistic innovation framework. Given the exploratory nature of our study, we wish to point out the need to gather additional evidence on the coexistence of open science and commercialization policies and on its impact, both positive and negative, on genomics academic research.

Open Science Interview with Carolina Ödman-Govender

OpenAIRE

Scheliga, Kaja

2014-01-01

This interview is part of a series of interviews on open science and digital scholarship conducted in 2013 with researchers from various backgrounds. For an analysis of the interviews see: Scheliga, Kaja and Sascha Friesike. 2014. “Putting open science into practice: A social dilemma?” First Monday. Volume 19, Number 9. DOI: http://dx.doi.org/10.5210/fm.v19i9.5381

Open science, e-science and the new technologies: Challenges and old problems in qualitative research in the social sciences

Directory of Open Access Journals (Sweden)

Ercilia García-Álvarez

2012-12-01

Full Text Available Purpose: As well as introducing the articles in the special issue titled "Qualitative Research in the Social Sciences", this article reviews the challenges, problems and main advances made by the qualitative paradigm in the context of the new European science policy based on open science and e-Science and analysis alternative technologies freely available in the 2.0 environment and their application to fieldwork and data analysis. Design/methodology: Theoretical review. Practical implications: The article identifies open access technologies with applications in qualitative research such as applications for smartphones and tablets, web platforms and specific qualitative data analysis software, all developed in both the e-Science context and the 2.0 environment. Social implications: The article discusses the possible role to be played by qualitative research in the open science and e-Science context and considers the impact of this new context on the size and structure of research groups, the development of truly collaborative research, the emergence of new ethical problems and quality assessment in review processes in an open environment. Originality/value: The article describes the characteristics that define the new scientific environment and the challenges posed for qualitative research, reviews the latest open access technologies available to researchers in terms of their main features and proposes specific applications suitable for fieldwork and data analysis.

An Open and Holistic Approach for Geo and Space Sciences

Science.gov (United States)

Ritschel, Bernd; Seelus, Christoph; Neher, Günther; Toshihiko, Iyemori; Yatagai, Akiyo; Koyama, Yukinobu; Murayama, Yasuhiro; King, Todd; Hughes, Steve; Fung, Shing; Galkin, Ivan; Hapgood, Mike; Belehaki, Anna

2016-04-01

Geo and space sciences thus far have been very successful, even often an open, cross-domain and holistic approach did not play an essential role. But this situation is changing rapidly. The research focus is shifting into more complex, non-linear and multi-domain specified phenomena, such as e.g. climate change or space environment. This kind of phenomena only can be understood step by step using the holistic idea. So, what is necessary for a successful cross-domain and holistic approach in geo and space sciences? Research and science in general become more and more dependent from a rich fundus of multi-domain data sources, related context information and the use of highly advanced technologies in data processing. Such buzzword phrases as Big Data and Deep Learning are reflecting this development. Big Data also addresses the real exponential growing of data and information produced by measurements or simulations. Deep Learning technology may help to detect new patterns and relationships in data describing high sophisticated natural phenomena. And further on, we should not forget science and humanities are only two sides of the same medal in the continuing human process of knowledge discovery. The concept of Open Data or in particular the open access to scientific data is addressing the free and open availability of -at least publicly founded and generated- data. The open availability of data covers the free use, reuse and redistribution of data which have been established with the formation of World Data Centers already more than 50 years ago. So, we should not forget, the foundation for open data is the responsibility of the individual scientist up until the big science institutions and organizations for a sustainable management of data. Other challenges are discovering and collecting the appropriate data, and preferably all of them or at least the majority of the right data. Therefore a network of individual or even better institutional catalog-based and at least

USGS Science Data Catalog - Open Data Advances or Declines

Science.gov (United States)

Frame, M. T.; Hutchison, V.; Zolly, L.; Wheeler, B.; Latysh, N.; Devarakonda, R.; Palanisamy, G.; Shrestha, B.

2014-12-01

The recent Office of Science and Technology Policy (OSTP) White House Open Data Policies (2013) have required Federal agencies to establish formal catalogues of their science data holdings and make these data easily available on Web sites, portals, and applications. As an organization, the USGS has historically excelled at making its data holdings freely available on its various Web sites (i.e., National, Scientific Programs, or local Science Center). In response to these requirements, the USGS Core Science Analytics, Synthesis, and Libraries program, in collaboration with DOE's Oak Ridge National Laboratory (ORNL) Mercury Consortium (funded by NASA, USGS, and DOE), and a number of other USGS organizations, established the Science Data Catalog (http://data.usgs.gov) cyberinfrastructure, content management processes/tools, and supporting policies. The USGS Science Data Catalog led the charge at USGS to improve the robustness of existing/future metadata collections; streamline and develop sustainable publishing to external aggregators (i.e., data.gov); and provide leadership to the U.S. Department of Interior in emerging Open Data policies, techniques, and systems. The session will discuss the current successes, challenges, and movement toward meeting these Open Data policies for USGS scientific data holdings. A retrospective look at the last year of implementation of these efforts within USGS will occur to determine whether these Open Data Policies are improving data access or limiting data availability. To learn more about the USGS Science Data Catalog, visit us at http://data.usgs.gov/info/about.html

Achieving Open Access to Conservation Science

Science.gov (United States)

Fuller, Richard A; Lee, Jasmine R; Watson, James E M

2014-01-01

Conservation science is a crisis discipline in which the results of scientific enquiry must be made available quickly to those implementing management. We assessed the extent to which scientific research published since the year 2000 in 20 conservation science journals is publicly available. Of the 19,207 papers published, 1,667 (8.68%) are freely downloadable from an official repository. Moreover, only 938 papers (4.88%) meet the standard definition of open access in which material can be freely reused providing attribution to the authors is given. This compares poorly with a comparable set of 20 evolutionary biology journals, where 31.93% of papers are freely downloadable and 7.49% are open access. Seventeen of the 20 conservation journals offer an open access option, but fewer than 5% of the papers are available through open access. The cost of accessing the full body of conservation science runs into tens of thousands of dollars per year for institutional subscribers, and many conservation practitioners cannot access pay-per-view science through their workplace. However, important initiatives such as Research4Life are making science available to organizations in developing countries. We urge authors of conservation science to pay for open access on a per-article basis or to choose publication in open access journals, taking care to ensure the license allows reuse for any purpose providing attribution is given. Currently, it would cost $51 million to make all conservation science published since 2000 freely available by paying the open access fees currently levied to authors. Publishers of conservation journals might consider more cost effective models for open access and conservation-oriented organizations running journals could consider a broader range of options for open access to nonmembers such as sponsorship of open access via membership fees. Obtención de Acceso Abierto a la Ciencia de la Conservación Resumen La ciencia de la conservación es una

Putting open science into practice: A social dilemma?

NARCIS (Netherlands)

Scheliga, Kaja; Friesike, Sascha

2014-01-01

Digital technologies carry the promise of transforming science and opening up the research process. We interviewed researchers from a variety of backgrounds about their attitudes towards and experiences with openness in their research practices. We observe a considerable discrepancy between the

Embracing Open Source for NASA's Earth Science Data Systems

Science.gov (United States)

Baynes, Katie; Pilone, Dan; Boller, Ryan; Meyer, David; Murphy, Kevin

2017-01-01

The overarching purpose of NASAs Earth Science program is to develop a scientific understanding of Earth as a system. Scientific knowledge is most robust and actionable when resulting from transparent, traceable, and reproducible methods. Reproducibility includes open access to the data as well as the software used to arrive at results. Additionally, software that is custom-developed for NASA should be open to the greatest degree possible, to enable re-use across Federal agencies, reduce overall costs to the government, remove barriers to innovation, and promote consistency through the use of uniform standards. Finally, Open Source Software (OSS) practices facilitate collaboration between agencies and the private sector. To best meet these ends, NASAs Earth Science Division promotes the full and open sharing of not only all data, metadata, products, information, documentation, models, images, and research results but also the source code used to generate, manipulate and analyze them. This talk focuses on the challenges to open sourcing NASA developed software within ESD and the growing pains associated with establishing policies running the gamut of tracking issues, properly documenting build processes, engaging the open source community, maintaining internal compliance, and accepting contributions from external sources. This talk also covers the adoption of existing open source technologies and standards to enhance our custom solutions and our contributions back to the community. Finally, we will be introducing the most recent OSS contributions from NASA Earth Science program and promoting these projects for wider community review and adoption.

TCIA: An information resource to enable open science.

Science.gov (United States)

Prior, Fred W; Clark, Ken; Commean, Paul; Freymann, John; Jaffe, Carl; Kirby, Justin; Moore, Stephen; Smith, Kirk; Tarbox, Lawrence; Vendt, Bruce; Marquez, Guillermo

2013-01-01

Reusable, publicly available data is a pillar of open science. The Cancer Imaging Archive (TCIA) is an open image archive service supporting cancer research. TCIA collects, de-identifies, curates and manages rich collections of oncology image data. Image data sets have been contributed by 28 institutions and additional image collections are underway. Since June of 2011, more than 2,000 users have registered to search and access data from this freely available resource. TCIA encourages and supports cancer-related open science communities by hosting and managing the image archive, providing project wiki space and searchable metadata repositories. The success of TCIA is measured by the number of active research projects it enables (>40) and the number of scientific publications and presentations that are produced using data from TCIA collections (39).

Pre-Service Teachers' Attitudes toward Teaching Science and Their Science Learning at Indonesia Open University

Science.gov (United States)

Suprapto, Nadi; Mursid, Ali

2017-01-01

This study focuses on attitudes toward (teaching) science and the learning of science for primary school among pre-service teachers at the Open University of Indonesia. A three-year longitudinal survey was conducted, involving 379 students as pre-service teachers (PSTs) from the Open University in Surabaya regional office. Attitudes toward…

An open science cloud for scientific research

Science.gov (United States)

Jones, Bob

2016-04-01

The Helix Nebula initiative was presented at EGU 2013 (http://meetingorganizer.copernicus.org/EGU2013/EGU2013-1510-2.pdf) and has continued to expand with more research organisations, providers and services. The hybrid cloud model deployed by Helix Nebula has grown to become a viable approach for provisioning ICT services for research communities from both public and commercial service providers (http://dx.doi.org/10.5281/zenodo.16001). The relevance of this approach for all those communities facing societal challenges in explained in a recent EIROforum publication (http://dx.doi.org/10.5281/zenodo.34264). This presentation will describe how this model brings together a range of stakeholders to implement a common platform for data intensive services that builds upon existing public funded e-infrastructures and commercial cloud services to promote open science. It explores the essential characteristics of a European Open Science Cloud if it is to address the big data needs of the latest generation of Research Infrastructures. The high-level architecture and key services as well as the role of standards is described. A governance and financial model together with the roles of the stakeholders, including commercial service providers and downstream business sectors, that will ensure a European Open Science Cloud can innovate, grow and be sustained beyond the current project cycles is described.

Persistent Identifiers, Discoverability and Open Science (Communication)

Science.gov (United States)

Murphy, Fiona; Lehnert, Kerstin; Hanson, Brooks

2016-04-01

Early in 2016, the American Geophysical Union announced it was incorporating ORCIDs into its submission workflows. This was accompanied by a strong statement supporting the use of other persistent identifiers - such as IGSNs, and the CrossRef open registry 'funding data'. This was partly in response to funders' desire to track and manage their outputs. However the more compelling argument, and the reason why the AGU has also signed up to the Center for Open Science's Transparency and Openness Promotion (TOP) Guidelines (http://cos.io/top), is that ultimately science and scientists will be the richer for these initiatives due to increased opportunities for interoperability, reproduceability and accreditation. The AGU has appealed to the wider community to engage with these initiatives, recognising that - unlike the introduction of Digital Object Identifiers (DOIs) for articles by CrossRef - full, enriched use of persistent identifiers throughout the scientific process requires buy-in from a range of scholarly communications stakeholders. At the same time, across the general research landscape, initiatives such as Project CRediT (contributor roles taxonomy), Publons (reviewer acknowledgements) and the forthcoming CrossRef DOI Event Tracker are contributing to our understanding and accreditation of contributions and impact. More specifically for earth science and scientists, the cross-functional Coalition for Publishing Data in the Earth and Space Sciences (COPDESS) was formed in October 2014 and is working to 'provide an organizational framework for Earth and space science publishers and data facilities to jointly implement and promote common policies and procedures for the publication and citation of data across Earth Science journals'. Clearly, the judicious integration of standards, registries and persistent identifiers such as ORCIDs and International Geo Sample Numbers (IGSNs) to the research and research output processes is key to the success of this venture

Accelerating Translational Research through Open Science: The Neuro Experiment.

Science.gov (United States)

Gold, E Richard

2016-12-01

Translational research is often afflicted by a fundamental problem: a limited understanding of disease mechanisms prevents effective targeting of new treatments. Seeking to accelerate research advances and reimagine its role in the community, the Montreal Neurological Institute (Neuro) announced in the spring of 2016 that it is launching a five-year experiment during which it will adopt Open Science-open data, open materials, and no patenting-across the institution. The experiment seeks to examine two hypotheses. The first is whether the Neuro's Open Science initiative will attract new private partners. The second hypothesis is that the Neuro's institution-based approach will draw companies to the Montreal region, where the Neuro is based, leading to the creation of a local knowledge hub. This article explores why these hypotheses are likely to be true and describes the Neuro's approach to exploring them.

Accelerating Translational Research through Open Science: The Neuro Experiment.

Directory of Open Access Journals (Sweden)

E Richard Gold

2016-12-01

Full Text Available Translational research is often afflicted by a fundamental problem: a limited understanding of disease mechanisms prevents effective targeting of new treatments. Seeking to accelerate research advances and reimagine its role in the community, the Montreal Neurological Institute (Neuro announced in the spring of 2016 that it is launching a five-year experiment during which it will adopt Open Science-open data, open materials, and no patenting-across the institution. The experiment seeks to examine two hypotheses. The first is whether the Neuro's Open Science initiative will attract new private partners. The second hypothesis is that the Neuro's institution-based approach will draw companies to the Montreal region, where the Neuro is based, leading to the creation of a local knowledge hub. This article explores why these hypotheses are likely to be true and describes the Neuro's approach to exploring them.

Transparency: the emerging third dimension of Open Science and Open Data

Directory of Open Access Journals (Sweden)

Liz Lyon

2016-03-01

Full Text Available This paper presents an exploration of the concept of research transparency. The policy context is described and situated within the broader arena of open science. This is followed by commentary on transparency within the research process, which includes a brief overview of the related concept of reproducibility and the associated elements of research integrity, fraud and retractions. A two-dimensional model or continuum of open science is considered and the paper builds on this foundation by presenting a three-dimensional model, which includes the additional axis of ‘transparency’. The concept is further unpacked and preliminary definitions of key terms are introduced: transparency, transparency action, transparency agent and transparency tool.  An important linkage is made to the research lifecycle as a setting for potential transparency interventions by libraries. Four areas are highlighted as foci for enhanced engagement with transparency goals: Leadership and Policy, Advocacy and Training, Research Infrastructures and Workforce Development.

Mapping the hinterland: Data issues in open science.

Science.gov (United States)

Grand, Ann; Wilkinson, Clare; Bultitude, Karen; Winfield, Alan F T

2016-01-01

Open science is a practice in which the scientific process is shared completely and in real time. It offers the potential to support information flow, collaboration and dialogue among professional and non-professional participants. Using semi-structured interviews and case studies, this research investigated the relationship between open science and public engagement. This article concentrates on three particular areas of concern that emerged: first, how to effectively contextualise and narrate information to render it accessible, as opposed to simply available; second, concerns about data quantity and quality; and third, concerns about the skills required for effective contextualisation, mapping and interpretation of information. © The Author(s) 2014.

Mapping the hinterland: Data issues in open science

Science.gov (United States)

Grand, Ann; Wilkinson, Clare; Bultitude, Karen; Winfield, Alan F. T.

2016-01-01

Open science is a practice in which the scientific process is shared completely and in real time. It offers the potential to support information flow, collaboration and dialogue among professional and non-professional participants. Using semi-structured interviews and case studies, this research investigated the relationship between open science and public engagement. This article concentrates on three particular areas of concern that emerged: first, how to effectively contextualise and narrate information to render it accessible, as opposed to simply available; second, concerns about data quantity and quality; and third, concerns about the skills required for effective contextualisation, mapping and interpretation of information. PMID:24769860

Pre-Service Teachers’ Attitudes Toward Teaching Science and Their Science Learning at Indonesia Open University

OpenAIRE

Nadi SUPRAPTO; Ali MURSID

2017-01-01

This study focuses on attitudes toward (teaching) science and the learning of science for primary school among pre-service teachers at the Open University of Indonesia. A three-year longitudinal survey was conducted, involving 379 students as pre-service teachers (PSTs) from the Open University in Surabaya regional office. Attitudes toward (teaching) science’ (ATS) instrument was used to portray PSTs’ preparation for becoming primary school teachers. Data analyses were used, including descrip...

Open Science as a Knowledge Transfer strategy

Science.gov (United States)

Grigorov, Ivo; Dalmeier-Thiessen, Suenje

2015-04-01

Beyond providing basic understanding of how our Blue Planet functions, flows and breathes, the collection of Earth & Marine Research disciplines are of major service to most of today's Societal Challenges: from Food Security and Sustainable Resource Management, to Renewable Energies, Climate Mitigation & Ecosystem Services and Hazards. Natural Resources are a key commodity in the long-term strategy of the EU Innovation Union(1), and better understanding of the natural process governing them, as well as science-based management are seen as a key area for stimulating future economic growth. Such potential places responsibility on research project managers to devise innovative methods to ensure effective transfer of new research to public and private sector users, and society at large. Open Science is about removing all barriers to full sphere basic research knowledge and outputs, not just the publishable part of research but also the data, the software code, and failed experiments. The concept is central to EU's Responsible Research and Innovation philosophy(2), and removing barriers to basic research measurably contributes to the EU's Blue Growth Agenda(3). Despite the potential of the internet age to deliver on that promise, only 50% of today's basic research is freely available(4). The talk will demonstrate how and why Open Science can be a first, passive but effective strategy for any research project to transfer knowledge to society by allowing access and dicoverability to the full sphere of new knowledge, not just the published outputs. Apart from contributing to economic growth, Open Science can also optimize collaboration, within academia, assist with better engagement of citizen scientists into the research process and co-creation of solutions to societal challenges, as well as providing a solid ground for more sophisticated communication strategies and Ocean/Earth Literacy initiatives targeting policy makers and the public at large. (1)EC Digital Agenda

SemMat: Federated Semantic Services Platform for Open materials Science and Engineering

Science.gov (United States)

2017-01-01

SEMMAT: FEDERATED SEMANTIC SERVICES PLATFORM FOR OPEN MATERIALS SCIENCE AND ENGINEERING WRIGHT STATE UNIVERSITY JANUARY 2017 FINAL TECHNICAL...COVERED (From - To) JUL 2013 – JUN 2016 4. TITLE AND SUBTITLE SemMat: FEDERATED SEMANTIC SERVICES PLATFORM FOR OPEN MATERIALS SCIENCE AND ENGINEERING...models to represent materials data. This provides a data exchange scheme for materials science , which also includes provenance information to promote

LLNL Mercury Project Trinity Open Science Final Report

Energy Technology Data Exchange (ETDEWEB)

Dawson, Shawn A. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

2017-08-17

The Mercury Monte Carlo particle transport code is used to simulate the transport of radiation through urban environments. These challenging calculations include complicated geometries and require significant computational resources to complete. In the proposed Trinity Open Science calculations, I will investigate computer science aspects of the code which are relevant to convergence of the simulation quantities with increasing Monte Carlo particle counts.

Integrating Free and Open Source Solutions into Geospatial Science Education

Directory of Open Access Journals (Sweden)

Vaclav Petras

2015-06-01

Full Text Available While free and open source software becomes increasingly important in geospatial research and industry, open science perspectives are generally less reflected in universities’ educational programs. We present an example of how free and open source software can be incorporated into geospatial education to promote open and reproducible science. Since 2008 graduate students at North Carolina State University have the opportunity to take a course on geospatial modeling and analysis that is taught with both proprietary and free and open source software. In this course, students perform geospatial tasks simultaneously in the proprietary package ArcGIS and the free and open source package GRASS GIS. By ensuring that students learn to distinguish between geospatial concepts and software specifics, students become more flexible and stronger spatial thinkers when choosing solutions for their independent work in the future. We also discuss ways to continually update and improve our publicly available teaching materials for reuse by teachers, self-learners and other members of the GIS community. Only when free and open source software is fully integrated into geospatial education, we will be able to encourage a culture of openness and, thus, enable greater reproducibility in research and development applications.

Approaches to Open Data for Science in Spain

Directory of Open Access Journals (Sweden)

E Wulff-Barreiro

2011-10-01

Full Text Available As observational data has attained new legal status, allowing their integration into open Internet systems, and experimental data continues to be assembled in common and free platforms, state of the art, easy to access data repositories have been designed in Spain. These repositories have removed many obstacles to re-utilization of GIS and other data. European legislation has also made advances in opening biodiversity data, including a European space in the Latin-American grid infrastructure. Open access biomedical repositories attract commercial attention while astronomical, meteorological, and oncological institutions promote data quality and access. This paper describes recent approaches to open access data for science in Spain.

Catalyzing Open and Collaborative Science to Address Global ...

International Development Research Centre (IDRC) Digital Library (Canada)

Climate change, environmental degradation, emerging infectious diseases, ... Examples include crowdsourcing to map and monitor deforestation in Brazil to support conservation efforts in the Amazon. ... The costs and risks of open science

Enabling Campus Grids with Open Science Grid Technology

International Nuclear Information System (INIS)

Weitzel, Derek; Fraser, Dan; Pordes, Ruth; Bockelman, Brian; Swanson, David

2011-01-01

The Open Science Grid is a recognized key component of the US national cyber-infrastructure enabling scientific discovery through advanced high throughput computing. The principles and techniques that underlie the Open Science Grid can also be applied to Campus Grids since many of the requirements are the same, even if the implementation technologies differ. We find five requirements for a campus grid: trust relationships, job submission, resource independence, accounting, and data management. The Holland Computing Center's campus grid at the University of Nebraska-Lincoln was designed to fulfill the requirements of a campus grid. A bridging daemon was designed to bring non-Condor clusters into a grid managed by Condor. Condor features which make it possible to bridge Condor sites into a multi-campus grid have been exploited at the Holland Computing Center as well.

Earth observation open science and innovation

CERN Document Server

Aubrecht, Christoph

2018-01-01

This book is published open access under a CC BY 4.0 license. Over  the  past  decades,  rapid developments in digital and sensing technologies, such  as the Cloud, Web and Internet of Things, have dramatically changed the way we live and work. The digital transformation is revolutionizing our ability to monitor our planet and transforming the  way we access, process and exploit Earth Observation data from satellites. This book reviews these megatrends and their implications for the Earth Observation community as well as the wider data economy. It provides insight into new paradigms of Open Science and Innovation applied to space data, which are characterized by openness, access to large volume of complex data, wide availability of new community tools, new techniques for big data analytics such as Artificial Intelligence, unprecedented level of computing power, and new types of collaboration among researchers, innovators, entrepreneurs and citizen scientists. In addition, this book aims to provide reade...

The Tanenbaum Open Science Institute: Leading a Paradigm Shift at the Montreal Neurological Institute.

Science.gov (United States)

Poupon, Viviane; Seyller, Annabel; Rouleau, Guy A

2017-08-30

The Montreal Neurological Institute is adopting an Open Science Policy that will be enacted by the Tanenbaum Open Science Institute. The aim is to accelerate the generation of knowledge and novel effective treatments for brain disorders by freeing science. Copyright © 2017 Elsevier Inc. All rights reserved.

The South/Southeast Asia Research Initiative (SARI) Update and Meeting Objectives

Science.gov (United States)

Vadrevu, Krishna Prasad

2017-01-01

Land Use/Cover Change (LU/CC) is one of the most important types of environmental change in South and Southeast Asian countries. Several studies suggest that LU/CC in these countries is in large part driven by population growth and economic development. In the region, changes that are most common include urban expansion, agricultural land loss, land abandonment, deforestation, logging, reforestation, etc. To address the research needs and priorities in the region, a regional initiative entitled South Southeast Asia Regional Initiative (SARI) has been developed involving US and regional scientists. The initiative is funded by NASA Land Cover, Land Use Change program. The goal of SARI is to integrate state-of-the-art remote sensing, natural sciences, engineering and social sciences to enrich LU/CC science in South Southeast Asian countries. In the presentation, LU/CC change research in SARI countries will be highlighted including the drivers of change. For example, in South Asia, forest cover has been increasing in countries like India, Nepal and Bhutan due to sustainable afforestation measures; whereas, large-scale deforestation in Southeast Asian countries is still continuing, due to oil palm plantation expansion driven by the international market demand in Malaysia and Indonesia. With respect to urbanization, South and Southeast Asian countries contain 23 megacities, each with more than 10 million people. Rapid urbanization is driving agricultural land loss and agricultural intensification has been increasing due to less availability of land for growing food crops such as in India, Vietnam, and Thailand. The drivers of LUCC vary widely in the region and include such factors as land tenure, local economic development, government policies, inappropriate land management, land speculation, improved road networks, etc. In addition, variability in the weather, climate, and socioeconomic factors also drive LU/CC resulting in disruptions of biogeochemical cycles

Enabling campus grids with open science grid technology

Energy Technology Data Exchange (ETDEWEB)

Weitzel, Derek [Nebraska U.; Bockelman, Brian [Nebraska U.; Swanson, David [Nebraska U.; Fraser, Dan [Argonne; Pordes, Ruth [Fermilab

2011-01-01

The Open Science Grid is a recognized key component of the US national cyber-infrastructure enabling scientific discovery through advanced high throughput computing. The principles and techniques that underlie the Open Science Grid can also be applied to Campus Grids since many of the requirements are the same, even if the implementation technologies differ. We find five requirements for a campus grid: trust relationships, job submission, resource independence, accounting, and data management. The Holland Computing Center's campus grid at the University of Nebraska-Lincoln was designed to fulfill the requirements of a campus grid. A bridging daemon was designed to bring non-Condor clusters into a grid managed by Condor. Condor features which make it possible to bridge Condor sites into a multi-campus grid have been exploited at the Holland Computing Center as well.

Alchemy & algorithms: perspectives on the philosophy and history of open science

Directory of Open Access Journals (Sweden)

Leo Lahti

2017-05-01

Full Text Available This paper gives the reader a chance to experience, or revisit, PHOS16: a conference on the History and Philosophy of Open Science. In the winter of 2016, we invited a varied international group to engage with these topics at the University of Helsinki, Finland. Our aim was a critical assessment of the defining features, underlying narratives, and overall objectives of the contemporary open science movement. The event brought together contemporary open science scholars, publishers, and advocates to discuss the philosophical foundations and historical roots of openness in academic research. The eight sessions combined historical views with more contemporary perspectives on topics such as transparency, reproducibility, collaboration, publishing, peer review, research ethics, as well as societal impact and engagement. We gathered together expert panelists and 15 invited speakers who have published extensively on these topics, which allowed us to engage in a thorough and multifaceted discussion. Together with our involved audience we charted the role and foundations of openness of research in our time, considered the accumulation and dissemination of scientific knowledge, and debated the various technical, legal, and ethical challenges of the past and present. In this article, we provide an overview of the topics covered at the conference as well as individual video interviews with each speaker. In addition to this, all the talks were recorded and they are offered here as an openly licensed community resource in both video and audio form.

Open science initiatives: challenges for public health promotion.

Science.gov (United States)

Holzmeyer, Cheryl

2018-03-07

While academic open access, open data and open science initiatives have proliferated in recent years, facilitating new research resources for health promotion, open initiatives are not one-size-fits-all. Health research particularly illustrates how open initiatives may serve various interests and ends. Open initiatives not only foster new pathways of research access; they also discipline research in new ways, especially when associated with new regimes of research use and peer review, while participating in innovation ecosystems that often perpetuate existing systemic biases toward commercial biomedicine. Currently, many open initiatives are more oriented toward biomedical research paradigms than paradigms associated with public health promotion, such as social determinants of health research. Moreover, open initiatives too often dovetail with, rather than challenge, neoliberal policy paradigms. Such initiatives are unlikely to transform existing health research landscapes and redress health inequities. In this context, attunement to social determinants of health research and community-based local knowledge is vital to orient open initiatives toward public health promotion and health equity. Such an approach calls for discourses, norms and innovation ecosystems that contest neoliberal policy frameworks and foster upstream interventions to promote health, beyond biomedical paradigms. This analysis highlights challenges and possibilities for leveraging open initiatives on behalf of a wider range of health research stakeholders, while emphasizing public health promotion, health equity and social justice as benchmarks of transformation.

Open hardware for open science

CERN Multimedia

CERN Bulletin

2011-01-01

Inspired by the open source software movement, the Open Hardware Repository was created to enable hardware developers to share the results of their R&D activities. The recently published CERN Open Hardware Licence offers the legal framework to support this knowledge and technology exchange.   Two years ago, a group of electronics designers led by Javier Serrano, a CERN engineer, working in experimental physics laboratories created the Open Hardware Repository (OHR). This project was initiated in order to facilitate the exchange of hardware designs across the community in line with the ideals of “open science”. The main objectives include avoiding duplication of effort by sharing results across different teams that might be working on the same need. “For hardware developers, the advantages of open hardware are numerous. For example, it is a great learning tool for technologies some developers would not otherwise master, and it avoids unnecessary work if someone ha...

The Open Access Availability of Library and Information Science Literature

Science.gov (United States)

Way, Doug

2010-01-01

To examine the open access availability of Library and Information Science (LIS) research, a study was conducted using Google Scholar to search for articles from 20 top LIS journals. The study examined whether Google Scholar was able to find any links to full text, if open access versions of the articles were available and where these articles…

Open Data for Global Science

Directory of Open Access Journals (Sweden)

Paul F Uhlir

2007-06-01

Full Text Available he digital revolution has transformed the accumulation of properly curated public research data into an essential upstream resource whose value increases with use. The potential contributions of such data to the creation of new knowledge and downstream economic and social goods can in many cases be multiplied exponentially when the data are made openly available on digital networks. Most developed countries spend large amounts of public resources on research and related scientific facilities and instruments that generate massive amounts of data. Yet precious little of that investment is devoted to promoting the value of the resulting data by preserving and making them broadly available. The largely ad hoc approach to managing such data, however, is now beginning to be understood as inadequate to meet the exigencies of the national and international research enterprise. The time has thus come for the research community to establish explicit responsibilities for these digital resources. This article reviews the opportunities and challenges to the global science system associated with establishing an open data policy.

Perspectives on open science and scientific data sharing : An interdisciplinary workshop”

NARCIS (Netherlands)

Destro Bisol, G.; Anagnostou, P.; Capocasa, M.; Bencivelli, S.; Cerroni, A.; Contreras, J.; Enke, N.; Fantini, B.; Greco, P.; Heeney, C.; Luzi, D.; Manghi, P.; Mascalzoni, D.; Molloy, J.; Parenti, F.; Wicherts, J.M.; Boulton, G.

2014-01-01

Looking at Open Science and Open Data from a broad perspective. This is the idea behind “Scientific data sharing: an interdisciplinary workshop”, an initiative designed to foster dialogue between scholars from different scientific domains which was organized by the Istituto Italiano di Antropologia

Open Access Citation Advantage in selected Information Science journals: an extended analysis to altmetrics indicators

Directory of Open Access Journals (Sweden)

Paulo Roberto Cintra

2017-04-01

Full Text Available Introduction: Open access refers to scientific literature available free of charge and free of copyright restrictions and licensing for its reuse. An increase in the total number of citations received by articles available in open access in relation to those of restricted, pay-walled access is expected, according to the Open Access Citation Advantage hypothesis. Objective: Assess the possible citation advantages and mentions on the social web that open access can offer to the Information Science area. Methodology: Bibliometric and altmetric indicators were analyzed in two journals: Journal of the American Society for Information Science and Scientometrics. Data collection was conducted in the Web of Science, Google Scholar, Altmetric.com and Mendeley. Results: The results indicated that for both journals, open access offers an advantage in the number of citations received by articles. It was also demonstrated that the advantage is maintained over time. Conclusions: This research confirmed the hypothesis of an Open Access Citation Advantage for the journals analyzed in the area of Information Science. This pattern was also observed for the altmetric data.

Open-access databases as unprecedented resources and drivers of cultural change in fisheries science

Energy Technology Data Exchange (ETDEWEB)

McManamay, Ryan A [ORNL; Utz, Ryan [National Ecological Observatory Network

2014-01-01

Open-access databases with utility in fisheries science have grown exponentially in quantity and scope over the past decade, with profound impacts to our discipline. The management, distillation, and sharing of an exponentially growing stream of open-access data represents several fundamental challenges in fisheries science. Many of the currently available open-access resources may not be universally known among fisheries scientists. We therefore introduce many national- and global-scale open-access databases with applications in fisheries science and provide an example of how they can be harnessed to perform valuable analyses without additional field efforts. We also discuss how the development, maintenance, and utilization of open-access data are likely to pose technical, financial, and educational challenges to fisheries scientists. Such cultural implications that will coincide with the rapidly increasing availability of free data should compel the American Fisheries Society to actively address these problems now to help ease the forthcoming cultural transition.

Maintaining the momentum of Open Search in Earth Science Data discovery

Science.gov (United States)

Newman, D. J.; Lynnes, C.

2013-12-01

Federated Search for Earth Observation data has been a hallmark of EOSDIS (Earth Observing System Data and Information System) for two decades. Originally, the EOSDIS Version 0 system provided both data-collection-level and granule/file-level search in the mid 1990s with EOSDIS-specific socket protocols and message formats. Since that time, the advent of several standards has helped to simplify EOSDIS federated search, beginning with HTTP as the transfer protocol. Most recently, OpenSearch (www.opensearch.org) was employed for the EOS Clearinghouse (ECHO), based on a set of conventions that had been developed within the Earth Science Information Partners (ESIP) Federation. The ECHO OpenSearch API has evolved to encompass the ESIP RFC and the Open Geospatial Consortium (OGC) Open Search standard. Uptake of the ECHO Open Search API has been significant and has made ECHO accessible to client developers that found the previous ECHO SOAP API and current REST API too complex. Client adoption of the OpenSearch API appears to be largely driven by the simplicity of the OpenSearch convention. This simplicity is thus important to retain as the standard and convention evolve. For example, ECHO metrics indicate that the vast majority of ECHO users favor the following search criteria when using the REST API, - Spatial - bounding box, polygon, line and point - Temporal - start and end time - Keywords - free text Fewer than 10% of searches use additional constraints, particularly those requiring a controlled vocabulary, such as instrument, sensor, etc. This suggests that ongoing standardization efforts around OpenSearch usage for Earth Observation data may be more productive if oriented toward improving support for the Spatial, Temporal and Keyword search aspects. Areas still requiring improvement include support of - Concrete requirements for keyword constraints - Phrasal search for keyword constraints - Temporal constraint relations - Terminological symmetry between search URLs

Design and Implementation of a Library and Information Science Open Access Journal Union Catalogue System

Directory of Open Access Journals (Sweden)

Sinn-Cheng Lin

2017-03-01

Full Text Available Open access is a mode of academic communication that has been on the rise in recent years, but open access academic resources are widely dispersed across the internet, making it occasionally inconvenient in terms of its use. This research is focused on library and information science, using the OAIS reference model as the system framework, two open access platform, DOAJ and E-LIS as the data sources, and through system implementation develop a “library and information science open access journal union catalogue” system. Using the OAI-PMH protocol as the data interoperability standard, and LAMP as the development environment, four major functionalities: injest, archiving, management and access of information were designed, developed, and integrated into system build. Actual testing and verification showed this system is able to successfully collect data from DOAJ and E-LIS open journal resources related to library and information science. The system is now active and functional, and can be used by researchers in the library and science information field.

A Bibliometric Study of Scholarly Articles Published by Library and Information Science Authors about Open Access

Science.gov (United States)

Grandbois, Jennifer; Beheshti, Jamshid

2014-01-01

Introduction: This study aims to gain a greater understanding of the development of open access practices amongst library and information science authors, since their role is integral to the success of the broader open access movement. Method: Data were collected from scholarly articles about open access by library and information science authors…

On the evolving open peer review culture for chemical information science.

Science.gov (United States)

Walters, W Patrick; Bajorath, Jürgen

2015-01-01

Compared to the traditional anonymous peer review process, open post-publication peer review provides additional opportunities -and challenges- for reviewers to judge scientific studies. In this editorial, we comment on the open peer review culture and provide some guidance for reviewers of manuscripts submitted to the Chemical Information Science channel of F1000Research.

The Open Science Grid

Energy Technology Data Exchange (ETDEWEB)

Pordes, Ruth; /Fermilab; Kramer, Bill; Olson, Doug; / /LBL, Berkeley; Livny, Miron; Roy, Alain; /Wisconsin U., Madison; Avery, Paul; /Florida U.; Blackburn, Kent; /Caltech; Wenaus, Torre; /Brookhaven; Wurthwein, Frank; /UC, San Diego; Gardner, Rob; Wilde, Mike; /Chicago U. /Indiana U.

2007-06-01

The Open Science Grid (OSG) provides a distributed facility where the Consortium members provide guaranteed and opportunistic access to shared computing and storage resources. OSG provides support for and evolution of the infrastructure through activities that cover operations, security, software, troubleshooting, addition of new capabilities, and support for existing and engagement with new communities. The OSG SciDAC-2 project provides specific activities to manage and evolve the distributed infrastructure and support its use. The innovative aspects of the project are the maintenance and performance of a collaborative (shared & common) petascale national facility over tens of autonomous computing sites, for many hundreds of users, transferring terabytes of data a day, executing tens of thousands of jobs a day, and providing robust and usable resources for scientific groups of all types and sizes. More information can be found at the OSG web site: www.opensciencegrid.org.

Authentic school science knowing and learning in open-inquiry science laboratories

CERN Document Server

Roth, Wolff-Michael

1995-01-01

According to John Dewey, Seymour Papert, Donald Schon, and Allan Collins, school activities, to be authentic, need to share key features with those worlds about which they teach. This book documents learning and teaching in open-inquiry learning environments, designed with the precepts of these educational thinkers in mind. The book is thus a first-hand report of knowing and learning by individuals and groups in complex open-inquiry learning environments in science. As such, it contributes to the emerging literature in this field. Secondly, it exemplifies research methods for studying such complex learning environments. The reader is thus encouraged not only to take the research findings as such, but to reflect on the process of arriving at these findings. Finally, the book is also an example of knowledge constructed by a teacher-researcher, and thus a model for teacher-researcher activity.

Successful Massive Open Online Climate Course on Climate Science and Psychology

Science.gov (United States)

Nuccitelli, D. A.; Cook, J.

2015-12-01

In 2015, the University of Queensland and edX launched a Massive Open Online Course (MOOC), 'Making Sense of Climate Science Denial.' The MOOC debunked approximately 50 common climate myths using elements of both physical science and psychology. Students learned how to recognise the social and psychological drivers of climate science denial, how to better understand climate change, how to identify the techniques and fallacies that climate myths employ to distort climate science, and how to effectively debunk climate misinformation. Contributors to the website Skeptical Science delivered the lectures, which were reinforced via interviews with climate science and psychology experts. Over 15,000 students from 167 countries enrolled in the course, and student feedback was overwhelmingly positive. This MOOC provides a model for effective climate science education.

Evolution of Nursing Science: Is Open Access the Answer?

Science.gov (United States)

Clarke, Pamela N; Garcia, Jenny

2015-10-01

The open access movement where journal content is made freely available over the Internet is purported to increase scientific exchange, yet has pros and cons. There are issues related to quality that need to be examined in relation to evolution of nursing science. © The Author(s) 2015.

Helix Nebula Science Cloud pilot phase open session

CERN Multimedia

CERN. Geneva

2018-01-01

This Helix Nebula Science Cloud (HNSciCloud) public session is open to everyone and will be webcast. The session will provide the audience with an overview of the HNSciCloud pre-commercial procurement project and the innovative cloud platforms that have been developed. A number of practical use-cases from the physics community will be presented as well as the next steps to be undertaken.

ROSA P : The National Transportation Library’s Repository and Open Science Access Portal

Science.gov (United States)

2018-01-01

The National Transportation Library (NTL) was founded as an all-digital repository of US DOT research reports, technical publications and data products. NTLs primary public offering is ROSA P, the Repository and Open Science Access Portal. An open...

Virtual Labs (Science Gateways) as platforms for Free and Open Source Science

Science.gov (United States)

Lescinsky, David; Car, Nicholas; Fraser, Ryan; Friedrich, Carsten; Kemp, Carina; Squire, Geoffrey

2016-04-01

The Free and Open Source Software (FOSS) movement promotes community engagement in software development, as well as provides access to a range of sophisticated technologies that would be prohibitively expensive if obtained commercially. However, as geoinformatics and eResearch tools and services become more dispersed, it becomes more complicated to identify and interface between the many required components. Virtual Laboratories (VLs, also known as Science Gateways) simplify the management and coordination of these components by providing a platform linking many, if not all, of the steps in particular scientific processes. These enable scientists to focus on their science, rather than the underlying supporting technologies. We describe a modular, open source, VL infrastructure that can be reconfigured to create VLs for a wide range of disciplines. Development of this infrastructure has been led by CSIRO in collaboration with Geoscience Australia and the National Computational Infrastructure (NCI) with support from the National eResearch Collaboration Tools and Resources (NeCTAR) and the Australian National Data Service (ANDS). Initially, the infrastructure was developed to support the Virtual Geophysical Laboratory (VGL), and has subsequently been repurposed to create the Virtual Hazards Impact and Risk Laboratory (VHIRL) and the reconfigured Australian National Virtual Geophysics Laboratory (ANVGL). During each step of development, new capabilities and services have been added and/or enhanced. We plan on continuing to follow this model using a shared, community code base. The VL platform facilitates transparent and reproducible science by providing access to both the data and methodologies used during scientific investigations. This is further enhanced by the ability to set up and run investigations using computational resources accessed through the VL. Data is accessed using registries pointing to catalogues within public data repositories (notably including the

Open science: policy implications for the evolving phenomenon of user-led scientific innovation

Directory of Open Access Journals (Sweden)

Victoria Stodden

2010-03-01

Full Text Available From contributions of astronomy data and DNA sequences to disease treatment research, scientific activity by non-scientists is a real and emergent phenomenon, and raising policy questions. This involvement in science can be understood as an issue of access to publications, code, and data that facilitates public engagement in the research process, thus appropriate policy to support the associated welfare enhancing benefits is essential. Current legal barriers to citizen participation can be alleviated by scientists’ use of the “Reproducible Research Standard,” thus making the literature, data, and code associated with scientific results accessible. The enterprise of science is undergoing deep and fundamental changes, particularly in how scientists obtain results and share their work: the promise of open research dissemination held by the Internet is gradually being fulfilled by scientists. Contributions to science from beyond the ivory tower are forcing a rethinking of traditional models of knowledge generation, evaluation, and communication. The notion of a scientific “peer” is blurred with the advent of lay contributions to science raising questions regarding the concepts of peer-review and recognition. New collaborative models are emerging around both open scientific software and the generation of scientific discoveries that bear a similarity to open innovation models in other settings. Public engagement in science can be understood as an issue of access to knowledge for public involvement in the research process, facilitated by appropriate policy to support the welfare enhancing benefits deriving from citizen-science.

Making USGS Science Data more Open, Accessible, and Usable: Leveraging ScienceBase for Success

Science.gov (United States)

Chang, M.; Ignizio, D.; Langseth, M. L.; Norkin, T.

2016-12-01

In 2013, the White House released initiatives requiring federally funded research to be made publicly available and machine readable. In response, the U.S. Geological Survey (USGS) has been developing a unified approach to make USGS data available and open. This effort has involved the establishment of internal policies and the release of a Public Access Plan, which outlines a strategy for the USGS to move forward into the modern era in scientific data management. Originally designed as a catalog and collaborative data management platform, ScienceBase (www.sciencebase.gov) is being leveraged to serve as a robust data hosting solution for USGS researchers to make scientific data accessible. With the goal of maintaining persistent access to formal data products and developing a management approach to facilitate stable data citation, the ScienceBase Data Release Team was established to ensure the quality, consistency, and meaningful organization of USGS data through standardized workflows and best practices. These practices include the creation and maintenance of persistent identifiers for data, improving the use of open data formats, establishing permissions for read/write access, validating the quality of standards compliant metadata, verifying that data have been reviewed and approved prior to release, and connecting to external search catalogs such as the USGS Science Data Catalog (data.usgs.gov) and data.gov. The ScienceBase team is actively building features to support this effort by automating steps to streamline the process, building metrics to track site visits and downloads, and connecting published digital resources in line with USGS and Federal policy. By utilizing ScienceBase to achieve stewardship quality and employing a dedicated team to help USGS scientists improve the quality of their data, the USGS is helping to meet today's data quality management challenges and ensure that reliable USGS data are available to and reusable for the public.

76 FR 60564 - President's Council of Advisors on Science and Technology; Notice of Meeting: Open Regional...

Science.gov (United States)

2011-09-29

... development. Facility and infrastructure sharing. Policies that could create a fertile innovation environment...; Notice of Meeting: Open Regional Meeting of the President's Council of Advisors on Science and Technology... schedule and summary agenda for an open regional meeting of the President's Council of Advisors on Science...

Documentation in Otolaryngology. Sharing Otolaryngology research data in an open science ecosyste

Directory of Open Access Journals (Sweden)

Fernanda PESET

2018-01-01

Full Text Available Introduction and objective: The present text addresses the most significant aspects to share research data in otolaryngology in the context of open science as an ecosystem. Its aim is to offer a panoramic view that helps the researcher to manage their data as part of enriched science. Method: A bibliographical review and of the own experience in the field of the investigation data was performed. Results: The basic pillars for success are offered: its political, technical and necessary capacities. Discussion: The tasks of making data available should be recognized as part of the researcher's curriculum because documenting them to be reusable is a highly specialized and time-consuming task. Conclusions: It is considered that we are at a crucial moment to begin to share data. It is being considered in all scientific policy scenarios as in the EU through the European Open Science Computing.

Open Science Strategies in Research Policies: A Comparative Exploration of Canada, the US and the UK

Science.gov (United States)

Lasthiotakis, Helen; Kretz, Andrew; Sá, Creso

2015-01-01

Several movements have emerged related to the general idea of promoting "openness" in science. Research councils are key institutions in bringing about changes proposed by these movements, as sponsors and facilitators of research. In this paper we identify the approaches used in Canada, the US and the UK to advance open science, as a…

The Open Science Grid status and architecture

Energy Technology Data Exchange (ETDEWEB)

Pordes, Ruth; Petravick, Don; /Fermilab; Kramer, Bill; Olsen, James D.; /LBL, Berkeley; Livny, Miron; Roy, Gordon A.; /Wisconsin U., Madison; Avery, Paul Ralph; /Florida U.; Blackburn, Kent; /Caltech; Wenaus, Torre J.; /Brookhaven; Wuerthwein, Frank K.; /UC, San Diego; Foster, Ian; /Chicago U. /Indiana U.

2007-09-01

The Open Science Grid (OSG) provides a distributed facility where the Consortium members provide guaranteed and opportunistic access to shared computing and storage resources. The OSG project[1] is funded by the National Science Foundation and the Department of Energy Scientific Discovery through Advanced Computing program. The OSG project provides specific activities for the operation and evolution of the common infrastructure. The US ATLAS and US CMS collaborations contribute to and depend on OSG as the US infrastructure contributing to the World Wide LHC Computing Grid on which the LHC experiments distribute and analyze their data. Other stakeholders include the STAR RHIC experiment, the Laser Interferometer Gravitational-Wave Observatory (LIGO), the Dark Energy Survey (DES) and several Fermilab Tevatron experiments- CDF, D0, MiniBoone etc. The OSG implementation architecture brings a pragmatic approach to enabling vertically integrated community specific distributed systems over a common horizontal set of shared resources and services. More information can be found at the OSG web site: www.opensciencegrid.org.

The Open Science Grid status and architecture

International Nuclear Information System (INIS)

Pordes, R; Petravick, D; Kramer, B; Olson, D; Livny, M; Roy, A; Avery, P; Blackburn, K; Wenaus, T; Wuerthwein, F; Foster, I; Gardner, R; Wilde, M; Blatecky, A; McGee, J; Quick, R

2008-01-01

The Open Science Grid (OSG) provides a distributed facility where the Consortium members provide guaranteed and opportunistic access to shared computing and storage resources. The OSG project[1] is funded by the National Science Foundation and the Department of Energy Scientific Discovery through Advanced Computing program. The OSG project provides specific activities for the operation and evolution of the common infrastructure. The US ATLAS and US CMS collaborations contribute to and depend on OSG as the US infrastructure contributing to the World Wide LHC Computing Grid on which the LHC experiments distribute and analyze their data. Other stakeholders include the STAR RHIC experiment, the Laser Interferometer Gravitational-Wave Observatory (LIGO), the Dark Energy Survey (DES) and several Fermilab Tevatron experiments- CDF, D0, MiniBoone etc. The OSG implementation architecture brings a pragmatic approach to enabling vertically integrated community specific distributed systems over a common horizontal set of shared resources and services. More information can be found at the OSG web site: www.opensciencegrid.org

Analysis of hydrological response to land use changes based on Low Impact Development—a case study on the southern area of Fangshan National Geopark in Nanjing city, China

Science.gov (United States)

Wang, Y.; Fu, D., Sr.

2016-12-01

The hydrological response to Land Use/Land Cover Changes (LUCC) is the most active field in the international hydrological science research, and it is also a particular concern in the process of Chinese urban construction and renewal, many studies have shown that large-scale land use change is an important factor leading to the regional climate and hydrological cycle changes. Therefore, International Geosphere-Biosphere Program (IGBP) and International Human Dimensions Programme on Global Environmental Change (IHDP), World Climate Research Program (WCRP) and International Programme of Biodiversity Science (DIVERSITAS) program take land use change as one core program. The change of regional vegetation ecosystem caused by land use change, in turn, has a very significant impact on the regional hydrological cycle. Currently the influence of hydrological processes attributed correlated with land-use type were not fully considered in urban LUCC, the hydrological effect on urban-scale LUCC has just started. Since 2015, Chinese government began to implement "Sponge City" construction, however, the sponge city construction often takes the water resources management as the target, and mainly focuses on the rational allocation of urban water resources in conjunction with ignoring the response of LUCC on the water system. The hydrological response on LUCC need to use the scenario design method to quantitatively analyze the influence degree of the hydrological change on LUCC. According to the control rate of the runoff volume and land information, the coverage rate of sponge facilities determined before planning, such as bioretention, permeable pavement and greening roof, are adjusted and then are checked on the basis of storage volume, the coverage rate of the sponge facilities that can accommodate the total runoff volume are put forward. This research addresses the hydrological response changes on the land use before and after the use of LID using the scenario design method

The Role of Semantics in Open-World, Integrative, Collaborative Science Data Platforms

Science.gov (United States)

Fox, Peter; Chen, Yanning; Wang, Han; West, Patrick; Erickson, John; Ma, Marshall

2014-05-01

As collaborative science spreads into more and more Earth and space science fields, both participants and funders are expressing stronger needs for highly functional data and information capabilities. Characteristics include a) easy to use, b) highly integrated, c) leverage investments, d) accommodate rapid technical change, and e) do not incur undue expense or time to build or maintain - these are not a small set of requirements. Based on our accumulated experience over the last ~ decade and several key technical approaches, we adapt, extend, and integrate several open source applications and frameworks to handle major portions of functionality for these platforms. This includes: an object-type repository, collaboration tools, identity management, all within a portal managing diverse content and applications. In this contribution, we present our methods and results of information models, adaptation, integration and evolution of a networked data science architecture based on several open source technologies (Drupal, VIVO, the Comprehensive Knowledge Archive Network; CKAN, and the Global Handle System; GHS). In particular we present the Deep Carbon Observatory - a platform for international science collaboration. We present and discuss key functional and non-functional attributes, and discuss the general applicability of the platform.

Trinity Phase 2 Open Science: CTH

Energy Technology Data Exchange (ETDEWEB)

Ruggirello, Kevin Patrick [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Vogler, Tracy [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

2017-08-01

CTH is an Eulerian hydrocode developed by Sandia National Laboratories (SNL) to solve a wide range of shock wave propagation and material deformation problems. Adaptive mesh refinement is also used to improve efficiency for problems with a wide range of spatial scales. The code has a history of running on a variety of computing platforms ranging from desktops to massively parallel distributed-data systems. For the Trinity Phase 2 Open Science campaign, CTH was used to study mesoscale simulations of the hypervelocity penetration of granular SiC powders. The simulations were compared to experimental data. A scaling study of CTH up to 8192 KNL nodes was also performed, and several improvements were made to the code to improve the scalability.

Open access publishing in the biomedical sciences: could funding agencies accelerate the inevitable changes?

Science.gov (United States)

Glover, Steven William; Webb, Anne; Gleghorn, Colette

2006-09-01

Open access is making a noticeable impact on access to information. In 2005, many major research funders, including the Wellcome Trust, National Institutes for Health (NIH), and the Research Councils UK (RCUK), set out their position in a number of statements. Of particular note was the stipulation that authors receiving grants must deposit their final manuscript in an open access forum within 6-12 months of publication. The paper will look at the open access position statements issued by some of the major funding bodies in the biomedical sciences. The paper will also look at the models used by publishers to provide open or delayed access, such as Oxford Open from Oxford University Press, HighWire Press' delayed access policy, BioMed Central, and Public Library of Science (PLoS). There are now over 1.2 million articles in PubMed that are freely accessible via publishers' websites.(1) Could funding agencies accelerate the move to open access? The list of funding agencies supporting open access is growing. The National Institutes for Health and the Wellcome Trust have been joined by many of the world's major funders in biomedical research whose goal it is to make their research findings available with no barriers.

Free and Open Source Software for Geospatial in the field of planetary science

Science.gov (United States)

Frigeri, A.

2012-12-01

Information technology applied to geospatial analyses has spread quickly in the last ten years. The availability of OpenData and data from collaborative mapping projects increased the interest on tools, procedures and methods to handle spatially-related information. Free Open Source Software projects devoted to geospatial data handling are gaining a good success as the use of interoperable formats and protocols allow the user to choose what pipeline of tools and libraries is needed to solve a particular task, adapting the software scene to his specific problem. In particular, the Free Open Source model of development mimics the scientific method very well, and researchers should be naturally encouraged to take part to the development process of these software projects, as this represent a very agile way to interact among several institutions. When it comes to planetary sciences, geospatial Free Open Source Software is gaining a key role in projects that commonly involve different subjects in an international scenario. Very popular software suites for processing scientific mission data (for example, ISIS) and for navigation/planning (SPICE) are being distributed along with the source code and the interaction between user and developer is often very strict, creating a continuum between these two figures. A very widely spread library for handling geospatial data (GDAL) has started to support planetary data from the Planetary Data System, and recent contributions enabled the support to other popular data formats used in planetary science, as the Vicar one. The use of Geographic Information System in planetary science is now diffused, and Free Open Source GIS, open GIS formats and network protocols allow to extend existing tools and methods developed to solve Earth based problems, also to the case of the study of solar system bodies. A day in the working life of a researcher using Free Open Source Software for geospatial will be presented, as well as benefits and

The EPOS Vision for the Open Science Cloud

Science.gov (United States)

Jeffery, Keith; Harrison, Matt; Cocco, Massimo

2016-04-01

Cloud computing offers dynamic elastic scalability for data processing on demand. For much research activity, demand for computing is uneven over time and so CLOUD computing offers both cost-effectiveness and capacity advantages. However, as reported repeatedly by the EC Cloud Expert Group, there are barriers to the uptake of Cloud Computing: (1) security and privacy; (2) interoperability (avoidance of lock-in); (3) lack of appropriate systems development environments for application programmers to characterise their applications to allow CLOUD middleware to optimize their deployment and execution. From CERN, the Helix-Nebula group has proposed the architecture for the European Open Science Cloud. They are discussing with other e-Infrastructure groups such as EGI (GRIDs), EUDAT (data curation), AARC (network authentication and authorisation) and also with the EIROFORUM group of 'international treaty' RIs (Research Infrastructures) and the ESFRI (European Strategic Forum for Research Infrastructures) RIs including EPOS. Many of these RIs are either e-RIs (electronic-RIs) or have an e-RI interface for access and use. The EPOS architecture is centred on a portal: ICS (Integrated Core Services). The architectural design already allows for access to e-RIs (which may include any or all of data, software, users and resources such as computers or instruments). Those within any one domain (subject area) of EPOS are considered within the TCS (Thematic Core Services). Those outside, or available across multiple domains of EPOS, are ICS-d (Integrated Core Services-Distributed) since the intention is that they will be used by any or all of the TCS via the ICS. Another such service type is CES (Computational Earth Science); effectively an ICS-d specializing in high performance computation, analytics, simulation or visualization offered by a TCS for others to use. Already discussions are underway between EPOS and EGI, EUDAT, AARC and Helix-Nebula for those offerings to be

Afraid of Scooping – Case Study on Researcher Strategies against Fear of Scooping in the Context of Open Science

Directory of Open Access Journals (Sweden)

Heidi Laine

2017-06-01

Full Text Available The risk of scooping is often used as a counter argument for open science, especially open data. In this case study I have examined openness strategies, practices and attitudes in two open collaboration research projects created by Finnish researchers, in order to understand what made them resistant to the fear of scooping. The radically open approach of the projects includes open by default funding proposals, co-authorship and community membership. Primary sources used are interviews of the projects’ founding members. The analysis indicates that openness requires trust in close peers, but not necessarily in research community or society at large. Based on the case study evidence, focusing on intrinsic goals, like new knowledge and bringing about ethical reform, instead of external goals such as publications, supports openness. Understanding fundaments of science, philosophy of science and research ethics, can also have a beneficial effect on willingness to share. Whether there are aspects in open sharing that makes it seem riskier from the point of view of certain demographical groups within research community, such as women, could be worth closer inspection.

Interdisciplinary research center devoted to molecular environmental science opens

Science.gov (United States)

Vaughan, David J.

In October, a new research center opened at the University of Manchester in the United Kingdom. The center is the product of over a decade of ground-breaking interdisciplinary research in the Earth and related biological and chemical sciences at the university The center also responds to the British governments policy of investing in research infrastructure at key universities.The Williamson Research Centre, the first of its kind in Britain and among the first worldwide, is devoted to the emerging field of molecular environmental science. This field also aims to bring about a revolution in understanding of our environment. Though it may be a less violent revolution than some, perhaps, its potential is high for developments that could affect us all.

An open science peer review oath

DEFF Research Database (Denmark)

Aleksic, Jelena; Adrian Alexa, Adrian Alexa; Attwood, Teresa K.

2015-01-01

One of the foundations of the scientific method is to be able to reproduce experiments and corroborate the results of research that has been done before. However, with the increasing complexities of new technologies and techniques, coupled with the specialisation of experiments, reproducing......: specifically, we introduce a peer-review oath and accompanying manifesto. These have been designed to offer guidelines to enable reviewers (with the minimum friction or bias) to follow and apply open science principles, and support the ideas of transparency, reproducibility and ultimately greater societal...... research findings has become a growing challenge. Clearly, scientific methods must be conveyed succinctly, and with clarity and rigour, in order for research to be reproducible. Here, we propose steps to help increase the transparency of the scientific method and the reproducibility of research results...

Open access behaviours and perceptions of health sciences faculty and roles of information professionals.

Science.gov (United States)

Lwoga, Edda T; Questier, Frederik

2015-03-01

This study sought to investigate the faculty's awareness, attitudes and use of open access, and the role of information professionals in supporting open access (OA) scholarly communication in Tanzanian health sciences universities. A cross-sectional survey was conducted. Semi-structured interviews were conducted with 16 librarians, while questionnaires were physically distributed to 415 faculty members in all eight Tanzanian health sciences universities, with a response rate of 71.1%. The study found that most faculty members were aware about OA issues. However, the high level of OA awareness among faculty members did not translate into actual dissemination of faculty's research outputs through OA web avenues. A small proportion of faculty's research materials was made available as OA. Faculty were more engaged with OA journal publishing than with self-archiving practices. Senior faculty with proficient technical skills were more likely to use open access than junior faculty. Major barriers to OA usage were related to ICT infrastructure, awareness, skills, author-pay model, and copyright and plagiarism concerns. Interviews with librarians revealed that there was a strong support for promoting OA issues on campus; however, this positive support with various open access-related tasks did not translate into actual action. It is thus important for librarians and OA administrators to consider all these factors for effective implementation of OA projects in research and academic institutions. This is the first comprehensive and detailed study focusing on the health sciences faculty's and librarians' behaviours and perceptions of open access initiatives in Tanzania and reveals findings that are useful for planning and implementing open access initiatives in other institutions with similar conditions. © 2015 Health Libraries Journal.

Challenges of Virtual and Open Distance Science Teacher Education in Zimbabwe

Directory of Open Access Journals (Sweden)

Vongai Mpofu

2012-01-01

Full Text Available This paper reports on a study of the implementation of science teacher education through virtual and open distance learning in the Mashonaland Central Province, Zimbabwe. The study provides insight into challenges faced by students and lecturers on inception of the program at four centres. Data was collected from completed evaluation survey forms of forty-two lecturers who were directly involved at the launch of the program and in-depth interviews. Qualitative data analysis revealed that the programme faces potential threat from centre-, institution-, lecturer-, and student-related factors. These include limited resources, large classes, inadequate expertise in open and distance education, inappropriate science teacher education qualifications, implementer conflict of interest in program participation, students’ low self-esteem, lack of awareness of quality parameters of delivery systems among staff, and lack of standard criteria to measure the quality of services. The paper recommends that issues raised be addressed in order to produce quality teachers.

Book Review: Opening Science, the Evolving Guide on How the Internet is Changing Research, Collaboration, and Scholarly Publishing

Science.gov (United States)

The way we get our funding, collaborate, do our research, and get the word out has evolved over hundreds of years but we can imagine a more open science world, largely facilitated by the internet. The movement towards this more open way of doing and presenting science is coming, ...

Harnessing the Use of Open Learning Exchange to Support Basic Education in Science and Mathematics in the Philippines

Science.gov (United States)

Feliciano, Josephine S.; Mandapat, Louie Carl R.; Khan, Concepcion L.

2013-01-01

This paper presents the open learning initiatives of the Science Education Institute of the Department of Science and Technology to overcome certain barriers, such as enabling access, cost of replication, timely feedback, monitoring and continuous improvement of learning modules. Using an open-education model, like MIT's (Massachusetts Institute…

Enabling a new Paradigm to Address Big Data and Open Science Challenges

Science.gov (United States)

Ramamurthy, Mohan; Fisher, Ward

2017-04-01

Data are not only the lifeblood of the geosciences but they have become the currency of the modern world in science and society. Rapid advances in computing, communi¬cations, and observational technologies — along with concomitant advances in high-resolution modeling, ensemble and coupled-systems predictions of the Earth system — are revolutionizing nearly every aspect of our field. Modern data volumes from high-resolution ensemble prediction/projection/simulation systems and next-generation remote-sensing systems like hyper-spectral satellite sensors and phased-array radars are staggering. For example, CMIP efforts alone will generate many petabytes of climate projection data for use in assessments of climate change. And NOAA's National Climatic Data Center projects that it will archive over 350 petabytes by 2030. For researchers and educators, this deluge and the increasing complexity of data brings challenges along with the opportunities for discovery and scientific breakthroughs. The potential for big data to transform the geosciences is enormous, but realizing the next frontier depends on effectively managing, analyzing, and exploiting these heterogeneous data sources, extracting knowledge and useful information from heterogeneous data sources in ways that were previously impossible, to enable discoveries and gain new insights. At the same time, there is a growing focus on the area of "Reproducibility or Replicability in Science" that has implications for Open Science. The advent of cloud computing has opened new avenues for not only addressing both big data and Open Science challenges to accelerate scientific discoveries. However, to successfully leverage the enormous potential of cloud technologies, it will require the data providers and the scientific communities to develop new paradigms to enable next-generation workflows and transform the conduct of science. Making data readily available is a necessary but not a sufficient condition. Data providers

Sustaining and Extending the Open Science Grid: Science Innovation on a PetaScale Nationwide Facility (DE-FC02-06ER41436) SciDAC-2 Closeout Report

Energy Technology Data Exchange (ETDEWEB)

Livny, Miron [Univ. of Wisconsin, Madison, WI (United States); Shank, James [Boston Univ., MA (United States); Ernst, Michael [Brookhaven National Lab. (BNL), Upton, NY (United States); Blackburn, Kent [California Inst. of Technology (CalTech), Pasadena, CA (United States); Goasguen, Sebastien [Clemson Univ., SC (United States); Tuts, Michael [Columbia Univ., New York, NY (United States); Gibbons, Lawrence [Cornell Univ., Ithaca, NY (United States); Pordes, Ruth [Fermi National Accelerator Lab. (FNAL), Batavia, IL (United States); Sliz, Piotr [Harvard Medical School, Boston, MA (United States); Deelman, Ewa [Univ. of Southern California, Los Angeles, CA (United States). Information Sciences Inst.; Barnett, William [Indiana Univ., Bloomington, IN (United States); Olson, Doug [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); McGee, John [Univ. of North Carolina, Chapel Hill, NC (United States). Renaissance Computing Inst.; Cowles, Robert [SLAC National Accelerator Lab., Menlo Park, CA (United States); Wuerthwein, Frank [Univ. of California, San Diego, CA (United States); Gardner, Robert [Univ. of Chicago, IL (United States); Avery, Paul [Univ. of Florida, Gainesville, FL (United States); Wang, Shaowen [Univ. of Illinois, Champaign, IL (United States); Univ. of Iowa, Iowa City, IA (United States); Lincoln, David Swanson [Univ. of Nebraska, Lincoln, NE (United States)

2015-02-11

Under this SciDAC-2 grant the project’s goal w a s t o stimulate new discoveries by providing scientists with effective and dependable access to an unprecedented national distributed computational facility: the Open Science Grid (OSG). We proposed to achieve this through the work of the Open Science Grid Consortium: a unique hands-on multi-disciplinary collaboration of scientists, software developers and providers of computing resources. Together the stakeholders in this consortium sustain and use a shared distributed computing environment that transforms simulation and experimental science in the US. The OSG consortium is an open collaboration that actively engages new research communities. We operate an open facility that brings together a broad spectrum of compute, storage, and networking resources and interfaces to other cyberinfrastructures, including the US XSEDE (previously TeraGrid), the European Grids for ESciencE (EGEE), as well as campus and regional grids. We leverage middleware provided by computer science groups, facility IT support organizations, and computing programs of application communities for the benefit of consortium members and the US national CI.

Impact of problem finding on the quality of authentic open inquiry science research projects

Science.gov (United States)

Labanca, Frank

2008-11-01

Problem finding is a creative process whereby individuals develop original ideas for study. Secondary science students who successfully participate in authentic, novel, open inquiry studies must engage in problem finding to determine viable and suitable topics. This study examined problem finding strategies employed by students who successfully completed and presented the results of their open inquiry research at the 2007 Connecticut Science Fair and the 2007 International Science and Engineering Fair. A multicase qualitative study was framed through the lenses of creativity, inquiry strategies, and situated cognition learning theory. Data were triangulated by methods (interviews, document analysis, surveys) and sources (students, teachers, mentors, fair directors, documents). The data demonstrated that the quality of student projects was directly impacted by the quality of their problem finding. Effective problem finding was a result of students using resources from previous, specialized experiences. They had a positive self-concept and a temperament for both the creative and logical perspectives of science research. Successful problem finding was derived from an idiosyncratic, nonlinear, and flexible use and understanding of inquiry. Finally, problem finding was influenced and assisted by the community of practicing scientists, with whom the students had an exceptional ability to communicate effectively. As a result, there appears to be a juxtaposition of creative and logical/analytical thought for open inquiry that may not be present in other forms of inquiry. Instructional strategies are suggested for teachers of science research students to improve the quality of problem finding for their students and their subsequent research projects.

OPEN INNOVATION PROJECT: THE SYSTEM OF ONLINE INDICATORS IN SCIENCE, TECHNOLOGY AND INNOVATION OF AMAZONAS (SiON

Directory of Open Access Journals (Sweden)

Moises Andrade Coelho

2016-05-01

Full Text Available This study aims to evaluate the implementation of an open innovation project in a public institution in the state of Amazonas. The theoretical and empirical background deals with science, technology and innovation indicators and open innovation. The study is characterized as a qualitative and descriptive research, with the case study as a methodological procedure. The delimitation of the universe was composed by a public institution in the area of science, technology and innovation (ST&I. In the case study, it was used an approach as tool to assess the implementation of open innovation projects. The results are shown several stages of open innovation project analyzed.  The study demonstrates the implications of open innovation project adoption to the strengthening of external networks and the maturing of the internal environment. The relevance of the study is based on the evaluation of an open innovation project in a public institution in order to foster the transition from traditional innovation processes to open innovation processes.

Enabling Open Science for Health Research: Collaborative Informatics Environment for Learning on Health Outcomes (CIELO).

Science.gov (United States)

Payne, Philip; Lele, Omkar; Johnson, Beth; Holve, Erin

2017-07-31

There is an emergent and intensive dialogue in the United States with regard to the accessibility, reproducibility, and rigor of health research. This discussion is also closely aligned with the need to identify sustainable ways to expand the national research enterprise and to generate actionable results that can be applied to improve the nation's health. The principles and practices of Open Science offer a promising path to address both goals by facilitating (1) increased transparency of data and methods, which promotes research reproducibility and rigor; and (2) cumulative efficiencies wherein research tools and the output of research are combined to accelerate the delivery of new knowledge in proximal domains, thereby resulting in greater productivity and a reduction in redundant research investments. AcademyHealth's Electronic Data Methods (EDM) Forum implemented a proof-of-concept open science platform for health research called the Collaborative Informatics Environment for Learning on Health Outcomes (CIELO). The EDM Forum conducted a user-centered design process to elucidate important and high-level requirements for creating and sustaining an open science paradigm. By implementing CIELO and engaging a variety of potential users in its public beta testing, the EDM Forum has been able to elucidate a broad range of stakeholder needs and requirements related to the use of an open science platform focused on health research in a variety of "real world" settings. Our initial design and development experience over the course of the CIELO project has provided the basis for a vigorous dialogue between stakeholder community members regarding the capabilities that will add the greatest value to an open science platform for the health research community. A number of important questions around user incentives, sustainability, and scalability will require further community dialogue and agreement. ©Philip Payne, Omkar Lele, Beth Johnson, Erin Holve. Originally published

Open Access to Scientific Data: Promoting Science and Innovation

Directory of Open Access Journals (Sweden)

Guan-Hua Xu

2007-06-01

Full Text Available As an important part of the science and technology infrastructure platform of China, the Ministry of Science and Technology launched the Scientific Data Sharing Program in 2002. Twenty-four government agencies now participate in the Program. After five years of hard work, great progress has been achieved in the policy and legal framework, data standards, pilot projects, and international cooperation. By the end of 2005, one-third of the existing public-interest and basic scientific databases in China had been integrated and upgraded. By 2020, China is expected to build a more user-friendly scientific data management and sharing system, with 80 percent of scientific data available to the general public. In order to realize this objective, the emphases of the project are to perfect the policy and legislation system, improve the quality of data resources, expand and establish national scientific data centers, and strengthen international cooperation. It is believed that with the opening up of access to scientific data in China, the Program will play a bigger role in promoting science and national innovation.

Challenges of Virtual and Open Distance Science Teacher Education in Zimbabwe

Science.gov (United States)

Mpofu, Vongai; Samukange, Tendai; Kusure, Lovemore M.; Zinyandu, Tinoidzwa M.; Denhere, Clever; Huggins, Nyakotyo; Wiseman, Chingombe; Ndlovu, Shakespear; Chiveya, Renias; Matavire, Monica; Mukavhi, Leckson; Gwizangwe, Isaac; Magombe, Elliot; Magomelo, Munyaradzi; Sithole, Fungai; Bindura University of Science Education (BUSE),

2012-01-01

This paper reports on a study of the implementation of science teacher education through virtual and open distance learning in the Mashonaland Central Province, Zimbabwe. The study provides insight into challenges faced by students and lecturers on inception of the program at four centres. Data was collected from completed evaluation survey forms…

Open Science and Open Data: Evolving Business Models

OpenAIRE

Melero, Remedios

2013-01-01

The rise of ICT has changed the way scientific inputs and outputs are disseminated and diffused. As a consequence, new business models for open access to Scientific publications and datasets are emerging. This session will explore the new features of the business models for open access and open data as well as the associated benefits and risks.

Semantic Web-based Vocabulary Broker for Open Science

Science.gov (United States)

Ritschel, B.; Neher, G.; Iyemori, T.; Murayama, Y.; Kondo, Y.; Koyama, Y.; King, T. A.; Galkin, I. A.; Fung, S. F.; Wharton, S.; Cecconi, B.

2016-12-01

Keyword vocabularies are used to tag and to identify data of science data repositories. Such vocabularies consist of controlled terms and the appropriate concepts, such as GCMD1 keywords or the ESPAS2 keyword ontology. The Semantic Web-based mash-up of domain-specific, cross- or even trans-domain vocabularies provides unique capabilities in the network of appropriate data resources. Based on a collaboration between GFZ3, the FHP4, the WDC for Geomagnetism5 and the NICT6 we developed the concept of a vocabulary broker for inter- and trans-disciplinary data detection and integration. Our prototype of the Semantic Web-based vocabulary broker uses OSF7 for the mash-up of geo and space research vocabularies, such as GCMD keywords, ESPAS keyword ontology and SPASE8 keyword vocabulary. The vocabulary broker starts the search with "free" keywords or terms of a specific vocabulary scheme. The vocabulary broker almost automatically connects the different science data repositories which are tagged by terms of the aforementioned vocabularies. Therefore the mash-up of the SKOS9 based vocabularies with appropriate metadata from different domains can be realized by addressing LOD10 resources or virtual SPARQL11 endpoints which maps relational structures into the RDF format12. In order to demonstrate such a mash-up approach in real life, we installed and use a D2RQ13 server for the integration of IUGONET14 data which are managed by a relational database. The OSF based vocabulary broker and the D2RQ platform are installed at virtual LINUX machines at the Kyoto University. The vocabulary broker meets the standard of a main component of the WDS15 knowledge network. The Web address of the vocabulary broker is http://wdcosf.kugi.kyoto-u.ac.jp 1 Global Change Master Directory2 Near earth space data infrastructure for e-science3 German Research Centre for Geosciences4 University of Applied Sciences Potsdam5 World Data Center for Geomagnetism Kyoto6 National Institute of Information and

Open access, open education resources and open data in Uganda.

Science.gov (United States)

Salvo, Ivana Di; Mwoka, Meggie; Kwaga, Teddy; Rukundo, Priscilla Aceng; Ernest, Dennis Ssesanga; Osaheni, Louis Aikoriogie; John, Kasibante; Shafik, Kasirye; de Sousa, Agostinho Moreira

2015-01-01

As a follow up to OpenCon 2014, International Federation of Medical Students' Associations (IFMSA) students organized a 3 day workshop Open Access, Open Education Resources and Open Data in Kampala from 15-18 December 2014. One of the aims of the workshop was to engage the Open Access movement in Uganda which encompasses the scientific community, librarians, academia, researchers and students. The IFMSA students held the workshop with the support of: Consortium for Uganda University Libraries (CUUL), The Right to Research Coalition, Electronic Information for Libraries (EIFL), Makerere University, International Health Sciences University (IHSU), Pan African Medical Journal (PAMJ) and the Centre for Health Human Rights and Development (CEHURD). All these organizations are based or have offices in Kampala. The event culminated in a meeting with the Science and Technology Committee of Parliament of Uganda in order to receive the support of the Ugandan Members of Parliament and to make a concrete change for Open Access in the country.

Open data used in water sciences - Review of access, licenses and understandability

Science.gov (United States)

Falkenroth, Esa; Lagerbäck Adolphi, Emma; Arheimer, Berit

2016-04-01

The amount of open data available for hydrology research is continually growing. In the EU-funded project SWITCH-ON (Sharing Water-related Information to Tackle Changes in the Hydrosphere - for Operational Needs: www.water-switch-on.eu), we are addressing water concerns by exploring and exploiting the untapped potential of these new open data. This work is enabled by many ongoing efforts to facilitate the use of open data. For instance, a number of portals provide the means to search for open data sets and open spatial data services (such as the GEOSS Portal, INSPIRE community geoportal or various Climate Services and public portals). However, in general, many research groups in water sciences still hesitate in using this open data. We therefore examined some limiting factors. Factors that limit usability of a dataset include: (1) accessibility, (2) understandability and (3) licences. In the SWITCH-ON project we have developed a search tool for finding and accessing data with relevance to water science in Europe, as the existing ones are not addressing data needs in water sciences specifically. The tool is filled with some 9000 sets of metadata and each one is linked to water related key-words. The keywords are based on the ones developed within the CUAHSI community in USA, but extended with non-hydrosphere topics, additional subclasses and only showing keywords actually having data. Access to data sets: 78% of the data is directly accessible, while the rest is either available after registration and request, or through a web client for visualisation but without direct download. However, several data sets were found to be inaccessible due to server downtime, incorrect links or problems with the host database management system. One possible explanation for this could be that many datasets have been assembled by research project that no longer are funded. Hence, their server infrastructure would be less maintained compared to large-scale operational services

White paper on science and technology, 1997. Striving for an open research community

International Nuclear Information System (INIS)

1997-01-01

This report concerns the policy measures intended to promote science and technology, pursuant to Article 8 of the Science and Technology Basic Law (Law No. 130), enacted in 1995. This report is constituted from three parts. Part 1 and 2 discuss trends in a wide range of scientific and technological activities to help the reader understand the policy measures implemented to promote science and technology, which are then discussed in Part 3. Part 1, titled 'striving for an open research community', attempt an analysis of reform and current and future issues addressed in the Science and Technology Basic Plan, which was enacted in July, 1996. Part 2 uses various data to compare scientific and technological activities in Japan with those in other selected countries. Part 3 relates to policies implanted for the promotion of science and technology in the Science and Technology Agency, Japan Government. Here is described on science and technology policy development, development of comprehensive and systematic policies and promotion of research activities. (G.K.)

Open Content in Open Context

Science.gov (United States)

Kansa, Sarah Whitcher; Kansa, Eric C.

2007-01-01

This article presents the challenges and rewards of sharing research content through a discussion of Open Context, a new open access data publication system for field sciences and museum collections. Open Context is the first data repository of its kind, allowing self-publication of research data, community commentary through tagging, and clear…

LAMMPS Project Report for the Trinity KNL Open Science Period.

Energy Technology Data Exchange (ETDEWEB)

Moore, Stan Gerald [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Thompson, Aidan P. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Wood, Mitchell [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

2017-08-01

LAMMPS is a classical molecular dynamics code (lammps.sandia.gov) used to model materials science problems at Sandia National Laboratories and around the world. LAMMPS was one of three Sandia codes selected to participate in the Trinity KNL (TR2) Open Science period. During this period, three different problems of interest were investigated using LAMMPS. The first was benchmarking KNL performance using different force field models. The second was simulating void collapse in shocked HNS energetic material using an all-atom model. The third was simulating shock propagation through poly-crystalline RDX energetic material using a coarse-grain model, the results of which were used in an ACM Gordon Bell Prize submission. This report describes the results of these simulations, lessons learned, and some hardware issues found on Trinity KNL as part of this work.

A Bright Spark: Open Teaching of Science Using Faraday's Lectures on Candles

Science.gov (United States)

Walker, Mark; Groger, Martin; Schutler, Kirsten; Mosler, Bernd

2008-01-01

As well as being a founding father of modern chemistry and physics Michael Faraday was also a skilled lecturer, able to explain scientific principles and ideas simply and concisely to nonscientific audiences. However science didactics today emphasizes the use of open and student-centered methods of teaching in which students find and develop…

Dampak Pertambangan Terhadap Perubahan Penggunaan Lahan dan Kesesuaian Peruntukan Ruang (Studi Kasus Kabupaten Luwu Timur, Provinsi Sulawesi Selatan

Directory of Open Access Journals (Sweden)

Wahyu Hidayat

2015-05-01

Full Text Available Abstrak. Penelitian tentang perubahan tutupan/penggunaan lahan dan kesesuaian peruntukan ruang sangat penting, karena perubahan tutupan/penggunaan lahan memiliki dampak terhadap lingkungan fisik dan kesesuaian peruntukan ruang memiliki dampak terhadap peraturan dan perundang-undangan yang mengatur tata ruang. Adapun tujuan artikel ini adalah mengetahui perubahan tutupan/penggunaan lahan dengan menggunakan data citra satelit, memprediksi tutupan/penggunaan lahan 10 tahun ke depan, dan mengetahui faktor-faktor yang mempengaruhi terjadinya perubahan tutupan/penggunaan lahan. Lokasi studi penelitian adalah Kabupaten Luwu Timur. Metode penelitian yang digunakan yaitu Land Change Modeler, Ca-Markov, Enter dan  Overlay. Hasil Analisis terhadap perubahan tutupan/penggunaan lahan menunjukkan bahwa telah terjadi perubahan tipe penggunaan lahan tahun 2002 dan 2013. Penggunaan lahan terbuka yang disebabkan oleh perusahaan tambang mengalami perubahan  seluas 15. 375.93 ha. Kontribusi terbesar dari kelas lahan terbuka berasal dari kelas lahan hutan. Hasil prediksi tutupan/penggunaan lahan tahun 2024 menunjukkan bahwa lahan pemukiman akan bertambah sebesar  23 172.63 ha diikuti oleh lahan terbuka sebesar 19 947.56 ha. Faktor yang berpengaruh terhadap perubahan lahan dari semua kelas tutupan/penggunaan lahan, perubahan penggunaan lahan hutan ke lahan terbuka dan perubahan lahan hutan ke lahan terbangun/permukiman adalah alokasi RTRW untuk kawasan, lokasi pertambangan dan lereng.Kata kunci. Perubahan tutupan/penggunaan lahan, kesesuaian peruntukan ruang, pertambanganAbstract. The studies of land use/cover changes (LUCC and suitability of land utilization are very important because the LUCC affects the physical environment and suitability of space utilization affects regulations and laws on spatial planning. This article aims to measure  LUCC by using satellite imaginery, to predict the results of LUCC 10 years on, to explain out factors affecting  LUCC and

Improved Management of Water and Natural Resources Requires Open, Cognizant, Adaptive Science and Policy

Science.gov (United States)

Glynn, P. D.; Voinov, A. A.; Shapiro, C. D.; Jenni, K. E.

2017-12-01

Water issues impact the availability and use of other natural resources as well as environmental conditions. In an increasingly populated hyper-connected world, water issues are increasingly "wicked problems": complex problems with high uncertainties and no independent observers. Water is essential to life, and life affects water quality and availability. Scientists, managers, decision-makers, and the greater public all have a stake in improving the management of water resources. In turn, they are part of the systems that they are studying, deciding on, affecting, or trying to improve. Governance of water issues requires greater accessibility, traceability, and accountability (ATA) in science and policy. Water-related studies and decision-making need transdisciplinary science, inclusive participatory processes, and consideration and acceptance of multiple perspectives. Biases, Beliefs, Heuristics, and Values (BBHV) shape much of our perceptions and knowledge, and inevitably, affect both science and policy. Understanding the role of BBHV is critical to (1) understanding individual and group judgments and choices, (2) recognizing potential differences between societal "wants" and societal "needs", and (3) identifying "winners" and "losers" of policy decisions. Societal acceptance of proposed policies and actions can be fostered by enhancing participatory processes and by providing greater ATA in science, in policy, and in development of the laws, rules, and traditions that constrain decision-making. An adaptive science-infused governance framework is proposed that seeks greater cognizance of the role of BBHV in shaping science and policy choices and decisions, and that also seeks "Open Traceable Accountable Policy" to complement "Open Science". We discuss the limitations of the governance that we suggest, as well as tools and approaches to help implementation.

Cuban Science and the Open Access Alternative

CERN Document Server

Arencibia Jorge, Ricardo; Torricella-Morales, Raúl G

2004-01-01

Science in Cuba has experienced extraordinary development since the triumph of the Cuban Revolution, in spite of the blockade to which Cuba has been subjected by the United States Government, and thanks to the support and cooperation of the countries that were part of the former Socialist Block. However, after the destruction of the Socialist Block, the Cuban economy suffered through a restructuring process that included the reorganization of the traditional systems for spreading scientific information. At that moment, it was necessary to use alternative means to effectively publicise, to the international scientific community, the information generated by Cuban scientists and scholars. This paper briefly reviews this new era, the institutions that led the process of change, and the future projections based on knowledge of the digital environment and the creation of electronic and open access information sources.

Open Access Policies of Research Funders: The Case Study of the Austrian Science Fund (FWF)

OpenAIRE

Tonto, Yaşar; Doğan, Güleda; Al, Umut; Madran, Orçun

2015-01-01

The Austrian Science Fund (FWF) is the main funder for basic research in Austria. FWF has been instrumental in promoting Open Access in Austria and elsewhere and possesses a strong Open Access policy for the research it funds. This case study presents FWF as a good practice of an effective funder policy on account of its comprehensive strategy and multi-faceted approach for implementing and supporting it.

Migrating Open Science Grid to RPMs

International Nuclear Information System (INIS)

Roy, Alain

2012-01-01

We recently completed a significant transition in the Open Science Grid (OSG) in which we moved our software distribution mechanism from the useful but niche system called Pacman to a community-standard native package system, RPM. In this paper we explore some of the lessons learned during this transition as well as our earlier work, lessons that we believe are valuable not only for software distribution and packaging, but also for software engineering in a distributed computing environment where reliability is critical. We discuss the benefits found in moving to a community standard, including the abilities to reuse existing packaging, to donate existing packaging back to the community, and to leverage existing skills in the community. We describe our approach to testing in which we test our software against multiple versions of the OS, including pre-releases of the OS, in order to find surprises before our users do. Finally, we discuss our large-scale evaluation testing and community testing, which are essential for both quality and community acceptance.

Entropies of the Chinese Land Use/Cover Change from 1990 to 2010 at a County Level

Directory of Open Access Journals (Sweden)

Yong Fan

2017-01-01

Full Text Available Land Use/Cover Change (LUCC has gradually became an important direction in the research of global changes. LUCC is a complex system, and entropy is a measure of the degree of disorder of a system. According to land use information entropy, this paper analyzes changes in land use from the perspective of the system. Research on the entropy of LUCC structures has a certain “guiding role” for the optimization and adjustment of regional land use structure. Based on the five periods of LUCC data from the year of 1990 to 2010, this paper focuses on analyzing three types of LUCC entropies among counties in China—namely, Shannon, Renyi, and Tsallis entropies. The findings suggest that: (1 Shannon entropy can reflect the volatility of the LUCC, that Renyi and Tsallis entropies also have this function when their parameter has a positive value, and that Renyi and Tsallis entropies can reflect the extreme case of the LUCC when their parameter has a negative value.; (2 The entropy of China’s LUCC is uneven in time and space distributions, and that there is a large trend during 1990–2010, the central region generally has high entropy in space.

Leveraging Open Standards and Technologies to Enhance Community Access to Earth Science Lidar Data

Science.gov (United States)

Crosby, C. J.; Nandigam, V.; Krishnan, S.; Cowart, C.; Baru, C.; Arrowsmith, R.

2011-12-01

Lidar (Light Detection and Ranging) data, collected from space, airborne and terrestrial platforms, have emerged as an invaluable tool for a variety of Earth science applications ranging from ice sheet monitoring to modeling of earth surface processes. However, lidar present a unique suite of challenges from the perspective of building cyberinfrastructure systems that enable the scientific community to access these valuable research datasets. Lidar data are typically characterized by millions to billions of individual measurements of x,y,z position plus attributes; these "raw" data are also often accompanied by derived raster products and are frequently terabytes in size. As a relatively new and rapidly evolving data collection technology, relevant open data standards and software projects are immature compared to those for other remote sensing platforms. The NSF-funded OpenTopography Facility project has developed an online lidar data access and processing system that co-locates data with on-demand processing tools to enable users to access both raw point cloud data as well as custom derived products and visualizations. OpenTopography is built on a Service Oriented Architecture (SOA) in which applications and data resources are deployed as standards compliant (XML and SOAP) Web services with the open source Opal Toolkit. To develop the underlying applications for data access, filtering and conversion, and various processing tasks, OpenTopography has heavily leveraged existing open source software efforts for both lidar and raster data. Operating on the de facto LAS binary point cloud format (maintained by ASPRS), open source libLAS and LASlib libraries provide OpenTopography data ingestion, query and translation capabilities. Similarly, raster data manipulation is performed through a suite of services built on the Geospatial Data Abstraction Library (GDAL). OpenTopography has also developed our own algorithm for high-performance gridding of lidar point cloud data

A Template for Open Inquiry: Using Questions to Encourage and Support Inquiry in Earth and Space Science

Science.gov (United States)

Hermann, Ronald S.; Miranda, Rommel J.

2010-01-01

This article provides an instructional approach to helping students generate open-inquiry research questions, which the authors call the "open-inquiry question template." This template was created based on their experience teaching high school science and preservice university methods courses. To help teachers implement this template, they…

Extraction of events and rules of land use/cover change from the policy text

Science.gov (United States)

Lin, Guangfa; Xia, Beicheng; Huang, Wangli; Jiang, Huixian; Chen, Youfei

2007-06-01

The database of recording the snapshots of land parcels history is the foundation for the most of the models on simulating land use/cover change (LUCC) process. But the sequences of temporal snapshots are not sufficient to deduce and describe the mechanism of LUCC process. The temporal relationship between scenarios of LUCC we recorded could not be transfer into causal relationship categorically, which was regarded as a key factor in spatial-temporal reasoning. The proprietor of land parcels adapted themselves to the policies from governments and the change of production market, and then made decisions in this or that way. The occurrence of each change of a land parcel in an urban area was often related with one or more decision texts when it was investigated on the local scale with high resolution of the background scene. These decision texts may come from different sections of a hierarchical government system on different levels, such as villages or communities, towns or counties, cities, provinces or even the paramount. All these texts were balance results between advantages and disadvantages of different interest groups. They are the essential forces of LUCC in human dimension. Up to now, a methodology is still wanted for on how to express these forces in a simulation system using GIS as a language. The presented paper was part of our initial research on this topic. The term "Event" is a very important concept in the frame of "Object-Oriented" theory in computer science. While in the domain of temporal GIS, the concept of event was developed in another category. The definitions of the event and their transformation relationship were discussed in this paper on three modeling levels as real world level, conceptual level and programming level. In this context, with a case study of LUCC in recent 30 years in Xiamen city of Fujian province, P. R. China, the paper focused on how to extract information of events and rules from the policy files collected and integrate

Polymers – A New Open Access Scientific Journal on Polymer Science

Directory of Open Access Journals (Sweden)

Shu-Kun Lin

2009-12-01

Full Text Available Polymers is a new interdisciplinary, Open Access scientific journal on polymer science, published by Molecular Diversity Preservation International (MDPI. This journal welcomes manuscript submissions on polymer chemistry, macromolecular chemistry, polymer physics, polymer characterization and all related topics. Both synthetic polymers and natural polymers, including biopolymers, are considered. Manuscripts will be thoroughly peer-reviewed in a timely fashion, and papers will be published, if accepted, within 6 to 8 weeks after submission. [...

Cyberinfrastructure for Open Science at the Montreal Neurological Institute.

Science.gov (United States)

Das, Samir; Glatard, Tristan; Rogers, Christine; Saigle, John; Paiva, Santiago; MacIntyre, Leigh; Safi-Harab, Mouna; Rousseau, Marc-Etienne; Stirling, Jordan; Khalili-Mahani, Najmeh; MacFarlane, David; Kostopoulos, Penelope; Rioux, Pierre; Madjar, Cecile; Lecours-Boucher, Xavier; Vanamala, Sandeep; Adalat, Reza; Mohaddes, Zia; Fonov, Vladimir S; Milot, Sylvain; Leppert, Ilana; Degroot, Clotilde; Durcan, Thomas M; Campbell, Tara; Moreau, Jeremy; Dagher, Alain; Collins, D Louis; Karamchandani, Jason; Bar-Or, Amit; Fon, Edward A; Hoge, Rick; Baillet, Sylvain; Rouleau, Guy; Evans, Alan C

2016-01-01

Data sharing is becoming more of a requirement as technologies mature and as global research and communications diversify. As a result, researchers are looking for practical solutions, not only to enhance scientific collaborations, but also to acquire larger amounts of data, and to access specialized datasets. In many cases, the realities of data acquisition present a significant burden, therefore gaining access to public datasets allows for more robust analyses and broadly enriched data exploration. To answer this demand, the Montreal Neurological Institute has announced its commitment to Open Science, harnessing the power of making both clinical and research data available to the world (Owens, 2016a,b). As such, the LORIS and CBRAIN (Das et al., 2016) platforms have been tasked with the technical challenges specific to the institutional-level implementation of open data sharing, including: Comprehensive linking of multimodal data (phenotypic, clinical, neuroimaging, biobanking, and genomics, etc.)Secure database encryption, specifically designed for institutional and multi-project data sharing, ensuring subject confidentiality (using multi-tiered identifiers).Querying capabilities with multiple levels of single study and institutional permissions, allowing public data sharing for all consented and de-identified subject data.Configurable pipelines and flags to facilitate acquisition and analysis, as well as access to High Performance Computing clusters for rapid data processing and sharing of software tools.Robust Workflows and Quality Control mechanisms ensuring transparency and consistency in best practices.Long term storage (and web access) of data, reducing loss of institutional data assets.Enhanced web-based visualization of imaging, genomic, and phenotypic data, allowing for real-time viewing and manipulation of data from anywhere in the world.Numerous modules for data filtering, summary statistics, and personalized and configurable dashboards. Implementing

Open Educational Resources in Support of Science Learning: Tools for Inquiry and Observation

Science.gov (United States)

Scanlon, Eileen

2012-01-01

This article focuses on the potential of free tools, particularly inquiry tools for influencing participation in twenty-first-century learning in science, as well as influencing the development of communities around tools. Two examples are presented: one on the development of an open source tool for structured inquiry learning that can bridge the…

Science education through open and distance learning at Higher Education level

Directory of Open Access Journals (Sweden)

Amrita NIGAM

2007-10-01

Full Text Available Abstract The changes faced by the society in the past few decades brought revolution in all areas. The job requirements have undergone change tremendously. The emergence of e-culture, e-education, e-governance, e-training, e-work sites and so on questioned the capacity of conventional face to face education in catering to all and relevance of existing job related skills to a great extent in the emerging global society. Today, every one has to update his/her educational and/or professional skills and competencies to cope up with the emerging work challenges. This is more so in the field of science and technology. At the same time, it is impossible to cater to educational and training opportunities to one and all those who aspire for it through the conventional set up. The distance and open learning (ODL seems to be one of the viable alternatives. Today, the success and viability of ODL is accepted globally. Coulter (1989, through a study demonstrated that ODL is a cost-effective medium in providing educational opportunities. Similarly Holmberg (1981 also mentioned ODL as a systematic teaching-learning medium by using variety of medium for imparting learning. The present study is an attempt to study the experiences of the open science learners of IGNOU on different aspect of the science higher education. Here a questionnaire was used to collect the data and responses from 81 students enrolled for B. Sc. from IGNOU were collected. The findings of the study reported that society has undergone drastic changes in the last few decades. The revolution led due to Information and Communication Technologies (ICTs have widely affected all aspects of society. The emerging jobs require entirely new skills and competencies i.e., employment in BPOs or switching over to e-governance, e-Banking and e- based sectors. Even e-learning has made numerous expectations from teachers and other personnel. The use of ICTs in almost every field needs adequately trained

How open science helps researchers succeed

Science.gov (United States)

McKiernan, Erin C; Bourne, Philip E; Brown, C Titus; Buck, Stuart; Kenall, Amye; Lin, Jennifer; McDougall, Damon; Nosek, Brian A; Ram, Karthik; Soderberg, Courtney K; Spies, Jeffrey R; Thaney, Kaitlin; Updegrove, Andrew; Woo, Kara H; Yarkoni, Tal

2016-01-01

Open access, open data, open source and other open scholarship practices are growing in popularity and necessity. However, widespread adoption of these practices has not yet been achieved. One reason is that researchers are uncertain about how sharing their work will affect their careers. We review literature demonstrating that open research is associated with increases in citations, media attention, potential collaborators, job opportunities and funding opportunities. These findings are evidence that open research practices bring significant benefits to researchers relative to more traditional closed practices. DOI: http://dx.doi.org/10.7554/eLife.16800.001 PMID:27387362

Unlocking the full potential of open innovation in the life sciences through a classification system.

Science.gov (United States)

Nilsson, Niclas; Minssen, Timo

2018-04-01

A common understanding of expectations and requirements is critical for boosting research-driven business opportunities in open innovation (OI) settings. Transparent communication requires common definitions and standards for OI to align the expectations of both parties. Here, we suggest a five-level classification system for OI models, reflecting the degree of openness. The aim of this classification system is to reduce contract negotiation complexity and times between two parties looking to engage in OI. Systematizing definitions and contractual terms for OI in the life sciences helps to reduce entry barriers and boosts collaborative value generation. By providing a contractual framework with predefined rules, science will be allowed to move more freely, thus maximizing the potential of OI. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

ScienceSoft: Open software for open science

CERN Document Server

Di Meglio, Alberto

2012-01-01

Most of the software developed today by research institutes, university, research projects, etc. is typically stored in local source and binary repositories and available for the duration of a project lifetime only. Finding software based on given functional characteristics is almost impossible and binary packages are mostly available from local university or project repositories rather than the open source community repositories like Fedora/EPEL or Debian. Furthermore general information about who develops, contributes to and most importantly uses a given software program is very difficult to find out and yet the widespread availability of such information would give more visibility and credibility to the software products. The creation of links or relationships not only among pieces of software, but equally among the people interacting with the software across and beyond specific project and communities would foster a more active community and create the conditions for sharing ideas and skills, a ...

Opening up animal research and science-society relations? A thematic analysis of transparency discourses in the United Kingdom.

Science.gov (United States)

McLeod, Carmen; Hobson-West, Pru

2016-10-01

The use of animals in scientific research represents an interesting case to consider in the context of the contemporary preoccupation with transparency and openness in science and governance. In the United Kingdom, organisations critical of animal research have long called for more openness. More recently, organisations involved in animal research also seem to be embracing transparency discourses. This article provides a detailed analysis of publically available documents from animal protection groups, the animal research community and government/research funders. Our aim is to explore the similarities and differences in the way transparency is constructed and to identify what more openness is expected to achieve. In contrast to the existing literature, we conclude that the slipperiness of transparency discourses may ultimately have transformative implications for the relationship between science and society and that contemporary openness initiatives might be sowing the seeds for change to the status quo. © The Author(s) 2015.

Challenges of Virtual and Open Distance Science Teacher Education in Zimbabwe

OpenAIRE

Vongai Mpofu; Tendai Samukange; Lovemore M Kusure; Tinoidzwa M Zinyandu; Clever Denhere; Nyakotyo Huggins; Chingombe Wiseman; Shakespear Ndlovu; Rennias Chiveya; Monica Matavire; Leckson Mukavhi; Isaac Gwizangwe; Elliot Magombe; Munyaradzi Magomelo; Fungai Sithole

2012-01-01

This paper reports on a study of the implementation of science teacher education through virtual and open distance learning in the Mashonaland Central Province, Zimbabwe. The study provides insight into challenges faced by students and lecturers on inception of the program at four centres. Data was collected from completed evaluation survey forms of forty-two lecturers who were directly involved at the launch of the program and in-depth interviews. Qualitative data analysis revealed that the ...

ScienceCentral: open access full-text archive of scientific journals based on Journal Article Tag Suite regardless of their languages.

Science.gov (United States)

Huh, Sun

2013-01-01

ScienceCentral, a free or open access, full-text archive of scientific journal literature at the Korean Federation of Science and Technology Societies, was under test in September 2013. Since it is a Journal Article Tag Suite-based full text database, extensible markup language files of all languages can be presented, according to Unicode Transformation Format 8-bit encoding. It is comparable to PubMed Central: however, there are two distinct differences. First, its scope comprises all science fields; second, it accepts all language journals. Launching ScienceCentral is the first step for free access or open access academic scientific journals of all languages to leap to the world, including scientific journals from Croatia.

Open Access Research via Collaborative Educational Blogging: A Case Study from Library & Information Science

Science.gov (United States)

Rebmann, Kristen Radsliff; Clark, Camden Bernard

2017-01-01

This article charts the development of activities for online graduate students in library and information science. Project goals include helping students develop competencies in understanding open access publishing, synthesizing research in the field, and engaging in scholarly communication via collaborative educational blogging. Using a design…

Pika: A snow science simulation tool built using the open-source framework MOOSE

Science.gov (United States)

Slaughter, A.; Johnson, M.

2017-12-01

The Department of Energy (DOE) is currently investing millions of dollars annually into various modeling and simulation tools for all aspects of nuclear energy. An important part of this effort includes developing applications based on the open-source Multiphysics Object Oriented Simulation Environment (MOOSE; mooseframework.org) from Idaho National Laboratory (INL).Thanks to the efforts of the DOE and outside collaborators, MOOSE currently contains a large set of physics modules, including phase-field, level set, heat conduction, tensor mechanics, Navier-Stokes, fracture and crack propagation (via the extended finite-element method), flow in porous media, and others. The heat conduction, tensor mechanics, and phase-field modules, in particular, are well-suited for snow science problems. Pika--an open-source MOOSE-based application--is capable of simulating both 3D, coupled nonlinear continuum heat transfer and large-deformation mechanics applications (such as settlement) and phase-field based micro-structure applications. Additionally, these types of problems may be coupled tightly in a single solve or across length and time scales using a loosely coupled Picard iteration approach. In addition to the wide range of physics capabilities, MOOSE-based applications also inherit an extensible testing framework, graphical user interface, and documentation system; tools that allow MOOSE and other applications to adhere to nuclear software quality standards. The snow science community can learn from the nuclear industry and harness the existing effort to build simulation tools that are open, modular, and share a common framework. In particular, MOOSE-based multiphysics solvers are inherently parallel, dimension agnostic, adaptive in time and space, fully coupled, and capable of interacting with other applications. The snow science community should build on existing tools to enable collaboration between researchers and practitioners throughout the world, and advance the

Supporting open collaboration in science through explicit and linked semantic description of processes

Science.gov (United States)

Gil, Yolanda; Michel, Felix; Ratnakar, Varun; Read, Jordan S.; Hauder, Matheus; Duffy, Christopher; Hanson, Paul C.; Dugan, Hilary

2015-01-01

The Web was originally developed to support collaboration in science. Although scientists benefit from many forms of collaboration on the Web (e.g., blogs, wikis, forums, code sharing, etc.), most collaborative projects are coordinated over email, phone calls, and in-person meetings. Our goal is to develop a collaborative infrastructure for scientists to work on complex science questions that require multi-disciplinary contributions to gather and analyze data, that cannot occur without significant coordination to synthesize findings, and that grow organically to accommodate new contributors as needed as the work evolves over time. Our approach is to develop an organic data science framework based on a task-centered organization of the collaboration, includes principles from social sciences for successful on-line communities, and exposes an open science process. Our approach is implemented as an extension of a semantic wiki platform, and captures formal representations of task decomposition structures, relations between tasks and users, and other properties of tasks, data, and other relevant science objects. All these entities are captured through the semantic wiki user interface, represented as semantic web objects, and exported as linked data.

Order Without Intellectual Property Law: Open Science in Influenza.

Science.gov (United States)

Kapczynski, Amy

Today, intellectual property (IP) scholars accept that IP as an approach to information production has serious limits. But what lies beyond IP? A new literature on "intellectual production without IP" (or "IP without IP") has emerged to explore this question, but its examples and explanations have yet to convince skeptics. This Article reorients this new literature via a study of a hard case: a global influenza virus-sharing network that has for decades produced critically important information goods, at significant expense, and in a loose-knit group--all without recourse to IP. I analyze the Network as an example of "open science," a mode of information production that differs strikingly from conventional IP, and yet that successfully produces important scientific goods in response to social need. The theory and example developed here refute the most powerful criticisms of the emerging "IP without IP" literature, and provide a stronger foundation for this important new field. Even where capital costs are high, creation without IP can be reasonably effective in social terms, if it can link sources of funding to reputational and evaluative feedback loops like those that characterize open science. It can also be sustained over time, even by loose-knit groups and where the stakes are high, because organizations and other forms of law can help to stabilize cooperation. I also show that contract law is well suited to modes of information production that rely upon a "supply side" rather than "demand side" model. In its most important instances, "order without IP" is not order without governance, nor order without law. Recognizing this can help us better ground this new field, and better study and support forms of knowledge production that deserve our attention, and that sometimes sustain our very lives.

The ICTJA-CSIC Science Week 2016: an open door to Earth Sciences for secondary education students

Science.gov (United States)

Cortes-Picas, Jordi; Diaz, Jordi; Fernandez-Turiel, Jose-Luis; Garcia-Castellanos, Daniel; Geyer, Adelina; Jurado, Maria-Jose; Montoya, Encarni; Rejas Alejos, Marta; Sánchez-Pastor, Pilar; Valverde-Perez, Angel

2017-04-01

The Science Week is one of the main scientific outreach events every year in Spain. The Institute of Earth Sciences Jaume Almera of CSIC (ICTJA-CSIC) participates in it since many years ago, opening its doors and proposing several activities in which it is shown what kind of multidisciplinary research is being developed at the Institute and in Geosciences. The activities,developed as workshops, are designed and conducted by scientific and technical personnel of the centre, who participates in the Science Week voluntarily. The activities proposed by the ICTJA-CSIC staff are designed for a target audience composed by secondary school students (12-18 years). The ICTJA-CSIC joined Science Week 2016 in the framework of the activity entitled "What we investigate in Earth Sciences?". The aim is to show to the society what is being investigated in the ICTJA-CSIC. In addition, it is intended, with the contact and interaction between the public and the institute researchers, to increase the interest in scientific activity and, if possible, to generate new vocations in the field of the Earth Sciences among secondary school pupils. We show in this communication the experience of the Science Week 2016 at the ICTJA-CSIC, carried out with the effort and commitment of the of the Institute's personnel with the outreach of Earth Sciences research. Between November 14th and 19th 2016, more than 100 students from four secondary schools from Barcelona area visited the Institute and took part in the Science Week. A total of six interactive workshops were prepared showing different features of seismology, geophysical borehole logging, analog and digital modelling, paleoecology, volcanology and geochemistry. As a novelty, this year a new workshop based on an augmented reality sandbox was offered to show and to simulate the processes of creation and evolution of the topographic relief. In addition, within the workshop dedicated to geophysical borehole logging, six exact replicates of

Toward Open Science at the European Scale: Geospatial Semantic Array Programming for Integrated Environmental Modelling

Science.gov (United States)

de Rigo, Daniele; Corti, Paolo; Caudullo, Giovanni; McInerney, Daniel; Di Leo, Margherita; San-Miguel-Ayanz, Jesús

2013-04-01

Interfacing science and policy raises challenging issues when large spatial-scale (regional, continental, global) environmental problems need transdisciplinary integration within a context of modelling complexity and multiple sources of uncertainty [1]. This is characteristic of science-based support for environmental policy at European scale [1], and key aspects have also long been investigated by European Commission transnational research [2-5]. Parameters ofthe neededdata- transformations ? = {?1????m} (a.5) Wide-scale transdisciplinary modelling for environment. Approaches (either of computational science or of policy-making) suitable at a given domain-specific scale may not be appropriate for wide-scale transdisciplinary modelling for environment (WSTMe) and corresponding policy-making [6-10]. In WSTMe, the characteristic heterogeneity of available spatial information (a) and complexity of the required data-transformation modelling (D- TM) appeal for a paradigm shift in how computational science supports such peculiarly extensive integration processes. In particular, emerging wide-scale integration requirements of typical currently available domain-specific modelling strategies may include increased robustness and scalability along with enhanced transparency and reproducibility [11-15]. This challenging shift toward open data [16] and reproducible research [11] (open science) is also strongly suggested by the potential - sometimes neglected - huge impact of cascading effects of errors [1,14,17-19] within the impressively growing interconnection among domain-specific computational models and frameworks. From a computational science perspective, transdisciplinary approaches to integrated natural resources modelling and management (INRMM) [20] can exploit advanced geospatial modelling techniques with an awesome battery of free scientific software [21,22] for generating new information and knowledge from the plethora of composite data [23-26]. From the perspective

Citizen Science and Open Data: a model for Invasive Alien Species in Europe

Directory of Open Access Journals (Sweden)

Ana Cristina Cardoso

2017-07-01

Full Text Available Invasive Alien Species (IAS are a growing threat to Europe's biodiversity. The implementation of European Union Regulation on IAS can benefit from the involvement of the public in IAS recording and management through Citizen Science (CS initiatives. Aiming to tackle issues related with the use of CS projects on IAS topics, a dedicated workshop titled “Citizen Science and Open Data: a model for Invasive Alien Species in Europe” was organized by the Joint Research Centre (JRC and the European Cooperation in Science and Technology (COST Association. Fifty key stakeholders from all Europe, including two Members of the European Parliament, attended the workshop. With a clear focus on IAS, the workshop aimed at addressing the following issues: a CS and policy, b citizen engagement, and c CS data management. Nine short presentations provided input on CS and IAS issues. Participants discussed specific topics in several round tables (“world café” style and reported back their conclusions to the audience and full assembly moderated discussions. Overall, the workshop enabled the sharing of ideas, approaches and best practices regarding CS and IAS. Specific opportunities and pitfalls of using CS data in the whole policy cycle for IAS were recognized. Concerning the implementation of the IAS Regulation, CS data could complement official surveillance systems, and contribute to the early warning of the IAS of Union concern after appropriate validation by the Member States’ competent authorities. CS projects can additionally increase awareness and empower citizens. Attendees pointed out the importance for further public engagement in CS projects on IAS that demonstrate specific initiatives and approaches and analyze lessons learned from past experiences. In addition, the workshop noted that the data gathered from different CS projects on IAS are fragmented. It highlighted the need for using an open and accessible platform to upload data originating

Impact of Land-Use and Land-Cover Change on urban air quality in representative cities of China

Science.gov (United States)

Sun, L.; Wei, J.; Duan, D. H.; Guo, Y. M.; Yang, D. X.; Jia, C.; Mi, X. T.

2016-05-01

The atmospheric particulate pollution in China is getting worse. Land-Use and Land-Cover Change (LUCC) is a key factor that affects atmospheric particulate pollution. Understanding the response of particulate pollution to LUCC is necessary for environmental protection. Eight representative cities in China, Qingdao, Jinan, Zhengzhou, Xi'an, Lanzhou, Zhangye, Jiuquan, and Urumqi were selected to analyze the relationship between particulate pollution and LUCC. The MODIS (MODerate-resolution Imaging Spectroradiometer) aerosol product (MOD04) was used to estimate atmospheric particulate pollution for nearly 10 years, from 2001 to 2010. Six land-use types, water, woodland, grassland, cultivated land, urban, and unused land, were obtained from the MODIS land cover product (MOD12), where the LUCC of each category was estimated. The response of particulate pollution to LUCC was analyzed from the above mentioned two types of data. Moreover, the impacts of time-lag and urban type changes on particulate pollution were also considered. Analysis results showed that due to natural factors, or human activities such as urban sprawl or deforestation, etc., the response of particulate pollution to LUCC shows obvious differences in different areas. The correlation between particulate pollution and LUCC is lower in coastal areas but higher in inland areas. The dominant factor affecting urban air quality in LUCC changes from ocean, to woodland, to urban land, and eventually into grassland or unused land when moving from the coast to inland China.

How partnership accelerates Open Science: High Energy Physics and INSPIRE, a case study of a complex repository ecosystem

CERN Document Server

AUTHOR|(CDS)2079501; Hecker, Bernard Louis; Holtkamp, Annette; Mele, Salvatore; O'Connell, Heath; Sachs, Kirsten; Simko, Tibor; Schwander, Thorsten

2013-01-01

Public calls, agency mandates and scientist demand for Open Science are by now a reality with different nuances across diverse research communities. A complex “ecosystem” of services and tools, mostly communityDdriven, will underpin this revolution in science. Repositories stand to accelerate this process, as “openness” evolves beyond text, in lockstep with scholarly communication. We present a case study of a global discipline, HighDEnergy Physics (HEP), where most of these transitions have already taken place in a “social laboratory” of multiple global information services interlinked in a complex, but successful, ecosystem at the service of scientists. We discuss our firstDhand experience, at a technical and organizational level, of leveraging partnership across repositories and with the user community in support of Open Science, along threads relevant to the OR2013 community.

LLNL Mercury Project Trinity Open Science Final Report

Energy Technology Data Exchange (ETDEWEB)

Brantley, Patrick [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Dawson, Shawn [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); McKinley, Scott [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); O' Brien, Matt [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Peters, Doug [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Pozulp, Mike [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Becker, Greg [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Mohror, Kathryn [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Moody, Adam [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

2016-04-20

The Mercury Monte Carlo particle transport code developed at Lawrence Livermore National Laboratory (LLNL) is used to simulate the transport of radiation through urban environments. These challenging calculations include complicated geometries and require significant computational resources to complete. As a result, a question arises as to the level of convergence of the calculations with Monte Carlo simulation particle count. In the Trinity Open Science calculations, one main focus was to investigate convergence of the relevant simulation quantities with Monte Carlo particle count to assess the current simulation methodology. Both for this application space but also of more general applicability, we also investigated the impact of code algorithms on parallel scaling on the Trinity machine as well as the utilization of the Trinity DataWarp burst buffer technology in Mercury via the LLNL Scalable Checkpoint/Restart (SCR) library.

Automated conversion of Docker images to CVMFS for LIGO and the Open Science Grid

CERN Multimedia

CERN. Geneva

2018-01-01

In this lightning talk, I will discuss the development of a webhook-based tool for automatically converting Docker images from DockerHub and private registries to CVMFS filesystems. The tool is highly reliant on previous work by the Open Science Grid for scripted nightly conversion of images from DockerHub.

`Opening up' a science task: an exploration of shifting embodied participation of a multilingual primary student

Science.gov (United States)

Gómez Fernández, Roberto; Siry, Christina

2018-05-01

Culturally and linguistically diverse (CLD) students have different home languages and cultures from many of their peers, In our context, these students suffer from higher school drop-out rates than their peers and are far behind their peers in sciences. This study investigates the interactions of a nine-year-old child whose home language is Portuguese and who learns science in this specific case in a diglossic environment in the Luxembourgish school system, in which his teacher used German for written tasks and Luxembourgish for oral communication. We examine, moment-by-moment, the interactions around a task regarding environmental protection. The role of this Lusoburguês (Luxembourgish and Portuguese identities and nationalities combined) student and his embodiment and participation changes when his group is confronted with an activity that requires an increased amount of manipulation. His identity evolves in interaction, as he becomes the leader in his group, and through a playful stance, manages to open the task so that his peers can further explore. Implications include the value of including more open-ended investigations in the teaching and learning of science as well as implications for further study concerning practice-based approaches in science classrooms with CLD students, particularly in increasingly multilingual/cultural and/or diglossic or heteroglossic school contexts.

Unlocking the full potential of Open Innovation in the Life Sciences through a classification system

DEFF Research Database (Denmark)

Nilsson, Niclas; Minssen, Timo

2018-01-01

Open Innovation (OI) holds much promise as a new business model for collaborative value creation in life science. From a corporate perspective, benefits include faster access to new relevant technology; the opportunity for Biotechs and Small to Medium-sized Enterprises (SMEs) to explore new marke...

Digital platforms for research collaboration: using design science in developing a South African open knowledge repository

CSIR Research Space (South Africa)

van Biljon, J

2017-05-01

Full Text Available ) enabled collaboration through the design and development of a sustainable open knowledge repository (OKR) according to the design science research (DSR) paradigm. OKRs are tools used to support knowledge sharing and collaboration. The theoretical...

MARKOV PROCESSES IN MODELING LAND USE AND LAND COVER CHANGES IN SINTRA-CASCAIS, PORTUGAL

Directory of Open Access Journals (Sweden)

PEDRO CABRAL

2009-01-01

Full Text Available En este artículo los procesos de alteración de la utilización y ocupación del suelo (LUCC son investigados recorriendo-se a técnicas de teledetección y a cadenas de Markov en lasmunicipalidades de Sintra y Cascais (Portugal entre los anos de 1989 y 2000. El papel del Parque Natural de Sintra-Cascais (PNSC es evaluado.Los resultados demuestran que, dentro del PNSC, el LUCC presente depende del pasadoinmediato del uso y ocupación del suelo siguiendo un comportamiento Markoviano. Fuera del PNSC, LUCC es aleatorio y no sigue un proceso Markoviano. Estimativas del LUCC para el ano de 2006 son presentadas para el área dentro del PNSC. Estos resultados refuerzan el papel del PNSC como una herramienta indispensable para preservar la estabilidad del LUCC y garantizar sus funciones.

Open-Ended Science Inquiry in Lower Secondary School: Are Students' Learning Needs Being Met?

Science.gov (United States)

Whannell, Robert; Quinn, Fran; Taylor, Subhashni; Harris, Katherine; Cornish, Scott; Sharma, Manjula

2018-01-01

Australian science curricula have promoted the use of investigations that allow secondary students to engage deeply with the methods of scientific inquiry, through student-directed, open-ended investigations over an extended duration. This study presents the analysis of data relating to the frequency of completion and attitudes towards long…

The Role of Citizen Science in Risk Mitigation and Disaster Response: A Case Study of 2015 Nepalese Earthquake Using OpenStreetMap

Science.gov (United States)

Rieger, C.; Byrne, J. M.

2015-12-01

Citizen science includes networks of ordinary people acting as sensors, observing and recording information for science. OpenStreetMap is one such sensor network which empowers citizens to collaboratively produce a global picture from free geographic information. The success of this open source software is extended by the development of freely used open databases for the user community. Participating citizens do not require a high level of skill. Final results are processed by professionals following quality assurance protocols before map information is released. OpenStreetMap is not only the cheapest source of timely maps in many cases but also often the only source. This is particularly true in developing countries. Emergency responses to the recent earthquake in Nepal illustrates the value for rapidly updated geographical information. This includes emergency management, damage assessment, post-disaster response, and future risk mitigation. Local disaster conditions (landslides, road closings, bridge failures, etc.) were documented for local aid workers by citizen scientists working remotely. Satellites and drones provide digital imagery of the disaster zone and OpenStreetMap participants shared the data from locations around the globe. For the Nepal earthquake, OpenStreetMap provided a team of volunteers on the ground through their Humanitarian OpenStreetMap Team (HOT) which contribute data to the disaster response through smartphones and laptops. This, combined with global citizen science efforts, provided immediate geographically useful maps to assist aid workers, including the Red Cross and Canadian DART Team, and the Nepalese government. As of August 2014, almost 1.7 million users provided over 2.5 billion edits to the OpenStreetMap map database. Due to the increased usage of smartphones, GPS-enabled devices, and the growing participation in citizen science projects, data gathering is proving an effective way to contribute as a global citizen. This paper

Social.Water--Open Source Citizen Science Software for CrowdHydrology

Science.gov (United States)

Fienen, M. N.; Lowry, C.

2013-12-01

CrowdHydrology is a crowd-sourced citizen science project in which passersby near streams are encouraged to read a gage and send an SMS (text) message with the water level to a number indicated on a sign. The project was initially started using free services such as Google Voice, Gmail, and Google Maps to acquire and present the data on the internet. Social.Water is open-source software, using Python and JavaScript, that automates the acquisition, categorization, and presentation of the data. Open-source objectives pervade both the project and the software as the code is hosted at Github, only free scripting codes are used, and any person or organization can install a gage and join the CrowdHydrology network. In the first year, 10 sites were deployed in upstate New York, USA. In the second year, expansion to 44 sites throughout the upper Midwest USA was achieved. Comparison with official USGS and academic measurements have shown low error rates. Citizen participation varies greatly from site to site, so surveys or other social information is sought for insight into why some sites experience higher rates of participation than others.

Family Open House

Science.gov (United States)

Search Family Open House Join us for an afternoon of science fun. The Fermilab Family Open House is a party for children of all ages to learn about the world of physics. The Open House is supported by Open House? Check out our YouTube video to learn more! Explore physics concepts with hands-on

Global forces and local currents in Argentina's science policy crossroads: restricted access or open knowledge

Directory of Open Access Journals (Sweden)

Horacio Javier Etchichury

2014-11-01

Full Text Available The article describes the tensions between two competing approaches to scientific policy in Argentina. The traditional vision favors autonomous research. The neoliberal conception fosters the link between science and markets. In the past few years, a neodevelopmentalist current also tries to stress relevance of scientific research. Finally, the article describes how the Open Access movement has entered the debate. The World Bank intervention and the human rights dimension of the question are discussed in depth. The article introduces the notion of open knowledge as a guiding criterion to design a human-rights based scientific policy.

Open science resources for the discovery and analysis of Tara Oceans data.

Science.gov (United States)

Pesant, Stéphane; Not, Fabrice; Picheral, Marc; Kandels-Lewis, Stefanie; Le Bescot, Noan; Gorsky, Gabriel; Iudicone, Daniele; Karsenti, Eric; Speich, Sabrina; Troublé, Romain; Dimier, Céline; Searson, Sarah

2015-01-01

The Tara Oceans expedition (2009-2013) sampled contrasting ecosystems of the world oceans, collecting environmental data and plankton, from viruses to metazoans, for later analysis using modern sequencing and state-of-the-art imaging technologies. It surveyed 210 ecosystems in 20 biogeographic provinces, collecting over 35,000 samples of seawater and plankton. The interpretation of such an extensive collection of samples in their ecological context requires means to explore, assess and access raw and validated data sets. To address this challenge, the Tara Oceans Consortium offers open science resources, including the use of open access archives for nucleotides (ENA) and for environmental, biogeochemical, taxonomic and morphological data (PANGAEA), and the development of on line discovery tools and collaborative annotation tools for sequences and images. Here, we present an overview of Tara Oceans Data, and we provide detailed registries (data sets) of all campaigns (from port-to-port), stations and sampling events.

Open Science: Open source licenses in scientific research

OpenAIRE

Guadamuz, Andres

2006-01-01

The article examines the validity of OSS (open source software) licenses for scientific, as opposed to creative works. It draws on examples of OSS licenses to consider their suitability for the scientific community and scientific research.

Investigating the Impact of Human Activity on Land Use/Cover Change in China’s Lijiang River Basin from the Perspective of Flow and Type of Population

Directory of Open Access Journals (Sweden)

Jun Li

2017-03-01

Full Text Available Exploring how human activity impacts land use/cover change (LUCC is a hot research topic in the field of geography and sustainability management. Researchers have primarily used socioeconomic variables to measure human activity. However, the human activity indexes mainly based on socioeconomic variables have a spatial resolution that is coarser than traditional LUCC datasets, which hinders a deep and comprehensive analysis. In view of these problems, we selected China’s Lijiang River Basin as our study area and proposed the use of GPS trajectory data for analyzing the impact of human activity on LUCC from two perspectives: (1 Type of population: we used the kernel density estimation method to extract the spatial distribution of activity intensity of local residents and tourists, investigated their correlation with the LUCC result, and found these two populations have different impacts on each land cover; (2 Flow of population: we used the Density-Based Spatial Clustering of Applications with Noise (DBSCAN algorithm and a network analysis method to build a flow network of population from raw trajectories, conducted regression analysis with LUCC, and found that the flow of population is an important factor driving LUCC and is sometimes a more important factor than the static distribution of the population. Experimental results validated that the proposed method can be used to uncover the impact mechanism of human activity on LUCC at fine-grained scales and provide more accurate planning and instructions for sustainability management.

Overview: Routes to Open Access

OpenAIRE

Tullney, Marco; van Wezenbeek, Wilma

2017-01-01

Slides of an overview presentation given at a CESAER workshop on Open Access, February 2nd, 2017, in Brussels Cover major routes to more open access as discussed in the Task Force Open Science of CESAER: (national) open access strategies open access mandates open access incentives open access awareness open access publishing open access infrastructure

Spatial and temporal assessment of driving and conditioning factors and their impact on land use / land cover change in the Xiangxi Catchment, Three Gorges Region

Science.gov (United States)

Seeber, Christoph; Hartmann, Heike; Xiang, Wei; King, Lorenz

2010-05-01

Land use / land cover change (LUCC) is the most important human alteration of the earth's surface and is primarily studied in cases where it leads to severe environmental problems. The construction of the Three Gorges Dam on the Yangtze River in China has an extensive impact on the ecosystems and the local population. To assess its impact, the Xiangxi Catchment is taken as an example. The outlet of the Xiangxi River, a northern tributary of the Yangtze River, is located about 40 km upstream of the Three Gorges Dam. Due to the loss of fertile arable land and residential land which is mainly induced by the inundation and measures of resettlement, enormous LUCC is observed in the study area by depicting the land use / land cover by classification of LandsatTM data retrieved in 1987 and 2007. LUCC in the Xiangxi Catchment during this period can generally be characterized as decrease of cultivated land, increase of woodland and fallow land, and a shift in cropping from traditional smallholder farming to the establishment of citrus orchards, which are implemented as cash crops. Not only the inundation and the resettlement have an impact on LUCC, also the newly built and improved traffic infrastructure, growth of urban structures and land use policies in terms of environmental protection are expected to play an important role concerning LUCC. To assess the spatial and temporal impact of influencing factors, a LUCC gradient is generated based on post-classification change analysis of multispectral data. Furthermore, inter-stages between 1987 and 2007 have to be examined, to reach for a higher temporal resolution, which shall help to figure out temporal relationships between LUCC and the occurrence of driving factors. Once influence factors and and their spatial and temporal impacts are identified, a basis for predicting LUCC in the future for is provided for this area.

The effects of blogs versus dialogue journals on open-response writing scores and attitudes of grade eight science students

Science.gov (United States)

Erickson, Diane K.

Today's students have grown up surrounded by technology. They use cell phones, word processors, and the Internet with ease, talking with peers in their community and around the world through e-mails, chatrooms, instant messaging, online discussions, and weblogs ("blogs"). In the midst of this technological explosion, adolescents face a growing need for strong literacy skills in all subject areas for achievement in school and on mandated state and national high stakes tests. The purpose of this study was to examine the use of blogs as a tool for improving open-response writing in the secondary science classroom in comparison to the use of handwritten dialogue journals. The study used a mixed-method approach, gathering both quantitative and qualitative data from 94 students in four eighth-grade science classes. Two classes participated in online class blogs where they posted ideas about science and responded to the ideas of other classmates. Two classes participated in handwritten dialogue journals, writing ideas about science and exchanging journals to respond to the ideas of classmates. The study explored these research questions: Does the use of blogs, as compared to the use of handwritten dialogue journals, improve the open-response writing scores of eighth grade science students? How do students describe their experience using blogs to study science as compared to students using handwritten dialogue journals? and How do motivation, self-efficacy, and community manifest themselves in students who use blogs as compared to students who use handwritten dialogue journals? The quantitative aspect of the study used data from pre- and post-tests and from a Likert-scale post-survey. The pre- and post-writing on open-response science questions were scored using the Massachusetts Comprehensive Assessment System (MCAS) open-response scoring rubric. The study found no statistically significant difference in the writing scores between the blog group and the dialogue journal

Spheres of Knowledge that Require Open-mindedness and Open Data

Science.gov (United States)

Branch, B. D.

2009-05-01

The progress of social knowledge is impeded if not paralyzed at present by two fundamental factors, one impinging from knowledge without, and the other operating within the world of science itself' (Mannheim, Wirth, and Shils, p. xi). Hence, a Sphere of Knowledge (SK) defined here as a pseudo-ontology, may require a societal open-mindedness as defined by Dewey (1912). With professional open-mindedness and open data use, such social constructs may bridge and build relations towards efficient and effective societal problem solving. Open data use is defined where information has to be gathered from many sources to provided input for latter decision-making in the public interest. Here, spatial thinking may be the heart of data collection, analysis, and reporting that sustains an informatics experience among all parts of society. Here, at risk may be human survival and sustainability if policy and politics has hindered scientific or evidence-based transfer. Executive Order 12096, Coordinating Geographical Data Acquisition and Access: The National Spatial Data Infrastructure, by the federal government in 1994, may be an example of an informatics gap of knowledge where a federal mandate is not being connected to geosciences tools and community leaders that could benefit an open society. Critical in a SK is how an open society makes effective decisions if the issues it faces are new with unpredictable outcomes. Policy and politics should not impede the scientific or evidence based knowledge transfer but should be a root of democratic tools. Policy development and implementation should reflect such complexities' (Gardner, et al, 2003, p. 2). Conceptually, a SK may be too broad for any one disciplinary to address effectively as a next generation concern. The demand for deep integration of scientific data within and between disciplines is also growing, as larger and broader science questions are becoming more common. Concurrent with the growing demand for next generation

Neue Aufgaben für wissenschaftliche Bibliotheken: Das Beispiel Open Science Lab

Directory of Open Access Journals (Sweden)

Lambert Heller

2015-10-01

Full Text Available Vor dem Hintergrund des Aufkommens vieler neuer digitaler Werkzeuge und Methoden zur Unterstützung des wissenschaftlichen Arbeitens wird seit etwa fünf Jahren unter wissenschaftlichen Bibliothekaren in Deutschland immer häufiger über Innovationsmanagement diskutiert. Wie lassen sich relevante Trends und Herausforderungen rechtzeitig erkennen und mit den begrenzten Ressourcen einer Einrichtung des öffentlichen Dienstes adäquat aufgreifen, bis hin zu einer Veränderung der Bibliotheksstrategie? Der Beitrag behandelt das Modell des an der Technischen Informationsbibliothek Hannover (TIB 2013 ins Leben gerufenen Open Science Lab. Unter Leitung des Autors werden Trends beobachtet und aufgegriffen, um in enger Zusammenarbeit mit Wissenschaftlern und Wissenschaftlerinnen neue digitale Werkzeuge und Methoden zu erproben, eine neue Informationspraxis zu kultivieren und daraus Innovationen für das Dienste-Spektrum der Bibliothek abzuleiten. Dies wird beispielhaft anhand der beiden Schwerpunktthemen kollaboratives Schreiben sowie linked-data-basierte Forschungsinformationssysteme (FIS geschildert und diskutiert. Given the rise of many new digital tools and methods for supporting scientific work, the last five years have seen a lot of discussion amongst German academic librarians about innovation management. How can we discover relevant trends and challenges in time and respond to them adequately up to the point of changing whole library strategies, despite the limited resources of a public sector institution? The paper presents the model of the Open Science Lab which was set up at the German National Library of Science and Technology (TIB Hannover in 2013. Under the direction of the author and in close collaboration with scientific communities, the lab group keeps track of trends and selects some of them in order to try out new tools and methods. The ultimate aim is to cultivate new information practices and develop new, innovative

Capacity Building in Open Medical Record System (OpenMRS) in ...

International Development Research Centre (IDRC) Digital Library (Canada)

Capacity Building in Open Medical Record System (OpenMRS) in Rwanda ... Partners in Health (PIH), an international nongovernmental organization, has demonstrated the usefulness of ... Journal articles ... will fund social science, population and public health, and health systems research relevant to the emerging crisis.

Analysis of the current use, benefit, and value of the Open Science Grid

International Nuclear Information System (INIS)

Pordes, R; Weichel, J

2010-01-01

The Open Science Grid usage has ramped up more than 25% in the past twelve months due to both the increase in throughput of the core stakeholders - US LHC, LIGO and Run II - and increase in usage by non-physics communities. It is important to understand the value collaborative projects, such as the OSG, contribute to the scientific community. This needs to be cognizant of the environment of commercial cloud offerings, the evolving and maturing middleware for grid based distributed computing, and the evolution in science and research dependence on computation. We present a first categorization of OSG value and analysis across several different aspects of the Consortium's goals and activities. And lastly, we presents some of the upcoming challenges of LHC data analysis ramp up and our ongoing contributions to the World Wide LHC Computing Grid.

Analysis of the Current Use, Benefit, and Value of the Open Science Grid

Energy Technology Data Exchange (ETDEWEB)

Pordes, R.; /Fermilab

2009-04-01

The Open Science Grid usage has ramped up more than 25% in the past twelve months due to both the increase in throughput of the core stakeholders - US LHC, LIGO and Run II - and increase in usage by nonphysics communities. It is important to understand the value collaborative projects, such as the OSG, contribute to the scientific community. This needs to be cognizant of the environment of commercial cloud offerings, the evolving and maturing middleware for grid based distributed computing, and the evolution in science and research dependence on computation. We present a first categorization of OSG value and analysis across several different aspects of the Consortium's goals and activities. And lastly, we presents some of the upcoming challenges of LHC data analysis ramp up and our ongoing contributions to the World Wide LHC Computing Grid.

Accelerating target discovery using pre-competitive open science-patients need faster innovation more than anyone else.

Science.gov (United States)

Low, Eric; Bountra, Chas; Lee, Wen Hwa

2016-01-01

We are experiencing a new era enabled by unencumbered access to high quality data through the emergence of open science initiatives in the historically challenging area of early stage drug discovery. At the same time, many patient-centric organisations are taking matters into their own hands by participating in, enabling and funding research. Here we present the rationale behind the innovative partnership between the Structural Genomics Consortium (SGC)-an open, pre-competitive pre-clinical research consortium and the research-focused patient organisation Myeloma UK to create a new, comprehensive platform to accelerate the discovery and development of new treatments for multiple myeloma.

Developing Healthcare Data Analytics APPs with Open Data Science Tools.

Science.gov (United States)

Hao, Bibo; Sun, Wen; Yu, Yiqin; Xie, Guotong

2017-01-01

Recent advances in big data analytics provide more flexible, efficient, and open tools for researchers to gain insight from healthcare data. Whilst many tools require researchers to develop programs with programming languages like Python, R and so on, which is not a skill set grasped by many researchers in the healthcare data analytics area. To make data science more approachable, we explored existing tools and developed a practice that can help data scientists convert existing analytics pipelines to user-friendly analytics APPs with rich interactions and features of real-time analysis. With this practice, data scientists can develop customized analytics pipelines as APPs in Jupyter Notebook and disseminate them to other researchers easily, and researchers can benefit from the shared notebook to perform analysis tasks or reproduce research results much more easily.

A Survey of Physical Sciences, Engineering and Mathematics Faculty Regarding Author Fees in Open Access Journals

Science.gov (United States)

Cusker, Jeremy; Rauh, Anne E.

2014-01-01

Discussions of the potential of open access publishing frequently must contend with the skepticism of research authors regarding the need to pay author fees (also known as publication fees). With that in mind, the authors undertook a survey of faculty, postdocs, and graduate students in physical science, mathematics, and engineering fields at two…

Co-Creation and Open Innovation: Systematic Literature Review

Science.gov (United States)

Ramírez, María-Soledad; García-Peñalvo, Francisco-José

2018-01-01

Open science, as a common good, opens possibilities for the development of nations, through innovations and collaborative constructions, which help to democratize knowledge. Advances in this area are still emerging, and the open science, co-creation of knowledge and open innovation triangle, is presented as an opportunity to generate an original…

Global OpenSearch

Science.gov (United States)

Newman, D. J.; Mitchell, A. E.

2015-12-01

At AGU 2014, NASA EOSDIS demonstrated a case-study of an OpenSearch framework for Earth science data discovery. That framework leverages the IDN and CWIC OpenSearch API implementations to provide seamless discovery of data through the 'two-step' discovery process as outlined by the Federation for Earth Sciences (ESIP) OpenSearch Best Practices. But how would an Earth Scientist leverage this framework and what are the benefits? Using a client that understands the OpenSearch specification and, for further clarity, the various best practices and extensions, a scientist can discovery a plethora of data not normally accessible either by traditional methods (NASA Earth Data Search, Reverb, etc) or direct methods (going to the source of the data) We will demonstrate, via the CWICSmart web client, how an earth scientist can access regional data on a regional phenomena in a uniform and aggregated manner. We will demonstrate how an earth scientist can 'globalize' their discovery. You want to find local data on 'sea surface temperature of the Indian Ocean'? We can help you with that. 'European meteorological data'? Yes. 'Brazilian rainforest satellite imagery'? That too. CWIC allows you to get earth science data in a uniform fashion from a large number of disparate, world-wide agencies. This is what we mean by Global OpenSearch.

Should Research Always be OPEN

OpenAIRE

Taylor, Mike

2014-01-01

"If I have seen further it is by standing on the shoulders of giants", said Isaac Newton. Since the earliest days of science, progress has always been achieved by the free exchange and re-use of ideas. Understanding this, scientists have always leaned in the direction of openness. Science outside of trade secrets and state secrets has a natural tendency to be open. Until recently, the principle barrier to sharing science has been the logistic difficulty of printing and distributing copies...

The CEDPS troubleshooting architecture and deployment on the open science grid

International Nuclear Information System (INIS)

Tierney, Brian L; Gunter, Dan; Schopf, Jennifer M

2007-01-01

Tracking failures and poor performance across a widely distributed system of resources has proven challenging for many ongoing DOE applications. An example is the Open Science Grid (OSG) project, which currently experiences a roughly 15% job failure rate. This can be an issue not only for Grid computing but for anyone performing large-scale data transfers to remote machines because of the large number of interconnected components and services. As part of the Center for Enabling Distributed Petascale Science (CEDPS) project we have been building an infrastructure to work with current middleware and existing system tools to more easily track failures and discover anomalous behavior. This consists of a common logging format, the extension of syslog-ng for centralized collection of data, a data summarizer to more easily manage the volume of logging, and an anomaly detection system that can connect to a warning system when unexpected behaviors occur. We are currently working with OSG to deploy a prototype of the full system. The initial logs gathered will be used to extend the analysis tools and to increase the reliability of the services for the SciDAC end user community

Running an open experiment: transparency and reproducibility in soil and ecosystem science

Science.gov (United States)

Bond-Lamberty, Ben; Peyton Smith, A.; Bailey, Vanessa

2016-08-01

Researchers in soil and ecosystem science, and almost every other field, are being pushed—by funders, journals, governments, and their peers—to increase transparency and reproducibility of their work. A key part of this effort is a move towards open data as a way to fight post-publication data loss, improve data and code quality, enable powerful meta- and cross-disciplinary analyses, and increase trust in, and the efficiency of, publicly-funded research. Many scientists however lack experience in, and may be unsure of the benefits of, making their data and fully-reproducible analyses publicly available. Here we describe a recent ‘open experiment’, in which we documented every aspect of a soil incubation online, making all raw data, scripts, diagnostics, final analyses, and manuscripts available in real time. We found that using tools such as version control, issue tracking, and open-source statistical software improved data integrity, accelerated our team’s communication and productivity, and ensured transparency. There are many avenues to improve scientific reproducibility and data availability, of which is this only one example, and it is not an approach suited for every experiment or situation. Nonetheless, we encourage the communities in our respective fields to consider its advantages, and to lead rather than follow with respect to scientific reproducibility, transparency, and data availability.

Open Research Data: From Vision to Practice

CERN Document Server

Pampel, Heinz

2014-01-01

“To make progress in science, we need to be open and share.” This quote from Neelie Kroes (2012), vice president of the European Commission describes the growing public demand for an Open Science. Part of Open Science is, next to Open Access to peer-reviewed publications, the Open Access to research data, the basis of scholarly knowledge. The opportunities and challenges of Data Sharing are discussed widely in the scholarly sector. The cultures of Data Sharing differ within the scholarly disciplines. Well advanced are for example disciplines like biomedicine and earth sciences. Today, more and more funding agencies require a proper Research Data Management and the possibility of data re-use. Many researchers often see the potential of Data Sharing, but they act cautiously. This situation shows a clear ambivalence between the demand for Data Sharing and the current practice of Data Sharing. Starting from a baseline study on current discussions, practices and developments the article describe the challenges...

The Open Microscopy Environment: open image informatics for the biological sciences

Science.gov (United States)

Blackburn, Colin; Allan, Chris; Besson, Sébastien; Burel, Jean-Marie; Carroll, Mark; Ferguson, Richard K.; Flynn, Helen; Gault, David; Gillen, Kenneth; Leigh, Roger; Leo, Simone; Li, Simon; Lindner, Dominik; Linkert, Melissa; Moore, Josh; Moore, William J.; Ramalingam, Balaji; Rozbicki, Emil; Rustici, Gabriella; Tarkowska, Aleksandra; Walczysko, Petr; Williams, Eleanor; Swedlow, Jason R.

2016-07-01

Despite significant advances in biological imaging and analysis, major informatics challenges remain unsolved: file formats are proprietary, storage and analysis facilities are lacking, as are standards for sharing image data and results. While the open FITS file format is ubiquitous in astronomy, astronomical imaging shares many challenges with biological imaging, including the need to share large image sets using secure, cross-platform APIs, and the need for scalable applications for processing and visualization. The Open Microscopy Environment (OME) is an open-source software framework developed to address these challenges. OME tools include: an open data model for multidimensional imaging (OME Data Model); an open file format (OME-TIFF) and library (Bio-Formats) enabling free access to images (5D+) written in more than 145 formats from many imaging domains, including FITS; and a data management server (OMERO). The Java-based OMERO client-server platform comprises an image metadata store, an image repository, visualization and analysis by remote access, allowing sharing and publishing of image data. OMERO provides a means to manage the data through a multi-platform API. OMERO's model-based architecture has enabled its extension into a range of imaging domains, including light and electron microscopy, high content screening, digital pathology and recently into applications using non-image data from clinical and genomic studies. This is made possible using the Bio-Formats library. The current release includes a single mechanism for accessing image data of all types, regardless of original file format, via Java, C/C++ and Python and a variety of applications and environments (e.g. ImageJ, Matlab and R).

Open Veterinary Journal

African Journals Online (AJOL)

Open Veterinary Journal is a peer reviewed international open access online and printed journal that publishes high-quality original research articles, reviews, short communications and case reports dedicated to all aspects of veterinary sciences and its related subjects. Other websites associated with this journal: ...

Open Science Meets Stem Cells: A New Drug Discovery Approach for Neurodegenerative Disorders.

Science.gov (United States)

Han, Chanshuai; Chaineau, Mathilde; Chen, Carol X-Q; Beitel, Lenore K; Durcan, Thomas M

2018-01-01

Neurodegenerative diseases are a challenge for drug discovery, as the biological mechanisms are complex and poorly understood, with a paucity of models that faithfully recapitulate these disorders. Recent advances in stem cell technology have provided a paradigm shift, providing researchers with tools to generate human induced pluripotent stem cells (iPSCs) from patient cells. With the potential to generate any human cell type, we can now generate human neurons and develop "first-of-their-kind" disease-relevant assays for small molecule screening. Now that the tools are in place, it is imperative that we accelerate discoveries from the bench to the clinic. Using traditional closed-door research systems raises barriers to discovery, by restricting access to cells, data and other research findings. Thus, a new strategy is required, and the Montreal Neurological Institute (MNI) and its partners are piloting an "Open Science" model. One signature initiative will be that the MNI biorepository will curate and disseminate patient samples in a more accessible manner through open transfer agreements. This feeds into the MNI open drug discovery platform, focused on developing industry-standard assays with iPSC-derived neurons. All cell lines, reagents and assay findings developed in this open fashion will be made available to academia and industry. By removing the obstacles many universities and companies face in distributing patient samples and assay results, our goal is to accelerate translational medical research and the development of new therapies for devastating neurodegenerative disorders.

The 2015 Bioinformatics Open Source Conference (BOSC 2015).

Science.gov (United States)

Harris, Nomi L; Cock, Peter J A; Lapp, Hilmar; Chapman, Brad; Davey, Rob; Fields, Christopher; Hokamp, Karsten; Munoz-Torres, Monica

2016-02-01

The Bioinformatics Open Source Conference (BOSC) is organized by the Open Bioinformatics Foundation (OBF), a nonprofit group dedicated to promoting the practice and philosophy of open source software development and open science within the biological research community. Since its inception in 2000, BOSC has provided bioinformatics developers with a forum for communicating the results of their latest efforts to the wider research community. BOSC offers a focused environment for developers and users to interact and share ideas about standards; software development practices; practical techniques for solving bioinformatics problems; and approaches that promote open science and sharing of data, results, and software. BOSC is run as a two-day special interest group (SIG) before the annual Intelligent Systems in Molecular Biology (ISMB) conference. BOSC 2015 took place in Dublin, Ireland, and was attended by over 125 people, about half of whom were first-time attendees. Session topics included "Data Science;" "Standards and Interoperability;" "Open Science and Reproducibility;" "Translational Bioinformatics;" "Visualization;" and "Bioinformatics Open Source Project Updates". In addition to two keynote talks and dozens of shorter talks chosen from submitted abstracts, BOSC 2015 included a panel, titled "Open Source, Open Door: Increasing Diversity in the Bioinformatics Open Source Community," that provided an opportunity for open discussion about ways to increase the diversity of participants in BOSC in particular, and in open source bioinformatics in general. The complete program of BOSC 2015 is available online at http://www.open-bio.org/wiki/BOSC_2015_Schedule.

The Peer Reviewers’ Openness Initiative: Incentivizing open research practices through peer review

NARCIS (Netherlands)

R.D. Morey (Richard D.); C.D. Chambers (Christopher D.); P.J. Etchells (Peter J.); C.R. Harris (Christine R.); R. Hoekstra (Rink); D. Lakens (Daniël); S. Lewandowsky (Stephan); C.C. Morey (Candice Coker); D.P. Newman (Daniel P.); F.D. Schönbrodt (Felix D.); W. Vanpaemel (Wolf); E.J. Wagenmakers (Eric-Jan); R.A. Zwaan (Rolf)

2016-01-01

textabstractOpenness is one of the central values of science. Open scientific practices such as sharing data, materials and analysis scripts alongside published articles have many benefits, including easier replication and extension studies, increased availability of data for theory-building and

The integration of open access journals in the scholarly communication system: Three science fields

DEFF Research Database (Denmark)

Faber Frandsen, Tove

2009-01-01

across disciplines. This study is an analysis of the citing behaviour in journals within three science fields: biology, mathematics, and pharmacy and pharmacology. It is a statistical analysis of OAJs as well as non-OAJs including both the citing and cited side of the journal to journal citations......The greatest number of open access journals (OAJs) is found in the sciences and their influence is growing. However, there are only a few studies on the acceptance and thereby integration of these OAJs in the scholarly communication system. Even fewer studies provide insight into the differences....... The multivariate linear regression reveals many similarities in citing behaviour across fields and media. But it also points to great differences in the integration of OAJs. The integration of OAJs in the scholarly communication system varies considerably across fields. The implications for bibliometric research...

Attribution of hydrological change in Heihe River Basin to climate and land use change in the past three decades

Science.gov (United States)

Luo, Kaisheng; Tao, Fulu; Moiwo, Juana P.; Xiao, Dengpan

2016-01-01

The contributions of climate and land use change (LUCC) to hydrological change in Heihe River Basin (HRB), Northwest China were quantified using detailed climatic, land use and hydrological data, along with the process-based SWAT (Soil and Water Assessment Tool) hydrological model. The results showed that for the 1980s, the changes in the basin hydrological change were due more to LUCC (74.5%) than to climate change (21.3%). While LUCC accounted for 60.7% of the changes in the basin hydrological change in the 1990s, climate change explained 57.3% of that change. For the 2000s, climate change contributed 57.7% to hydrological change in the HRB and LUCC contributed to the remaining 42.0%. Spatially, climate had the largest effect on the hydrology in the upstream region of HRB, contributing 55.8%, 61.0% and 92.7% in the 1980s, 1990s and 2000s, respectively. LUCC had the largest effect on the hydrology in the middle-stream region of HRB, contributing 92.3%, 79.4% and 92.8% in the 1980s, 1990s and 2000s, respectively. Interestingly, the contribution of LUCC to hydrological change in the upstream, middle-stream and downstream regions and the entire HRB declined continually over the past 30 years. This was the complete reverse (a sharp increase) of the contribution of climate change to hydrological change in HRB. PMID:27647454

The Peer Reviewers’ Openness Initiative: Incentivising Open Research Practices through Peer Review

NARCIS (Netherlands)

Morey, Richard D.; Chambers, Christopher D.; Etchells, Peter J.; Harris, Christine R; Hoekstra, Rink; Lakens, Daniël; Lewandowsky, Stephan; Morey, Candice Coker; Newman, Daniel P.; Schönbrodt, Felix; Vanpaemel, Wolf; Wagenmakers, Eric-Jan; Zwaan, Rolf A.

2016-01-01

Openness is one of the central values of science. Open scientific practices such as sharing data, materials, and analysis scripts alongside published articles have many benefits, including easier replication and extension studies, increased availability of data for theory-building and meta-analysis,

The peer reviewers' openness initiative : incentivizing open research practices through peer review

NARCIS (Netherlands)

Morey, R.; Chambers, C.; Etchells, P.; Harris, C.; Hoekstra, R.; Lakens, D.; Lewandowsky, S.; Morey, C.; Newman, D.; Schönbrodt, F.; Vanpaemel, W.; Wagenmakers, E.-J.; Zwaan, R.

2016-01-01

Openness is one of the central values of science. Open scientific practices such as sharing data, materials and analysis scripts alongside published articles have many benefits, including easier replication and extension studies, increased availability of data for theory-building and meta-analysis,

The Peer Reviewers’ Openness Initiative : incentivizing open research practices through peer review

NARCIS (Netherlands)

Morey, R.D.; Chambers, C.D.; Etchells, P.J.; Harris, C.R.; Hoekstra, R.; Lakens, D.; Lewandowsky, S.; Morey, C.C.; Newman, D.P.; Schönbrodt, F.D.; Vanpaemel, W.; Wagenmakers, E.-J.; Zwaan, R.A.

2016-01-01

Openness is one of the central values of science. Open scientific practices such as sharing data, materials and analysis scripts alongside published articles have many benefits, including easier replication and extension studies, increased availability of data for theory-building and meta-analysis,

Publishing in Open Access Education Journals: The Authors' Perspectives

Science.gov (United States)

Coonin, Bryna; Younce, Leigh M.

2010-01-01

Open access publishing is now an accepted method of scholarly communication. However, the greatest traction for open access publishing thus far has been in the sciences. Penetration of open access publishing has been much slower among the social sciences. This study surveys 309 authors from recent issues of open access journals in education to…

Geosciences: An Open Access Journal on Earth and Planetary Sciences and Their Interdisciplinary Approaches

Directory of Open Access Journals (Sweden)

Jesus Martinez-Frias

2011-05-01

Full Text Available On behalf of the Editorial Board and the editorial management staff of MDPI, it is my great pleasure to introduce this new journal Geosciences. Geosciences is an international, peer-reviewed open access journal, which publishes original papers, rapid communications, technical notes and review articles, and discussions about all interdisciplinary aspects of the earth and planetary sciences. Geosciences may also include papers presented at scientific conferences (proceedings or articles on a well defined topic assembled by individual editors or organizations/institutions (special publications.

The Open Science Grid – Support for Multi-Disciplinary Team Science – the Adolescent Years

CERN Multimedia

CERN. Geneva

2012-01-01

As it enters adolescence the Open Science Grid (OSG) is bringing a maturing fabric of Distributed High Throughput Computing (DHTC) services that supports an expanding HEP community to an increasingly diverse spectrum of domain scientists. Working closely with researchers on campuses throughout the US and in collaboration with national cyberinfrastructure initiatives, we transform their computing environment through new concepts, advanced tools and deep experience. We discuss examples of these including: the pilot-job overlay concepts and technologies now in use throughout OSG and delivering 1.4 Million CPU hours/day; the role of campus infrastructures- built out from concepts of sharing across multiple local faculty clusters (made good use of already by many of the HEP Tier-2 sites in the US); the work towards the use of clouds and access to high throughput parallel (multi-core and GPU) compute resources; and the progress we are making towards meeting the data management and access needs of non-HEP communiti...

The 2016 Bioinformatics Open Source Conference (BOSC).

Science.gov (United States)

Harris, Nomi L; Cock, Peter J A; Chapman, Brad; Fields, Christopher J; Hokamp, Karsten; Lapp, Hilmar; Muñoz-Torres, Monica; Wiencko, Heather

2016-01-01

Message from the ISCB: The Bioinformatics Open Source Conference (BOSC) is a yearly meeting organized by the Open Bioinformatics Foundation (OBF), a non-profit group dedicated to promoting the practice and philosophy of Open Source software development and Open Science within the biological research community. BOSC has been run since 2000 as a two-day Special Interest Group (SIG) before the annual ISMB conference. The 17th annual BOSC ( http://www.open-bio.org/wiki/BOSC_2016) took place in Orlando, Florida in July 2016. As in previous years, the conference was preceded by a two-day collaborative coding event open to the bioinformatics community. The conference brought together nearly 100 bioinformatics researchers, developers and users of open source software to interact and share ideas about standards, bioinformatics software development, and open and reproducible science.

Science Teaching in Science Education

Science.gov (United States)

Callahan, Brendan E.; Dopico, Eduardo

2016-01-01

Reading the interesting article "Discerning selective traditions in science education" by Per Sund, which is published in this issue of "CSSE," allows us to open the discussion on procedures for teaching science today. Clearly there is overlap between the teaching of science and other areas of knowledge. However, we must…

A New Open Access Journal of Marine Science and Engineering

Directory of Open Access Journals (Sweden)

Anthony S. Clare

2013-03-01

Full Text Available The oceans cover approximately 71% of the Earth’s surface and contain more than 97% of the planet’s water, representing over 100 times more liveable volume than the terrestrial habitat. Approximately fifty percent of the species on the planet occupy this ocean biome, much of which remains unexplored. The health and sustainability of the oceans are threatened by a combination of pressures associated with climate change and the ever-increasing demands we place on them for food, recreation, trade, energy and minerals. The biggest threat, however, is the pace of change to the oceans, e.g., ocean acidification, which is unprecedented in human history. Consequently, there has never been a greater need for the rapid and widespread dissemination of the outcomes of research aimed at improving our understanding of how the oceans work and solutions to their sustainable use. It is our hope that this new online, open-access Journal of Marine Science and Engineering will go some way to fulfilling this need. [...

Opening science: New publication forms in science

OpenAIRE

Scheliga, Kaja

2014-01-01

Digital technologies change how scientists access and process information and consequently impact publication forms in science. Even though the core of scientific publications has remained the same, established publication formats, such as the scientific paper or book, are succumbing to the transitions caused by digital technologies. At the same time, new online tools enable new publication forms, such as blogs, microblogs or wikis, to emerge. This article explores the changing and emerging p...

Where civics meets science: building science for the public good through Civic Science.

Science.gov (United States)

Garlick, J A; Levine, P

2017-09-01

Public understanding of science and civic engagement on science issues that impact contemporary life matter more today than ever. From the Planned Parenthood controversy, to the Flint water crisis and the fluoridation debate, societal polarization about science issues has reached dramatic levels that present significant obstacles to public discussion and problem solving. This is happening, in part, because systems built to support science do not often reward open-minded thinking, inclusive dialogue, and moral responsibility regarding science issues. As a result, public faith in science continues to erode. This review explores how the field of Civic Science can impact public work on science issues by building new understanding of the practices, influences, and cultures of science. Civic Science is defined as a discipline that considers science practice and knowledge as resources for civic engagement, democratic action, and political change. This review considers how Civic Science informs the roles that key participants-scientists, public citizens and institutions of higher education-play in our national science dialogue. Civic Science aspires to teach civic capacities, to inform the responsibilities of scientists engaged in public science issues and to inspire an open-minded, inclusive dialogue where all voices are heard and shared commitments are acknowledged. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Open Access von A bis Z

OpenAIRE

Stieg, Kerstin; Pavlovic, Karlo

2012-01-01

The glossary „Open Access from A to Z“ comprises essential key terms on Open Access such as arXiv, The Berlin Declaration on Open Access to Knowledge in the Sciences and Humanities, the Budapest Open Access Initiative (BOAI), Creative Commons (CC), the Directory of Open Access Books (DOAB), the Directory of Open Access Journals (DOAJ), the Directory of Open Access Repositories (OpenDOAR), the EU project Digital Repository Infrastructure Vision for European Research (DRIVER), the Finch Report,...

BlueSky ATC Simulator Project : An Open Data and Open Source Approach

NARCIS (Netherlands)

Hoekstra, J.M.; Ellerbroek, J.

2016-01-01

To advance ATM research as a science, ATM research results should be made more comparable. A possible way to do this is to share tools and data. This paper presents a project that investigates the feasibility of a fully open-source and open-data approach to air traffic simulation. Here, the first of

Developing scenarios to assess future landslide risks: a model-based approach applied to mountainous regions

Science.gov (United States)

Vacquie, Laure; Houet, Thomas

2016-04-01

In the last century, European mountain landscapes have experienced significant transformations. Natural and anthropogenic changes, climate changes, touristic and industrial development, socio-economic interactions, and their implications in terms of LUCC (land use and land cover changes) have directly influenced the spatial organization and vulnerability of mountain landscapes. This study is conducted as part of the SAMCO project founded by the French National Science Agency (ANR). It aims at developing a methodological approach, combining various tools, modelling platforms and methods, to identify vulnerable regions to landslide hazards accounting for futures LUCC. It presents an integrated approach combining participative scenarios and a LULC changes simulation models to assess the combined effects of LUCC and climate change on landslide risks in the Cauterets valley (French Pyrenees Mountains) up to 2100. Through vulnerability and risk mapping, the objective is to gather information to support landscape planning and implement land use strategies with local stakeholders for risk management. Four contrasting scenarios are developed and exhibit contrasting trajectories of socio-economic development. Prospective scenarios are based on national and international socio-economic contexts relying on existing assessment reports. The methodological approach integrates knowledge from local stakeholders to refine each scenario during their construction and to reinforce their plausibility and relevance by accounting for local specificities, e.g. logging and pastoral activities, touristic development, urban planning, etc. A process-based model, the Forecasting Scenarios for Mountains (ForeSceM) model, developed on the Dinamica Ego modelling platform is used to spatially allocate futures LUCC for each prospective scenario. Concurrently, a spatial decision support tool, i.e. the SYLVACCESS model, is used to identify accessible areas for forestry in scenario projecting logging

GSNL 2.0: leveraging on Open Science to promote science-based decision making in Disaster Risk Reduction

Science.gov (United States)

Salvi, Stefano; Rubbia, Giuliana; Abruzzese, Luigi

2017-04-01

In 2010 the GEO Geohazard Supersites and Natural Laboratories initiative (GSNL) launched the concept of a global partnership among the geophysical scientific community and the satellite and in situ data providers, aiming to promote scientific advancements in the knowledge of seismic and volcanic phenomena. The initial goal was successfully achieved, and many more new scientific results were obtained than it could have been possible if the Supersites had not existed (http://www.earthobservations.org/gsnl.php). At the same time the Supersites have demonstrated to be able to effectively support the rapid transfer of useful scientific information to the risk managers, exploiting the existing institutional relationships between the Supersite coordinators and the local decision makers. However, a more demanding call for action is given by the Sendai Framework 2015-2030 (outcome of the 2015 UN World Conference on Disaster Risk Reduction), where for the first time the knowledge of the risk components and the science based decision-making process are defined as top priorities for an effective DRR. There are evident possible synergies between the Sendai framework, GEO, the CEOS (Committee on Earth Observation Satellites), and GSNL, but for maximum benefit and effectiveness the latter needs to progress at a faster pace towards a full implementation of the Open Science approach to geohazard science. In the above global framework the Supersites can represent local test beds where to experiment coordination, collaboration and communication approaches and technological solutions tailored to the local situation, to ensure that the scientific community can contribute the information needed for the best possible decision making. This vision and the new developments of GSNL 2.0 have been approved by the GEO Program Board, and a clear roadmap has been set for the period 2017-2019. We will present the approach and the implementation plan at the conference.

Open Data in Biomedical Science: Policy Drivers and Recent ...

Science.gov (United States)

EPA's progress in implementing the open data initiatives first outlined in the 2009 Presidential memorandum on open government and more specifically regarding publications and data from publications in the 2013 Holdren memorandum. The presentation outlines the major points in both memorandums regarding open data, presents several (but not exhaustive) EPA initiatives on open data, some of which occurred will before both policy memorandums. The presentation concludes by outlining the initiatives to ensure public access to all EPA publications through PubMed Central and all publication-associated data through the Environmental Data Gateway and Data.gov. The purpose of this presentation is to present EPA's progress in implementing the open data initiatives first outlined in the 2009 Presidential memorandum on open government and more specifically regarding publications and data from publications in the 2013 Holdren memorandum.

An agent-based approach to model land-use change at a regional scale

NARCIS (Netherlands)

Valbuena, D.F.; Verburg, P.H.; Bregt, A.K.; Ligtenberg, A.

2010-01-01

Land-use/cover change (LUCC) is a complex process that includes actors and factors at different social and spatial levels. A common approach to analyse and simulate LUCC as the result of individual decisions is agent-based modelling (ABM). However, ABM is often applied to simulate processes at local

Spatio-temporal patterns of the effects of precipitation variability and land use/cover changes on long-term changes in sediment yield in the Loess Plateau, China

Science.gov (United States)

Gao, Guangyao; Zhang, Jianjun; Liu, Yu; Ning, Zheng; Fu, Bojie; Sivapalan, Murugesu

2017-09-01

Within China's Loess Plateau there have been concerted revegetation efforts and engineering measures since the 1950s aimed at reducing soil erosion and land degradation. As a result, annual streamflow, sediment yield, and sediment concentration have all decreased considerably. Human-induced land use/cover change (LUCC) was the dominant factor, contributing over 70 % of the sediment load reduction, whereas the contribution of precipitation was less than 30 %. In this study, we use 50-year time series data (1961-2011), showing decreasing trends in the annual sediment loads of 15 catchments, to generate spatio-temporal patterns in the effects of LUCC and precipitation variability on sediment yield. The space-time variability of sediment yield was expressed notionally as a product of two factors representing (i) the effect of precipitation and (ii) the fraction of treated land surface area. Under minimal LUCC, the square root of annual sediment yield varied linearly with precipitation, with the precipitation-sediment load relationship showing coherent spatial patterns amongst the catchments. As the LUCC increased and took effect, the changes in sediment yield pattern depended more on engineering measures and vegetation restoration campaign, and the within-year rainfall patterns (especially storm events) also played an important role. The effect of LUCC is expressed in terms of a sediment coefficient, i.e., the ratio of annual sediment yield to annual precipitation. Sediment coefficients showed a steady decrease over the study period, following a linear decreasing function of the fraction of treated land surface area. In this way, the study has brought out the separate roles of precipitation variability and LUCC in controlling spatio-temporal patterns of sediment yield at catchment scale.

An open experiment of a submilli-PIXE camera

International Nuclear Information System (INIS)

Matsuyama, S.; Ishii, K.; Yamazaki, H.; Iwasaki, S.; Tokai, Y.; Sugimoto, A.; Endo, H.; Ozawa, T.

1999-01-01

We have annually held an open experiment of PIXE analysis since 1996 to get people's understanding on nuclear technology and radiation science. Up to the present, more than 270 participants joined and enjoyed the open experiments. This year, we demonstrated performance of a submilli-PIXE camera and had sixty-nine participants in the open experiment of PIXE. Elemental spatial distribution images gave deep impression to the participants. Half of the participants were high school students since the open experiment of PIXE was held during the period of open campus of Tohoku University. About ten percents of the participants were junior high school students. Our open experiment of PIXE was very effective to arouse public interest in radiation science and nuclear technology. (author)

Performance of large open-top chambers for long-term field investigations of tree response to elevated carbon dioxide concentration

International Nuclear Information System (INIS)

Whitehead, D.; Hogan, K.P.; Rogers, G.N.D.; Byers, J.N.; Hunt, J.E.; McSeveny, T.M.; Hollinger, D.Y.; Dungan, R.J.; Earl, W.B.; Bourke, M.P.

1995-01-01

In preparation for an investigation of the effects of elevated carbondioxide (CO 2 ) concentration on the two tree species Pinus radiata D. Don and Nothofagus fusca (Hook. f. ) Oerst, the environmental conditions inside sixteen open-top chambers, of the design described by Heagle et al. (1989), were measured and compared with those outside. During a period in late summer, both air temperature and air saturation deficit were greater inside the chambers, with mean increases of 0.3 degreesC and 0.1 kPa, respectively. The increases were closely related to solar irradiance, reaching maximum differences for temperature and air saturation deficit of 4.3 degrees C and 0.8 kPa, respectively, when solar irradiance was greater than 1600 mu mol m -2 s -1 . The mean (± standard deviation) CO 2 concentrations for the ambient and elevated treatments were 362 ± 37 and 654 ± 69 mu mol mol -1 , respectively. However, the CO 2 concentration in the elevated treatment decreased as wind speed increased, owing to incursions of ambient air into the chambers. Transmittance of visible solar irradiance (400-700 nm) through the plastic wall material decreased by 7% after 1 year of exposure at the site. In cloudy conditions the mean transmittance of solar irradiance into the chambers was 81% and on clear days this decreased from 80% to 74% with increasing solar zenith angle. The ratio of diffuse to total solar irradiance in the chambers was 13% and 21% greater than that outside for cloudy and clear conditions, respectively. The implications of these differences on water use efficiency for the trees growing inside and outside the chamber are discussed. A cost effective system, built to separate the CO 2 required for the experiment from waste biogas, is described. This project is contributing to the Global Change and Terrestrial Ecosystems (GCTE) Core Research Programme by providing data on the long-term effects of elevated CO 2 concentration on the above and below-ground carbon balance for

DZero data-intensive computing on the Open Science Grid

International Nuclear Information System (INIS)

Abbott, B; Baranovski, A; Diesburg, M; Garzoglio, G; Mhashilkar, P; Kurca, T

2008-01-01

High energy physics experiments periodically reprocess data, in order to take advantage of improved understanding of the detector and the data processing code. Between February and May 2007, the DZero experiment has reprocessed a substantial fraction of its dataset. This consists of half a billion events, corresponding to about 100 TB of data, organized in 300,000 files. The activity utilized resources from sites around the world, including a dozen sites participating to the Open Science Grid consortium (OSG). About 1,500 jobs were run every day across the OSG, consuming and producing hundreds of Gigabytes of data. Access to OSG computing and storage resources was coordinated by the SAM-Grid system. This system organized job access to a complex topology of data queues and job scheduling to clusters, using a SAM-Grid to OSG job forwarding infrastructure. For the first time in the lifetime of the experiment, a data intensive production activity was managed on a general purpose grid, such as OSG. This paper describes the implications of using OSG, where all resources are granted following an opportunistic model, the challenges of operating a data intensive activity over such large computing infrastructure, and the lessons learned throughout the project

DZero data-intensive computing on the Open Science Grid

International Nuclear Information System (INIS)

Abbott, B.; Baranovski, A.; Diesburg, M.; Garzoglio, G.; Kurca, T.; Mhashilkar, P.

2007-01-01

High energy physics experiments periodically reprocess data, in order to take advantage of improved understanding of the detector and the data processing code. Between February and May 2007, the DZero experiment has reprocessed a substantial fraction of its dataset. This consists of half a billion events, corresponding to about 100 TB of data, organized in 300,000 files. The activity utilized resources from sites around the world, including a dozen sites participating to the Open Science Grid consortium (OSG). About 1,500 jobs were run every day across the OSG, consuming and producing hundreds of Gigabytes of data. Access to OSG computing and storage resources was coordinated by the SAM-Grid system. This system organized job access to a complex topology of data queues and job scheduling to clusters, using a SAM-Grid to OSG job forwarding infrastructure. For the first time in the lifetime of the experiment, a data intensive production activity was managed on a general purpose grid, such as OSG. This paper describes the implications of using OSG, where all resources are granted following an opportunistic model, the challenges of operating a data intensive activity over such large computing infrastructure, and the lessons learned throughout the project

Next-Generation Metrics: Responsible Metrics & Evaluation for Open Science

Energy Technology Data Exchange (ETDEWEB)

Wilsdon, J.; Bar-Ilan, J.; Peters, I.; Wouters, P.

2016-07-01

Metrics evoke a mixed reaction from the research community. A commitment to using data to inform decisions makes some enthusiastic about the prospect of granular, real-time analysis o of research and its wider impacts. Yet we only have to look at the blunt use of metrics such as journal impact factors, h-indices and grant income targets, to be reminded of the pitfalls. Some of the most precious qualities of academic culture resist simple quantification, and individual indicators often struggle to do justice to the richness and plurality of research. Too often, poorly designed evaluation criteria are “dominating minds, distorting behaviour and determining careers (Lawrence, 2007).” Metrics hold real power: they are constitutive of values, identities and livelihoods. How to exercise that power to more positive ends has been the focus of several recent and complementary initiatives, including the San Francisco Declaration on Research Assessment (DORA1), the Leiden Manifesto2 and The Metric Tide3 (a UK government review of the role of metrics in research management and assessment). Building on these initiatives, the European Commission, under its new Open Science Policy Platform4, is now looking to develop a framework for responsible metrics for research management and evaluation, which can be incorporated into the successor framework to Horizon 2020. (Author)

BioFed: federated query processing over life sciences linked open data.

Science.gov (United States)

Hasnain, Ali; Mehmood, Qaiser; Sana E Zainab, Syeda; Saleem, Muhammad; Warren, Claude; Zehra, Durre; Decker, Stefan; Rebholz-Schuhmann, Dietrich

2017-03-15

Biomedical data, e.g. from knowledge bases and ontologies, is increasingly made available following open linked data principles, at best as RDF triple data. This is a necessary step towards unified access to biological data sets, but this still requires solutions to query multiple endpoints for their heterogeneous data to eventually retrieve all the meaningful information. Suggested solutions are based on query federation approaches, which require the submission of SPARQL queries to endpoints. Due to the size and complexity of available data, these solutions have to be optimised for efficient retrieval times and for users in life sciences research. Last but not least, over time, the reliability of data resources in terms of access and quality have to be monitored. Our solution (BioFed) federates data over 130 SPARQL endpoints in life sciences and tailors query submission according to the provenance information. BioFed has been evaluated against the state of the art solution FedX and forms an important benchmark for the life science domain. The efficient cataloguing approach of the federated query processing system 'BioFed', the triple pattern wise source selection and the semantic source normalisation forms the core to our solution. It gathers and integrates data from newly identified public endpoints for federated access. Basic provenance information is linked to the retrieved data. Last but not least, BioFed makes use of the latest SPARQL standard (i.e., 1.1) to leverage the full benefits for query federation. The evaluation is based on 10 simple and 10 complex queries, which address data in 10 major and very popular data sources (e.g., Dugbank, Sider). BioFed is a solution for a single-point-of-access for a large number of SPARQL endpoints providing life science data. It facilitates efficient query generation for data access and provides basic provenance information in combination with the retrieved data. BioFed fully supports SPARQL 1.1 and gives access to the

Temporal and spatial changes of land use and landscape in a coal mining area in Xilingol grassland

Science.gov (United States)

Guan, Chunzhu; Zhang, Baolin; Li, Jiannan; Zhao, Junling

2017-01-01

Coal mining, particularly surface mining, inevitably disturbs land. According to Landsat images acquired over Xilingol grassland in 2005, 2009 and 2015, land uses were divided into seven classes, i. e., open stope, stripping area, waste-dump area, mine industrial area, farmland, urban area and the original landscape (grassland), using supervised classification and human-computer interactive interpretation. The overall classification accuracies were 97.72 %, 98.43 % and 96.73 %, respectively; the Kappa coefficients were 0.95, 0.97 and 0.95, respectively. Analysis on LUCC (Land Use and Cover Change) showed that surface coal mining disturbed grassland ecosystem: grassland decreased by 8661.15 hm2 in 2005-2015. The area and proportion of mining operation areas (open stope, stripping area, waste-dump area, mine industrial field) increased, but those of grassland decreased continuously. Transfer matrix of land use changes showed that waste-dump had the largest impacts in mining disturbance, and that effective reclamation of waste-dump areas would mitigate eco-environment destruction, as would be of great significance to protect fragile grassland eco-system. Six landscape index showed that landscape fragmentation increased, and the influences of human activity on landscape was mainly reflected in the expansion of mining area and urban area. Remote sensing monitoring of coal surface mining in grassland would accurately demonstrate the dynamics and trend of LUCC, providing scientific supports for ecological reconstruction in surface mining area.

Software developed by research vs. Freedom of information in EU (open access and open data)

Czech Academy of Sciences Publication Activity Database

Kolman, Jiří

2014-01-01

Roč. 8, č. 2 (2014), s. 183-198 ISSN 1802-5951 Institutional support: RVO:67179843 Keywords : cooperation of public research institutions and private partners * freedom of information in the EU * open access * open data * research and development * software Subject RIV: AG - Legal Sciences

INDEXING OF MAPING SCIENCE JOURNALS

Directory of Open Access Journals (Sweden)

Jadranka Stojanovski

2015-01-01

Full Text Available Bibliometric analyses based on citations are most often at the forefront where scientific publications are concerned. A fact often neglected is that the visibility and availability of scientific publications are basic prerequisites for future reading, citation and influence. Journal visibility can be significantly improved by providing open access and availability through popular online databases. In this study, we investigated 112 mapping science journals to determine the visibility of scientific publications in a smaller interdisciplinary field. In addition to other data, we collected data on open access, indexing, subject areas within the Web of Science and Scopus bibliographic databases and the number of journals in these databases. The coverage of mapping science journals in 14 bibliographic databases was analyzed. Only 11% of the titles from the journals analyzed were indexed in 10 or more databases. Google Scholar, Scopus, Bibliotheca Cartographica and GEOBASE include most mapping science journals, while only 19 are included in Web of Science. A comparison indicates more thorough coverage of an individual journal in Web of Science than in Scopus. Only a few mapping science journals appear in the Directory of Open Access Journals, despite the large number of open access mapping science journals available. Adding subject categories within databases does not facilitate finding mapping science journals, which are dispersed among numerous, mostly inadequate categories in the Web of Science and Scopus databases.

Spatio-temporal patterns of the effects of precipitation variability and land use/cover changes on long-term changes in sediment yield in the Loess Plateau, China

Directory of Open Access Journals (Sweden)

G. Gao

2017-09-01

Full Text Available Within China's Loess Plateau there have been concerted revegetation efforts and engineering measures since the 1950s aimed at reducing soil erosion and land degradation. As a result, annual streamflow, sediment yield, and sediment concentration have all decreased considerably. Human-induced land use/cover change (LUCC was the dominant factor, contributing over 70 % of the sediment load reduction, whereas the contribution of precipitation was less than 30 %. In this study, we use 50-year time series data (1961–2011, showing decreasing trends in the annual sediment loads of 15 catchments, to generate spatio-temporal patterns in the effects of LUCC and precipitation variability on sediment yield. The space–time variability of sediment yield was expressed notionally as a product of two factors representing (i the effect of precipitation and (ii the fraction of treated land surface area. Under minimal LUCC, the square root of annual sediment yield varied linearly with precipitation, with the precipitation–sediment load relationship showing coherent spatial patterns amongst the catchments. As the LUCC increased and took effect, the changes in sediment yield pattern depended more on engineering measures and vegetation restoration campaign, and the within-year rainfall patterns (especially storm events also played an important role. The effect of LUCC is expressed in terms of a sediment coefficient, i.e., the ratio of annual sediment yield to annual precipitation. Sediment coefficients showed a steady decrease over the study period, following a linear decreasing function of the fraction of treated land surface area. In this way, the study has brought out the separate roles of precipitation variability and LUCC in controlling spatio-temporal patterns of sediment yield at catchment scale.

Data Science: History repeated? - The heritage of the Free and Open Source GIS community

Science.gov (United States)

Löwe, Peter; Neteler, Markus

2014-05-01

Data Science is described as the process of knowledge extraction from large data sets by means of scientific methods. The discipline draws heavily from techniques and theories from many fields, which are jointly used to furthermore develop information retrieval on structured or unstructured very large datasets. While the term Data Science was already coined in 1960, the current perception of this field places is still in the first section of the hype cycle according to Gartner, being well en route from the technology trigger stage to the peak of inflated expectations. In our view the future development of Data Science could benefit from the analysis of experiences from related evolutionary processes. One predecessor is the area of Geographic Information Systems (GIS). The intrinsic scope of GIS is the integration and storage of spatial information from often heterogeneous sources, data analysis, sharing of reconstructed or aggregated results in visual form or via data transfer. GIS is successfully applied to process and analyse spatially referenced content in a wide and still expanding range of science areas, spanning from human and social sciences like archeology, politics and architecture to environmental and geoscientific applications, even including planetology. This paper presents proven patterns for innovation and organisation derived from the evolution of GIS, which can be ported to Data Science. Within the GIS landscape, three strategic interacting tiers can be denoted: i) Standardisation, ii) applications based on closed-source software, without the option of access to and analysis of the implemented algorithms, and iii) Free and Open Source Software (FOSS) based on freely accessible program code enabling analysis, education and ,improvement by everyone. This paper focuses on patterns gained from the synthesis of three decades of FOSS development. We identified best-practices which evolved from long term FOSS projects, describe the role of community

Public storage for the Open Science Grid

International Nuclear Information System (INIS)

Levshina, T; Guru, A

2014-01-01

The Open Science Grid infrastructure doesn't provide efficient means to manage public storage offered by participating sites. A Virtual Organization that relies on opportunistic storage has difficulties finding appropriate storage, verifying its availability, and monitoring its utilization. The involvement of the production manager, site administrators and VO support personnel is required to allocate or rescind storage space. One of the main requirements for Public Storage implementation is that it should use SRM or GridFTP protocols to access the Storage Elements provided by the OSG Sites and not put any additional burden on sites. By policy, no new services related to Public Storage can be installed and run on OSG sites. Opportunistic users also have difficulties in accessing the OSG Storage Elements during the execution of jobs. A typical users' data management workflow includes pre-staging common data on sites before a job's execution, then storing for a subsequent download to a local institution the output data produced by a job on a worker node. When the amount of data is significant, the only means to temporarily store the data is to upload it to one of the Storage Elements. In order to do that, a user's job should be aware of the storage location, availability, and free space. After a successful data upload, users must somehow keep track of the data's location for future access. In this presentation we propose solutions for storage management and data handling issues in the OSG. We are investigating the feasibility of using the integrated Rule-Oriented Data System developed at RENCI as a front-end service to the OSG SEs. The current architecture, state of deployment and performance test results will be discussed. We will also provide examples of current usage of the system by beta-users.

Public storage for the Open Science Grid

Science.gov (United States)

Levshina, T.; Guru, A.

2014-06-01

The Open Science Grid infrastructure doesn't provide efficient means to manage public storage offered by participating sites. A Virtual Organization that relies on opportunistic storage has difficulties finding appropriate storage, verifying its availability, and monitoring its utilization. The involvement of the production manager, site administrators and VO support personnel is required to allocate or rescind storage space. One of the main requirements for Public Storage implementation is that it should use SRM or GridFTP protocols to access the Storage Elements provided by the OSG Sites and not put any additional burden on sites. By policy, no new services related to Public Storage can be installed and run on OSG sites. Opportunistic users also have difficulties in accessing the OSG Storage Elements during the execution of jobs. A typical users' data management workflow includes pre-staging common data on sites before a job's execution, then storing for a subsequent download to a local institution the output data produced by a job on a worker node. When the amount of data is significant, the only means to temporarily store the data is to upload it to one of the Storage Elements. In order to do that, a user's job should be aware of the storage location, availability, and free space. After a successful data upload, users must somehow keep track of the data's location for future access. In this presentation we propose solutions for storage management and data handling issues in the OSG. We are investigating the feasibility of using the integrated Rule-Oriented Data System developed at RENCI as a front-end service to the OSG SEs. The current architecture, state of deployment and performance test results will be discussed. We will also provide examples of current usage of the system by beta-users.

Co-creating an open platform at the local governance level: How openness is enacted in Zambia

DEFF Research Database (Denmark)

Baka, Vasiliki

2016-01-01

The open mode of thinking, acting and being has been associated with liberating, participatory and collaborative arrangements that have prompted us to redefine how research, science, innovation and citizenship are to be conceived. In an era where much is said about the ‘open society’ and open inn...... at the local governance level, with implications for both theory and practice....

Review of Land Use and Land Cover Change research progress

Science.gov (United States)

Chang, Yue; Hou, Kang; Li, Xuxiang; Zhang, Yunwei; Chen, Pei

2018-02-01

Land Use and Land Cover Change (LUCC) can reflect the pattern of human land use in a region, and plays an important role in space soil and water conservation. The study on the change of land use patterns in the world is of great significance to cope with global climate change and sustainable development. This paper reviews the main research progress of LUCC at home and abroad, and suggests that land use change has been shifted from land use planning and management to land use change impact and driving factors. The development of remote sensing technology provides the basis and data for LUCC with dynamic monitoring and quantitative analysis. However, there is no uniform standard for land use classification at present, which brings a lot of inconvenience to the collection and analysis of land cover data. Globeland30 is an important milestone contribution to the study of international LUCC system. More attention should be paid to the accuracy and results contrasting test of land use classification obtained by remote sensing technology.

Aims and scope of the Netherlands HDP Committee. On the threshold of the third millennium

International Nuclear Information System (INIS)

1999-02-01

The Netherlands HDP Committee aims to promote and co-ordinate research on the human dimensions of global environmental change. Its main objective is to stimulate Dutch social scientists to participate in national and international global change research and to facilitate contacts between these researchers and potential funding agencies. The Committee is developing several strategic activities to bridge the gap between the Netherlands social science research community and the Science Projects that have been identified within the context of the International Human Dimensions Programme on Global Environmental Change (IHDP). The Science Projects covered include Industrial Transformation (IT), Global Environmental Change and Human Security (GECHS), Institutional Dimensions of Global Environmental Change (IDGEC) and Land Use and Land Cover (LUCC) respectively

Estimating Open Access in NARCIS

NARCIS (Netherlands)

Bode, Emil; Braukmann, Ricarda; Doorn, P.K.

2017-01-01

This poster shows the state of open access in the Netherlands according to NARCIS, the national portal for information on Dutch science. The number of open and closed publications in NARCIS analysed, per type of publication, per year for PhD dissertations and articles, along with a percentage of OA

openBIS ELN-LIMS: an open-source database for academic laboratories.

Science.gov (United States)

Barillari, Caterina; Ottoz, Diana S M; Fuentes-Serna, Juan Mariano; Ramakrishnan, Chandrasekhar; Rinn, Bernd; Rudolf, Fabian

2016-02-15

The open-source platform openBIS (open Biology Information System) offers an Electronic Laboratory Notebook and a Laboratory Information Management System (ELN-LIMS) solution suitable for the academic life science laboratories. openBIS ELN-LIMS allows researchers to efficiently document their work, to describe materials and methods and to collect raw and analyzed data. The system comes with a user-friendly web interface where data can be added, edited, browsed and searched. The openBIS software, a user guide and a demo instance are available at https://openbis-eln-lims.ethz.ch. The demo instance contains some data from our laboratory as an example to demonstrate the possibilities of the ELN-LIMS (Ottoz et al., 2014). For rapid local testing, a VirtualBox image of the ELN-LIMS is also available. © The Author 2015. Published by Oxford University Press.

Automatic Integration Testbeds validation on Open Science Grid

International Nuclear Information System (INIS)

Caballero, J; Potekhin, M; Thapa, S; Gardner, R

2011-01-01

A recurring challenge in deploying high quality production middleware is the extent to which realistic testing occurs before release of the software into the production environment. We describe here an automated system for validating releases of the Open Science Grid software stack that leverages the (pilot-based) PanDA job management system developed and used by the ATLAS experiment. The system was motivated by a desire to subject the OSG Integration Testbed to more realistic validation tests. In particular those which resemble to every extent possible actual job workflows used by the experiments thus utilizing job scheduling at the compute element (CE), use of the worker node execution environment, transfer of data to/from the local storage element (SE), etc. The context is that candidate releases of OSG compute and storage elements can be tested by injecting large numbers of synthetic jobs varying in complexity and coverage of services tested. The native capabilities of the PanDA system can thus be used to define jobs, monitor their execution, and archive the resulting run statistics including success and failure modes. A repository of generic workflows and job types to measure various metrics of interest has been created. A command-line toolset has been developed so that testbed managers can quickly submit 'VO-like' jobs into the system when newly deployed services are ready for testing. A system for automatic submission has been crafted to send jobs to integration testbed sites, collecting the results in a central service and generating regular reports for performance and reliability.

Automatic Integration Testbeds validation on Open Science Grid

Science.gov (United States)

Caballero, J.; Thapa, S.; Gardner, R.; Potekhin, M.

2011-12-01

A recurring challenge in deploying high quality production middleware is the extent to which realistic testing occurs before release of the software into the production environment. We describe here an automated system for validating releases of the Open Science Grid software stack that leverages the (pilot-based) PanDA job management system developed and used by the ATLAS experiment. The system was motivated by a desire to subject the OSG Integration Testbed to more realistic validation tests. In particular those which resemble to every extent possible actual job workflows used by the experiments thus utilizing job scheduling at the compute element (CE), use of the worker node execution environment, transfer of data to/from the local storage element (SE), etc. The context is that candidate releases of OSG compute and storage elements can be tested by injecting large numbers of synthetic jobs varying in complexity and coverage of services tested. The native capabilities of the PanDA system can thus be used to define jobs, monitor their execution, and archive the resulting run statistics including success and failure modes. A repository of generic workflows and job types to measure various metrics of interest has been created. A command-line toolset has been developed so that testbed managers can quickly submit "VO-like" jobs into the system when newly deployed services are ready for testing. A system for automatic submission has been crafted to send jobs to integration testbed sites, collecting the results in a central service and generating regular reports for performance and reliability.

Open Distribution of Virtual Containers as a Key Framework for Open Educational Resources and STEAM Subjects

Science.gov (United States)

Corbi, Alberto; Burgos, Daniel

2017-01-01

This paper presents how virtual containers enhance the implementation of STEAM (science, technology, engineering, arts, and math) subjects as Open Educational Resources (OER). The publication initially summarizes the limitations of delivering open rich learning contents and corresponding assignments to students in college level STEAM areas. The…

Use of the Paid Open Access Option in Hybrid Open Access Journals in Agriculture: A Mixed-Methods Study

Directory of Open Access Journals (Sweden)

Megan Kocher

2016-12-01

Full Text Available We explore the use and usefulness of the hybrid open access publishing model in agricultural sciences using a combination of quantitative and qualitative methods. To ascertain the level of usage of the paid open access option in hybrid open access journals in agriculture, we studied the agriculture-related journals published by six commercial publishers. These publishers offer authors the option of paying a fee, often close to $3,000 per article, to make their article immediately freely available, usually with a Creative Commons license. We defined agriculture broadly but also assigned each journal to a subspecialty (e.g., animal science in order to see if there were differences based on these subdivisions. For each journal we gathered data for 2014-2015 and noted the total number of research articles and the number of those that were made freely available by authors paying the open access fee. To give context to our results we also surveyed local faculty in agricultural sciences, asking their reasons for considering the paid open access options and the sources of the funds to pay for it. Survey respondents were asked about their academic position and rank to see if there were differences to be noted. We also investigated the findability of the open access articles, noting if each individual publisher offered a way to easily locate all the freely available articles in a particular journal and if there are other avenues to easily locate these articles.

An Investigation of Science and Technology Teachers’ Views on the 5th Grade Science Course

OpenAIRE

İkramettin Daşdemir

2014-01-01

This study was conducted to explore the science and technology teachers’ views on the implementation of 5th grade science course. Open-ended questions were used as a data collection tool. The study sample consisted of 28 science and technology teachers working in Erzurum in 2012-2013 education year. The data gathered were analysed via content analysis method. According to the results obtained from the open-ended questions, a great majority of science and technology teache...

Science teaching in science education

Science.gov (United States)

Callahan, Brendan E.; Dopico, Eduardo

2016-06-01

Reading the interesting article Discerning selective traditions in science education by Per Sund , which is published in this issue of CSSE, allows us to open the discussion on procedures for teaching science today. Clearly there is overlap between the teaching of science and other areas of knowledge. However, we must constantly develop new methods to teach and differentiate between science education and teaching science in response to the changing needs of our students, and we must analyze what role teachers and teacher educators play in both. We must continually examine the methods and concepts involved in developing pedagogical content knowledge in science teachers. Otherwise, the possibility that these routines, based on subjective traditions, prevent emerging processes of educational innovation. Modern science is an enormous field of knowledge in its own right, which is made more expansive when examined within the context of its place in society. We propose the need to design educative interactions around situations that involve science and society. Science education must provide students with all four dimensions of the cognitive process: factual knowledge, conceptual knowledge, procedural knowledge, and metacognitive knowledge. We can observe in classrooms at all levels of education that students understand the concepts better when they have the opportunity to apply the scientific knowledge in a personally relevant way. When students find value in practical exercises and they are provided opportunities to reinterpret their experiences, greater learning gains are achieved. In this sense, a key aspect of educational innovation is the change in teaching methodology. We need new tools to respond to new problems. A shift in teacher education is needed to realize the rewards of situating science questions in a societal context and opening classroom doors to active methodologies in science education to promote meaningful learning through meaningful teaching.

Towards a global participatory platform. Democratising open data, complexity science and collective intelligence

Science.gov (United States)

Buckingham Shum, S.; Aberer, K.; Schmidt, A.; Bishop, S.; Lukowicz, P.; Anderson, S.; Charalabidis, Y.; Domingue, J.; de Freitas, S.; Dunwell, I.; Edmonds, B.; Grey, F.; Haklay, M.; Jelasity, M.; Karpištšenko, A.; Kohlhammer, J.; Lewis, J.; Pitt, J.; Sumner, R.; Helbing, D.

2012-11-01

The FuturICT project seeks to use the power of big data, analytic models grounded in complexity science, and the collective intelligence they yield for societal benefit. Accordingly, this paper argues that these new tools should not remain the preserve of restricted government, scientific or corporate élites, but be opened up for societal engagement and critique. To democratise such assets as a public good, requires a sustainable ecosystem enabling different kinds of stakeholder in society, including but not limited to, citizens and advocacy groups, school and university students, policy analysts, scientists, software developers, journalists and politicians. Our working name for envisioning a sociotechnical infrastructure capable of engaging such a wide constituency is the Global Participatory Platform (GPP). We consider what it means to develop a GPP at the different levels of data, models and deliberation, motivating a framework for different stakeholders to find their ecological niches at different levels within the system, serving the functions of (i) sensing the environment in order to pool data, (ii) mining the resulting data for patterns in order to model the past/present/future, and (iii) sharing and contesting possible interpretations of what those models might mean, and in a policy context, possible decisions. A research objective is also to apply the concepts and tools of complexity science and social science to the project's own work. We therefore conceive the global participatory platform as a resilient, epistemic ecosystem, whose design will make it capable of self-organization and adaptation to a dynamic environment, and whose structure and contributions are themselves networks of stakeholders, challenges, issues, ideas and arguments whose structure and dynamics can be modelled and analysed.

Fostering Data Openness by Enabling Science: A Proposal for Micro-Funding

Directory of Open Access Journals (Sweden)

Brian Rappert

2017-09-01

Full Text Available In recent years, the promotion of data sharing has come with the recognition that not all scientists around the world are equally placed to partake in such activities. Notably, those within developing countries are sometimes regarded as experiencing hardware infrastructure challenges and data management skill shortages. Proposed remedies often focus on the provision of information and communication technology as well as enhanced data management training. Building on prior empirical social research undertaken in sub-Sahara Africa, this article provides a complementary but alternative proposal; namely, fostering data openness by enabling research. Towards this end, the underlying rationale is outlined for a ‘bottom-up’ system of research support that addresses the day-to-day demands in low-resourced environments. This approach draws on lessons from development financial assistance programs in recent decades. In doing so, this article provides an initial framework for science funding that call for holding together concerns for ensuring research can be undertaken in low-resourced laboratory environments with concerns about the data generated in such settings can be shared.

Openness to experience and culture-openness transactions across the lifespan

NARCIS (Netherlands)

Schwaba, Ted; Luhmann, Maike; Denissen, J.J.A.; Chung, J.M.H.; Bleidorn, Wiebke

2018-01-01

We examined the life span development of openness to experience and tested whether change in this personality trait was associated with change in cultural activity, such as attending the opera or visiting museums. Data came from the Dutch Longitudinal Internet Study for the Social Sciences panel,

Teachers' tendencies to promote student-led science projects: Associations with their views about science

Science.gov (United States)

Bencze, J. Lawrence; Bowen, G. Michael; Alsop, Steve

2006-05-01

School science students can benefit greatly from participation in student-directed, open-ended scientific inquiry projects. For various possible reasons, however, students tend not to be engaged in such inquiries. Among factors that may limit their opportunities to engage in open-ended inquiries of their design are teachers' conceptions about science. To explore possible relationships between teachers' conceptions about science and the types of inquiry activities in which they engage students, instrumental case studies of five secondary science teachers were developed, using field notes, repertory grids, samples of lesson plans and student activities, and semistructured interviews. Based on constructivist grounded theory analysis, participating teachers' tendencies to promote student-directed, open-ended scientific inquiry projects seemed to correspond with positions about the nature of science to which they indicated adherence. A tendency to encourage and enable students to carry out student-directed, open-ended scientific inquiry projects appeared to be associated with adherence to social constructivist views about science. Teachers who opposed social constructivist views tended to prefer tight control of student knowledge building procedures and conclusions. We suggest that these results can be explained with reference to human psychological factors, including those associated with teachers' self-esteem and their relationships with knowledge-building processes in the discipline of their teaching.

Democratizing data science through data science training.

Science.gov (United States)

Van Horn, John Darrell; Fierro, Lily; Kamdar, Jeana; Gordon, Jonathan; Stewart, Crystal; Bhattrai, Avnish; Abe, Sumiko; Lei, Xiaoxiao; O'Driscoll, Caroline; Sinha, Aakanchha; Jain, Priyambada; Burns, Gully; Lerman, Kristina; Ambite, José Luis

2018-01-01

The biomedical sciences have experienced an explosion of data which promises to overwhelm many current practitioners. Without easy access to data science training resources, biomedical researchers may find themselves unable to wrangle their own datasets. In 2014, to address the challenges posed such a data onslaught, the National Institutes of Health (NIH) launched the Big Data to Knowledge (BD2K) initiative. To this end, the BD2K Training Coordinating Center (TCC; bigdatau.org) was funded to facilitate both in-person and online learning, and open up the concepts of data science to the widest possible audience. Here, we describe the activities of the BD2K TCC and its focus on the construction of the Educational Resource Discovery Index (ERuDIte), which identifies, collects, describes, and organizes online data science materials from BD2K awardees, open online courses, and videos from scientific lectures and tutorials. ERuDIte now indexes over 9,500 resources. Given the richness of online training materials and the constant evolution of biomedical data science, computational methods applying information retrieval, natural language processing, and machine learning techniques are required - in effect, using data science to inform training in data science. In so doing, the TCC seeks to democratize novel insights and discoveries brought forth via large-scale data science training.

The Open Science Grid - Support for Multi-Disciplinary Team Science - the Adolescent Years

Science.gov (United States)

Bauerdick, Lothar; Ernst, Michael; Fraser, Dan; Livny, Miron; Pordes, Ruth; Sehgal, Chander; Würthwein, Frank; Open Science Grid

2012-12-01

As it enters adolescence the Open Science Grid (OSG) is bringing a maturing fabric of Distributed High Throughput Computing (DHTC) services that supports an expanding HEP community to an increasingly diverse spectrum of domain scientists. Working closely with researchers on campuses throughout the US and in collaboration with national cyberinfrastructure initiatives, we transform their computing environment through new concepts, advanced tools and deep experience. We discuss examples of these including: the pilot-job overlay concepts and technologies now in use throughout OSG and delivering 1.4 Million CPU hours/day; the role of campus infrastructures- built out from concepts of sharing across multiple local faculty clusters (made good use of already by many of the HEP Tier-2 sites in the US); the work towards the use of clouds and access to high throughput parallel (multi-core and GPU) compute resources; and the progress we are making towards meeting the data management and access needs of non-HEP communities with general tools derived from the experience of the parochial tools in HEP (integration of Globus Online, prototyping with IRODS, investigations into Wide Area Lustre). We will also review our activities and experiences as HTC Service Provider to the recently awarded NSF XD XSEDE project, the evolution of the US NSF TeraGrid project, and how we are extending the reach of HTC through this activity to the increasingly broad national cyberinfrastructure. We believe that a coordinated view of the HPC and HTC resources in the US will further expand their impact on scientific discovery.

The event notification and alarm system for the Open Science Grid operations center

Science.gov (United States)

Hayashi, S.; Teige and, S.; Quick, R.

2012-12-01

The Open Science Grid Operations (OSG) Team operates a distributed set of services and tools that enable the utilization of the OSG by several HEP projects. Without these services users of the OSG would not be able to run jobs, locate resources, obtain information about the status of systems or generally use the OSG. For this reason these services must be highly available. This paper describes the automated monitoring and notification systems used to diagnose and report problems. Described here are the means used by OSG Operations to monitor systems such as physical facilities, network operations, server health, service availability and software error events. Once detected, an error condition generates a message sent to, for example, Email, SMS, Twitter, an Instant Message Server, etc. The mechanism being developed to integrate these monitoring systems into a prioritized and configurable alarming system is emphasized.

The event notification and alarm system for the Open Science Grid operations center

Energy Technology Data Exchange (ETDEWEB)

Hayashi, S; Teige and, S; Quick, R [Indiana University, University Information Technology Services (United States)

2012-12-13

The Open Science Grid Operations (OSG) Team operates a distributed set of services and tools that enable the utilization of the OSG by several HEP projects. Without these services users of the OSG would not be able to run jobs, locate resources, obtain information about the status of systems or generally use the OSG. For this reason these services must be highly available. This paper describes the automated monitoring and notification systems used to diagnose and report problems. Described here are the means used by OSG Operations to monitor systems such as physical facilities, network operations, server health, service availability and software error events. Once detected, an error condition generates a message sent to, for example, Email, SMS, Twitter, an Instant Message Server, etc. The mechanism being developed to integrate these monitoring systems into a prioritized and configurable alarming system is emphasized.

The event notification and alarm system for the Open Science Grid operations center

International Nuclear Information System (INIS)

Hayashi, S; Teige and, S; Quick, R

2012-01-01

The Open Science Grid Operations (OSG) Team operates a distributed set of services and tools that enable the utilization of the OSG by several HEP projects. Without these services users of the OSG would not be able to run jobs, locate resources, obtain information about the status of systems or generally use the OSG. For this reason these services must be highly available. This paper describes the automated monitoring and notification systems used to diagnose and report problems. Described here are the means used by OSG Operations to monitor systems such as physical facilities, network operations, server health, service availability and software error events. Once detected, an error condition generates a message sent to, for example, Email, SMS, Twitter, an Instant Message Server, etc. The mechanism being developed to integrate these monitoring systems into a prioritized and configurable alarming system is emphasized.

Supporting the advancement of science: Open access publishing and the role of mandates

Directory of Open Access Journals (Sweden)

Phelps Lisa

2012-01-01

Full Text Available Abstract In December 2011 the United States House of Representatives introduced a new bill, the Research Works Act (H.R.3699, which if passed could threaten the public's access to US government funded research. In a digital age when professional and lay parties alike look more and more to the online environment to keep up to date with developments in their fields, does this bill serve the best interests of the community? Those in support of the Research Works Act argue that government open access mandates undermine peer-review and take intellectual property from publishers without compensation, however journals like Journal of Translational Medicine show that this is not the case. Journal of Translational Medicine in affiliation with the Society for Immunotherapy of Cancer demonstrates how private and public organisations can work together for the advancement of science.

Land use changes and plantation crop development in selected provinces in Sumatra and Kalimantan

Science.gov (United States)

Tarigan, S. D.

2018-05-01

Most institutions stated that biofuel will not qualify the standard of GHG emission reduction if it was produced in the plantation associated with the forest conversion. Therefore, knowing previous land use before the development of plantation is very important. In Indonesia, plantation development occurs mainly in Sumatra and Kalimantan. A number of studies had been published showing historical LUCC before plantation development. Objective of this study was to review various studies on LUCC carried out in four selected provinces, namely West Kalimantan, Central Kalimantan, East Kalimantan, and Riau. The analysis and comparison was based on the different source of historical data including online spatial data sources and various studies published in various journals. Each data source of LUCC shows significant variation on the amount of plantation developed directly from forest and other land use types. But, our review showed that the plantation areas associated with the forest cover changes far less than those claimed by several international journals. But, the debate concerning which plantation developments indirectly contributed to LUCC and which are directly will probably continue until the information on the land ownership and history of plantation development is available publicly.

Defining an Open Source Strategy for NASA

Science.gov (United States)

Mattmann, C. A.; Crichton, D. J.; Lindsay, F.; Berrick, S. W.; Marshall, J. J.; Downs, R. R.

2011-12-01

Over the course of the past year, we have worked to help frame a strategy for NASA and open source software. This includes defining information processes to understand open source licensing, attribution, commerciality, redistribution, communities, architectures, and interactions within the agency. Specifically we held a training session at the NASA Earth Science Data Systems Working Group meeting in Open Source software as it relates to the NASA Earth Science data systems enterprise, including EOSDIS, the Distributed Active Archive Centers (DAACs), ACCESS proposals, and the MEASURES communities, and efforts to understand how open source software can be both consumed and produced within that ecosystem. In addition, we presented at the 1st NASA Open Source Summit (OSS) and helped to define an agency-level strategy, a set of recommendations and paths forward for how to identify healthy open source communities, how to deal with issues such as contributions originating from other agencies, and how to search out talent with the right skills to develop software for NASA in the modern age. This talk will review our current recommendations for open source at NASA, and will cover the set of thirteen recommendations output from the NASA Open Source Summit and discuss some of their implications for the agency.

Open source software and low cost sensors for teaching UAV science

Science.gov (United States)

Kefauver, S. C.; Sanchez-Bragado, R.; El-Haddad, G.; Araus, J. L.

2016-12-01

Drones, also known as UASs (unmanned aerial systems), UAVs (Unmanned Aerial Vehicles) or RPAS (Remotely piloted aircraft systems), are both useful advanced scientific platforms and recreational toys that are appealing to younger generations. As such, they can make for excellent education tools as well as low-cost scientific research project alternatives. However, the process of taking pretty pictures to remote sensing science can be daunting if one is presented with only expensive software and sensor options. There are a number of open-source tools and low cost platform and sensor options available that can provide excellent scientific research results, and, by often requiring more user-involvement than commercial software and sensors, provide even greater educational benefits. Scale-invariant feature transform (SIFT) algorithm implementations, such as the Microsoft Image Composite Editor (ICE), which can create quality 2D image mosaics with some motion and terrain adjustments and VisualSFM (Structure from Motion), which can provide full image mosaicking with movement and orthorectification capacities. RGB image quantification using alternate color space transforms, such as the BreedPix indices, can be calculated via plugins in the open-source software Fiji (http://fiji.sc/Fiji; http://github.com/george-haddad/CIMMYT). Recent analyses of aerial images from UAVs over different vegetation types and environments have shown RGB metrics can outperform more costly commercial sensors. Specifically, Hue-based pixel counts, the Triangle Greenness Index (TGI), and the Normalized Green Red Difference Index (NGRDI) consistently outperformed NDVI in estimating abiotic and biotic stress impacts on crop health. Also, simple kits are available for NDVI camera conversions. Furthermore, suggestions for multivariate analyses of the different RGB indices in the "R program for statistical computing", such as classification and regression trees can allow for a more approachable

Mapping the Influence of Land Use/Land Cover Changes on the Urban Heat Island Effect—A Case Study of Changchun, China

Directory of Open Access Journals (Sweden)

Chaobin Yang

2017-02-01

Full Text Available The spatio-temporal patterns of land use/land cover changes (LUCC can significantly affect the distribution and intensity of the urban heat island (UHI effect. However, few studies have mapped a clear picture of the influence of LUCC on UHI. In this study, both qualitative and quantitative models are employed to explore the effect of LUCC on UHI. UHI and LUCC maps were retrieved from Landsat data acquired from 1984, 1992, 2000, 2007, and 2014 to show their spatiotemporal patterns. The results showed that: (1 both the patterns of LUCC and UHI have had dramatic changes in the past 30 years. The urban area of Changchun increased more than four times, from 143.15 km2 in 1984 to 577.45 km2 in 2014, and the proportion of UHI regions has increased from 15.27% in 1984 to 29.62% in 2014; (2 the spatiotemporal changes in thermal environment were consistent with the process of urbanization. The average LST of the study area has been continuously increasing as many other land use types have been transformed to urban regions. The mean temperatures were higher in urban regions than rural areas over all of the periods, but the UHI intensity varied based on different measurements; and (3 the thermal environment inside the city varied widely even within a small area. The LST possesses a very strong positive relationship with impervious surface area (ISA, and the relationship has become stronger in recent years. The UHI we employ, specifically in this study, is SUHI (surface urban heat island.

Sharing Lessons-Learned on Effective Open Data, Open-Source Practices from OpenAQ, a Global Open Air Quality Community.

Science.gov (United States)

Hasenkopf, C. A.

2017-12-01

Increasingly, open data, open-source projects are unearthing rich datasets and tools, previously impossible for more traditional avenues to generate. These projects are possible, in part, because of the emergence of online collaborative and code-sharing tools, decreasing costs of cloud-based services to fetch, store, and serve data, and increasing interest of individuals to contribute their time and skills to 'open projects.' While such projects have generated palpable enthusiasm from many sectors, many of these projects face uncharted paths for sustainability, visibility, and acceptance. Our project, OpenAQ, is an example of an open-source, open data community that is currently forging its own uncharted path. OpenAQ is an open air quality data platform that aggregates and universally formats government and research-grade air quality data from 50 countries across the world. To date, we make available more than 76 million air quality (PM2.5, PM10, SO2, NO2, O3, CO and black carbon) data points through an open Application Programming Interface (API) and a user-customizable download interface at https://openaq.org. The goal of the platform is to enable an ecosystem of users to advance air pollution efforts from science to policy to the private sector. The platform is also an open-source project (https://github.com/openaq) and has only been made possible through the coding and data contributions of individuals around the world. In our first two years of existence, we have seen requests for data to our API skyrocket to more than 6 million datapoints per month, and use-cases as varied as ingesting data aggregated from our system into real-time models of wildfires to building open-source statistical packages (e.g. ropenaq and py-openaq) on top of the platform to creating public-friendly apps and chatbots. We will share a whirl-wind trip through our evolution and the many lessons learned so far related to platform structure, community engagement, organizational model type

The ethics of open access publishing.

Science.gov (United States)

Parker, Michael

2013-03-22

Should those who work on ethics welcome or resist moves to open access publishing? This paper analyses arguments in favour and against the increasing requirement for open access publishing and considers their implications for bioethics research. In the context of biomedical science, major funders are increasingly mandating open access as a condition of funding and such moves are also common in other disciplines. Whilst there has been some debate about the implications of open-access for the social sciences and humanities, there has been little if any discussion about the implications of open access for ethics. This is surprising given both the central role of public reason and critique in ethics and the fact that many of the arguments made for and against open access have been couched in moral terms. In what follows I argue that those who work in ethics have a strong interest in supporting moves towards more open publishing approaches which have the potential both to inform and promote richer and more diverse forms of public deliberation and to be enriched by them. The importance of public deliberation in practical and applied ethics suggests that ethicists have a particular interest in the promotion of diverse and experimental forms of publication and debate and in supporting new, more creative and more participatory approaches to publication.

Benefits of Openness for US Security

Science.gov (United States)

May, Michael M.

2000-04-01

The US has been very successful in applying science and engineering to defense and space. The US has also run the most open defense research and development establishment in the world. The openness is connected with the success by making possible open criticism of mistakes and failures, access of foreign-born citizens, and participation of cleared scientists and engineers in open science around the world. This open system is at risk today, when it is more badly needed than ever. The right strategy is first, to draw a clear line around the information that should be kept secret, with some margin so that this information would not be partially given away by its boundary, and to continue with the open system elsewhere. The US, because it invests more, usually profits more from common knowledge. Second, spies are caught through good line leadership and good security work. The constraints now being discussed on unclassified information or on foreign visitors would not have helped catch them. Third, new guidance is needed for exports control. The US must cooperate with countries that are partners in trade and in international initiatives of the first importance, but which may also be political, economic and military rivals. Guidelines to protect what is key to our current military edge while retaining the open system are suggested.

Learning At The Boundaries In An “Open Regional Innovation System”: A Focus On Firms’ Innovation Strategies In The Emilia Romagna Life Science Industry

OpenAIRE

fiorenza belussi; silvia rita sedita; alessia sammarra

2010-01-01

The paper investigates the existence of an Open Regional Innovation System (ORIS model). This model is characterised by the firms’ adoption of an open innovation strategy, which overcomes not only the boundaries of the firms but also the boundaries of the region. Using data collected in a sample of life science firms, our research provides the evidence that the Emilia Romagna RIS has evolved towards an ORIS model, where firms’ innovation search strategy, despite being still embedded in local ...

Incorporating modern OpenGL into computer graphics education.

Science.gov (United States)

Reina, Guido; Muller, Thomas; Ertl, Thomas

2014-01-01

University of Stuttgart educators have updated three computer science courses to incorporate forward-compatible OpenGL. To help students, they developed an educational framework that abstracts some of modern OpenGL's difficult aspects.

Thermoviscous analysis of open photoacoustic cells

Science.gov (United States)

Mannoor, Madhusoodanan; Kang, Sangmo

2017-11-01

Open photoacoustic cells, apart from the conventional spectroscopic applications, are increasingly useful in bio medical applications such as in vivo blood sugar measurement. Maximising the acoustic pressure amplitude and the quality factor are major design considerations associated with open cells.Conventionaly, resonant photoacoustic cells are analyzed by either transmission line analogy or Eigen mode expansion method. In this study, we conducted a more comprehensive thermo viscous analysis of open photoacoustic cells. A Helmholtz cell and a T-shaped cell, which are acoustically different, are considered for analysis. Effect of geometrical dimensions on the acoustic pressure, quality factor and the intrusion of noise are analyzed and compared between these cells. Specific attention is given to the sizing of the opening and fixtures on it to minimize the radiational losses and the intrusion of noise. Our results are useful for proper selection of the type of open photoacoustic cells for in vivo blood sugar measurement and the optimization of geometric variables of such cells. This research was supported by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT and future planning (2017R1A2B4005006).

Biochemistry - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

Lifescience Database Archive (English)

Full Text Available tests. Data file File name: open_tggates_biochemistry.zip File URL: ftp://ftp.biosciencedbc.jp/archive/open-...tggates/LATEST/open_tggates_biochemistry.zip File size: 666 KB Simple search URL ...http://togodb.biosciencedbc.jp/togodb/view/open_tggates_biochemistry#en Data acquisition method - Data analy

Formatting Open Science: agilely creating multiple document formats for academic manuscripts with Pandoc Scholar

Directory of Open Access Journals (Sweden)

Albert Krewinkel

2017-05-01

Full Text Available The timely publication of scientific results is essential for dynamic advances in science. The ubiquitous availability of computers which are connected to a global network made the rapid and low-cost distribution of information through electronic channels possible. New concepts, such as Open Access publishing and preprint servers are currently changing the traditional print media business towards a community-driven peer production. However, the cost of scientific literature generation, which is either charged to readers, authors or sponsors, is still high. The main active participants in the authoring and evaluation of scientific manuscripts are volunteers, and the cost for online publishing infrastructure is close to negligible. A major time and cost factor is the formatting of manuscripts in the production stage. In this article we demonstrate the feasibility of writing scientific manuscripts in plain markdown (MD text files, which can be easily converted into common publication formats, such as PDF, HTML or EPUB, using Pandoc. The simple syntax of Markdown assures the long-term readability of raw files and the development of software and workflows. We show the implementation of typical elements of scientific manuscripts—formulas, tables, code blocks and citations—and present tools for editing, collaborative writing and version control. We give an example on how to prepare a manuscript with distinct output formats, a DOCX file for submission to a journal, and a LATEX/PDF version for deposition as a PeerJ preprint. Further, we implemented new features for supporting ‘semantic web’ applications, such as the ‘journal article tag suite’—JATS, and the ‘citation typing ontology’—CiTO standard. Reducing the work spent on manuscript formatting translates directly to time and cost savings for writers, publishers, readers and sponsors. Therefore, the adoption of the MD format contributes to the agile production of open science

Open Babel: An open chemical toolbox

Directory of Open Access Journals (Sweden)

O'Boyle Noel M

2011-10-01

Full Text Available Abstract Background A frequent problem in computational modeling is the interconversion of chemical structures between different formats. While standard interchange formats exist (for example, Chemical Markup Language and de facto standards have arisen (for example, SMILES format, the need to interconvert formats is a continuing problem due to the multitude of different application areas for chemistry data, differences in the data stored by different formats (0D versus 3D, for example, and competition between software along with a lack of vendor-neutral formats. Results We discuss, for the first time, Open Babel, an open-source chemical toolbox that speaks the many languages of chemical data. Open Babel version 2.3 interconverts over 110 formats. The need to represent such a wide variety of chemical and molecular data requires a library that implements a wide range of cheminformatics algorithms, from partial charge assignment and aromaticity detection, to bond order perception and canonicalization. We detail the implementation of Open Babel, describe key advances in the 2.3 release, and outline a variety of uses both in terms of software products and scientific research, including applications far beyond simple format interconversion. Conclusions Open Babel presents a solution to the proliferation of multiple chemical file formats. In addition, it provides a variety of useful utilities from conformer searching and 2D depiction, to filtering, batch conversion, and substructure and similarity searching. For developers, it can be used as a programming library to handle chemical data in areas such as organic chemistry, drug design, materials science, and computational chemistry. It is freely available under an open-source license from http://openbabel.org.

Open Babel: An open chemical toolbox

Science.gov (United States)

2011-01-01

Background A frequent problem in computational modeling is the interconversion of chemical structures between different formats. While standard interchange formats exist (for example, Chemical Markup Language) and de facto standards have arisen (for example, SMILES format), the need to interconvert formats is a continuing problem due to the multitude of different application areas for chemistry data, differences in the data stored by different formats (0D versus 3D, for example), and competition between software along with a lack of vendor-neutral formats. Results We discuss, for the first time, Open Babel, an open-source chemical toolbox that speaks the many languages of chemical data. Open Babel version 2.3 interconverts over 110 formats. The need to represent such a wide variety of chemical and molecular data requires a library that implements a wide range of cheminformatics algorithms, from partial charge assignment and aromaticity detection, to bond order perception and canonicalization. We detail the implementation of Open Babel, describe key advances in the 2.3 release, and outline a variety of uses both in terms of software products and scientific research, including applications far beyond simple format interconversion. Conclusions Open Babel presents a solution to the proliferation of multiple chemical file formats. In addition, it provides a variety of useful utilities from conformer searching and 2D depiction, to filtering, batch conversion, and substructure and similarity searching. For developers, it can be used as a programming library to handle chemical data in areas such as organic chemistry, drug design, materials science, and computational chemistry. It is freely available under an open-source license from http://openbabel.org. PMID:21982300

Undergraduate Research in Quantum Information Science

Science.gov (United States)

Lyons, David W.

2017-01-01

Quantum Information Science (QIS) is an interdisciplinary field involving mathematics, computer science, and physics. Appealing aspects include an abundance of accessible open problems, active interest and support from government and industry, and an energetic, open, and collaborative international research culture. We describe our student-faculty…

The Hyper-Commons: how open science prizes can expand and level the medical research playing field.

Science.gov (United States)

Hynek, Paul

2008-12-01

The largest industry in America is increasingly incapable of serving its customers. Over-fencing of the information commons has led to unaffordable medicine, for want of which millions of Americans and people around the world go without lifesaving treatments. Eliminating patent distribution exclusivity altogether, however, is not feasible, given the entrenched nature of the health-care industry. This paper proposes a program of voluntary Open Science Prizes that would draw large numbers of new players, who would in turn produce much new medical innovation, provide academic priority recognition, and develop a growing body of patent-beating prior art that would serve as public domain firewalls on a new supranational Hyper-Commons.

Science commons

CERN Multimedia

CERN. Geneva

2007-01-01

SCP: Creative Commons licensing for open access publishing, Open Access Law journal-author agreements for converting journals to open access, and the Scholar's Copyright Addendum Engine for retaining rights to self-archive in meaningful formats and locations for future re-use. More than 250 science and technology journals already publish under Creative Commons licensing while 35 law journals utilize the Open Access Law agreements. The Addendum Engine is a new tool created in partnership with SPARC and U.S. universities. View John Wilbanks's biography

The long haul towards open research results

DEFF Research Database (Denmark)

Ibanez, Karen Sofie Hytteballe; Sandfær, Anne

2015-01-01

In June 2014 Denmark got a long-awaited Open Access (OA) Strategy. As early as in autumn 2011, a working group under the Ministry of Higher Education and Science produced 16 recommendations concerning an Open Access policy, but almost three years would pass before minister for higher education...

Inconsistent Responses of Hot Extremes to Historical Land Use and Cover Change Among the Selected CMIP5 Models

Science.gov (United States)

Li, Xing; Chen, Haishan; Wei, Jiangfeng; Hua, Wenjian; Sun, Shanlei; Ma, Hedi; Li, Xiao; Li, Jingping

2018-04-01

Land use and cover change (LUCC) is an important anthropogenic forcing of the climate system. Previous studies have demonstrated that LUCC significantly impacts both mean and extreme temperatures. In this study, we explored the multimodel performance of simulating LUCC-induced asymmetric effects on the different percentiles of maximum temperatures (Tmax) as well as the possible reasons for these effects using results from the fifth phase of the Coupled Model Intercomparison Project (CMIP5). Four state-of-art Earth system models (which provide the necessary data) are selected for investigating this issue. In general, all the cases of the model from the Geophysical Fluid Dynamics Laboratory show robust asymmetric responses between the 90th (TX90P) and 10th percentiles (TX10P) of Tmax, mainly due to cropland expansions, especially over India, the Sahel, and some parts of North America. However, weak and insignificant responses are shown for both the TX90P and TX10P in other models. The different changes in the Tmax variability among the models are primarily responsible for the occurrence of asymmetric features. Furthermore, by decomposing the Tmax changes over three typical regions, we analyze the potential causes for the inconsistencies among these models' results and find two crucial processes, that is, the repartitioning of the turbulent heat fluxes and the changes of the diurnal cycle variability due to LUCC. Whether these processes are pronounced determines the occurrence of the asymmetric Tmax responses. Overall, this study provides a critical clue for reducing the uncertainties of the LUCC effects on temperature extremes, which should be evaluated against observations.

Land Use Cover Changes and Run Off Potention of Cipunten Agung Watershed Banten

Science.gov (United States)

Karima, A.; Kaswanto, R. L.

2017-10-01

The changes of landscape form such as Land Use Cover Changes (LUCC) of Cipunten Agung watershed could be identified periodically in 1995, 2005, and 2015. In general, land utilization in Cipunten Agung classified into protected region and cultivated region. In 2011, total of protected area is 885.80 ha or 22.54% of watershed area. Those conditions affected both positively to the community development and negatively to the water quantity condition in Cipunten Agung such as flooding, run off, and erosion. Therefore, the purpose of this research is to analyze LUCC impacts to run off potential in Cipunten Agung watershed. Supervised classification method and Soil Conservation Services (Qscs) approach were correlated to determine the figure out an optimal solution to reduce the rate of LUCC. Cipunten Agung watershed imagery was classified into five classes, namely water bodies, forest, cultivated tree, settlement and paddy field. The result shows that area of cultivation tree and paddy fields are larger than others in midstream, and settlement is denser in downstream, particularly at riparian landscapes. The LUCC into paddy field often occur at two period 1995 to 2005 and 2005 to 2015 with several area are 530.92 ha and 388.17 ha. The Qscs method calculation result for 1995 until 2015 was affected by land use cover composition in each year and it was defined by Curve Number (CN). High rainfall in 1995 was generating high run off potential volume. Nevertheless, curve number value was increase get near to 100, which indicate the potential of run off volume increases along with LUCC in each year, those are 70.95; 72.47; and 72.81.

OpenVIVO: Transparency in Scholarship

Directory of Open Access Journals (Sweden)

Violeta Ilik

2018-03-01

Full Text Available OpenVIVO is a free and open-hosted semantic web platform that anyone can join and that gathers and shares open data about scholarship in the world. OpenVIVO, based on the VIVO open-source platform, provides transparent access to data about the scholarly work of its participants. OpenVIVO demonstrates the use of persistent identifiers, the automatic real-time ingest of scholarly ecosystem metadata, the use of VIVO-ISF and related ontologies, the attribution of work, and the publication and reuse of data—all critical components of presenting, preserving, and tracking scholarship. The system was created by a cross-institutional team over the course of 3 months. The team created and used RDF models for research organizations in the world based on Digital Science GRID data, for academic journals based on data from CrossRef and the US National Library of Medicine, and created a new model for attribution of scholarly work. All models, data, and software are available in open repositories.

How Good is OpenMP

Directory of Open Access Journals (Sweden)

Timothy G. Mattson

2003-01-01

Full Text Available The OpenMP standard defines an Application Programming Interface (API for shared memory computers. Since its introduction in 1997, it has grown to become one of the most commonly used API's for parallel programming. But success in the market doesn't necessarily imply successful computer science. Is OpenMP a "good" programming environment? What does it even mean to call a programming environment good? And finally, once we understand how good or bad OpenMP is; what can we do to make it even better? In this paper, we will address these questions.

Education Scholars' Perceptions and Practices toward Open Access Publishing

Science.gov (United States)

Ellingford, Lori Michelle

2012-01-01

Although open access publishing has been available since 1998, we know little regarding scholars' perceptions and practices toward publishing in open access outlets, especially in the social science community. Open access publishing has been slow to penetrate the field of education, yet the potential impact of open access could make this…

Open your eyes and vote!

CERN Multimedia

Rebecca Leam

The CERN film-making club is organizing the second edition of the CinéGlobe International Short Film Festival and everyone is invited to attend a series of selection screenings in November to vote on which they like and think should be publicly shown in the Globe and at the Forum Meyrin in February 2010.   This year over 700 short films were submitted for three competitions: the majority for the general fiction category for films up to ten minutes in length, and others for science fiction (20 minutes) and science documentary (30 minutes). “In 2007 we had just one competition open to films from any genre. We decided to add the science related competitions to the second edition to make a stronger link with CERN as a physics lab,” explained Quentin King, Chairman of the Selection Committee and member of CERN’s film-making club, Open Your Eyes Films. “The entries are extremely diverse and touch on almost every aspect of life. The creativity of short...

Software Uncertainty in Integrated Environmental Modelling: the role of Semantics and Open Science

Science.gov (United States)

de Rigo, Daniele

2013-04-01

growing debate on open science and scientific knowledge freedom [2,56-59]. In particular, the role of free software has been underlined within the paradigm of reproducible research [50,58-60]. In the spectrum of reproducibility, the free availability of the source code is emphasized [58] as the first step from non-reproducible research (only based on classic peer-reviewed publications) toward reproducibility. Applying this paradigm to WSTMe, an alternative strategy to black-boxes would suggest exposing not only final outputs but also key intermediate layers of data and information along with the corresponding free software D- TM modules. A concise, semantically-enhanced modularization [14,15] may help not only to see the code (as a very basic prerequisite for semantic transparency) but also to understand - and correct - it [61]. Semantically-enhanced, concise modularization is e.g. supported by semantic array programming (SemAP) [14,15] and its extension to geospatial problems [8,10]. Some WSTMe may surely be classified in the subset of software systems which "are growing well past the ability of a small group of people to completely understand the content", while "data from these systems are often used for critical decision making" [52]. In this context, the further uncertainty arising from the unpredicted "(not to say unpredictable)" [53] behaviour of software errors propagation in WSTMe should be explicitly considered as software uncertainty [62,63]. Thedata and informationflow ofa black- box D-TM isoften a(hidden)compositionofD-TM modules: Semantics and design diversity. Silent faults [64] are a critical class of software errors altering computation output without evident symptoms - such as computation premature interruption (exceptions, error messages, ...), obviously unrealistic results or computation patterns (e.g. noticeably shorter/longer or endless computations). As it has been underlined, "many scientific results are corrupted, perhaps fatally so, by

Opening science the evolving guide on how the Internet is changing research, collaboration and scholarly publishing

CERN Document Server

Friesike, Sascha

2014-01-01

Modern information and communication technologies, together with a cultural upheaval within the research community, have profoundly changed research in nearly every aspect. Ranging from sharing and discussing ideas in social networks for scientists to new collaborative environments and novel publication formats, knowledge creation and dissemination as we know it is experiencing a vigorous shift towards increased transparency, collaboration and accessibility. Many assume that research workflows will change more in the next 20 years than they have in the last 200. This book provides researchers, decision makers, and other scientific stakeholders with a snapshot of the basics, the tools, and the underlying visions that drive the current scientific (r)evolution, often called ‘Open Science.’

Hematology - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

Lifescience Database Archive (English)

Full Text Available ivo tests. Data file File name: open_tggates_hematology.zip File URL: ftp://ftp.biosciencedbc.jp/archive/ope...n-tggates/LATEST/open_tggates_hematology.zip File size: 636 KB Simple search URL ...http://togodb.biosciencedbc.jp/togodb/view/open_tggates_hematology#en Data acquisition method - Data analysi

Stakeholder values and ecosystems in developing open access to research data.

Science.gov (United States)

Wessels, Bridgette; Sveinsdottir, Thordis; Smallwood, Rod

2014-05-01

One aspect of understanding how to develop open access to research data is to understand the values of stakeholders in the emerging open data ecosystem. The EU FP7 funded project Policy RECommendations for Open Access to Research Data in Europe (RECODE) (Grant Agreement No: 321463) undertook such research to identify stakeholder values and mapped the emerging ecosystem. In this paper we outline and discuss the findings of this research. We address three key objectives, which are: (a) the identification and mapping of the diverse range of stakeholder values in Open Access data and data dissemination and preservation; (b) mapping stakeholder values on to research ecosystems using case studies from different disciplinary perspectives; and (c) evaluate and identify good practice in addressing conflicting value chains and stakeholder fragmentation. The research was structured on three related actions: (a) an analysis of policy and related documents and protocols, in order to map the formal expression of values and motivations; (b) conducting five case studies in particle physics, health sciences, bioengineering, environmental research and archaeology. These explored issues of data size; quality control, ethics and data security; replication of large datasets; interoperability; and the preservation of diverse types of data; and (c) undertaking a validation and dissemination workshop that sought to better understand how to match policies with stakeholder drivers and motivations to increase their effectiveness in promoting Open Access to research data. The research findings include that there is clearly an overall drive for Open Data Access within the policy documents, which is part of a wider drive for open science in general. This is underpinned by the view of science as an open enterprise. Although there is a strong argument for publicly funded science to be made open to the public the details of how to make research data open as yet still unclear. Our research found

Downscaling socio-economic prospective scenarios with a participatory approach for assessing the possible impacts of future land use and cover changes on the vulnerability of societies to mountain risks

Science.gov (United States)

Grémont, Marine; Houet, Thomas

2015-04-01

Due to the peculiarities of their landscapes and topography, mountain areas bring together a large range of socio-economic activities whose sustainability is likely to be jeopardised by projected global changes. Disturbance of hydro-meteorological processes will alter slope stability and affect mountain hazards occurrence. Meanwhile, socio-economic transformations will influence land use and cover changes (LUCC), which in turn will affect both hazards occurrence and hazards consequences on buildings, infrastructures and societies. Already faced with recurrent natural hazards, mountain areas will have to cope with increasing natural risks in the future. Better understanding the pathways through which future socio-economic changes might influence LUCC at local scale is thus a crucial step to assess accurately the vulnerability and adaptive capacity of societies to mountain risks in a global change context. Scientists face two main issues in assessing spatially explicit impacts of socio-economic scenarios in mountainous landscapes. First, modelling LUCC at local scale still faces many challenges related to past (observed) LUCC and those to consider in the future in terms of dynamics and processes. Second, downscaling global socio-economic scenarios so that they provide useful input for local LUCC models requires a thorough analysis of local social dynamics and economic drivers at stake, which falls short with current practices. Numerous socio-economic prospective scenarios have recently been developed at regional, national and international scales. They mostly rely on literature reviews and expert workshops carried out through global sectoral analysis (e.g. agriculture, forestry or industry) but only few of these exercises attempt to decline global scenarios at smaller scales confronting global vision with information gathered from the field and stakeholders. Yet, vulnerability assessments are more useful when undertaken at local scales that are relevant to

Pioneering SESAME light source officially opened

CERN Multimedia

Caraban Gonzalez, Noemi

2017-01-01

Allan, Jordan, 16 May 2017. The SESAME light source was today officially opened by His Majesty King Abdullah II. An intergovernmental organization, SESAME is the first regional laboratory for the Middle East and neighbouring regions The laboratory’s official opening ushers in a new era of research covering fields ranging from medicine and biology, through materials science, physics and chemistry to healthcare, the environment, agriculture and archaeology.

Listmania. How lists can open up fresh possibilities for research in the history of science.

Science.gov (United States)

Delbourgo, James; Müller-Wille, Staffan

2012-12-01

Anthropologists, linguists, cultural historians, and literary scholars have long emphasized the value of examining writing as a material practice and have often invoked the list as a paradigmatic example thereof. This Focus section explores how lists can open up fresh possibilities for research in the history of science. Drawing on examples from the early modern period, the contributors argue that attention to practices of list making reveals important relations between mercantile, administrative, and scientific attempts to organize the contents of the world. Early modern lists projected both spatial and temporal visions of nature: they inventoried objects in the process of exchange and collection; they projected possible trajectories for future endeavor; they publicized the social identities of scientific practitioners; and they became research tools that transformed understandings of the natural order.

Physical Science Informatics: Providing Open Science Access to Microheater Array Boiling Experiment Data

Science.gov (United States)

McQuillen, John; Green, Robert D.; Henrie, Ben; Miller, Teresa; Chiaramonte, Fran

2014-01-01

The Physical Science Informatics (PSI) system is the next step in this an effort to make NASA sponsored flight data available to the scientific and engineering community, along with the general public. The experimental data, from six overall disciplines, Combustion Science, Fluid Physics, Complex Fluids, Fundamental Physics, and Materials Science, will present some unique challenges. Besides data in textual or numerical format, large portions of both the raw and analyzed data for many of these experiments are digital images and video, requiring large data storage requirements. In addition, the accessible data will include experiment design and engineering data (including applicable drawings), any analytical or numerical models, publications, reports, and patents, and any commercial products developed as a result of the research. This objective of paper includes the following: Present the preliminary layout (Figure 2) of MABE data within the PSI database. Obtain feedback on the layout. Present the procedure to obtain access to this database.

Pathological items - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

Lifescience Database Archive (English)

Full Text Available . Data file File name: open_tggates_pathology.zip File URL: ftp://ftp.biosciencedbc.jp/archive/open-tggates/LATEST/open_tggates_patho...b.biosciencedbc.jp/togodb/view/open_tggates_pathology#en Data acquisition method We prepared hematoxylin-eos...logy.zip File size: 89 KB Simple search URL http://togod

Making the innovation case in Open Access scholary communication

CERN Multimedia

CERN. Geneva

2005-01-01

It seems almost unnecessary to have to elaborate additional reasons for the adoption of Open Access scholarly communication (OA sc) as manifested through Open Access journals and self-archiving practices. To those active within the OA arena, the case has been convincingly made, and current arguments merely need to be disseminated beyond the Library and Information Science (LIS) sphere. However, it is my contention that a convincing argument for OA sc needs to be launched from the Science Policy perspective if any government mandated pro-OA policy changes are to be effected. This paper, then, is an attempt at taking the OA discussion beyond the LIS arena and into the realm of Science and Innovation Policy. Using Innovation Theory as its theoretical framework, it is argued that Open Access scholarly communication can only serve to bolster Innovation Systems, be they national, regional, or sectoral. The case of South Africa is taken as an illustrative example, though the case can and will be generalised to beyon...

Open data science technical and cultural aspects

CERN Multimedia

CERN. Geneva

2005-01-01

Research in STM fields routinely generates and requires large amounts of data in electronic form. The growth of scientific research using infrastructures such as the Grid, UK's eScience programme and cyber infrastructure requires the re-use, repurposing and redissemination of this information. Fields like bioinformatics, astronomy, physics, and earth/environmental sciences routinely use such data as primary research input. Much of this is now carried out by machines which harvest data from multiple sources in dynamic and iterative ways, validate, filter compute and republish it. The current publication process and legal infrastructure is now a serious hindrance to this. Most STM data are never published and the re-usability of those that are is often unclear as authors and publishers give no explicit permission. However almost all authors intend that published data (non-copyrightable “facts”) are for the re-use of and redissemination to the STM community and the world in general. Many publishers agree wit...

Evaluating the impact of distance measures on deforestation simulations in the fluvial landscapes of amazonia.

Science.gov (United States)

Salonen, Maria; Maeda, Eduardo Eiji; Toivonen, Tuuli

2014-10-01

Land use and land cover change (LUCC) models frequently employ different accessibility measures as a proxy for human influence on land change processes. Here, we simulate deforestation in Peruvian Amazonia and evaluate different accessibility measures as LUCC model inputs. We demonstrate how the selection, and different combinations, of accessibility measures impact simulation results. Out of the individual measures, time distance to market center catches the essential aspects of accessibility in our study area. The most accurate simulation is achieved when time distance to market center is used in association with distance to transport network and additional landscape variables. Although traditional Euclidean measures result in clearly lower simulation accuracy when used separately, the combination of two complementary Euclidean measures enhances simulation accuracy significantly. Our results highlight the need for site and context sensitive selection of accessibility variables. More sophisticated accessibility measures can potentially improve LUCC models' spatial accuracy, which often remains low.

African Journals Online: Veterinary Science

African Journals Online (AJOL)

Items 1 - 15 of 15 ... African Journals Online: Veterinary Science ... Browse By Category · Browse Alphabetically · Browse By Country · List All Titles · Free to read Titles This Journal is Open Access ... Life Sciences, Chemistry, Mathematics & Physics, Earth Sciences ... The Nigerian Journal of Animal Science (NJAS) is an official ...

Enabling FAIR and Open Data - The Importance of Communities on Influencing Change

Science.gov (United States)

Stall, S.; Lehnert, K.; Robinson, E.; Parsons, M. A.; Hanson, B.; Cutcher-Gershenfeld, J.; Nosek, B.

2017-12-01

Our research ecosystem is diverse and dependent on many interacting stakeholders that influence and support the process of science. These include funders, institutions, libraries, publishers, researchers, data managers, repositories, archives and communities. Process improvement in this ecosystem thus usually needs support by more than one of these many stakeholders. For example, mandates for open data extend across this ecosystem. Solutions require these stakeholders to come together and agree upon improvements. Recently, the value of FAIR and Open Data has encouraged funders to sponsor discussions with tangible agreements that include the steps needed to move the ecosystem towards results. Work by many of these stakeholders over the past years have developed pilot efforts that are ready to be scaled with broader engagement. A partnership of the AGU, Earth Science Information Partners (ESIP), Research Data Alliance (RDA), Center for Open Science, and key publishers including Science, Nature, and the Proceedings of the National Academy of Science (PNAS) have agreed to work together to develop integrated processes, leveraging these pilots, to make FAIR and open data the default for Earth and space science publications. This effort will build on the work of COPDESS.org, ESIP, RDA, the scientific journals, and domain repositories to ensure that well documented data, preserved in a repository with community agreed-upon metadata, and supporting persistent identifiers becomes part of the expected research products submitted in support of each publication.

The Open Science Grid – Support for Multi-Disciplinary Team Science – the Adolescent Years

International Nuclear Information System (INIS)

Bauerdick, Lothar; Ernst, Michael; Fraser, Dan; Livny, Miron; Pordes, Ruth; Sehgal, Chander; Würthwein, Frank

2012-01-01

As it enters adolescence the Open Science Grid (OSG) is bringing a maturing fabric of Distributed High Throughput Computing (DHTC) services that supports an expanding HEP community to an increasingly diverse spectrum of domain scientists. Working closely with researchers on campuses throughout the US and in collaboration with national cyberinfrastructure initiatives, we transform their computing environment through new concepts, advanced tools and deep experience. We discuss examples of these including: the pilot-job overlay concepts and technologies now in use throughout OSG and delivering 1.4 Million CPU hours/day; the role of campus infrastructures- built out from concepts of sharing across multiple local faculty clusters (made good use of already by many of the HEP Tier-2 sites in the US); the work towards the use of clouds and access to high throughput parallel (multi-core and GPU) compute resources; and the progress we are making towards meeting the data management and access needs of non-HEP communities with general tools derived from the experience of the parochial tools in HEP (integration of Globus Online, prototyping with IRODS, investigations into Wide Area Lustre). We will also review our activities and experiences as HTC Service Provider to the recently awarded NSF XD XSEDE project, the evolution of the US NSF TeraGrid project, and how we are extending the reach of HTC through this activity to the increasingly broad national cyberinfrastructure. We believe that a coordinated view of the HPC and HTC resources in the US will further expand their impact on scientific discovery.

A Vision for Open Cyber-Scholarly Infrastructures

Directory of Open Access Journals (Sweden)

Costantino Thanos

2016-05-01

Full Text Available The characteristics of modern science, i.e., data-intensive, multidisciplinary, open, and heavily dependent on Internet technologies, entail the creation of a linked scholarly record that is online and open. Instrumental in making this vision happen is the development of the next generation of Open Cyber-Scholarly Infrastructures (OCIs, i.e., enablers of an open, evolvable, and extensible scholarly ecosystem. The paper delineates the evolving scenario of the modern scholarly record and describes the functionality of future OCIs as well as the radical changes in scholarly practices including new reading, learning, and information-seeking practices enabled by OCIs.

OpenEarth : Using Google Earth as outreach for NCK's data

NARCIS (Netherlands)

de Boer, G.J.; Baart, F.; Bruens, A.; Damsma, T.; van Geer, P.; Grasmeijer, B.; den Heijer, C.; van Koningsveld, M.; Santinelli, G.

2012-01-01

In 2003 various projects at Deltares and the TU-Delft merged their toolboxes for marine and coastal science and engineering into one toolbox, culminating in 2008 in an open source release, known as OpenEarthTools (OET). OpenEarth adopts the wikipedia approach to growth: web 2.0 crowd sourcing. All

Land use and carbon dynamics in the southeastern United States from 1992 to 2050

International Nuclear Information System (INIS)

Zhao, Shuqing; Liu, Shuguang; Sohl, Terry; Werner, Jeremy; Young, Claudia

2013-01-01

Land use and land cover change (LUCC) plays an important role in determining the spatial distribution, magnitude, and temporal change of terrestrial carbon sources and sinks. However, the impacts of LUCC are not well understood and quantified over large areas. The goal of this study was to quantify the spatial and temporal patterns of carbon dynamics in various terrestrial ecosystems in the southeastern United States from 1992 to 2050 using a process-based modeling system and then to investigate the impacts of LUCC. Spatial LUCC information was reconstructed and projected using the FOREcasting SCEnarios of future land cover (FORE-SCE) model according to information derived from Landsat observations and other sources. Results indicated that urban expansion (from 3.7% in 1992 to 9.2% in 2050) was expected to be the primary driver for other land cover changes in the region, leading to various declines in forest, cropland, and hay/pasture. The region was projected to be a carbon sink of 60.4 gC m −2  yr −1 on average during the study period, primarily due to the legacy impacts of large-scale conversion of cropland to forest that happened since the 1950s. Nevertheless, the regional carbon sequestration rate was expected to decline because of the slowing down of carbon accumulation in aging forests and the decline of forest area. (letter)

Prediction of Land Use Change in Long Island Sound Watersheds Using Nighttime Light Data

Directory of Open Access Journals (Sweden)

Ruiting Zhai

2016-12-01

Full Text Available The Long Island Sound Watersheds (LISW are experiencing significant land use/cover change (LUCC, which affects the environment and ecosystems in the watersheds through water pollution, carbon emissions, and loss of wildlife. LUCC modeling is an important approach to understanding what has happened in the landscape and what may change in the future. Moreover, prospective modeling can provide sustainable and efficient decision support for land planning and environmental management. This paper modeled the LUCCs between 1996, 2001 and 2006 in the LISW in the New England region, which experienced an increase in developed area and a decrease of forest. The low-density development pattern played an important role in the loss of forest and the expansion of urban areas. The key driving forces were distance to developed areas, distance to roads, and social-economic drivers, such as nighttime light intensity and population density. In addition, this paper compared and evaluated two integrated LUCC models—the logistic regression–Markov chain model and the multi-layer perception–Markov chain (MLP–MC model. Both models achieved high accuracy in prediction, but the MLP–MC model performed slightly better. Finally, a land use map for 2026 was predicted by using the MLP–MC model, and it indicates the continued loss of forest and increase of developed area.

Understanding Land Use and Land Cover Dynamics from 1976 to 2014 in Yellow River Delta

Directory of Open Access Journals (Sweden)

Baolei Zhang

2017-03-01

Full Text Available Long-term intensive land use/cover changes (LUCCs of the Yellow River Delta (YRD have been happening since the 1960s. The land use patterns of the LUCCs are crucial for bio-diversity conservation and/or sustainable development. This study quantified patterns of the LUCCs, explored the systematic transitions, and identified wetland change trajectory for the period 1976–2014 in the YRD. Landsat imageries of 1976, 1984, 1995, 2006, and 2014 were used to derive nine land use classes. Post classification change detection analysis based on enhanced transition matrix was applied to identify land use dynamics and trajectory of wetland change. The five cartographic outputs for changes in land use underlined major decreases in natural wetland areas and increases in artificial wetland and non-wetland, especially aquafarms, salt pans and construction lands. The systematic transitions in the YRD were wetland degradation, wetland artificialization, and urbanization. Wetland change trajectory results demonstrated that the main wetland changes were wetland degradation and wetland artificialization. Coastline change is the subordinate reason for natural wetland degradation in comparison with human activities. The results of this study allowed for an improvement in the understanding of the LUCC processes and enabled researchers and planners to focus on the most important signals of systematic landscape transitions while also allowing for a better understanding of the proximate causes of changes.

Our path to better science in less time using open data science tools.

Science.gov (United States)

Lowndes, Julia S Stewart; Best, Benjamin D; Scarborough, Courtney; Afflerbach, Jamie C; Frazier, Melanie R; O'Hara, Casey C; Jiang, Ning; Halpern, Benjamin S

2017-05-23

Reproducibility has long been a tenet of science but has been challenging to achieve-we learned this the hard way when our old approaches proved inadequate to efficiently reproduce our own work. Here we describe how several free software tools have fundamentally upgraded our approach to collaborative research, making our entire workflow more transparent and streamlined. By describing specific tools and how we incrementally began using them for the Ocean Health Index project, we hope to encourage others in the scientific community to do the same-so we can all produce better science in less time.

OpenVPN and Multipath TCP

OpenAIRE

Paulus, Aloïs

2015-01-01

Testing the performances of using Multipath TCP and OpenVPN on a consumer grade router to aggregate multiple Internet connections and provide a fast and reliable connection to individuals and small companies. Master [60] en sciences informatiques, Université catholique de Louvain, 2015

Surveying the citizen science landscape: an exploration of the design, delivery and impact of citizen science through the lens of the Open Air Laboratories (OPAL) programme.

Science.gov (United States)

Davies, Linda; Fradera, Roger; Riesch, Hauke; Lakeman-Fraser, Poppy

2016-07-22

This paper provides a short introduction to the topic of citizen science (CS) identifying the shift from the knowledge deficit model to more inclusive, participatory science. It acknowledges the benefits of new technology and the opportunities it brings for mass participation and data manipulation. It focuses on the increase in interest in CS in recent years and draws on experience gained from the Open Air Laboratories (OPAL) programme launched in England in 2007. The drivers and objectives for OPAL are presented together with background information on the partnership, methods and scales. The approaches used by researchers ranged from direct public participation in mass data collection through field surveys to research with minimal public engagement. The supporting services focused on education, particularly to support participants new to science, a media strategy and data services. Examples from OPAL are used to illustrate the different approaches to the design and delivery of CS that have emerged over recent years and the breadth of opportunities for public participation the current landscape provides. Qualitative and quantitative data from OPAL are used as evidence of the impact of CS. While OPAL was conceived ahead of the more recent formalisation of approaches to the design, delivery and analysis of CS projects and their impact, it nevertheless provides a range of examples against which to assess the various benefits and challenges emerging in this fast developing field.

Open-book tests to complement assessment-programmes : Analysis of open and closed-book tests

NARCIS (Netherlands)

Heijne-Penninga, M.; Kuks, J. B. M.; Schonrock-Adema, J.; Snijders, T. A. B.; Cohen-Schotanus, J.

Today's health sciences educational programmes have to deal with a growing and changing amount of knowledge. It is becoming increasingly important for students to be able to use and manage knowledge. We suggest incorporating open-book tests in assessment programmes to meet these changes. This view

Ghana Journal of Science

African Journals Online (AJOL)

The GHANA JOURNAL OF SCIENCE is published jointly by the Council for Scientific and Industrial Research of Ghana and the Ghana Science Association. It is open to all ... the authors belong. The topics need not be related to West Africa.

Tenure-Track Science Faculty and the 'Open Access Citation Effect'

Directory of Open Access Journals (Sweden)

R. Christopher Doty

2013-02-01

Full Text Available INTRODUCTION The observation that open access (OA articles receive more citations than subscription-based articles is known as the OA citation effect (OACE. Implicit in many OACE studies is the belief that authors are heavily invested in the number of citations their articles receive. This study seeks to determine what influence the OACE has on the decision-making process of tenure-track science faculty when they consider where to submit a manuscript for publication. METHODS Fifteen tenure-track faculty members in the Departments of Biology and Chemistry at the University of North Carolina at Chapel Hill participated in semi-structured interviews employing a variation of the critical incident tecnique. RESULTS Seven of the fifteen faculty members said they would consider making a future article freely-available based on the OACE. Due to dramatically different expectations with respect to the size of the OACE, however, only one of them is likely to seriously consider the OACE when deciding where to submit their next manuscript for publication. DISCUSSION Journal reputation and audience, and the quality of the editorial and review process are the most important factors in deciding where to submit a manuscript for publication. Once a subset of journals has satisfied these criteria, financial and access issues compete with the OACE in making a final decision. CONCLUSION In order to increase the number of OA materials, librarians should continue to emphasize depositing pre- and post-prints in disciplinary and institutional repositories and retaining the author rights prior to publication in order to make it possible to do so.

To have your citizen science cake and eat it? Delivering research and outreach through Open Air Laboratories (OPAL).

Science.gov (United States)

Lakeman-Fraser, Poppy; Gosling, Laura; Moffat, Andy J; West, Sarah E; Fradera, Roger; Davies, Linda; Ayamba, Maxwell A; van der Wal, René

2016-07-22

The vast array of citizen science projects which have blossomed over the last decade span a spectrum of objectives from research to outreach. While some focus primarily on the collection of rigorous scientific data and others are positioned towards the public engagement end of the gradient, the majority of initiatives attempt to balance the two. Although meeting multiple aims can be seen as a 'win-win' situation, it can also yield significant challenges as allocating resources to one element means that they may be diverted away from the other. Here we analyse one such programme which set out to find an effective equilibrium between these arguably polarised goals. Through the lens of the Open Air Laboratories (OPAL) programme we explore the inherent trade-offs encountered under four indicators derived from an independent citizen science evaluation framework. Assimilating experience from the OPAL network we investigate practical approaches taken to tackle arising tensions. Working backwards from project delivery to design, we found the following elements to be important: ensuring outputs are fit for purpose, developing strong internal and external collaborations, building a sufficiently diverse partnership and considering target audiences. We combine these 'operational indicators' with four pre-existing 'outcome indicators' to create a model which can be used to shape the planning and delivery of a citizen science project. Our findings suggest that whether the proverb in the title rings true will largely depend on the identification of challenges along the way and the ability to address these conflicts throughout the citizen science project.

Promoting an open research culture

NARCIS (Netherlands)

Nosek, B.A.; Alter, G.; Banks, G.C.; Borsboom, D.; Bowman, S.D.; Breckler, S.J.; Buck, S.; Chambers, C.D.; Chin, G.; Christensen, G.; Contestabile, M.; Dafoe, A.; Eich, E.; Freese, J.; Glennerster, R.; Goroff, D.; Green, D.P.; Hesse, B.; Humphreys, M.; Ishiyama, J.; Karlan, D.; Kraut, A.; Lupia, A.; Mabry, P.; Madon, T.; Malhotra, N.; Mayo-Wilson, E.; McNutt, M.; Miguel, E.; Levy Paluck, E.; Simonsohn, U.; Soderberg, C.; Spellman, B.A.; Turitto, J.; VandenBos, G.; Vazire, S.; Wagenmakers, E.J.; Wilson, R.; Yarkoni, T.

2015-01-01

Transparency, openness, and reproducibility are readily recognized as vital features of science (1, 2). When asked, most scientists embrace these features as disciplinary norms and values (3). Therefore, one might expect that these valued features would be routine in daily practice. Yet, a growing

Open Access Scholarly Publications as OER

Directory of Open Access Journals (Sweden)

Terry Anderson

2013-06-01

Full Text Available This paper presents the rationale, common practices, challenges, and some personal anecdotes from a journal editor on the production, use, and re-use of peer-reviewed scholarly articles as open educational resources (OER. The scholarly and professional discourse related to open educational resources has largely focused on open learning objects, courseware, and textbooks. However, especially in graduate education, articles published in scholarly journals are often a major component of the course content in formal education. In addition, open access journal articles are critical to expanding access to knowledge by scholars in the developing world and in fostering citizen science, by which everyone has access to the latest academic information and research results. In this article, I highlight some of the challenges, economic models, and evidence for quality of open access journal content and look at new affordances provided by the Net for enhanced functionality, access, and distribution.In the 17 years since I graduated with a doctorate degree, the climate and acceptance of open access publishing has almost reversed itself. I recall a conversation with my PhD supervisor in which he argued that publishing online was not a viable option as the product would not have permanency, scholarly recognition, or the prestige of a paper publication. His comments reflect the confusion between online resources and those described as open access, but as well illustrate the change in academic acceptance and use of open access products during the past decade. The evolution from paper to online production and consumption is a disruptive technology in which much lower cost and increased accessibility of online work opens the product to a completely new group of potential users. In the case of OER these consumers are primarily students, but certainly access to scholars from all parts of the globe and the availability to support citizen science (Silvertown, 2009

Awareness and Use of Open Access Scholarly Publications by ...

African Journals Online (AJOL)

The study investigated the awareness and use of Open Access scholarly publications by postgraduate students of Faculty of Science in Ahmadu Bello University Zaria (ABU), Kaduna State, Nigeria. The study was guided by four research objectives namely to determine the channels of awareness of Open Access ...

Usage Trends of Open Access and Local Journals: A Korean Case Study.

Science.gov (United States)

Seo, Jeong-Wook; Chung, Hosik; Yun, Jungmin; Park, Jin Young; Park, Eunsun; Ahn, Yuri

2016-01-01

Articles from open access and local journals are important resources for research in Korea and the usage trends of these articles are important indicators for the assessment of the current research practice. We analyzed an institutional collection of published papers from 1998 to 2014 authored by researchers from Seoul National University, and their references from papers published between 1998 and 2011. The published papers were collected from Web of Science or Scopus and were analyzed according to the proportion of articles from open access journals. Their cited references from published papers in Web of Science were analyzed according to the proportion of local (South Korean) or open access journals. The proportion of open access papers was relatively stable until 2006 (2.5 ~ 5.2% in Web of Science and 2.7 ~ 4.2% in Scopus), but then increased to 15.9% (Web of Science) or 18.5% (Scopus) in 2014. We analyzed 2,750,485 cited references from 52,295 published papers. We found that the overall proportion of cited articles from local journals was 1.8% and that for open access journals was 3.0%. Citations of open access articles have increased since 2006 to 4.1% in 2011, although the increase in open access article citations was less than for open access publications. The proportion of citations from local journals was even lower. We think that the publishing / citing mismatch is a term to describe this difference, which is an issue at Seoul National University, where the number of published papers at open access or local journals is increasing but the number of citations is not. The cause of this discrepancy is multi-factorial but the governmental / institutional policies, social / cultural issues and authors' citing behaviors will explain the mismatch. However, additional measures are also necessary, such as the development of an institutional citation database and improved search capabilities with respect to local and open access documents.

Usage Trends of Open Access and Local Journals: A Korean Case Study

Science.gov (United States)

Chung, Hosik; Yun, Jungmin; Park, Jin Young; Park, Eunsun; Ahn, Yuri

2016-01-01

Articles from open access and local journals are important resources for research in Korea and the usage trends of these articles are important indicators for the assessment of the current research practice. We analyzed an institutional collection of published papers from 1998 to 2014 authored by researchers from Seoul National University, and their references from papers published between 1998 and 2011. The published papers were collected from Web of Science or Scopus and were analyzed according to the proportion of articles from open access journals. Their cited references from published papers in Web of Science were analyzed according to the proportion of local (South Korean) or open access journals. The proportion of open access papers was relatively stable until 2006 (2.5 ~ 5.2% in Web of Science and 2.7 ~ 4.2% in Scopus), but then increased to 15.9% (Web of Science) or 18.5% (Scopus) in 2014. We analyzed 2,750,485 cited references from 52,295 published papers. We found that the overall proportion of cited articles from local journals was 1.8% and that for open access journals was 3.0%. Citations of open access articles have increased since 2006 to 4.1% in 2011, although the increase in open access article citations was less than for open access publications. The proportion of citations from local journals was even lower. We think that the publishing / citing mismatch is a term to describe this difference, which is an issue at Seoul National University, where the number of published papers at open access or local journals is increasing but the number of citations is not. The cause of this discrepancy is multi-factorial but the governmental / institutional policies, social / cultural issues and authors' citing behaviors will explain the mismatch. However, additional measures are also necessary, such as the development of an institutional citation database and improved search capabilities with respect to local and open access documents. PMID:27195948

Usage Trends of Open Access and Local Journals: A Korean Case Study.

Directory of Open Access Journals (Sweden)

Jeong-Wook Seo

Full Text Available Articles from open access and local journals are important resources for research in Korea and the usage trends of these articles are important indicators for the assessment of the current research practice. We analyzed an institutional collection of published papers from 1998 to 2014 authored by researchers from Seoul National University, and their references from papers published between 1998 and 2011. The published papers were collected from Web of Science or Scopus and were analyzed according to the proportion of articles from open access journals. Their cited references from published papers in Web of Science were analyzed according to the proportion of local (South Korean or open access journals. The proportion of open access papers was relatively stable until 2006 (2.5 ~ 5.2% in Web of Science and 2.7 ~ 4.2% in Scopus, but then increased to 15.9% (Web of Science or 18.5% (Scopus in 2014. We analyzed 2,750,485 cited references from 52,295 published papers. We found that the overall proportion of cited articles from local journals was 1.8% and that for open access journals was 3.0%. Citations of open access articles have increased since 2006 to 4.1% in 2011, although the increase in open access article citations was less than for open access publications. The proportion of citations from local journals was even lower. We think that the publishing / citing mismatch is a term to describe this difference, which is an issue at Seoul National University, where the number of published papers at open access or local journals is increasing but the number of citations is not. The cause of this discrepancy is multi-factorial but the governmental / institutional policies, social / cultural issues and authors' citing behaviors will explain the mismatch. However, additional measures are also necessary, such as the development of an institutional citation database and improved search capabilities with respect to local and open access documents.

Body weight - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

Lifescience Database Archive (English)

Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...le URL: ftp://ftp.biosciencedbc.jp/archive/open-tggates/LATEST/open_tggates_body_...atabase Description Download License Update History of This Database Site Policy | Contact Us Body weight - Open TG-GATEs | LSDB Archive ...

The importance of open data and software: Is energy research lagging behind?

International Nuclear Information System (INIS)

Pfenninger, Stefan; DeCarolis, Joseph; Hirth, Lion; Quoilin, Sylvain; Staffell, Iain

2017-01-01

Energy policy often builds on insights gained from quantitative energy models and their underlying data. As climate change mitigation and economic concerns drive a sustained transformation of the energy sector, transparent and well-founded analyses are more important than ever. We assert that models and their associated data must be openly available to facilitate higher quality science, greater productivity through less duplicated effort, and a more effective science-policy boundary. There are also valid reasons why data and code are not open: ethical and security concerns, unwanted exposure, additional workload, and institutional or personal inertia. Overall, energy policy research ostensibly lags behind other fields in promoting more open and reproducible science. We take stock of the status quo and propose actionable steps forward for the energy research community to ensure that it can better engage with decision-makers and continues to deliver robust policy advice in a transparent and reproducible way. - Highlights: • Energy models and data are an important basis for energy policy. • Opening energy models and data benefits actors inside and outside of academia. • Reasons include higher quality science, greater productivity and recognition. • Private barriers must be overcome, but the private and public gains outweigh them. • We provide advice on how and why the community could coordinate a shift to openness.

Open Access Papers Have a Greater Citation Advantage in the Author-Pays Model

Directory of Open Access Journals (Sweden)

Elaine Sullo

2016-03-01

; they also verified that the journals were using the APC model by visiting each journal’s website. Because of the large number of subject areas of the identified journals, the researchers decided to classify the journals into four broader categories: Health Sciences, Life Sciences, Natural Sciences, and Social Sciences and Humanities. To calculate the impact of OA papers, citation per paper (CPP was calculated for each subject area. Impact values were calculated on an annual basis as well. The researchers calculated the citation advantage of OA articles as the “difference between the open access and toll access impacts in terms of a percentage of the latter” (p. 585. Main Results – The authors categorized their findings according to three themes: the growth of APC funded OA papers, the number of OA papers by discipline, and citation advantage of OA vs. TA in general and by subject area. Together, Springer and Elsevier published 18,654 OA papers in the APC journals; this number represents 4.7% of the 396,760 papers published between 2007 and 2011. While the number of OA and TA papers has been growing annually, the number of OA papers has been growing more rapidly compared to the TA papers. In terms of subject areas, Life Sciences had the largest number of OA and TA papers (184,315, followed by Health Sciences (149,341, Natural Sciences (121,274, and Social Sciences and Humanities (42,824. Natural Sciences had the most OA papers (5.7% in terms of the number of papers in this subject area being OA papers, followed by Social Sciences and Humanities (5.2%, Health Sciences (4.6% and Life Sciences (3.6%. Overall, the researchers found that the impact values of OA papers were larger than those of the TA papers for each year examined. In considering subject areas, in all disciplines except Life Sciences, the most highly cited paper in the field is an OA paper. In Life Sciences, the most highly cited TA paper had 2,215 citations, compared to the OA paper, which had 1

Food consumption - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

Lifescience Database Archive (English)

Full Text Available c00954-01-011 Description of data contents The list regarding results of food consumption measurement acquir...ed from rats used in the in vivo tests. Data file File name: open_tggates_food_consumption.zip File URL: ftp...://ftp.biosciencedbc.jp/archive/open-tggates/LATEST/open_tggates_food_consumption....zip File size: 108 KB Simple search URL http://togodb.biosciencedbc.jp/togodb/view/open_tggates_food_consum...ption#en Data acquisition method The amount of daily food intake of the first day is calculated as the amount of food

Open Access Articles Have a Greater Research Impact Than Articles Not Freely Available, A review of: Antelman, Kristin. “Do Open-Access Articles Have a Greater Research Impact?” College & Research Libraries 65.5 (Sep. 2004: 372-82.

Directory of Open Access Journals (Sweden)

Suzanne P. Lewis

2006-09-01

Full Text Available Objective – To ascertain whether open access articles have a greater research impact than articles not freely available, as measured by citations in the ISI Web of Science database. Design – Analysis of mean citation rates of a sample population of journal articles across four disciplines. Setting – Journal literature across the disciplines of philosophy, political science, mathematics, and electrical and electronic engineering. Subjects – A sample of 2,017 articles across the four disciplines published between 2001 and 2002 (for political science, mathematics, and electrical and electronic engineering and between 1999 and 2000 (for philosophy. Methods – A systematic presample of articles for each of the disciplines was taken to calculate the necessary sample sizes. Based on this calculation, articles were sourced from ten leading journals in each discipline. The leading journals in political science, mathematics, and electrical and electronic engineering were defined by ISI’s Journal Citation Reports for 2002. The ten leading philosophy journals were selected using a combination of other methods. Once the sample population had been identified, each article title and the number of citations to each article (in the ISI Web of Science database were recorded. Then the article title was searched in Google and if any freely available full text version was found, the article was classified as open access. The mean citation rate for open access and non‐open access articles in each discipline was identified, and the percentage difference between the means was calculated. Main results – The four disciplines represented a range of open access uptake: 17% of articles in philosophy were open access, 29% in political science, 37% in electrical and electronic engineering, and 69% in mathematics. There was a significant difference in the mean citation rates for open access articles and non‐open access articles in all four disciplines. The

Welcome to Systems — A New Interdisciplinary Open Access Journal for Systems Science and Engineering

Directory of Open Access Journals (Sweden)

Thomas Huynh

2012-04-01

Full Text Available Natural and human-made systems abound around us. Our solar system, the human body, the food chain, and ecosystems are some examples of natural systems. Some human-made systems are transportation systems, weapon systems, computer systems, software systems, satellite communications systems, ships, missile defense systems, health care systems, the internet, financial systems, and regional economies. Understanding of natural systems is essential to the survival of the human species, which is intertwined with the survival of other species on earth. Having the knowledge and ability to build human-made systems is critical to the employment of systems that effectively serve the needs of their users. To gain such understanding and to acquire such knowledge and ability, it is necessary that cutting-edge research in systems science, systems engineering, and systems-related fields continue. This open access journal aims to achieve quick and global dissemination of results of such research. [...

Science and Software

Science.gov (United States)

Zelt, C. A.

2017-12-01

Earth science attempts to understand how the earth works. This research often depends on software for modeling, processing, inverting or imaging. Freely sharing open-source software is essential to prevent reinventing the wheel and allows software to be improved and applied in ways the original author may never have envisioned. For young scientists, releasing software can increase their name ID when applying for jobs and funding, and create opportunities for collaborations when scientists who collect data want the software's creator to be involved in their project. However, we frequently hear scientists say software is a tool, it's not science. Creating software that implements a new or better way of earth modeling or geophysical processing, inverting or imaging should be viewed as earth science. Creating software for things like data visualization, format conversion, storage, or transmission, or programming to enhance computational performance, may be viewed as computer science. The former, ideally with an application to real data, can be published in earth science journals, the latter possibly in computer science journals. Citations in either case should accurately reflect the impact of the software on the community. Funding agencies need to support more software development and open-source releasing, and the community should give more high-profile awards for developing impactful open-source software. Funding support and community recognition for software development can have far reaching benefits when the software is used in foreseen and unforeseen ways, potentially for years after the original investment in the software development. For funding, an open-source release that is well documented should be required, with example input and output files. Appropriate funding will provide the incentive and time to release user-friendly software, and minimize the need for others to duplicate the effort. All funded software should be available through a single web site

Practising science communication in the information age theorising professional practices

CERN Document Server

Holliman, Richard

2008-01-01

What is the impact of open access on science communication? How can scientists effectively engage and interact with the public? What role can science communication have when scientific controversies arise? Practising science communication in the information age is a collection of newly-commissioned chapters by leading scholars and practitioners of science communication. It considers how scientists communicate with each other as part of their professional practice, critically evaluating how this forms the basis of the documenting of scientific knowledge, and investigating how open access publication and open review are influencing current practices. It also explores how science communication can play a crucial role when science is disputed, investigating the role of expertise in the formation of scientific controversy and consensus. The volume provides a theoretically informed review of contemporary trends and issues that are engaging practitioners of science communication, focusing on issues such as the norms...

Revolution of open source and film making towards open film making

OpenAIRE

Löker, Koray

2008-01-01

Ankara : The Department of Communication and Design and the Institute of Economics and Social Sciences of Bilkent University, 2008. Thesis (Master's) -- Bilkent University, 2008. Includes bibliographical references leaves 74-80. This thesis is a critical analysis of self-proclaimed open source movie projects, Elephants Dream and The Digital Tipping Point. The theoretical framework derived from the new media discourse on film making, mainly based on Lev Manovich's database na...

Monte Carlo simulation of second-generation open-type PET ''single-ring OpenPET'' implemented with DOI detectors

International Nuclear Information System (INIS)

Tashima, Hideaki; Yamaya, Taiga; Hirano, Yoshiyuki; Yoshida, Eiji; Kinouch, Shoko; Watanabe, Mitsuo; Tanaka, Eiichi

2013-01-01

At the National Institute of Radiological Sciences, we are developing OpenPET, an open-type positron emission tomography (PET) geometry with a physically open space, which allows easy access to the patient during PET studies. Our first-generation OpenPET system, dual-ring OpenPET, which consisted of two detector rings, could provide an extended axial field of view (FOV) including the open space. However, for applications such as in-beam PET to monitor the dose distribution in situ during particle therapy, higher sensitivity concentrated on the irradiation field is required rather than a wide FOV. In this report, we propose a second-generation OpenPET geometry, single-ring OpenPET, which can efficiently improve sensitivity while providing the required open space. When the proposed geometry was realized with block detectors, position-dependent degradation of the spatial resolution was expected because it was necessary to arrange the detector blocks in ellipsoidal rings stacked and shifted relative to one another. However, we found by Monte Carlo simulation that the use of depth-of-interaction (DOI) detectors made it feasible to achieve uniform spatial resolution in the FOV. (author)

CONFIGURING AND USING OPEN VPN ON WINDOWS OS

OpenAIRE

Ngekeh, Prisca

2016-01-01

Hacking is becoming a more critical issue in the world of science and technology today, hence it is necessary to add more security devices to the network to ensure the security of information. Open virtual private network (OpenVPN) is one among the many ways companies use to securely connect in different locations or a remote user connecting to a company’s network. This thesis work describes how to configure and use OpenVPN with Windows operating system. The following paragraphs discusses wha...

Journal of Chemical Sciences | Indian Academy of Sciences

Indian Academy of Sciences (India)

SN2-type ring opening of substituted--tosylaziridines with zinc (II) halides: Control of racemization by ... The reaction proceeds via an SN2-type pathway and the partial racemization of the starting ... Journal of Chemical Sciences | News.

Managing open innovation projects with science-based and market-based partners

NARCIS (Netherlands)

Du, J.; Leten, B.; Vanhaverbeke, W.

2014-01-01

This paper examines the relationship between (outside-in) open innovation and the financial performance of R&D projects, drawing on a unique dataset that contains information on the open innovation practices, management and performance of 489 R&D projects of a large European multinational firm. We

An Examination of Understandings of Prospective Teachers about Science and Science History

Science.gov (United States)

Yildiz, Cemalettin

2018-01-01

The purpose of this study was to reveal beliefs of prospective teachers about "science" and "science history." The qualitative research approach was employed in the study. The study group consisted of 150 prospective teachers. A form developed by the researcher was used for data collection. The form consisted of open-ended…

The Science Advancement through Group Engagement Program: Leveling the Playing Field and Increasing Retention in Science

Science.gov (United States)

Hall, Donna M.; Curtin-Soydan, Amanda J.; Canelas, Dorian A.

2014-01-01

How can colleges and universities keep an open gateway to the science disciplines for the least experienced first-year science students while also maintaining high standards that challenge the students with the strongest possible high school backgrounds? The Science Advancement through Group Engagement (SAGE) project targets cohorts of less…

Analysis of open source GIS software

OpenAIRE

Božnis, Andrius

2006-01-01

GIS is one of the most perspective information technology sciences sphere. GIS conjuncts the digital image analysis and data base systems. This makes GIS wide applicable and very high skills demanding system. There is a lot of commercial GIS software which is well advertised and which functionality is pretty well known, while open source software is forgotten. In this diploma work is made analysis of available open source GIS software on the Internet, in the scope of different projects interr...

Citizen Science Initiatives: Engaging the Public and Demystifying Science

Directory of Open Access Journals (Sweden)

Kim Van Vliet

2015-12-01

Full Text Available The Internet and smart phone technologies have opened up new avenues for collaboration among scientists around the world. These technologies have also expanded citizen science opportunities and public participation in scientific research (PPSR. Here we discuss citizen science, what it is, who does it, and the variety of projects and methods used to increase scientific knowledge and scientific literacy. We describe a number of different types of citizen-science projects. These greatly increase the number of people involved, helping to speed the pace of data analysis and allowing science to advance more rapidly. As a result of the numerous advantages of citizen-science projects, these opportunities are likely to expand in the future and increase the rate of novel discoveries.

Translating biotechnology to knowledge-based innovation, peace, and development? Deploy a Science Peace Corps--an open letter to world leaders.

Science.gov (United States)

Hekim, Nezih; Coşkun, Yavuz; Sınav, Ahmet; Abou-Zeid, Alaa H; Ağırbaşlı, Mehmet; Akintola, Simisola O; Aynacıoğlu, Şükrü; Bayram, Mustafa; Bragazzi, Nicola Luigi; Dandara, Collet; Dereli, Türkay; Dove, Edward S; Elbeyli, Levent; Endrenyi, Laszlo; Erciyas, Kamile; Faris, Jack; Ferguson, Lynnette R; Göğüş, Fahrettin; Güngör, Kıvanç; Gürsoy, Mervi; Gürsoy, Ulvi K; Karaömerlioğlu, M Asım; Kickbusch, Ilona; Kılıç, Türker; Kılınç, Metin; Kocagöz, Tanıl; Lin, Biaoyang; LLerena, Adrián; Manolopoulos, Vangelis G; Nair, Bipin; Özkan, Bülent; Pang, Tikki; Sardaş, Şemra; Srivastava, Sanjeeva; Toraman, Cengiz; Üstün, Kemal; Warnich, Louise; Wonkam, Ambroise; Yakıcıer, Mustafa Cengiz; Yaşar, Ümit; Özdemir, Vural

2014-07-01

all men can stand adversity, but if you want to test a man's character, give him power." We therefore petition President Barack Obama, other world leaders, and international development agencies in positions of power around the globe, to consider deploying a Science Peace Corps to cultivate the essential (and presently missing) ties among life sciences, foreign policy, development, and peace agendas. A Science Peace Corps requires support by a credible and independent intergovernmental organization or development agency for funding, and arbitration in the course of volunteer work when the global versus local (glocal) value-based priorities and human rights intersect in synergy or conflict. In all, Science Peace Corps is an invitation to a new pathway for competence in 21(st) century science that is locally productive and globally competitive. It can open up scientific institutions to broader considerations and broader inputs, and thus cultivate vital translational science in a world sorely in need of solidarity and sustainable responses to the challenges of 21(st) century science and society.

Journal of Chemical Sciences | Indian Academy of Sciences

Indian Academy of Sciences (India)

Home; Journals; Journal of Chemical Sciences; Volume 129; Issue 6. Metal free synthesis of functionalized 1-aryl isoquinolines via iodine mediated oxidative dehydrogenation and ring opening of lactam in isoindoloisoquinolinones. KAMSALI MURALI MOHAN ACHARI MUTHUPANDI KARTHICK CHINNASAMY RAMARAJ ...

IJ-OpenCV: Combining ImageJ and OpenCV for processing images in biomedicine.

Science.gov (United States)

Domínguez, César; Heras, Jónathan; Pascual, Vico

2017-05-01

The effective processing of biomedical images usually requires the interoperability of diverse software tools that have different aims but are complementary. The goal of this work is to develop a bridge to connect two of those tools: ImageJ, a program for image analysis in life sciences, and OpenCV, a computer vision and machine learning library. Based on a thorough analysis of ImageJ and OpenCV, we detected the features of these systems that could be enhanced, and developed a library to combine both tools, taking advantage of the strengths of each system. The library was implemented on top of the SciJava converter framework. We also provide a methodology to use this library. We have developed the publicly available library IJ-OpenCV that can be employed to create applications combining features from both ImageJ and OpenCV. From the perspective of ImageJ developers, they can use IJ-OpenCV to easily create plugins that use any functionality provided by the OpenCV library and explore different alternatives. From the perspective of OpenCV developers, this library provides a link to the ImageJ graphical user interface and all its features to handle regions of interest. The IJ-OpenCV library bridges the gap between ImageJ and OpenCV, allowing the connection and the cooperation of these two systems. Copyright © 2017 Elsevier Ltd. All rights reserved.

When is multiplication in a Banach algebra open?

Czech Academy of Sciences Publication Activity Database

Draga, Szymon; Kania, Tomasz

2018-01-01

Roč. 538, 1 February (2018), s. 149-165 ISSN 0024-3795 R&D Projects: GA ČR GF16-34860L Institutional support: RVO:67985840 Keywords : Banach algebra * open mapping * uniformly open map Subject RIV: BA - General Mathematics OBOR OECD: Pure mathematics Impact factor: 0.973, year: 2016 http://www.sciencedirect.com/science/ article /pii/S0024379517305761?via%3Dihub

When is multiplication in a Banach algebra open?

Czech Academy of Sciences Publication Activity Database

Draga, Szymon; Kania, Tomasz

2018-01-01

Roč. 538, 1 February (2018), s. 149-165 ISSN 0024-3795 R&D Projects: GA ČR GF16-34860L Institutional support: RVO:67985840 Keywords : Banach algebra * open mapping * uniformly open map Subject RIV: BA - General Mathematics OBOR OECD: Pure mathematics Impact factor: 0.973, year: 2016 http://www.sciencedirect.com/science/article/pii/S0024379517305761?via%3Dihub

How do openers contribute to student learning?

Directory of Open Access Journals (Sweden)

Amber Zertuche

2012-11-01

Full Text Available Openers, or brief activities that initiate a class, routinely take up classroom time each day yet little is known about how to design these activities so they contribute to student learning. This study uses technology-enhanced learning environments to explore new opportunities to transform Openers from potentially busy work to knowledge generating activities. This study compares the impact of teacher-designed Openers, Opener designs based on recent research emphasizing knowledge integration, and no Opener for an 8th grade technology-enhanced inquiry science investigation. Results suggest that students who participate in a researcher-designed Opener are more likely to revisit and refine their work, and to make significant learning gains, than students who do not participate in an Opener. Students make the greatest gains when they revisit key evidence in the technology-enhanced curriculum unit prior to revision. Engaging students in processes that promote knowledge integration during the Opener motivate students to revise their ideas. The results suggest design principles for Openers in technology-enhanced instruction.

Central Computer Science Concepts to Research-Based Teacher Training in Computer Science: An Experimental Study

Science.gov (United States)

Zendler, Andreas; Klaudt, Dieter

2012-01-01

The significance of computer science for economics and society is undisputed. In particular, computer science is acknowledged to play a key role in schools (e.g., by opening multiple career paths). The provision of effective computer science education in schools is dependent on teachers who are able to properly represent the discipline and whose…

Promoting open access to science through effective communication

Science.gov (United States)

Egger, A. E.

2006-12-01

Geology is a difficult subject to communicate effectively. Many people associate geology with memorizing rock and mineral names and not with dynamic earth processes. Even more challenging for the non-geologist is the concept of deep time, and why processes that happened millions of years ago are important to us today. Additionally, many people view science itself as inaccessible and difficult. And yet, geology is a naturally accessible subject, as it is all around us. In order to communicate effectively, geologists must convince others that their work is both accessible and relevant, even though it may not directly generate economic benefits or lend insight into solutions for our modern problems like climate change. As scientists, we know the connections are there, but convincing others requires creating face-to-face, positive interactions through the use of active techniques to help bring the audience to an understanding of the process of science in addition to the subject matter itself. My overarching motive for creating and participating in communication activities with a broad audience is thus to demonstrate that science is accessible to everyone, that a scientific way of thinking can be both fun and useful, and that a little knowledge about geology can give you a new perspective on the world. Using this motivation as a guiding principle regardless of the specific audience, two techniques are important to make the communication effective. First, whenever possible, I conduct activities in the field (broadly speaking), or at least bring the field into the talk, and model the scientific process by asking for participation. This allows the audience to fully understand how geologic work is done, including the mundane and the mistakes. Second, I take my audience seriously, including all questions and observations, in order to build confidence in everyone that they are able to contribute to and understand both geology and the scientific process in general. Despite the

Openness versus Secrecy in Scientific Research Abstract.

Science.gov (United States)

Resnik, David B

2006-02-01

Openness is one of the most important principles in scientific inquiry, but there are many good reasons for maintaining secrecy in research, ranging from the desire to protect priority, credit, and intellectual property, to the need to safeguard the privacy of research participants or minimize threats to national or international security. This article examines the clash between openness and secrecy in science in light of some recent developments in information technology, business, and politics, and makes some practical suggestions for resolving conflicts between openness and secrecy."By academic freedom I understand the right to search for the truth and to publish and teach what one holds to be true. This right also implies a duty; one must not conceal any part of what one has recognized to be true. It is evident that any restriction of academic freedom serves to restrain the dissemination of knowledge, thereby impeding rational judgment and action."Albert Einstein, quotation inscribed on his statute in front of the National Academy of Sciences, Washington, DC.

Fermilab Education Office: Science Adventures

Science.gov (United States)

Search The Education Office: Science Adventures Adventure Catalog Search for Adventures Calendar Class Facebook Group. Contact: Science Adventures Registrar, Education Office Fermilab, MS 777, P.O. Box 500 it again." Opportunities for Instructors The Education Office has openings for instructors who

Amphibian and reptile road-kills on tertiary roads in relation to landscape structure: using a citizen science approach with open-access land cover data.

Science.gov (United States)

Heigl, Florian; Horvath, Kathrin; Laaha, Gregor; Zaller, Johann G

2017-06-26

Amphibians and reptiles are among the most endangered vertebrate species worldwide. However, little is known how they are affected by road-kills on tertiary roads and whether the surrounding landscape structure can explain road-kill patterns. The aim of our study was to examine the applicability of open-access remote sensing data for a large-scale citizen science approach to describe spatial patterns of road-killed amphibians and reptiles on tertiary roads. Using a citizen science app we monitored road-kills of amphibians and reptiles along 97.5 km of tertiary roads covering agricultural, municipal and interurban roads as well as cycling paths in eastern Austria over two seasons. Surrounding landscape was assessed using open access land cover classes for the region (Coordination of Information on the Environment, CORINE). Hotspot analysis was performed using kernel density estimation (KDE+). Relations between land cover classes and amphibian and reptile road-kills were analysed with conditional probabilities and general linear models (GLM). We also estimated the potential cost-efficiency of a large scale citizen science monitoring project. We recorded 180 amphibian and 72 reptile road-kills comprising eight species mainly occurring on agricultural roads. KDE+ analyses revealed a significant clustering of road-killed amphibians and reptiles, which is an important information for authorities aiming to mitigate road-kills. Overall, hotspots of amphibian and reptile road-kills were next to the land cover classes arable land, suburban areas and vineyards. Conditional probabilities and GLMs identified road-kills especially next to preferred habitats of green toad, common toad and grass snake, the most often found road-killed species. A citizen science approach appeared to be more cost-efficient than monitoring by professional researchers only when more than 400 km of road are monitored. Our findings showed that freely available remote sensing data in combination with a

OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system.

Science.gov (United States)

Senderov, Viktor; Simov, Kiril; Franz, Nico; Stoev, Pavel; Catapano, Terry; Agosti, Donat; Sautter, Guido; Morris, Robert A; Penev, Lyubomir

2018-01-18

The biodiversity domain, and in particular biological taxonomy, is moving in the direction of semantization of its research outputs. The present work introduces OpenBiodiv-O, the ontology that serves as the basis of the OpenBiodiv Knowledge Management System. Our intent is to provide an ontology that fills the gaps between ontologies for biodiversity resources, such as DarwinCore-based ontologies, and semantic publishing ontologies, such as the SPAR Ontologies. We bridge this gap by providing an ontology focusing on biological taxonomy. OpenBiodiv-O introduces classes, properties, and axioms in the domains of scholarly biodiversity publishing and biological taxonomy and aligns them with several important domain ontologies (FaBiO, DoCO, DwC, Darwin-SW, NOMEN, ENVO). By doing so, it bridges the ontological gap across scholarly biodiversity publishing and biological taxonomy and allows for the creation of a Linked Open Dataset (LOD) of biodiversity information (a biodiversity knowledge graph) and enables the creation of the OpenBiodiv Knowledge Management System. A key feature of the ontology is that it is an ontology of the scientific process of biological taxonomy and not of any particular state of knowledge. This feature allows it to express a multiplicity of scientific opinions. The resulting OpenBiodiv knowledge system may gain a high level of trust in the scientific community as it does not force a scientific opinion on its users (e.g. practicing taxonomists, library researchers, etc.), but rather provides the tools for experts to encode different views as science progresses. OpenBiodiv-O provides a conceptual model of the structure of a biodiversity publication and the development of related taxonomic concepts. It also serves as the basis for the OpenBiodiv Knowledge Management System.

Imbibition of ``Open Capillary'': Fundamentals and Applications

Science.gov (United States)

Tani, Marie; Kawano, Ryuji; Kamiya, Koki; Okumura, Ko

2015-11-01

Control or transportation of small amount of liquid is one of the most important issues in various contexts including medical sciences or pharmaceutical industries to fuel delivery. We studied imbibition of ``open capillary'' both experimentally and theoretically, and found simple scaling laws for both statics and dynamics of the imbibition, similarly as that of imbibition of capillary tubes. Furthermore, we revealed the existence of ``precursor film,'' which developed ahead of the imbibing front, and the dynamics of it is described well by another scaling law for capillary rise in a corner. Then, to show capabilities of open capillaries, we demonstrated two experiments by fabricating micro mixing devices to achieve (1) simultaneous multi-color change of the Bromothymol blue (BTB) solution and (2) expression of the green florescent protein (GFP). This research was partly supported by ImPACT Program of Council for Science, Technology and Innovation (Cabinet Office, Government of Japan). M. T. is supported by the Japan Society for the Promotion of Science Research Fellowships for Young Scientists.

OpenHealth Platform for Interactive Contextualization of Population Health Open Data

OpenAIRE

Almeida, Jonas S; Hajagos, Janos; Crnosija, Ivan; Kurc, Tahsin; Saltz, Mary; Saltz, Joel

2015-01-01

The financial incentives for data science applications leading to improved health outcomes, such as DSRIP (bit.ly/dsrip), are well-aligned with the broad adoption of Open Data by State and Federal agencies. This creates entirely novel opportunities for analytical applications that make exclusive use of the pervasive Web Computing platform. The framework described here explores this new avenue to contextualize Health data in a manner that relies exclusively on the native JavaScript interpreter...

Editorial: The FQS-Issue "Doing Biographical Research". Four Years of Publishing FQS as an Example for Social Science Open Access Journals

Directory of Open Access Journals (Sweden)

Katja Mruck

2003-09-01

Full Text Available In FQS 4(3—"Doing Biographical Research"—social scientists discuss from different disciplinary and national stances the interview with Hülya, a Turkish migrant living and working in Germany. In addition to contributions linked directly to the issue topic, eight single contributions, nine review essays and review notes and two conference reports are published, coming from researchers from eight nations and seven academic disciplines. Approximately 450 articles have been published since the first FQS issue was accessible on-line in January 2000. In addition to the contributions to the new issue "Doing Biographical Research," the current state of FQS is briefly reviewed. FQS is also discussed as an example for social science open access journals, being part of the open access initiatives which aim to make scientific information accessible worldwide free of cost. URN: urn:nbn:de:0114-fqs0303176

Citizen Science and the Modern Web

CERN Multimedia

CERN. Geneva

2014-01-01

Beginning as a research project to help scientists communicate, the Web has transformed into a ubiquitous medium. As the sciences continue to transform, new techniques are needed to analyze the vast amounts of data being produced by large experiments. The advent of the Sloan Digital Sky Survey increased throughput of astronomical data, giving rise to Citizen Science projects such as Galaxy Zoo. The Web is no longer exclusively used by researchers, but rather, a place where anyone can share information, or even, partake in citizen science projects. As the Web continues to evolve, new and open technologies enable web applications to become more sophisticated. Scientific toolsets may now target the Web as a platform, opening an application to a wider audience, and potentially citizen scientists. With the latest browser technologies, scientific data may be consumed and visualized, opening the browser as a new platform for scientific analysis.

"helix Nebula - the Science Cloud", a European Science Driven Cross-Domain Initiative Implemented in via AN Active Ppp Set-Up

Science.gov (United States)

Lengert, W.; Mondon, E.; Bégin, M. E.; Ferrer, M.; Vallois, F.; DelaMar, J.

2015-12-01

Helix Nebula, a European science cross-domain initiative building on an active PPP, is aiming to implement the concept of an open science commons[1] while using a cloud hybrid model[2] as the proposed implementation solution. This approach allows leveraging and merging of complementary data intensive Earth Science disciplines (e.g. instrumentation[3] and modeling), without introducing significant changes in the contributors' operational set-up. Considering the seamless integration with life-science (e.g. EMBL), scientific exploitation of meteorological, climate, and Earth Observation data and models open an enormous potential for new big data science. The work of Helix Nebula has shown that is it feasible to interoperate publicly funded infrastructures, such as EGI [5] and GEANT [6], with commercial cloud services. Such hybrid systems are in the interest of the existing users of publicly funded infrastructures and funding agencies because they will provide "freedom and choice" over the type of computing resources to be consumed and the manner in which they can be obtained. But to offer such freedom and choice across a spectrum of suppliers, various issues such as intellectual property, legal responsibility, service quality agreements and related issues need to be addressed. Finding solutions to these issues is one of the goals of the Helix Nebula initiative. [1] http://www.egi.eu/news-and-media/publications/OpenScienceCommons_v3.pdf [2] http://www.helix-nebula.eu/events/towards-the-european-open-science-cloud [3] e.g. https://sentinel.esa.int/web/sentinel/sentinel-data-access [5] http://www.egi.eu/ [6] http://www.geant.net/

75 FR 49500 - National Institute of Environmental Health Sciences; Notice of Meeting

Science.gov (United States)

2010-08-13

... Environmental Health Sciences; Notice of Meeting Pursuant to section 10(d) of the Federal Advisory Committee Act... Environmental Health Sciences Council. The meeting will be open to the public as indicated below, with... Committee: National Advisory Environmental Health Sciences Council. Date: September 1-2, 2010. Open...

An open future for ecological and evolutionary data?

Science.gov (United States)

Kenall, Amye; Harold, Simon; Foote, Christopher

2014-04-02

As part of BioMed Central's open science mission, we are pleased to announce that two of our journals have integrated with the open data repository Dryad. Authors submitting their research to either BMC Ecology or BMC Evolutionary Biology will now have the opportunity to deposit their data directly into the Dryad archive and will receive a permanent, citable link to their dataset. Although this does not affect any of our current data deposition policies at these journals, we hope to encourage a more widespread adoption of open data sharing in the fields of ecology and evolutionary biology by facilitating this process for our authors. We also take this opportunity to discuss some of the wider issues that may concern researchers when making their data openly available. Although we offer a number of positive examples from different fields of biology, we also recognise that reticence to data sharing still exists, and that change must be driven from within research communities in order to create future science that is fit for purpose in the digital age. This editorial was published jointly in both BMC Ecology and BMC Evolutionary Biology.

Open Access Publishing in the Field of Medical Informatics.

Science.gov (United States)

Kuballa, Stefanie

2017-05-01

The open access paradigm has become an important approach in today's information and communication society. Funders and governments in different countries stipulate open access publications of funded research results. Medical informatics as part of the science, technology and medicine disciplines benefits from many research funds, such as National Institutes of Health in the US, Wellcome Trust in UK, German Research Foundation in Germany and many more. In this study an overview of the current open access programs and conditions of major journals in the field of medical informatics is presented. It was investigated whether there are suitable options and how they are shaped. Therefore all journals in Thomson Reuters Web of Science that were listed in the subject category "Medical Informatics" in 2014 were examined. An Internet research was conducted by investigating the journals' websites. It was reviewed whether journals offer an open access option with a subsequent check of conditions as for example the type of open access, the fees and the licensing. As a result all journals in the field of medical informatics that had an impact factor in 2014 offer an open access option. A predominantly consistent pricing range was determined with an average fee of 2.248 € and a median fee of 2.207 €. The height of a journals' open access fee did not correlate with the height of its Impact Factor. Hence, medical informatics journals have recognized the trend of open access publishing, though the vast majority of them are working with the hybrid method. Hybrid open access may however lead to problems in questions of double dipping and the often stipulated gold open access.

Navigating the unfolding open data landscape in ecology and evolution

NARCIS (Netherlands)

Culina, A.; Baglioni, Miriam; Crowther, Thomas W.; Visser, M.E.; Woutersen-Windhouwer, S.; Manghi, P.

2018-01-01

Open access to data is revolutionizing the sciences. To allow ecologists and evolutionary biologists to confidently find and use the existing data, we provide an overview of the landscape of online data infrastructures, and highlight the key points to consider when using open data. We introduce an

An Alternative Approach to Overcome the Limitation of HRUs in Analyzing Hydrological Processes Based on Land Use/Cover Change

Directory of Open Access Journals (Sweden)

Fanhao Meng

2018-04-01

Full Text Available Since the concept of hydrological response units (HRUs is used widely in hydrological modeling, the land use change scenarios analysis based on HRU may have direct influence on hydrological processes due to its simplified flow routing and HRU spatial distribution. This paper intends to overcome this issue based on a new analysis approach to explain what impacts for the impact of land use/cover change on hydrological processes (LUCCIHP, and compare whether differences exist between the conventional approach and the improved approach. Therefore, we proposed a sub-basin segmentation approach to obtain more reasonable impact assessment of LUCC scenario by re-discretizing the HRUs and prolonging the flow path in which the LUCC occurs. As a scenario study, the SWAT model is used in the Aksu River Basin, China, to simulate the response of hydrological processes to LUCC over ten years. Moreover, the impacts of LUCC on hydrological processes before and after model modification are compared and analyzed at three levels (catchment scale, sub-basin scale and HRU scale. Comparative analysis of Nash–Sutcliffe coefficient (NSE, RSR and Pbias, model simulations before and after model improvement shows that NSE increased by up to 2%, RSR decreased from 0.73 to 0.72, and Pbias decreased from 0.13 to 0.05. The major LUCCs affecting hydrological elements in this basin are related to the degradation of grassland and snow/ice and expansion of farmland and bare land. Model simulations before and after model improvement show that the average variation of flow components in typical sub-basins (surface runoff, lateral flow and groundwater flow are changed by +11.09%, −4.51%, and −6.58%, and +10.53%, −1.55%, and −8.98% from the base period model scenario, respectively. Moreover, the spatial response of surface runoff at the HRU level reveals clear spatial differences between before and after model improvement. This alternative approach illustrates the potential

Response of evapotranspiration to changes in land use and land cover and climate in China during 2001-2013.

Science.gov (United States)

Li, Gen; Zhang, Fangmin; Jing, Yuanshu; Liu, Yibo; Sun, Ge

2017-10-15

Land surface evapotranspiration (ET) is a central component of the Earth's global energy balance and water cycle. Understanding ET is important in quantifying the impacts of human influences on the hydrological cycle and thus helps improving water use efficiency and strengthening water use planning and watershed management. China has experienced tremendous land use and land cover changes (LUCC) as a result of urbanization and ecological restoration under a broad background of climate change. This study used MODIS data products to analyze how LUCC and climate change affected ET in China in the period 2001-2013. We examined the separate contribution to the estimated ET changes by combining LUCC and climate data. Results showed that the average annual ET in China decreased at a rate of -0.6mm/yr from 2001 to 2013. Areas in which ET decreased significantly were mainly distributed in the northwest China, the central of southwest China, and most regions of south central and east China. The trends of four climatic factors including air temperature, wind speed, sunshine duration, and relative humidity were determined, while the contributions of these four factors to ET were quantified by combining the ET and climate datasets. Among the four climatic factors, sunshine duration and wind speed had the greatest influence on ET. LUCC data from 2001 to 2013 showed that forests, grasslands and croplands in China mutually replaced each other. The reduction of forests had much greater effects on ET than change by other land cover types. Finally, through quantitative separation of the distinct effects of climate change and LUCC on ET, we conclude that climate change was the more significant than LULC change in influencing ET in China during the period 2001-2013. Effective water resource management and vegetation-based ecological restoration efforts in China must consider the effects of climate change on ET and water availability. Copyright © 2017 Elsevier B.V. All rights reserved.

Monitoring and Analysing Land Use/Cover Changes in an Arid Region Based on Multi-Satellite Data: The Kashgar Region, Northwest China

Directory of Open Access Journals (Sweden)

Ayisulitan Maimaitiaili

2018-01-01

Full Text Available In arid regions, oases ecosystems are fragile and sensitive to climate change, and water is the major limiting factor for environmental and socio-economic developments. Understanding the drivers of land use/cover change (LUCC in arid regions is important for the development of management strategies to improve or prevent environmental deterioration and loss of natural resources. The Kashgar Region is the key research area in this study; it is a typical mountain-alluvial plain-oasis-desert ecosystem in an arid region, and is one of the largest oases in Xinjiang Uyghur Autonomous Region, China. In addition, the Kashgar Region is an important cotton and grain production area. This study’s main objectives are to quantify predominant LUCCs and identify their driving forces, based on the integration of multiple remote sensors and applications of environmental and socio-economic data. Results showed that LUCCs have been significant in the Kashgar Region during the last 42 years. Cultivated land and urban/built-up lands were the most changed land cover (LC, by 3.6% and 0.4% from 1972 to 10.2% and 3% in 2014, respectively. By contrast, water and forest areas declined. Grassland and snow-covered areas have fluctuated along with climate and human activities. Bare land was changed slightly from 1972 to 2014. According to the land use transfer matrix, cultivated land replaced grass- and forestland. Urban/built-up land mainly expanded over cultivated and bare land. LUCCs were triggered by the interplay of natural and social drivers. Increasing runoff, caused by regional climate changes in seasonal variation, and snow melt water, have provided water resources for LC changes. In the same way, population growth, changes in land tenure, and socio-economic development also induced LUCCs. However, expansion of cultivated land and urban/built-up land led to increased water consumption and stressed fragile water systems during on-going climate changes. Therefore

Land use/land cover change geo-informative Tupu of Nujiang River in Northwest Yunnan Province

Science.gov (United States)

Wang, Jin-liang; Yang, Yue-yuan; Huang, You-ju; Fu, Lei; Rao, Qing

2008-10-01

Land Use/Land Cover Change (LUCC) is the core components of global change researches. It is significant for understanding regional ecological environment and LUCC mechanism of large scale to develop the study of LUCC of regional level. Nujiang River is the upper reaches of a big river in the South Asia--Salween River. Nujiang River is a typical mountainous river which is 3200 kilometer long and its basin area is 32.5 × 105 square kilometer. It locates in the core of "Three Parallel Rivers" World Natural Heritage. It is one of international biodiversity conservation center of the world, the ecological fragile zone and key ecological construction area, as well as a remote undeveloped area with high diversity ethnic. With the rapidly development of society and economy, the land use and land cover changed in a great degree. The function of ecosystem has being degraded in some areas which will not only impact on the ecological construction of local area, but also on the ecological safety of lower reaches -- Salween River. Therefore it is necessary to carry out the research of LUCC of Nujiang River. Based on the theory and methods of geo-information Tupu, the "Spatial Pattern" and "Change Process" of land use of middle reach in Nujiang River from 1974 to 2004 had been studied in quantification and integration, so as to provide a case study in local area and mesoscale in time. Supported by the remote sensing and GIS technology, LUCC Tupu of 1974-2004 had been built and the characteristics of LUCC have been analyzed quantificationally. The results showed that the built-up land (Included in this category are cities, towns, villages, strip developments along highways, transportation, power, and communications facilities, and areas such as those occupied by mills, shopping centers, industrial and commercial complexes, and institutions that may, in some instances, be isolated from urban areas), agriculture land, shrubbery land, meadow & grassland, difficultly/unused land

75 FR 41838 - Basic Energy Sciences Advisory Committee

Science.gov (United States)

2010-07-19

... Basic Energy Sciences Computational Materials Science and Chemistry for Innovation Workshop Final Report... DEPARTMENT OF ENERGY Basic Energy Sciences Advisory Committee AGENCY: Department of Energy, Office of Science. ACTION: Notice of Open Meeting. SUMMARY: This notice announces a meeting of the Basic...

Improving open access to the results of USGS research (Invited)

Science.gov (United States)

Bristol, S.

2013-12-01

Since its establishment under the Organic Act of March 3, 1879, the U.S. Geological Survey (USGS) has been committed to classifying and characterizing 'the geological structure, mineral resources, and products of the national domain.' Over time, the pursuit of this mission and understanding the products of the national domain has involved a broad scientific pursuit to understand complex Earth system processes and includes topographic, geologic, biogeographic, and other types of mapping; chemical, physical, hydrological, and biological research; and the application of computer and data science. As science and technology have evolved, classification and characterization of the Nation's natural resources has come to be embodied in digital data of various structure and form. Fundamentally, scientific publications and data produced through research and monitoring form the core of the USGS mission. They are an organizational and national treasure held and provided in trust for the American people and for the global scientific community. The recent memo from the Office of Science and Technology Policy (OSTP) on 'Increasing Access to the Results of Federally Funded Scientific Research' is part of an overall initiative toward open digital government that dovetails well with the USGS mission. The objectives outlined in the memo correspond directly to goals and objectives of the 2007 USGS Science Strategy ('Facing Tomorrow's Challenges--U.S. Geological Survey Science in the Decade 2007-2017') and the recently released Science Strategy Plans across all USGS Mission Areas. The USGS response to the OSTP memo involves reinforcing aspects of the USGS commitment to open and free access to scholarly publications and data along with improvements to some of the underlying technological systems that facilitate search and discovery. These actions also align with the USGS response to the Executive Order on May 9, 2013, entitled 'Making Open and Machine Readable the New Default for

Badges to Acknowledge Open Practices: A Simple, Low-Cost, Effective Method for Increasing Transparency.

Directory of Open Access Journals (Sweden)

Mallory C Kidwell

2016-05-01

Full Text Available Beginning January 2014, Psychological Science gave authors the opportunity to signal open data and materials if they qualified for badges that accompanied published articles. Before badges, less than 3% of Psychological Science articles reported open data. After badges, 23% reported open data, with an accelerating trend; 39% reported open data in the first half of 2015, an increase of more than an order of magnitude from baseline. There was no change over time in the low rates of data sharing among comparison journals. Moreover, reporting openness does not guarantee openness. When badges were earned, reportedly available data were more likely to be actually available, correct, usable, and complete than when badges were not earned. Open materials also increased to a weaker degree, and there was more variability among comparison journals. Badges are simple, effective signals to promote open practices and improve preservation of data and materials by using independent repositories.

'Open SESAME' for science in the Middle-East

CERN Multimedia

2003-01-01

A memorandum of understanding has just been signed between CERN, SESAME and Jordan. SESAME, the international centre for Synchrotron light for Experimental Science and Applications in the Middle East, is currently being built in Jordan. Its President of Council is no other than CERN's former Director-General, Herwig Schopper.

Starting a Conversation about Open Data in Mathematics Education Research

Science.gov (United States)

Logan, Tracy

2015-01-01

This position paper discusses the role of open access research data within mathematics education, a relatively new initiative across the wider research community. International and national policy documents are explored and examples from both the scientific and social science paradigms of mathematical sciences and mathematics education…

Egyptian Journal of Biomedical Sciences

African Journals Online (AJOL)

The Egyptian Journal of Biomedical Sciences publishes in all aspects of biomedical research sciences. Both basic and clinical research papers are welcomed. Vol 23 (2007). DOWNLOAD FULL TEXT Open Access DOWNLOAD FULL TEXT Subscription or Fee Access. Table of Contents. Articles. Phytochemical And ...

Knowing Patients: Turning Patient Knowledge into Science

NARCIS (Netherlands)

Pols, Jeannette

2014-01-01

Science and technology studies concerned with the study of lay influence on the sciences usually analyze either the political or the normative epistemological consequences of lay interference. Here I frame the relation between patients, knowledge, and the sciences by opening up the question: How can

„Austrian Transition to Open Access“ 2017–2020

Directory of Open Access Journals (Sweden)

Bauer, Bruno

2017-12-01

Full Text Available In December the higher education structural funds project (Hochschulraumstrukturmittelprojekt “Austrian Transition to Open Access (AT2OA“ was authorised by the Austrian Federal Ministry of Science, Research and Economy. The 21 public universities cooperate on this project running from 2017 to 2020 in order to promote open access through concerted measures. Constitutive on OANA’s “suggestions for the implementation of Open Access in Austria” published in 2015 four subprojects have been developed. These subprojects’ main focuses are drafting an expert’s report about the financial impact of a total adjustment to open access on a national and institutional basis, the extension of existing consortium licences with an open access component, establishment of an open access publishing fund as well as the promotion of open access monographs and suitable open access infrastructures.

When data sharing gets close to 100%: what human paleogenetics can teach the open science movement.

Science.gov (United States)

Anagnostou, Paolo; Capocasa, Marco; Milia, Nicola; Sanna, Emanuele; Battaggia, Cinzia; Luzi, Daniela; Destro Bisol, Giovanni

2015-01-01

This study analyzes data sharing regarding mitochondrial, Y chromosomal and autosomal polymorphisms in a total of 162 papers on ancient human DNA published between 1988 and 2013. The estimated sharing rate was not far from totality (97.6% ± 2.1%) and substantially higher than observed in other fields of genetic research (evolutionary, medical and forensic genetics). Both a questionnaire-based survey and the examination of Journals' editorial policies suggest that this high sharing rate cannot be simply explained by the need to comply with stakeholders requests. Most data were made available through body text, but the use of primary databases increased in coincidence with the introduction of complete mitochondrial and next-generation sequencing methods. Our study highlights three important aspects. First, our results imply that researchers' awareness of the importance of openness and transparency for scientific progress may complement stakeholders' policies in achieving very high sharing rates. Second, widespread data sharing does not necessarily coincide with a prevalent use of practices which maximize data findability, accessibility, useability and preservation. A detailed look at the different ways in which data are released can be very useful to detect failures to adopt the best sharing modalities and understand how to correct them. Third and finally, the case of human paleogenetics tells us that a widespread awareness of the importance of Open Science may be important to build reliable scientific practices even in the presence of complex experimental challenges.

Mixed Messages on Climate Science

Science.gov (United States)

Grifo, F.; Gutman, B. L.; Veysey, D.; El Gamal, A.

2011-12-01

While the private sector has a strong interest in climate science, and much at stake as the world comes to terms with the impacts of climate change, their legacy of climate denial has left the public confused. A few companies openly reject the basic science that ties emissions of greenhouse gases from human activities to warming temperatures and other consequences. Many companies play into the confusion by boasting of their green strategies while lobbying against climate bills. Still others joined pro-climate coalitions while donating heavily to politicians who openly reject the science of climate change. Many companies stand to see their business greatly affected by regulations to control greenhouse gas emissions or directly by changing weather patterns, rising sea levels, and varying water availability. Public statements, political activity, and corporate affiliations reveal inconsistent corporate postures. Congress, individuals, and the private sector can all play critical roles in holding corporate America to a higher standard bringing more clarity to science based climate policy discussions.

75 FR 55617 - National Science Board; Sunshine Act Meetings Notice

Science.gov (United States)

2010-09-13

... Dakota Science and Engineering Research. Introduction: Dr. Jack Warner, Executive Director, SD Board of... Member. Plenary Open Open Session: 8 a.m.-11:45 a.m. Jacket Legacy Room. 8 a.m. Chairman's Introduction... of Deep Underground Science and Engineering Laboratory (DUSEL) on South Dakota Graduate Education in...

78 FR 45992 - National Science and Technology Council; Notice of Meeting: Open Meeting of the National Science...

Science.gov (United States)

2013-07-30

..., Engineering, and Technology Subcommittee National Nanotechnology Coordination Office ACTION: Notice of public meeting. SUMMARY: The National Nanotechnology Coordination Office (NNCO), on behalf of the Nanoscale Science, Engineering, and Technology (NSET) Subcommittee of the Committee on Technology, National Science...

The science commons in health research: structure, function, and value.

Science.gov (United States)

Cook-Deegan, Robert

The "science commons," knowledge that is widely accessible at low or no cost, is a uniquely important input to scientific advance and cumulative technological innovation. It is primarily, although not exclusively, funded by government and nonprofit sources. Much of it is produced at academic research centers, although some academic science is proprietary and some privately funded R&D enters the science commons. Science in general aspires to Mertonian norms of openness, universality, objectivity, and critical inquiry. The science commons diverges from proprietary science primarily in being open and being very broadly available. These features make the science commons particularly valuable for advancing knowledge, for training innovators who will ultimately work in both public and private sectors, and in providing a common stock of knowledge upon which all players-both public and private-can draw readily. Open science plays two important roles that proprietary R&D cannot: it enables practical benefits even in the absence of profitable markets for goods and services, and its lays a shared foundation for subsequent private R&D. The history of genomics in the period 1992-2004, covering two periods when genomic startup firms attracted significant private R&D investment, illustrates these features of how a science commons contributes value. Commercial interest in genomics was intense during this period. Fierce competition between private sector and public sector genomics programs was highly visible. Seemingly anomalous behavior, such as private firms funding "open science," can be explained by unusual business dynamics between established firms wanting to preserve a robust science commons to prevent startup firms from limiting established firms' freedom to operate. Deliberate policies to create and protect a large science commons were pursued by nonprofit and government funders of genomics research, such as the Wellcome Trust and National Institutes of Health. These

Science popularization and the Indian constitution - Correspondence

Digital Repository Service at National Institute of Oceanography (India)

Varkey, M.J.

mation System for Science and Techno logy (NISSAT), Central Health Education Bureau, Centre for Enviro n - ment Education, National Institute of Science Communication (NISCOM) and Science magazines like Science Reporter, Down to Earth, Resonance... the learning of science to their immediate social and physical environment. Schools, colleges and NGOs also co n - tribute considerably to popularization of science. CSIR laboratories are e x - pected to orga nize open days for the general public during...

Informal science education at Science City

Science.gov (United States)

French, April Nicole

The presentation of chemistry within informal learning environments, specifically science museums and science centers is very sparse. This work examines learning in Kansas City's Science City's Astronaut Training Center in order to identify specific behaviors associated with visitors' perception of learning and their attitudes toward space and science to develop an effective chemistry exhibit. Grounded in social-constructivism and the Contextual Model of Learning, this work approaches learning in informal environments as resulting from social interactions constructed over time from interaction between visitors. Visitors to the Astronaut Training Center were surveyed both during their visit and a year after the visit to establish their perceptions of behavior within the exhibit and attitudes toward space and science. Observations of visitor behavior and a survey of the Science City staff were used to corroborate visitor responses. Eighty-six percent of visitors to Science City indicated they had learned from their experiences in the Astronaut Training Center. No correlation was found between this perception of learning and visitor's interactions with exhibit stations. Visitor attitudes were generally positive toward learning in informal settings and space science as it was presented in the exhibit. Visitors also felt positively toward using video game technology as learning tools. This opens opportunities to developing chemistry exhibits using video technology to lessen the waste stream produced by a full scale chemistry exhibit.

ITK: Enabling Reproducible Research and Open Science

Directory of Open Access Journals (Sweden)

Matthew Michael McCormick

2014-02-01

Full Text Available Reproducibility verification is essential to the practice of the scientific method. Researchers report their findings, which are strengthened as other independent groups in the scientific community share similar outcomes. In the many scientific fields where software has become a fundamental tool for capturing and analyzing data, this requirement of reproducibility implies that reliable and comprehensive software platforms and tools should be made available to the scientific community. The tools will empower them and the public to verify, through practice, the reproducibility of observations that are reported in the scientific literature.Medical image analysis is one of the fields in which the use of computational resources, both software and hardware, are an essential platform for performing experimental work. In this arena, the introduction of the Insight Toolkit (ITK in 1999 has transformed the field and facilitates its progress by accelerating the rate at which algorithmic implementations are developed, tested, disseminated and improved. By building on the efficiency and quality of open source methodologies, ITK has provided the medical image community with an effective platform on which to build a daily workflow that incorporates the true scientific practices of reproducibility verification.This article describes the multiple tools, methodologies, and practices that the ITK community has adopted, refined, and followed during the past decade, in order to become one of the research communities with the most modern reproducibility verification infrastructure. For example, 207 contributors have created over 2400 unit tests that provide over 84% code line test coverage. The Insight Journal, an open publication journal associated with the toolkit, has seen over 360,000 publication downloads. The median normalized closeness centrality, a measure of knowledge flow, resulting from the distributed peer code review system was high, 0.46.

African Health Sciences

African Journals Online (AJOL)

African Health Sciences is an open access, free online, internationally ... Ebola virus disease: assessment of knowledge, attitude and practice of nursing ... and immune system modulation by aerobic versus resisted exercise training for elderly ...

75 FR 69920 - (NOAA) Science Advisory Board (SAB)

Science.gov (United States)

2010-11-16

... DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration (NOAA) Science Advisory... Administration (NOAA), Department of Commerce (DOC). ACTION: Notice of open meeting. SUMMARY: The Science... Administration (NOAA) science programs are of the highest quality and provide optimal support to resource...

78 FR 16254 - (NOAA) Science Advisory Board (SAB)

Science.gov (United States)

2013-03-14

... DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration (NOAA) Science Advisory... Administration (NOAA), Department of Commerce (DOC). ACTION: Notice of open meeting. SUMMARY: The Science... Administration (NOAA) science programs are of the highest quality and provide optimal support to resource...

Open Business Models (Latin America) - Phase I | IDRC ...

International Development Research Centre (IDRC) Digital Library (Canada)

They will endeavor to demonstrate the innovative character and economic superiority of ... Open business models (Latin America) : final technical report, Mar. ... Organization for Women in Science for the Developing World (OWSD), IDRC is ...

Community science, philosophy of science, and the practice of research.

Science.gov (United States)

Tebes, Jacob Kraemer

2005-06-01

Embedded in community science are implicit theories on the nature of reality (ontology), the justification of knowledge claims (epistemology), and how knowledge is constructed (methodology). These implicit theories influence the conceptualization and practice of research, and open up or constrain its possibilities. The purpose of this paper is to make some of these theories explicit, trace their intellectual history, and propose a shift in the way research in the social and behavioral sciences, and community science in particular, is conceptualized and practiced. After describing the influence and decline of logical empiricism, the underlying philosophical framework for science for the past century, I summarize contemporary views in the philosophy of science that are alternatives to logical empiricism. These include contextualism, normative naturalism, and scientific realism, and propose that a modified version of contextualism, known as perspectivism, affords the philosophical framework for an emerging community science. I then discuss the implications of perspectivism for community science in the form of four propositions to guide the practice of research.

Open evaluation (OE: A vision for entirely transparent post-publication peer review and rating for science

Directory of Open Access Journals (Sweden)

Nikolaus eKriegeskorte

2012-10-01

Full Text Available The two major functions of a scientific publishing system are to provide access to and evaluation of scientific papers. While open access (OA is becoming a reality, open evaluation (OE, the other side of coin, has received less attention. Evaluation steers the attention of the scientific community and thus the very course of science. It also influences the use of scientific findings in public policy. The current system of scientific publishing provides only journal prestige as an indication of the quality of new papers and relies on a non-transparent and noisy pre-publication peer review process, which delays publication by many months on average. Here I propose an OE system, in which papers are evaluated post-publication in an ongoing fashion by means of open peer review and rating. Through signed ratings and reviews, scientists steer the attention of their field and build their reputation. Reviewers are motivated to be objective, because low-quality or self-serving signed evaluations will negatively impact their reputation. A core feature of this proposal is a division of powers between the accumulation of evaluative evidence and the analysis of this evidence by paper evaluation functions (PEFs. PEFs can be freely defined by individuals or groups (e.g. scientific societies and provide a plurality of perspectives on the scientific literature. Simple PEFs will use averages of ratings, weighting reviewers (e.g. by H-factor and rating scales (e.g. by relevance to a decision process in different ways. Complex PEFs will use advanced statistical techniques to infer the quality of a paper. Papers with initially promising ratings will be more deeply evaluated. The continual refinement of PEFs in response to attempts by individuals to influence evaluations in their own favor will make the system ungameable. OA and OE together have the power to revolutionize scientific publishing and usher in a new culture of transparency, constructive criticism, and

The ATLAS Open Data project

CERN Document Server

Doglioni, Caterina; The ATLAS collaboration; Sanchez Pineda, Arturo Rodolfo

2018-01-01

The ATLAS Open Data project is a collection of high-level LHC collision data and tools to be used for education, training, outreach and citizen science. These resources are meant to be platform-independent, and are available on the web and on digital supports, such as USB drives. The project includes a Community hub where users can interact and actively participate in discussions.

78 FR 15937 - Fusion Energy Sciences Advisory Committee

Science.gov (United States)

2013-03-13

... DEPARTMENT OF ENERGY Fusion Energy Sciences Advisory Committee AGENCY: Department of Energy, Office of Science. ACTION: Notice of open meeting. SUMMARY: This notice announces a meeting of the Fusion Energy Sciences Advisory Committee. The Federal Advisory Committee Act requires that public notice of...

Radioactive emanations in fumarole gases of a series of volcanoes in Kamchatka

International Nuclear Information System (INIS)

Adamchuk, Yu.V.; Firstov, P.P.

1986-01-01

The results of measurements of volume activity of emanations in fumarole gases of a series of acting volcanoes in Kamchatka during 1980-1983 are presented. The value of radon concentration in Avachinski volcano fumaroles equal ∼ 2 emanes did not change substantially as compared with the data for 1966. The highest activity (11.5±0.4 emanes) is registered in the Bezymyannyj volcano fumaroles. The emanation site survey of fumarole fields of the second cone of the Great fractured Tolbachinski eruption (GFTE) revealed the narrowly localized zone of radioactive emanation emissions. The radon emission in the above zone in 1981 constitutes (2.3 ± 0.4)x10 -6 Ci/s. Using this estimation, time (34-42 days) and average rate (2.5-3.0 m/h) of depth gases hoisting from magmatic focus are calculated as well as filtration rock characteristics in the narrowly localized near-mouth zone of the second cone of GCTE North outburst in the post eruptive period: permeability coefficient (0.1-4.3 darci), porosity (3-15 %) and mean value of cracks and pores opening (0.6-2.0)x10 -3 cm). The found characteristic values proved to be compared with parameters of crushing zone near epicenters of underground nuclear explosions

Round table: moderated by Marco Bersanelli and François Bouchet - What next? science objectives and required observations: Objective: Open discussion of what are the strengths and weaknesses of possible future experiments, complementarity, what is our target science for the M5 proposal and what is the best strategy to get it

CERN Multimedia

CERN. Geneva

2016-01-01

Round table: moderated by Marco Bersanelli and François Bouchet - What next? science objectives and required observations: Objective: Open discussion of what are the strengths and weaknesses of possible future experiments, complementarity, what is our target science for the M5 proposal and what is the best strategy to get it

International production on science oriented towards data: analysis of the terms data science and e-science in scopus and the web of science

Directory of Open Access Journals (Sweden)

Leilah Santiago Bufrem

2016-08-01

Full Text Available Introduction: current configuration in the dynamics of production and scientific communication reveals the role of Science Oriented Towards Data, a comprehensive conception represented, mainly, by terms such as "e-Science" and "Data Science". Objective: To present the global scientific production on Science Oriented Towards Data by using the terms "e-Science" and "Data Science" in Scopus and the Web of Science during 2006-2016. Methodology: The study is divided into five phases: a search for information in Scopus and the Web of Science data bases; b obtaining bibliometric records; c complementing keywords; d data correction and crossing; e analytical data representation. Results: The most important terms within the analyzed scientific production were Distributed computer systems (2006, Grid computing (2007-2013 and Big data (2014- 2016. In the area of Library and Information Science, the emphasis was on Digital Library and Open Access issues, highlighting the importance of the field for the discussions on the devices providing access to scientific information in digital media. Conclusions: Under a diachronic look, it was found a visible shift of focus, from issues approaching data exchange operations to an analytical perspective for finding patterns in large data volumes

Open mic: Introduction to the CERN Study Group

CERN Multimedia

CERN. Geneva

2016-01-01

Mozilla Study Groups are knowledge- and skill-sharing meet-ups for people to get help with their research or work on open-science projects. A CERN chapter was launched recently and you are invited to participate!

Data Intensive Science

Directory of Open Access Journals (Sweden)

Nicolas Schmelling

2017-02-01

Full Text Available A proposal to create a full-semester zero-entry level course about the responsible handling of research data and the associated analyses, storage, and sharing. The syllabus will comprise open science workflows, the creation of data management plans, as well as the addressing issues about reproducibility and data sharing in science. The course and all its materials will be licensed under CC-BY or if possible under CC-0.

Communicating Your Science

Science.gov (United States)

Young, C. A.

2016-12-01

Effective science communication can open doors, accelerate your career and even make you a better scientist. Part of being an effective and productive scientist means being an effective science communicator. The scientist must communicate their work in talks, posters, peer-reviewed papers, internal reports, proposals as well as to the broader public (including law makers). Despite the importance of communication, it has traditionally not been part of our core training as scientists. Today's science students are beginning to have more opportunities to formally develop their science communication skills. Fortunately, new and even more established scientists have a range of tools and resources at their disposal. In this presentation, we will share some of these resources, share our own experiences utilizing them, and provide some practical tools to improve your own science communication skills.

75 FR 6369 - Basic Energy Sciences Advisory Committee

Science.gov (United States)

2010-02-09

... DEPARTMENT OF ENERGY Basic Energy Sciences Advisory Committee AGENCY: Department of Energy, Office of Science. ACTION: Notice of Open Meeting. SUMMARY: This notice announces a meeting of the Basic Energy Sciences Advisory Committee (BESAC). Federal Advisory Committee Act (Pub. L. 92- 463, 86 Stat. 770...

75 FR 8685 - Fusion Energy Sciences Advisory Committee

Science.gov (United States)

2010-02-25

... DEPARTMENT OF ENERGY Fusion Energy Sciences Advisory Committee AGENCY: Department of Energy, Office of Science. ACTION: Notice of open meeting. SUMMARY: This notice announces a meeting of the Fusion Energy Sciences Advisory Committee. The Federal Advisory Committee Act (Pub. L. 92-463, 86 Stat. 770...

76 FR 41234 - Basic Energy Sciences Advisory Committee

Science.gov (United States)

2011-07-13

... DEPARTMENT OF ENERGY Basic Energy Sciences Advisory Committee AGENCY: Department of Energy, Office of Science. ACTION: Notice of open meeting. SUMMARY: This notice announces a meeting of the Basic Energy Sciences Advisory Committee (BESAC). Federal Advisory Committee Act (Pub. L. 92- 463, 86 Stat. 770...

78 FR 38696 - Basic Energy Sciences Advisory Committee

Science.gov (United States)

2013-06-27

... DEPARTMENT OF ENERGY Basic Energy Sciences Advisory Committee AGENCY: Department of Energy, Office of Science. ACTION: Notice of Open Meeting. SUMMARY: This notice announces a meeting of the Basic Energy Sciences Advisory Committee (BESAC). The Federal Advisory Committee Act (Pub. L. 92-463, 86 Stat...

77 FR 41395 - Basic Energy Sciences Advisory Committee

Science.gov (United States)

2012-07-13

... DEPARTMENT OF ENERGY Basic Energy Sciences Advisory Committee AGENCY: Department of Energy, Office of Science. ACTION: Notice of open meeting. SUMMARY: This notice announces a meeting of the Basic Energy Sciences Advisory Committee (BESAC). Federal Advisory Committee Act (Pub. L. 92- 463, 86 Stat. 770...

75 FR 13265 - National Board for Education Sciences

Science.gov (United States)

2010-03-19

... DEPARTMENT OF EDUCATION National Board for Education Sciences AGENCY: Institute of Education Sciences, Department of Education. ACTION: Notice of an open meeting. SUMMARY: This notice sets forth the schedule and proposed agenda of an upcoming meeting of the National Board for Education Sciences. The...

75 FR 53280 - National Board for Education Sciences

Science.gov (United States)

2010-08-31

... DEPARTMENT OF EDUCATION National Board for Education Sciences AGENCY: Department of Education, Institute of Education Sciences. ACTION: Notice of an open meeting. SUMMARY: This notice sets forth the schedule and proposed agenda of an upcoming meeting of the National Board for Education Sciences. The...

76 FR 8358 - Basic Energy Sciences Advisory Committee

Science.gov (United States)

2011-02-14

... DEPARTMENT OF ENERGY Basic Energy Sciences Advisory Committee AGENCY: Department of Energy, Office of Science. ACTION: Notice of open meeting. SUMMARY: This notice announces a meeting of the Basic Energy Sciences Advisory Committee (BESAC). Federal Advisory Committee Act (Pub. L. 92- 463, 86 Stat. 770...

76 FR 40714 - Fusion Energy Sciences Advisory Committee

Science.gov (United States)

2011-07-11

... DEPARTMENT OF ENERGY Fusion Energy Sciences Advisory Committee AGENCY: Department of Energy, Office of Science. ACTION: Notice of open meeting. SUMMARY: This notice announces a meeting of the Fusion Energy Sciences Advisory Committee. The Federal Advisory Committee Act (Pub. L. 92-463, 86 Stat. 770...

ATLAS Open Data project

CERN Document Server

The ATLAS collaboration

2018-01-01

The current ATLAS model of Open Access to recorded and simulated data offers the opportunity to access datasets with a focus on education, training and outreach. This mandate supports the creation of platforms, projects, software, and educational products used all over the planet. We describe the overall status of ATLAS Open Data (http://opendata.atlas.cern) activities, from core ATLAS activities and releases to individual and group efforts, as well as educational programs, and final web or software-based (and hard-copy) products that have been produced or are under development. The relatively large number and heterogeneous use cases currently documented is driving an upcoming release of more data and resources for the ATLAS Community and anyone interested to explore the world of experimental particle physics and the computer sciences through data analysis.

eScience and archiving for space science

Directory of Open Access Journals (Sweden)

Timothy E Eastman

2006-01-01

Full Text Available A confluence of technologies is leading towards revolutionary new interactions between robust data sets, state-of-the-art models and simulations, high-data-rate sensors, and high-performance computing. Data and data systems are central to these new developments in various forms of eScience or grid systems. Space science missions are developing multi-spacecraft, distributed, communications- and computation-intensive, adaptive mission architectures that will further add to the data avalanche. Fortunately, Knowledge Discovery in Database (KDD tools are rapidly expanding to meet the need for more efficient information extraction and knowledge generation in this data-intensive environment. Concurrently, scientific data management is being augmented by content-based metadata and semantic services. Archiving, eScience and KDD all require a solid foundation in interoperability and systems architecture. These concepts are illustrated through examples of space science data preservation, archiving, and access, including application of the ISO-standard Open Archive Information System (OAIS architecture.

Expanding Science Knowledge: Enabled by Nuclear Power

Science.gov (United States)

Clark, Karla B.

2011-01-01

The availability of Radioisotope Power Sources (RPSs) power opens up new and exciting mission concepts (1) New trajectories available (2) Power for long term science and operations Astonishing science value associated with these previously non-viable missions

Translating Biotechnology to Knowledge-Based Innovation, Peace, and Development? Deploy a Science Peace Corps—An Open Letter to World Leaders

Science.gov (United States)

Abou-Zeid, Alaa H.; Ağırbaşlı, Mehmet; Akintola, Simisola O.; Aynacıoğlu, Şükrü; Bayram, Mustafa; Bragazzi, Nicola Luigi; Dandara, Collet; Dereli, Türkay; Dove, Edward S.; Elbeyli, Levent; Endrenyi, Laszlo; Erciyas, Kamile; Faris, Jack; Ferguson, Lynnette R.; Göğüş, Fahrettin; Güngör, Kıvanç; Gürsoy, Mervi; Gürsoy, Ulvi K.; Karaömerlioğlu, M. Asım; Kickbusch, Ilona; Kılıç, Türker; Kılınç, Metin; Kocagöz, Tanıl; Lin, Biaoyang; LLerena, Adrián; Manolopoulos, Vangelis G.; Nair, Bipin; Özkan, Bülent; Pang, Tikki; Şardaş, Semra; Srivastava, Sanjeeva; Toraman, Cengiz; Üstün, Kemal; Warnich, Louise; Wonkam, Ambroise; Yakıcıer, Mustafa Cengiz; Yaşar, Ümit

2014-01-01

, “nearly all men can stand adversity, but if you want to test a man's character, give him power.” We therefore petition President Barack Obama, other world leaders, and international development agencies in positions of power around the globe, to consider deploying a Science Peace Corps to cultivate the essential (and presently missing) ties among life sciences, foreign policy, development, and peace agendas. A Science Peace Corps requires support by a credible and independent intergovernmental organization or development agency for funding, and arbitration in the course of volunteer work when the global versus local (glocal) value-based priorities and human rights intersect in synergy or conflict. In all, Science Peace Corps is an invitation to a new pathway for competence in 21st century science that is locally productive and globally competitive. It can open up scientific institutions to broader considerations and broader inputs, and thus cultivate vital translational science in a world sorely in need of solidarity and sustainable responses to the challenges of 21st century science and society. “Let me say in conclusion, this University is not maintained by its alumni, or by the state, merely to help its graduates have an economic advantage in the life struggle. There is certainly a greater purpose, and I'm sure you recognize it. Therefore, I do not apologize for asking for your support in this campaign.” President John F. Kennedy On the occasion of the Peace Corps Campaign, On the steps of the University of Michigan Union PMID:24955641

Science on stage

CERN Multimedia

2005-01-01

During the opening ceremony, the audience was dazzled by a juggling show involving dramatic light effects. They also took away with them a teacher's sheet explaining some of the scientific concepts involved in juggling. Science teachers can sometimes be quite humorous when it comes to explaining serious matters, as those who took part in the 'Science on Stage' festival held at CERN from 21 to 25 November were able to see for themselves. The 500 or so participants from 27 different countries, mostly science teachers but also some university lecturers, science outreach specialists and students, had the opportunity to share their experience of the teaching of science. They also attended presentations and shows, took part in workshops and visited a fair with stands offering ideas on how to make school science lessons more appealing. The festival, organised by the EIROforum (a partnership between CERN, EFDA, ESA, ESO, EMBL, ESRF and ILL), marked the end of two years of projects for the promotion of science in vir...

Právo na informace formou Open Data a Open Access ve světle českého práva a práva EU

Czech Academy of Sciences Publication Activity Database

Kolman, Jiří

2013-01-01

Roč. 4, č. 8 (2013), s. 27-32 ISSN 1804-5383 R&D Projects: GA MŠk(CZ) ED1.1.00/02.0073 Institutional support: RVO:67179843 Keywords : open data * open acces * freedom of information * public aid * trade secretes * research and development data Subject RIV: AG - Legal Sciences

iBiology: communicating the process of science.

Science.gov (United States)

Goodwin, Sarah S

2014-08-01

The Internet hosts an abundance of science video resources aimed at communicating scientific knowledge, including webinars, massive open online courses, and TED talks. Although these videos are efficient at disseminating information for diverse types of users, they often do not demonstrate the process of doing science, the excitement of scientific discovery, or how new scientific knowledge is developed. iBiology (www.ibiology.org), a project that creates open-access science videos about biology research and science-related topics, seeks to fill this need by producing videos by science leaders that make their ideas, stories, and experiences available to anyone with an Internet connection. © 2014 Goodwin. This article is distributed by The American Society for Cell Biology under license from the author(s). Two months after publication it is available to the public under an Attribution–Noncommercial–Share Alike 3.0 Unported Creative Commons License (http://creativecommons.org/licenses/by-nc-sa/3.0).

Open Source Dataturbine (OSDT) Android Sensorpod in Environmental Observing Systems

Science.gov (United States)

Fountain, T. R.; Shin, P.; Tilak, S.; Trinh, T.; Smith, J.; Kram, S.

2014-12-01

The OSDT Android SensorPod is a custom-designed mobile computing platform for assembling wireless sensor networks for environmental monitoring applications. Funded by an award from the Gordon and Betty Moore Foundation, the OSDT SensorPod represents a significant technological advance in the application of mobile and cloud computing technologies to near-real-time applications in environmental science, natural resources management, and disaster response and recovery. It provides a modular architecture based on open standards and open-source software that allows system developers to align their projects with industry best practices and technology trends, while avoiding commercial vendor lock-in to expensive proprietary software and hardware systems. The integration of mobile and cloud-computing infrastructure represents a disruptive technology in the field of environmental science, since basic assumptions about technology requirements are now open to revision, e.g., the roles of special purpose data loggers and dedicated site infrastructure. The OSDT Android SensorPod was designed with these considerations in mind, and the resulting system exhibits the following characteristics - it is flexible, efficient and robust. The system was developed and tested in the three science applications: 1) a fresh water limnology deployment in Wisconsin, 2) a near coastal marine science deployment at the UCSD Scripps Pier, and 3) a terrestrial ecological deployment in the mountains of Taiwan. As part of a public education and outreach effort, a Facebook page with daily ocean pH measurements from the UCSD Scripps pier was developed. Wireless sensor networks and the virtualization of data and network services is the future of environmental science infrastructure. The OSDT Android SensorPod was designed and developed to harness these new technology developments for environmental monitoring applications.

Open Business Models: New Compensation Mechanisms for ...

International Development Research Centre (IDRC) Digital Library (Canada)

Open Business Models: New Compensation Mechanisms for Creativity and Inclusion ... This research aims to explore important new business models in the networked society ... Linking research to urban planning at the ICLEI World Congress 2018 ... In partnership with UNESCO's Organization for Women in Science for the ...

Protecting the pipeline of science: openness, scientific methods and the lessons from ticagrelor and the PLATO trial.

Science.gov (United States)

Coats, Andrew J Stewart; Nijjer, Sukhjinder S; Francis, Darrel P

2014-10-20

Ticagrelor, a potent antiplatelet, has been shown to be beneficial in patients with acute coronary syndromes in a randomised controlled trial published in a highly ranked peer reviewed journal. Accordingly it has entered guidelines and has been approved for clinical use by authorities. However, there remains a controversy regarding aspects of the PLATO trial, which are not immediately apparent from the peer-reviewed publications. A number of publications have sought to highlight potential discrepancies, using data available in publicly published documents from the US Food and Drug Administration (FDA) leading to disagreement regarding the value of open science and data sharing. We reflect upon potential sources of bias present in even rigorously performed randomised controlled trials, on whether peer review can establish the presence of bias and the need to constantly challenge and question even accepted data. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

A thirty year look at the nuclear science programs at the American Museum of Science and Energy

International Nuclear Information System (INIS)

Marsee, M.D.; Williams, A.J.

1993-01-01

The American Museum of Science and Energy has been involved in nuclear science education since it opened in 1949. For a period between the mid-1950's and the early 1980's, a series of travelling exhibits and demonstrations provided the nation with programs about basic nuclear science and peaceful applications of atomic energy. The Museum itself continues educating its visitors about nuclear science via audio-visuals, interactive exhibitry and live demonstrations and classes. (author) 1 fig

Open Access to Data - Central Role for Geoinformatics

Science.gov (United States)

Snyder, W. S.

2006-12-01

The open access to scientific information has become a contentious issue. In the United States there are calls to make all published literature available for free within 6 months of publication, the notion being that this will promote better science and policy decisions based on science. Here, I argue that this is the incorrect approach to the issue of open access to scientific information. A fundamental problem raised by the call for open access to government-supported research results is the viability of our not-for-profit professional scientific societies. These societies provide the base level framework for the exchange of scientific ideas, and hence the very core of how we do science and how scientific knowledge is advanced. Why should a scientist subscribe to a journal if they can read the article for free in six months? A large portion of a society's operational costs come from these subscriptions and the sale of specialized books, all of which contain the results of federally-funded research. Without revenue from journal subscriptions and book sales, not only will these publications disappear, but many of societies may as well. Without a broad venue to publish and in which to interact, our science suffers - many subdisciplines may fade or even die - those that don't "sell well." Very popular publications such as "Nature", "Science", "Tectonics", and "Geology" will continue to thrive, but what about the more specialized journals such as "Journal of Paleontology"? They are costly to publish yet fill a very critical niche for our science. Many will still pay for reading the Nature/Science/Tectonics/Geology article, but where do we publish the mainstream science paper? We have to guard against becoming a "Hollywood Science" - where only the glitzy gets published because those are the articles that sell. We must have peer-reviewed, independent publications and viable professional societies, or our science will severely suffer. We can better approach the need for

Audiovisual heritage preservation in Earth and Space Science Informatics: Videos from Free and Open Source Software for Geospatial (FOSS4G) conferences in the TIB|AV-Portal.

Science.gov (United States)

Löwe, Peter; Marín Arraiza, Paloma; Plank, Margret

2016-04-01

The influence of Free and Open Source Software (FOSS) projects on Earth and Space Science Informatics (ESSI) continues to grow, particularly in the emerging context of Data Science or Open Science. The scientific significance and heritage of FOSS projects is only to a limited amount covered by traditional scientific journal articles: Audiovisual conference recordings contain significant information for analysis, reference and citation. In the context of data driven research, this audiovisual content needs to be accessible by effective search capabilities, enabling the content to be searched in depth and retrieved. Thereby, it is ensured that the content producers receive credit for their efforts within the respective communities. For Geoinformatics and ESSI, one distinguished driver is the OSGeo Foundation (OSGeo), founded in 2006 to support and promote the interdisciplinary collaborative development of open geospatial technologies and data. The organisational structure is based on software projects that have successfully passed the OSGeo incubation process, proving their compliance with FOSS licence models. This quality assurance is crucial for the transparent and unhindered application in (Open) Science. The main communication channels within and between the OSGeo-hosted community projects for face to face meetings are conferences on national, regional and global scale. Video recordings have been complementing the scientific proceedings since 2006. During the last decade, the growing body of OSGeo videos has been negatively affected by content loss, obsolescence of video technology and dependence on commercial video portals. Even worse, the distributed storage and lack of metadata do not guarantee concise and efficient access of the content. This limits the retrospective analysis of video content from past conferences. But, it also indicates a need for reliable, standardized, comparable audiovisual repositories for the future, as the number of OSGeo projects

Anatomy of BioJS, an open source community for the life sciences.

Science.gov (United States)

Yachdav, Guy; Goldberg, Tatyana; Wilzbach, Sebastian; Dao, David; Shih, Iris; Choudhary, Saket; Crouch, Steve; Franz, Max; García, Alexander; García, Leyla J; Grüning, Björn A; Inupakutika, Devasena; Sillitoe, Ian; Thanki, Anil S; Vieira, Bruno; Villaveces, José M; Schneider, Maria V; Lewis, Suzanna; Pettifer, Steve; Rost, Burkhard; Corpas, Manuel

2015-07-08

BioJS is an open source software project that develops visualization tools for different types of biological data. Here we report on the factors that influenced the growth of the BioJS user and developer community, and outline our strategy for building on this growth. The lessons we have learned on BioJS may also be relevant to other open source software projects.

Complex land use and cover trajectories in the northern Choco bioregion of Colombia

Science.gov (United States)

Santos, Carolina

The Choco bioregion in Northwestern Colombia is a lowland rain forest and hotspot of biodiversity. Significant land use and cover change (LUCC) is occurring throughout the region driven by global markets, illicit drug production, and civil unrest. The dominant land cover conversion is from primary forest to African Palm plantations, mediated and modified by complex combinations of social and biophysical drivers. This research combined a remote sensing based methodology to monitor LUCC in the region with an analytical approach for evaluating the possible trajectories of LUCC in a complex biological, socio-economical, and political environment. Synoptic LUCC models were developed using textural classification derived from Synthetic Aperture Radar (SAR) images for the period 1995 to 2010. LUCC models along with empirical social and spatial biophysical drivers were used to project historical land use trajectories. DINAMICA EGO a complex systems based spatial analytical framework was adopted as the platform to model land use change. The RADAR backscatter was able to capture areas were forest has been converted to African Oil Palm Plantations. However, an in depth characterization of the LUC dynamics was problematic given the spectral and spatial limitations of the sensor combined with the lack of ground data. The results of the LUC model suggest that under the current socio-political conditions African oil palm plantations will continue to expand toward forested areas into the territories traditionally inhabited by Afro-Colombians and Indigenous populations. Insecure land tenure appears as a main driver of the transformation in close association with the conditions created by the armed conflict, and the drug traffic. The rate of the transformation appears to slow down in the period after 2007. However, according to the model by 2020 most of the area inhabited by ethnic groups will be transform to AOP. This study contributes towards the understanding of land use change

The writhe of open and closed curves

International Nuclear Information System (INIS)

Berger, Mitchell A; Prior, Chris

2006-01-01

Twist and writhe measure basic geometric properties of a ribbon or tube. While these measures have applications in molecular biology, materials science, fluid mechanics and astrophysics, they are under-utilized because they are often considered difficult to compute. In addition, many applications involve curves with endpoints (open curves); but for these curves the definition of writhe can be ambiguous. This paper provides simple expressions for the writhe of closed curves, and provides a new definition of writhe for open curves. The open curve definition is especially appropriate when the curve is anchored at endpoints on a plane or stretches between two parallel planes. This definition can be especially useful for magnetic flux tubes in the solar atmosphere, and for isotropic rods with ends fixed to a plane

OpenAPC. Open-Access-Publikationskosten als Open Data

OpenAIRE

Tullney, Marco

2015-01-01

Präsentationsfolien zum Vortrag „OpenAPC. Open-Access-Publikationskosten als Open Data“ in der Session „Ausgestaltung eines wissenschaftsadäquaten APC-Marktes: Grundsätze, Finanzierungsansätze und Management“ der Open-Access-Tage 2015 in Zürich (https://www.open-access.net/community/open-access-tage/open-access-tage-2015-zuerich/programm/#c1974)

An open future for ecological and evolutionary data?

OpenAIRE

Kenall, Amye; Harold, Simon; Foote, Christopher

2014-01-01

As part of BioMed Central’s open science mission, we are pleased to announce that two of our journals have integrated with the open data repository Dryad. Authors submitting their research to either BMC Ecology or BMC Evolutionary Biology will now have the opportunity to deposit their data directly into the Dryad archive and will receive a permanent, citable link to their dataset. Although this does not affect any of our current data deposition policies at these journals, we hope to encourage...

The LOFAR Magnetism Key Science Project

NARCIS (Netherlands)

Anderson, James; Beck, Rainer; Bell, Michael; de Bruyn, Ger; Chyzy, Krzysztof; Eislöffel, Jochen; Enßlin, Torsten; Fletcher, Andrew; Haverkorn, Marijke; Heald, George; Horneffer, Andreas; Noutsos, Aris; Reich, Wolfgang; Scaife, Anna; the LOFAR collaboration, [No Value

2012-01-01

Measuring radio waves at low frequencies offers a new window to study cosmic magnetism, and LOFAR is the ideal radio telescope to open this window widely. The LOFAR Magnetism Key Science Project (MKSP) draws together expertise from multiple fields of magnetism science and intends to use LOFAR to

The Dutch Open Telescope: History, Status, Prospects

NARCIS (Netherlands)

Rutten, R.J.

1999-01-01

After many years of persistent telescope design and telescope construction, R.H. Hammerschlag has installed his Dutch Open Telescope (DOT) on La Palma. I brie y review its history and design. The future of optical solar physics at Utrecht hinges on a recently-funded three- year DOT science

Land-Use Change and Emerging Infectious Disease on an Island Continent

Directory of Open Access Journals (Sweden)

Rosemary A. McFarlane

2013-06-01

Full Text Available A more rigorous and nuanced understanding of land-use change (LUC as a driver of emerging infectious disease (EID is required. Here we examine post hunter-gatherer LUC as a driver of infectious disease in one biogeographical region with a compressed and documented history—continental Australia. We do this by examining land-use and native vegetation change (LUCC associations with infectious disease emergence identified through a systematic (1973–2010 and historical (1788–1973 review of infectious disease literature of humans and animals. We find that 22% (20 of the systematically reviewed EIDs are associated with LUCC, most frequently where natural landscapes have been removed or replaced with agriculture, plantations, livestock or urban development. Historical clustering of vector-borne, zoonotic and environmental disease emergence also follows major periods of extensive land clearing. These advanced stages of LUCC are accompanied by changes in the distribution and density of hosts and vectors, at varying scales and chronology. This review of infectious disease emergence in one continent provides valuable insight into the association between accelerated global LUC and concurrent accelerated infectious disease emergence.

The Effects of Gender and Type of Inquiry Curriculum on Sixth Grade Students' Science Process Skills and Epistemological Beliefs in Science

Science.gov (United States)

Zaleta, Kristy L.

The purpose of this study was to investigate the impact of gender and type of inquiry curriculum (open or structured) on science process skills and epistemological beliefs in science of sixth grade students. The current study took place in an urban northeastern middle school. The researcher utilized a sample of convenience comprised of 303 sixth grade students taught by four science teachers on separate teams. The study employed mixed methods with a quasi-experimental design, pretest-posttest comparison group with 17 intact classrooms of students. Students' science process skills and epistemological beliefs in science (source, certainty, development, and justification) were measured before and after the intervention, which exposed different groups of students to different types of inquiry (structured or open). Differences between comparison and treatment groups and between male and female students were analyzed after the intervention, on science process skills, using a two-way analysis of covariance (ANCOVA), and, on epistemological beliefs in science, using a two-way multivariate analysis of covariance (MANCOVA). Responses from two focus groups of open inquiry students were cycle coded and examined for themes and patterns. Quantitative measurements indicated that girls scored significantly higher on science process skills than boys, regardless of type of inquiry instruction. Neither gender nor type of inquiry instruction predicted students' epistemological beliefs in science after accounting for students' pretest scores. The dimension Development accounted for 10.6% of the variance in students' science process skills. Qualitative results indicated that students with sophisticated epistemological beliefs expressed engagement with the open-inquiry curriculum. Students in both the sophisticated and naive beliefs groups identified challenges with the curriculum and improvement in learning as major themes. The types of challenges identified differed between the groups

Fast-opening vacuum switches for high-power inductive energy storage

International Nuclear Information System (INIS)

Cooperstein, G.

1988-01-01

The subject of fast-opening vacuum switches for high-power inductive energy storage is emerging as an exciting new area of plasma science research. This opening switch technology, which generally involves the use of plasmas as the switching medium, is key to the development of inductive energy storage techniques for pulsed power which have a number of advantages over conventional capacitive techniques with regard to cost and size. This paper reviews the state of the art in this area with emphasis on applications to inductive storage pulsed power generators. Discussion focuses on fast-opening vacuum switches capable of operating at high power (≥10 12 W). These include plasma erosion opening switches, ion beam opening switches, plasma filled diodes, reflex diodes, plasma flow switches, and other novel vacuum opening switches

The Usage of Recycle Materials for Science Practicum: Is There Any Effect on Science Process Skills?

Science.gov (United States)

Prajoko, Setiyo; Amin, Mohamad; Rohman, Fatchur; Gipayana, Muhana

2017-01-01

This study aimed at determining the effect of recycle materials usage for science practicum on students' basic science process skills of the Open University, Surakarta. Recycle materials are the term used for the obtained materials and equipment from the students' environment by taking back the garbage or secondhand objects into goods or new…

Open Standards, Open Source, and Open Innovation: Harnessing the Benefits of Openness

Science.gov (United States)

Committee for Economic Development, 2006

2006-01-01

Digitization of information and the Internet have profoundly expanded the capacity for openness. This report details the benefits of openness in three areas--open standards, open-source software, and open innovation--and examines the major issues in the debate over whether openness should be encouraged or not. The report explains each of these…

Research opportunities in photochemical sciences

Energy Technology Data Exchange (ETDEWEB)

NONE

1996-07-01

The workshop entitled {open_quotes}Research Opportunities in Photochemical Sciences{close_quotes} was initiated by the U.S. Department of Energy (DOE), Office of Energy Research (ER), Office of Basic Energy Sciences (BES), Division of Chemical Sciences. The National Renewable Energy Laboratory (NREL) in Golden, Colorado was requested by ER to host the workshop. It was held February 5-8, 1996 at the Estes Park Conference Center, Estes Park, CO, and attended by about 115 leading scientists and engineers from the U.S., Japan, and Europe; program managers for the DOE ER and Energy Efficiency and Renewable Energy (EERE) programs also attended. The purpose of the workshop was to bridge the communication gap between the practioneers and supporters of basic research in photochemical science and the practioneers and supporters of applied research and development in technologies related to photochemical science. For the purposes of the workshop the definition of the term {open_quotes}photochemical science{close_quotes} was broadened to include homogeneous photochemistry, heterogeneous photochemistry, photoelectrochemistry, photocatalysis, photobiology (for example, the light-driven processes of biological photosynthesis and proton pumping), artificial photosynthesis, solid state photochemistry, and solar photochemistry. The technologies under development through DOE support that are most closely related to photochemical science, as defined above, are the renewable energy technologies of photovoltaics, biofuels, hydrogen energy, carbon dioxide reduction and utilization, and photocatalysis for environmental cleanup of water and air. Individual papers were processed separately for the United states Department of Energy databases.

An open repository of earthquake-triggered ground-failure inventories

Science.gov (United States)

Schmitt, Robert G.; Tanyas, Hakan; Nowicki Jessee, M. Anna; Zhu, Jing; Biegel, Katherine M.; Allstadt, Kate E.; Jibson, Randall W.; Thompson, Eric M.; van Westen, Cees J.; Sato, Hiroshi P.; Wald, David J.; Godt, Jonathan W.; Gorum, Tolga; Xu, Chong; Rathje, Ellen M.; Knudsen, Keith L.

2017-12-20

Earthquake-triggered ground failure, such as landsliding and liquefaction, can contribute significantly to losses, but our current ability to accurately include them in earthquake-hazard analyses is limited. The development of robust and widely applicable models requires access to numerous inventories of ground failures triggered by earthquakes that span a broad range of terrains, shaking characteristics, and climates. We present an openly accessible, centralized earthquake-triggered groundfailure inventory repository in the form of a ScienceBase Community to provide open access to these data with the goal of accelerating research progress. The ScienceBase Community hosts digital inventories created by both U.S. Geological Survey (USGS) and non-USGS authors. We present the original digital inventory files (when available) as well as an integrated database with uniform attributes. We also summarize the mapping methodology and level of completeness as reported by the original author(s) for each inventory. This document describes the steps taken to collect, process, and compile the inventories and the process for adding additional ground-failure inventories to the ScienceBase Community in the future.

Game based learning for computer science education

NARCIS (Netherlands)

Schmitz, Birgit; Czauderna, André; Klemke, Roland; Specht, Marcus

2011-01-01

Schmitz, B., Czauderna, A., Klemke, R., & Specht, M. (2011). Game based learning for computer science education. In G. van der Veer, P. B. Sloep, & M. van Eekelen (Eds.), Computer Science Education Research Conference (CSERC '11) (pp. 81-86). Heerlen, The Netherlands: Open Universiteit.

Journal of Biosciences | Indian Academy of Sciences

Indian Academy of Sciences (India)

2008-09-19

Sep 19, 2008 ... Author Affiliations. Simona Ginsburg1 Eva Jablonka2. Natural Science Department, The Open University of Israel, POB 808, Raanana, Israel; The Cohn Institute for the History and Philosophy of Science and Ideas, Tel-Aviv University, Tel-Aviv 66978, Israel ...

Learning Earthquake Design and Construction–Why are Open ...

Indian Academy of Sciences (India)

Home; Journals; Resonance – Journal of Science Education; Volume 10; Issue 10. Learning Earthquake Design and Construction – Why are Open-Ground Storey Buildings Vulnerable in Earthquakes? C V R Murty. Classroom Volume 10 Issue 10 October 2005 pp 84-87 ...

Gold or green: the debate on open access policies.

Science.gov (United States)

Abadal, Ernest

2013-09-01

The movement for open access to science seeks to achieve unrestricted and free access to academic publications on the Internet. To this end, two mechanisms have been established: the gold road, in which scientific journals are openly accessible, and the green road, in which publications are self-archived in repositories. The publication of the Finch Report in 2012, advocating exclusively the adoption of the gold road, generated a debate as to whether either of the two options should be prioritized. The recommendations of the Finch Report stirred controversy among academicians specialized in open access issues, who felt that the role played by repositories was not adequately considered and because the green road places the burden of publishing costs basically on authors. The Finch Report's conclusions are compatible with the characteristics of science communication in the UK and they could surely also be applied to the (few) countries with a powerful publishing industry and substantial research funding. In Spain, both the current national legislation and the existing rules at universities largely advocate the green road. This is directly related to the structure of scientific communication in Spain, where many journals have little commercial significance, the system of charging a fee to authors has not been adopted, and there is a good repository infrastructure. As for open access policies, the performance of the scientific communication system in each country should be carefully analyzed to determine the most suitable open access strategy.

The influence of journal submission guidelines on authors' reporting of statistics and use of open research practices.

Science.gov (United States)

Giofrè, David; Cumming, Geoff; Fresc, Luca; Boedker, Ingrid; Tressoldi, Patrizio

2017-01-01

From January 2014, Psychological Science introduced new submission guidelines that encouraged the use of effect sizes, estimation, and meta-analysis (the "new statistics"), required extra detail of methods, and offered badges for use of open science practices. We investigated the use of these practices in empirical articles published by Psychological Science and, for comparison, by the Journal of Experimental Psychology: General, during the period of January 2013 to December 2015. The use of null hypothesis significance testing (NHST) was extremely high at all times and in both journals. In Psychological Science, the use of confidence intervals increased markedly overall, from 28% of articles in 2013 to 70% in 2015, as did the availability of open data (3 to 39%) and open materials (7 to 31%). The other journal showed smaller or much smaller changes. Our findings suggest that journal-specific submission guidelines may encourage desirable changes in authors' practices.

Open Access and repositories beyond green and gold

CERN Document Server

2007-01-01

Access to previous results and their reuse in new research are at the very basis of scientific progress. In the era of e-Science and when the Open Access paradigm is changing scholarly communication, there is an unprecedented need for rapid and effective online access to scientific information. High-Energy Physics (HEP) pioneered innovation in scholarly communication with the invention of the Web, originally a vehicle of scientific information, and with the inception of online preprint repositories, introducing Open Access to preliminary scientific results. With the imminent start-up of the CERN LHC accelerator, one of the flagships of European science, the HEP community urgently needs a new platform for scientific information. A multi-disciplinary collaboration of academies, research laboratories and industrial partners has developed a vision to build such an innovative e-infrastructure: HEPIS (High Energy Physics Information System). HEPIS will integrate present European and American databases and repositor...

Open source hardware solutions for low-cost, do-it-yourself environmental monitoring, citizen science, and STEM education

Science.gov (United States)

Hicks, S. D.; Aufdenkampe, A. K.; Horsburgh, J. S.; Arscott, D. B.; Muenz, T.; Bressler, D. W.

2016-12-01

The explosion in DIY open-source hardware and software has resulted in the development of affordable and accessible technologies, like drones and weather stations, that can greatly assist the general public in monitoring environmental health and its degradation. It is widely recognized that education and support of audiences in pursuit of STEM literacy and the application of emerging technologies is a challenge for the future of citizen science and for preparing high school graduates to be actively engaged in environmental stewardship. It is also clear that detecting environmental change/degradation over time and space will be greatly enhanced with expanded use of networked, remote monitoring technologies by watershed organizations and citizen scientists if data collection and reporting are properly carried out and curated. However, there are few focused efforts to link citizen scientists and school programs with these emerging tools. We have started a multi-year program to develop hardware and teaching materials for training students and citizen scientists about the use of open source hardware in environmental monitoring. Scientists and educators around the world have started building their own dataloggers and devices using a variety of boards based on open source electronics. This new hardware is now providing researchers with an inexpensive alternative to commercial data logging and transmission hardware. We will present a variety of hardware solutions using the Arduino-compatible EnviroDIY Mayfly board (http://envirodiy.org/mayfly) that can be used to build and deploy a rugged environmental monitoring station using a wide variety of sensors and options, giving the users a fully customizable device for making measurements almost anywhere. A database and visualization system is being developed that will allow the users to view and manage the data their devices are collecting. We will also present our plan for developing curricula and leading workshops to various

Girls Save the World through Computer Science

Science.gov (United States)

Murakami, Christine

2011-01-01

It's no secret that fewer and fewer women are entering computer science fields. Attracting high school girls to computer science is only part of the solution. Retaining them while they are in higher education or the workforce is also a challenge. To solve this, there is a need to show girls that computer science is a wide-open field that offers…

Millennium Open Pit Mine, Alberta, Canada

Science.gov (United States)

2007-01-01

Near Fort McMurray, Alberta, Canada, on the east bank of the Athabasca River, are found the Steepbank and Millennium mines. These open pit mines produce oil sands that are processed to recover bitumen, and then upgrade it to refinery-ready raw crude oil, and diesel fuel. The ASTER images were acquired September 22, 2000 and July 31, 2007, cover an area of 22.5 x 25.5 km, and are located near 57 degrees north latitude, 111.5 degrees west longitude. The U.S. science team is located at NASA's Jet Propulsion Laboratory, Pasadena, Calif. The Terra mission is part of NASA's Science Mission Directorate.

An open annotation ontology for science on web 3.0.

Science.gov (United States)

Ciccarese, Paolo; Ocana, Marco; Garcia Castro, Leyla Jael; Das, Sudeshna; Clark, Tim

2011-05-17

There is currently a gap between the rich and expressive collection of published biomedical ontologies, and the natural language expression of biomedical papers consumed on a daily basis by scientific researchers. The purpose of this paper is to provide an open, shareable structure for dynamic integration of biomedical domain ontologies with the scientific document, in the form of an Annotation Ontology (AO), thus closing this gap and enabling application of formal biomedical ontologies directly to the literature as it emerges. Initial requirements for AO were elicited by analysis of integration needs between biomedical web communities, and of needs for representing and integrating results of biomedical text mining. Analysis of strengths and weaknesses of previous efforts in this area was also performed. A series of increasingly refined annotation tools were then developed along with a metadata model in OWL, and deployed for feedback and additional requirements the ontology to users at a major pharmaceutical company and a major academic center. Further requirements and critiques of the model were also elicited through discussions with many colleagues and incorporated into the work. This paper presents Annotation Ontology (AO), an open ontology in OWL-DL for annotating scientific documents on the web. AO supports both human and algorithmic content annotation. It enables "stand-off" or independent metadata anchored to specific positions in a web document by any one of several methods. In AO, the document may be annotated but is not required to be under update control of the annotator. AO contains a provenance model to support versioning, and a set model for specifying groups and containers of annotation. AO is freely available under open source license at http://purl.org/ao/, and extensive documentation including screencasts is available on AO's Google Code page: http://code.google.com/p/annotation-ontology/ . The Annotation Ontology meets critical requirements for

Quantarctica: A Unique, Open, Standalone GIS Package for Antarctic Research and Education

Science.gov (United States)

Roth, George; Matsuoka, Kenichi; Skoglund, Anders; Melvær, Yngve; Tronstad, Stein

2017-04-01

The Norwegian Polar Institute has developed Quantarctica (http://quantarctica.npolar.no), an open GIS package for use by the international Antarctic community. Quantarctica includes a wide range of cartographic basemap layers, geophysical and glaciological datasets, and satellite imagery in standardized open file formats with a consistent Antarctic map projection and customized layer and labeling styles for quick, effective cartography. Quantarctica's strengths as an open science platform lie in 1) The complete, ready-to-use data package which includes full-resolution, original-quality vector and raster data, 2) A policy for freely-redistributable and modifiable data including all metadata and citations, and 3) QGIS, a free, full-featured, modular, offline-capable open-source GIS suite with a rapid and active development and support community. The Quantarctica team is actively incorporating more up-to-date, peer-reviewed, freely distributable pan-Antarctic geospatial datasets for the next version release in 2017. As part of this ongoing development, we are investigating the best approaches for quickly and seamlessly distributing new and updated data to users, storing datasets in efficient, open file formats while maintaining full data integrity, and coexisting with numerous online data portals in a way that most actively benefits the Antarctic community. A recent survey of Quantarctica users showed broad geographical adoption among Antarctic Treaty countries, including those outside the large US and UK Antarctic programs. Maps and figures produced by Quantarctica have also appeared in open-access journals and outside of the formal scientific community on popular science and GIS blogs. Our experience with the Quantarctica project has shown the tremendous value of education and outreach, not only in promoting open software, data formats, and practices, but in empowering Antarctic science groups to more effectively use GIS and geospatial data. Open practices are

Science, Technology, and YA Lit

Science.gov (United States)

Clemmons, Karina; Sheehy, Colleen

2011-01-01

Science teachers today need engaging projects to help students build 21st-century skills (NSTA 2011). Contemporary young adult literature (YA lit) can form the basis of one such project. YA lit--a genre of fiction geared toward 2 to 20-year-olds--opens a powerful avenue to connect with students and cover science topics in greater depth. YA lit is…

Large Scale Monte Carlo Simulation of Neutrino Interactions Using the Open Science Grid and Commercial Clouds

International Nuclear Information System (INIS)

Norman, A.; Boyd, J.; Davies, G.; Flumerfelt, E.; Herner, K.; Mayer, N.; Mhashilhar, P.; Tamsett, M.; Timm, S.

2015-01-01

Modern long baseline neutrino experiments like the NOvA experiment at Fermilab, require large scale, compute intensive simulations of their neutrino beam fluxes and backgrounds induced by cosmic rays. The amount of simulation required to keep the systematic uncertainties in the simulation from dominating the final physics results is often 10x to 100x that of the actual detector exposure. For the first physics results from NOvA this has meant the simulation of more than 2 billion cosmic ray events in the far detector and more than 200 million NuMI beam spill simulations. Performing these high statistics levels of simulation have been made possible for NOvA through the use of the Open Science Grid and through large scale runs on commercial clouds like Amazon EC2. We details the challenges in performing large scale simulation in these environments and how the computing infrastructure for the NOvA experiment has been adapted to seamlessly support the running of different simulation and data processing tasks on these resources. (paper)

Agricultural and Food Science Journal of Ghana

African Journals Online (AJOL)

The Agricultural and Food Science Journal of Ghana publishes papers describing research, observational or experimental and critical reviews in Agriculture and Food Science. Vol 10, No 1 (2017). DOWNLOAD FULL TEXT Open Access DOWNLOAD FULL TEXT Subscription or Fee Access. Table of Contents. Articles ...

Sustainable computational science

DEFF Research Database (Denmark)

Rougier, Nicolas; Hinsen, Konrad; Alexandre, Frédéric

2017-01-01

Computer science offers a large set of tools for prototyping, writing, running, testing, validating, sharing and reproducing results, however computational science lags behind. In the best case, authors may provide their source code as a compressed archive and they may feel confident their research...... workflows, in particular in peer-reviews. Existing journals have been slow to adapt: source codes are rarely requested, hardly ever actually executed to check that they produce the results advertised in the article. ReScience is a peer-reviewed journal that targets computational research and encourages...... the explicit replication of already published research, promoting new and open-source implementations in order to ensure that the original research can be replicated from its description. To achieve this goal, the whole publishing chain is radically different from other traditional scientific journals. ReScience...

Performance Determinants in Physical Sciences for ODL ...

African Journals Online (AJOL)

Identifying performance determinants in physical science subjects for students studying through open and distance learning modes in higher learning institutions requires wider range of intuition than it is for conventional institutions. Using data from The Open University of Tanzania, this paper has unearthed some of the ...