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Sample records for fully synthetic phospholipase-resistant

  1. Synthetic lung surfactants containing SP-B and SP-C peptides plus novel phospholipase-resistant lipids or glycerophospholipids

    Science.gov (United States)

    Notter, Robert H.; Gupta, Rohun; Schwan, Adrian L.; Wang, Zhengdong; Shkoor, Mohanad Gh

    2016-01-01

    Background This study examines the biophysical and preclinical pulmonary activity of synthetic lung surfactants containing novel phospholipase-resistant phosphonolipids or synthetic glycerophospholipids combined with Super Mini-B (S-MB) DATK and/or SP-Css ion-lock 1 peptides that replicate the functional biophysics of surfactant proteins (SP)-B and SP-C. Phospholipase-resistant phosphonolipids used in synthetic surfactants are DEPN-8 and PG-1, molecular analogs of dipalmitoyl phosphatidylcholine (DPPC) and palmitoyl-oleoyl phosphatidylglycerol (POPG), while glycerophospholipids used are active lipid components of native surfactant (DPPC:POPC:POPG 5:3:2 by weight). The objective of the work is to test whether these novel lipid/peptide synthetic surfactants have favorable preclinical activity (biophysical, pulmonary) for therapeutic use in reversing surfactant deficiency or dysfunction in lung disease or injury. Methods Surface activity of synthetic lipid/peptide surfactants was assessed in vitro at 37 °C by measuring adsorption in a stirred subphase apparatus and dynamic surface tension lowering in pulsating and captive bubble surfactometers. Shear viscosity was measured as a function of shear rate on a Wells-Brookfield micro-viscometer. In vivo pulmonary activity was determined by measuring lung function (arterial oxygenation, dynamic lung compliance) in ventilated rats and rabbits with surfactant deficiency/dysfunction induced by saline lavage to lower arterial PO2 to C. However, dual-peptide surfactants containing 1.5% S-MB DATK + 1.5% SP-Css ion-lock 1 combined with 9:1 DEPN-8:PG-1 or 5:3:2 DPPC:POPC:POPG had the greatest in vivo activity in improving arterial oxygenation and dynamic lung compliance in ventilated animals with ARDS. Saline dispersions of these dual-peptide synthetic surfactants were also found to have shear viscosities comparable to or below those of current animal-derived surfactant drugs, supporting their potential ease of deliverability by

  2. Synthetic lung surfactants containing SP-B and SP-C peptides plus novel phospholipase-resistant lipids or glycerophospholipids

    Directory of Open Access Journals (Sweden)

    Robert H. Notter

    2016-10-01

    Full Text Available Background This study examines the biophysical and preclinical pulmonary activity of synthetic lung surfactants containing novel phospholipase-resistant phosphonolipids or synthetic glycerophospholipids combined with Super Mini-B (S-MB DATK and/or SP-Css ion-lock 1 peptides that replicate the functional biophysics of surfactant proteins (SP-B and SP-C. Phospholipase-resistant phosphonolipids used in synthetic surfactants are DEPN-8 and PG-1, molecular analogs of dipalmitoyl phosphatidylcholine (DPPC and palmitoyl-oleoyl phosphatidylglycerol (POPG, while glycerophospholipids used are active lipid components of native surfactant (DPPC:POPC:POPG 5:3:2 by weight. The objective of the work is to test whether these novel lipid/peptide synthetic surfactants have favorable preclinical activity (biophysical, pulmonary for therapeutic use in reversing surfactant deficiency or dysfunction in lung disease or injury. Methods Surface activity of synthetic lipid/peptide surfactants was assessed in vitro at 37 °C by measuring adsorption in a stirred subphase apparatus and dynamic surface tension lowering in pulsating and captive bubble surfactometers. Shear viscosity was measured as a function of shear rate on a Wells-Brookfield micro-viscometer. In vivo pulmonary activity was determined by measuring lung function (arterial oxygenation, dynamic lung compliance in ventilated rats and rabbits with surfactant deficiency/dysfunction induced by saline lavage to lower arterial PO2 to <100 mmHg, consistent with clinical acute respiratory distress syndrome (ARDS. Results Synthetic surfactants containing 5:3:2 DPPC:POPC:POPG or 9:1 DEPN-8:PG-1 combined with 3% (by wt of S-MB DATK, 3% SP-Css ion-lock 1, or 1.5% each of both peptides all adsorbed rapidly to low equilibrium surface tensions and also reduced surface tension to ≤1 mN/m under dynamic compression at 37 °C. However, dual-peptide surfactants containing 1.5% S-MB DATK + 1.5% SP-Css ion-lock 1 combined with

  3. Comparison of Vibrations and Emissions of Conventional Jet Fuel with Stressed 100% SPK and Fully Formulated Synthetic Jet Fuel

    Directory of Open Access Journals (Sweden)

    Bhupendra Khandelwal

    2014-08-01

    Full Text Available The rapid growth of the aviation sector around the globe has witnessed an overwhelming impact on fossil fuel resources. With the implementation of stricter environmental laws over emissions by conventional jet fuels, growing demand for research on alternative fuels has become imperative. One-hundred percent Synthetic Paraffinic Kerosene (SPK and Fully Formulated Synthetic Jet Fuel have surfaced as viable alternatives for gas turbine engines due to their similar properties as that of Jet Fuel. This paper presents results from an experimental study performed on a small gas turbine engine, comparing emissions performance and vibrations for conventional Jet A-1 Fuel, thermally stressed 100% SPK and Fully Formulated Synthetic Jet Fuel. Different vibration frequencies, power spectra were observed for different fuels. Gaseous emissions observed were nearly the same, whereas, significant changes in particulates emissions were observed.

  4. A fully synthetic human Fab antibody library based on fixed VH/VL framework pairings with favorable biophysical properties.

    Science.gov (United States)

    Tiller, Thomas; Schuster, Ingrid; Deppe, Dorothée; Siegers, Katja; Strohner, Ralf; Herrmann, Tanja; Berenguer, Marion; Poujol, Dominique; Stehle, Jennifer; Stark, Yvonne; Heßling, Martin; Daubert, Daniela; Felderer, Karin; Kaden, Stefan; Kölln, Johanna; Enzelberger, Markus; Urlinger, Stefanie

    2013-01-01

    This report describes the design, generation and testing of Ylanthia, a fully synthetic human Fab antibody library with 1.3E+11 clones. Ylanthia comprises 36 fixed immunoglobulin (Ig) variable heavy (VH)/variable light (VL) chain pairs, which cover a broad range of canonical complementarity-determining region (CDR) structures. The variable Ig heavy and Ig light (VH/VL) chain pairs were selected for biophysical characteristics favorable to manufacturing and development. The selection process included multiple parameters, e.g., assessment of protein expression yield, thermal stability and aggregation propensity in fragment antigen binding (Fab) and IgG1 formats, and relative Fab display rate on phage. The framework regions are fixed and the diversified CDRs were designed based on a systematic analysis of a large set of rearranged human antibody sequences. Care was taken to minimize the occurrence of potential posttranslational modification sites within the CDRs. Phage selection was performed against various antigens and unique antibodies with excellent biophysical properties were isolated. Our results confirm that quality can be built into an antibody library by prudent selection of unmodified, fully human VH/VL pairs as scaffolds.

  5. Synthetic

    Directory of Open Access Journals (Sweden)

    Anna Maria Manferdini

    2010-06-01

    Full Text Available Traditionally materials have been associated with a series of physical properties that can be used as inputs to production and manufacturing. Recently we witnessed an interest in materials considered not only as ‘true matter’, but also as new breeds where geometry, texture, tooling and finish are able to provoke new sensations when they are applied to a substance. These artificial materials can be described as synthetic because they are the outcome of various qualities that are not necessarily true to the original matter, but they are the combination of two or more parts, whether by design or by natural processes. The aim of this paper is to investigate the potential of architectural surfaces to produce effects through the invention of new breeds of artificial matter, using micro-scale details derived from Nature as an inspiration.

  6. Offshore platform sourced pollution monitoring using space-borne fully polarimetric C and X band synthetic aperture radar.

    Science.gov (United States)

    Singha, Suman; Ressel, Rudolf

    2016-11-15

    Use of polarimetric SAR data for offshore pollution monitoring is relatively new and shows great potential for operational offshore platform monitoring. This paper describes the development of an automated oil spill detection chain for operational purposes based on C-band (RADARSAT-2) and X-band (TerraSAR-X) fully polarimetric images, wherein we use polarimetric features to characterize oil spills and look-alikes. Numbers of near coincident TerraSAR-X and RADARSAT-2 images have been acquired over offshore platforms. Ten polarimetric feature parameters were extracted from different types of oil and 'look-alike' spots and divided into training and validation dataset. Extracted features were then used to develop a pixel based Artificial Neural Network classifier. Mutual information contents among extracted features were assessed and feature parameters were ranked according to their ability to discriminate between oil spill and look-alike spots. Polarimetric features such as Scattering Diversity, Surface Scattering Fraction and Span proved to be most suitable for operational services. Copyright © 2016 Elsevier Ltd. All rights reserved.

  7. Synthetic rubber surface as an alternative to concrete to improve welfare and performance of finishing beef cattle reared on fully slatted flooring.

    Science.gov (United States)

    Brscic, M; Ricci, R; Prevedello, P; Lonardi, C; De Nardi, R; Contiero, B; Gottardo, F; Cozzi, G

    2015-08-01

    The aim of this study was to compare a fully slatted concrete floor (concrete slatted (CS)) with the same floor on which synthetic rubber slats were placed on the concrete slats (rubber slatted (RS)) as housing solution for finishing beef cattle. The present study involved five commercial beef cattle farms in which the floor of at least three pens was kept as fully slatted, and in an equal number of pens a rubber cover was placed on the floor, tightly matching the gap profile of the concrete slats to allow the drainage of manure. A total of 326 finishing beef bulls were used (153 on CS and 173 on RS), and regardless of the floor treatment animals were housed in groups of 6 to 12 bulls/pen with a space allowance of 3.1 ± 0.2 m2/bull. Bulls had similar initial live weights (422.3 kg on CS and 425.0 kg on RS), but bulls on RS were heavier at the end of the finishing period with a higher average daily gain than bulls kept on CS (1.53 v. 1.46 kg/day; PRubber covering prevented the occurrence of bursitis, but it increased the odds for hoof overgrowth at end of the finishing period. Hoof overgrowth detected in vivo in bulls on RS was confirmed at the slaughterhouse by the longer dorsal wall and diagonal lengths of the hoof as well as by a more acute toe angle. Compared with bulls on CS, bulls on RS showed less inactivity and resting time, increased social interactions, decreased abnormal lying down and unsuccessful attempts to lie down, as well as shortened the time for lying down. Bulls in RS pens were dirtier compared with those in CS pens, likely due to the draining gaps being reduced to 11.6 ± 1.2% of the total pen surface compared with the 16.9 ± 1.7% in CS pens. This study gave further evidence about the positive effects of the RS floor on growth performance and welfare of finishing beef cattle, although compromising cleanliness and hoof overgrowth.

  8. The fully synthetic MAG-Tn3 therapeutic vaccine containing the tetanus toxoid-derived TT830-844 universal epitope provides anti-tumor immunity.

    Science.gov (United States)

    Laubreton, Daphné; Bay, Sylvie; Sedlik, Christine; Artaud, Cécile; Ganneau, Christelle; Dériaud, Edith; Viel, Sophie; Puaux, Anne-Laure; Amigorena, Sebastian; Gérard, Catherine; Lo-Man, Richard; Leclerc, Claude

    2016-03-01

    Malignant transformations are often associated with aberrant glycosylation processes that lead to the expression of new carbohydrate antigens at the surface of tumor cells. Of these carbohydrate antigens, the Tn antigen is particularly highly expressed in many carcinomas, especially in breast carcinoma. We designed MAG-Tn3, a fully synthetic vaccine based on three consecutive Tn moieties that are O-linked to a CD4+ T cell epitope, to induce anti-Tn antibody responses that could be helpful for therapeutic vaccination against cancer. To ensure broad coverage within the human population, the tetanus toxoid-derived peptide TT830-844 was selected as a T-helper epitope because it can bind to various HLA-DRB molecules. We showed that the MAG-Tn3 vaccine, which was formulated with the GSK proprietary immunostimulant AS15 and designed for human cancer therapy, is able to induce an anti-Tn antibody response in mice of various H-2 haplotypes, and this response correlates with the ability to induce a specific T cell response against the TT830-844 peptide. The universality of the TT830-844 peptide was extended to new H-2 and HLA-DRB molecules that were capable of binding this T cell epitope. Finally, the MAG-Tn3 vaccine was able to induce anti-Tn antibody responses in cynomolgus monkeys, which targeted Tn-expressing tumor cells and mediated tumor cell death both in vitro and in vivo. Thus, MAG-Tn3 is a highly promising anticancer vaccine that is currently under evaluation in a phase I clinical trial.

  9. Advanced 3-D Ultrasound Imaging: 3-D Synthetic Aperture Imaging using Fully Addressed and Row-Column Addressed 2-D Transducer Arrays

    DEFF Research Database (Denmark)

    Bouzari, Hamed

    with transducer arrays using this addressing scheme, when integrated into probe handles. For that reason, two in-house prototyped 62+62 row-column addressed 2-D array transducer probes were manufactured using capacitive micromachined ultrasonic transducer (CMUT) and piezoelectric transducer (PZT) technology...... in many clinical applications. Real-time 3-D ultrasound imaging is still not as widespread in use in the clinics as 2-D ultrasound imaging. Two limiting factors have traditionally been the low image quality as well as low volume rate achievable with a 2-D transducer array using the conventional 3-D...... and measurements with the ultrasound research scanner SARUS and a 3.8 MHz 1024 element 2-D transducer array. In all investigations, 3-D synthetic aperture imaging achieved a better resolution, lower side-lobes, higher contrast, and better signal to noise ratio than parallel beamforming. This is achieved partly...

  10. Freedom and Responsibility in Synthetic Genomics: The Synthetic Yeast Project

    OpenAIRE

    Sliva, Anna; Yang, Huanming; Boeke, Jef D.; Debra J. H. Mathews

    2015-01-01

    First introduced in 2011, the Synthetic Yeast Genome (Sc2.0) Project is a large international synthetic genomics project that will culminate in the first eukaryotic cell (Saccharomyces cerevisiae) with a fully synthetic genome. With collaborators from across the globe and from a range of institutions spanning from do-it-yourself biology (DIYbio) to commercial enterprises, it is important that all scientists working on this project are cognizant of the ethical and policy issues associated with...

  11. Wavefield Synthetics in 3D and Fully Automatic Event Locations,

    Science.gov (United States)

    1995-08-14

    approximation (Ryzhikov and Troyan 1992 a,b) and presuming linearity of w with respect to f, we may rewrite eq.(11) for dimensionless values I = f/fm...production, Bull.Seism.Soc.Am, 83, 660-679. Ryzhikov, G.A. and Troyan , V.N., 1992a. Diffraction tomography. Part 1: Construction and in- terpretation...Ryzhikov, G.A. and Troyan , V.N., 1992b. Diffraction tomography. Part 2: Reconstruction al- gorithm with statistical regularization, in Proceedings of

  12. A novel fully conjugated phenanthroline-appended phthalocyanine: synthesis and characterisation.

    Science.gov (United States)

    Rusanova, Julia; Pilkington, Melanie; Decurtins, Silvio

    2002-10-07

    The synthetic route to a new fully conjugated phenanthroline appended phthalocyanine is described. This compound has been fully characterised by elemental analysis, UV-VIS, IR, MS and 1H NMR spectroscopy.

  13. Synthetic environments

    Science.gov (United States)

    Lukes, George E.; Cain, Joel M.

    1996-02-01

    The Advanced Distributed Simulation (ADS) Synthetic Environments Program seeks to create robust virtual worlds from operational terrain and environmental data sources of sufficient fidelity and currency to interact with the real world. While some applications can be met by direct exploitation of standard digital terrain data, more demanding applications -- particularly those support operations 'close to the ground' -- are well-served by emerging capabilities for 'value-adding' by the user working with controlled imagery. For users to rigorously refine and exploit controlled imagery within functionally different workstations they must have a shared framework to allow interoperability within and between these environments in terms of passing image and object coordinates and other information using a variety of validated sensor models. The Synthetic Environments Program is now being expanded to address rapid construction of virtual worlds with research initiatives in digital mapping, softcopy workstations, and cartographic image understanding. The Synthetic Environments Program is also participating in a joint initiative for a sensor model applications programer's interface (API) to ensure that a common controlled imagery exploitation framework is available to all researchers, developers and users. This presentation provides an introduction to ADS and the associated requirements for synthetic environments to support synthetic theaters of war. It provides a technical rationale for exploring applications of image understanding technology to automated cartography in support of ADS and related programs benefitting from automated analysis of mapping, earth resources and reconnaissance imagery. And it provides an overview and status of the joint initiative for a sensor model API.

  14. Synthetic foldamers.

    Science.gov (United States)

    Guichard, Gilles; Huc, Ivan

    2011-06-07

    Foldamers are artificial folded molecular architectures inspired by the structures and functions of biopolymers. This highlight focuses on important developments concerning foldamers produced by chemical synthesis and on the perspectives that these new self-organized molecular scaffolds offer. Progress in the field has led to synthetic objects that resemble small proteins in terms of size and complexity yet that may not contain any α-amino acids. Foldamers have introduced new tools and concepts to develop biologically active substances, synthetic receptors and novel materials.

  15. Synthetic Astrobiology

    Science.gov (United States)

    Rothschild, Lynn J.

    2016-01-01

    Synthetic biology - the design and construction of new biological parts and systems and the redesign of existing ones for useful purposes - has the potential to transform fields from pharmaceuticals to fuels. Our lab has focused on the potential of synthetic biology to revolutionize all three major parts of astrobiology: Where do we come from? Where are we going? and Are we alone? For the first and third, synthetic biology is allowing us to answer whether the evolutionary narrative that has played out on planet earth is likely to have been unique or universal. For example, in our lab we are re-evolving the biosynthetic pathways of amino acids in order to understand potential capabilities of an early organism with a limited repertoire of amino acids and developing techniques for the recovery of metals from spent electronics on other planetary bodies. And what about the limits for life? Can we create organisms that expand the envelope for life? In the future synthetic biology will play an increasing role in human activities both on earth, in fields as diverse as human health and the industrial production of novel bio-composites. Beyond earth, we will rely increasingly on biologically-provided life support, as we have throughout our evolutionary history. In order to do this, the field will build on two of the great contributions of astrobiology: studies of the origin of life and life in extreme environments.

  16. Synthetic Astrobiology

    Science.gov (United States)

    Rothschild, Lynn J.

    2015-01-01

    Synthetic biology - the design and construction of new biological parts and systems and the redesign of existing ones for useful purposes - has the potential to transform fields from pharmaceuticals to fuels. Our lab has focused on the potential of synthetic biology to revolutionize all three major parts of astrobiology: Where do we come from? Where are we going? and Are we alone? For the first and third, synthetic biology is allowing us to answer whether the evolutionary narrative that has played out on planet earth is likely to have been unique or universal. For example, in our lab we are re-evolving the biosynthetic pathways of amino acids in order to understand potential capabilities of an early organism with a limited repertoire of amino acids and developing techniques for the recovery of metals from spent electronics on other planetary bodies. In the future synthetic biology will play an increasing role in human activities both on earth, in fields as diverse as human health and the industrial production of novel bio-composites. Beyond earth, we will rely increasingly on biologically-provided life support, as we have throughout our evolutionary history. In order to do this, the field will build on two of the great contributions of astrobiology: studies of the origin of life and life in extreme environments.

  17. Android Fully Loaded

    CERN Document Server

    Huddleston, Rob

    2012-01-01

    Fully loaded with the latest tricks and tips on your new Android! Android smartphones are so hot, they're soaring past iPhones on the sales charts. And the second edition of this muscular little book is equally impressive--it's packed with tips and tricks for getting the very most out of your latest-generation Android device. Start Facebooking and tweeting with your Android mobile, scan barcodes to get pricing and product reviews, download your favorite TV shows--the book is positively bursting with practical and fun how-tos. Topics run the gamut from using speech recognition, location-based m

  18. On Fully Homomorphic Encryption

    OpenAIRE

    Fauzi, Prastudy

    2012-01-01

    Fully homomorphic encryption is an encryption scheme where a party can receive encrypted data and perform arbitrary operations on this data efficiently.The data remains encrypted throughout, but the operations can be done regardless, without having to know the decryption key.Such a scheme would be very advantageous, for example in ensuring the privacy of data that is sent to a third-party service.This is in contrast with schemes like Paillier where you can not perform a multiplication of encr...

  19. Synthetic chromosomes.

    Science.gov (United States)

    Schindler, Daniel; Waldminghaus, Torsten

    2015-11-01

    What a living organism looks like and how it works and what are its components-all this is encoded on DNA, the genetic blueprint. Consequently, the way to change an organism is to change its genetic information. Since the first pieces of recombinant DNA have been used to transform cells in the 1970s, this approach has been enormously extended. Bigger and bigger parts of the genetic information have been exchanged or added over the years. Now we are at a point where the construction of entire chromosomes becomes a reachable goal and first examples appear. This development leads to fundamental new questions, for example, about what is possible and desirable to build or what construction rules one needs to follow when building synthetic chromosomes. Here we review the recent progress in the field, discuss current challenges and speculate on the appearance of future synthetic chromosomes.

  20. Fully Awake Breast Reduction.

    Science.gov (United States)

    Filson, Simon A; Yarhi, Danielle; Ramon, Yitzhak

    2016-11-01

    The authors present 25 cases and an in-depth 4-minute video of fully awake aesthetic breast reduction, which was made possible by thoracic epidural anesthesia. There are obvious and important advantages to this technique. Not only does this allow for intraoperative patient cooperation (i.e., patient self-positioning and opinion for comparison of breasts), meaning a shorter and more efficient intraoperative time, there also is a reduction in postoperative pain, complications, recovery, and discharge times. The authors have also enjoyed great success and no complications with this technique in over 150 awake abdominoplasty/total body lift patients. The authors feel that the elimination of the need for general anesthesia by thoracic epidural sensorial-only anesthesia is a highly effective and efficient technique, with very few disadvantages/complications, providing advantages to both patients and surgeons. Therapeutic, IV.

  1. Synthetic Cannabinoids.

    Science.gov (United States)

    Mills, Brooke; Yepes, Andres; Nugent, Kenneth

    2015-07-01

    Synthetic cannabinoids (SCBs), also known under the brand names of "Spice," "K2," "herbal incense," "Cloud 9," "Mojo" and many others, are becoming a large public health concern due not only to their increasing use but also to their unpredictable toxicity and abuse potential. There are many types of SCBs, each having a unique binding affinity for cannabinoid receptors. Although both Δ-tetrahydrocannabinol (THC) and SCBs stimulate the same receptors, cannabinoid receptor 1 (CB1) and cannabinoid receptor 2 (CB2), studies have shown that SCBs are associated with higher rates of toxicity and hospital admissions than is natural cannabis. This is likely due to SCBs being direct agonists of the cannabinoid receptors, whereas THC is a partial agonist. Furthermore, the different chemical structures of SCBs found in Spice or K2 may interact in unpredictable ways to elicit previously unknown, and the commercial products may have unknown contaminants. The largest group of users is men in their 20s who participate in polydrug use. The most common reported toxicities with SCB use based on studies using Texas Poison Control records are tachycardia, agitation and irritability, drowsiness, hallucinations, delusions, hypertension, nausea, confusion, dizziness, vertigo and chest pain. Acute kidney injury has also been strongly associated with SCB use. Treatment mostly involves symptom management and supportive care. More research is needed to identify which contaminants are typically found in synthetic marijuana and to understand the interactions between different SBCs to better predict adverse health outcomes.

  2. Natural - synthetic - artificial!

    DEFF Research Database (Denmark)

    Nielsen, Peter E

    2010-01-01

    The terms "natural," "synthetic" and "artificial" are discussed in relation to synthetic and artificial chromosomes and genomes, synthetic and artificial cells and artificial life.......The terms "natural," "synthetic" and "artificial" are discussed in relation to synthetic and artificial chromosomes and genomes, synthetic and artificial cells and artificial life....

  3. Fully electric waste collection

    CERN Multimedia

    Anaïs Schaeffer

    2015-01-01

    Since 15 June, Transvoirie, which provides waste collection services throughout French-speaking Switzerland, has been using a fully electric lorry for its collections on the CERN site – a first for the region!   Featuring a motor powered by electric batteries that charge up when the brakes are used, the new lorry that roams the CERN site is as green as can be. And it’s not only the motor that’s electric: its waste compactor and lifting mechanism are also electrically powered*, making it the first 100% electric waste collection vehicle in French-speaking Switzerland. Considering that a total of 15.5 tonnes of household waste and paper/cardboard are collected each week from the Meyrin and Prévessin sites, the benefits for the environment are clear. This improvement comes as part of CERN’s contract with Transvoirie, which stipulates that the firm must propose ways of becoming more environmentally friendly (at no extra cost to CERN). *The was...

  4. Synthetic Brainbows

    KAUST Repository

    Wan, Y.

    2013-06-01

    Brainbow is a genetic engineering technique that randomly colorizes cells. Biological samples processed with this technique and imaged with confocal microscopy have distinctive colors for individual cells. Complex cellular structures can then be easily visualized. However, the complexity of the Brainbow technique limits its applications. In practice, most confocal microscopy scans use different florescence staining with typically at most three distinct cellular structures. These structures are often packed and obscure each other in rendered images making analysis difficult. In this paper, we leverage a process known as GPU framebuffer feedback loops to synthesize Brainbow-like images. In addition, we incorporate ID shuffing and Monte-Carlo sampling into our technique, so that it can be applied to single-channel confocal microscopy data. The synthesized Brainbow images are presented to domain experts with positive feedback. A user survey demonstrates that our synthetic Brainbow technique improves visualizations of volume data with complex structures for biologists.

  5. Testing fully depleted CCD

    Science.gov (United States)

    Casas, Ricard; Cardiel-Sas, Laia; Castander, Francisco J.; Jiménez, Jorge; de Vicente, Juan

    2014-08-01

    The focal plane of the PAU camera is composed of eighteen 2K x 4K CCDs. These devices, plus four spares, were provided by the Japanese company Hamamatsu Photonics K.K. with type no. S10892-04(X). These detectors are 200 μm thick fully depleted and back illuminated with an n-type silicon base. They have been built with a specific coating to be sensitive in the range from 300 to 1,100 nm. Their square pixel size is 15 μm. The read-out system consists of a Monsoon controller (NOAO) and the panVIEW software package. The deafualt CCD read-out speed is 133 kpixel/s. This is the value used in the calibration process. Before installing these devices in the camera focal plane, they were characterized using the facilities of the ICE (CSIC- IEEC) and IFAE in the UAB Campus in Bellaterra (Barcelona, Catalonia, Spain). The basic tests performed for all CCDs were to obtain the photon transfer curve (PTC), the charge transfer efficiency (CTE) using X-rays and the EPER method, linearity, read-out noise, dark current, persistence, cosmetics and quantum efficiency. The X-rays images were also used for the analysis of the charge diffusion for different substrate voltages (VSUB). Regarding the cosmetics, and in addition to white and dark pixels, some patterns were also found. The first one, which appears in all devices, is the presence of half circles in the external edges. The origin of this pattern can be related to the assembly process. A second one appears in the dark images, and shows bright arcs connecting corners along the vertical axis of the CCD. This feature appears in all CCDs exactly in the same position so our guess is that the pattern is due to electrical fields. Finally, and just in two devices, there is a spot with wavelength dependence whose origin could be the result of a defectous coating process.

  6. Freedom and Responsibility in Synthetic Genomics: The Synthetic Yeast Project.

    Science.gov (United States)

    Sliva, Anna; Yang, Huanming; Boeke, Jef D; Mathews, Debra J H

    2015-08-01

    First introduced in 2011, the Synthetic Yeast Genome (Sc2.0) PROJECT is a large international synthetic genomics project that will culminate in the first eukaryotic cell (Saccharomyces cerevisiae) with a fully synthetic genome. With collaborators from across the globe and from a range of institutions spanning from do-it-yourself biology (DIYbio) to commercial enterprises, it is important that all scientists working on this project are cognizant of the ethical and policy issues associated with this field of research and operate under a common set of principles. In this commentary, we survey the current ethics and regulatory landscape of synthetic biology and present the Sc2.0 Statement of Ethics and Governance to which all members of the project adhere. This statement focuses on four aspects of the Sc2.0 PROJECT: societal benefit, intellectual property, safety, and self-governance. We propose that such project-level agreements are an important, valuable, and flexible model of self-regulation for similar global, large-scale synthetic biology projects in order to maximize the benefits and minimize potential harms. Copyright © 2015 by the Genetics Society of America.

  7. Freedom and Responsibility in Synthetic Genomics: The Synthetic Yeast Project

    Science.gov (United States)

    Sliva, Anna; Yang, Huanming; Boeke, Jef D.; Mathews, Debra J. H.

    2015-01-01

    First introduced in 2011, the Synthetic Yeast Genome (Sc2.0) Project is a large international synthetic genomics project that will culminate in the first eukaryotic cell (Saccharomyces cerevisiae) with a fully synthetic genome. With collaborators from across the globe and from a range of institutions spanning from do-it-yourself biology (DIYbio) to commercial enterprises, it is important that all scientists working on this project are cognizant of the ethical and policy issues associated with this field of research and operate under a common set of principles. In this commentary, we survey the current ethics and regulatory landscape of synthetic biology and present the Sc2.0 Statement of Ethics and Governance to which all members of the project adhere. This statement focuses on four aspects of the Sc2.0 Project: societal benefit, intellectual property, safety, and self-governance. We propose that such project-level agreements are an important, valuable, and flexible model of self-regulation for similar global, large-scale synthetic biology projects in order to maximize the benefits and minimize potential harms. PMID:26272997

  8. Synthetic Astrobiology

    Science.gov (United States)

    Rothschild, Lynn J.

    2017-01-01

    "Are we alone?" is one of the primary questions of astrobiology, and whose answer defines our significance in the universe. Unfortunately, this quest is hindered by the fact that we have only one confirmed example of life, that of earth. While this is enormously helpful in helping to define the minimum envelope for life, it strains credulity to imagine that life, if it arose multiple times, has not taken other routes. To help fill this gap, our lab has begun using synthetic biology - the design and construction of new biological parts and systems and the redesign of existing ones for useful purposes - as an enabling technology. One theme, the "Hell Cell" project, focuses on creating artificial extremophiles in order to push the limits for Earth life, and to understand how difficult it is for life to evolve into extreme niches. In another project, we are re-evolving biotic functions using only the most thermodynamically stable amino acids in order to understand potential capabilities of an early organism with a limited repertoire of amino acids.

  9. DNA recognition by synthetic constructs.

    Science.gov (United States)

    Pazos, Elena; Mosquera, Jesús; Vázquez, M Eugenio; Mascareñas, José L

    2011-09-05

    The interaction of transcription factors with specific DNA sites is key for the regulation of gene expression. Despite the availability of a large body of structural data on protein-DNA complexes, we are still far from fully understanding the molecular and biophysical bases underlying such interactions. Therefore, the development of non-natural agents that can reproduce the DNA-recognition properties of natural transcription factors remains a major and challenging goal in chemical biology. In this review we summarize the basics of double-stranded DNA recognition by transcription factors, and describe recent developments in the design and preparation of synthetic DNA binders. We mainly focus on synthetic peptides that have been designed by following the DNA interaction of natural proteins, and we discuss how the tools of organic synthesis can be used to make artificial constructs equipped with functionalities that introduce additional properties to the recognition process, such as sensing and controllability.

  10. Synthetic biology, inspired by synthetic chemistry.

    Science.gov (United States)

    Malinova, V; Nallani, M; Meier, W P; Sinner, E K

    2012-07-16

    The topic synthetic biology appears still as an 'empty basket to be filled'. However, there is already plenty of claims and visions, as well as convincing research strategies about the theme of synthetic biology. First of all, synthetic biology seems to be about the engineering of biology - about bottom-up and top-down approaches, compromising complexity versus stability of artificial architectures, relevant in biology. Synthetic biology accounts for heterogeneous approaches towards minimal and even artificial life, the engineering of biochemical pathways on the organismic level, the modelling of molecular processes and finally, the combination of synthetic with nature-derived materials and architectural concepts, such as a cellular membrane. Still, synthetic biology is a discipline, which embraces interdisciplinary attempts in order to have a profound, scientific base to enable the re-design of nature and to compose architectures and processes with man-made matter. We like to give an overview about the developments in the field of synthetic biology, regarding polymer-based analogs of cellular membranes and what questions can be answered by applying synthetic polymer science towards the smallest unit in life, namely a cell.

  11. Chordal Graphs are Fully Orientable

    CERN Document Server

    Lai, Hsin-Hao

    2012-01-01

    Suppose that D is an acyclic orientation of a graph G. An arc of D is called dependent if its reversal creates a directed cycle. Let m and M denote the minimum and the maximum of the number of dependent arcs over all acyclic orientations of G. We call G fully orientable if G has an acyclic orientation with exactly d dependent arcs for every d satisfying m <= d <= M. A graph G is called chordal if every cycle in G of length at least four has a chord. We show that all chordal graphs are fully orientable.

  12. Plant synthetic biology.

    Science.gov (United States)

    Liu, Wusheng; Stewart, C Neal

    2015-05-01

    Plant synthetic biology is an emerging field that combines engineering principles with plant biology toward the design and production of new devices. This emerging field should play an important role in future agriculture for traditional crop improvement, but also in enabling novel bioproduction in plants. In this review we discuss the design cycles of synthetic biology as well as key engineering principles, genetic parts, and computational tools that can be utilized in plant synthetic biology. Some pioneering examples are offered as a demonstration of how synthetic biology can be used to modify plants for specific purposes. These include synthetic sensors, synthetic metabolic pathways, and synthetic genomes. We also speculate about the future of synthetic biology of plants.

  13. Synthetic Cathinones ("Bath Salts")

    Science.gov (United States)

    ... A recent study found that 3,4-methylenedioxypyrovalerone (MDPV), a common synthetic cathinone, affects the brain in ... but is at least 10 times more powerful. MDPV is the most common synthetic cathinone found in ...

  14. What Are Synthetic Cannabinoids?

    Science.gov (United States)

    ... dried plant materials. Chemical tests show that their active ingredients are man-made cannabinoid compounds. Synthetic cannabinoid users report some effects similar to those produced by marijuana: elevated mood relaxation altered perception symptoms of psychosis Synthetic cannabinoids can ...

  15. [From synthetic biology to synthetic humankind].

    Science.gov (United States)

    Nouvel, Pascal

    2015-01-01

    In this paper, we propose an historical survey of the expression "synthetic biology" in order to identify its main philosophical components. The result of the analysis is then used to investigate the meaning of the notion of "synthetic man". It is shown that both notions share a common philosophical background that can be summed up by the short but meaningful assertion: "biology is technology". The analysis allows us to distinguish two notions that are often confused in transhumanist literature: the notion of synthetic man and the notion of renewed man. The consequences of this crucial distinction are discussed. Copyright © 2015 Académie des sciences. Published by Elsevier SAS. All rights reserved.

  16. Physics of Fully Depleted CCDs

    CERN Document Server

    Holland, S E; Kolbe, W F; Lee, J S

    2014-01-01

    In this work we present simple, physics-based models for two effects that have been noted in the fully depleted CCDs that are presently used in the Dark Energy Survey Camera. The first effect is the observation that the point-spread function increases slightly with the signal level. This is explained by considering the effect on charge-carrier diffusion due to the reduction in the magnitude of the channel potential as collected signal charge acts to partially neutralize the fixed charge in the depleted channel. The resulting reduced voltage drop across the carrier drift region decreases the vertical electric field and increases the carrier transit time. The second effect is the observation of low-level, concentric ring patterns seen in uniformly illuminated images. This effect is shown to be most likely due to lateral deflection of charge during the transit of the photogenerated carriers to the potential wells as a result of lateral electric fields. The lateral fields are a result of space charge in the fully...

  17. Fully integrated, fully automated generation of short tandem repeat profiles

    Science.gov (United States)

    2013-01-01

    Background The generation of short tandem repeat profiles, also referred to as ‘DNA typing,’ is not currently performed outside the laboratory because the process requires highly skilled technical operators and a controlled laboratory environment and infrastructure with several specialized instruments. The goal of this work was to develop a fully integrated system for the automated generation of short tandem repeat profiles from buccal swab samples, to improve forensic laboratory process flow as well as to enable short tandem repeat profile generation to be performed in police stations and in field-forward military, intelligence, and homeland security settings. Results An integrated system was developed consisting of an injection-molded microfluidic BioChipSet cassette, a ruggedized instrument, and expert system software. For each of five buccal swabs, the system purifies DNA using guanidinium-based lysis and silica binding, amplifies 15 short tandem repeat loci and the amelogenin locus, electrophoretically separates the resulting amplicons, and generates a profile. No operator processing of the samples is required, and the time from swab insertion to profile generation is 84 minutes. All required reagents are contained within the BioChipSet cassette; these consist of a lyophilized polymerase chain reaction mix and liquids for purification and electrophoretic separation. Profiles obtained from fully automated runs demonstrate that the integrated system generates concordant short tandem repeat profiles. The system exhibits single-base resolution from 100 to greater than 500 bases, with inter-run precision with a standard deviation of ±0.05 - 0.10 bases for most alleles. The reagents are stable for at least 6 months at 22°C, and the instrument has been designed and tested to Military Standard 810F for shock and vibration ruggedization. A nontechnical user can operate the system within or outside the laboratory. Conclusions The integrated system represents the

  18. Fully automated (operational) modal analysis

    Science.gov (United States)

    Reynders, Edwin; Houbrechts, Jeroen; De Roeck, Guido

    2012-05-01

    Modal parameter estimation requires a lot of user interaction, especially when parametric system identification methods are used and the modes are selected in a stabilization diagram. In this paper, a fully automated, generally applicable three-stage clustering approach is developed for interpreting such a diagram. It does not require any user-specified parameter or threshold value, and it can be used in an experimental, operational, and combined vibration testing context and with any parametric system identification algorithm. The three stages of the algorithm correspond to the three stages in a manual analysis: setting stabilization thresholds for clearing out the diagram, detecting columns of stable modes, and selecting a representative mode from each column. An extensive validation study illustrates the accuracy and robustness of this automation strategy.

  19. Singularities in fully developed turbulence

    Energy Technology Data Exchange (ETDEWEB)

    Shivamoggi, Bhimsen K., E-mail: bhimsen.shivamoggi@ucf.edu

    2015-09-18

    Phenomenological arguments are used to explore finite-time singularity (FTS) development in different physical fully-developed turbulence (FDT) situations. Effects of spatial intermittency and fluid compressibility in three-dimensional (3D) FDT and the role of the divorticity amplification mechanism in two-dimensional (2D) FDT and quasi-geostrophic FDT and the advection–diffusion mechanism in magnetohydrodynamic turbulence are considered to provide physical insights into the FTS development in variant cascade physics situations. The quasi-geostrophic FDT results connect with the 2D FDT results in the barotropic limit while they connect with 3D FDT results in the baroclinic limit and hence apparently provide a bridge between 2D and 3D. - Highlights: • Finite-time singularity development in turbulence situations is phenomenologically explored. • Spatial intermittency and compressibility effects are investigated. • Quasi-geostrophic turbulence is shown to provide a bridge between two-dimensional and three-dimensional cases.

  20. Designing synthetic biology.

    Science.gov (United States)

    Agapakis, Christina M

    2014-03-21

    Synthetic biology is frequently defined as the application of engineering design principles to biology. Such principles are intended to streamline the practice of biological engineering, to shorten the time required to design, build, and test synthetic gene networks. This streamlining of iterative design cycles can facilitate the future construction of biological systems for a range of applications in the production of fuels, foods, materials, and medicines. The promise of these potential applications as well as the emphasis on design has prompted critical reflection on synthetic biology from design theorists and practicing designers from many fields, who can bring valuable perspectives to the discipline. While interdisciplinary connections between biologists and engineers have built synthetic biology via the science and the technology of biology, interdisciplinary collaboration with artists, designers, and social theorists can provide insight on the connections between technology and society. Such collaborations can open up new avenues and new principles for research and design, as well as shed new light on the challenging context-dependence-both biological and social-that face living technologies at many scales. This review is inspired by the session titled "Design and Synthetic Biology: Connecting People and Technology" at Synthetic Biology 6.0 and covers a range of literature on design practice in synthetic biology and beyond. Critical engagement with how design is used to shape the discipline opens up new possibilities for how we might design the future of synthetic biology.

  1. Restaurant No. 1 fully renovated

    CERN Multimedia

    2007-01-01

    The Restaurant No. 1 team. After several months of patience and goodwill on the part of our clients, we are delighted to announce that the major renovation work which began in September 2006 has now been completed. From 21 May 2007 we look forward to welcoming you to a completely renovated restaurant area designed with you in mind. The restaurant team wishes to thank all its clients for their patience and loyalty. Particular attention has been paid in the new design to creating a spacious serving area and providing a wider choice of dishes. The new restaurant area has been designed as an open-plan space to enable you to view all the dishes before making your selection and to move around freely from one food access point to another. It comprises user-friendly areas that fully comply with hygiene standards. From now on you will be able to pick and choose to your heart's content. We invite you to try out wok cooking or some other speciality. Or select a pizza or a plate of pasta with a choice of two sauces fr...

  2. Synthetic cathinone abuse

    Directory of Open Access Journals (Sweden)

    Capriola M

    2013-07-01

    Full Text Available Michael Capriola Thomasville Medical Center, Thomasville, NC, USA Abstract: The abuse of synthetic cathinones, widely known as bath salts, has been increasing since the mid-2000s. These substances are derivatives of the naturally occurring compound cathinone, which is the primary psychoactive component of khat. The toxicity of synthetic cathinones includes significant sympathomimetic effects, as well as psychosis, agitation, aggression, and sometimes violent and bizarre behavior. Mephedrone and methylenedioxypyrovalerone are currently the predominantly abused synthetic cathinones. Keywords: designer drugs/chemistry, street drugs/pharmacology, substance-related disorders/epidemiology, alkaloids/poisoning

  3. Synthetic Base Fluids

    Science.gov (United States)

    Brown, M.; Fotheringham, J. D.; Hoyes, T. J.; Mortier, R. M.; Orszulik, S. T.; Randles, S. J.; Stroud, P. M.

    The chemical nature and technology of the main synthetic lubricant base fluids is described, covering polyalphaolefins, alkylated aromatics, gas-to-liquid (GTL) base fluids, polybutenes, aliphatic diesters, polyolesters, polyalkylene glycols or PAGs and phosphate esters.Other synthetic lubricant base oils such as the silicones, borate esters, perfluoroethers and polyphenylene ethers are considered to have restricted applications due to either high cost or performance limitations and are not considered here.Each of the main synthetic base fluids is described for their chemical and physical properties, manufacture and production, their chemistry, key properties, applications and their implications when used in the environment.

  4. The fully Mobile City Government Project (MCity)

    DEFF Research Database (Denmark)

    Scholl, Hans; Fidel, Raya; Mai, Jens Erik

    2006-01-01

    The Fully Mobile City Government Project, also known as MCity, is an interdisciplinary research project on the premises, requirements, and effects of fully mobile, wirelessly connected applications (FWMC). The project will develop an analytical framework for interpreting the interaction...

  5. Analysis of Synthetic Polymers.

    Science.gov (United States)

    Smith, Charles G.; And Others

    1989-01-01

    Reviews techniques for the characterization and analysis of synthetic polymers, copolymers, and blends. Includes techniques for structure determination, separation, and quantitation of additives and residual monomers; determination of molecular weight; and the study of thermal properties including degradation mechanisms. (MVL)

  6. Equipment for the Characterization of Synthetic Bio-hybrid Polymers and Micellar Nanoparticles for Stimuli Responsive Materials

    Science.gov (United States)

    2015-02-08

    reactions. These materials couple together synthetic polymers with biopolymers including DNA, peptides and proteins. The project therefore requires a... Synthetic Bio-hybrid Polymers and Micellar Nanoparticles for Stimuli Responsive Materials. The views, opinions and/or findings contained in this...this instrument in terms of fully characterizing biomolecule interactions occurring at the interface of semi- synthetic biopolymer -based nano materials

  7. The Synthetic Cannabinoids Phenomenon.

    Science.gov (United States)

    Karila, Laurent; Benyamina, Amine; Blecha, Lisa; Cottencin, Olivier; Billieux, Joël

    2016-01-01

    « Spice » is generally used to describe the diverse types of herbal blends that encompass synthetic cannabinoids on the market. The emergence of smokable herbal products containing synthetic cannabinoids, which mimic the effects of cannabis, appears to become increasingly popular, in the new psychoactive substances landscape. In 2014, the existence of 134 different types of synthetic cannabinoids were reported by the European Union Early Warning System. These drugs are mainly sold online as an alternative to controlled and regulated psychoactive substances. They appear to have a life cycle of about 1-2 years before being replaced by a next wave of products. Legislation controlling these designer drugs has been introduced in many countries with the objective to limit the spread of existing drugs and control potential new analogs. The majority of the synthetic cannabinoids are full agonists at the CB1 receptor and do not contain tobacco or cannabis. They are becoming increasingly popular in adolescents, students and clubbers as an abused substance. Relatively high incidence of adverse effects associated with synthetic cannabinoids use has been documented in the literature. Numerous fatalities linked with their use and abuse have been reported. In this paper, we will review the available data regarding the use and effects of synthetic cannabinoids in humans in order to highlight their impact on public health. To reach this objective, a literature search was performed on two representative databases (Pubmed, Google Scholar), the Erowid Center website (a US non-profit educational organization that provides information about psychoactive plants and chemicals), and various governmental websites. The terms used for the database search were: "synthetic cannabinoids", "spice", "new psychoactive substances", and/or "substance use disorder", and/or "adverse effects", and/or "fatalities". The search was limited to years 2005 to 2016 due to emerging scientific literature at

  8. Synthetic Biology: Applications in the Food Sector.

    Science.gov (United States)

    Tyagi, Ashish; Kumar, Ashwani; Aparna, S V; Mallappa, Rashmi H; Grover, Sunita; Batish, Virender Kumar

    2016-08-17

    Synthetic biology also termed as "genomic alchemy" represents a powerful area of science that is based on the convergence of biological sciences with systems engineering. It has been fittingly described as "moving from reading the genetic code to writing it" as it focuses on building, modeling, designing and fabricating novel biological systems using customized gene components that result in artificially created genetic circuitry. The scientifically compelling idea of the technological manipulation of life has been advocated since long time. Realization of this idea has gained momentum with development of high speed automation and the falling cost of gene sequencing and synthesis following the completion of the human genome project. Synthetic biology will certainly be instrumental in shaping the development of varying areas ranging from biomedicine, biopharmaceuticals, chemical production, food and dairy quality monitoring, packaging, and storage of food and dairy products, bioremediation and bioenergy production, etc. However, potential dangers of using synthetic life forms have to be acknowledged and adoption of policies by the scientific community to ensure safe practice while making important advancements in the ever expanding field of synthetic biology is to be fully supported and implemented.

  9. Raman spectrum of natural and synthetic stishovite

    Science.gov (United States)

    Hemley, R.J.; Mao, Ho-kwang; Chao, E.C.T.

    1986-01-01

    Raman spectra of natural and synthetic samples of stishovite have been measured with a micro-optical spectrometer system. These spectra have a pattern that is characteristic of rutile-structured oxides. The spectrum of synthetic stishovite is characterized by well-resolved bands at 231, 589, 753, and 967 cm-1, which are assigned as the B1g, Eg, A1g, and B2g fundamentals, respectively, of the first-order Raman spectrum of the ideal, ordered structure. Natural stishovite obtained from Meteor Crater, Arizona has a first-order Raman spectrum that is fully consistent with that of the synthetic material. The observed spectrum of the natural sample, however, is weaker and has bands in addition to those identified as fundamentals in the spectrum of the synthetic material. A broad band at ???475 cm-1 may be indicative of glass or contaminants derived from the extraction procedure. Alternatively, this band may arise from multiphonon scattering that is enhanced by poor crystallinity or structural disorder in the natural shocked sample. ?? 1986 Springer-Verlag.

  10. Synthetic guide star generation

    Science.gov (United States)

    Payne, Stephen A [Castro Valley, CA; Page, Ralph H [Castro Valley, CA; Ebbers, Christopher A [Livermore, CA; Beach, Raymond J [Livermore, CA

    2008-06-10

    A system for assisting in observing a celestial object and providing synthetic guide star generation. A lasing system provides radiation at a frequency at or near 938 nm and radiation at a frequency at or near 1583 nm. The lasing system includes a fiber laser operating between 880 nm and 960 nm and a fiber laser operating between 1524 nm and 1650 nm. A frequency-conversion system mixes the radiation and generates light at a frequency at or near 589 nm. A system directs the light at a frequency at or near 589 nm toward the celestial object and provides synthetic guide star generation.

  11. A Digital Data Processor for Synthetic Aperture Radar

    NARCIS (Netherlands)

    Vlothuizen, W.J.; Medenblik, H.J.W.

    2007-01-01

    This paper presents a Digital Data Processor (DDP) for Synthetic Aperture Radar (SAR). The DDP captures SAR data at a 1 GHz sample rate and processes data at 350 MB/s. Data reduction is performed by a digital down converter, programmable decimating filter and a fully programmable presummer. The tota

  12. Highly immunogenic and fully synthetic peptide-carrier constructs targetting GnRH

    DEFF Research Database (Denmark)

    Beekman, N.J.C.M.; Schaaper, W.M.M.; Turkstra, J.A.;

    1999-01-01

    using a tandem GnRH peptide as a branched polylysine construct, a lipo-thioester, a lipo-amide or a KLH conjugate in CFA, and the lipoamide peptide in an immuno-stimulating complex (ISCOM). We found the lipo-thioester and the branched polylysine constructs to be the most effective carrier molecules...... for the induction of antibodies against GnRH and immunocastration of pigs....

  13. Factors affecting T cell responses induced by fully synthetic glyco-gold-nanoparticles

    Science.gov (United States)

    Fallarini, Silvia; Paoletti, Tiziana; Battaglini, Carolina Orsi; Ronchi, Paolo; Lay, Luigi; Bonomi, Renato; Jha, Satadru; Mancin, Fabrizio; Scrimin, Paolo; Lombardi, Grazia

    2012-12-01

    We have synthesized and characterized nearly monodisperse and highly pure gold nanoparticles (2 and 5 nm) coated with non-immunoactive mono- and disaccharides, modelled after the capsular polysaccharide of serogroup A of the Neisseria meningitidis bacterium. We have used them to test their ability to induce immune cell responses as a consequence of their multivalency. The results indicate that they are indeed immunoactive and that immunoactivity is strongly dependent on size, and larger, 5 nm nanoparticles perform far better than smaller, 2 nm ones. Immune response (activation of macrophages) initiates with the whole nanoparticle recognition by the surface of antigen-presenting cells, independent of the saccharide oligomerization (or charge) on the nanoparticle surface. The induction of T cell proliferation and the increase of IL-2 levels, a consequence of the expression of MHC II involved in antigen presentation, require the presence of a disaccharide on the nanoparticle, not just a monosaccharide. A possible explanation is that, at this stage, the saccharides are detached from the gold surface. These results may provide leads for designing new saccharide-based, nanoparticle-conjugate vaccines.We have synthesized and characterized nearly monodisperse and highly pure gold nanoparticles (2 and 5 nm) coated with non-immunoactive mono- and disaccharides, modelled after the capsular polysaccharide of serogroup A of the Neisseria meningitidis bacterium. We have used them to test their ability to induce immune cell responses as a consequence of their multivalency. The results indicate that they are indeed immunoactive and that immunoactivity is strongly dependent on size, and larger, 5 nm nanoparticles perform far better than smaller, 2 nm ones. Immune response (activation of macrophages) initiates with the whole nanoparticle recognition by the surface of antigen-presenting cells, independent of the saccharide oligomerization (or charge) on the nanoparticle surface. The induction of T cell proliferation and the increase of IL-2 levels, a consequence of the expression of MHC II involved in antigen presentation, require the presence of a disaccharide on the nanoparticle, not just a monosaccharide. A possible explanation is that, at this stage, the saccharides are detached from the gold surface. These results may provide leads for designing new saccharide-based, nanoparticle-conjugate vaccines. Electronic supplementary information (ESI) available: Fig. S1-S10 mentioned in the text related to the syntheses of nanosystems, nanoparticle characterization, and biological tests. See DOI: 10.1039/c2nr32338a

  14. Fully automated flexible docking of ligands into flexible synthetic receptors using forward and inverse docking strategies.

    Science.gov (United States)

    Kämper, Andreas; Apostolakis, Joannis; Rarey, Matthias; Marian, Christel M; Lengauer, Thomas

    2006-01-01

    The prediction of the structure of host-guest complexes is one of the most challenging problems in supramolecular chemistry. Usual procedures for docking of ligands into receptors do not take full conformational freedom of the host molecule into account. We describe and apply a new docking approach which performs a conformational sampling of the host and then sequentially docks the ligand into all receptor conformers using the incremental construction technique of the FlexX software platform. The applicability of this approach is validated on a set of host-guest complexes with known crystal structure. Moreover, we demonstrate that due to the interchangeability of the roles of host and guest, the docking process can be inverted. In this inverse docking mode, the receptor molecule is docked around its ligand. For all investigated test cases, the predicted structures are in good agreement with the experiment for both normal (forward) and inverse docking. Since the ligand is often smaller than the receptor and, thus, its conformational space is more restricted, the inverse docking approach leads in most cases to considerable speed-up. By having the choice between two alternative docking directions, the application range of the method is significantly extended. Finally, an important result of this study is the suitability of the simple energy function used here for structure prediction of complexes in organic media.

  15. Visual gene developer: a fully programmable bioinformatics software for synthetic gene optimization.

    Science.gov (United States)

    Jung, Sang-Kyu; McDonald, Karen

    2011-08-16

    Direct gene synthesis is becoming more popular owing to decreases in gene synthesis pricing. Compared with using natural genes, gene synthesis provides a good opportunity to optimize gene sequence for specific applications. In order to facilitate gene optimization, we have developed a stand-alone software called Visual Gene Developer. The software not only provides general functions for gene analysis and optimization along with an interactive user-friendly interface, but also includes unique features such as programming capability, dedicated mRNA secondary structure prediction, artificial neural network modeling, network & multi-threaded computing, and user-accessible programming modules. The software allows a user to analyze and optimize a sequence using main menu functions or specialized module windows. Alternatively, gene optimization can be initiated by designing a gene construct and configuring an optimization strategy. A user can choose several predefined or user-defined algorithms to design a complicated strategy. The software provides expandable functionality as platform software supporting module development using popular script languages such as VBScript and JScript in the software programming environment. Visual Gene Developer is useful for both researchers who want to quickly analyze and optimize genes, and those who are interested in developing and testing new algorithms in bioinformatics. The software is available for free download at http://www.visualgenedeveloper.net.

  16. Visual gene developer: a fully programmable bioinformatics software for synthetic gene optimization

    Directory of Open Access Journals (Sweden)

    McDonald Karen

    2011-08-01

    Full Text Available Abstract Background Direct gene synthesis is becoming more popular owing to decreases in gene synthesis pricing. Compared with using natural genes, gene synthesis provides a good opportunity to optimize gene sequence for specific applications. In order to facilitate gene optimization, we have developed a stand-alone software called Visual Gene Developer. Results The software not only provides general functions for gene analysis and optimization along with an interactive user-friendly interface, but also includes unique features such as programming capability, dedicated mRNA secondary structure prediction, artificial neural network modeling, network & multi-threaded computing, and user-accessible programming modules. The software allows a user to analyze and optimize a sequence using main menu functions or specialized module windows. Alternatively, gene optimization can be initiated by designing a gene construct and configuring an optimization strategy. A user can choose several predefined or user-defined algorithms to design a complicated strategy. The software provides expandable functionality as platform software supporting module development using popular script languages such as VBScript and JScript in the software programming environment. Conclusion Visual Gene Developer is useful for both researchers who want to quickly analyze and optimize genes, and those who are interested in developing and testing new algorithms in bioinformatics. The software is available for free download at http://www.visualgenedeveloper.net.

  17. Synthetic Aperture Radar Interferometry

    Science.gov (United States)

    Rosen, P. A.; Hensley, S.; Joughin, I. R.; Li, F.; Madsen, S. N.; Rodriguez, E.; Goldstein, R. M.

    1998-01-01

    Synthetic aperture radar interferometry is an imaging technique for measuring the topography of a surface, its changes over time, and other changes in the detailed characteristics of the surface. This paper reviews the techniques of interferometry, systems and limitations, and applications in a rapidly growing area of science and engineering.

  18. Biodegradable synthetic bone composites

    Science.gov (United States)

    Liu, Gao; Zhao, Dacheng; Saiz, Eduardo; Tomsia, Antoni P.

    2013-01-01

    The invention provides for a biodegradable synthetic bone composition comprising a biodegradable hydrogel polymer scaffold comprising a plurality of hydrolytically unstable linkages, and an inorganic component; such as a biodegradable poly(hydroxyethylmethacrylate)/hydroxyapatite (pHEMA/HA) hydrogel composite possessing mineral content approximately that of human bone.

  19. Synthetic growth reference charts

    NARCIS (Netherlands)

    Hermanussen, Michael; Stec, Karol; Aßmann, Christian; Meigen, Christof; Van Buuren, Stef

    2016-01-01

    Objectives: To reanalyze the between-population variance in height, weight, and body mass index (BMI), and to provide a globally applicable technique for generating synthetic growth reference charts. Methods: Using a baseline set of 196 female and 197 male growth studies published since 1831, common

  20. Synthetic studies towards bottromycin

    Directory of Open Access Journals (Sweden)

    Stefanie Ackermann

    2012-10-01

    Full Text Available Thio-Ugi reactions are described as an excellent synthetic tool for the synthesis of sterically highly hindered endothiopeptides. S-Methylation and subsequent amidine formation can be carried out in an inter- as well as in an intramolecular fashion. The intramolecular approach allows the synthesis of the bottromycin ring system in a straightforward manner.

  1. Properties of velocity field in the vicinity of synthetic jet generator

    Science.gov (United States)

    Strzelczyk, P.; Gil, P.

    2016-10-01

    The paper presents the results of experimental investigation of velocity field in the vicinity of synthetic jet actuator as a function of Stokes number and for constant Reynolds number. A constant temperature hot-wire anemometer with tungsten-platinum coated single wire probe used for the velocity measurements. Synthetic jet flow visualization was presented, especially process of vortex ring development. Synthetic jet velocity profiles were compared with a solution to fully-developed pipe flow with an oscillating pressure gradient.

  2. A self-consistent dynamo model for fully convective stars

    Science.gov (United States)

    Yadav, Rakesh Kumar; Christensen, Ulrich; Morin, Julien; Gastine, Thomas; Reiners, Ansgar; Poppenhaeger, Katja; Wolk, Scott J.

    2016-01-01

    The tachocline region inside the Sun, where the rigidly rotating radiative core meets the differentially rotating convection zone, is thought to be crucial for generating the Sun's magnetic field. Low-mass fully convective stars do not possess a tachocline and were originally expected to generate only weak small-scale magnetic fields. Observations, however, have painted a different picture of magnetism in rapidly-rotating fully convective stars: (1) Zeeman broadening measurements revealed average surface field of several kiloGauss (kG), which is similar to the typical field strength found in sunspots. (2) Zeeman-Doppler-Imaging (ZDI) technique discovered large-scale magnetic fields with a morphology often similar to the Earth's dipole-dominated field. (3) Comparison of Zeeman broadening and ZDI results showed that more than 80% of the magnetic flux resides at small scales. So far, theoretical and computer simulation efforts have not been able to reproduce these features simultaneously. Here we present a self-consistent global model of magnetic field generation in low-mass fully convective stars. A distributed dynamo working in the model spontaneously produces a dipole-dominated surface magnetic field of the observed strength. The interaction of this field with the turbulent convection in outer layers shreds it, producing small-scale fields that carry most of the magnetic flux. The ZDI technique applied to synthetic spectropolarimetric data based on our model recovers most of the large-scale field. Our model simultaneously reproduces the morphology and magnitude of the large-scale field as well as the magnitude of the small-scale field observed on low-mass fully convective stars.

  3. Synthetic Plant Defense Elicitors

    Directory of Open Access Journals (Sweden)

    Yasemin eBektas

    2015-01-01

    Full Text Available To defend themselves against invading pathogens plants utilize a complex regulatory network that coordinates extensive transcriptional and metabolic reprogramming. Although many of the key players of this immunity-associated network are known, the details of its topology and dynamics are still poorly understood. As an alternative to forward and reverse genetic studies, chemical genetics-related approaches based on bioactive small molecules have gained substantial popularity in the analysis of biological pathways and networks. Use of such molecular probes can allow researchers to access biological space that was previously inaccessible to genetic analyses due to gene redundancy or lethality of mutations. Synthetic elicitors are small drug like molecules that induce plant defense responses, but are distinct from known natural elicitors of plant immunity. While the discovery of the some synthetic elicitors had already been reported in the 1970s, recent breakthroughs in combinatorial chemical synthesis now allow for inexpensive high-throughput screens for bioactive plant defense-inducing compounds. Along with powerful reverse genetics tools and resources available for model plants and crop systems, comprehensive collections of new synthetic elicitors will likely allow plant scientists to study the intricacies of plant defense signaling pathways and networks in an unparalleled fashion. As synthetic elicitors can protect crops from diseases, without the need to be directly toxic for pathogenic organisms, they may also serve as promising alternatives to conventional biocidal pesticides, which often are harmful for the environment, farmers and consumers. Here we are discussing various types of synthetic elicitors that have been used for studies on the plant immune system, their modes-of-action as well as their application in crop protection.

  4. Synthetic River Valleys

    Science.gov (United States)

    Brown, R.; Pasternack, G. B.

    2011-12-01

    The description of fluvial form has evolved from anecdotal descriptions to artistic renderings to 2D plots of cross section or longitudinal profiles and more recently 3D digital models. Synthetic river valleys, artificial 3D topographic models of river topography, have a plethora of potential applications in fluvial geomorphology, and the earth sciences in general, as well as in computer science and ecology. Synthetic river channels have existed implicitly since approximately the 1970s and can be simulated from a variety of approaches spanning the artistic and numerical. An objective method of synthesizing 3D stream topography based on reach scale attributes would be valuable for sizing 3D flumes in the physical and numerical realms, as initial input topography for morphodynamic models, stream restoration design, historical reconstruction, and mechanistic testing of interactions of channel geometric elements. Quite simply - simulation of synthetic channel geometry of prescribed conditions can allow systematic evaluation of the dominant relationships between river flow and geometry. A new model, the control curve method, is presented that uses hierarchically scaled parametric curves in over-lapping 2D planes to create synthetic river valleys. The approach is able to simulate 3D stream geometry from paired 2D descriptions and can allow experimental insight into form-process relationships in addition to visualizing past measurements of channel form that are limited to two dimension descriptions. Results are presented that illustrate the models ability to simulate fluvial topography representative of real world rivers as well as how channel geometric elements can be adjusted. The testing of synthetic river valleys would open up a wealth of knowledge as to why some 3D attributes of river channels are more prevalent than others as well as bridging the gap between the 2D descriptions that have dominated fluvial geomorphology the past century and modern, more complete, 3D

  5. Tropical Mangrove Mapping Using Fully-Polarimetric Radar Data

    Directory of Open Access Journals (Sweden)

    Bambang Trisasongko

    2009-09-01

    Full Text Available Although mangrove is one of important ecosystems in the world, it has been abused and exploited by human for various purposes. Monitoring mangrove is therefore required to maintain a balance between economy and conservation and provides up-to-date information for rehabilitation. Optical remote sensing data have delivered such information, however ever-changing atmospheric disturbance may significantly decrease thematic content. In this research, Synthetic Aperture Radar (SAR fully polarimetric data were evaluated to present an alternative for mangrove mapping. Assessment using three statistical trees was performed on both tonal and textural data. It was noticeable that textural data delivered fairly good improvement which reduced the error rate to around 5-6% at L-band. This suggests that insertion of textural data is more important than any information derived from decomposition algorithm.

  6. Optimization Algorithms for Fully Automatic Optimizing Cross-cut Saw

    Institute of Scientific and Technical Information of China (English)

    LI Xiaochun; DING Qingxin; ZHAO Honglin; SUN Guangbin; XI Jiaxing

    2010-01-01

    The optimization of boards by grades plays an important role in the production for cross cutting boards, and the outturn rate and utilization of boards are directly affected by the optimization results of boards by grades. At present, the OptiCut series fully automatic optimizing cross-cut saw(FAOCCS) from Germany Weinig Group occupies the main markets in the world, but no report about the relative theories on the optimization technology and its algorithms is available. There exist some disadvantages in woodworking machinery and equipment used for cross cutting boards in China, for example, low sawing precision, outturn rate of boards and productivity, and difficulty in making statistics on the sawing results. Three optimization modes are presented for the optimization algorithms for FAOCCS, namely, optimization of fixed length, optimization of finger-jointed lumber and mixed optimization. Mathematical models are then established for these three optimization modes, and the corresponding software for realizing the optimization is prepared. Finally, Synthetic evaluation on the established mathematical models is presented through three practical examples. The results of synthetic evaluation indicate that FAOCCS using the optimization modes may raise the outturn rate of boards approximately 8% and the productivity obviously, and allows accurate statistics on the cross cut products of boards. The mathematical models of above three optimization modes are useful for increasing the outturn rate and utilization ratio of boards.

  7. These Synthetic Times

    Institute of Scientific and Technical Information of China (English)

    KIT GILLET

    2008-01-01

    @@ Already slated to be one of the most important cultural events in the buildup to this summer's Olympic games, Synthetic Times-Media Art China 2008 will feature the works of more than 30 artists from around the world. Upwards of 40 media art installations will be exhibited in the National Art Museum of China alone, along with performances, workshops, presentations, and discussion panels focusing on the art works and the growth of media art as a discipline.

  8. Autonomy and Fear of Synthetic Biology: How Can Patients' Autonomy Be Enhanced in the Field of Synthetic Biology? A Qualitative Study with Stable Patients.

    Science.gov (United States)

    Rakic, Milenko; Wienand, Isabelle; Shaw, David; Nast, Rebecca; Elger, Bernice S

    2017-04-01

    We analyzed stable patients' views regarding synthetic biology in general, the medical application of synthetic biology, and their potential participation in trials of synthetic biology in particular. The aim of the study was to find out whether patients' views and preferences change after receiving more detailed information about synthetic biology and its clinical applications. The qualitative study was carried out with a purposive sample of 36 stable patients, who suffered from diabetes or gout. Interviews were transcribed verbatim, translated and fully anonymized. Thematic analysis was applied in order to examine stable patients' attitudes towards synthetic biology, its medical application, and their participation in trials. When patients were asked about synthetic biology in general, most of them were anxious that something uncontrollable could be created. After a concrete example of possible future treatment options, patients started to see synthetic biology in a more positive way. Our study constitutes an important first empirical insight into stable patients' views on synthetic biology and into the kind of fears triggered by the term "synthetic biology." Our results show that clear and concrete information can change patients' initial negative feelings towards synthetic biology. Information should thus be transmitted with great accuracy and transparency in order to reduce irrational fears of patients and to minimize the risk that researchers present facts too positively for the purposes of persuading patients to participate in clinical trials. Potential participants need to be adequately informed in order to be able to autonomously decide whether to participate in human subject research involving synthetic biology.

  9. Synthetic gases production

    Energy Technology Data Exchange (ETDEWEB)

    Mazaud, J.P.

    1996-06-01

    The natural gas or naphtha are the main constituents used for the production of synthetic gases. Several production ways of synthetic gases are industrially used as for example the natural gas or naphtha catalytic reforming, the selective oxidation of natural gas or heavy fuels and the coal oxy-vapo-gasification. The aim of this work is to study the different steps of production and treatment of the synthetic gases by the way of catalytic reforming. The first step is the desulfurization of the hydrocarbons feedstocks. The process used in industry is described. Then is realized the catalytic hydrocarbons reforming process. After having recalled some historical data on the catalytic reforming, the author gives the reaction kinetics and thermodynamics. The possible reforming catalysts, industrial equipments and furnaces designs are then exposed. The carbon dioxide is a compound easily obtained during the reforming reactions. It is a wasteful and harmful component which has to be extracted of the gaseous stream. The last step is then the gases de-carbonation. Two examples of natural gas or naphtha reforming reactions are at last given: the carbon monoxide conversion by steam and the carbon oxides reactions with hydrogen (methanization). (O.M.). 8 figs., 6 tabs.

  10. Synthetic biology in plastids.

    Science.gov (United States)

    Scharff, Lars B; Bock, Ralph

    2014-06-01

    Plastids (chloroplasts) harbor a small gene-dense genome that is amenable to genetic manipulation by transformation. During 1 billion years of evolution from the cyanobacterial endosymbiont to present-day chloroplasts, the plastid genome has undergone a dramatic size reduction, mainly as a result of gene losses and the large-scale transfer of genes to the nuclear genome. Thus the plastid genome can be regarded as a naturally evolved miniature genome, the gradual size reduction and compaction of which has provided a blueprint for the design of minimum genomes. Furthermore, because of the largely prokaryotic genome structure and gene expression machinery, the high transgene expression levels attainable in transgenic chloroplasts and the very low production costs in plant systems, the chloroplast lends itself to synthetic biology applications that are directed towards the efficient synthesis of green chemicals, biopharmaceuticals and other metabolites of commercial interest. This review describes recent progress with the engineering of plastid genomes with large constructs of foreign or synthetic DNA, and highlights the potential of the chloroplast as a model system in bottom-up and top-down synthetic biology approaches.

  11. 76 FR 36176 - Fully Developed Claim (Fully Developed Claims-Applications for Compensation, Pension, DIC, Death...

    Science.gov (United States)

    2011-06-21

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF VETERANS AFFAIRS Fully Developed Claim (Fully Developed Claims--Applications for Compensation, Pension, DIC, Death Pension, and/or Accrued Benefits); Correction AGENCY: Veterans Benefits Administration, Department...

  12. NEW RSW & Wall Medium Fully Tetrahedral Grid

    Data.gov (United States)

    National Aeronautics and Space Administration — New Medium Fully Tetrahedral RSW Grid with viscous wind tunnel wall at the root. This grid is for a node-based unstructured solver. Medium Tet: Quad Surface Faces= 0...

  13. NEW RSW & Wall Fine Fully Tetrahedral Grid

    Data.gov (United States)

    National Aeronautics and Space Administration — NEW RSW Fine Fully Tetrahedral Grid with Viscous Wind Tunnel wall at the root. This grid is for a node-based unstructured solver. Note that the CGNS file is very...

  14. A Moment Matching Approach for Generating Synthetic Data.

    Science.gov (United States)

    Bogle, Brittany Megan; Mehrotra, Sanjay

    2016-09-01

    Synthetic data are becoming increasingly important mechanisms for sharing data among collaborators and with the public. Multiple methods for the generation of synthetic data have been proposed, but many have short comings with respect to maintaining the statistical properties of the original data. We propose a new method for fully synthetic data generation that leverages linear and integer mathematical programming models in order to match the moments of the original data in the synthetic data. This method has no inherent disclosure risk and does not require parametric or distributional assumptions. We demonstrate this methodology using the Framingham Heart Study. Existing synthetic data methods that use chained equations were compared with our approach. We fit Cox proportional hazards, logistic regression, and nonparametric models to synthetic data and compared with models fitted to the original data. True coverage, the proportion of synthetic data parameter confidence intervals that include the original data's parameter estimate, was 100% for parametric models when up to four moments were matched, and consistently outperformed the chained equations approach. The area under the curve and accuracy of the nonparametric models trained on synthetic data marginally differed when tested on the full original data. Models were also trained on synthetic data and a partition of original data and were tested on a held-out portion of original data. Fourth-order moment matched synthetic data outperformed others with respect to fitted parametric models but did not always outperform other methods with fitted nonparametric models. No single synthetic data method consistently outperformed others when assessing the performance of nonparametric models. The performance of fourth-order moment matched synthetic data in fitting parametric models suggests its use in these cases. Our empirical results also suggest that the performance of synthetic data generation techniques, including the

  15. Automated fully-stressed design with NASTRAN

    Science.gov (United States)

    Wallerstein, D. V.; Haggenmacher, G. W.

    1976-01-01

    An automated strength sizing capability is described. The technique determines the distribution of material among the elements of a structural model. The sizing is based on either a fully stressed design or a scaled feasible fully stressed design. Results obtained from the application of the strength sizing to the structural sizing of a composite material wing box using material strength allowables are presented. These results demonstrate the rapid convergence of the structural sizes to a usable design.

  16. Opportunities in plant synthetic biology.

    Science.gov (United States)

    Cook, Charis; Martin, Lisa; Bastow, Ruth

    2014-05-01

    Synthetic biology is an emerging field uniting scientists from all disciplines with the aim of designing or re-designing biological processes. Initially, synthetic biology breakthroughs came from microbiology, chemistry, physics, computer science, materials science, mathematics, and engineering disciplines. A transition to multicellular systems is the next logical step for synthetic biologists and plants will provide an ideal platform for this new phase of research. This meeting report highlights some of the exciting plant synthetic biology projects, and tools and resources, presented and discussed at the 2013 GARNet workshop on plant synthetic biology.

  17. Synthetic cannabis and respiratory depression.

    Science.gov (United States)

    Jinwala, Felecia N; Gupta, Mayank

    2012-12-01

    In recent years, synthetic cannabis use has been increasing in appeal among adolescents, and its use is now at a 30 year peak among high school seniors. The constituents of synthetic cannabis are difficult to monitor, given the drug's easy accessibility. Currently, 40 U.S. states have banned the distribution and use of some known synthetic cannabinoids, and have included these drugs in the Schedule I category. The depressive respiratory effect in humans caused by synthetic cannabis inhalation has not been thoroughly investigated in the medical literature. We are the first to report, to our knowledge, two cases of self-reported synthetic cannabis use leading to respiratory depression and necessary intubation.

  18. Reliability Analysis of Production System of Fully-Mechanized Face Based on Output Statistic

    Institute of Scientific and Technical Information of China (English)

    CAI Qing-xiang; LI Nai-liang

    2005-01-01

    Production system of fully-mechanized face is a complicated system composed of human, machine and environment, meantime influenced by various random factors. Analyzing the reliability of system needs plentiful data by means of system faults statistic. Based on the viewpoint that shift output of fully-mechanized face is the result of various random factors' synthetical influence, the process of how to analyze its reliability was deduced by using probability theory, symbolic statistics theory and systematic reliability theory combined with the concrete case study in this paper. And it has been proved that this method is feasible and valuable.

  19. Biopolymers Versus Synthetic Polymers

    Directory of Open Access Journals (Sweden)

    Florentina Adriana Cziple

    2008-10-01

    Full Text Available This paper present an overview of important synthetic and natural polymers with emphasis on polymer structure, the chemistry of polymer formation. an introduction to polymer characterization. The biodegradation process can take place aerobically and anaerobically with or without the presence of light. These factors allow for biodegradation even in landfill conditions which are normally inconducive to any degradation. The sheeting used to make these packages differs significantly from other “degradable plastics” in the market as it does not attempt to replace the current popular materials but instead enhances them by rendering them biodegradable.

  20. CASH vs. SYNTHETIC CDOs

    Directory of Open Access Journals (Sweden)

    Silviu Eduard Dinca

    2015-12-01

    Full Text Available During the past few years, in the recent post-crisis aftermath, global asset managers are constantly searching new ways to optimize their investment portfolios while financial and banking institutions around the world are exploring new alternatives to better secure their financing and refinancing demands altogether with the enhancement of their risk management capabilities. We will exhibit herewith a comparison between the true-sale and synthetic CDO securitizations as financial markets-based funding, investment and risks mitigation techniques, highlighting certain key structuring and implementation specifics on each of them.

  1. Synthetic collective intelligence.

    Science.gov (United States)

    Solé, Ricard; Amor, Daniel R; Duran-Nebreda, Salva; Conde-Pueyo, Núria; Carbonell-Ballestero, Max; Montañez, Raúl

    2016-10-01

    Intelligent systems have emerged in our biosphere in different contexts and achieving different levels of complexity. The requirement of communication in a social context has been in all cases a determinant. The human brain, probably co-evolving with language, is an exceedingly successful example. Similarly, social insects complex collective decisions emerge from information exchanges between many agents. The difference is that such processing is obtained out of a limited individual cognitive power. Computational models and embodied versions using non-living systems, particularly involving robot swarms, have been used to explore the potentiality of collective intelligence. Here we suggest a novel approach to the problem grounded in the genetic engineering of unicellular systems, which can be modified in order to interact, store memories or adapt to external stimuli in collective ways. What we label as Synthetic Swarm Intelligence defines a parallel approach to the evolution of computation and swarm intelligence and allows to explore potential embodied scenarios for decision making at the microscale. Here, we consider several relevant examples of collective intelligence and their synthetic organism counterparts.

  2. Fully Distributed Cooperative Motion of Group Robots

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    This paper is focused on the fully distributed cooperative motion of group robots and proposes a new approach. Each robot has a local sensing ability and a simple action selection strategy. Computational complexity is decreased by the fully distributed architecture and the information insufficiency is solved by the interaction between the robots and the environment. Variable loop and random method are used to deal with the fluctuation and equity selection problem and the rapidity and reasonabiliiy are guaranteed. Some simulations have proved the effectiveness of the proposed approach.

  3. Optimality of a Fully Stressed Design

    Science.gov (United States)

    Patnaik, Surya N.; Hopkins, Dale A.

    1998-01-01

    For a truss a fully stressed state is reached and when all its members are utilized to their full strength capacity. Historically, engineers considered such a design optimum. But recently this optimality has been questioned, especially since the weight of the structure is not explicitly used in fully stressed design calculations. This paper examines optimality of the full stressed design (FSD) with analytical and graphical illustrations. Solutions for a set of examples obtained by using the FSD method and optimization methods numerically confirm the optimality of the FSD. The FSD, which can be obtained with a small amount of calculation, can be extended to displacement constraints and to nontruss-type structures.

  4. Tissue Harmonic Synthetic Aperture Imaging

    DEFF Research Database (Denmark)

    Rasmussen, Joachim

    The main purpose of this PhD project is to develop an ultrasonic method for tissue harmonic synthetic aperture imaging. The motivation is to advance the field of synthetic aperture imaging in ultrasound, which has shown great potentials in the clinic. Suggestions for synthetic aperture tissue...... system complexity compared to conventional synthetic aperture techniques. In this project, SASB is sought combined with a pulse inversion technique for 2nd harmonic tissue harmonic imaging. The advantages in tissue harmonic imaging (THI) are expected to further improve the image quality of SASB...... harmonic techniques have been made, but none of these methods have so far been applicable for in-vivo imaging. The basis of this project is a synthetic aperture technique known as synthetic aperture sequential beamforming (SASB). The technique utilizes a two step beamforming approach to drastically reduce...

  5. Synthetic biology and genetic causation.

    Science.gov (United States)

    Oftedal, Gry; Parkkinen, Veli-Pekka

    2013-06-01

    Synthetic biology research is often described in terms of programming cells through the introduction of synthetic genes. Genetic material is seemingly attributed with a high level of causal responsibility. We discuss genetic causation in synthetic biology and distinguish three gene concepts differing in their assumptions of genetic control. We argue that synthetic biology generally employs a difference-making approach to establishing genetic causes, and that this approach does not commit to a specific notion of genetic program or genetic control. Still, we suggest that a strong program concept of genetic material can be used as a successful heuristic in certain areas of synthetic biology. Its application requires control of causal context, and may stand in need of a modular decomposition of the target system. We relate different modularity concepts to the discussion of genetic causation and point to possible advantages of and important limitations to seeking modularity in synthetic biology systems. Copyright © 2013 Elsevier Ltd. All rights reserved.

  6. Space Synthetic Biology Project

    Science.gov (United States)

    Howard, David; Roman, Monsi; Mansell, James (Matt)

    2015-01-01

    Synthetic biology is an effort to make genetic engineering more useful by standardizing sections of genetic code. By standardizing genetic components, biological engineering will become much more similar to traditional fields of engineering, in which well-defined components and subsystems are readily available in markets. Specifications of the behavior of those components and subsystems can be used to model a system which incorporates them. Then, the behavior of the novel system can be simulated and optimized. Finally, the components and subsystems can be purchased and assembled to create the optimized system, which most often will exhibit behavior similar to that indicated by the model. The Space Synthetic Biology project began in 2012 as a multi-Center effort. The purpose of this project was to harness Synthetic Biology principals to enable NASA's missions. A central target for application was to Environmental Control & Life Support (ECLS). Engineers from NASA Marshall Space Flight Center's (MSFC's) ECLS Systems Development Branch (ES62) were brought into the project to contribute expertise in operational ECLS systems. Project lead scientists chose to pursue the development of bioelectrochemical technologies to spacecraft life support. Therefore, the ECLS element of the project became essentially an effort to develop a bioelectrochemical ECLS subsystem. Bioelectrochemical systems exploit the ability of many microorganisms to drive their metabolisms by direct or indirect utilization of electrical potential gradients. Whereas many microorganisms are capable of deriving the energy required for the processes of interest (such as carbon dioxide (CO2) fixation) from sunlight, it is believed that subsystems utilizing electrotrophs will exhibit smaller mass, volume, and power requirements than those that derive their energy from sunlight. In the first 2 years of the project, MSFC personnel conducted modeling, simulation, and conceptual design efforts to assist the

  7. Life after the synthetic cell

    DEFF Research Database (Denmark)

    Rasmussen, Steen

    2010-01-01

    Nature asked eight synthetic-biology experts about the implications for science and society of the “synthetic cell” made by the J. Craig Venter Institute (JCVI). The institute's team assembled, modified and implanted a synthesized genome into a DNA-free bacterial shell to make a self-replicating ......Nature asked eight synthetic-biology experts about the implications for science and society of the “synthetic cell” made by the J. Craig Venter Institute (JCVI). The institute's team assembled, modified and implanted a synthesized genome into a DNA-free bacterial shell to make a self...

  8. Synthetic biology and occupational risk.

    Science.gov (United States)

    Howard, John; Murashov, Vladimir; Schulte, Paul

    2017-03-01

    Synthetic biology is an emerging interdisciplinary field of biotechnology that involves applying the principles of engineering and chemical design to biological systems. Biosafety professionals have done an excellent job in addressing research laboratory safety as synthetic biology and gene editing have emerged from the larger field of biotechnology. Despite these efforts, risks posed by synthetic biology are of increasing concern as research procedures scale up to industrial processes in the larger bioeconomy. A greater number and variety of workers will be exposed to commercial synthetic biology risks in the future, including risks to a variety of workers from the use of lentiviral vectors as gene transfer devices. There is a need to review and enhance current protection measures in the field of synthetic biology, whether in experimental laboratories where new advances are being researched, in health care settings where treatments using viral vectors as gene delivery systems are increasingly being used, or in the industrial bioeconomy. Enhanced worker protection measures should include increased injury and illness surveillance of the synthetic biology workforce; proactive risk assessment and management of synthetic biology products; research on the relative effectiveness of extrinsic and intrinsic biocontainment methods; specific safety guidance for synthetic biology industrial processes; determination of appropriate medical mitigation measures for lentiviral vector exposure incidents; and greater awareness and involvement in synthetic biology safety by the general occupational safety and health community as well as by government occupational safety and health research and regulatory agencies.

  9. Life after the synthetic cell

    DEFF Research Database (Denmark)

    Rasmussen, Steen

    2010-01-01

    Nature asked eight synthetic-biology experts about the implications for science and society of the “synthetic cell” made by the J. Craig Venter Institute (JCVI). The institute's team assembled, modified and implanted a synthesized genome into a DNA-free bacterial shell to make a self-replicating ......Nature asked eight synthetic-biology experts about the implications for science and society of the “synthetic cell” made by the J. Craig Venter Institute (JCVI). The institute's team assembled, modified and implanted a synthesized genome into a DNA-free bacterial shell to make a self...

  10. Synthetic Aperture Ultrasound Imaging

    DEFF Research Database (Denmark)

    Jensen, Jørgen Arendt; Nikolov, Svetoslav; Gammelmark, Kim Løkke

    2006-01-01

    The paper describes the use of synthetic aperture (SA) imaging in medical ultrasound. SA imaging is a radical break with today's commercial systems, where the image is acquired sequentially one image line at a time. This puts a strict limit on the frame rate and the possibility of acquiring...... a sufficient amount of data for high precision flow estimation. These constrictions can be lifted by employing SA imaging. Here data is acquired simultaneously from all directions over a number of emissions, and the full image can be reconstructed from this data. The talk will demonstrate the many benefits...... of SA imaging. Due to the complete data set, it is possible to have both dynamic transmit and receive focusing to improve contrast and resolution. It is also possible to improve penetration depth by employing codes during ultrasound transmission. Data sets for vector flow imaging can be acquired using...

  11. Computational synthetic geometry

    CERN Document Server

    Bokowski, Jürgen

    1989-01-01

    Computational synthetic geometry deals with methods for realizing abstract geometric objects in concrete vector spaces. This research monograph considers a large class of problems from convexity and discrete geometry including constructing convex polytopes from simplicial complexes, vector geometries from incidence structures and hyperplane arrangements from oriented matroids. It turns out that algorithms for these constructions exist if and only if arbitrary polynomial equations are decidable with respect to the underlying field. Besides such complexity theorems a variety of symbolic algorithms are discussed, and the methods are applied to obtain new mathematical results on convex polytopes, projective configurations and the combinatorics of Grassmann varieties. Finally algebraic varieties characterizing matroids and oriented matroids are introduced providing a new basis for applying computer algebra methods in this field. The necessary background knowledge is reviewed briefly. The text is accessible to stud...

  12. Transionospheric synthetic aperture imaging

    CERN Document Server

    Gilman, Mikhail; Tsynkov, Semyon

    2017-01-01

    This landmark monograph presents the most recent mathematical developments in the analysis of ionospheric distortions of SAR images and offers innovative new strategies for their mitigation. As a prerequisite to addressing these topics, the book also discusses the radar ambiguity theory as it applies to synthetic aperture imaging and the propagation of radio waves through the ionospheric plasma, including the anisotropic and turbulent cases. In addition, it covers a host of related subjects, such as the mathematical modeling of extended radar targets (as opposed to point-wise targets) and the scattering of radio waves off those targets, as well as the theoretical analysis of the start-stop approximation, which is used routinely in SAR signal processing but often without proper justification. The mathematics in this volume is clean and rigorous – no assumptions are hidden or ambiguously stated. The resulting work is truly interdisciplinary, providing both a comprehensive and thorough exposition of the field,...

  13. Variation and Synthetic Speech

    CERN Document Server

    Miller, C; Massey, N; Miller, Corey; Karaali, Orhan; Massey, Noel

    1997-01-01

    We describe the approach to linguistic variation taken by the Motorola speech synthesizer. A pan-dialectal pronunciation dictionary is described, which serves as the training data for a neural network based letter-to-sound converter. Subsequent to dictionary retrieval or letter-to-sound generation, pronunciations are submitted a neural network based postlexical module. The postlexical module has been trained on aligned dictionary pronunciations and hand-labeled narrow phonetic transcriptions. This architecture permits the learning of individual postlexical variation, and can be retrained for each speaker whose voice is being modeled for synthesis. Learning variation in this way can result in greater naturalness for the synthetic speech that is produced by the system.

  14. Synthetic Aperture Compound Imaging

    DEFF Research Database (Denmark)

    Hansen, Jens Munk

    Medical ultrasound imaging is used for many purposes, e.g. for localizing and classifying cysts, lesions, and other processes. Almost any mass is first observed using B-mode imaging and later classified using e.g. color flow, strain, or attenuation imaging. It is therefore important that the B....... The method is investigated using simulations and through measurements using both phased array and convex array transducers. The images all show an improved contrast compared to images without compounding, and by construction, imaging using an improved frame rate is possible. Using a phased array transducer...... and the limiting factor is the amount of memory IO resources available. An equally high demand for memory throughput is found in the computer gaming industry, where a large part of the processing takes place on the graphics processing unit (GPU). Using the GPU, a framework for synthetic aperture imaging...

  15. Polarimetric synthetic aperture radar data and the complex Wishart distribution

    DEFF Research Database (Denmark)

    Nielsen, Allan Aasbjerg; Conradsen, Knut; Skriver, Henning

    2003-01-01

    When working with multi-look fully polarimetric synthetic aperture radar (SAR) data an appropriate way of representing the backscattered signal consists of the so-called covariance matrix. For each pixel this is a 3 by 3 Hermitian, positive definite matrix which follows a complex Wishart distribu......When working with multi-look fully polarimetric synthetic aperture radar (SAR) data an appropriate way of representing the backscattered signal consists of the so-called covariance matrix. For each pixel this is a 3 by 3 Hermitian, positive definite matrix which follows a complex Wishart...... distribution. Based on this distribution a test statistic for equality of two such matrices and an associated asymptotic probability for obtaining a smaller value of the test statistic are given and applied to segmentation, change detection and edge detection in polarimetric SAR data. In a case study EMISAR L...

  16. Parametrization of Fully Dressed Quark Propagator

    Institute of Scientific and Technical Information of China (English)

    MA Wei-Xing; ZHU Ji-Zhen; ZHOU Li-Juan; SHEN Peng-Nian; HU Zhao-Hui

    2005-01-01

    Based on an extensive study of the Dyson-Schwinger equations for a fully dressed quark propagator in the "rainbow" approximation, a parametrized form of the quark propagator is suggested. The corresponding quark selfform of the quark propagator proposed in this work describes a confining quark propagation, and is quite convenient to be used in any numerical calculations.

  17. Fully Integrated Biochip Platforms for Advanced Healthcare

    Directory of Open Access Journals (Sweden)

    Giovanni De Micheli

    2012-08-01

    Full Text Available Recent advances in microelectronics and biosensors are enabling developments of innovative biochips for advanced healthcare by providing fully integrated platforms for continuous monitoring of a large set of human disease biomarkers. Continuous monitoring of several human metabolites can be addressed by using fully integrated and minimally invasive devices located in the sub-cutis, typically in the peritoneal region. This extends the techniques of continuous monitoring of glucose currently being pursued with diabetic patients. However, several issues have to be considered in order to succeed in developing fully integrated and minimally invasive implantable devices. These innovative devices require a high-degree of integration, minimal invasive surgery, long-term biocompatibility, security and privacy in data transmission, high reliability, high reproducibility, high specificity, low detection limit and high sensitivity. Recent advances in the field have already proposed possible solutions for several of these issues. The aim of the present paper is to present a broad spectrum of recent results and to propose future directions of development in order to obtain fully implantable systems for the continuous monitoring of the human metabolism in advanced healthcare applications.

  18. Transport properties of fully screened Kondo models

    NARCIS (Netherlands)

    Hörig, Christoph B M; Mora, Christophe; Schuricht, Dirk

    2014-01-01

    We study the nonequilibrium transport properties of fully (exactly) screened Kondo quantum dots subject to a finite bias voltage or a finite temperature. First, we calculate the Fermi-liquid coefficients of the conductance for models with arbitrary spin, i.e., its leading behavior for small bias vol

  19. A Fully Automated Penumbra Segmentation Tool

    DEFF Research Database (Denmark)

    Nagenthiraja, Kartheeban; Ribe, Lars Riisgaard; Hougaard, Kristina Dupont

    2012-01-01

    salavageable tissue, quickly and accurately. We present a fully Automated Penumbra Segmentation (APS) algorithm using PWI and DWI images. We compare automatically generated PWI-DWI mismatch mask to mask outlined manually by experts, in 168 patients. Method: The algorithm initially identifies PWI lesions...

  20. Learner Perspectives on Fully Online Language Learning

    Science.gov (United States)

    Sun, Susan Y. H.

    2014-01-01

    This study builds on this author's 2011 article in which the author reflects on the pedagogical challenges and resultant changes made while teaching two fully online foreign language papers over a four-year period (Y. H. S. Sun (2011). Online language teaching: The pedagogical challenges. "Knowledge Management & E-Learning: An…

  1. SAR IMAGING SIMULATION OF HORIZONTAL FULLY TWO-DIMENSIONAL INTERNAL WAVES

    Institute of Scientific and Technical Information of China (English)

    SHEN Hui; HE Yi-Jun

    2006-01-01

    Based on the research of Lynett and Liu, a new horizontal fully two-dimensional internal wave propagation model with rotation effect was deduced, which can be used to simulate the characteristics of internal waves in a horizontal fully two-dimensional plane. By combining the imaging mechanism of Synthetic Aperture Radar(SAR), a simulation procedure was fatherly acquired, which can simulate the propagation characteristics of oceanic internal waves into SAR images. In order to evaluate the validity of the proposed simulation procedure, case studies are performed in South China Sea and results from simulation procedure are analyzed in detail. A very good consistency was found between the simulation results and satellite images. The proposed simulation procedure will be a possible foundation for the quantitative interpretation of internal waves from fully two-dimensional satellite images.

  2. Land cover classification comparisons among dual polarimetric, pseudo-fully polarimetric, and fully polarimetric SAR imagery

    Science.gov (United States)

    Mishra, Bhogendra; Susaki, Junichi

    2012-10-01

    In this paper, an approach is proposed that predicts fully polarimetric data from dual polarimetric data, and then applies selected supervised algorithm for dual polarimetric, pseudo-fully polarimetric and fully polarimetric dataset for the land cover classification comparison. A regression model has been developed to predict the complex variables of VV polarimetric component and amplitude independently using corresponding complex variables and amplitude in HH and HV bands. Support vector machine (SVM)is implemented for the land cover classification. Coherency matrix and amplitude were used for all dataset for the land cover classification independently.They are used to compare the data from different perspective. Finally, a post processing technique is implemented to remove the isolated pixels appeared as a noise. AVNIR-2 optical data over the same area is used as ground truth data to access the classification accuracy.The result from SVM indicates that the fully polarimetric mode gives the maximum classification accuracy followed by pseudo-fully polarimetric and dual polarimetric datasets using coherency matrix input for fully polarimetric image and pseudo-fully polarimetric image and covariance matrix input for dual polarimetric image. Additionally, it is observed that pseudo-fully polarimetric image with amplitude input does not show the significant improvement over dual polarimetric image with same input.

  3. Imaging with Synthetic Aperture Radar

    CERN Document Server

    Massonnet, Didier

    2008-01-01

    Describing a field that has been transformed by the recent availability of data from a new generation of space and airborne systems, the authors offer a synthetic geometrical approach to the description of synthetic aperture radar, one that addresses physicists, radar specialists, as well as experts in image processing.  

  4. Engineering Ecosystems and Synthetic Ecologies#

    OpenAIRE

    Mee, Michael T.; Wang, Harris H.

    2012-01-01

    Microbial ecosystems play an important role in nature. Engineering these systems for industrial, medical, or biotechnological purposes are important pursuits for synthetic biologists and biological engineers moving forward. Here, we provide a review of recent progress in engineering natural and synthetic microbial ecosystems. We highlight important forward engineering design principles, theoretical and quantitative models, new experimental and manipulation tools, and possible applications of ...

  5. Synthetic biology and metabolic engineering.

    Science.gov (United States)

    Stephanopoulos, Gregory

    2012-11-16

    Metabolic engineering emerged 20 years ago as the discipline occupied with the directed modification of metabolic pathways for the microbial synthesis of various products. As such, it deals with the engineering (design, construction, and optimization) of native as well as non-natural routes of product synthesis, aided in this task by the availability of synthetic DNA, the core enabling technology of synthetic biology. The two fields, however, only partially overlap in their interest in pathway engineering. While fabrication of biobricks, synthetic cells, genetic circuits, and nonlinear cell dynamics, along with pathway engineering, have occupied researchers in the field of synthetic biology, the sum total of these areas does not constitute a coherent definition of synthetic biology with a distinct intellectual foundation and well-defined areas of application. This paper reviews the origins of the two fields and advances two distinct paradigms for each of them: that of unit operations for metabolic engineering and electronic circuits for synthetic biology. In this context, metabolic engineering is about engineering cell factories for the biological manufacturing of chemical and pharmaceutical products, whereas the main focus of synthetic biology is fundamental biological research facilitated by the use of synthetic DNA and genetic circuits.

  6. Holographically Correcting Synthetic Aperture Aberrations.

    Science.gov (United States)

    1987-12-01

    Malacara (20:105-148). The synthetic aperture was aligned in accordance with the synthetic-aperture alignment technique of Gill (8:61-64). The...1987. 20. Malacara , Daniel, ed. Optical Shop Testing. New York: John Wiley & Sons, 1978. 21. Marciniak, Capt Michael. Tutorial Presentation of mV

  7. Synthetic peptides for antibody production

    NARCIS (Netherlands)

    Zegers, N.D.

    1995-01-01

    Synthetic peptides are useful tools for the generation of antibodies. The use of antibodies as specific reagents in inununochemical assays is widely applied. In this chapter, the application of synthetic peptides for the generation of antibodies is described. The different steps that lead to the uni

  8. Fully resolved simulations of particle sedimentation

    Science.gov (United States)

    Sierakowski, Adam; Wang, Yayun; Prosperetti, Andrea

    2014-11-01

    Progress in computational capabilities - and specifically in the realm of massively parallel architectures - render possible the simulation of fully resolved fluid-particle systems. This development will drastically improve physical understanding and modelling of these systems when the particle size is not negligible and their concentration appreciable. Using a newly developed GPU-centric implementation of the Physalis method for the solution of the incompressible Navier-Stokes equations in the presence of finite-sized spheres, we carry out fully resolved simulations of more than one thousand sedimenting spheres. We discuss the results of these simulations focusing on statistical aspects such as particle velocity fluctuations, particle pair distribution function, microstructure, and others. Supported by NSF Grant CBET 1335965.

  9. MHD power generation with fully ionized seed

    Energy Technology Data Exchange (ETDEWEB)

    Yamasaki, H.; Shioda, S.

    1977-01-01

    Recovery of power density in the regime of fully ionized seed has been demonstrated experimentally using an MHD disk generator with the effective Hall parameter up to 5.0 when the seed was fully ionized. The experiments were conducted with a shock-heated and potassium-seeded argon plasma under the following conditions: stagnation gas pressure = 0.92 atm, stagnation gas temperature = 2750 K, flow Mach number = 2.5, and seed fraction = 1.4 x 10/sup -5/. Measurements of electron-number density and spectroscopic observations of both potassium and argon lines confirmed that the recovery of power output was due to the reduction of ionization instability. This fact indicates that the successful operation of a disk generator utilizing nonequilibrium ionization seems to be possible and that the suppression of ionization instability can also provide higher adiabatic efficiency. Furthermore, the lower seed fraction offers technological advantages related to seed problems.

  10. Fully Adaptive Radar Modeling and Simulation Development

    Science.gov (United States)

    2017-04-01

    Organization (NATO) Sensors Electronics Technology (SET)-227 Panel on Cognitive Radar. The FAR M&S architecture developed in Phase I allows for...Air Force’s previously developed radar M&S tools. This report is organized as follows. In Chapter 3, we provide an overview of the FAR framework...AFRL-RY-WP-TR-2017-0074 FULLY ADAPTIVE RADAR MODELING AND SIMULATION DEVELOPMENT Kristine L. Bell and Anthony Kellems Metron, Inc

  11. Ecotoxicology of synthetic pyrethroids.

    Science.gov (United States)

    Maund, S J; Campbell, P J; Giddings, J M; Hamer, M J; Henry, K; Pilling, E D; Warinton, J S; Wheeler, J R

    2012-01-01

    In this chapter we review the ecotoxicology of the synthetic pyrethroids (SPs). SPs are potent, broad-spectrum insecticides. Their effects on a wide range of nontarget species have been broadly studied, and there is an extensive database available to evaluate their effects. SPs are highly toxic to fish and aquatic invertebrates in the laboratory, but effects in the field are mitigated by rapid dissipation and degradation. Due to their highly lipophilic nature, SPs partition extensively into sediments. Recent studies have shown that toxicity in sediment can be predicted on the basis of equilibrium partitioning, and whilst other factors can influence this, organic carbon content is a key determining variable. At present for SPs, there is no clear evidence for adverse population-relevant effects with an underlying endocrine mode of action. SPs have been studied intensively in aquatic field studies, and their effects under field conditions are mitigated from those measured in the laboratory by their rapid dissipation and degradation. Studies with a range of test systems have shown consistent aquatic field endpoints across a variety of geographies and trophic states. SPs are also highly toxic to bees and other nontarget arthropods in the laboratory. These effects are mitigated in the field through repellency and dissipation of residues, and recovery from any adverse effects tends to be rapid.

  12. Fully implicit kinetic modelling of collisional plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Mousseau, V.A.

    1996-05-01

    This dissertation describes a numerical technique, Matrix-Free Newton Krylov, for solving a simplified Vlasov-Fokker-Planck equation. This method is both deterministic and fully implicit, and may not have been a viable option before current developments in numerical methods. Results are presented that indicate the efficiency of the Matrix-Free Newton Krylov method for these fully-coupled, nonlinear integro-differential equations. The use and requirement for advanced differencing is also shown. To this end, implementations of Chang-Cooper differencing and flux limited Quadratic Upstream Interpolation for Convective Kinematics (QUICK) are presented. Results are given for a fully kinetic ion-electron problem with a self consistent electric field calculated from the ion and electron distribution functions. This numerical method, including advanced differencing, provides accurate solutions, which quickly converge on workstation class machines. It is demonstrated that efficient steady-state solutions can be achieved to the non-linear integro-differential equation, obtaining quadratic convergence, without incurring the large memory requirements of an integral operator. Model problems are presented which simulate plasma impinging on a plate with both high and low neutral particle recycling typical of a divertor in a Tokamak device. These model problems demonstrate the performance of the new solution method.

  13. Synthetic biology: lessons from the history of synthetic organic chemistry.

    Science.gov (United States)

    Yeh, Brian J; Lim, Wendell A

    2007-09-01

    The mid-nineteenth century saw the development of a radical new direction in chemistry: instead of simply analyzing existing molecules, chemists began to synthesize them--including molecules that did not exist in nature. The combination of this new synthetic approach with more traditional analytical approaches revolutionized chemistry, leading to a deep understanding of the fundamental principles of chemical structure and reactivity and to the emergence of the modern pharmaceutical and chemical industries. The history of synthetic chemistry offers a possible roadmap for the development and impact of synthetic biology, a nascent field in which the goal is to build novel biological systems.

  14. A fully automated TerraSAR-X based flood service

    Science.gov (United States)

    Martinis, Sandro; Kersten, Jens; Twele, André

    2015-06-01

    In this paper, a fully automated processing chain for near real-time flood detection using high resolution TerraSAR-X Synthetic Aperture Radar (SAR) data is presented. The processing chain including SAR data pre-processing, computation and adaption of global auxiliary data, unsupervised initialization of the classification as well as post-classification refinement by using a fuzzy logic-based approach is automatically triggered after satellite data delivery. The dissemination of flood maps resulting from this service is performed through an online service which can be activated on-demand for emergency response purposes (i.e., when a flood situation evolves). The classification methodology is based on previous work of the authors but was substantially refined and extended for robustness and transferability to guarantee high classification accuracy under different environmental conditions and sensor configurations. With respect to accuracy and computational effort, experiments performed on a data set of 175 different TerraSAR-X scenes acquired during flooding all over the world with different sensor configurations confirm the robustness and effectiveness of the proposed flood mapping service. These promising results have been further confirmed by means of an in-depth validation performed for three study sites in Germany, Thailand, and Albania/Montenegro.

  15. Biofabrication and testing of a fully cellular nerve graft.

    Science.gov (United States)

    Owens, Christopher M; Marga, Francoise; Forgacs, Gabor; Heesch, Cheryl M

    2013-12-01

    Rupture of a nerve is a debilitating injury with devastating consequences for the individual's quality of life. The gold standard of repair is the use of an autologous graft to bridge the severed nerve ends. Such repair however involves risks due to secondary surgery at the donor site and may result in morbidity and infection. Thus the clinical approach to repair often involves non-cellular solutions, grafts composed of synthetic or natural materials. Here we report on a novel approach to biofabricate fully biological grafts composed exclusively of cells and cell secreted material. To reproducibly and reliably build such grafts of composite geometry we use bioprinting. We test our grafts in a rat sciatic nerve injury model for both motor and sensory function. In particular we compare the regenerative capacity of the biofabricated grafts with that of autologous grafts and grafts made of hollow collagen tubes by measuring the compound action potential (for motor function) and the change in mean arterial blood pressure as consequence of electrically eliciting the somatic pressor reflex. Our results provide evidence that bioprinting is a promising approach to nerve graft fabrication and as a consequence to nerve regeneration.

  16. Increasing situational awareness in DVE with advanced synthetic vision

    Science.gov (United States)

    Schafhitzel, T.; Hoyer, M.; Völschow, P.

    2013-05-01

    One of the major causes for hazardous situations in aviation is the lack of a pilot's situational awareness. Common causes for degraded situational awareness are Brownout and Whiteout situations, low level flights, and flights in DVE. In this paper, we propose Advanced Synthetic Vision (ASV), a modern situational awareness solution. ASV combines both Synthetic Vision and Enhanced Vision in order to provide the pilot most timeliness information without being restricted in the spatial coverage of the synthetic representation. The advantages to a common Enhanced Synthetic Vision System are the following: (1) ASV uses 3D ladar data instead of a 2D sensor. The 3D point cloud is classified in real-time to distinguish between ground, wires, poles and buildings; (2) the classified sensor data is fused with onboard data base contents like elevation or obstacles. The entire data fusion is performed in 3D, i.e. output is a merged 3D scenario instead of a blended 2D image. Once the sensor stopped recording due to occlusion, ASV switches to pure data base mode; (3) the merged data is passed to a 3D visualization module, which is fully configurable in order to support synthetic views on head down displays as well as more abstract augmented representations on helmet mounted displays; (4) the extendable design of ASV supports the graphical linking of functions like 3D landing aid, TAWS, or navigation aids.

  17. Spicing thing up: Synthetic cannabinoids

    Science.gov (United States)

    Spaderna, Max; Addy, Peter H; D’Souza, Deepak Cyril

    2013-01-01

    Rationale Recently, products containing synthetic cannabinoids, collectively referred to as Spice, are increasingly being used recreationally. Objectives The availability, acute subjective effects—including self-reports posted on Erowid—laboratory detection, addictive potential, and regulatory challenges of the Spice phenomenon are reviewed. Results Spice is sold under the guise of potpourri or incense. Unlike THC, the synthetic cannabinoids present in Spice are high-potency, high-efficacy, cannabinoid-receptor full agonists. Since standard urine toxicology does not test for the synthetic cannabinoids in Spice, it is often used by those who want to avoid detection of drug use. These compounds have not yet been subjected to rigorous testing in humans. Acute psychoactive effects include changes in mood, anxiety, perception, thinking, memory, and attention. Adverse effects include anxiety, agitation, panic, dysphoria, psychosis, and bizarre behavior. Psychosis outcomes associated with Spice provide additional data linking cannabinoids and psychosis. Adverse events necessitating intervention by Poison Control Centers, law enforcement, emergency responders, and hospitals are increasing. Despite statutes prohibiting the manufacture, distribution, and sale of Spice products, manufacturers are replacing banned compounds with newer synthetic cannabinoids that are not banned. Conclusions There is an urgent need for better research on the effects of synthetic cannabinoids to help clinicians manage adverse events and to better understand cannabinoid pharmacology in humans. The reported psychosis outcomes associated with synthetic cannabinoids contribute to the ongoing debate on the association between cannabinoids and psychosis. Finally, drug-detection tests for synthetic cannabinoids need to become clinically available. PMID:23836028

  18. Synthetic biology and personalized medicine.

    Science.gov (United States)

    Jain, K K

    2013-01-01

    Synthetic biology, application of synthetic chemistry to biology, is a broad term that covers the engineering of biological systems with structures and functions not found in nature to process information, manipulate chemicals, produce energy, maintain cell environment and enhance human health. Synthetic biology devices contribute not only to improve our understanding of disease mechanisms, but also provide novel diagnostic tools. Methods based on synthetic biology enable the design of novel strategies for the treatment of cancer, immune diseases metabolic disorders and infectious diseases as well as the production of cheap drugs. The potential of synthetic genome, using an expanded genetic code that is designed for specific drug synthesis as well as delivery and activation of the drug in vivo by a pathological signal, was already pointed out during a lecture delivered at Kuwait University in 2005. Of two approaches to synthetic biology, top-down and bottom-up, the latter is more relevant to the development of personalized medicines as it provides more flexibility in constructing a partially synthetic cell from basic building blocks for a desired task. Copyright © 2012 S. Karger AG, Basel.

  19. Synthetic biology: advancing biological frontiers by building synthetic systems

    Science.gov (United States)

    2012-01-01

    Advances in synthetic biology are contributing to diverse research areas, from basic biology to biomanufacturing and disease therapy. We discuss the theoretical foundation, applications, and potential of this emerging field. PMID:22348749

  20. Synthetic biology: advancing biological frontiers by building synthetic systems

    OpenAIRE

    Chen, Yvonne Yu-Hsuan; Galloway, Kate E; Smolke, Christina D.

    2012-01-01

    Advances in synthetic biology are contributing to diverse research areas, from basic biology to biomanufacturing and disease therapy. We discuss the theoretical foundation, applications, and potential of this emerging field.

  1. The Ethics of Synthetic Biology

    DEFF Research Database (Denmark)

    Christiansen, Andreas

    The dissertation analyses and discusses a number of ethical issues that have been raised in connection with the development of synthetic biology. Synthetic biology is a set of new techniques for DNA-level design and construction of living beings with useful properties. The dissertation especially......) popular responsesto them succeed, and whether the objections are ultimately persuasive.2. Given that synthetic biology is a new technology, there is a certain degree of uncertainty about its ultimate effects, and many perceive the technology as risky. I discuss two common approaches in risk regulation...

  2. Synthetic biology for therapeutic applications.

    Science.gov (United States)

    Abil, Zhanar; Xiong, Xiong; Zhao, Huimin

    2015-02-02

    Synthetic biology is a relatively new field with the key aim of designing and constructing biological systems with novel functionalities. Today, synthetic biology devices are making their first steps in contributing new solutions to a number of biomedical challenges, such as emerging bacterial antibiotic resistance and cancer therapy. This review discusses some synthetic biology approaches and applications that were recently used in disease mechanism investigation and disease modeling, drug discovery and production, as well as vaccine development and treatment of infectious diseases, cancer, and metabolic disorders.

  3. The Ethics of Synthetic Biology

    DEFF Research Database (Denmark)

    Christiansen, Andreas

    The dissertation analyses and discusses a number of ethical issues that have been raised in connection with the development of synthetic biology. Synthetic biology is a set of new techniques for DNA-level design and construction of living beings with useful properties. The dissertation especially......) popular responsesto them succeed, and whether the objections are ultimately persuasive.2. Given that synthetic biology is a new technology, there is a certain degree of uncertainty about its ultimate effects, and many perceive the technology as risky. I discuss two common approaches in risk regulation...

  4. SYNTHESIS AND CHARACTERIZATION OF FULLY SOLUBLE POLYPHENYLENEVINYLENE

    Institute of Scientific and Technical Information of China (English)

    Jiang-qing Pan; Zi-kuan Chen; Yang Xiao; Wei Huang

    2000-01-01

    Fully soluble poly[2-methoxy-5-(2'-ethylhexyl)-oxy)-p-phenylenevinylene] (MEH-PPV) was synthesized by the addition of molecular weight modifiers (chain stopper, free radical scavengers) to a polymerization system containing monomer, catalyst and a solvent. These PPV products synthesized in this work were characterized by IR, NMR, UV-visible spectroscopy and GPC. Results show that the Mw of polyphenylvinylene (PPV) can be controlled by the addition of chain stopper (benzyl bromide) and radical inhibitor (2,6-di-tert-butyl-4-methyl phenol). The polymerization mechanism in the presence of these additives was also discussed. A dual mechanism involving carbene for PPV polymerization was proposed.

  5. The fully differential top decay distribution

    Energy Technology Data Exchange (ETDEWEB)

    Aguilar-Saavedra, J.A. [Universidad de Granada, Departamento de Fisica Teorica y del Cosmos, Granada (Spain); Boudreau, J.; Mueller, J. [University of Pittsburgh, Department of Physics and Astronomy, Pittsburgh, PA (United States); Escobar, C. [CSIC-Universitat de Valencia, Instituto de Fisica Corpuscular, Paterna (Spain)

    2017-03-15

    We write down the four-dimensional fully differential decay distribution for the top quark decay t → Wb → lνb. We discuss how its eight physical parameters can be measured, either with a global fit or with the use of selected one-dimensional distributions and asymmetries. We give expressions for the top decay amplitudes for a general tbW interaction, and show how the untangled measurement of the two components of the fraction of longitudinal W bosons - those with b quark helicities of 1/2 and -1/2, respectively - could improve the precision of a global fit to the tbW vertex. (orig.)

  6. Fully Coupled FE Analyses of Buried Structures

    Directory of Open Access Journals (Sweden)

    James T. Baylot

    1994-01-01

    Full Text Available Current procedures for determining the response of buried structures to the effects of the detonation of buried high explosives recommend decoupling the free-field stress analysis from the structure response analysis. A fully coupled (explosive–soil structure finite element analysis procedure was developed so that the accuracies of current decoupling procedures could be evaluated. Comparisons of the results of analyses performed using this procedure with scale-model experiments indicate that this finite element procedure can be used to effectively evaluate the accuracies of the methods currently being used to decouple the free-field stress analysis from the structure response analysis.

  7. Behavior of a Fully-Looped Drainage Network and the Corresponding Dendritic Networks

    Directory of Open Access Journals (Sweden)

    Yongwon Seo

    2015-03-01

    Full Text Available Hydraulic and hydrologic analysis in urban catchments is typically accompanied by a number of uncertainties, such as a lack of required information for modeling purposes or complex loops inside a drainage network. In this article, Gibbs’ stochastic network model is utilized in order to achieve a dendritic network that corresponds to a fully looped network in terms of the peak of the runoff hydrograph at the outlet. A synthetic catchment with a drainage network composed of 8 × 8 grids is introduced to investigate the behavior of a fully looped network for a given rainfall event using the Storm Water Management Model. Dendritic networks are generated from the Gibbsian model for a given value of the parameter, β. The results showed that the shape of the hydrograph and the peak flow of a fully looped network are heavily dependent on the catchment slope. Moreover, the results showed that it is possible to find the corresponding dendritic networks generated by the Gibbsian model that match the fully looped network depending on the catchment slope in terms of peak flows. The results of this study imply the potential improvement of drainage network analysis providing a relationship between the catchment slope of a fully looped network and the corresponding dendritic network generated by the Gibbsian model.

  8. Synthetic biology: ethical ramifications 2009.

    Science.gov (United States)

    Rabinow, Paul; Bennett, Gaymon

    2009-12-01

    During 2007 and 2008 synthetic biology moved from the manifesto stage to research programs. As of 2009, synthetic biology is ramifying; to ramify means to produce differentiated trajectories from previous determinations. From its inception, most of the players in synthetic biology agreed on the need for (a) rationalized design and construction of new biological parts, devices, and systems as well as (b) the re-design of natural biological systems for specified purposes, and that (c) the versatility of designed biological systems makes them suitable to address such challenges as renewable energy, the production of inexpensive drugs, and environmental remediation, as well as providing a catalyst for further growth of biotechnology. What is understood by these goals, however, is diverse. Those assorted understandings are currently contributing to different ramifications of synthetic biology. The Berkeley Human Practices Lab, led by Paul Rabinow, is currently devoting its efforts to documenting and analyzing these ramifications as they emerge.

  9. Programming languages for synthetic biology.

    Science.gov (United States)

    Umesh, P; Naveen, F; Rao, Chanchala Uma Maheswara; Nair, Achuthsankar S

    2010-12-01

    In the backdrop of accelerated efforts for creating synthetic organisms, the nature and scope of an ideal programming language for scripting synthetic organism in-silico has been receiving increasing attention. A few programming languages for synthetic biology capable of defining, constructing, networking, editing and delivering genome scale models of cellular processes have been recently attempted. All these represent important points in a spectrum of possibilities. This paper introduces Kera, a state of the art programming language for synthetic biology which is arguably ahead of similar languages or tools such as GEC, Antimony and GenoCAD. Kera is a full-fledged object oriented programming language which is tempered by biopart rule library named Samhita which captures the knowledge regarding the interaction of genome components and catalytic molecules. Prominent feature of the language are demonstrated through a toy example and the road map for the future development of Kera is also presented.

  10. Is synthetic biology mechanical biology?

    Science.gov (United States)

    Holm, Sune

    2015-12-01

    A widespread and influential characterization of synthetic biology emphasizes that synthetic biology is the application of engineering principles to living systems. Furthermore, there is a strong tendency to express the engineering approach to organisms in terms of what seems to be an ontological claim: organisms are machines. In the paper I investigate the ontological and heuristic significance of the machine analogy in synthetic biology. I argue that the use of the machine analogy and the aim of producing rationally designed organisms does not necessarily imply a commitment to mechanical biology. The ideal of applying engineering principles to biology is best understood as expressing recognition of the machine-unlikeness of natural organisms and the limits of human cognition. The paper suggests an interpretation of the identification of organisms with machines in synthetic biology according to which it expresses a strategy for representing, understanding, and constructing living systems that are more machine-like than natural organisms.

  11. Synthetic Biology for Specialty Chemicals.

    Science.gov (United States)

    Markham, Kelly A; Alper, Hal S

    2015-01-01

    In this review, we address recent advances in the field of synthetic biology and describe how those tools have been applied to produce a wide variety of chemicals in microorganisms. Here we classify the expansion of the synthetic biology toolbox into three different categories based on their primary function in strain engineering-for design, for construction, and for optimization. Next, focusing on recent years, we look at how chemicals have been produced using these new synthetic biology tools. Advances in producing fuels are briefly described, followed by a more thorough treatment of commodity chemicals, specialty chemicals, pharmaceuticals, and nutraceuticals. Throughout this review, an emphasis is placed on how synthetic biology tools are applied to strain engineering. Finally, we discuss organism and host strain diversity and provide a future outlook in the field.

  12. Fully 3D GPU PET reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    Herraiz, J.L., E-mail: joaquin@nuclear.fis.ucm.es [Grupo de Fisica Nuclear, Departmento Fisica Atomica, Molecular y Nuclear, Universidad Complutense de Madrid (Spain); Espana, S. [Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, Boston, MA (United States); Cal-Gonzalez, J. [Grupo de Fisica Nuclear, Departmento Fisica Atomica, Molecular y Nuclear, Universidad Complutense de Madrid (Spain); Vaquero, J.J. [Departmento de Bioingenieria e Ingenieria Espacial, Universidad Carlos III, Madrid (Spain); Desco, M. [Departmento de Bioingenieria e Ingenieria Espacial, Universidad Carlos III, Madrid (Spain); Unidad de Medicina y Cirugia Experimental, Hospital General Universitario Gregorio Maranon, Madrid (Spain); Udias, J.M. [Grupo de Fisica Nuclear, Departmento Fisica Atomica, Molecular y Nuclear, Universidad Complutense de Madrid (Spain)

    2011-08-21

    Fully 3D iterative tomographic image reconstruction is computationally very demanding. Graphics Processing Unit (GPU) has been proposed for many years as potential accelerators in complex scientific problems, but it has not been used until the recent advances in the programmability of GPUs that the best available reconstruction codes have started to be implemented to be run on GPUs. This work presents a GPU-based fully 3D PET iterative reconstruction software. This new code may reconstruct sinogram data from several commercially available PET scanners. The most important and time-consuming parts of the code, the forward and backward projection operations, are based on an accurate model of the scanner obtained with the Monte Carlo code PeneloPET and they have been massively parallelized on the GPU. For the PET scanners considered, the GPU-based code is more than 70 times faster than a similar code running on a single core of a fast CPU, obtaining in both cases the same images. The code has been designed to be easily adapted to reconstruct sinograms from any other PET scanner, including scanner prototypes.

  13. Fully Equipped Dynamic Model of a Bus

    Directory of Open Access Journals (Sweden)

    I. Kowarska

    2014-01-01

    Full Text Available Nowadays, the time to market a new vehicle is crucial for every company as it is easier to meet the customers’ needs and expectations. However, designing a new vehicle is a long process which needs to take into account different performances. The most difficult is to predict a dynamic behavior of a vehicle especially when such a big vehicles as urban buses are considered. Therefore, there is a necessity to use a virtual model to investigate different performances. However, there is a lack of urban bus models that can fully reflect a dynamic behavior of the bus. This paper presents a fully equipped urban bus model which can be used to study a dynamic behavior of such vehicles. The model is based on innovative technique called cosimulation, which connects different modeling techniques (3D and 1D. Such a technique allows performing different analyses that require small deformations and large translations and rotations in shorter time and automatic way. The work has been carried out in a project EUREKA CHASING.

  14. Fully CMOS-compatible titanium nitride nanoantennas

    Energy Technology Data Exchange (ETDEWEB)

    Briggs, Justin A., E-mail: jabriggs@stanford.edu [Department of Applied Physics, Stanford University, 348 Via Pueblo Mall, Stanford, California 94305 (United States); Department of Materials Science and Engineering, Stanford University, 496 Lomita Mall, Stanford, California 94305 (United States); Naik, Gururaj V.; Baum, Brian K.; Dionne, Jennifer A. [Department of Materials Science and Engineering, Stanford University, 496 Lomita Mall, Stanford, California 94305 (United States); Petach, Trevor A.; Goldhaber-Gordon, David [Department of Physics, Stanford University, 382 Via Pueblo Mall, Stanford, California 94305 (United States)

    2016-02-01

    CMOS-compatible fabrication of plasmonic materials and devices will accelerate the development of integrated nanophotonics for information processing applications. Using low-temperature plasma-enhanced atomic layer deposition (PEALD), we develop a recipe for fully CMOS-compatible titanium nitride (TiN) that is plasmonic in the visible and near infrared. Films are grown on silicon, silicon dioxide, and epitaxially on magnesium oxide substrates. By optimizing the plasma exposure per growth cycle during PEALD, carbon and oxygen contamination are reduced, lowering undesirable loss. We use electron beam lithography to pattern TiN nanopillars with varying diameters on silicon in large-area arrays. In the first reported single-particle measurements on plasmonic TiN, we demonstrate size-tunable darkfield scattering spectroscopy in the visible and near infrared regimes. The optical properties of this CMOS-compatible material, combined with its high melting temperature and mechanical durability, comprise a step towards fully CMOS-integrated nanophotonic information processing.

  15. Fully CMOS-compatible titanium nitride nanoantennas

    Science.gov (United States)

    Briggs, Justin A.; Naik, Gururaj V.; Petach, Trevor A.; Baum, Brian K.; Goldhaber-Gordon, David; Dionne, Jennifer A.

    2016-02-01

    CMOS-compatible fabrication of plasmonic materials and devices will accelerate the development of integrated nanophotonics for information processing applications. Using low-temperature plasma-enhanced atomic layer deposition (PEALD), we develop a recipe for fully CMOS-compatible titanium nitride (TiN) that is plasmonic in the visible and near infrared. Films are grown on silicon, silicon dioxide, and epitaxially on magnesium oxide substrates. By optimizing the plasma exposure per growth cycle during PEALD, carbon and oxygen contamination are reduced, lowering undesirable loss. We use electron beam lithography to pattern TiN nanopillars with varying diameters on silicon in large-area arrays. In the first reported single-particle measurements on plasmonic TiN, we demonstrate size-tunable darkfield scattering spectroscopy in the visible and near infrared regimes. The optical properties of this CMOS-compatible material, combined with its high melting temperature and mechanical durability, comprise a step towards fully CMOS-integrated nanophotonic information processing.

  16. SYNTHETIC SLING FAILURE - EVALUATIONS & RECOMMENDATIONS

    Energy Technology Data Exchange (ETDEWEB)

    MACKEY TC; HENDERSON CS

    2009-10-26

    The information and evaluations provided in this report were compiled to address the recurring problem of synthetic sling failure. As safety is the number one priority in all work aspects, a solution must be devised to prevent accidents from occurring. A total of thirteen cases regarding synthetic sling failure were evaluated in order to determine their causes, effects, and preventative measures. From the collected data, it was found that all cases in which the synthetic sling contacted the edge of its load resulted in sling failure. It is required that adequate synthetic sling protection devices be used to protect slings in any lift where the sling comes in direct contact with the edge or corner of its load. However, there are no consensus codes or standards stating the type, material, or purpose of the type of protective device used to protect the sling from being cut. Numerous industry standards and codes provide vague descriptions on how to protect synthetic slings. Without a clear, concise statement of how to protect synthetic slings, it is common for inadequate materials and sling protection devices to be used in an attempt to meet the intent of these requirements. The use of an inadequate sling protection device is the main cause of synthetic sling failure in all researched cases. Commercial sling protection devices come in many shapes and sizes, and have a variety of names, as well as advertised uses. 'Abrasion pads' and 'wear protectors' are two different names for products with the same intended purpose. There is no distinguishable way to determine the extent of sling protection which these devices will provide, or what specific scenarios they are made for. This creates room for error in a field where error is unacceptable. This report provides a recommended action for hoisting and rigging activities which require synthetic slings to contact a load, as well as recommended changes to industry standards which will benefit overall

  17. Electron Capture in a Fully Ionized Plasma

    CERN Document Server

    Widom, A; Srivastava, Y N

    2014-01-01

    Properties of fully ionized water plasmas are discussed including plasma charge density oscillations and the screening of the Coulomb law especially in the dilute classical Debye regime. A kinetic model with two charged particle scattering events determines the transition rate per unit time for electron capture by a nucleus with the resulting nuclear transmutations. Two corrections to the recent Maiani et al. calculations are made: (i) The Debye screening length is only employed within its proper domain of validity. (ii) The WKB approximation employed by Maiani in the long De Broglie wave length limit is evidently invalid. We replace this incorrect approximation with mathematically rigorous Calogero inequalities in order to discuss the scattering wave functions. Having made these corrections, we find a verification for our previous results based on condensed matter electro-weak quantum field theory for nuclear transmutations in chemical batteries.

  18. A fully quantum model of Big Bang

    CERN Document Server

    Maydanyuk, Sergei P; Olkhovsky, Vladislav S

    2013-01-01

    In the paper the closed Friedmann-Robertson-Walker model with quantization in the presence of the positive cosmological constant and radiation is studied. For analysis of tunneling probability for birth of an asymptotically deSitter, inflationary Universe as a function of the radiation energy a new definition of a "free" wave propagating inside strong fields is proposed. On such a basis, tunneling boundary condition is corrected, penetrability and reflection concerning to the barrier are calculated in fully quantum stationary approach. For the first time non-zero interference between the incident and reflected waves has been taken into account which turns out to play important role inside cosmological potentials and could be explained by non-locality of barriers in quantum mechanics. Inside whole region of energy of radiation the tunneling probability for the birth of the inflationary Universe is found to be close to its value obtained in semiclassical approach. The reflection from the barrier is determined f...

  19. Fully Automatic Expression-Invariant Face Correspondence

    CERN Document Server

    Salazar, Augusto; Shu, Chang; Prieto, Flavio

    2012-01-01

    We consider the problem of computing accurate point-to-point correspondences among a set of human face scans with varying expressions. Our fully automatic approach does not require any manually placed markers on the scan. Instead, the approach learns the locations of a set of landmarks present in a database and uses this knowledge to automatically predict the locations of these landmarks on a newly available scan. The predicted landmarks are then used to compute point-to-point correspondences between a template model and the newly available scan. To accurately fit the expression of the template to the expression of the scan, we use as template a blendshape model. Our algorithm was tested on a database of human faces of different ethnic groups with strongly varying expressions. Experimental results show that the obtained point-to-point correspondence is both highly accurate and consistent for most of the tested 3D face models.

  20. Fully compressive tides in galaxy mergers

    CERN Document Server

    Renaud, Florent; Naab, Thorsten; Theis, Christian

    2009-01-01

    The disruptive effect of galactic tides is a textbook example of gravitational dynamics. However, depending on the shape of the potential, tides can also become fully compressive. When that is the case, they might trigger or strengthen the formation of galactic substructures (star clusters, tidal dwarf galaxies), instead of destroying them. We perform N-body simulations of interacting galaxies to quantify this effect. We demonstrate that tidal compression occurs repeatedly during a galaxy merger, independently of the specific choice of parameterization. With a model tailored to the Antennae galaxies, we show that the distribution of compressive tides matches the locations and timescales of observed substructures. After extending our study to a broad range of parameters, we conclude that neither the importance of the compressive tides (~15% of the stellar mass) nor their duration (~ 10 Myr) are strongly affected by changes in the progenitors' configurations and orbits. Moreover, we show that individual clumps ...

  1. Argentina to fully privatize state owned YPF

    Energy Technology Data Exchange (ETDEWEB)

    1992-10-05

    Argentina's Congress has voted to fully privatize state petroleum company Yacimientos Petroliferos Fiscales (YPF), a move the government expects to net at least $8 billion. Despite some political opposition, the vote was 119-10 in favor, with one abstention and opposition party members refusing to participate in the vote. Argentina's President Carlos Menem had threatened to authorize YPF privatization by decree if there was no quorum for a vote. YPF is responsible for 40% of Argentina's oil production. The country h as been self-sufficient in crude since 1982. Current production is 563,472 b/d, and proved reserves of oil and gas are valued at $7 billion.

  2. A novel fully integrated handheld gamma camera

    Energy Technology Data Exchange (ETDEWEB)

    Massari, R.; Ucci, A.; Campisi, C. [Biostructure and Bioimaging Institute (IBB), National Research Council of Italy (CNR), Rome (Italy); Scopinaro, F. [University of Rome “La Sapienza”, S. Andrea Hospital, Rome (Italy); Soluri, A., E-mail: alessandro.soluri@ibb.cnr.it [Biostructure and Bioimaging Institute (IBB), National Research Council of Italy (CNR), Rome (Italy)

    2016-10-01

    In this paper, we present an innovative, fully integrated handheld gamma camera, namely designed to gather in the same device the gamma ray detector with the display and the embedded computing system. The low power consumption allows the prototype to be battery operated. To be useful in radioguided surgery, an intraoperative gamma camera must be very easy to handle since it must be moved to find a suitable view. Consequently, we have developed the first prototype of a fully integrated, compact and lightweight gamma camera for radiopharmaceuticals fast imaging. The device can operate without cables across the sterile field, so it may be easily used in the operating theater for radioguided surgery. The prototype proposed consists of a Silicon Photomultiplier (SiPM) array coupled with a proprietary scintillation structure based on CsI(Tl) crystals. To read the SiPM output signals, we have developed a very low power readout electronics and a dedicated analog to digital conversion system. One of the most critical aspects we faced designing the prototype was the low power consumption, which is mandatory to develop a battery operated device. We have applied this detection device in the lymphoscintigraphy technique (sentinel lymph node mapping) comparing the results obtained with those of a commercial gamma camera (Philips SKYLight). The results obtained confirm a rapid response of the device and an adequate spatial resolution for the use in the scintigraphic imaging. This work confirms the feasibility of a small gamma camera with an integrated display. This device is designed for radioguided surgery and small organ imaging, but it could be easily combined into surgical navigation systems.

  3. Meeting Report: Synthetic Biology Jamboree for Undergraduates

    Science.gov (United States)

    Campbell, A. Malcolm

    2005-01-01

    The field of synthetic biology (the name is derived from an analogy to synthetic chemistry) has recognized itself as a "field" only since about 2002. Synthetic biology has gotten some high-profile attention recently, but most people are not aware the field even exists. Synthetic biologists apply engineering principles to genomic circuits to…

  4. Meeting Report: Synthetic Biology Jamboree for Undergraduates

    Science.gov (United States)

    Campbell, A. Malcolm

    2005-01-01

    The field of synthetic biology (the name is derived from an analogy to synthetic chemistry) has recognized itself as a "field" only since about 2002. Synthetic biology has gotten some high-profile attention recently, but most people are not aware the field even exists. Synthetic biologists apply engineering principles to genomic circuits to…

  5. Control theory meets synthetic biology.

    Science.gov (United States)

    Del Vecchio, Domitilla; Dy, Aaron J; Qian, Yili

    2016-07-01

    The past several years have witnessed an increased presence of control theoretic concepts in synthetic biology. This review presents an organized summary of how these control design concepts have been applied to tackle a variety of problems faced when building synthetic biomolecular circuits in living cells. In particular, we describe success stories that demonstrate how simple or more elaborate control design methods can be used to make the behaviour of synthetic genetic circuits within a single cell or across a cell population more reliable, predictable and robust to perturbations. The description especially highlights technical challenges that uniquely arise from the need to implement control designs within a new hardware setting, along with implemented or proposed solutions. Some engineering solutions employing complex feedback control schemes are also described, which, however, still require a deeper theoretical analysis of stability, performance and robustness properties. Overall, this paper should help synthetic biologists become familiar with feedback control concepts as they can be used in their application area. At the same time, it should provide some domain knowledge to control theorists who wish to enter the rising and exciting field of synthetic biology.

  6. Control theory meets synthetic biology

    Science.gov (United States)

    2016-01-01

    The past several years have witnessed an increased presence of control theoretic concepts in synthetic biology. This review presents an organized summary of how these control design concepts have been applied to tackle a variety of problems faced when building synthetic biomolecular circuits in living cells. In particular, we describe success stories that demonstrate how simple or more elaborate control design methods can be used to make the behaviour of synthetic genetic circuits within a single cell or across a cell population more reliable, predictable and robust to perturbations. The description especially highlights technical challenges that uniquely arise from the need to implement control designs within a new hardware setting, along with implemented or proposed solutions. Some engineering solutions employing complex feedback control schemes are also described, which, however, still require a deeper theoretical analysis of stability, performance and robustness properties. Overall, this paper should help synthetic biologists become familiar with feedback control concepts as they can be used in their application area. At the same time, it should provide some domain knowledge to control theorists who wish to enter the rising and exciting field of synthetic biology. PMID:27440256

  7. Engineering aspects of a fully mirrored endoscope

    Energy Technology Data Exchange (ETDEWEB)

    Terra, A., E-mail: a.terra@fz-juelich.de [Institute for Energy and Climate Research IEK-4 (Plasma Physics), Forschungszentrum Jülich GmbH, Assoc. EURATOM-FZJ, Member of the Trilateral Euregio Cluster, D-52425 Jülich (Germany); Huber, A.; Schweer, B.; Mertens, Ph. [Institute for Energy and Climate Research IEK-4 (Plasma Physics), Forschungszentrum Jülich GmbH, Assoc. EURATOM-FZJ, Member of the Trilateral Euregio Cluster, D-52425 Jülich (Germany); Arnoux, G.; Balshaw, N. [Euratom-CCFE Fusion Association, Culham Science Centre, Abingdon, OX14 3DB (United Kingdom); Brezinsek, S. [Institute for Energy and Climate Research IEK-4 (Plasma Physics), Forschungszentrum Jülich GmbH, Assoc. EURATOM-FZJ, Member of the Trilateral Euregio Cluster, D-52425 Jülich (Germany); Egner, S.; Hartl, M.; Kampf, D. [Kayser-Threde GmbH, D-81379 Munich (Germany); Klammer, J. [KRP-Mechatec Engineering GbR, D-85748 Garching (Germany); Lambertz, H.T. [Institute for Energy and Climate Research IEK-4 (Plasma Physics), Forschungszentrum Jülich GmbH, Assoc. EURATOM-FZJ, Member of the Trilateral Euregio Cluster, D-52425 Jülich (Germany); Morlock, C.; Murari, A. [EFDA-CSU, D-85748 Garching (Germany); Reindl, M. [KRP-Mechatec Engineering GbR, D-85748 Garching (Germany); Sanders, S. [Euratom-CCFE Fusion Association, Culham Science Centre, Abingdon, OX14 3DB (United Kingdom); Sergienko, G. [Institute for Energy and Climate Research IEK-4 (Plasma Physics), Forschungszentrum Jülich GmbH, Assoc. EURATOM-FZJ, Member of the Trilateral Euregio Cluster, D-52425 Jülich (Germany); Spencer, G. [Euratom-CCFE Fusion Association, Culham Science Centre, Abingdon, OX14 3DB (United Kingdom); and others

    2013-10-15

    Highlights: ► Replacement of JET diagnostics to match the new ITER-like Wall. ► The endoscope test ITER-like design with only mirror based optics. ► Withstanding and diagnostic capability during Plasma operation and disruptions. ► Engineering process from design to installation and procurement. -- Abstract: The development of optical diagnostics, like endoscopes, compatible with the ITER environment (metallic plasma facing components, neutron proof optics, etc.) is a challenge, but current tokamaks such as JET provide opportunities to test fully working concepts. This paper describes the engineering aspects of a fully mirrored endoscope that has recently been designed, procured and installed on JET. The system must operate in a very strict environment with high temperature, high magnetic fields up to B = 4 T and rapid field variations (∂B/∂t ∼ 100 T/s) that induce high stresses due to eddy currents in the front mirror assembly. It must be designed to withstand high mechanical loads especially during disruptions, which lead to acceleration of about 7 g at 14 Hz. For the JET endoscope, when the plasma thermal loading, direct and indirect, was added to the assumed disruption loads, the reserve factor, defined as a ratio of yield strength over summed up von Mises stresses, was close to 1 for the mirror components. To ensure reliable operation, several analyses were performed to evaluate the thermo-mechanical performance of the endoscope and a final validation was obtained from mechanical and thermal tests, before the system's final installation in May 2011. During the tests, stability of the field of view angle variation was kept below 1° despite the high thermal gradient on endoscope head (∂T/∂x ∼ 500 K/m). In parallel, to ensure long time operation and to prevent undesirable performance degradation, a shutter system was also implemented in order to reduce impurity deposition on in-vessel mirrors but also to allow in situ transmission

  8. Fully 3D refraction correction dosimetry system

    Science.gov (United States)

    Manjappa, Rakesh; Sharath Makki, S.; Kumar, Rajesh; Mohan Vasu, Ram; Kanhirodan, Rajan

    2016-02-01

    The irradiation of selective regions in a polymer gel dosimeter results in an increase in optical density and refractive index (RI) at those regions. An optical tomography-based dosimeter depends on rayline path through the dosimeter to estimate and reconstruct the dose distribution. The refraction of light passing through a dose region results in artefacts in the reconstructed images. These refraction errors are dependant on the scanning geometry and collection optics. We developed a fully 3D image reconstruction algorithm, algebraic reconstruction technique-refraction correction (ART-rc) that corrects for the refractive index mismatches present in a gel dosimeter scanner not only at the boundary, but also for any rayline refraction due to multiple dose regions inside the dosimeter. In this study, simulation and experimental studies have been carried out to reconstruct a 3D dose volume using 2D CCD measurements taken for various views. The study also focuses on the effectiveness of using different refractive-index matching media surrounding the gel dosimeter. Since the optical density is assumed to be low for a dosimeter, the filtered backprojection is routinely used for reconstruction. We carry out the reconstructions using conventional algebraic reconstruction (ART) and refractive index corrected ART (ART-rc) algorithms. The reconstructions based on FDK algorithm for cone-beam tomography has also been carried out for comparison. Line scanners and point detectors, are used to obtain reconstructions plane by plane. The rays passing through dose region with a RI mismatch does not reach the detector in the same plane depending on the angle of incidence and RI. In the fully 3D scanning setup using 2D array detectors, light rays that undergo refraction are still collected and hence can still be accounted for in the reconstruction algorithm. It is found that, for the central region of the dosimeter, the usable radius using ART-rc algorithm with water as RI matched

  9. Fully 3D refraction correction dosimetry system.

    Science.gov (United States)

    Manjappa, Rakesh; Makki, S Sharath; Kumar, Rajesh; Vasu, Ram Mohan; Kanhirodan, Rajan

    2016-02-21

    The irradiation of selective regions in a polymer gel dosimeter results in an increase in optical density and refractive index (RI) at those regions. An optical tomography-based dosimeter depends on rayline path through the dosimeter to estimate and reconstruct the dose distribution. The refraction of light passing through a dose region results in artefacts in the reconstructed images. These refraction errors are dependant on the scanning geometry and collection optics. We developed a fully 3D image reconstruction algorithm, algebraic reconstruction technique-refraction correction (ART-rc) that corrects for the refractive index mismatches present in a gel dosimeter scanner not only at the boundary, but also for any rayline refraction due to multiple dose regions inside the dosimeter. In this study, simulation and experimental studies have been carried out to reconstruct a 3D dose volume using 2D CCD measurements taken for various views. The study also focuses on the effectiveness of using different refractive-index matching media surrounding the gel dosimeter. Since the optical density is assumed to be low for a dosimeter, the filtered backprojection is routinely used for reconstruction. We carry out the reconstructions using conventional algebraic reconstruction (ART) and refractive index corrected ART (ART-rc) algorithms. The reconstructions based on FDK algorithm for cone-beam tomography has also been carried out for comparison. Line scanners and point detectors, are used to obtain reconstructions plane by plane. The rays passing through dose region with a RI mismatch does not reach the detector in the same plane depending on the angle of incidence and RI. In the fully 3D scanning setup using 2D array detectors, light rays that undergo refraction are still collected and hence can still be accounted for in the reconstruction algorithm. It is found that, for the central region of the dosimeter, the usable radius using ART-rc algorithm with water as RI matched

  10. Designer Drugs: A Synthetic Catastrophe

    Directory of Open Access Journals (Sweden)

    James Fratantonio

    2015-08-01

    Full Text Available Synthetic stimulants can cause hallucinations, aggressive behaviors, death and are sometimes legal. These substances are sold as plant food and bath salts that are "Not for Human Consumption", therefore skirting the 1986 Federal Analogue Act and giving a false pretense of safety. Studies have proved that these substances are toxic, have a high abuse potential, and are becoming extremely prevalent in the United States. This creates a dilemma for law enforcement agents, hospitals, and substance use disorder treatment centers. Urine Drug Testing is utilized as a clinical diagnostic tool in substance use disorder treatment centers, and the furious pace at which new synthetic stimulants are introduced to the black market are making the detection via urine increasingly difficult. This article will discuss the prevalence, pharmacology and difficulty developing laboratory assays to detect synthetic stimulants.

  11. Synthetic neurosteroids on brain protection

    Directory of Open Access Journals (Sweden)

    Mariana Rey

    2015-01-01

    Full Text Available Neurosteroids, like allopregnanolone and pregnanolone, are endogenous regulators of neuronal excitability. Inside the brain, they are highly selective and potent modulators of GABA A receptor activity. Their anticonvulsant, anesthetics and anxiolytic properties are useful for the treatments of several neurological and psychiatric disorders via reducing the risks of side effects obtained with the commercial drugs. The principal disadvantages of endogenous neurosteroids administration are their rapid metabolism and their low oral bioavailability. Synthetic steroids analogues with major stability or endogenous neurosteroids stimulation synthesis might constitute promising novel strategies for the treatment of several disorders. Numerous studies indicate that the 3α-hydroxyl configuration is the key for binding and activity, but modifications in the steroid nucleus may emphasize different pharmacophores. So far, several synthetic steroids have been developed with successful neurosteroid-like effects. In this work, we summarize the properties of various synthetic steroids probed in trials throughout the analysis of several neurosteroids-like actions.

  12. Synthetic neurosteroids on brain protection

    Institute of Scientific and Technical Information of China (English)

    Mariana Rey; Hctor Coirini

    2015-01-01

    Neurosteroids, like allopregnanolone and pregnanolone, are endogenous regulators of neuronal excitability. Inside the brain, they are highly selective and potent modulators of GABAA receptor activity. Their anticonvulsant, anesthetics and anxiolytic properties are useful for the treatments of several neurological and psychiatric disordersvia reducing the risks of side effects obtained with the commercial drugs. The principal disadvantages of endogenous neurosteroids adminis-tration are their rapid metabolism and their low oral bioavailability. Synthetic steroids analogues with major stability or endogenous neurosteroids stimulation synthesis might constitute prom-ising novel strategies for the treatment of several disorders. Numerous studies indicate that the 3α-hydroxyl conifguration is the key for binding and activity, but modiifcations in the steroid nucleus may emphasize different pharmacophores. So far, several synthetic steroids have been developed with successful neurosteroid-like effects. In this work, we summarize the properties of various synthetic steroids probed in trials throughout the analysis of several neurosteroids-like actions.

  13. Microfluidic Technologies for Synthetic Biology

    Directory of Open Access Journals (Sweden)

    Sung Kuk Lee

    2011-06-01

    Full Text Available Microfluidic technologies have shown powerful abilities for reducing cost, time, and labor, and at the same time, for increasing accuracy, throughput, and performance in the analysis of biological and biochemical samples compared with the conventional, macroscale instruments. Synthetic biology is an emerging field of biology and has drawn much attraction due to its potential to create novel, functional biological parts and systems for special purposes. Since it is believed that the development of synthetic biology can be accelerated through the use of microfluidic technology, in this review work we focus our discussion on the latest microfluidic technologies that can provide unprecedented means in synthetic biology for dynamic profiling of gene expression/regulation with high resolution, highly sensitive on-chip and off-chip detection of metabolites, and whole-cell analysis.

  14. Synthetic Melanin E-Ink.

    Science.gov (United States)

    Chang, Lingqian; Chen, Feng; Zhang, Xiaokang; Kuang, Tairong; Li, Mi; Hu, Jiaming; Shi, Junfeng; Lee, Ly James; Cheng, Huanyu; Li, Yiwen

    2017-05-17

    Extensive efforts have been devoted to the development of surfactant-free electronic ink (E-ink) with excellent display resolution for high-definition resolution display. Herein, we report the use of polydopamine-based synthetic melanin, a class of functional nanoparticles with similar chemical compositions and physical properties to those of naturally occurring melanin, as a new E-ink material. It was found that such E-ink displays could achieve ultrahigh resolution (>10 000 ppi) and low power consumption (operation voltage of only 1 V) in aqueous solutions. Interestingly, simple oxidation of synthetic melanin nanoparticles enables the generation of intrinsic fluorescence, allowing further development of fluorescent E-ink displays with nanoscale resolution. We describe these bioinspired materials in an initial proof-of-concept study and propose that synthetic melanin nanoparticles will be suitable for electronic nanoinks with a potential wide range of applications in molecular patterning and fluorescence bioimaging.

  15. Designer Drugs: A Synthetic Catastrophe.

    Science.gov (United States)

    Fratantonio, James; Andrade, Lawrence; Febo, Marcelo

    Synthetic stimulants can cause hallucinations, aggressive behaviors, death and are sometimes legal. These substances are sold as plant food and bath salts that are "Not for Human Consumption", therefore skirting the 1986 Federal Analogue Act and giving a false pretense of safety. Studies have proved that these substances are toxic, have a high abuse potential, and are becoming extremely prevalent in the United States. This creates a dilemma for law enforcement agents, hospitals, and substance use disorder treatment centers. Urine Drug Testing is utilized as a clinical diagnostic tool in substance use disorder treatment centers, and the furious pace at which new synthetic stimulants are introduced to the black market are making the detection via urine increasingly difficult. This article will discuss the prevalence, pharmacology and difficulty developing laboratory assays to detect synthetic stimulants.

  16. US Competitiveness in Synthetic Biology

    Science.gov (United States)

    2015-01-01

    Synthetic biology is an emerging technical field that aims to make biology easier to engineer; the field has applications in strategically important sectors for the US economy. While the United States currently leads in synthetic biology R&D, other nations are heavily investing in order to boost their economies, which will inevitably diminish the US leadership position. This outcome is not entirely negative—additional investments will expand markets—but it is critical that the US government take steps to remain competitive: There are applications from which the US population and economy may benefit; there are specific applications with importance for national defense; and US technical leadership will ensure that US experts have a leading role in synthetic biology governance, regulation, and oversight. Measures to increase competitiveness in S&T generally are broadly applicable for synthetic biology and should be pursued. However, the US government will also need to take action on fundamental issues that will affect the field's development, such as countering anti-GMO (genetically modified organism) sentiments and anti-GMO legislation. The United States should maintain its regulatory approach so that it is the product that is regulated, not the method used to create a product. At the same time, the United States needs to ensure that the regulatory framework is updated so that synthetic biology products do not fall into regulatory gaps. Finally, the United States needs to pay close attention to how synthetic biology applications may be governed internationally, such as through the Nagoya Protocol of the Convention on Biological Diversity, so that beneficial applications may be realized. PMID:26690379

  17. Synthetic biology as red herring.

    Science.gov (United States)

    Preston, Beth

    2013-12-01

    It has become commonplace to say that with the advent of technologies like synthetic biology the line between artifacts and living organisms, policed by metaphysicians since antiquity, is beginning to blur. But that line began to blur 10,000 years ago when plants and animals were first domesticated; and has been thoroughly blurred at least since agriculture became the dominant human subsistence pattern many millennia ago. Synthetic biology is ultimately only a late and unexceptional offshoot of this prehistoric development. From this perspective, then, synthetic biology is a red herring, distracting us from more thorough philosophical consideration of the most truly revolutionary human practice-agriculture. In the first section of this paper I will make this case with regard to ontology, arguing that synthetic biology crosses no ontological lines that were not crossed already in the Neolithic. In the second section I will construct a parallel case with regard to cognition, arguing that synthetic biology as biological engineering represents no cognitive advance over what was required for domestication and the new agricultural subsistence pattern it grounds. In the final section I will make the case with regard to human existence, arguing that synthetic biology, even if wildly successful, is not in a position to cause significant existential change in what it is to be human over and above the massive existential change caused by the transition to agriculture. I conclude that a longer historical perspective casts new light on some important issues in philosophy of technology and environmental philosophy. Copyright © 2013 Elsevier Ltd. All rights reserved.

  18. US Competitiveness in Synthetic Biology.

    Science.gov (United States)

    Gronvall, Gigi Kwik

    2015-01-01

    Synthetic biology is an emerging technical field that aims to make biology easier to engineer; the field has applications in strategically important sectors for the US economy. While the United States currently leads in synthetic biology R&D, other nations are heavily investing in order to boost their economies, which will inevitably diminish the US leadership position. This outcome is not entirely negative--additional investments will expand markets--but it is critical that the US government take steps to remain competitive: There are applications from which the US population and economy may benefit; there are specific applications with importance for national defense; and US technical leadership will ensure that US experts have a leading role in synthetic biology governance, regulation, and oversight. Measures to increase competitiveness in S&T generally are broadly applicable for synthetic biology and should be pursued. However, the US government will also need to take action on fundamental issues that will affect the field's development, such as countering anti-GMO (genetically modified organism) sentiments and anti-GMO legislation. The United States should maintain its regulatory approach so that it is the product that is regulated, not the method used to create a product. At the same time, the United States needs to ensure that the regulatory framework is updated so that synthetic biology products do not fall into regulatory gaps. Finally, the United States needs to pay close attention to how synthetic biology applications may be governed internationally, such as through the Nagoya Protocol of the Convention on Biological Diversity, so that beneficial applications may be realized.

  19. Fully Mechanically Controlled Automated Electron Microscopic Tomography

    Science.gov (United States)

    Liu, Jinxin; Li, Hongchang; Zhang, Lei; Rames, Matthew; Zhang, Meng; Yu, Yadong; Peng, Bo; Celis, César Díaz; Xu, April; Zou, Qin; Yang, Xu; Chen, Xuefeng; Ren, Gang

    2016-07-01

    Knowledge of three-dimensional (3D) structures of each individual particles of asymmetric and flexible proteins is essential in understanding those proteins’ functions; but their structures are difficult to determine. Electron tomography (ET) provides a tool for imaging a single and unique biological object from a series of tilted angles, but it is challenging to image a single protein for three-dimensional (3D) reconstruction due to the imperfect mechanical control capability of the specimen goniometer under both a medium to high magnification (approximately 50,000–160,000×) and an optimized beam coherence condition. Here, we report a fully mechanical control method for automating ET data acquisition without using beam tilt/shift processes. This method could reduce the accumulation of beam tilt/shift that used to compensate the error from the mechanical control, but downgraded the beam coherence. Our method was developed by minimizing the error of the target object center during the tilting process through a closed-loop proportional-integral (PI) control algorithm. The validations by both negative staining (NS) and cryo-electron microscopy (cryo-EM) suggest that this method has a comparable capability to other ET methods in tracking target proteins while maintaining optimized beam coherence conditions for imaging.

  20. Fully printed flexible carbon nanotube photodetectors

    Science.gov (United States)

    Zhang, Suoming; Cai, Le; Wang, Tongyu; Miao, Jinshui; Sepúlveda, Nelson; Wang, Chuan

    2017-03-01

    Here, we report fully printed flexible photodetectors based on single-wall carbon nanotubes and the study of their electrical characteristics under laser illumination. Due to the photothermal effect and the use of high purity semiconducting carbon nanotubes, the devices exhibit gate-voltage-dependent photoresponse with the positive photocurrent or semiconductor-like behavior (conductivity increases at elevated temperatures) under positive gate biases and the negative photocurrent or metal-like behavior (conductivity decreases at elevated temperatures) under negative gate biases. Mechanism for such photoresponse is attributed to the different temperature dependencies of carrier concentration and carrier mobility, which are two competing factors that ultimately determine the photothermal effect-based photoresponse. The photodetectors built on the polyimide substrate also exhibit superior mechanical compliance and stable photoresponse after thousands of bending cycles down to a curvature radius as small as 3 mm. Furthermore, due to the low thermal conductivity of the plastic substrate, the devices show up to 6.5 fold improvement in responsivity compared to the devices built on the silicon substrate. The results presented here provide a viable path to low cost and high performance flexible photodetectors fabricated entirely by the printing process.

  1. A fully covariant description of CMB anisotropies

    CERN Document Server

    Dunsby, P K S

    1997-01-01

    Starting from the exact non-linear description of matter and radiation, a fully covariant and gauge-invariant formula for the observed temperature anisotropy of the cosmic microwave background (CBR) radiation, expressed in terms of the electric ($E_{ab}$) and magnetic ($H_{ab}$) parts of the Weyl tensor, is obtained by integrating photon geodesics from last scattering to the point of observation today. This improves and extends earlier work by Russ et al where a similar formula was obtained by taking first order variations of the redshift. In the case of scalar (density) perturbations, $E_{ab}$ is related to the harmonic components of the gravitational potential $\\Phi_k$ and the usual dominant Sachs-Wolfe contribution $\\delta T_R/\\bar{T}_R\\sim\\Phi_k$ to the temperature anisotropy is recovered, together with contributions due to the time variation of the potential (Rees-Sciama effect), entropy and velocity perturbations at last scattering and a pressure suppression term important in low density universes. We a...

  2. Fully inkjet-printed microwave passive electronics

    KAUST Repository

    Mckerricher, Garret

    2017-01-30

    Fully inkjet-printed three-dimensional (3D) objects with integrated metal provide exciting possibilities for on-demand fabrication of radio frequency electronics such as inductors, capacitors, and filters. To date, there have been several reports of printed radio frequency components metallized via the use of plating solutions, sputtering, and low-conductivity pastes. These metallization techniques require rather complex fabrication, and do not provide an easily integrated or versatile process. This work utilizes a novel silver ink cured with a low-cost infrared lamp at only 80 °C, and achieves a high conductivity of 1×107 S m−1. By inkjet printing the infrared-cured silver together with a commercial 3D inkjet ultraviolet-cured acrylic dielectric, a multilayer process is demonstrated. By using a smoothing technique, both the conductive ink and dielectric provide surface roughness values of <500 nm. A radio frequency inductor and capacitor exhibit state-of-the-art quality factors of 8 and 20, respectively, and match well with electromagnetic simulations. These components are implemented in a lumped element radio frequency filter with an impressive insertion loss of 0.8 dB at 1 GHz, proving the utility of the process for sensitive radio frequency applications.

  3. Quantum Optimization of Fully Connected Spin Glasses

    Science.gov (United States)

    Venturelli, Davide; Mandrà, Salvatore; Knysh, Sergey; O'Gorman, Bryan; Biswas, Rupak; Smelyanskiy, Vadim

    2015-07-01

    Many NP-hard problems can be seen as the task of finding a ground state of a disordered highly connected Ising spin glass. If solutions are sought by means of quantum annealing, it is often necessary to represent those graphs in the annealer's hardware by means of the graph-minor embedding technique, generating a final Hamiltonian consisting of coupled chains of ferromagnetically bound spins, whose binding energy is a free parameter. In order to investigate the effect of embedding on problems of interest, the fully connected Sherrington-Kirkpatrick model with random ±1 couplings is programmed on the D-Wave TwoTM annealer using up to 270 qubits interacting on a Chimera-type graph. We present the best embedding prescriptions for encoding the Sherrington-Kirkpatrick problem in the Chimera graph. The results indicate that the optimal choice of embedding parameters could be associated with the emergence of the spin-glass phase of the embedded problem, whose presence was previously uncertain. This optimal parameter setting allows the performance of the quantum annealer to compete with (and potentially outperform, in the absence of analog control errors) optimized simulated annealing algorithms.

  4. Quantum Optimization of Fully Connected Spin Glasses

    Directory of Open Access Journals (Sweden)

    Davide Venturelli

    2015-09-01

    Full Text Available Many NP-hard problems can be seen as the task of finding a ground state of a disordered highly connected Ising spin glass. If solutions are sought by means of quantum annealing, it is often necessary to represent those graphs in the annealer’s hardware by means of the graph-minor embedding technique, generating a final Hamiltonian consisting of coupled chains of ferromagnetically bound spins, whose binding energy is a free parameter. In order to investigate the effect of embedding on problems of interest, the fully connected Sherrington-Kirkpatrick model with random ±1 couplings is programmed on the D-Wave Two^{TM} annealer using up to 270 qubits interacting on a Chimera-type graph. We present the best embedding prescriptions for encoding the Sherrington-Kirkpatrick problem in the Chimera graph. The results indicate that the optimal choice of embedding parameters could be associated with the emergence of the spin-glass phase of the embedded problem, whose presence was previously uncertain. This optimal parameter setting allows the performance of the quantum annealer to compete with (and potentially outperform, in the absence of analog control errors optimized simulated annealing algorithms.

  5. Fully additive copper metallization on BCB

    Energy Technology Data Exchange (ETDEWEB)

    Stolle, T. [FhG-IZM Berlin (Germany); Schwencke, B.; Reichl, H.

    2000-07-01

    A fully additive copper metallization process on benzocyclobutene cyclotene trademark (BCB) has been investigated for application in MCM-D technology. The process consists of surface pretreatment of the BCB basic layer by reactive ion etching (RIE), spin-coating and photopatterning of an organic seed layer by broad-band I-line photolithography followed by developing and activation steps. The metallization of the seed patterns is performed by a 2-step process by means of electroless copper baths. A height of about 5 {mu}m selectively deposited copper can be achieved. The electrical conductivity of patterns is in the range of 80% - 85% of the bulk conductivity of pure copper. Adhesive strength tests during accelerated aging show good adhesion of copper to the BCB surface, which is influenced by RIE pretreatment, exposure dose and thermal load. Shear experiments performed with optimal treated 200 x 200 {mu}m bumps show shear forces > 150 cN. Design rules have to take into account the lateral growth of copper patterns, which is nearly equal to the vertical growth. Real spaces of {>=} 30 {mu}m between copper lines are possible. The process is considered as a low cost technology because of replacing of sputter technique, few process steps and waste reduction. (orig.)

  6. The first LHC sector is fully interconnected

    CERN Multimedia

    2006-01-01

    Sector 7-8 is the first sector of the LHC to become fully operational. All the magnets, cryogenic line, vacuum chambers and services are interconnected. The cool down of this sector can soon commence. LHC project leader Lyn Evans, the teams from CERN's AT/MCS, AT/VAC and AT/MEL groups, and the members of the IEG consortium celebrate the completion of the first LHC sector. The 10th of November was a red letter day for the LHC accelerator teams, marking the completion of the first sector of the machine. The magnets of sector 7-8, together with the cryogenic line, the vacuum chambers and the distribution feedboxes (DFBs) are now all completely interconnected. Sector 7-8 has thus been closed and is the first LHC sector to become operational. The interconnection work required several thousand electrical, cryogenic and insulating connections to be made on the 210 interfaces between the magnets in the arc, the 30 interfaces between the special magnets and the interfaces with the cryogenic line. 'This represent...

  7. Sequential Beamforming Synthetic Aperture Imaging

    DEFF Research Database (Denmark)

    Kortbek, Jacob; Jensen, Jørgen Arendt; Gammelmark, Kim Løkke

    2013-01-01

    Synthetic aperture sequential beamforming (SASB) is a novel technique which allows to implement synthetic aperture beamforming on a system with a restricted complexity, and without storing RF-data. The objective is to improve lateral resolution and obtain a more depth independent resolution...... and a range independent lateral resolution is obtained. The SASB method has been investigated using simulations in Field II and by off-line processing of data acquired with a commercial scanner. The lateral resolution increases with a decreasing F#. Grating lobes appear if F# 6 2 for a linear array with k-pitch...

  8. Design Automation in Synthetic Biology.

    Science.gov (United States)

    Appleton, Evan; Madsen, Curtis; Roehner, Nicholas; Densmore, Douglas

    2017-04-03

    Design automation refers to a category of software tools for designing systems that work together in a workflow for designing, building, testing, and analyzing systems with a target behavior. In synthetic biology, these tools are called bio-design automation (BDA) tools. In this review, we discuss the BDA tools areas-specify, design, build, test, and learn-and introduce the existing software tools designed to solve problems in these areas. We then detail the functionality of some of these tools and show how they can be used together to create the desired behavior of two types of modern synthetic genetic regulatory networks.

  9. Synthetic Phage for Tissue Regeneration

    Directory of Open Access Journals (Sweden)

    So Young Yoo

    2014-01-01

    Full Text Available Controlling structural organization and signaling motif display is of great importance to design the functional tissue regenerating materials. Synthetic phage, genetically engineered M13 bacteriophage has been recently introduced as novel tissue regeneration materials to display a high density of cell-signaling peptides on their major coat proteins for tissue regeneration purposes. Structural advantages of their long-rod shape and monodispersity can be taken together to construct nanofibrous scaffolds which support cell proliferation and differentiation as well as direct orientation of their growth in two or three dimensions. This review demonstrated how functional synthetic phage is designed and subsequently utilized for tissue regeneration that offers potential cell therapy.

  10. Synthetic biology and its promises

    Directory of Open Access Journals (Sweden)

    José Manuel De Cózar Escalante

    2016-12-01

    Full Text Available Synthetic biology is a new science and emerging technology, or rather a technoscience, which converges with others such as nanotechnology, information technology, robotics, artificial intelligence and neuroscience. All have common features that could have highly concerning social and environmental impacts. With its ambitious goals of controlling complexity, redesigning and creating new living entities, synthetic biology perfectly exemplifies the new bioeconomic reality. This requires expanding the focus of the discussion beyond the limited comparative analysis of risks and benefits, to address uncertainties, reassign responsibilities and initiate a thorough social assessment of what is at stake.

  11. Improving Synthetic Biology Communication: Recommended Practices for Visual Depiction and Digital Submission of Genetic Designs.

    Science.gov (United States)

    Hillson, Nathan J; Plahar, Hector A; Beal, Jacob; Prithviraj, Ranjini

    2016-06-17

    Research is communicated more effectively and reproducibly when articles depict genetic designs consistently and fully disclose the complete sequences of all reported constructs. ACS Synthetic Biology is now providing authors with updated guidance and piloting a new tool and publication workflow that facilitate compliance with these recommended practices and standards for visual representation and data exchange.

  12. The fully nonlinear stratified geostrophic adjustment problem

    Science.gov (United States)

    Coutino, Aaron; Stastna, Marek

    2017-01-01

    The study of the adjustment to equilibrium by a stratified fluid in a rotating reference frame is a classical problem in geophysical fluid dynamics. We consider the fully nonlinear, stratified adjustment problem from a numerical point of view. We present results of smoothed dam break simulations based on experiments in the published literature, with a focus on both the wave trains that propagate away from the nascent geostrophic state and the geostrophic state itself. We demonstrate that for Rossby numbers in excess of roughly 2 the wave train cannot be interpreted in terms of linear theory. This wave train consists of a leading solitary-like packet and a trailing tail of dispersive waves. However, it is found that the leading wave packet never completely separates from the trailing tail. Somewhat surprisingly, the inertial oscillations associated with the geostrophic state exhibit evidence of nonlinearity even when the Rossby number falls below 1. We vary the width of the initial disturbance and the rotation rate so as to keep the Rossby number fixed, and find that while the qualitative response remains consistent, the Froude number varies, and these variations are manifested in the form of the emanating wave train. For wider initial disturbances we find clear evidence of a wave train that initially propagates toward the near wall, reflects, and propagates away from the geostrophic state behind the leading wave train. We compare kinetic energy inside and outside of the geostrophic state, finding that for long times a Rossby number of around one-quarter yields an equal split between the two, with lower (higher) Rossby numbers yielding more energy in the geostrophic state (wave train). Finally we compare the energetics of the geostrophic state as the Rossby number varies, finding long-lived inertial oscillations in the majority of the cases and a general agreement with the past literature that employed either hydrostatic, shallow-water equation-based theory or

  13. Hydrocarbon characterization experiments in fully turbulent fires.

    Energy Technology Data Exchange (ETDEWEB)

    Ricks, Allen; Blanchat, Thomas K.

    2007-05-01

    As the capabilities of numerical simulations increase, decision makers are increasingly relying upon simulations rather than experiments to assess risks across a wide variety of accident scenarios including fires. There are still, however, many aspects of fires that are either not well understood or are difficult to treat from first principles due to the computational expense. For a simulation to be truly predictive and to provide decision makers with information which can be reliably used for risk assessment the remaining physical processes must be studied and suitable models developed for the effects of the physics. The model for the fuel evaporation rate in a liquid fuel pool fire is significant because in well-ventilated fires the evaporation rate largely controls the total heat release rate from the fire. A set of experiments are outlined in this report which will provide data for the development and validation of models for the fuel regression rates in liquid hydrocarbon fuel fires. The experiments will be performed on fires in the fully turbulent scale range (> 1 m diameter) and with a number of hydrocarbon fuels ranging from lightly sooting to heavily sooting. The importance of spectral absorption in the liquid fuels and the vapor dome above the pool will be investigated and the total heat flux to the pool surface will be measured. The importance of convection within the liquid fuel will be assessed by restricting large scale liquid motion in some tests. These data sets will provide a sound, experimentally proven basis for assessing how much of the liquid fuel needs to be modeled to enable a predictive simulation of a fuel fire given the couplings between evaporation of fuel from the pool and the heat release from the fire which drives the evaporation.

  14. Hierarchical structures in fully developed turbulence

    Science.gov (United States)

    Liu, Li

    Analysis of the probability density functions (PDFs) of the velocity increment dvl and of their deformation is used to reveal the statistical structure of the intermittent energy cascade dynamics of turbulence. By analyzing a series of turbulent data sets including that of an experiment of fully developed low temperature helium turbulent gas flow (Belin, Tabeling, & Willaime, Physica D 93, 52, 1996), of a three-dimensional isotropic Navier-Stokes simulation with a resolution of 2563 (Cao, Chen, & She, Phys. Rev. Lett. 76, 3711, 1996) and of a GOY shell model simulation (Leveque & She, Phys. Rev. E 55, 1997) of a very big sample size (up to 5 billions), the validity of the Hierarchical Structure model (She & Leveque, Phys. Rev. Lett. 72, 366, 1994) for the inertial-range is firmly demonstrated. Furthermore, it is shown that parameters in the Hierarchical Structure model can be reliably measured and used to characterize the cascade process. The physical interpretations of the parameters then allow to describe differential changes in different turbulent systems so as to address non-universal features of turbulent systems. It is proposed that the above study provides a framework for the study of non-homogeneous turbulence. A convergence study of moments and scaling exponents is also carried out with detailed analysis of effects of finite statistical sample size. A quantity Pmin is introduced to characterize the resolution of a PDF, and hence the sample size. The fact that any reported scaling exponent depends on the PDF resolution suggests that the validation (or rejection) of a model of turbulence needs to carry out a resolution dependence analysis on its scaling prediction.

  15. Highly efficient fully transparent inverted OLEDs

    Science.gov (United States)

    Meyer, J.; Winkler, T.; Hamwi, S.; Schmale, S.; Kröger, M.; Görrn, P.; Johannes, H.-H.; Riedl, T.; Lang, E.; Becker, D.; Dobbertin, T.; Kowalsky, W.

    2007-09-01

    One of the unique selling propositions of OLEDs is their potential to realize highly transparent devices over the visible spectrum. This is because organic semiconductors provide a large Stokes-Shift and low intrinsic absorption losses. Hence, new areas of applications for displays and ambient lighting become accessible, for instance, the integration of OLEDs into the windshield or the ceiling of automobiles. The main challenge in the realization of fully transparent devices is the deposition of the top electrode. ITO is commonly used as transparent bottom anode in a conventional OLED. To obtain uniform light emission over the entire viewing angle and a low series resistance, a TCO such as ITO is desirable as top contact as well. However, sputter deposition of ITO on top of organic layers causes damage induced by high energetic particles and UV radiation. We have found an efficient process to protect the organic layers against the ITO rf magnetron deposition process of ITO for an inverted OLED (IOLED). The inverted structure allows the integration of OLEDs in more powerful n-channel transistors used in active matrix backplanes. Employing the green electrophosphorescent material Ir(ppy) 3 lead to IOLED with a current efficiency of 50 cd/A and power efficiency of 24 lm/W at 100 cd/m2. The average transmittance exceeds 80 % in the visible region. The on-set voltage for light emission is lower than 3 V. In addition, by vertical stacking we achieved a very high current efficiency of more than 70 cd/A for transparent IOLED.

  16. Optimizing Synthetic Aperture Compound Imaging

    DEFF Research Database (Denmark)

    Hansen, Jens Munk; Jensen, Jørgen Arendt

    2012-01-01

    Spatial compound images are constructed from synthetic aperture data acquired using a linear phased-array transducer. Compound images of wires, tissue, and cysts are created using a method, which allows both transmit and receive compounding without any loss in temporal resolution. Similarly to co...

  17. Stereoscopy in cinematographic synthetic imagery

    Science.gov (United States)

    Eisenmann, Jonathan; Parent, Rick

    2009-02-01

    In this paper we present experiments and results pertaining to the perception of depth in stereoscopic viewing of synthetic imagery. In computer animation, typical synthetic imagery is highly textured and uses stylized illumination of abstracted material models by abstracted light source models. While there have been numerous studies concerning stereoscopic capabilities, conventions for staging and cinematography in stereoscopic movies have not yet been well-established. Our long-term goal is to measure the effectiveness of various cinematography techniques on the human visual system in a theatrical viewing environment. We would like to identify the elements of stereoscopic cinema that are important in terms of enhancing the viewer's understanding of a scene as well as providing guidelines for the cinematographer relating to storytelling. In these experiments we isolated stereoscopic effects by eliminating as many other visual cues as is reasonable. In particular, we aim to empirically determine what types of movement in synthetic imagery affect the perceptual depth sensing capabilities of our viewers. Using synthetic imagery, we created several viewing scenarios in which the viewer is asked to locate a target object's depth in a simple environment. The scenarios were specifically designed to compare the effectiveness of stereo viewing, camera movement, and object motion in aiding depth perception. Data were collected showing the error between the choice of the user and the actual depth value, and patterns were identified that relate the test variables to the viewer's perceptual depth accuracy in our theatrical viewing environment.

  18. Synthetic Biological Engineering of Photosynthesis

    Science.gov (United States)

    2015-11-16

    photosynthesis into artificial metabolic pathways. During the course of the granting period, we also made significant progress on understanding the...compartmentalization of carbon fixation and flux in relationship to photosynthesis and obtained 1. REPORT DATE (DD-MM-YYYY) 4. TITLE AND SUBTITLE...2014 Approved for Public Release; Distribution Unlimited Final Report: Synthetic Biological Engineering of Photosynthesis The views, opinions and/or

  19. Digital 'faces' of synthetic biology.

    Science.gov (United States)

    Friedrich, Kathrin

    2013-06-01

    In silicio design plays a fundamental role in the endeavour to synthesise biological systems. In particular, computer-aided design software enables users to manage the complexity of biological entities that is connected to their construction and reconfiguration. The software's graphical user interface bridges the gap between the machine-readable data on the algorithmic subface of the computer and its human-amenable surface represented by standardised diagrammatic elements. Notations like the Systems Biology Graphical Notation (SBGN), together with interactive operations such as drag & drop, allow the user to visually design and simulate synthetic systems as 'bio-algorithmic signs'. Finally, the digital programming process should be extended to the wet lab to manufacture the designed synthetic biological systems. By exploring the different 'faces' of synthetic biology, I argue that in particular computer-aided design (CAD) is pushing the idea to automatically produce de novo objects. Multifaceted software processes serve mutually aesthetic, epistemic and performative purposes by simultaneously black-boxing and bridging different data sources, experimental operations and community-wide standards. So far, synthetic biology is mainly a product of digital media technologies that structurally mimic the epistemological challenge to take both qualitative as well as quantitative aspects of biological systems into account in order to understand and produce new and functional entities.

  20. Forthcoming Oversupply for Synthetic Ammonia

    Institute of Scientific and Technical Information of China (English)

    Zhang Zhantong

    2007-01-01

    @@ Stable output increase The total capacity of synthetic ammonia in China is 52.0 million t/a today.There are around 540 producers mainly located in Shandong, Shanxi, Hebei,Henan, Jiangsu and Sichuan provinces.The cumulative capacity in Shandong province ranks the highest, accounting for 14.6% of the national total.

  1. Broadband Synthetic Ground Motion Records

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — The dataset contains broadband synthetic ground motion records for three events: 1) 1994 M6.7 Northridge, CA, 2) 1989 M7.0 Loma Prieta, CA, and 3) 1999 M7.5 Izmit,...

  2. Where Synthetic Biology Meets ET

    Science.gov (United States)

    Rothschild, Lynn J.

    2016-01-01

    Synthetic biology - the design and construction of new biological parts and systems and the redesign of existing ones for useful purposes - has the potential to transform fields from pharmaceuticals to fuels. Our lab has focused on the potential of synthetic biology to revolutionize all three major parts of astrobiology: Where do we come from? Where are we going? and Are we alone? For the first and third, synthetic biology is allowing us to answer whether the evolutionary narrative that has played out on planet earth is likely to have been unique or universal. For example, in our lab we are re-evolving the biosynthetic pathways of amino acids in order to understand potential capabilities of an early organism with a limited repertoire of amino acids and developing techniques for the recovery of metals from spent electronics on other planetary bodies. And what about the limits for life? Can we create organisms that expand the envelope for life? In the future synthetic biology will play an increasing role in human activities both on earth, in fields as diverse as human health and the industrial production of novel bio-composites. Beyond earth, we will rely increasingly on biologically-provided life support, as we have throughout our evolutionary history. In order to do this, the field will build on two of the great contributions of astrobiology: studies of the origin of life and life in extreme environments.

  3. Synthetic biology meets tissue engineering.

    Science.gov (United States)

    Davies, Jamie A; Cachat, Elise

    2016-06-15

    Classical tissue engineering is aimed mainly at producing anatomically and physiologically realistic replacements for normal human tissues. It is done either by encouraging cellular colonization of manufactured matrices or cellular recolonization of decellularized natural extracellular matrices from donor organs, or by allowing cells to self-organize into organs as they do during fetal life. For repair of normal bodies, this will be adequate but there are reasons for making unusual, non-evolved tissues (repair of unusual bodies, interface to electromechanical prostheses, incorporating living cells into life-support machines). Synthetic biology is aimed mainly at engineering cells so that they can perform custom functions: applying synthetic biological approaches to tissue engineering may be one way of engineering custom structures. In this article, we outline the 'embryological cycle' of patterning, differentiation and morphogenesis and review progress that has been made in constructing synthetic biological systems to reproduce these processes in new ways. The state-of-the-art remains a long way from making truly synthetic tissues, but there are now at least foundations for future work. © 2016 Authors; published by Portland Press Limited.

  4. The synthetic biology open language.

    Science.gov (United States)

    Myers, Chris; Clancy, Kevin; Misirli, Goksel; Oberortner, Ernst; Pocock, Matthew; Quinn, Jacqueline; Roehner, Nicholas; Sauro, Herbert M

    2015-01-01

    The design and construction of engineered organisms is an emerging new discipline called synthetic biology and holds considerable promise as a new technological platform. The design of biologically engineered systems is however nontrivial, requiring contributions from a wide array of disciplines. One particular issue that confronts synthetic biologists is the ability to unambiguously describe novel designs such that they can be reengineered by a third-party. For this reason, the synthetic biology open language (SBOL) was developed as a community wide standard for formally representing biological designs. A design created by one engineering team can be transmitted electronically to another who can then use this design to reproduce the experimental results. The development and the community of the SBOL standard started in 2008 and has since grown in use with now over 80 participants, including international, academic, and industrial interests. SBOL has stimulated the development of repositories and software tools to help synthetic biologists in their design efforts. This chapter summarizes the latest developments and future of the SBOL standard and its supporting infrastructure.

  5. utilisation of synthetic amino acids

    African Journals Online (AJOL)

    student

    intake, bodyweight gain, egg weight or efficiency of lysine utilisation, but ... When modelling the amino acid requirements of broiler breeder ... Two hundred and forty Cobb broiler breeder hens aged 27 weeks were housed in individual cages. ..... feeds with synthetic amino acids is of importance not only on nutritional and.

  6. Synthetic Aperture Radar - Hardware Development

    Directory of Open Access Journals (Sweden)

    V. Rosner

    2009-06-01

    Full Text Available Experimental real and synthetic aperture radar are developed from the base-band digital unit to the analogue RF parts, based on solid state units, using pulse compression for radar imaging. Proper QPSK code is found for matched filter.

  7. Targets detecting in the ocean using the cross-polarized channels of fully polarimetric SAR data

    Institute of Scientific and Technical Information of China (English)

    WANG Yunhua; LIU Xiaoyan; LI Huimin; ZHANG Yanmin

    2015-01-01

    Azimuth ambiguities (ghost targets) discrimination is of great interest with the development of a synthet-ic aperture radar (SAR). And the azimuth ambiguities are often mistaken as actual targets and cause false alarms. For actual targets, HV channel signals acquired by a fully polarimetric SAR are approximately equal to a VH channel in magnitude and phase, i.e., the reciprocity theorem applies, but shifted in phase about ±ʌ for the first-order azimuth ambiguities. Exploiting this physical behavior, the real part of the product of the two cross-polarized channels, i.e.()SHVSV H, hereafter calledA12r, is employed as a new parameter for a target detection at sea. Compared with other parameters, the contrast ofA12r image between a target and the surrounding sea surface will be obviously increased whenA12r image is processed by mean filtering algo-rithm. Here, in order to detect target with constant false-alarm rates (CFARs), an analytical expression for the probability density function (pdf) ofA12r is derived based on the complex Wishart-distribution. Because a value ofA12r is greater/less than 0 for real target/its azimuth ambiguities, the first-order azimuth ambiguities can be completely removed by thisA12r-based CFAR technology. Experiments accomplished over C-band RADARSAT-2 fully polarimetric imageries confirm the validity.

  8. Towards a Scalable Fully-Implicit Fully-coupled Resistive MHD Formulation with Stabilized FE Methods

    Energy Technology Data Exchange (ETDEWEB)

    Shadid, J N; Pawlowski, R P; Banks, J W; Chacon, L; Lin, P T; Tuminaro, R S

    2009-06-03

    This paper presents an initial study that is intended to explore the development of a scalable fully-implicit stabilized unstructured finite element (FE) capability for low-Mach-number resistive MHD. The discussion considers the development of the stabilized FE formulation and the underlying fully-coupled preconditioned Newton-Krylov nonlinear iterative solver. To enable robust, scalable and efficient solution of the large-scale sparse linear systems generated by the Newton linearization, fully-coupled algebraic multilevel preconditioners are employed. Verification results demonstrate the expected order-of-acuracy for the stabilized FE discretization of a 2D vector potential form for the steady and transient solution of the resistive MHD system. In addition, this study puts forth a set of challenging prototype problems that include the solution of an MHD Faraday conduction pump, a hydromagnetic Rayleigh-Bernard linear stability calculation, and a magnetic island coalescence problem. Initial results that explore the scaling of the solution methods are presented on up to 4096 processors for problems with up to 64M unknowns on a CrayXT3/4. Additionally, a large-scale proof-of-capability calculation for 1 billion unknowns for the MHD Faraday pump problem on 24,000 cores is presented.

  9. Protease-sensitive synthetic prions.

    Directory of Open Access Journals (Sweden)

    David W Colby

    2010-01-01

    Full Text Available Prions arise when the cellular prion protein (PrP(C undergoes a self-propagating conformational change; the resulting infectious conformer is designated PrP(Sc. Frequently, PrP(Sc is protease-resistant but protease-sensitive (s prions have been isolated in humans and other animals. We report here that protease-sensitive, synthetic prions were generated in vitro during polymerization of recombinant (rec PrP into amyloid fibers. In 22 independent experiments, recPrP amyloid preparations, but not recPrP monomers or oligomers, transmitted disease to transgenic mice (n = 164, denoted Tg9949 mice, that overexpress N-terminally truncated PrP. Tg9949 control mice (n = 174 did not spontaneously generate prions although they were prone to late-onset spontaneous neurological dysfunction. When synthetic prion isolates from infected Tg9949 mice were serially transmitted in the same line of mice, they exhibited sPrP(Sc and caused neurodegeneration. Interestingly, these protease-sensitive prions did not shorten the life span of Tg9949 mice despite causing extensive neurodegeneration. We inoculated three synthetic prion isolates into Tg4053 mice that overexpress full-length PrP; Tg4053 mice are not prone to developing spontaneous neurological dysfunction. The synthetic prion isolates caused disease in 600-750 days in Tg4053 mice, which exhibited sPrP(Sc. These novel synthetic prions demonstrate that conformational changes in wild-type PrP can produce mouse prions composed exclusively of sPrP(Sc.

  10. Fully idempotent near-rings and sheaf representations

    OpenAIRE

    Javed Ahsan; Gordon Mason

    1998-01-01

    Fully idempotent near-rings are defined and characterized which yields information on the lattice of ideals of fully idempotent rings and near-rings. The space of prime ideals is topologized and a sheaf representation is given for a class of fully idempotent near-rings which includes strongly regular near-rings.

  11. 42 CFR 412.340 - Fully prospective payment methodology.

    Science.gov (United States)

    2010-10-01

    ... 42 Public Health 2 2010-10-01 2010-10-01 false Fully prospective payment methodology. 412.340...-Related Costs § 412.340 Fully prospective payment methodology. A hospital paid under the fully prospective payment methodology receives a payment per discharge based on a proportion of the hospital-specific rate...

  12. Total synthesis of the α-subunit of human glycoprotein hormones: toward fully synthetic homogeneous human follicle-stimulating hormone.

    Science.gov (United States)

    Aussedat, Baptiste; Fasching, Bernhard; Johnston, Eric; Sane, Neeraj; Nagorny, Pavel; Danishefsky, Samuel J

    2012-02-22

    Described herein is the first total chemical synthesis of the unique α-subunit of the human glycoprotein hormone (α-hGPH). Unlike the biologically derived glycoprotein hormones, which are isolated as highly complex mixtures of glycoforms, α-hGPH obtained by chemical synthesis contains discrete homogeneous glycoforms. Two such systems have been prepared. One contains the disaccharide chitobiose at the natural N-glycosylation sites. The other contains dodecamer oligosaccharides at these same sites. The dodecamer sugar is a consensus sequence incorporating the key features associated with human glycoproteins.

  13. Linear synthesis and immunological properties of a fully synthetic vaccine candidate containing a sialylated MUC1 glycopeptide

    NARCIS (Netherlands)

    Thompson, Pamela; Lakshminarayanan, Vani; Supekar, Nitin T.; Bradley, Judy M.; Cohen, Peter A.; Wolfert, Margreet A.; Gendler, Sandra J.; Boons, Geert Jan

    2015-01-01

    A strategy for the linear synthesis of a sialylated glycolipopeptide cancer vaccine candidate has been developed using a strategically designed sialyl-Tn building block and microwave-assisted solid-phase peptide synthesis. The glycolipopeptide elicited potent humoral and cellular immune responses. T

  14. Synthetic biology character and impact

    CERN Document Server

    Pade, Christian; Wigger, Henning; Gleich, Arnim

    2015-01-01

    Synthetic Biology is already an object of intensive debate. However, to a great extent the discussion to date has been concerned with fundamental ethical, religious and philosophical questions. By contrast, based on an investigation of the field’s scientific and technological character, this book focuses on new functionalities provided by synthetic biology and explores the associated opportunities and risks. Following an introduction to the subject and a discussion of the most central paradigms and methodologies, the book provides an overview of the structure of this field of science and technology. It informs the reader about the current stage of development, as well as topical problems and potential opportunities in important fields of application. But not only the science itself is in focus. In order to investigate its broader impact, ecological as well as ethical implications will be considered, paving the way for a discussion of responsibilities in the context of a field at a transitional crossroads be...

  15. Synthetic cannabinoids: analysis and metabolites.

    Science.gov (United States)

    Elsohly, Mahmoud A; Gul, Waseem; Wanas, Amira S; Radwan, Mohamed M

    2014-02-27

    Cannabimimetics (commonly referred to as synthetic cannabinoids), a group of compounds encompassing a wide range of chemical structures, have been developed by scientists with the hope of achieving selectivity toward one or the other of the cannabinoid receptors CB1 and CB2. The goal was to have compounds that could possess high therapeutic activity without many side effects. However, underground laboratories have used the information generated by the scientific community to develop these compounds for illicit use as marijuana substitutes. This chapter reviews the different classes of these "synthetic cannabinoids" with particular emphasis on the methods used for their identification in the herbal products with which they are mixed and identification of their metabolites in biological specimens.

  16. Synthetic microbial ecosystems for biotechnology.

    Science.gov (United States)

    Pandhal, Jagroop; Noirel, Josselin

    2014-06-01

    Most highly controlled and specific applications of microorganisms in biotechnology involve pure cultures. Maintaining single strain cultures is important for industry as contaminants can reduce productivity and lead to longer "down-times" during sterilisation. However, microbes working together provide distinct advantages over pure cultures. They can undertake more metabolically complex tasks, improve efficiency and even expand applications to open systems. By combining rapidly advancing technologies with ecological theory, the use of microbial ecosystems in biotechnology will inevitably increase. This review provides insight into the use of synthetic microbial communities in biotechnology by applying the engineering paradigm of measure, model, manipulate and manufacture, and illustrate the emerging wider potential of the synthetic ecology field. Systems to improve biofuel production using microalgae are also discussed.

  17. Synthetic LDL as targeted drug delivery vehicle

    Science.gov (United States)

    Forte, Trudy M.; Nikanjam, Mina

    2012-08-28

    The present invention provides a synthetic LDL nanoparticle comprising a lipid moiety and a synthetic chimeric peptide so as to be capable of binding the LDL receptor. The synthetic LDL nanoparticle of the present invention is capable of incorporating and targeting therapeutics to cells expressing the LDL receptor for diseases associated with the expression of the LDL receptor such as central nervous system diseases. The invention further provides methods of using such synthetic LDL nanoparticles.

  18. Designer Drugs: A Synthetic Catastrophe

    OpenAIRE

    James Fratantonio; Lawrence Andrade; Marcelo Febo

    2015-01-01

    Synthetic stimulants can cause hallucinations, aggressive behaviors, death and are sometimes legal. These substances are sold as plant food and bath salts that are "Not for Human Consumption", therefore skirting the 1986 Federal Analogue Act and giving a false pretense of safety. Studies have proved that these substances are toxic, have a high abuse potential, and are becoming extremely prevalent in the United States. This creates a dilemma for law enforcement agents, hospitals, and substance...

  19. Cell microencapsulation with synthetic polymers.

    Science.gov (United States)

    Olabisi, Ronke M

    2015-02-01

    The encapsulation of cells into polymeric microspheres or microcapsules has permitted the transplantation of cells into human and animal subjects without the need for immunosuppressants. Cell-based therapies use donor cells to provide sustained release of a therapeutic product, such as insulin, and have shown promise in treating a variety of diseases. Immunoisolation of these cells via microencapsulation is a hotly investigated field, and the preferred material of choice has been alginate, a natural polymer derived from seaweed due to its gelling conditions. Although many natural polymers tend to gel in conditions favorable to mammalian cell encapsulation, there remain challenges such as batch to batch variability and residual components from the original source that can lead to an immune response when implanted into a recipient. Synthetic materials have the potential to avoid these issues; however, historically they have required harsh polymerization conditions that are not favorable to mammalian cells. As research into microencapsulation grows, more investigators are exploring methods to microencapsulate cells into synthetic polymers. This review describes a variety of synthetic polymers used to microencapsulate cells. © 2014 The Authors. Journal of Biomedical Materials Research Part A Published by Wiley Periodicals, Inc.

  20. Coherence Studies for Synthetic Aperture Sonar

    Science.gov (United States)

    2014-09-30

    TITLE AND SUBTITLE Coherence Studies for Synthetic Aperture Sonar 5a. CONTRACT NUMBER 5b. GRANT NUMBER N00014-13-1-0020 5c. PROGRAM...systematic look at, coherence. 15. SUBJECT TERMS Synthetic; Aperture Sonar , Coherence, Seafloor Scatter, Propagation Variability 16. SECURITY...reconstruction of the document. Coherence Studies for Synthetic Aperture Sonar Anthony P. Lyons The Pennsylvania State University Applied Research

  1. 21 CFR 178.3500 - Glycerin, synthetic.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 3 2010-04-01 2009-04-01 true Glycerin, synthetic. 178.3500 Section 178.3500 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) FOOD FOR... Certain Adjuvants and Production Aids § 178.3500 Glycerin, synthetic. Synthetic glycerin may be...

  2. Synthetic thermoelectric materials comprising phononic crystals

    Science.gov (United States)

    El-Kady, Ihab F; Olsson, Roy H; Hopkins, Patrick; Reinke, Charles; Kim, Bongsang

    2013-08-13

    Synthetic thermoelectric materials comprising phononic crystals can simultaneously have a large Seebeck coefficient, high electrical conductivity, and low thermal conductivity. Such synthetic thermoelectric materials can enable improved thermoelectric devices, such as thermoelectric generators and coolers, with improved performance. Such synthetic thermoelectric materials and devices can be fabricated using techniques that are compatible with standard microelectronics.

  3. Synthetic and Bio-Artificial Tactile Sensing: A Review

    Directory of Open Access Journals (Sweden)

    Maria Chiara Carrozza

    2013-01-01

    Full Text Available This paper reviews the state of the art of artificial tactile sensing, with a particular focus on bio-hybrid and fully-biological approaches. To this aim, the study of physiology of the human sense of touch and of the coding mechanisms of tactile information is a significant starting point, which is briefly explored in this review. Then, the progress towards the development of an artificial sense of touch are investigated. Artificial tactile sensing is analysed with respect to the possible approaches to fabricate the outer interface layer: synthetic skin versus bio-artificial skin. With particular respect to the synthetic skin approach, a brief overview is provided on various technologies and transduction principles that can be integrated beneath the skin layer. Then, the main focus moves to approaches characterized by the use of bio-artificial skin as an outer layer of the artificial sensory system. Within this design solution for the skin, bio-hybrid and fully-biological tactile sensing systems are thoroughly presented: while significant results have been reported for the development of tissue engineered skins, the development of mechanotransduction units and their integration is a recent trend that is still lagging behind, therefore requiring research efforts and investments. In the last part of the paper, application domains and perspectives of the reviewed tactile sensing technologies are discussed.

  4. Premature birth is associated with not fully differentiated contractile smooth muscle cells in human umbilical artery.

    Science.gov (United States)

    Roffino, S; Lamy, E; Foucault-Bertaud, A; Risso, F; Reboul, R; Tellier, E; Chareyre, C; Dignat-George, F; Simeoni, U; Charpiot, P

    2012-06-01

    Smooth muscle cells (SMCs) participate to the regulation of peripheral arterial resistance and blood pressure. To assume their function, SMCs differentiate throughout the normal vascular development from a synthetic phenotype towards a fully differentiated contractile phenotype by acquiring a repertoire of proteins involved in contraction. In human fetal muscular arteries and umbilical arteries (UAs), no data are available regarding the differentiation of SMCs during the last trimester of gestation. The objective of this study was to characterize the phenotype of SMCs during this gestation period in human UAs. We investigated the phenotype of SMCs in human UAs from very preterm (28-31 weeks of gestation), late preterm (32-35 weeks) and term (37-41 weeks) newborns using biochemical and immunohistochemical detection of α-actin, smooth muscle myosin heavy chain, smoothelin, and non-muscle myosin heavy chain. We found that the number of SMCs positive for smoothelin in UAs increased with gestational age. Western blot analysis revealed a higher content of smoothelin in term compared to very preterm UAs. These results show that SMCs in human UAs gradually acquire a fully differentiated contractile phenotype during the last trimester of gestation and thus that premature birth is associated with not fully differentiated contractile SMCs in human UAs. Copyright © 2012 Elsevier Ltd. All rights reserved.

  5. Erasing Borders: A Brief Chronicle of Early Synthetic Biology.

    Science.gov (United States)

    Peretó, Juli

    2016-12-01

    Synthetic Biology is currently presented as an emergent field involving the application of engineering principles to living matter. However, the scientific pursuit of making life in a laboratory is not new and has been the ultimate, if somewhat distant, aim of the origin-of-life research program for many years. Actually, over a century ago, the idea that the synthesis of life was indispensable to fully understand its nature already appealed to material scientists and evolutionists alike. Jacques Loeb proposed a research program from an engineering standpoint, following a synthetic method (experimental abiogenesis) and based on his mechanist vision of living beings, which he considered true chemical machines. Early synthetic biology endeavors, such as the premature experiments by Alfonso L. Herrera in Mexico, Stéphane Leduc in France, and John B. Burke in United Kingdom, were easily ridiculed on both scientific and ideological grounds. However, in retrospect, all those attempts should be considered as legitimate and sincere anti-vitalistic efforts to cross the apparent border between inert and living matter.

  6. Properties of wideband resonant reflectors under fully conical light incidence

    OpenAIRE

    Ko, Yeong Hwan; Niraula, Manoj; Lee, Kyu Jin; Magnusson, Robert

    2016-01-01

    Applying numerical modeling coupled with experiments, we investigate the properties of wideband resonant reflectors under fully conical light incidence. We show that the wave vectors pertinent to resonant first-order diffraction under fully conical mounting vary less with incident angle than those associated with reflectors in classical mounting. Therefore, as the evanescent diffracted waves drive the leaky modes responsible for the resonance effects, fully-conical mounting imbues reflectors ...

  7. Printability of Synthetic Papers by Electrophotography

    Directory of Open Access Journals (Sweden)

    Rozália Szentgyörgyvölgyi

    2010-04-01

    Full Text Available This paper deals with the printability of synthetic papers by the electrophotography technique. Prints of cmyk colour fields from 20% to 100% raster tone values were printed on three types of synthetic papers (one film synthetic paper and two fiber synthetic papers. The investigation of the appearance included densitometric measurement of the cmyk prints. The results have shown differences in the optical density and optical tone value between cmyk prints made on various synthetic papers. The highest optical density and the increase of the optical tone value were observed on the film synthetic paper, where cmyk prints were more saturated. The highest abrasion resistance of cmyk prints was obtained from the fibre synthetic paper.

  8. Synthetic biology: Emerging bioengineering in Indonesia

    Science.gov (United States)

    Suhandono, Sony

    2017-05-01

    The development of synthetic biology will shape the new era of science and technology. It is an emerging bioengineering technique involving genetic engineering which can alter the phenotype and behavior of the cell or the new product. Synthetic biology may produce biomaterials, drugs, vaccines, biosensors, and even a recombinant secondary metabolite used in herbal and complementary medicine, such as artemisinin, a malaria drug which is usually extracted from the plant Artemisia annua. The power of synthetic biology has encouraged scientists in Indonesia, and is still in early development. This paper also covers some research from an Indonesian research institute in synthetic biology such as observing the production of bio surfactants and the enhanced production of artemisinin using a transient expression system. Synthetic biology development in Indonesia may also be related to the iGEM competition, a large synthetic biology research competition which was attended by several universities in Indonesia. The application of synthetic biology for drug discovery will be discussed.

  9. Synthetic cornea: biocompatibility and optics

    Science.gov (United States)

    Parel, Jean-Marie A.; Kaminski, Stefan; Fernandez, Viviana; Alfonso, E.; Lamar, Peggy; Lacombe, Emmanuel; Duchesne, Bernard; Dubovy, Sander; Manns, Fabrice; Rol, Pascal O.

    2002-06-01

    Purpose. Experimentally find a method to provide a safe surgical technique and an inexpensive and long lasting mesoplant for the restoration of vision in patients with bilateral corneal blindness due to ocular surface and stromal diseases. Methods. Identify the least invasive and the safest surgical technique for synthetic cornea implantation. Identify the most compatible biomaterials and the optimal shape a synthetic cornea must have to last a long time when implanted in vivo. Results. Penetrating procedures were deemed too invasive, time consuming, difficult and prone to long term complications. Therefore a non-penetrating delamination technique with central trephination was developed to preserve the integrity of Descemet's membrane and the anterior segment. Even though this approach limits the number of indications, it is acceptable since the majority of patients only have opacities in the stroma. The prosthesis was designed to fit in the removed tissue plane with its skirt fitted under the delaminated stroma. To improve retention, the trephination wall was made conical with the smallest opening on the anterior surface and a hat-shaped mesoplant was made to fit. The skirt was perforated in its perimeter to allow passage of nutrients and tissues ingrowths. To simplify the fabrication procedure, the haptic and optic were made of the same polymer. The intrastromal biocompatibility of several hydrogels was found superior to current clinically used PMMA and PTFE materials. Monobloc mesoplants made of 4 different materials were implanted in rabbits and followed weekly until extrusion occurred. Some remained optically clear allowing for fundus photography. Conclusions. Hydrogel synthetic corneas can be made to survive for periods longer than 1 year. ArF excimer laser photoablation studies are needed to determine the refractive correction potential of these mesoplants. A pilot FDA clinical trial is needed to assess the mesoplant efficacy and very long-term stability.

  10. Synthetic Aperture Vector Flow Imaging

    DEFF Research Database (Denmark)

    Oddershede, Niels

    2008-01-01

    of the thesis considers a method for estimating the two-dimensional velocity vector within the image plane. This method, called synthetic aperture vector flow imaging, is first shortly reviewed. The main contribution of this work is partly an analysis of the method with respect to focusing effects, motion...... estimation. The method can be used for increasing the frame rate of color flow maps or alternatively for a new imaging modality entitled quadroplex imaging, featuring a color flow map and two independent spectrograms at a high frame rate. The second is an alternative method for ultrasonic vector velocity...

  11. Synthetic Biology Guides Biofuel Production

    Science.gov (United States)

    Connor, Michael R.; Atsumi, Shota

    2010-01-01

    The advancement of microbial processes for the production of renewable liquid fuels has increased with concerns about the current fuel economy. The development of advanced biofuels in particular has risen to address some of the shortcomings of ethanol. These advanced fuels have chemical properties similar to petroleum-based liquid fuels, thus removing the need for engine modification or infrastructure redesign. While the productivity and titers of each of these processes remains to be improved, progress in synthetic biology has provided tools to guide the engineering of these processes through present and future challenges. PMID:20827393

  12. Synthetic Studies in Phytochrome Chemistry.

    Science.gov (United States)

    Jacobi, Peter A; Adel Odeh, Imad M; Buddhu, Subhas C; Cai, Guolin; Rajeswari, Sundaramoorthi; Fry, Douglas; Zheng, Wanjun; Desimone, Robert W; Guo, Jiasheng; Coutts, Lisa D; Hauck, Sheila I; Leung, Sam H; Ghosh, Indranath; Pippin, Douglas

    2005-01-01

    An account is given of the author's several approaches to the synthesis of the parent chromophore of phytochrome (1), a protein-bound linear tetrapyrrole derivative that controls photomorphogenesis in higher plants. These studies culminated in enantioselective syntheses of both 2R- and 2S-phytochromobilin (4), as well as several (13)C-labeled derivatives designed to probe the site of Z,E-isomerization during photoexcitation. When reacted in vitro, synthetic 2R-4 and recombinant-derived phytochrome apoprotein N-C produced a protein-bound chromophore with identical difference spectra to naturally occurring 1.

  13. Space noise synthetic aperture radar

    Science.gov (United States)

    Kulpa, Krzysztof S.

    2006-03-01

    The paper presents limitations of space borne synthetic aperture radars, caused by range and Doppler velocity ambiguities, and the concept of usage of the noise radar technology for creation of high-resolution space SAR images. The noise SAR is free from limitation caused by the periodicity of pulse waveform ambiguity function, and therefore this technology can be used in the future space missions. The basic concept of noise SAR image formation is also presented. The image formation algorithm has been verified using the simulated data produced by Raw Radar Data Simulator.

  14. Synthetic Biology Guides Biofuel Production

    Directory of Open Access Journals (Sweden)

    Michael R. Connor

    2010-01-01

    Full Text Available The advancement of microbial processes for the production of renewable liquid fuels has increased with concerns about the current fuel economy. The development of advanced biofuels in particular has risen to address some of the shortcomings of ethanol. These advanced fuels have chemical properties similar to petroleum-based liquid fuels, thus removing the need for engine modification or infrastructure redesign. While the productivity and titers of each of these processes remains to be improved, progress in synthetic biology has provided tools to guide the engineering of these processes through present and future challenges.

  15. Environmental analysis of synthetic liquid fuels

    Energy Technology Data Exchange (ETDEWEB)

    Clusen, Ruth C.

    1979-07-12

    Assuming application of the most effective environmental control technolgies and practices, deployment of synthetic liquids facilities on an accelerated schedule to 1990 appears feasible in terms of current environmental constraints. Yet-to-be-defined regulations, in their stringent forms, could change this finding. These regulations include visibility, short-term nitrogen oxide ambient standard, extension of prevention of significant deterioration (PSD) regulations, hazardous waste standards, toxic product regulations, and occupational safety standards. Any production level requires resolution of a number of institutional constraints, including permitting delays and the acceptability of the facility to the local population and state authorities. The greatest impediments for the first-generation technologies include long time delays, facility size limitations, and unwillingness to change the character of the community. There appears to be no absolute environmentally related constraint identified for any of the first-generation surface conversion technologies; second-generation processes run greater risks of major environmental problems. For in situ processes, the major risk is leaching of hazardous materials into water; for direct liquefaction, concern is potential worker and public exposure to toxic substances. Yet-to-be-defined regulations are perceived by developers as major technology development impediments. These include air quality standards (visibility, short-term nitrogen oxide and new PSD regulations), regulation of hazardous wastes and toxic products, underground injection guidelines, and worker safety regulations. Some risk exists that environmental R and D programs cannot fully satisfy all existing and expected regulatory demands, but these risks should be known by 1985 and it is expected that appropriate control adjustments can be made. (LTN)

  16. Tracking the emergence of synthetic biology.

    Science.gov (United States)

    Shapira, Philip; Kwon, Seokbeom; Youtie, Jan

    2017-01-01

    Synthetic biology is an emerging domain that combines biological and engineering concepts and which has seen rapid growth in research, innovation, and policy interest in recent years. This paper contributes to efforts to delineate this emerging domain by presenting a newly constructed bibliometric definition of synthetic biology. Our approach is dimensioned from a core set of papers in synthetic biology, using procedures to obtain benchmark synthetic biology publication records, extract keywords from these benchmark records, and refine the keywords, supplemented with articles published in dedicated synthetic biology journals. We compare our search strategy with other recent bibliometric approaches to define synthetic biology, using a common source of publication data for the period from 2000 to 2015. The paper details the rapid growth and international spread of research in synthetic biology in recent years, demonstrates that diverse research disciplines are contributing to the multidisciplinary development of synthetic biology research, and visualizes this by profiling synthetic biology research on the map of science. We further show the roles of a relatively concentrated set of research sponsors in funding the growth and trajectories of synthetic biology. In addition to discussing these analyses, the paper notes limitations and suggests lines for further work.

  17. Microbial synthetic biology for human therapeutics.

    Science.gov (United States)

    Jain, Aastha; Bhatia, Pooja; Chugh, Archana

    2012-06-01

    The emerging field of synthetic biology holds tremendous potential for developing novel drugs to treat various human conditions. The current study discusses the scope of synthetic biology for human therapeutics via microbial approach. In this context, synthetic biology aims at designing, engineering and building new microbial synthetic cells that do not pre-exist in nature as well as re-engineer existing microbes for synthesis of therapeutic products. It is expected that the construction of novel microbial genetic circuitry for human therapeutics will greatly benefit from the data generated by 'omics' approaches and multidisciplinary nature of synthetic biology. Development of novel antimicrobial drugs and vaccines by engineering microbial systems are a promising area of research in the field of synthetic biology for human theragnostics. Expression of plant based medicinal compounds in the microbial system using synthetic biology tools is another avenue dealt in the present study. Additionally, the study suggest that the traditional medicinal knowledge can do value addition for developing novel drugs in the microbial systems using synthetic biology tools. The presented work envisions the success of synthetic biology for human therapeutics via microbial approach in a holistic manner. Keeping this in view, various legal and socio-ethical concerns emerging from the use of synthetic biology via microbial approach such as patenting, biosafety and biosecurity issues have been touched upon in the later sections.

  18. Shape analysis of synthetic diamond

    CERN Document Server

    Mullan, C

    1997-01-01

    Two-dimensional images of synthetic industrial diamond particles were obtained using a camera, framegrabber and PC-based image analysis software. Various methods for shape quantification were applied, including two-dimensional shape factors, Fourier series expansion of radius as a function of angle, boundary fractal analysis, polygonal harmonics, and comer counting methods. The shape parameter found to be the most relevant was axis ratio, defined as the ratio of the minor axis to the major axis of the ellipse with the same second moments of area as the particle. Axis ratio was used in an analysis of the sorting of synthetic diamonds on a vibrating table. A model was derived based on the probability that a particle of a given axis ratio would travel to a certain bin. The model described the sorting of bulk material accurately but it was found not to be applicable if the shape mix of the feed material changed dramatically. This was attributed to the fact that the particle-particle interference was not taken int...

  19. Towards developing algal synthetic biology.

    Science.gov (United States)

    Scaife, Mark Aden; Smith, Alison Gail

    2016-06-15

    The genetic, physiological and metabolic diversity of microalgae has driven fundamental research into photosynthesis, flagella structure and function, and eukaryotic evolution. Within the last 10 years these organisms have also been investigated as potential biotechnology platforms, for example to produce high value compounds such as long chain polyunsaturated fatty acids, pigments and antioxidants, and for biodiesel precursors, in particular triacylglycerols (TAGs). Transformation protocols, molecular tools and genome sequences are available for a number of model species including the green alga Chlamydomonas reinhardtii and the diatom Phaeodactylum tricornutum, although for both species there are bottlenecks to be overcome to allow rapid and predictable genetic manipulation. One approach to do this would be to apply the principles of synthetic biology to microalgae, namely the cycle of Design-Build-Test, which requires more robust, predictable and high throughput methods. In this mini-review we highlight recent progress in the areas of improving transgene expression, genome editing, identification and design of standard genetic elements (parts), and the use of microfluidics to increase throughput. We suggest that combining these approaches will provide the means to establish algal synthetic biology, and that application of standard parts and workflows will avoid parallel development and capitalize on lessons learned from other systems.

  20. Catalysts from synthetic genetic polymers.

    Science.gov (United States)

    Taylor, Alexander I; Pinheiro, Vitor B; Smola, Matthew J; Morgunov, Alexey S; Peak-Chew, Sew; Cozens, Christopher; Weeks, Kevin M; Herdewijn, Piet; Holliger, Philipp

    2015-02-19

    The emergence of catalysis in early genetic polymers such as RNA is considered a key transition in the origin of life, pre-dating the appearance of protein enzymes. DNA also demonstrates the capacity to fold into three-dimensional structures and form catalysts in vitro. However, to what degree these natural biopolymers comprise functionally privileged chemical scaffolds for folding or the evolution of catalysis is not known. The ability of synthetic genetic polymers (XNAs) with alternative backbone chemistries not found in nature to fold into defined structures and bind ligands raises the possibility that these too might be capable of forming catalysts (XNAzymes). Here we report the discovery of such XNAzymes, elaborated in four different chemistries (arabino nucleic acids, ANA; 2'-fluoroarabino nucleic acids, FANA; hexitol nucleic acids, HNA; and cyclohexene nucleic acids, CeNA) directly from random XNA oligomer pools, exhibiting in trans RNA endonuclease and ligase activities. We also describe an XNA-XNA ligase metalloenzyme in the FANA framework, establishing catalysis in an entirely synthetic system and enabling the synthesis of FANA oligomers and an active RNA endonuclease FANAzyme from its constituent parts. These results extend catalysis beyond biopolymers and establish technologies for the discovery of catalysts in a wide range of polymer scaffolds not found in nature. Evolution of catalysis independent of any natural polymer has implications for the definition of chemical boundary conditions for the emergence of life on Earth and elsewhere in the Universe.

  1. Design of a statically balanced fully compliant grasper

    NARCIS (Netherlands)

    Lamers, A.J.; Gallego Sanchez, J.A.; Herder, J.L.

    2015-01-01

    Monolithic and thus fully compliant surgical graspers are promising when they provide equal or better force feedback than conventional graspers. In this work for the first time a fully compliant grasper is designed to exhibit zero stiffness and zero operation force. The design problem is addressed b

  2. Word selection affects perceptions of synthetic biology.

    Science.gov (United States)

    Pearson, Brianna; Snell, Sam; Bye-Nagel, Kyri; Tonidandel, Scott; Heyer, Laurie J; Campbell, A Malcolm

    2011-07-21

    Members of the synthetic biology community have discussed the significance of word selection when describing synthetic biology to the general public. In particular, many leaders proposed the word "create" was laden with negative connotations. We found that word choice and framing does affect public perception of synthetic biology. In a controlled experiment, participants perceived synthetic biology more negatively when "create" was used to describe the field compared to "construct" (p = 0.008). Contrary to popular opinion among synthetic biologists, however, low religiosity individuals were more influenced negatively by the framing manipulation than high religiosity people. Our results suggest that synthetic biologists directly influence public perception of their field through avoidance of the word "create".

  3. Word selection affects perceptions of synthetic biology

    Directory of Open Access Journals (Sweden)

    Tonidandel Scott

    2011-07-01

    Full Text Available Abstract Members of the synthetic biology community have discussed the significance of word selection when describing synthetic biology to the general public. In particular, many leaders proposed the word "create" was laden with negative connotations. We found that word choice and framing does affect public perception of synthetic biology. In a controlled experiment, participants perceived synthetic biology more negatively when "create" was used to describe the field compared to "construct" (p = 0.008. Contrary to popular opinion among synthetic biologists, however, low religiosity individuals were more influenced negatively by the framing manipulation than high religiosity people. Our results suggest that synthetic biologists directly influence public perception of their field through avoidance of the word "create".

  4. Creating biological nanomaterials using synthetic biology

    Science.gov (United States)

    Rice, MaryJoe K.; Ruder, Warren C.

    2014-02-01

    Synthetic biology is a new discipline that combines science and engineering approaches to precisely control biological networks. These signaling networks are especially important in fields such as biomedicine and biochemical engineering. Additionally, biological networks can also be critical to the production of naturally occurring biological nanomaterials, and as a result, synthetic biology holds tremendous potential in creating new materials. This review introduces the field of synthetic biology, discusses how biological systems naturally produce materials, and then presents examples and strategies for incorporating synthetic biology approaches in the development of new materials. In particular, strategies for using synthetic biology to produce both organic and inorganic nanomaterials are discussed. Ultimately, synthetic biology holds the potential to dramatically impact biological materials science with significant potential applications in medical systems.

  5. Synthetic biology - the state of play.

    Science.gov (United States)

    Kitney, Richard; Freemont, Paul

    2012-07-16

    Just over two years ago there was an article in Nature entitled "Five Hard Truths for Synthetic Biology". Since then, the field has moved on considerably. A number of economic commentators have shown that synthetic biology very significant industrial potential. This paper addresses key issues in relation to the state of play regarding synthetic biology. It first considers the current background to synthetic biology, whether it is a legitimate field and how it relates to foundational biological sciences. The fact that synthetic biology is a translational field is discussed and placed in the context of the industrial translation process. An important aspect of synthetic biology is platform technology, this topic is also discussed in some detail. Finally, examples of application areas are described. Copyright © 2012. Published by Elsevier B.V.

  6. Synthetic genome engineering forging new frontiers for wine yeast.

    Science.gov (United States)

    Pretorius, Isak S

    2017-02-01

    Over the past 15 years, the seismic shifts caused by the convergence of biomolecular, chemical, physical, mathematical, and computational sciences alongside cutting-edge developments in information technology and engineering have erupted into a new field of scientific endeavor dubbed Synthetic Biology. Recent rapid advances in high-throughput DNA sequencing and DNA synthesis techniques are enabling the design and construction of new biological parts (genes), devices (gene networks) and modules (biosynthetic pathways), and the redesign of biological systems (cells and organisms) for useful purposes. In 2014, the budding yeast Saccharomyces cerevisiae became the first eukaryotic cell to be equipped with a fully functional synthetic chromosome. This was achieved following the synthesis of the first viral (poliovirus in 2002 and bacteriophage Phi-X174 in 2003) and bacterial (Mycoplasma genitalium in 2008 and Mycoplasma mycoides in 2010) genomes, and less than two decades after revealing the full genome sequence of a laboratory (S288c in 1996) and wine (AWRI1631 in 2008) yeast strain. A large international project - the Synthetic Yeast Genome (Sc2.0) Project - is now underway to synthesize all 16 chromosomes (∼12 Mb carrying ∼6000 genes) of the sequenced S288c laboratory strain by 2018. If successful, S. cerevisiae will become the first eukaryote to cross the horizon of in silico design of complex cells through de novo synthesis, reshuffling, and editing of genomes. In the meantime, yeasts are being used as cell factories for the semi-synthetic production of high-value compounds, such as the potent antimalarial artemisinin, and food ingredients, such as resveratrol, vanillin, stevia, nootkatone, and saffron. As a continuum of previously genetically engineered industrially important yeast strains, precision genome engineering is bound to also impact the study and development of wine yeast strains supercharged with synthetic DNA. The first taste of what the future

  7. A synthetic zero air standard

    Science.gov (United States)

    Pearce, Ruth

    2016-04-01

    A Synthetic Zero Air Standard R. E. Hill-Pearce, K. V. Resner, D. R. Worton, P. J. Brewer The National Physical Laboratory Teddington, Middlesex TW11 0LW UK We present work towards providing traceability for measurements of high impact greenhouse gases identified by the World Meteorological Organisation (WMO) as critical for global monitoring. Standards for these components are required with challengingly low uncertainties to improve the quality assurance and control processes used for the global networks to better assess climate trends. Currently the WMO compatibility goals require reference standards with uncertainties of < 100 nmolmol-1 for CO2 (northern hemisphere) and < 2 nmolmol-1 for CH4 and CO. High purity zero gas is required for both the balance gas in the preparation of reference standards and for baseline calibrations of instrumentation. Quantification of the amount fraction of the target components in the zero gas is a significant contributor to the uncertainty and is challenging due to limited availability of reference standard at the amount fraction of the measurand and limited analytical techniques with sufficient detection limits. A novel dilutor was used to blend NPL Primary Reference Gas Mixtures containing CO2, CH4 and CO at atmospheric amount fractions with a zero gas under test. Several mixtures were generated with nominal dilution ratios ranging from 2000:1 to 350:1. The baseline of two cavity ring down spectrometers was calibrated using the zero gas under test after purification by oxidative removal of CO and hydrocarbons to < 1 nmolmol-1 (SAES PS15-GC50) followed by the removal of CO2 and water vapour to < 100 pmolmol-1 (SAES MC190). Using the standard addition method.[1] we have quantified the amount fraction of CO, CO2, and CH4 in scrubbed whole air (Scott Marrin) and NPL synthetic zero air. This is the first synthetic zero air standard with a matrix of N2, O2 and Ar closely matching ambient composition with gravimetrically assigned

  8. Synthetic Lipoproteins as Carriers for Drug Delivery.

    Science.gov (United States)

    Huang, Gangliang; Liu, Yang; Huang, Hualiang

    2016-01-01

    Synthetic lipoprotein is an effective carrier of targeted delivery for drugs. It has the very small size, good biocompatibility, suitable half-life, and specific lipoprotein receptorbinding capacity. Compared with the traditional natural lipoprotein, synthetic lipoprotein not only retains the original biological characteristics and functions, but also exhibits the excellent characteristics in drug delivery. Herein, the advantages, development, applications, and prospect of synthetic lipoproteins as drug carriers were summarized.

  9. Nature's chemicals and synthetic chemicals: comparative toxicology.

    OpenAIRE

    Ames, B N; Profet, M; Gold, L S

    1990-01-01

    The toxicology of synthetic chemicals is compared to that of natural chemicals, which represent the vast bulk of the chemicals to which humans are exposed. It is argued that animals have a broad array of inducible general defenses to combat the changing array of toxic chemicals in plant food (nature's pesticides) and that these defenses are effective against both natural and synthetic toxins. Synthetic toxins such as dioxin are compared to natural chemicals, such as indole carbinol (in brocco...

  10. Synthetic Cathinones: A New Public Health Problem

    OpenAIRE

    Karila, Laurent; Megarbane, Bruno; Cottencin, Olivier; Lejoyeux, Michel

    2015-01-01

    New psychoactive substances (NPS) have completely modified the drug scene and the current landscape of addiction. Synthetic substances, such as substituted or synthetic cathinones, also known as « legal highs », are often produced and used to mimic the effects of controlled drugs such as cocaine, methylenedioxymethamphetamine (MDMA, ecstasy), and methamphetamine. The overwhelming majority of synthetic cathinones are produced in China and South East Asian countries. The Internet has emerged as...

  11. Veterans Affairs Suicide Prevention Synthetic Dataset

    Data.gov (United States)

    Department of Veterans Affairs — The VA's Veteran Health Administration, in support of the Open Data Initiative, is providing the Veterans Affairs Suicide Prevention Synthetic Dataset (VASPSD). The...

  12. Veterans Affairs Suicide Prevention Synthetic Dataset Metadata

    Data.gov (United States)

    Department of Veterans Affairs — The VA's Veteran Health Administration, in support of the Open Data Initiative, is providing the Veterans Affairs Suicide Prevention Synthetic Dataset (VASPSD). The...

  13. Characterization of Synthetic Peptides by Mass Spectrometry

    DEFF Research Database (Denmark)

    Prabhala, Bala K; Mirza, Osman; Højrup, Peter;

    2015-01-01

    Mass spectrometry (MS) is well suited for analysis of the identity and purity of synthetic peptides. The sequence of a synthetic peptide is most often known, so the analysis is mainly used to confirm the identity and purity of the peptide. Here, simple procedures are described for MALDI-TOF-MS an......Mass spectrometry (MS) is well suited for analysis of the identity and purity of synthetic peptides. The sequence of a synthetic peptide is most often known, so the analysis is mainly used to confirm the identity and purity of the peptide. Here, simple procedures are described for MALDI...

  14. Synthetic Applications of Chiral Furanboronate

    Institute of Scientific and Technical Information of China (English)

    CHAN; KinFai

    2001-01-01

    We recently uncovered that consecutive reactions of chiral furfural-boronate 1 with a lithium alkoxide and a nucleophile led to the formation of alcohols 2 with good diastereoselection in favor of S-configuration at the newly generated chiral carbon. In addition, it was also found that 2a and 2b were chromatographically separable on a silica gel column. This reaction is believed to involve a tetrahedral borate intermediate, as can be substantiated by 11BNMR spectroscopic studies. Chiral furanmethanolboronates 2a(or 2b) underwent a palladium-catalyzed Suzuki coupling to form enantiomerically pure furans 3, which can be further converted to the synthetically useful hydroxypyranones 4.1,2,3 In addition, Mukaiyama reaction of 1 also led to chromatographically separable diastereomeric aldol-products. The scope and limitation of these conversions will be discussed.  ……

  15. Synthetically simple, highly resilient hydrogels.

    Science.gov (United States)

    Cui, Jun; Lackey, Melissa A; Madkour, Ahmad E; Saffer, Erika M; Griffin, David M; Bhatia, Surita R; Crosby, Alfred J; Tew, Gregory N

    2012-03-12

    Highly resilient synthetic hydrogels were synthesized by using the efficient thiol-norbornene chemistry to cross-link hydrophilic poly(ethylene glycol) (PEG) and hydrophobic polydimethylsiloxane (PDMS) polymer chains. The swelling and mechanical properties of the hydrogels were controlled by the relative amounts of PEG and PDMS. The fracture toughness (G(c)) was increased to 80 J/m(2) as the water content of the hydrogel decreased from 95% to 82%. In addition, the mechanical energy storage efficiency (resilience) was more than 97% at strains up to 300%. This is comparable with one of the most resilient materials known: natural resilin, an elastic protein found in many insects, such as in the tendons of fleas and the wings of dragonflies. The high resilience of these hydrogels can be attributed to the well-defined network structure provided by the versatile chemistry, low cross-link density, and lack of secondary structure in the polymer chains.

  16. Engineering life through Synthetic Biology.

    Science.gov (United States)

    Chopra, Paras; Kamma, Akhil

    2006-01-01

    Synthetic Biology is a field involving synthesis of novel biological systems which are not generally found in nature. It has brought a new paradigm in science as it has enabled scientists to create life from the scratch, hence helping better understand the principles of biology. The viability of living organisms that use unnatural molecules is also being explored. Unconventional projects such as DNA playing tic-tac-toe, bacterial photographic film, etc. are taking biology to its extremes. The field holds a promise for mass production of cheap drugs and programming bacteria to seek-and-destroy tumors in the body. However, the complexity of biological systems make the field a challenging one. In addition to this, there are other major technical and ethical challenges which need to be addressed before the field realizes its true potential.

  17. Synthetic biology: a utilitarian perspective.

    Science.gov (United States)

    Smith, Kevin

    2013-10-01

    I examine the positive and negative features of synthetic biology ('SynBio') from a utilitarian ethical perspective. The potential beneficial outcomes from SynBio in the context of medicine are substantial; however it is not presently possible to predict precise outcomes due to the nascent state of the field. Potential negative outcomes from SynBio also exist, including iatrogenesis and bioterrorism; however it is not yet possible to quantify these risks. I argue that the application of a 'precautionary' approach to SynBio is ethically fraught, as is the notion that SynBio-associated knowledge ought to be restricted. I conclude that utilitarians ought to support a broadly laissez-faire stance in respect of SynBio.

  18. Moessbauer study of synthetic jarosites

    Energy Technology Data Exchange (ETDEWEB)

    Kovacs, K., E-mail: kkriszti@bolyai.elte.hu [Eoetvoes Lorand University, Laboratory of Nuclear Chemistry, Institute of Chemistry (Hungary); Kuzmann, E. [Hungarian Academy of Sciences, Laboratory of Nuclear Chemistry, Chemical Research Center (Hungary); Homonnay, Z.; Vertes, A. [Eoetvoes Lorand University, Laboratory of Nuclear Chemistry, Institute of Chemistry (Hungary); Gunneriusson, L. [Lulea University of Technology, Division of Chemistry (Sweden); Sandstroem, A. [Lulea University of Technology, Division of Process Metallurgy (Sweden)

    2008-09-15

    {sup 57}Fe Moessbauer spectroscopy and PXRD were used to study artificially prepared jarosites with the compositions of KFe{sub 3}(SO{sub 4}){sub 2}(OH){sub 6-x}F{sub x}x 0 - 1.6 PXRD measurements revealed single phase jarosite samples. All Moessbauer spectra taken at room temperature exhibit a quadrupole doublet corresponding to mineral jarosite. However, at low temperature where the mineral jarosite has a well resolved sextet, the synthetic jarosite even with x = 0 F{sup -} content shows a relaxation transition. The spectra indicate that with increasing F{sup -} concentration, the paramagnetic-antiferromagnetic transition temperature is decreasing. The results can be used in the analysis of artificial jarosites or those formed during biomineralization processes.

  19. Synthetic CA II Triplet Lines

    Science.gov (United States)

    Erdelyi, M. M.; Barbuy, B.

    1990-11-01

    RESUMEN. Se hicieron calculos de sintesis del espectro en el ititervalo de longitud de onda - 8700 A, ara ? oder verificar el comporta- mien to de diferentes lineas moleculares y at5micas como funci5n de los parametros esteldres de temperatura, gravedad y metalicidad. El espec- tro sintetico ha sido generado para:(a) todas las , (b) solamente de CN, (c) solamente de TiO, y (d) solamente lineas at6micas. Abstract. Spectrum synthesis calculations are carried out in the wavelength interval X 8300 - 8700 A, in order to verify the behaviour of different molecular and atomic lines as a function of the stellar para meters temperature, gravity and metallicity. Synthetic spectra were ge nerated for: (a) all lines, (b) only CN lines, (c) only TiO lines, and (d) only atomic lines Key `td6: LINE-PROFILE - ST S-AThOSPHERES

  20. [Mephedrone: a new synthetic drug].

    Science.gov (United States)

    Petit, Aymeric; Karila, Laurent; Sananes, Michel; Lejoyeux, Michel

    2013-10-01

    Mephedrone is a synthetic psychostimulant derived from cathinone belonging to the family of phenylethylamines. Sold on the Internet, it has recently emerged in France in recreational settings, and is mostly consumed by young people from the gay community and festive environment. Identified in 2008 by the European Monitoring Centre for Drugs and Drug Addiction as a new drug on the market, the use of mephedrone has attracted media attention following the suspicious deaths of two young adults in Sweden and in England. Its legal aspect, ease of getting it on the Internet and cheap price coupled and an alternative-seeking to other psychostimulants make mephedrone a prime target for these populations and a source of abuse, with psychiatric and somatic complications. There is no curative pharmacological treatment approved by health authorities.

  1. Parity-Time Synthetic Laser

    CERN Document Server

    Feng, Liang; Ma, Renmin; Wang, Yuan; Zhang, Xiang

    2014-01-01

    Parity-time (PT) symmetry is a fundamental notion in quantum field theories1,2. It has opened a new paradigm for non-Hermitian Hamiltonians ranging from quantum mechanics, electronics, to optics. In the realm of optics, optical loss is responsible for power dissipation, therefore typically degrading device performance such as attenuation of a laser beam. By carefully exploiting optical loss in the complex dielectric permittivity, however, recent exploration of PT symmetry revolutionizes our understandings in fundamental physics and intriguing optical phenomena such as exceptional points and phase transition that are critical for high-speed optical modulators3-9. The interplay between optical gain and loss in photonic PT synthetic matters offers a new criterion of positively utilizing loss to efficiently manipulate gain and its associated optical properties10-19. Instead of simply compensating optical loss in conventional lasers, for example, it is theoretically proposed that judiciously designed delicate modu...

  2. Synthetic biology of antimicrobial discovery

    Science.gov (United States)

    Zakeri, Bijan; Lu, Timothy K.

    2012-01-01

    Antibiotic discovery has a storied history. From the discovery of penicillin by Sir Alexander Fleming to the relentless quest for antibiotics by Selman Waksman, the stories have become like folklore, used to inspire future generations of scientists. However, recent discovery pipelines have run dry at a time when multidrug resistant pathogens are on the rise. Nature has proven to be a valuable reservoir of antimicrobial agents, which are primarily produced by modularized biochemical pathways. Such modularization is well suited to remodeling by an interdisciplinary approach that spans science and engineering. Herein, we discuss the biological engineering of small molecules, peptides, and non-traditional antimicrobials and provide an overview of the growing applicability of synthetic biology to antimicrobials discovery. PMID:23654251

  3. Jet fuels from synthetic crudes

    Science.gov (United States)

    Antoine, A. C.; Gallagher, J. P.

    1977-01-01

    An investigation was conducted to determine the technical problems in the conversion of a significant portion of a barrel of either a shale oil or a coal synthetic crude oil into a suitable aviation turbine fuel. Three syncrudes were used, one from shale and two from coal, chosen as representative of typical crudes from future commercial production. The material was used to produce jet fuels of varying specifications by distillation, hydrotreating, and hydrocracking. Attention is given to process requirements, hydrotreating process conditions, the methods used to analyze the final products, the conditions for shale oil processing, and the coal liquid processing conditions. The results of the investigation show that jet fuels of defined specifications can be made from oil shale and coal syncrudes using readily available commercial processes.

  4. Synthetic Applications of Chiral Furanboronate

    Institute of Scientific and Technical Information of China (English)

    CHAN KinFai; WONG Henry N,C.

    2001-01-01

    @@ We recently uncovered that consecutive reactions of chiral furfural-boronate 1 with a lithium alkoxide and a nucleophile led to the formation of alcohols 2 with good diastereoselection in favor of S-configuration at the newly generated chiral carbon. In addition, it was also found that 2a and 2b were chromatographically separable on a silica gel column. This reaction is believed to involve a tetrahedral borate intermediate, as can be substantiated by 11BNMR spectroscopic studies. Chiral furanmethanolboronates 2a(or 2b) underwent a palladium-catalyzed Suzuki coupling to form enantiomerically pure furans 3, which can be further converted to the synthetically useful hydroxypyranones 4.1,2,3 In addition, Mukaiyama reaction of 1 also led to chromatographically separable diastereomeric aldol-products. The scope and limitation of these conversions will be discussed.

  5. Synthetic Aperture Vector Flow Imaging

    DEFF Research Database (Denmark)

    Villagómez Hoyos, Carlos Armando

    The main objective of this project was to continue the development of a synthetic aperture vector flow estimator. This type of estimator is capable of overcoming two of the major limitations in conventional ultrasound systems: 1) the inability to scan large region of interest with high temporal...... resolutions; 2) the lack of capability in detecting flow other than the one along the direction of the beam. Addressing these technical limitations would translate in the clinic as a gain in valuable clinical information and a removal of operator-dependant sources of error, which would improve the diagnosis....... The main contribution of this work was the development of an angle estimator which features high accuracy and low standard deviation over the full 360◦ range. The estimator demonstrated its capability of operating at high frame rates (> 1000 Hz), and simultaneously detecting a large range of flow...

  6. Broadband synthetic aperture geoacoustic inversion.

    Science.gov (United States)

    Tan, Bien Aik; Gerstoft, Peter; Yardim, Caglar; Hodgkiss, William S

    2013-07-01

    A typical geoacoustic inversion procedure involves powerful source transmissions received on a large-aperture receiver array. A more practical approach is to use a single moving source and/or receiver in a low signal to noise ratio (SNR) setting. This paper uses single-receiver, broadband, frequency coherent matched-field inversion and exploits coherently repeated transmissions to improve estimation of the geoacoustic parameters. The long observation time creates a synthetic aperture due to relative source-receiver motion. This approach is illustrated by studying the transmission of multiple linear frequency modulated (LFM) pulses which results in a multi-tonal comb spectrum that is Doppler sensitive. To correlate well with the measured field across a receiver trajectory and to incorporate transmission from a source trajectory, waveguide Doppler and normal mode theory is applied. The method is demonstrated with low SNR, 100-900 Hz LFM pulse data from the Shallow Water 2006 experiment.

  7. Microorganism Utilization for Synthetic Milk

    Science.gov (United States)

    Morford, Megan A.; Khodadad, Christina L.; Caro, Janicce I.; Spencer, LaShelle E.; Richards, Jeffery T.; Strayer, Richard F.; Birmele, Michele N.; Wheeler, Raymond M.

    2014-01-01

    A desired architecture for long duration spaceflight, like aboard the International Space Station or for future missions to Mars, is to provide a supply of fresh food crops for the astronauts. However, some crops can create a high proportion of inedible plant waste. The main goal of the Synthetic Biology project, Cow in a Column, was to produce the components of milk (sugar, lipid, protein) from inedible plant waste by utilizing microorganisms (fungi, yeast, bacteria). Of particular interest was utilizing the valuable polysaccharide, cellulose, found in plant waste, to naturally fuel-through microorganism cellular metabolism- the creation of sugar (glucose), lipid (milk fat), and protein (casein) in order to produce a synthetic edible food product. Environmental conditions such as pH, temperature, carbon source, aeration, and choice microorganisms were optimized in the laboratory and the desired end-products, sugars and lipids, were analyzed. Trichoderma reesei, a known cellulolytic fungus, was utilized to drive the production of glucose, with the intent that the produced glucose would serve as the carbon source for milk fat production and be a substitute for the milk sugar lactose. Lipid production would be carried out by Rhodosporidium toruloides, yeast known to accumulate those lipids that are typically found in milk fat. Results showed that glucose and total lipid content were below what was expected during this phase of experimentation. In addition, individual analysis of six fatty acids revealed that the percentage of each fatty acid was lower than naturally produced bovine milk. Overall, this research indicates that microorganisms could be utilized to breakdown inedible solid waste to produce useable products. For future work, the production of the casein protein for milk would require the development of a genetically modified organism, which was beyond the scope of the original project. Additional trials would be needed to further refine the required

  8. A construction of fully diverse unitary space-time codes

    Institute of Scientific and Technical Information of China (English)

    YU Fei; TONG HongXi

    2009-01-01

    Fully diverse unitary space-time codes are useful in multiantenna communications,especially in multiantenna differential modulation.Recently,two constructions of parametric fully diverse unitary space-time codes for three antennas system have been introduced.We propose a new construction method based on the constructions.In the present paper,fully diverse codes for systems of odd prime number antennas are obtained from this construction.Space-time codes from present construction are found to have better error performance than many best known ones.

  9. A construction of fully diverse unitary space-time codes

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Fully diverse unitary space-time codes are useful in multiantenna communications, especially in multiantenna differential modulation. Recently, two constructions of parametric fully diverse unitary space-time codes for three antennas system have been introduced. We propose a new construction method based on the constructions. In the present paper, fully diverse codes for systems of odd prime number antennas are obtained from this construction. Space-time codes from present construction are found to have better error performance than many best known ones.

  10. A CODE DESIGN CRITERIA FOR NOT FULLY CONNECTED CHANNEL

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    There are parallel channels which are not fully connected in practice, such as Frequency DivisionMultiplex (FDM or Orthogonal FDM) systems. Conventional space-time codes can be used for such parallelchannels but not the optimal. Based on the derivation of PEP expression for codes transmitted on parallel blockfading channels, criteria of codes design for not fully connected channels are proposed and are compared withTarokh's criteria for fully connected channel. New codes for such channels are provided by systematical andexhaustive search. Simulation results show that these codes offer better performance on parallel FDM channelsthan other known codes.

  11. The 'atom-splitting' moment of synthetic biology: Nuclear physics and synthetic biology share common features

    OpenAIRE

    Valentine, Alex J; Kleinert, Aleysia; Verdier, Jerome

    2012-01-01

    Synthetic biology and nuclear physics share many commonalities in terms of public perception and funding. Synthetic biologists could learn valuable lessons from the history of the atomic bomb and nuclear power.

  12. Towards biologically relevant synthetic designer matrices in 3D bioprinting for tissue engineering and regenerative medicine

    KAUST Repository

    Costa, Rúben M.

    2017-05-12

    3D bioprinting is one of the most promising technologies in tissue engineering and regenerative medicine. As new printing techniques and bioinks are getting developed, new cellular constructs with high resolution and functionality arise. Different to bioinks of animal, algal or plant origin, synthesized bioinks are proposed as superior biomaterials because their characteristics are fully under control. In this review, we will highlight the potential of synthetic biomaterials to be used as bioinks in 3D bioprinting to produce functionally enhanced matrices.

  13. Hybrid Nanomaterials by Surface Grafting of Synthetic Polypeptides Using N-Carboxyanhydride (NCA) Polymerization.

    Science.gov (United States)

    Borase, Tushar; Heise, Andreas

    2016-07-01

    The interaction of materials with their environment is largely dictated by interfacial phenomena. Polymers are very versatile materials to modulate material interfaces to provide functionality, stability and compatibility. A class of polymers that can close the gap between fully synthetic and natural macromolecules are polypeptides derived from N-carboxyanhydride (NCA) polymerization. Recent advances in using this technique to create biomimetic interfaces and hybrid materials are highlighted, with special emphasis on nanomaterials.

  14. Experimental investigations on separation control and flow structure around a circular cylinder with synthetic jet

    Institute of Scientific and Technical Information of China (English)

    WANG; JinJun; FENG; LiHao; XU; ChaoJun

    2007-01-01

    Circular cylinder separation control and flow structure influenced by the synthetic jet have been experimentally investigated in a water channel. The synthetic jet issues from a slot and ejects toward upstream from the front stagnation point of the cylinder. It has been found that, similar to the traditional synthetic jet which is positioned near the separation point or inside the separation region, the present synthetic jet arrangement constitutes an efficient way to control flow separation of the circular cylinder, but with a different control mechanism. The present synthetic jet leads to an upstream displacement of the front stagnation point and the formation of a vortex pair near both sides of the exit orifice. When ReU based on the synthetic jet average exit orifice velocity is about lower than 43, a closed envelope forms in front of the windward side of the cylinder during the blowing cycle of synthetic jet, which acts as an apparent modification for the cylinder configuration. When ReU is high enough, an open envelope forms upstream of the cylinder, and the flow around the cylinder becomes much energetic. Thus, regardless of ReU, the present synthetic jet can improve separation for flow around a circular cylinder. With regard to the leeward side, as ReU increases, the flow separation region behind the cylinder gradually disappears. The flow over cylinder may be fully attached when the open envelope forms upstream of the cylinder and ReU is greater than 344. Then, the flow past the cylinder will converge near the back stagnation point of the cylinder, where a new vortex pair shedding periodically is generated due to the high shear layer.

  15. Bistatic, above-critical angle scattering measurements of fully buried unexploded ordnance (UXO) and clutter.

    Science.gov (United States)

    Waters, Z J; Simpson, H J; Sarkissian, A; Dey, S; Houston, B H; Bucaro, J A; Yoder, T J

    2012-11-01

    Laboratory grade bistatic scattering measurements are conducted in order to examine the acoustic response of realistic fully buried unexploded ordnance (UXO) from above-critical angle insonification, between 2 and 40 kHz. A 127 mm diameter rocket UXO, a 155 mm diameter artillery shell, a natural rock of approximately the same size, and a cinder block are fully buried in water-saturated medium grained sand (mean grain diameter, 240 μm) at depths of 10 cm below the water-sediment interface. A two-dimensional array of bistatic scattering measurements is generated synthetically by scanning a single hydrophone in steps of 3 cm over a 1 m × 1 m patch directly above the targets at a height of 20 cm above the water-sediment interface. Three-dimensional volumetric acoustic images generated from the return waveforms reveal scattering components attributed to geometric and elastic scattering, as well as multiple-scattering interactions of returns between the sediment-water interface and the buried objects. The far-field target strength of the objects is estimated through extrapolation of the angular spectrum. Agreement is found between experimental data and simulated data generated from a finite-element-based, three-dimensional time-harmonic model (2-25 kHz). Separation of the measured UXO from the clutter objects is demonstrated through exploitation of structural-acoustics-based features.

  16. RSW Fully Tet Medium Cell-Centered Mesh

    Data.gov (United States)

    National Aeronautics and Space Administration — This is the RSW Fully tetrahedral medium cell-centered unstructured grid with a viscous wall. UG3 : Grid File Name = rsw_med_tetcc.b8.ugrid UG3 : Quad Surface Faces=...

  17. Measles: Make Sure Your Child Is Fully Immunized

    Science.gov (United States)

    ... this? Submit What's this? Submit Button Past Emails Measles: Make Sure Your Child is Fully Immunized Language: ... also become infected if they are not protected. Measles in the U.S. From January 2 to March ...

  18. Fully Nonlinear Parabolic Equations and the Dini Condition

    Institute of Scientific and Technical Information of China (English)

    Xiong ZOU; Ya Zhe CHEN

    2002-01-01

    Interior regularity results for viscosity solutions of fully nonlinear uniformly parabolicequations under the Dini condition, which improve and generalize a result due to Kovats, are obtainedby the use of the approximation lemma.

  19. Fully differential cross sections for heavy particle impact ionization

    Energy Technology Data Exchange (ETDEWEB)

    McGovern, M; Walters, H R J [Department of Applied Mathematics and Theoretical Physics, Queen' s University, Belfast BT7 1NN (United Kingdom); Assafrao, D; Mohallem, J R [Laboratorio de Atomos e Moleculas Especiais, Departamento de Fisica, ICEx, Universidade Federal de Minas Gerais, P.O Box 702, 30123-970 Belo Horizonte, MG (Brazil); Whelan, Colm T, E-mail: mmcgovern06@qub.ac.u [Department of Physics, Old Dominion University, Norfolk, VA 23529-0116 (United States)

    2009-11-15

    We describe a procedure for extracting fully differential ionization cross sections from an impact parameter coupled pseudostate treatment of the collision. Some examples from antiproton impact ionization of atomic Hydrogen are given.

  20. ATLAS from Data Research Associates: A Fully Integrated Automation System.

    Science.gov (United States)

    Mellinger, Michael J.

    1987-01-01

    This detailed description of a fully integrated, turnkey library system includes a complete profile of the system (functions, operational characteristics, hardware, operating system, minimum memory and pricing); history of the technologies involved; and descriptions of customer services and availability. (CLB)

  1. RSW Fully Tet Coarse Cell-Centered Mesh

    Data.gov (United States)

    National Aeronautics and Space Administration — This is the RSW fully tetrahedral unstructured mesh dataset for a cell-centered code, including the viscous wind tunnel wall. UG3 : Grid File Name =...

  2. A relativistic correlationless kinetic equation with radiation reaction fully incorporated

    Science.gov (United States)

    Lai, H. M.

    1984-06-01

    The Landau-Lifshitz expression for the Lorentz-Dirac equation is used to derive a relativistic correlationless kinetic equation for a system of electrons with radiation reaction fully incorporated. Various situations and possible applications are discussed.

  3. RSW Fully Tet Cell-Centered Fine Mesh

    Data.gov (United States)

    National Aeronautics and Space Administration — This is the RSW dataset for a fine fully tetrahedral grid designed for a cell-centered unstructured solver. UG3 : Grid File Name = rsw_fine_tetcc.b8.ugrid UG3 : Quad...

  4. Lithium Depletion in Fully Convective Pre-Main Sequence Stars

    CERN Document Server

    Bildsten, L; Matzner, C D; Ushomirsky, G; Bildsten, Lars; Brown, Edward F.; Matzner, Christopher D.; Ushomirsky, Greg

    1996-01-01

    We present an analytic calculation of the thermonuclear depletion of lithium in contracting, fully convective, pre-main sequence stars of mass M 0.08 M_sun) and for constraining the masses of lithium depleted stars.

  5. Differentiability at lateral boundary for fully nonlinear parabolic equations

    Science.gov (United States)

    Ma, Feiyao; Moreira, Diego R.; Wang, Lihe

    2017-09-01

    For fully nonlinear uniformly parabolic equations, the first derivatives regularity of viscosity solutions at lateral boundary is studied under new Dini type conditions for the boundary, which is called Reifenberg Dini conditions and is weaker than usual Dini conditions.

  6. Properties of wideband resonant reflectors under fully conical light incidence

    Science.gov (United States)

    Ko, Yeong Hwan; Niraula, Manoj; Lee, Kyu Jin; Magnusson, Robert

    2016-03-01

    Applying numerical modeling coupled with experiments, we investigate the properties of wideband resonant reflectors under fully conical light incidence. We show that the wave vectors pertinent to resonant first-order diffraction under fully conical mounting vary less with incident angle than those associated with reflectors in classical mounting. Therefore, as the evanescent diffracted waves drive the leaky modes responsible for the resonance effects, fully-conical mounting imbues reflectors with larger angular tolerance than their classical counterparts. We quantify the angular-spectral performance of representative resonant wideband reflectors in conic and classic mounts by numerical calculations with improved spectra found for fully conic incidence. Moreover, these predictions are verified experimentally for wideband reflectors fashioned in crystalline and amorphous silicon in distinct spectral regions spanning the 1200-1600-nm and 1600-2400-nm spectral bands. These results will be useful in various applications demanding wideband reflectors that are efficient and materially sparse.

  7. Properties of wideband resonant reflectors under fully conical light incidence

    CERN Document Server

    Ko, Yeong Hwan; Lee, Kyu Jin; Magnusson, Robert

    2016-01-01

    Applying numerical modeling coupled with experiments, we investigate the properties of wideband resonant reflectors under fully conical light incidence. We show that the wave vectors pertinent to resonant first-order diffraction under fully conical mounting vary less with incident angle than those associated with reflectors in classical mounting. Therefore, as the evanescent diffracted waves drive the leaky modes responsible for the resonance effects, fully-conical mounting imbues reflectors with larger angular tolerance than their classical counterparts. We quantify the angular-spectral performance of representative resonant wideband reflectors in conic and classic mounts by numerical calculations with improved spectra found for fully conic incidence. Moreover, these predictions are verified experimentally for wideband reflectors fashioned in crystalline and amorphous silicon in distinct spectral regions spanning the 1200-1600-nm and 1600-2400-nm spectral bands. These results will be useful in various applic...

  8. Optimum Design of Laminates with Aooroximate Fully Isotrooic Behaviors

    Institute of Scientific and Technical Information of China (English)

    潘星辰

    2001-01-01

    The paper presents an efficient stiffness optimization approach to fully isotropic laminates with approximate isotropic behaviors respect toboth extensional and bending stiffnesses. Based on the Integral global minimization method, the layer orientation angles andthe layer thickness ratios are chosen as design variablesand the lamination parameters are minimized to get theopthnal designs. Example of laminate with approximatefully isotropic behaviors is presented, which has lessthan one-third the number of plies of a fully isotropiclaminate.

  9. Fully-distributed randomized cooperation in wireless sensor networks

    KAUST Repository

    Bader, Ahmed

    2015-01-07

    When marrying randomized distributed space-time coding (RDSTC) to geographical routing, new performance horizons can be created. In order to reach those horizons however, routing protocols must evolve to operate in a fully distributed fashion. In this letter, we expose a technique to construct a fully distributed geographical routing scheme in conjunction with RDSTC. We then demonstrate the performance gains of this novel scheme by comparing it to one of the prominent classical schemes.

  10. Weak Interaction Neutron Production Rates in Fully Ionized Plasmas

    OpenAIRE

    Widom, A.; Swain, J.; Srivastava, Y. N.

    2013-01-01

    Employing the weak interaction reaction wherein a heavy electron is captured by a proton to produce a neutron and a neutrino, the neutron production rate for neutral hydrogen gases and for fully ionized plasmas is computed. Using the Coulomb atomic bound state wave functions of a neutral hydrogen gas, our production rate results are in agreement with recent estimates by Maiani {\\it et al}. Using Coulomb scattering state wave functions for the fully ionized plasma, we find a substantially enha...

  11. Improvement of Synthetic Biology Tools for DNA Editing

    DEFF Research Database (Denmark)

    Cavaleiro, Mafalda

    The unpredictability and complexity of biological systems limit the development of economically efficient bio-based production processes that rely on renewable carbon sources and are essential for biosustainability and environmental protection. Synthetic biology (synbio) aims at making biology...... easier to engineer and addresses these challenges.The ability to systematically construct, modify and tune biological systems from fully characterized biological components, or parts, is crucial to the success of synbio projects. This thesis aims at contributing to standardization and part sharing...... with the development and improvement of DNA editing strategies,compatible with other DNA assembly methodologies, genome engineering and,eventually, automation processes. Expanding and optimizing the synbio toolkit has important applications in pathway optimization for metabolic engineering, design and characterization...

  12. Crystallization by Particle Attachment in Synthetic, Biogenic, and Geologic Environments

    Energy Technology Data Exchange (ETDEWEB)

    De Yoreo, James J.; Gilbert, Pupa U.; Sommerdijk, Nico; Penn, R. Lee; Whitelam, Stephen B.; Joester, Derk; Zhang, Hengzhong; Rimer, Jeffrey D.; Navrotsky, Alexandra; Banfield, Jillian F.; Wallace, Adam F.; Michel, F. M.; Meldrum, Fiona C.; Colfen, Helmut; Dove, Patricia M.

    2015-07-31

    Field and laboratory observations show that crystals commonly form by the addition and attachment of particles that range from multi-ion complexes to fully formed nanoparticles. These non-classical pathways to crystallization are diverse, in contrast to classical models that consider the addition of monomeric chemical species. We review progress toward understanding crystal growth by particle attachment processes and show that multiple pathways result from the interplay of free energy landscapes and reaction dynamics. Much remains unknown about the fundamental aspects; particularly the relationships between solution structure, interfacial forces, and particle motion. Developing a predictive description that connects molecular details to ensemble behavior will require revisiting long-standing interpretations of crystal formation in synthetic systems and patterns of mineralization in natural environments.

  13. Steel desulphurization with synthetic slag

    Directory of Open Access Journals (Sweden)

    Heput, T.

    2007-02-01

    Full Text Available Generally speaking, sulphur is considered a harmful element for steel quality, reason why all the technological steps are being taken in order to eliminate it from the metal bath. This paper deals with the influence of the chemical composition, on the slag quantity and of the bath stirring condition upon the desulphurization process in the casting ladle by treatment with synthetic slag. The experiments were made at an open-hearth plant with the steel tapping in two ladles (the desulphurization was made with synthetic slag at one ladle while the other one was considered standard and at the electric steel plant and for the synthetic slag formation a mix was used, made, according to several receipts, of: lime (50-75%, fluorine (0-17%, bauxite (0-32% and aluminous slag (8-22%. The data were processed in the calculation programs EXCEL and MATLAB, which resulted in a series of correlations between the desulphurization degree and the chemical composition of the slag, respectively the slag quantity both for the charges bubbled with Argon and the unbubbled ones.

    En general, el azufre es considerado un elemento nocivo para la calidad del acero y, por eso, en la práctica, se toman todas las medidas de orden tecnológico para su eliminación del baño metálico. En este trabajo se analiza la influencia de la composición química, de la cantidad de escoria y del estado de agitación del baño sobre el proceso de desulfuración en la cuchara para fundir por tratamiento con escoria sintética. Los experimentos se han realizado en una acería evacuando el acero en dos ollas (en una cuchara se efectuó la desulfuración con escoria sintética y a la otra se consideró como patrón y en un acería eléctrica y para la formación de la escoria sintética se utilizó una mezcla producida según muchas recetas, formada por: cal (50-75%, fluorina (0-17%, bauxita (0-32% y escoria aluminosa (8-22%. Los datos han sido procesados en los programas de c

  14. Synthetic Biology in Health and Disease

    NARCIS (Netherlands)

    Passel, van M.W.J.; Lam, C.M.C.; Martins dos Santos, V.A.P.; Suarez Diez, M.

    2014-01-01

    Synthetic biology draws on the understanding from genetics, biology, chemistry, physics, engineering, and computational sciences to (re-)design and (re-)engineer biological functions. Here we address how synthetic biology can be possibly deployed to promote health and tackle disease. We discuss how

  15. Fast Parametric Beamformer for Synthetic Aperture Imaging

    DEFF Research Database (Denmark)

    Nikolov, Svetoslav; Jensen, Jørgen Arendt; Tomov, Borislav Gueorguiev

    2008-01-01

    . The implementation of the beamformer is optimized with respect to the architecture of a novel synthetic aperture real-time ultrasound scanner (SARUS), in which 4 channels are processed by the same set of field-programmable gate arrays (FPGA). In synthetic transmit aperture imaging, low-resolution images are formed...

  16. Synthetic Biology in Health and Disease

    NARCIS (Netherlands)

    Passel, van M.W.J.; Lam, C.M.C.; Martins dos Santos, V.A.P.; Suarez Diez, M.

    2014-01-01

    Synthetic biology draws on the understanding from genetics, biology, chemistry, physics, engineering, and computational sciences to (re-)design and (re-)engineer biological functions. Here we address how synthetic biology can be possibly deployed to promote health and tackle disease. We discuss how

  17. [Preparation technique of Cremastra appendiculata synthetic seed].

    Science.gov (United States)

    Zhang, Mingsheng; Peng, Siwen; Yang, Xiaorui; Xu, Li

    2009-08-01

    The protocorm-suspension-system of Cremastra appendiculata was founded by liquid-suspension culture. The factors to effect germination rate and seedling conversion rate of C. appendiculata synthetic seeds, such as synthetic coating materials, synthetic endosperm components, storing conditions and germination materials, etc. were studied. The result showed that the germination rate and seedling conversion rate of synthetic seeds were the highest on the MS solid-medium while using 4% sodium alginate + 2% CaCl2 + 2% chitosan as synthetic coating materials, with 1/2 MS liquid-medium + 0.2 mg x L(-1) NAA + 0.1 mg x L(-1) GA3 + 0.5 mg L(-1) BA + 0.4 mg x L(-1) penicillin + 10.0 mg x L(-1) endophyte extract +0.3% carbendazim powder + 0.2% sodium benzoate + 1.0% sucrose as synthetic endosperm. And the germination rate and seedling conversion rate of synthetic seeds could attain to 68% and 65% after 20 days storing at 4 degrees C. The germination rate and seedling conversion rate of synthetic seeds decreased to a great extent with increasing the storing temperature and prolonging storing time.

  18. Synergistic Synthetic Biology: Units in Concert.

    Science.gov (United States)

    Trosset, Jean-Yves; Carbonell, Pablo

    2013-01-01

    Synthetic biology aims at translating the methods and strategies from engineering into biology in order to streamline the design and construction of biological devices through standardized parts. Modular synthetic biology devices are designed by means of an adequate elimination of cross-talk that makes circuits orthogonal and specific. To that end, synthetic constructs need to be adequately optimized through in silico modeling by choosing the right complement of genetic parts and by experimental tuning through directed evolution and craftsmanship. In this review, we consider an additional and complementary tool available to the synthetic biologist for innovative design and successful construction of desired circuit functionalities: biological synergies. Synergy is a prevalent emergent property in biological systems that arises from the concerted action of multiple factors producing an amplification or cancelation effect compared with individual actions alone. Synergies appear in domains as diverse as those involved in chemical and protein activity, polypharmacology, and metabolic pathway complementarity. In conventional synthetic biology designs, synergistic cross-talk between parts and modules is generally attenuated in order to verify their orthogonality. Synergistic interactions, however, can induce emergent behavior that might prove useful for synthetic biology applications, like in functional circuit design, multi-drug treatment, or in sensing and delivery devices. Synergistic design principles are therefore complementary to those coming from orthogonal design and may provide added value to synthetic biology applications. The appropriate modeling, characterization, and design of synergies between biological parts and units will allow the discovery of yet unforeseeable, novel synthetic biology applications.

  19. Synthetic biology: from mainstream to counterculture.

    Science.gov (United States)

    Sleator, Roy D

    2016-09-01

    Existing at the interface of science and engineering, synthetic biology represents a new and emerging field of mainstream biology. However, there also exists a counterculture of Do-It-Yourself biologists, citizen scientists, who have made significant inroads, particularly in the design and development of new tools and techniques. Herein, I review the development and convergence of synthetic biology's mainstream and countercultures.

  20. Metal immobilization in soils using synthetic zeolites

    NARCIS (Netherlands)

    Osté, L.A.; Lexmond, T.M.; Riemsdijk, van W.H.

    2002-01-01

    In situ immobilization of heavy metals in contaminated soils is a technique to improve soil quality. Synthetic zeolites are potentially useful additives to bind heavy metals. This study selected the most effective zeolite in cadmium and zinc binding out of six synthetic zeolites (mordenite-type, fau

  1. Synthetic biology: programming cells for biomedical applications.

    Science.gov (United States)

    Hörner, Maximilian; Reischmann, Nadine; Weber, Wilfried

    2012-01-01

    The emerging field of synthetic biology is a novel biological discipline at the interface between traditional biology, chemistry, and engineering sciences. Synthetic biology aims at the rational design of complex synthetic biological devices and systems with desired properties by combining compatible, modular biological parts in a systematic manner. While the first engineered systems were mainly proof-of-principle studies to demonstrate the power of the modular engineering approach of synthetic biology, subsequent systems focus on applications in the health, environmental, and energy sectors. This review describes recent approaches for biomedical applications that were developed along the synthetic biology design hierarchy, at the level of individual parts, of devices, and of complex multicellular systems. It describes how synthetic biological parts can be used for the synthesis of drug-delivery tools, how synthetic biological devices can facilitate the discovery of novel drugs, and how multicellular synthetic ecosystems can give insight into population dynamics of parasites and hosts. These examples demonstrate how this new discipline could contribute to novel solutions in the biopharmaceutical industry.

  2. Metal immobilization in soils using synthetic zeolites

    NARCIS (Netherlands)

    Osté, L.A.; Lexmond, T.M.; Riemsdijk, van W.H.

    2002-01-01

    In situ immobilization of heavy metals in contaminated soils is a technique to improve soil quality. Synthetic zeolites are potentially useful additives to bind heavy metals. This study selected the most effective zeolite in cadmium and zinc binding out of six synthetic zeolites (mordenite-type,

  3. Applications of synthetic carbohydrates to chemical biology.

    Science.gov (United States)

    Lepenies, Bernd; Yin, Jian; Seeberger, Peter H

    2010-06-01

    Access to synthetic carbohydrates is an urgent need for the development of carbohydrate-based drugs, vaccines, adjuvants as well as novel drug delivery systems. Besides traditional synthesis in solution, synthetic carbohydrates have been generated by chemoenzymatic methods as well as automated solid-phase synthesis. Synthetic oligosaccharides have proven to be useful for identifying ligands of carbohydrate-binding proteins such as C-type lectins and siglecs using glycan arrays. Furthermore, glyconanoparticles and glycodendrimers have been used for specific targeting of lectins of the immune system such as selectins, DC-SIGN, and CD22. This review focuses on how diverse carbohydrate structures can be synthetically derived and highlights the benefit of synthetic carbohydrates for glycobiology.

  4. Mammalian synthetic biology: emerging medical applications.

    Science.gov (United States)

    Kis, Zoltán; Pereira, Hugo Sant'Ana; Homma, Takayuki; Pedrigi, Ryan M; Krams, Rob

    2015-05-06

    In this review, we discuss new emerging medical applications of the rapidly evolving field of mammalian synthetic biology. We start with simple mammalian synthetic biological components and move towards more complex and therapy-oriented gene circuits. A comprehensive list of ON-OFF switches, categorized into transcriptional, post-transcriptional, translational and post-translational, is presented in the first sections. Subsequently, Boolean logic gates, synthetic mammalian oscillators and toggle switches will be described. Several synthetic gene networks are further reviewed in the medical applications section, including cancer therapy gene circuits, immuno-regulatory networks, among others. The final sections focus on the applicability of synthetic gene networks to drug discovery, drug delivery, receptor-activating gene circuits and mammalian biomanufacturing processes. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

  5. Synthetic diagnostics platform for fusion plasmas (invited)

    Energy Technology Data Exchange (ETDEWEB)

    Shi, L., E-mail: lshi@pppl.gov; Valeo, E. J.; Tobias, B. J.; Kramer, G. J.; Hausammann, L.; Tang, W. M. [Princeton Plasma Physics Laboratory, Princeton, New Jersey 08540 (United States); Chen, M. [Department of Mechanical and Aerospace Engineering, University of California, Davis, California 95616 (United States)

    2016-11-15

    A Synthetic Diagnostics Platform (SDP) for fusion plasmas has been developed which provides state of the art synthetic reflectometry, beam emission spectroscopy, and Electron Cyclotron Emission (ECE) diagnostics. Interfaces to the plasma simulation codes GTC, XGC-1, GTS, and M3D-C{sup 1} are provided, enabling detailed validation of these codes. In this paper, we give an overview of SDP’s capabilities, and introduce the synthetic diagnostic modules. A recently developed synthetic ECE Imaging module which self-consistently includes refraction, diffraction, emission, and absorption effects is discussed in detail. Its capabilities are demonstrated on two model plasmas. The importance of synthetic diagnostics in validation is shown by applying the SDP to M3D-C{sup 1} output and comparing it with measurements from an edge harmonic oscillation mode on DIII-D.

  6. Wind energy applications of synthetic aperture radar

    Energy Technology Data Exchange (ETDEWEB)

    Bruun Christiansen, M.

    2006-11-15

    Synthetic aperture radars (SAR), mounted on satellites or aircraft, have proven useful for ocean wind mapping. Wind speeds at the height 10 m may be retrieved from measurements of radar backscatter using empirical model functions. The resulting wind fields are valuable in offshore wind energy planning as a supplement to on site measurements, which are costly and sparse, and model wind fields, which are not fully validated. Two applications of SAR measurements in offshore wind energy planning are addressed here: the study of wind farm wake effects and the potential of using SAR winds in offshore wind resource assessment. Firstly, wind wakes behind two large offshore wind farms in Denmark Horns Rev and Nysted are identified. A region of reduced wind speed is found downstream of both wind farms from the SAR wind fields. The wake extent and magnitude depends on the wind speed, the atmospheric stability, and the fraction of turbines operating. Wind farm wake effects are detected up to 20 km downwind of the last turbine. This distance is longer than predicted by state-of-the art wake models. Wake losses are typically 10-20% near the wind farms. Secondly, the potential of using SAR wind maps in offshore wind resource assessment is investigated. The resource assessment is made through Weibull fitting to frequency observations of wind speed and requires at least 100 satellite observations per year for a given site of interest. Predictions of the energy density are very sensitive to the wind speed and the highest possible accuracy on SAR wind retrievals is therefore sought. A 1.1 m s{sup -1} deviation on the mean wind speed is found through comparison with mast measurements at Horns Rev. The accuracy on mean wind speeds and energy densities found from satellite measurements varies with different empirical model functions. Additional uncertainties are introduced by the infrequent satellite sampling at fixed times of the day. The accuracy on satellite based wind resource

  7. Liver Transplantation Utilizing Mixed Biologic and Synthetic Arterial Conduits

    Directory of Open Access Journals (Sweden)

    Marcio F. Chedid

    2016-01-01

    Full Text Available Arterial conduits are necessary in nearly 5% of all liver transplants and are usually constructed utilizing segments of donor iliac artery. However, available segments of donor iliac artery may not be lengthy enough or may not possess enough quality to enable its inclusion in the conduit. Although there are few reports of arterial conduits constructed solely utilizing prosthetic material, no previous reports of conduits composed of a segment of donor iliac artery and prosthetic material (mixed biologic and synthetic arterial conduits were found in the medial literature to date. Two cases reporting successful outcomes after creation of mixed biologic and prosthetic arterial conduits are outlined in this report. Reason for creation of conduits was complete intimal dissection of the recipient’s hepatic artery in both cases. In both cases, available segments of donor iliac artery were not lengthy enough to bridge infrarenal aorta to porta hepatis. Both patients have patent conduits and normally functioning liver allografts, respectively, at 4 and 31 months after transplant. Mixed biologic and synthetic arterial conduits constitute a viable technical option and may offer potential advantages over fully prosthetic arterial conduits.

  8. Synthetic Landau levels for photons.

    Science.gov (United States)

    Schine, Nathan; Ryou, Albert; Gromov, Andrey; Sommer, Ariel; Simon, Jonathan

    2016-06-30

    Synthetic photonic materials are an emerging platform for exploring the interface between microscopic quantum dynamics and macroscopic material properties. Photons experiencing a Lorentz force develop handedness, providing opportunities to study quantum Hall physics and topological quantum science. Here we present an experimental realization of a magnetic field for continuum photons. We trap optical photons in a multimode ring resonator to make a two-dimensional gas of massive bosons, and then employ a non-planar geometry to induce an image rotation on each round-trip. This results in photonic Coriolis/Lorentz and centrifugal forces and so realizes the Fock–Darwin Hamiltonian for photons in a magnetic field and harmonic trap. Using spatial- and energy-resolved spectroscopy, we track the resulting photonic eigenstates as radial trapping is reduced, finally observing a photonic Landau level at degeneracy. To circumvent the challenge of trap instability at the centrifugal limit, we constrain the photons to move on a cone. Spectroscopic probes demonstrate flat space (zero curvature) away from the cone tip. At the cone tip, we observe that spatial curvature increases the local density of states, and we measure fractional state number excess consistent with the Wen–Zee theory, providing an experimental test of this theory of electrons in both a magnetic field and curved space. This work opens the door to exploration of the interplay of geometry and topology, and in conjunction with Rydberg electromagnetically induced transparency, enables studies of photonic fractional quantum Hall fluids and direct detection of anyons.

  9. Synthetic Landau levels for photons

    Science.gov (United States)

    Schine, Nathan; Ryou, Albert; Gromov, Andrey; Sommer, Ariel; Simon, Jonathan

    2016-06-01

    Synthetic photonic materials are an emerging platform for exploring the interface between microscopic quantum dynamics and macroscopic material properties. Photons experiencing a Lorentz force develop handedness, providing opportunities to study quantum Hall physics and topological quantum science. Here we present an experimental realization of a magnetic field for continuum photons. We trap optical photons in a multimode ring resonator to make a two-dimensional gas of massive bosons, and then employ a non-planar geometry to induce an image rotation on each round-trip. This results in photonic Coriolis/Lorentz and centrifugal forces and so realizes the Fock-Darwin Hamiltonian for photons in a magnetic field and harmonic trap. Using spatial- and energy-resolved spectroscopy, we track the resulting photonic eigenstates as radial trapping is reduced, finally observing a photonic Landau level at degeneracy. To circumvent the challenge of trap instability at the centrifugal limit, we constrain the photons to move on a cone. Spectroscopic probes demonstrate flat space (zero curvature) away from the cone tip. At the cone tip, we observe that spatial curvature increases the local density of states, and we measure fractional state number excess consistent with the Wen-Zee theory, providing an experimental test of this theory of electrons in both a magnetic field and curved space. This work opens the door to exploration of the interplay of geometry and topology, and in conjunction with Rydberg electromagnetically induced transparency, enables studies of photonic fractional quantum Hall fluids and direct detection of anyons.

  10. Synthetic polymers for solar harvesting.

    Science.gov (United States)

    Ghiggino, Kenneth P; Bell, Toby D M; Hooley, Emma N

    2012-01-01

    Synthetic polymers incorporating appropriate chromophores can act as light harvesting antennae for artificial photosynthetic systems. The photophysical processes occurring in a polymer based on phenylene vinylene have been investigated at the single chain level and in bulk solution to study energy transfer processes. Most single chains of an alternating copolymer of 2-methoxy-5-(2'-ethylhexyloxy)-1,4-phenylene vinylene and 1,4-phenylene vinylene (alt-co-MEH-PPV) dispersed in a transparent polymer matrix act as single chromophore emitters demonstrating that energy transfer is an efficient process in these polymers. However for individual polymer chains there are fluctuations in emission intensity ('blinking') and shifts in emission spectra, decay lifetimes and emission dipole orientation occurring on a time-scale of tens of seconds. Fluorescence blinking also occurs on a sub-millisecond time-scale and follows exponential kinetics, whereas the longer blinking is better described by a power law. These observations can be interpreted as arising from environmental relaxation processes and/or changes in the emitter and demonstrate the wide distribution of photophysical behaviours that can be observed among the individual molecules of a polymer sample. The relevance of these studies to the application of polymer materials for solar harvesting is highlighted.

  11. Nanostructures from Synthetic Genetic Polymers.

    Science.gov (United States)

    Taylor, Alexander I; Beuron, Fabienne; Peak-Chew, Sew-Yeu; Morris, Edward P; Herdewijn, Piet; Holliger, Philipp

    2016-06-16

    Nanoscale objects of increasing complexity can be constructed from DNA or RNA. However, the scope of potential applications could be enhanced by expanding beyond the moderate chemical diversity of natural nucleic acids. Here, we explore the construction of nano-objects made entirely from alternative building blocks: synthetic genetic polymers not found in nature, also called xeno nucleic acids (XNAs). Specifically, we describe assembly of 70 kDa tetrahedra elaborated in four different XNA chemistries (2'-fluro-2'-deoxy-ribofuranose nucleic acid (2'F-RNA), 2'-fluoroarabino nucleic acids (FANA), hexitol nucleic acids (HNA), and cyclohexene nucleic acids (CeNA)), as well as mixed designs, and a ∼600 kDa all-FANA octahedron, visualised by electron microscopy. Our results extend the chemical scope for programmable nanostructure assembly, with implications for the design of nano-objects and materials with an expanded range of structural and physicochemical properties, including enhanced biostability. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  12. The major synthetic evolutionary transitions

    Science.gov (United States)

    Solé, Ricard

    2016-01-01

    Evolution is marked by well-defined events involving profound innovations that are known as ‘major evolutionary transitions'. They involve the integration of autonomous elements into a new, higher-level organization whereby the former isolated units interact in novel ways, losing their original autonomy. All major transitions, which include the origin of life, cells, multicellular systems, societies or language (among other examples), took place millions of years ago. Are these transitions unique, rare events? Have they instead universal traits that make them almost inevitable when the right pieces are in place? Are there general laws of evolutionary innovation? In order to approach this problem under a novel perspective, we argue that a parallel class of evolutionary transitions can be explored involving the use of artificial evolutionary experiments where alternative paths to innovation can be explored. These ‘synthetic’ transitions include, for example, the artificial evolution of multicellular systems or the emergence of language in evolved communicating robots. These alternative scenarios could help us to understand the underlying laws that predate the rise of major innovations and the possibility for general laws of evolved complexity. Several key examples and theoretical approaches are summarized and future challenges are outlined. This article is part of the themed issue ‘The major synthetic evolutionary transitions’. PMID:27431528

  13. Characterizing the infrared spectra of small, neutral, fully dehydrogenated PAHs

    CERN Document Server

    Mackie, C J; Bauschlicher, C W; Cami, J

    2014-01-01

    We present the results of a computational study to investigate the infrared spectroscopic properties of a large number of polycyclic aromatic hydrocarbon (PAH) molecules and their fully dehydrogenated counterparts. We constructed a database of fully optimized geometries for PAHs that is complete for eight or fewer fused benzene rings, thus containing 1550 PAHs and 805 fully dehydrogenated aromatics. A large fraction of the species in our database have clearly non-planar or curved geometries. For each species, we determined the frequencies and intensities of their normal modes using density functional theory calculations. Whereas most PAH spectra are fairly similar, the spectra of fully dehydrogenated aromatics are much more diverse. Nevertheless, these fully dehydrogenated species show characteristic emission features at 5.2$\\mu$m, 5.5$\\mu$m and 10.6$\\mu$m; at longer wavelengths, there is a forest of emission features in the 16--30$\\mu$m range that appears as a structured continuum, but with a clear peak cent...

  14. Synthetic biology: mapping the scientific landscape.

    Science.gov (United States)

    Oldham, Paul; Hall, Stephen; Burton, Geoff

    2012-01-01

    This article uses data from Thomson Reuters Web of Science to map and analyse the scientific landscape for synthetic biology. The article draws on recent advances in data visualisation and analytics with the aim of informing upcoming international policy debates on the governance of synthetic biology by the Subsidiary Body on Scientific, Technical and Technological Advice (SBSTTA) of the United Nations Convention on Biological Diversity. We use mapping techniques to identify how synthetic biology can best be understood and the range of institutions, researchers and funding agencies involved. Debates under the Convention are likely to focus on a possible moratorium on the field release of synthetic organisms, cells or genomes. Based on the empirical evidence we propose that guidance could be provided to funding agencies to respect the letter and spirit of the Convention on Biological Diversity in making research investments. Building on the recommendations of the United States Presidential Commission for the Study of Bioethical Issues we demonstrate that it is possible to promote independent and transparent monitoring of developments in synthetic biology using modern information tools. In particular, public and policy understanding and engagement with synthetic biology can be enhanced through the use of online interactive tools. As a step forward in this process we make existing data on the scientific literature on synthetic biology available in an online interactive workbook so that researchers, policy makers and civil society can explore the data and draw conclusions for themselves.

  15. Synthetic biology: mapping the scientific landscape.

    Directory of Open Access Journals (Sweden)

    Paul Oldham

    Full Text Available This article uses data from Thomson Reuters Web of Science to map and analyse the scientific landscape for synthetic biology. The article draws on recent advances in data visualisation and analytics with the aim of informing upcoming international policy debates on the governance of synthetic biology by the Subsidiary Body on Scientific, Technical and Technological Advice (SBSTTA of the United Nations Convention on Biological Diversity. We use mapping techniques to identify how synthetic biology can best be understood and the range of institutions, researchers and funding agencies involved. Debates under the Convention are likely to focus on a possible moratorium on the field release of synthetic organisms, cells or genomes. Based on the empirical evidence we propose that guidance could be provided to funding agencies to respect the letter and spirit of the Convention on Biological Diversity in making research investments. Building on the recommendations of the United States Presidential Commission for the Study of Bioethical Issues we demonstrate that it is possible to promote independent and transparent monitoring of developments in synthetic biology using modern information tools. In particular, public and policy understanding and engagement with synthetic biology can be enhanced through the use of online interactive tools. As a step forward in this process we make existing data on the scientific literature on synthetic biology available in an online interactive workbook so that researchers, policy makers and civil society can explore the data and draw conclusions for themselves.

  16. Synthetic Biology: Mapping the Scientific Landscape

    Science.gov (United States)

    Oldham, Paul; Hall, Stephen; Burton, Geoff

    2012-01-01

    This article uses data from Thomson Reuters Web of Science to map and analyse the scientific landscape for synthetic biology. The article draws on recent advances in data visualisation and analytics with the aim of informing upcoming international policy debates on the governance of synthetic biology by the Subsidiary Body on Scientific, Technical and Technological Advice (SBSTTA) of the United Nations Convention on Biological Diversity. We use mapping techniques to identify how synthetic biology can best be understood and the range of institutions, researchers and funding agencies involved. Debates under the Convention are likely to focus on a possible moratorium on the field release of synthetic organisms, cells or genomes. Based on the empirical evidence we propose that guidance could be provided to funding agencies to respect the letter and spirit of the Convention on Biological Diversity in making research investments. Building on the recommendations of the United States Presidential Commission for the Study of Bioethical Issues we demonstrate that it is possible to promote independent and transparent monitoring of developments in synthetic biology using modern information tools. In particular, public and policy understanding and engagement with synthetic biology can be enhanced through the use of online interactive tools. As a step forward in this process we make existing data on the scientific literature on synthetic biology available in an online interactive workbook so that researchers, policy makers and civil society can explore the data and draw conclusions for themselves. PMID:22539946

  17. Preparation and evaluation of unimolecular pentavalent and hexavalent antigenic constructs targeting prostate and breast cancer: a synthetic route to anticancer vaccine candidates.

    Science.gov (United States)

    Ragupathi, Govind; Koide, Fusataka; Livingston, Philip O; Cho, Young Shin; Endo, Atsushi; Wan, Qian; Spassova, Maria K; Keding, Stacy J; Allen, Jennifer; Ouerfelli, Ouathek; Wilson, Rebecca M; Danishefsky, Samuel J

    2006-03-01

    Several novel, fully synthetic, carbohydrate-based antitumor vaccines have been assembled. Each construct consists of multiple cancer-related antigens displayed on a single polypeptide backbone. Recent advances in synthetic methodology have allowed for the incorporation of a complex oligosaccharide terminating in a sialic acid residue (i.e., GM2) as one of the carbohydrate antigens. Details of the vaccine synthesis as well as the results of preliminary immunological investigations are described herein.

  18. Fully kinetic simulations of megajoule-scale dense plasma focus

    Energy Technology Data Exchange (ETDEWEB)

    Schmidt, A.; Link, A.; Tang, V.; Halvorson, C.; May, M. [Lawrence Livermore National Laboratory, Livermore California 94550 (United States); Welch, D. [Voss Scientific, LLC, Albuquerque, New Mexico 87108 (United States); Meehan, B. T.; Hagen, E. C. [National Security Technologies, LLC, Las Vegas, Nevada 89030 (United States)

    2014-10-15

    Dense plasma focus (DPF) Z-pinch devices are sources of copious high energy electrons and ions, x-rays, and neutrons. Megajoule-scale DPFs can generate 10{sup 12} neutrons per pulse in deuterium gas through a combination of thermonuclear and beam-target fusion. However, the details of the neutron production are not fully understood and past optimization efforts of these devices have been largely empirical. Previously, we reported on the first fully kinetic simulations of a kilojoule-scale DPF and demonstrated that both kinetic ions and kinetic electrons are needed to reproduce experimentally observed features, such as charged-particle beam formation and anomalous resistivity. Here, we present the first fully kinetic simulation of a MegaJoule DPF, with predicted ion and neutron spectra, neutron anisotropy, neutron spot size, and time history of neutron production. The total yield predicted by the simulation is in agreement with measured values, validating the kinetic model in a second energy regime.

  19. The Fully-Differential Quark Beam Function at NNLO

    CERN Document Server

    Gaunt, Jonathan R

    2014-01-01

    We present the first calculation of a fully-unintegrated parton distribution (beam function) at next-to-next-to-leading order (NNLO). We obtain the fully-differential beam function for quark-initiated processes by matching it onto standard parton distribution functions (PDFs) at two loops. The fully-differential beam function is a universal ingredient in resummed predictions of observables probing both the virtuality as well as the transverse momentum of the incoming quark in addition to its usual longitudinal momentum fraction. For such double-differential observables our result is an important contribution to the resummation of large logarithms related to collinear initial-state radiation (ISR) through N3LL.

  20. Fully nonlocal, monogamous and random genuinely multipartite quantum correlations

    CERN Document Server

    Aolita, Leandro; Cabello, Adán; Acín, Antonio

    2011-01-01

    Local measurements on bipartite maximally entangled states can yield correlations that are maximally nonlocal, monogamous, and associated to fully random outcomes. This makes these states ideal for bipartite cryptographic tasks. Genuine-multipartite nonlocality constitutes a stronger notion of nonlocality that appears in the multipartite case. Maximal genuine-multipartite nonlocality, monogamy and full random outcomes are thus highly desired properties for multipartite correlations in intrinsically genuine-multipartite cryptographic scenarios. We prove that local measurements on Greenberger-Horne-Zeilinger states, for all local dimension and number of parts, can produce correlations that are fully genuine-multipartite nonlocal, monogamous and with fully random outcomes. A key ingredient in our proof is a multipartite chained Bell inequality detecting genuine-multipartite nonlocality, which we introduce. Finally, we discuss the applications of our results for intrinsically genuine-multipartite cryptographic pr...

  1. Fully simulatable quantum-secure coin-flipping and applications

    DEFF Research Database (Denmark)

    Lunemann, Carolin; Nielsen, Jesper Buus

    2011-01-01

    We propose a coin-flip protocol which yields a string of strong, random coins and is fully simulatable against poly-sized quantum adversaries on both sides. It can be implemented with quantum-computational security without any set-up assumptions, since our construction only assumes mixed commitment...... schemes which we show how to construct in the given setting. We then show that the interactive generation of random coins at the beginning or during outer protocols allows for quantum-secure realizations of classical schemes, again without any set-up assumptions. As example applications we discuss quantum...... zero-knowledge proofs of knowledge and quantum-secure two-party function evaluation. Both applications assume only fully simulatable coin-flipping and mixed commitments. Since our framework allows to construct fully simulatable coin-flipping from mixed commitments, this in particular shows that mixed...

  2. Defining the Synthetic Biology Supply Chain

    Energy Technology Data Exchange (ETDEWEB)

    Frazar, Sarah L.; Hund, Gretchen; Bonheyo, George T.; Diggans, James; Bartholomew, Rachel A.; Gehrig, Lindsey K.; Greaves, Mark T.

    2017-08-03

    In this article, a team of experts in synthetic biology, data analytics, and national security describe the overall supply chain surrounding synthetic biology. The team analyzes selected interactions within that network to better understand the risks raised by synthetic biology and identifies opportunities for risk mitigation. To introduce the concept, the article will briefly describe how an understanding of supply chains has been important in promoting nuclear nonproliferation objectives. The article concludes by assessing the structure and networks identified in the supply chains to reveal potential opportunities for future biodefense research and development; options for additional information exchange; and means to interdict, detect, or deter suspicious activity.

  3. Structural Antitumoral Activity Relationships of Synthetic Chalcones

    Science.gov (United States)

    Echeverria, Cesar; Santibañez, Juan Francisco; Donoso-Tauda, Oscar; Escobar, Carlos A.; Ramirez-Tagle, Rodrigo

    2009-01-01

    Relationships between the structural characteristic of synthetic chalcones and their antitumoral activity were studied. Treatment of HepG2 cells for 24 h with synthetic 2’-hydroxychalcones resulted in apoptosis induction and dose-dependent inhibition of cell proliferation. The calculated reactivity indexes and the adiabatic electron affinities using the DFT method including solvent effects, suggest a structure-activity relationship between the Chalcones structure and the apoptosis in HepG2 cells. The absence of methoxy substituents in the B ring of synthetic 2’-hydroxychalcones, showed the mayor structure-activity pattern along the series. PMID:19333443

  4. Synthetic models of distributed memory parallel programs

    Energy Technology Data Exchange (ETDEWEB)

    Poplawski, D.A. (Michigan Technological Univ., Houghton, MI (USA). Dept. of Computer Science)

    1990-09-01

    This paper deals with the construction and use of simple synthetic programs that model the behavior of more complex, real parallel programs. Synthetic programs can be used in many ways: to construct an easily ported suite of benchmark programs, to experiment with alternate parallel implementations of a program without actually writing them, and to predict the behavior and performance of an algorithm on a new or hypothetical machine. Synthetic programs are constructed easily from scratch, from existing programs, and can even be constructed using nothing but information obtained from traces of the real program's execution.

  5. Grand challenges in space synthetic biology.

    Science.gov (United States)

    Menezes, Amor A; Montague, Michael G; Cumbers, John; Hogan, John A; Arkin, Adam P

    2015-12-06

    Space synthetic biology is a branch of biotechnology dedicated to engineering biological systems for space exploration, industry and science. There is significant public and private interest in designing robust and reliable organisms that can assist on long-duration astronaut missions. Recent work has also demonstrated that such synthetic biology is a feasible payload minimization and life support approach as well. This article identifies the challenges and opportunities that lie ahead in the field of space synthetic biology, while highlighting relevant progress. It also outlines anticipated broader benefits from this field, because space engineering advances will drive technological innovation on Earth.

  6. Practical Applications of Synthetic Aperture Imaging

    DEFF Research Database (Denmark)

    Nikolov, Svetoslav Ivanov; Kortbek, Jacob; Jensen, Jørgen Arendt

    2010-01-01

    Synthetic aperture imaging has been a focus of research for almost 3 decades. The research carried out at the Center for Fast Ultrasound Imaging has demonstrated that synthetic aperture focusing not only can be used in-vivo, but that it also yields superior B-mode and blood flow images. In the last......, and multiple angle flash imaging are just a few of the names used to describe the commercial implementations of synthetic aperture focusing. Although they sound like different algorithms, they are the same in their core, as revealed in this paper....

  7. Synthetic Biology: game changer in intelectual property

    Directory of Open Access Journals (Sweden)

    Laurens Landeweerd

    2016-12-01

    Full Text Available Synthetic biology can be considered a game changer that plays an important role in the current NBIC, or BINC convergence of nano-, bio-, info and cognitive sciences. Although most synthetic biology experts are unaware of it, the field appeals to the imagination in its adherence to targets that were usually associated with premodern alchemist science. This paper elaborates several aspects of synthetic biology as well as its consequences for long held notions of intellectual property and the ontological categories of scientific discovery on the one hand and engineering on the other, the distinction between natural and artificial, the grown and the made.

  8. Enabling plant synthetic biology through genome engineering.

    Science.gov (United States)

    Baltes, Nicholas J; Voytas, Daniel F

    2015-02-01

    Synthetic biology seeks to create new biological systems, including user-designed plants and plant cells. These systems can be employed for a variety of purposes, ranging from producing compounds of industrial or therapeutic value, to reducing crop losses by altering cellular responses to pathogens or climate change. To realize the full potential of plant synthetic biology, techniques are required that provide control over the genetic code - enabling targeted modifications to DNA sequences within living plant cells. Such control is now within reach owing to recent advances in the use of sequence-specific nucleases to precisely engineer genomes. We discuss here the enormous potential provided by genome engineering for plant synthetic biology.

  9. Research on anisotropic parameters by synthetic seismogram

    Institute of Scientific and Technical Information of China (English)

    FAN Xiao-ping; LI Qing-he; YANG Cong-jie

    2005-01-01

    ased on the extensive-dilatancy anisotropy theory, the method of synthetic seismogram is used to estimate the anisotropic parameters. The advantages of the method lie in that it avoids the singularity resolution and saves calculation time of computer by using the eigenvalue and eigenvector analytical expressions of Christoffel equation, at the same time, the result is tested by coherence function. The test result reveals there exists a fine linear relation between original records and synthetic records, indicating the anisotropic parameters estimated by synthetic seismogram can reflect and describe the anisotropic characteristics of the given region medium.

  10. A Convenient Synthetic Method of Metal Dendritic Porphyrins

    Institute of Scientific and Technical Information of China (English)

    Wen Bin CUI; Jie ZHOU; Lei CHEN; Xiao Bin DENG; Chun GUO

    2006-01-01

    A convenient synthetic method of metal dendritic porphyrins through the convergent synthetic strategy is described. The porphyrin core were linked with the synthetic fragments by forming ether or ester bonds to give five target compounds were prepared.

  11. Fully Implicit Numerical Methods for the Baroclinic Primitive Equations

    Science.gov (United States)

    Cohn, S. E.; Isaacson, E.

    1984-01-01

    A fully implicit code was developed to solve the three-dimensional primitive equations of atmospheric flow. The scheme is second order accurate in time and fourth order accurate in the horizontal and vertical directions. Furthermore, as a result of being fully implicit, the time step is not restricted by the mesh spacing near the poles, nor by the speed of inertia-gravity waves. Rather, the time step, deltat is determined simply by the requirement that it be small enough to adequately resolve the atmospheric flow of interest. The accuracy and efficiency of current models for fine grids should be significantly improved.

  12. Turning a remotely controllable observatory into a fully autonomous system

    Science.gov (United States)

    Swindell, Scott; Johnson, Chris; Gabor, Paul; Zareba, Grzegorz; Kubánek, Petr; Prouza, Michael

    2014-08-01

    We describe a complex process needed to turn an existing, old, operational observatory - The Steward Observatory's 61" Kuiper Telescope - into a fully autonomous system, which observers without an observer. For this purpose, we employed RTS2,1 an open sourced, Linux based observatory control system, together with other open sourced programs and tools (GNU compilers, Python language for scripting, JQuery UI for Web user interface). This presentation provides a guide with time estimates needed for a newcomers to the field to handle such challenging tasks, as fully autonomous observatory operations.

  13. Design Study of Fully Superconducting Wind Turbine Generators

    DEFF Research Database (Denmark)

    Song, Xiaowei (Andy); Mijatovic, Nenad; Jensen, Bogi Bech

    2015-01-01

    In this paper, two fully superconducting generators employing MgB2 armature winding, with YBCO and MgB2 field winding respectively, are presented and analyzed. The ac loss in armature winding is estimated, and a simple comparative study is carried out. The results show that both electromagnetic...... designs for fully superconducting generators are promising with respect to the power density. However, the cost of removing ac loss in armature winding is as high as $900 000. It is also noted that with the current price of YBCO tape, the generator employing MgB 2 field winding would have lower cost....

  14. Weak Interaction Neutron Production Rates in Fully Ionized Plasmas

    CERN Document Server

    Widom, A; Srivastava, Y N

    2013-01-01

    Employing the weak interaction reaction wherein a heavy electron is captured by a proton to produce a neutron and a neutrino, the neutron production rate for neutral hydrogen gases and for fully ionized plasmas is computed. Using the Coulomb atomic bound state wave functions of a neutral hydrogen gas, our production rate results are in agreement with recent estimates by Maiani {\\it et al}. Using Coulomb scattering state wave functions for the fully ionized plasma, we find a substantially enhanced neutron production rate. The scattering wave function should replace the bound state wave function for estimates of the enhanced neutron production rate on water plasma drenched cathodes of chemical cells.

  15. [Progress in synthetic biology of "973 Funding Program" in China].

    Science.gov (United States)

    Chen, Guoqiang; Wang, Ying

    2015-06-01

    This paper reviews progresses made in China from 2011 in areas of "Synthetic Biology" supported by State Basic Research 973 Program. Till the end of 2014, 9 "synthetic biology" projects have been initiated with emphasis on "microbial manufactures" with the 973 Funding Program. Combined with the very recent launch of one project on "mammalian cell synthetic biology" and another on "plant synthetic biology", Chinese "synthetic biology" research reflects its focus on "manufactures" while not giving up efforts on "synthetic biology" of complex systems.

  16. Knowledge-making distinctions in synthetic biology.

    Science.gov (United States)

    O'Malley, Maureen A; Powell, Alexander; Davies, Jonathan F; Calvert, Jane

    2008-01-01

    Synthetic biology is an increasingly high-profile area of research that can be understood as encompassing three broad approaches towards the synthesis of living systems: DNA-based device construction, genome-driven cell engineering and protocell creation. Each approach is characterized by different aims, methods and constructs, in addition to a range of positions on intellectual property and regulatory regimes. We identify subtle but important differences between the schools in relation to their treatments of genetic determinism, cellular context and complexity. These distinctions tie into two broader issues that define synthetic biology: the relationships between biology and engineering, and between synthesis and analysis. These themes also illuminate synthetic biology's connections to genetic and other forms of biological engineering, as well as to systems biology. We suggest that all these knowledge-making distinctions in synthetic biology raise fundamental questions about the nature of biological investigation and its relationship to the construction of biological components and systems.

  17. Synthetic analogs of bacterial quorum sensors

    Energy Technology Data Exchange (ETDEWEB)

    Iyer, Rashi (Los Alamos, NM); Ganguly, Kumkum (Los Alamos, NM); Silks, Louis A. (Los Alamos, NM)

    2011-12-06

    Bacterial quorum-sensing molecule analogs having the following structures: ##STR00001## and methods of reducing bacterial pathogenicity, comprising providing a biological system comprising pathogenic bacteria which produce natural quorum-sensing molecule; providing a synthetic bacterial quorum-sensing molecule having the above structures and introducing the synthetic quorum-sensing molecule into the biological system comprising pathogenic bacteria. Further is provided a method of targeted delivery of an antibiotic, comprising providing a synthetic quorum-sensing molecule; chemically linking the synthetic quorum-sensing molecule to an antibiotic to produce a quorum-sensing molecule-antibiotic conjugate; and introducing the conjugate into a biological system comprising pathogenic bacteria susceptible to the antibiotic.

  18. The emerging world of synthetic genetics.

    Science.gov (United States)

    Chaput, John C; Yu, Hanyang; Zhang, Su

    2012-11-21

    For over 20 years, laboratories around the world have been applying the principles of Darwinian evolution to isolate DNA and RNA molecules with specific ligand-binding or catalytic activities. This area of synthetic biology, commonly referred to as in vitro genetics, is made possible by the availability of natural polymerases that can replicate genetic information in the laboratory. Moving beyond natural nucleic acids requires organic chemistry to synthesize unnatural analogues and polymerase engineering to create enzymes that recognize artificial substrates. Progress in both of these areas has led to the emerging field of synthetic genetics, which explores the structural and functional properties of synthetic genetic polymers by in vitro evolution. This review examines recent advances in the Darwinian evolution of artificial genetic polymers and their potential downstream applications in exobiology, molecular medicine, and synthetic biology.

  19. Synthetic Imaging Maneuver Optimization (SIMO) Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Aurora Flight Sciences (AFS), in collaboration with the MIT Space Systems Laboratory (MIT-SSL), proposed the Synthetic Imaging Maneuver Optimization (SIMO) program...

  20. Thermodynamic Analysis of Ionic Compounds: Synthetic Applications.

    Science.gov (United States)

    Yoder, Claude H.

    1986-01-01

    Shows how thermodynamic cycles can be used to understand trends in heats of formation and aqueous solubilities and, most importantly, how they may be used to choose synthetic routes to new ionic compounds. (JN)

  1. Synthetic biology platform technologies for antimicrobial applications.

    Science.gov (United States)

    Braff, Dana; Shis, David; Collins, James J

    2016-10-01

    The growing prevalence of antibiotic resistance calls for new approaches in the development of antimicrobial therapeutics. Likewise, improved diagnostic measures are essential in guiding the application of targeted therapies and preventing the evolution of therapeutic resistance. Discovery platforms are also needed to form new treatment strategies and identify novel antimicrobial agents. By applying engineering principles to molecular biology, synthetic biologists have developed platforms that improve upon, supplement, and will perhaps supplant traditional broad-spectrum antibiotics. Efforts in engineering bacteriophages and synthetic probiotics demonstrate targeted antimicrobial approaches that can be fine-tuned using synthetic biology-derived principles. Further, the development of paper-based, cell-free expression systems holds promise in promoting the clinical translation of molecular biology tools for diagnostic purposes. In this review, we highlight emerging synthetic biology platform technologies that are geared toward the generation of new antimicrobial therapies, diagnostics, and discovery channels. Copyright © 2016 Elsevier B.V. All rights reserved.

  2. Synthetic Aperture Radar Missions Study Report

    Science.gov (United States)

    Bard, S.

    2000-01-01

    This report reviews the history of the LightSAR project and summarizes actions the agency can undertake to support industry-led efforts to develop an operational synthetic aperture radar (SAR) capability in the United States.

  3. Microfluidic technologies for studying synthetic circuits.

    Science.gov (United States)

    Lin, Benjamin; Levchenko, Andre

    2012-08-01

    Advances in synthetic biology have augmented the available toolkit of biomolecular modules, allowing engineering and manipulation of signaling in a variety of organisms, ranging in complexity from single bacteria and eukaryotic cells to multi-cellular systems. The richness of synthetic circuit outputs can be dramatically enhanced by sophisticated environmental control systems designed to precisely pattern spatial-temporally heterogeneous environmental stimuli controlling these circuits. Moreover, the performance of the synthetic modules and 'blocks' needed to assemble more complicated networks requires more complete characterization as a function of arbitrarily complex environmental inputs. Microfluidic technologies are poised to meet these needs through a variety of innovative designs capitalizing on the unique benefits of manipulating fluids on the micro-scales and nano-scales. This review discusses the utility of microfluidics for the study of synthetic circuits and highlights recent work in the area.

  4. Philosophy of Systems and Synthetic Biology

    DEFF Research Database (Denmark)

    Green, Sara

    2017-01-01

    This entry aims to clarify how systems and synthetic biology contribute to and extend discussions within philosophy of science. Unlike fields such as developmental biology or molecular biology, systems and synthetic biology are not easily demarcated by a focus on a specific subject area or level...... of organization. Rather, they are characterized by the development and application of mathematical, computational, and synthetic modeling strategies in response to complex problems and challenges within the life sciences. Proponents of systems and synthetic biology often stress the necessity of a perspective...... that goes beyond the scope of molecular biology and genetic engineering, respectively. With the emphasis on systems and interaction networks, the approaches explicitly engage in one of the oldest philosophical discussions on the relationship between parts and wholes, or between reductionism and holism...

  5. Biological Applications of Synthetic Nanomachines

    Science.gov (United States)

    Kagan, Daniel Robert

    The field of synthetic nano/microscale propulsion devices has been rapidly expanding because of their ability to possess many key features necessary for bioanalytical applications on biological microchip devices and targeted in vivo delivery. Past studies focused on developing powerful and easily controllable motors by investigating different propulsion schemes (e.g. electrophoretic, bubble release, magnetically propelled) for use in physiological environments. These engineering advancements and the nanomotors inherit capabilities have allowed for their use in three research areas: motion-based biosensing, cellular and biomolecular isolation, and targeted drug delivery. The first research area investigates a unique speed increase of electrophoretically propelled nanomotors when in the presence of silver ions. Au/Pt nanomotors propel by the electrocatalytic decomposition of H2O2 fuel. While most metal ions resulted in a decrease in speed to near Brownian levels, Ag+ has shown a steady increase in speed from 10microm/s to 52microm/s over the micro-molar range. This phenomenon was exploited by tagging nucleic acid detector probes with Ag nanoparticles when conducting simple sandwich assays. This resulted in a cheap, fast, and sensitive, motion-based readout of the concentration-dependent DNA target present on the sandwich assay. The second area of research involved the bioisolation of nucleic acids, protein, bacteria, and cancer cells by bubble-based microrockets. These microrockets contain a platinum interior to catalyze peroxide fuel and can be easily functionalized with antibodies and nucleic acid capture probes to isolate target biomolecules. The motion of these micro-isolation devices creates convection for faster isolation and can be used to transport the biomolecules to a clean environment. The third area of research is focused on targeted drug delivery by various propulsion methods. The ability of nanomotors to transport PLGA and liposome drug vesicles to

  6. The benefits of Fischer-Tropsch waxes in synthetic petroleum jelly.

    Science.gov (United States)

    Bekker, M; Louw, N R; Jansen Van Rensburg, V J; Potgieter, J

    2013-02-01

    This article is an introduction and general discussion regarding the use of Fisher-Tropsch wax in petroleum jelly applications. Traditionally, petroleum jelly is prepared from a blend of microwax, paraffin wax and mineral oil that are all derived from crude oil. Sasol Wax has successfully prepared a petroleum jelly based on predominantly to fully synthetic Fisher-Tropsch wax. Sasol Wax was awarded a patent P53898ZP00-29 November 11 for a predominantly to fully synthetic petroleum jelly based on Fisher-Tropsch wax blends. The benefits of Fisher-Tropsch wax discussed in this article include the absence of aromatic compounds and polycyclic aromatic compounds in Fisher-Tropsch wax as well as the sustainable production that is possible with Fisher-Tropsch wax, as opposed to paraffin wax that may be affected by the closure of group I Base Oil plants. This article will be the first in a series of articles from the same authors, and follow-up articles will include solid-state nuclear magnetic resonance and crystallization studies to determine the influence of predominantly synthetic waxes on petroleum jelly network structures compared with more traditional mineral oil-derived petroleum jellies, final product performance and stability of synthetic petroleum jelly used in, for example, personal care lotions or creams. The influence of oxygenated compounds and product safety and rheological properties (including primary skin feel upon application and secondary skin feel after application) of synthetic petroleum jellies compared with traditional mineral oil-derived petroleum jellies are discussed. © 2012 Society of Cosmetic Scientists and the Société Française de Cosmétologie.

  7. A fully implicit, fully adaptive time and space discretisation method for phase-field simulation of binary alloy solidification

    Science.gov (United States)

    Rosam, J.; Jimack, P. K.; Mullis, A.

    2007-08-01

    A fully implicit numerical method based upon adaptively refined meshes for the simulation of binary alloy solidification in 2D is presented. In addition we combine a second-order fully implicit time discretisation scheme with variable step size control to obtain an adaptive time and space discretisation method. The superiority of this method, compared to widely used fully explicit methods, with respect to CPU time and accuracy, is shown. Due to the high nonlinearity of the governing equations a robust and fast solver for systems of nonlinear algebraic equations is needed to solve the intermediate approximations per time step. We use a nonlinear multigrid solver which shows almost h-independent convergence behaviour.

  8. Reprogramming cells with synthetic proteins

    Directory of Open Access Journals (Sweden)

    Xiaoxiao Yang

    2015-06-01

    Full Text Available Conversion of one cell type into another cell type by forcibly expressing specific cocktails of transcription factors (TFs has demonstrated that cell fates are not fixed and that cellular differentiation can be a two-way street with many intersections. These experiments also illustrated the sweeping potential of TFs to "read" genetically hardwired regulatory information even in cells where they are not normally expressed and to access and open up tightly packed chromatin to execute gene expression programs. Cellular reprogramming enables the modeling of diseases in a dish, to test the efficacy and toxicity of drugs in patient-derived cells and ultimately, could enable cell-based therapies to cure degenerative diseases. Yet, producing terminally differentiated cells that fully resemble their in vivocounterparts in sufficient quantities is still an unmet clinical need. While efforts are being made to reprogram cells nongenetically by using drug-like molecules, defined TF cocktails still dominate reprogramming protocols. Therefore, the optimization of TFs by protein engineering has emerged as a strategy to enhance reprogramming to produce functional, stable and safe cells for regenerative biomedicine. Engineering approaches focused on Oct4, MyoD, Sox17, Nanog and Mef2c and range from chimeric TFs with added transactivation domains, designer transcription activator-like effectors to activate endogenous TFs to reprogramming TFs with rationally engineered DNA recognition principles. Possibly, applying the complete toolkit of protein design to cellular reprogramming can help to remove the hurdles that, thus far, impeded the clinical use of cells derived from reprogramming technologies.

  9. Synthetic heparin-binding growth factor analogs

    Science.gov (United States)

    Pena, Louis A.; Zamora, Paul; Lin, Xinhua; Glass, John D.

    2007-01-23

    The invention provides synthetic heparin-binding growth factor analogs having at least one peptide chain that binds a heparin-binding growth factor receptor, covalently bound to a hydrophobic linker, which is in turn covalently bound to a non-signaling peptide that includes a heparin-binding domain. The synthetic heparin-binding growth factor analogs are useful as soluble biologics or as surface coatings for medical devices.

  10. Synthetic Sling Failure - Evaluations and Recommendations

    Energy Technology Data Exchange (ETDEWEB)

    Henderson, C. S. [Washington River Protection Solutions, Richland, WA (United States); Mackey, Thomas C. [Washington River Protection Solutions, Richland, WA (United States)

    2009-10-26

    The information and evaluations provided in this report were compiled to address the recurring problem of synthetic sling failure. As safety is the number one priority in all work aspects, a solution must be devised to prevent accidents from occurring. A total of thirteen cases regarding synthetic sling failure were evaluated in order to determine their causes, effects, and preventative measures. From the collected data, it was found that all cases in which the synthetic sling contacted the edge of its load resulted in sling failure. It is required that adequate synthetic sling protection devices be used to protect slings in any lift where the sling comes in direct contact with the edge or corner of its load. However, there are no consensus codes or standards stating the type, material, or purpose of the type of protective device used to protect the sling from being cut. Numerous industry standards and codes provide vague descriptions on how to protect synthetic slings. Without a clear, concise statement of how to protect synthetic slings, it is common for inadequate materials and sling protection devices to be used in an attempt to meet the intent of these requirements. The use of an inadequate sling protection device is the main cause of synthetic sling failure in all researched cases. Commercial sling protection devices come in many shapes and sizes, and have a variety of names, as well as advertised uses. 'Abrasion pads' and 'wear protectors' are two different names for products with the same intended purpose. There is no distinguishable way to determine the extent of sling protection which these devices will provide, or what specific scenarios they are made for. This creates room for error in a field where error is unacceptable. This report provides a recommended action for hoisting and rigging activities which require synthetic slings to contact a load, as well as recommended changes to industry standards which will benefit overall

  11. Integration of Natural Polymers and Synthetic Nanostructures

    Science.gov (United States)

    2014-11-20

    11/2014 Final Report August 15 2011- August 15 2014 INTEGRATION OF NATURAL POLYMERS AND SYNTHETIC NANOSTRUCTURES FA9550-11-1-0233 Vladimir V. Tsukruk...inorganic nanostructures . We employ fabrication techniques including layer-by-layer (LbL) deposition, vacuum-assisted self-assembly, and spin-assisted...writing. U U U UU 1 Final Performance Report August 2011 - August 2014 FA9550-11-1-0233: INTEGRATION OF NATURAL POLYMERS AND SYNTHETIC NANOSTRUCTURES

  12. Systems and synthetic biology as emerging technosciences

    Directory of Open Access Journals (Sweden)

    Karen Kastenhofer

    2016-12-01

    Full Text Available Systems and synthetic biology can be understood as emerging technosciences. Both are characteristically shaped by promises and visions, a certain logic and function of labelling, specific forms of social organisation, an embedding in specific regimes of funding and innovation as well as a characteristic matrix of orientations within research practice. This characteristic constitution of systems and synthetic biology has fundamental consequences for scientific practice, its analysis and its governance.

  13. Grand challenges in space synthetic biology

    OpenAIRE

    Menezes, Amor A.; Montague, Michael G.; Cumbers, John; Hogan, John A.; Arkin, Adam P.

    2015-01-01

    Space synthetic biology is a branch of biotechnology dedicated to engineering biological systems for space exploration, industry and science. There is significant public and private interest in designing robust and reliable organisms that can assist on long-duration astronaut missions. Recent work has also demonstrated that such synthetic biology is a feasible payload minimization and life support approach as well. This article identifies the challenges and opportunities that lie ahead in the...

  14. Standardization for natural product synthetic biology.

    Science.gov (United States)

    Zhao, Huimin; Medema, Marnix H

    2016-08-27

    Standardization is one of the foundational features of modern-day engineering, and the use of standardized parts and processes is a key element that distinguishes bona fide synthetic biology from traditional genetic engineering. Here, we discuss the role of standardization in natural product synthetic biology, focusing on standardization of data on biosynthetic pathways and gene clusters, as well as the role of standardization in the process of biosynthetic gene cluster engineering.

  15. [On health regulation of synthetic detergents].

    Science.gov (United States)

    Frolova, A D; Sidorin, G I; Lukovnikova, L V; Skhodkina, N I; D'iakova, L I; Shaposhnikova, E S

    1999-01-01

    The authors present materials on hygienic regulation of such synthetic detergents as "Losk", "Dixan" in air of workplace and populated area, demonstrate results concerning evaluation of "Losk" effects. Discussion covers ways to evaluate chemical load caused by simultaneous emission of synthetic detergents from various environmental objects. For testing reliability of hygienic regulation for complex emission exemplified by "Losk", the authors suggest a model for express evaluation of complex exposure to chemicals.

  16. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

    Science.gov (United States)

    Galdzicki, Michal; Clancy, Kevin P; Oberortner, Ernst; Pocock, Matthew; Quinn, Jacqueline Y; Rodriguez, Cesar A; Roehner, Nicholas; Wilson, Mandy L; Adam, Laura; Anderson, J Christopher; Bartley, Bryan A; Beal, Jacob; Chandran, Deepak; Chen, Joanna; Densmore, Douglas; Endy, Drew; Grünberg, Raik; Hallinan, Jennifer; Hillson, Nathan J; Johnson, Jeffrey D; Kuchinsky, Allan; Lux, Matthew; Misirli, Goksel; Peccoud, Jean; Plahar, Hector A; Sirin, Evren; Stan, Guy-Bart; Villalobos, Alan; Wipat, Anil; Gennari, John H; Myers, Chris J; Sauro, Herbert M

    2014-06-01

    The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow.

  17. Cell-free biology: exploiting the interface between synthetic biology and synthetic chemistry.

    Science.gov (United States)

    Harris, D Calvin; Jewett, Michael C

    2012-10-01

    Just as synthetic organic chemistry once revolutionized the ability of chemists to build molecules (including those that did not exist in nature) following a basic set of design rules, cell-free synthetic biology is beginning to provide an improved toolbox and faster process for not only harnessing but also expanding the chemistry of life. At the interface between chemistry and biology, research in cell-free synthetic systems is proceeding in two different directions: using synthetic biology for synthetic chemistry and using synthetic chemistry to reprogram or mimic biology. In the coming years, the impact of advances inspired by these approaches will make possible the synthesis of nonbiological polymers having new backbone compositions, new chemical properties, new structures, and new functions.

  18. Towards a fully passive transfemoral prosthesis for normal walking

    NARCIS (Netherlands)

    Ünal, Ramazan; Carloni, Raffaella; Behrens, Sebastiaan Maria; Hekman, Edsko E.G.; Stramigioli, Stefano; Koopman, Hubertus F.J.M.

    In this study, we present the principle design of a fully-passive transfemoral prosthesis for normal walking, inspired by the power flow in human natural gait. The working principle of the mechanism is based on three parts, which are responsible of the energetic coupling between the knee and ankle

  19. A fully-implicit model of the global ocean circulation

    NARCIS (Netherlands)

    Weijer, Wilbert; Dijkstra, Henk A.; Öksüzoğlu, Hakan; Wubs, Fred W.; Niet, Arie C. de

    2003-01-01

    With the recent developments in the solution methods for large-dimensional nonlinear algebraic systems, fully-implicit ocean circulation models are now becoming feasible. In this paper, the formulation of such a three-dimensional global ocean model is presented. With this implicit model, the

  20. Viscosity solutions of fully nonlinear functional parabolic PDE

    Directory of Open Access Journals (Sweden)

    Liu Wei-an

    2005-01-01

    Full Text Available By the technique of coupled solutions, the notion of viscosity solutions is extended to fully nonlinear retarded parabolic equations. Such equations involve many models arising from optimal control theory, economy and finance, biology, and so forth. The comparison principle is shown. Then the existence and uniqueness are established by the fixed point theory.

  1. Unsupervised pre-training for fully convolutional neural networks

    NARCIS (Netherlands)

    Wiehman, Stiaan; Kroon, Steve; Villiers, De Hendrik

    2017-01-01

    Unsupervised pre-training of neural networks has been shown to act as a regularization technique, improving performance and reducing model variance. Recently, fully convolutional networks (FCNs) have shown state-of-the-art results on various semantic segmentation tasks. Unfortunately, there is no ef

  2. In Orbit Performance of a Fully Autonomous Star Tracker

    DEFF Research Database (Denmark)

    Jørgensen, John Leif

    1999-01-01

    The Department of Automation at DTU has developed the Advanced Stellar Compass (ASC), a fully autonomous star tracker, for use as high precision attitude reference onboard spacecrafts. The ASC is composed of a CCD-based camera and a powerful microprocessor containing star catalogue, image...

  3. Fully self-consistent GW calculations for molecules

    DEFF Research Database (Denmark)

    Rostgaard, Carsten; Jacobsen, Karsten Wedel; Thygesen, Kristian Sommer

    2010-01-01

    We calculate single-particle excitation energies for a series of 34 molecules using fully self-consistent GW, one-shot G0W0, Hartree-Fock (HF), and hybrid density-functional theory (DFT). All calculations are performed within the projector-augmented wave method using a basis set of Wannier...

  4. Tracking and disturbance rejection for fully actuated mechanical systems

    NARCIS (Netherlands)

    Jayawardhana, Bayu; Weiss, George

    2008-01-01

    In this paper, we solve the tracking and disturbance rejection problem for fully actuated passive mechanical systems. We assume that the reference signal r and its first two derivatives r, r are available to the controller and the disturbance signal d can be decomposed into a finite superposition of

  5. Fully permanent magnet atom chip for Bose-Einstein condensation

    NARCIS (Netherlands)

    T. Fernholz; R. Gerritsma; S. Whitlock; I. Barb; R.J.C. Spreeuw

    2008-01-01

    We describe a proof-of-principle experiment on a fully permanent magnet atom chip. We study ultracold atoms and produce a Bose-Einstein condensate. The magnetic trap is loaded efficiently by adiabatic transport of a magnetic trap via the application of uniform external fields. Radio frequency spectr

  6. VCM Process Design: An ABET 2000 Fully Compliant Project

    Science.gov (United States)

    Benyahia, Farid

    2005-01-01

    A long experience in undergraduate vinyl chloride monomer (VCM) process design projects is shared in this paper. The VCM process design is shown to be fully compliant with ABET 2000 criteria by virtue of its abundance in chemical engineering principles, integration of interpersonal and interdisciplinary skills in design, safety, economics, and…

  7. Peirce and Rationalism: Is Peirce a Fully Semiotic Philosopher?

    Science.gov (United States)

    Stables, Andrew

    2014-01-01

    While Peirce is a seminal figure for contemporary semiotic philosophers, it is axiomatic of a fully semiotic perspective that no philosopher or philosophy (semiotics included) can provide any final answer, as signs are always interpreted and the context of interpretation always varies. Semiosis is evolutionary: it may or may not be construed as…

  8. Experimental Study of Fully Developed Wind Turbine Array Boundary Layer

    Science.gov (United States)

    Turner v, John; Wosnik, Martin

    2014-11-01

    Results from an experimental study of an array of up to 100 model wind turbines with 0.25 m diameter, conducted in the turbulent boundary layer of the 6.0 m wide × 2.7 m tall × 72.0 m long test section of the UNH Flow Physics Facility, are reported. The study aims to address two questions. First, for a given configuration (turbine spacing, initial conditions, etc.), when will the model wind farm reach a ``fully developed'' condition, in which turbulence statistics remain the same from one row to the next within and above the wind turbine array. Second, how is kinetic energy transported in the wind turbine array boundary layer (WTABL). Measurements in the fully developed WTABL can provide valuable insight to the optimization of wind farm energy production. Previous experimental studies with smaller model wind farms were unable to reach the fully developed condition. Due to the size of the UNH facility and the current model array, the fully developed WTABL condition can be achieved. The wind turbine array was simulated by a combination of drag-matched porous disks, used in the upstream part of the array, and by a smaller array of realistic, scaled 3-bladed wind turbines immediately upstream of the measurement location.

  9. Peirce and Rationalism: Is Peirce a Fully Semiotic Philosopher?

    Science.gov (United States)

    Stables, Andrew

    2014-01-01

    While Peirce is a seminal figure for contemporary semiotic philosophers, it is axiomatic of a fully semiotic perspective that no philosopher or philosophy (semiotics included) can provide any final answer, as signs are always interpreted and the context of interpretation always varies. Semiosis is evolutionary: it may or may not be construed as…

  10. New approach to solve symmetric fully fuzzy linear systems

    Indian Academy of Sciences (India)

    P Senthilkumar; G Rajendran

    2011-12-01

    In this paper, we present a method to solve fully fuzzy linear systems with symmetric coefficient matrix. The symmetric coefficient matrix is decomposed into two systems of equations by using Cholesky method and then a solution can be obtained. Numerical examples are given to illustrate our method.

  11. Synthetic biology era: Improving antibiotic's world.

    Science.gov (United States)

    Guzmán-Trampe, Silvia; Ceapa, Corina D; Manzo-Ruiz, Monserrat; Sánchez, Sergio

    2017-06-15

    The emergence of antibiotic-resistant pathogen microorganisms is problematic in the context of the current spectrum of available medication. The poor specificity and the high toxicity of some available molecules have made imperative the search for new strategies to improve the specificity and to pursue the discovery of novel compounds with increased bioactivity. Using living cells as platforms, synthetic biology has counteracted this problem by offering novel pathways to create synthetic systems with improved and desired functions. Among many other biotechnological approaches, the advances in synthetic biology have made it possible to design and construct novel biological systems in order to look for new drugs with increased bioactivity. Advancements have also been made in the redesigning of RNA and DNA molecules in order to engineer antibiotic clusters for antibiotic overexpression. As for the production of these antibacterial compounds, yeasts and filamentous fungi as well as gene therapy are utilized to enhance protein solubility. Specific delivery is achieved by creating chimeras using plant genes into bacterial hosts. Some of these synthetic systems are currently in clinical trials, proving the proficiency of synthetic biology in terms of both pharmacological activities as well as an increase in the biosafety of treatments. It is possible that we may just be seeing the tip of the iceberg, and synthetic biology applications will overpass expectations beyond our present knowledge. Copyright © 2017. Published by Elsevier Inc.

  12. Biomedical synthetic biology: an overview for physicians.

    Science.gov (United States)

    Keret, Ophir

    2013-06-01

    Synthetic bioiogy is a ,relatively new fieild of bologlcal research and development that focases on the engineering of genetic molecular machlnes wIth a specific predefined function. Plainly put the newly engineered organism functions as a machine. It can process information. manufature, heal and even diagnose. We just have to engineer It to do so. The famous quote "Biology Is the nanotechnology that works" is currently being put to the test on a worldwide scale. The application of these machines Is theoretically boundless. In laboratories worldwide synthetic biology technologies are being rationally designed to assist in diagnosis or disrupt disease mechnisms. In the not too distant future they are expected to reach the clinical setting. This new field should be distinguished from classic genetic engineering. The latter researches naturalfy found DNA segments via cloning. It is weakly associated with engineering. Synthetic biology focuses on the engineering of molecular biological machines for the benefit of mankind. This is done via synthetic (computer printed) DNA sequences, man-designed or altered in silico. In this article I will briefly introduce synthetic biology, elaborate on the BiobrickFoundation as an independent fast-growing synthetic biology-sharing movement, and report on selected developing applications for medicine.

  13. How to make a synthetic multicellular computer.

    Science.gov (United States)

    Macia, Javier; Sole, Ricard

    2014-01-01

    Biological systems perform computations at multiple scales and they do so in a robust way. Engineering metaphors have often been used in order to provide a rationale for modeling cellular and molecular computing networks and as the basis for their synthetic design. However, a major constraint in this mapping between electronic and wet computational circuits is the wiring problem. Although wires are identical within electronic devices, they must be different when using synthetic biology designs. Moreover, in most cases the designed molecular systems cannot be reused for other functions. A new approximation allows us to simplify the problem by using synthetic cellular consortia where the output of the computation is distributed over multiple engineered cells. By evolving circuits in silico, we can obtain the minimal sets of Boolean units required to solve the given problem at the lowest cost using cellular consortia. Our analysis reveals that the basic set of logic units is typically non-standard. Among the most common units, the so called inverted IMPLIES (N-Implies) appears to be one of the most important elements along with the NOT and AND functions. Although NOR and NAND gates are widely used in electronics, evolved circuits based on combinations of these gates are rare, thus suggesting that the strategy of combining the same basic logic gates might be inappropriate in order to easily implement synthetic computational constructs. The implications for future synthetic designs, the general view of synthetic biology as a standard engineering domain, as well as potencial drawbacks are outlined.

  14. The Next Generation of Synthetic Biology Chassis: Moving Synthetic Biology from the Laboratory to the Field

    Science.gov (United States)

    2016-09-26

    Copyright. Published XXXX by the American Chemical Society A DOI: 10.1021/acssynbio.6b00256 ACS Synth. Biol. XXXX, XXX , XXX − XXX comprehensive toolkit...generation of synthetic biology chassis. ACS Synthetic Biology Viewpoint DOI: 10.1021/acssynbio.6b00256 ACS Synth. Biol. XXXX, XXX , XXX − XXX B Geobacillus...species genetic circuits and pathways. Nat. Commun. 6, 7832. ACS Synthetic Biology Viewpoint DOI: 10.1021/acssynbio.6b00256 ACS Synth. Biol. XXXX, XXX

  15. The Fifth Annual Sc2.0 and Synthetic Genomes Conference: Synthetic Genomes in High Gear.

    Science.gov (United States)

    Walker, Roy S K; Cai, Yizhi

    2016-09-16

    The Sc2.0 project is perhaps the largest synthetic biology project in the public domain, and ultimately aims to construct a new version of the humble brewer's yeast, Saccharomyces cerevisiae. Each year, the Sc2.0 consortium gather to discuss progress in this ambitious project and highlight new developments at the forefront of synthetic genome engineering. This viewpoint summarizes some of the key moments of the 2016 conference, including updates on the Sc2.0 project itself, mammalian synthetic biology, DNA assembly automation, HGP-Write and a panel discussion on the social and ethical perspectives of synthetic biology.

  16. A Fully Bayesian Approach to Improved Calibration and Prediction of Groundwater Models With Structure Error

    Science.gov (United States)

    Xu, T.; Valocchi, A. J.

    2014-12-01

    Effective water resource management typically relies on numerical models to analyse groundwater flow and solute transport processes. These models are usually subject to model structure error due to simplification and/or misrepresentation of the real system. As a result, the model outputs may systematically deviate from measurements, thus violating a key assumption for traditional regression-based calibration and uncertainty analysis. On the other hand, model structure error induced bias can be described statistically in an inductive, data-driven way based on historical model-to-measurement misfit. We adopt a fully Bayesian approach that integrates a Gaussian process error model to account for model structure error to the calibration, prediction and uncertainty analysis of groundwater models. The posterior distributions of parameters of the groundwater model and the Gaussian process error model are jointly inferred using DREAM, an efficient Markov chain Monte Carlo sampler. We test the usefulness of the fully Bayesian approach towards a synthetic case study of surface-ground water interaction under changing pumping conditions. We first illustrate through this example that traditional least squares regression without accounting for model structure error yields biased parameter estimates due to parameter compensation as well as biased predictions. In contrast, the Bayesian approach gives less biased parameter estimates. Moreover, the integration of a Gaussian process error model significantly reduces predictive bias and leads to prediction intervals that are more consistent with observations. The results highlight the importance of explicit treatment of model structure error especially in circumstances where subsequent decision-making and risk analysis require accurate prediction and uncertainty quantification. In addition, the data-driven error modelling approach is capable of extracting more information from observation data than using a groundwater model alone.

  17. Comparison of Oil Spill Classifications Using Fully and Compact Polarimetric SAR Images

    Directory of Open Access Journals (Sweden)

    Yuanzhi Zhang

    2017-02-01

    Full Text Available In this paper, we present a comparison between several algorithms for oil spill classifications using fully and compact polarimetric SAR images. Oil spill is considered as one of the most significant sources of marine pollution. As a major difficulty of SAR-based oil spill detection algorithms is the classification between mineral and biogenic oil, we focus on quantitatively analyzing and comparing fully and compact polarimetric satellite synthetic aperture radar (SAR modes to detect hydrocarbon slicks over the sea surface, discriminating them from weak-damping surfactants, such as biogenic slicks. The experiment was conducted on quad-pol SAR data acquired during the Norwegian oil-on-water experiment in 2011. A universal procedure was used to extract the features from quad-, dual- and compact polarimetric SAR modes to rank different polarimetric SAR modes and common supervised classifiers. Among all the dual- and compact polarimetric SAR modes, the π/2 mode has the best performance. The best supervised classifiers vary and depended on whether sufficient polarimetric information can be obtained in each polarimetric mode. We also analyzed the influence of the number of polarimetric parameters considered as inputs for the supervised classifiers, onto the detection/discrimination performance. We discovered that a feature set with four features is sufficient for most polarimetric feature-based oil spill classifications. Moreover, dimension reduction algorithms, including principle component analysis (PCA and the local linear embedding (LLE algorithm, were employed to learn low dimensional and distinctive information from quad-polarimetric SAR features. The performance of the new feature sets has comparable performance in oil spill classification.

  18. A Fully Gradient Model for Euler-Bernoulli Nanobeams

    Directory of Open Access Journals (Sweden)

    Raffaele Barretta

    2015-01-01

    Full Text Available A fully gradient elasticity model for bending of nanobeams is proposed by using a nonlocal thermodynamic approach. As a basic theoretical novelty, the proposed constitutive law is assumed to depend on the axial strain gradient, while existing gradient elasticity formulations for nanobeams contemplate only the derivative of the axial strain with respect to the axis of the structure. Variational equations governing the elastic equilibrium problem of bending of a fully gradient nanobeam and the corresponding differential and boundary conditions are thus provided. Analytical solutions for a nanocantilever are given and the results are compared with those predicted by other theories. As a relevant implication of applicative interest in the research field of nanobeams used in nanoelectromechanical systems (NEMS, it is shown that displacements obtained by the present model are quite different from those predicted by the known gradient elasticity treatments.

  19. The production of fully deacetylated chitosan by compression method

    Directory of Open Access Journals (Sweden)

    Xiaofei He

    2016-03-01

    Full Text Available Chitosan’s activities are significantly affected by degree of deacetylation (DDA, while fully deacetylated chitosan is difficult to produce in a large scale. Therefore, this paper introduces a compression method for preparing 100% deacetylated chitosan with less environmental pollution. The product is characterized by XRD, FT-IR, UV and HPLC. The 100% fully deacetylated chitosan is produced in low-concentration alkali and high-pressure conditions, which only requires 15% alkali solution and 1:10 chitosan powder to NaOH solution ratio under 0.11–0.12 MPa for 120 min. When the alkali concentration varied from 5% to 15%, the chitosan with ultra-high DDA value (up to 95% is produced.

  20. Polymeric packaging for fully implantable wireless neural microsensors.

    Science.gov (United States)

    Aceros, Juan; Yin, Ming; Borton, David A; Patterson, William R; Bull, Christopher; Nurmikko, Arto V

    2012-01-01

    We present polymeric packaging methods used for subcutaneous, fully implantable, broadband, and wireless neurosensors. A new tool for accelerated testing and characterization of biocompatible polymeric packaging materials and processes is described along with specialized test units to simulate our fully implantable neurosensor components, materials and fabrication processes. A brief description of the implantable systems is presented along with their current encapsulation methods based on polydimethylsiloxane (PDMS). Results from in-vivo testing of multiple implanted neurosensors in swine and non-human primates are presented. Finally, a novel augmenting polymer thin film material to complement the currently employed PDMS is introduced. This thin layer coating material is based on the Plasma Enhanced Chemical Vapor Deposition (PECVD) process of Hexamethyldisiloxane (HMDSO) and Oxygen (O(2)).

  1. Toward textbook multigrid efficiency for fully implicit resistive magnetohydrodynamics

    KAUST Repository

    Adams, Mark F.

    2010-09-01

    Multigrid methods can solve some classes of elliptic and parabolic equations to accuracy below the truncation error with a work-cost equivalent to a few residual calculations so-called "textbook" multigrid efficiency. We investigate methods to solve the system of equations that arise in time dependent magnetohydrodynamics (MHD) simulations with textbook multigrid efficiency. We apply multigrid techniques such as geometric interpolation, full approximate storage, Gauss-Seidel smoothers, and defect correction for fully implicit, nonlinear, second-order finite volume discretizations of MHD. We apply these methods to a standard resistive MHD benchmark problem, the GEM reconnection problem, and add a strong magnetic guide field, which is a critical characteristic of magnetically confined fusion plasmas. We show that our multigrid methods can achieve near textbook efficiency on fully implicit resistive MHD simulations. (C) 2010 Elsevier Inc. All rights reserved.

  2. Toward textbook multigrid efficiency for fully implicit resistive magnetohydrodynamics

    Energy Technology Data Exchange (ETDEWEB)

    Adams, Mark F. [Columbia Univ., New York, NY (United States); Samtaney, Ravi [Princeton Plasma Physics Lab. (PPPL), Princeton, NJ (United States); Brandt, Achi [Weizmann Inst. of Science, Rehovot (Israel)

    2013-12-14

    Multigrid methods can solve some classes of elliptic and parabolic equations to accuracy below the truncation error with a work-cost equivalent to a few residual calculations – so-called “textbook” multigrid efficiency. We investigate methods to solve the system of equations that arise in time dependent magnetohydrodynamics (MHD) simulations with textbook multigrid efficiency. We apply multigrid techniques such as geometric interpolation, full approximate storage, Gauss-Seidel smoothers, and defect correction for fully implicit, nonlinear, second-order finite volume discretizations of MHD. We apply these methods to a standard resistive MHD benchmark problem, the GEM reconnection problem, and add a strong magnetic guide field, which is a critical characteristic of magnetically confined fusion plasmas. We show that our multigrid methods can achieve near textbook efficiency on fully implicit resistive MHD simulations.

  3. A Flexible Proximity Sensor Fully Fabricated by Inkjet Printing

    Directory of Open Access Journals (Sweden)

    Chin-Tsan Wang

    2010-05-01

    Full Text Available A flexible proximity sensor fully fabricated by inkjet printing is proposed in this paper. The flexible proximity sensor is composed of a ZnO layer sandwiched in between a flexible aluminum sheet and a web-shaped top electrode layer. The flexible aluminum sheet serves as the bottom electrode. The material of the top electrode layer is nano silver. Both the ZnO and top electrode layers are deposited by inkjet printing. The fully inkjet printing process possesses the advantages of direct patterning and low-cost. It does not require photolithography and etching processes since the pattern is directly printed on the flexible aluminum sheet. The prototype demonstrates that the presented flexible sensor is sensitive to the human body. It may be applied to proximity sensing or thermal eradiation sensing.

  4. Asteroseismology of pulsating DA white dwarfs with fully evolutionary models

    Directory of Open Access Journals (Sweden)

    Althaus L.G.

    2013-03-01

    Full Text Available We present a new approach for asteroseismology of DA white dwarfs that consists in the employment of a large set of non-static, physically sound, fully evolutionary models representative of these stars. We already have applied this approach with success to pulsating PG1159 stars (GW Vir variables. Our white dwarf models, which cover a wide range of stellar masses, effective temperatures, and envelope thicknesses, are the result of fully evolutionary computations that take into account the complete history of the progenitor stars from the ZAMS. In particular, the models are characterized by self-consistent chemical structures from the centre to the surface, a crucial aspect of white dwarf asteroseismology. We apply this approach to an ensemble of 44 bright DAV (ZZ Ceti stars.

  5. Applicability of Parametrized Form of Fully Dressed Quark Propagator

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    According to extensive study of the Dyson-Schwinger equations for a fully dressed quark propagator in the "rainbow" approximation with an effective gluon propagator, a parametrized fully dressed confining quark propagator is suggested in this paper. The parametrized quark propagator describes a confined quark propagation in hadron, and is analytic everywhere in complex p2-plane and has no Lehmann representation. The vector and scalar self-energy functions [1 - Af(p2)] and [Bf(p2) - mf], dynamically running effective mass of quark Mf(p2) and the structure of non-local quark vacuum condensates as well as local quark vacuum condensates are predicted by use of the parametrized quark propagator. The results are compatible with other theoretical calculations.

  6. Fully phase encrypted memory using cascaded extended fractional Fourier transform

    Science.gov (United States)

    Nishchal, Naveen K.; Joseph, Joby; Singh, Kehar

    2003-11-01

    In this paper, we implement a fully phase encrypted memory system using cascaded extended fractional Fourier transform (FRT). We encrypt and decrypt a two-dimensional image obtained from an amplitude image. The fully phase image to be encrypted is fractional Fourier transformed three times and random phase masks are placed in the two intermediate planes. Performing the FRT three times increases the key size, at an added complexity of one more lens. The encrypted image is holographically recorded in a photorefractive crystal and is then decrypted by generating through phase conjugation, conjugate of encrypted image. The decrypted phase image is converted into an amplitude image by using phase contrast technique. A lithium niobate crystal has been used as a phase contrast filter to reconstruct the phase image, alleviating the need of alignment in the Fourier plane, thereby making the system rugged.

  7. Simulation of Fully Nonlinear 3-D Numerical Wave Tank

    Institute of Scientific and Technical Information of China (English)

    张晓兔; 滕斌; 宁德志

    2004-01-01

    A fully nonlinear numerical wave tank (NWT) has been simulated by use of a three-dimensional higher order boundary element method (HOBEM) in the time domain. Within the frame of potential flow and the adoption of simply Rankine source, the resulting boundary integral equation is repeatedly solved at each time step and the fully nonlinear free surface boundary conditions are integrated with time to update its position and boundary values. A smooth technique is also adopted in order to eliminate the possible saw-tooth numerical instabilities. The incident wave at the uptank is given as theoretical wave in this paper. The outgoing waves are absorbed inside a damping zone by spatially varying artificial damping on the free surface at the wave tank end. The numerical results show that the NWT developed by these approaches has a high accuracy and good numerical stability.

  8. Fully localised nonlinear energy growth optimals in pipe flow

    CERN Document Server

    Pringle, Chris C T; Kerswell, Rich R

    2014-01-01

    A new, fully-localised, energy growth optimal is found over large times and in long pipe domains at a given mass flow rate. This optimal emerges at a threshold disturbance energy below which a nonlinear version of the known (streamwise-independent) linear optimal (Schmid \\& Henningson 1994) is selected, and appears to remain the optimal up until the critical energy at which transition is triggered. The form of this optimal is similar to that found in short pipes (Pringle et al.\\ 2012) albeit now with full localisation in the streamwise direction. This fully-localised optimal perturbation represents the best approximation yet of the {\\em minimal seed} (the smallest perturbation capable of triggering a turbulent episode) for `real' (laboratory) pipe flows.

  9. Far-field momentum flux of high-frequency axisymmetric synthetic jets

    Science.gov (United States)

    Xia, X.; Mohseni, K.

    2015-11-01

    This study focuses on predicting the far-field momentum flux for axisymmetric synthetic jets, which is an important parameter that characterizes the performance of such jets in flow-control applications. Previous researchers have found that a negative pressure gradient near the jet orifice is responsible for the observed decrease in the momentum flux in the streamwise direction. As a result, prediction of the far field momentum flux of synthetic jets has encountered serious challenges. In this paper, the far-field momentum flux is modeled by calculating the hydrodynamic impulse of the vortical structure formed during one actuation cycle, under the assumption that the jet is fully developed and periodic. In this manner, the complex near-field effect of a synthetic jet is explicitly captured by the interactions between the vortices and the actuator. Furthermore, the impulse of these vortical structures is predicted using only the actuation parameters of the synthetic jet, namely, the stroke length, L, the orifice diameter, d, and the actuation frequency, f. For a synthetic jet with a stroke ratio, L/d, larger than the formation number, L∗/d, this model predicts that the normalized far-field momentum flux, K/Ks, decreases when L/d increases. This can be explained by an increasing circulation fraction of the trailing jet, which contains less impulse per unit circulation compared with the leading vortex. This model is validated using hot-wire anemometry measurement of a series of synthetic jets. Moreover, by comparing with experimental data that have large L/d, this model suggests that the contribution of trailing jet to the overall far-field momentum flux is not negligible.

  10. 21 CFR 178.3720 - Petroleum wax, synthetic.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 3 2010-04-01 2009-04-01 true Petroleum wax, synthetic. 178.3720 Section 178.3720... Certain Adjuvants and Production Aids § 178.3720 Petroleum wax, synthetic. Synthetic petroleum wax may be... the synthetic petroleum wax meets the definition and specifications prescribed in § 172.888 of this...

  11. 21 CFR 172.888 - Synthetic petroleum wax.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 3 2010-04-01 2009-04-01 true Synthetic petroleum wax. 172.888 Section 172.888... CONSUMPTION Multipurpose Additives § 172.888 Synthetic petroleum wax. Synthetic petroleum wax may be safely used in or on foods in accordance with the following conditions: (a) Synthetic petroleum wax is a...

  12. Dynamical spacetimes and gravitational radiation in a Fully Constrained Formulation

    CERN Document Server

    Cordero-Carrión, Isabel; Ibáñez, José María

    2010-01-01

    This contribution summarizes the recent work carried out to analyze the behavior of the hyperbolic sector of the Fully Constrained Formulation (FCF) derived in Bonazzola et al. 2004. The numerical experiments presented here allows one to be confident in the performances of the upgraded version of CoCoNuT's code by replacing the Conformally Flat Condition (CFC) approximation of the Einstein equations by the FCF.

  13. Dynamical spacetimes and gravitational radiation in a Fully Constrained Formulation

    Energy Technology Data Exchange (ETDEWEB)

    Cordero-Carrion, Isabel; Ibanez, Jose MarIa [Departamento de Astronomia y Astrofisica, Universidad de Valencia, C/ Dr. Moliner 50, E-46100 Burjassot, Valencia (Spain); Cerda-Duran, Pablo, E-mail: isabel.cordero@uv.e, E-mail: cerda@mpa-garching.mpg.d, E-mail: jose.m.ibanez@uv.e [Max-Planck-Institut fuer Astrophysik, Karl-Schwarzschild-Strasse 1, D-85741 Garching (Germany)

    2010-05-01

    This contribution summarizes the recent work carried out to analyze the behavior of the hyperbolic sector of the Fully Constrained Formulation (FCF) derived in Bonazzola et al. 2004. The numerical experiments presented here allows one to be confident in the performances of the upgraded version of CoCoNuT's code by replacing the Conformally Flat Condition (CFC) approximation of the Einstein equations by the FCF.

  14. Fully depleted back-illuminated p-channel CCD development

    Energy Technology Data Exchange (ETDEWEB)

    Bebek, Chris J.; Bercovitz, John H.; Groom, Donald E.; Holland, Stephen E.; Kadel, Richard W.; Karcher, Armin; Kolbe, William F.; Oluseyi, Hakeem M.; Palaio, Nicholas P.; Prasad, Val; Turko, Bojan T.; Wang, Guobin

    2003-07-08

    An overview of CCD development efforts at Lawrence Berkeley National Laboratory is presented. Operation of fully-depleted, back-illuminated CCD's fabricated on high resistivity silicon is described, along with results on the use of such CCD's at ground-based observatories. Radiation damage and point-spread function measurements are described, as well as discussion of CCD fabrication technologies.

  15. Solving a Fully Fuzzy Linear Programming Problem through Compromise Programming

    OpenAIRE

    Haifang Cheng; Weilai Huang; Jianhu Cai

    2013-01-01

    In the current literatures, there are several models of fully fuzzy linear programming (FFLP) problems where all the parameters and variables were fuzzy numbers but the constraints were crisp equality or inequality. In this paper, an FFLP problem with fuzzy equality constraints is discussed, and a method for solving this FFLP problem is also proposed. We first transform the fuzzy equality constraints into the crisp inequality ones using the measure of the similarity, which is interpreted as t...

  16. A Fully Computerized Method to Backup the Router Configuration File

    Directory of Open Access Journals (Sweden)

    Ghassan H.Majeed

    2007-01-01

    Full Text Available This paper presents a fully computerized method to backup the router configuration file. The method consists of a friendly graphical interface programmed by Java programming language The proposed method is compared with the two existing methods, namely: TFTP server method and Copy/Paste method. The comparison reveals that the proposed method has many advantages over the existing ones. The proposed method has been implemented on Cisco routers (series 2500, 2600 and 2800

  17. FASTER: an unsupervised fully automated sleep staging method for mice

    OpenAIRE

    Sunagawa, GA; Sei, H; Shimba, S; Urade, Y; Ueda, HR

    2013-01-01

    Identifying the stages of sleep, or sleep staging, is an unavoidable step in sleep research and typically requires visual inspection of electroencephalography (EEG) and electromyography (EMG) data. Currently, scoring is slow, biased and prone to error by humans and thus is the most important bottleneck for large-scale sleep research in animals. We have developed an unsupervised, fully automated sleep staging method for mice that allows less subjective and high-throughput evaluation of sleep. ...

  18. Schwinger boson approach to the fully screened Kondo model.

    Science.gov (United States)

    Rech, J; Coleman, P; Zarand, G; Parcollet, O

    2006-01-13

    We apply the Schwinger boson scheme to the fully screened Kondo model and generalize the method to include antiferromagnetic interactions between ions. Our approach captures the Kondo crossover from local moment behavior to a Fermi liquid with a nontrivial Wilson ratio. When applied to the two-impurity model, the mean-field theory describes the "Varma-Jones" quantum phase transition between a valence bond state and a heavy Fermi liquid.

  19. A fully automated multicapillary electrophoresis device for DNA analysis.

    Science.gov (United States)

    Behr, S; Mätzig, M; Levin, A; Eickhoff, H; Heller, C

    1999-06-01

    We describe the construction and performance of a fully automated multicapillary electrophoresis system for the analysis of fluorescently labeled biomolecules. A special detection system allows the simultaneous spectral analysis of all 96 capillaries. The main features are true parallel detection without any moving parts, high robustness, and full compatibility to existing protocols. The device can process up to 40 microtiter plates (96 and 384 well) without human interference, which means up to 15,000 samples before it has to be reloaded.

  20. Fully automated apparatus for the proximate analysis of coals

    Energy Technology Data Exchange (ETDEWEB)

    Fukumoto, K.; Ishibashi, Y.; Ishii, T.; Maeda, K.; Ogawa, A.; Gotoh, K.

    1985-01-01

    The authors report the development of fully-automated equipment for the proximate analysis of coals, a development undertaken with the twin aims of labour-saving and developing robot applications technology. This system comprises a balance, electric furnaces, a sulfur analyzer, etc., arranged concentrically around a multi-jointed robot which automatically performs all the necessary operations, such as sampling and weighing the materials for analysis, and inserting and removing them from the furnaces. 2 references.

  1. Efficient variational diagonalization of fully many-body localized Hamiltonians

    Science.gov (United States)

    Pollmann, Frank; Khemani, Vedika; Cirac, J. Ignacio; Sondhi, S. L.

    2016-07-01

    We introduce a variational unitary matrix product operator based variational method that approximately finds all the eigenstates of fully many-body localized one-dimensional Hamiltonians. The computational cost of the variational optimization scales linearly with system size for a fixed depth of the UTN ansatz. We demonstrate the usefulness of our approach by considering the Heisenberg chain in a strongly disordered magnetic field for which we compare the approximation to exact diagonalization results.

  2. Nucleon-Nucleon Scattering From Fully-Dynamical Lattice QCD

    Energy Technology Data Exchange (ETDEWEB)

    Konstantinos Orginos; Martin Savage; Paulo Bedaque; Silas Beane

    2006-07-01

    We present results of the first fully-dynamical lattice QCD determination of nucleon-nucleon scattering lengths in the 1 S0 channel and 3 S1 - 3 D1 coupled channels. The calculations are performed with domain-wall valence quarks on the MILC staggered configurations with lattice spacing of b = 0.125 fm in the isospin-symmetric limit, and in the absence of electromagnetic interactions

  3. Fully developed turbulence in slugs of pipe flows

    Science.gov (United States)

    Cerbus, Rory; Liu, Chien-Chia; Sakakibara, Jun; Gioia, Gustavo; Chakraborty, Pinaki

    2015-11-01

    Despite over a century of research, transition to turbulence in pipe flows remains a mystery. In theory the flow remains laminar for arbitrarily large Reynolds number, Re. In practice, however, the flow transitions to turbulence at a finite Re whose value depends on the disturbance, natural or artificial, in the experimental setup. The flow remains in the transition state for a range of Re ~ 0 (1000) ; for larger Re the flow becomes fully developed. The transition state for Re > 3000 consists of axially segregated regions of laminar and turbulent patches. These turbulent patches, known as slugs, grow as they move downstream. Their lengths span anywhere between a few pipe diameters to the whole length of the pipe. Here we report Stereo Particle Image Velocimetry measurements in the cross-section of the slugs. Notwithstanding the continuous growth of the slugs, we find that the mean velocity and stress profiles in the slugs are indistinguishable from that of statistically-stationary fully-developed turbulent flows. Our results are independent of the length of the slugs. We contrast our results with the well-known work of Wygnanski & Champagne (1973), whose measurements, we argue, are insufficient to draw a clear conclusion regarding fully developed turbulence in slugs.

  4. Building Extraction from Remote Sensing Data Using Fully Convolutional Networks

    Science.gov (United States)

    Bittner, K.; Cui, S.; Reinartz, P.

    2017-05-01

    Building detection and footprint extraction are highly demanded for many remote sensing applications. Though most previous works have shown promising results, the automatic extraction of building footprints still remains a nontrivial topic, especially in complex urban areas. Recently developed extensions of the CNN framework made it possible to perform dense pixel-wise classification of input images. Based on these abilities we propose a methodology, which automatically generates a full resolution binary building mask out of a Digital Surface Model (DSM) using a Fully Convolution Network (FCN) architecture. The advantage of using the depth information is that it provides geometrical silhouettes and allows a better separation of buildings from background as well as through its invariance to illumination and color variations. The proposed framework has mainly two steps. Firstly, the FCN is trained on a large set of patches consisting of normalized DSM (nDSM) as inputs and available ground truth building mask as target outputs. Secondly, the generated predictions from FCN are viewed as unary terms for a Fully connected Conditional Random Fields (FCRF), which enables us to create a final binary building mask. A series of experiments demonstrate that our methodology is able to extract accurate building footprints which are close to the buildings original shapes to a high degree. The quantitative and qualitative analysis show the significant improvements of the results in contrast to the multy-layer fully connected network from our previous work.

  5. BUILDING EXTRACTION FROM REMOTE SENSING DATA USING FULLY CONVOLUTIONAL NETWORKS

    Directory of Open Access Journals (Sweden)

    K. Bittner

    2017-05-01

    Full Text Available Building detection and footprint extraction are highly demanded for many remote sensing applications. Though most previous works have shown promising results, the automatic extraction of building footprints still remains a nontrivial topic, especially in complex urban areas. Recently developed extensions of the CNN framework made it possible to perform dense pixel-wise classification of input images. Based on these abilities we propose a methodology, which automatically generates a full resolution binary building mask out of a Digital Surface Model (DSM using a Fully Convolution Network (FCN architecture. The advantage of using the depth information is that it provides geometrical silhouettes and allows a better separation of buildings from background as well as through its invariance to illumination and color variations. The proposed framework has mainly two steps. Firstly, the FCN is trained on a large set of patches consisting of normalized DSM (nDSM as inputs and available ground truth building mask as target outputs. Secondly, the generated predictions from FCN are viewed as unary terms for a Fully connected Conditional Random Fields (FCRF, which enables us to create a final binary building mask. A series of experiments demonstrate that our methodology is able to extract accurate building footprints which are close to the buildings original shapes to a high degree. The quantitative and qualitative analysis show the significant improvements of the results in contrast to the multy-layer fully connected network from our previous work.

  6. Fully hadronic ttbar cross section measurement with ATLAS detector

    CERN Document Server

    Bertella, Claudia

    2011-01-01

    The top quark pair production cross section in the fully hadronic final state is characterized by a six jet topology, two of which could be identified as originating from a b-quark using ATLAS b-tagging algorithms. Compared to other decay channels, this final state presents an advantageous larger branching ratio; on the other hand it suffers from a very large QCD multi-jet background, generally difficult to estimate from Monte Carlo simulation and therefore evaluated using data-driven techniques. The analysis is performed using 36pb-1 of pp collisions produced at the LHC with a center-of-mass energy of 7 TeV. The observed upper limit is set at 261 pb at 95% confidence level, where the expected Standard Model cross-section for the ttbar process is 165+11-16 pb. In the future, when the LHC luminosity increases, it is essential, to efficiently trigger on these fully hadronic ttbar events, to use dedicated triggers. An overview of the analysis for ttbar production cross section measurement in the fully hadronic f...

  7. Fully Relativistic Calculations of Magneto-Optical Kerr Effect

    Science.gov (United States)

    Li, Ming-Fang; Ariizumi, Toshihiro; Suzuki, Shugo

    2007-05-01

    We study the magneto-optical Kerr effect using fully relativistic calculations. Spin-orbit coupling is dealt with exactly solving the Dirac equation directly and the matrix elements of the Dirac matrices α are used in a fully relativistic expression of the Kubo formula for the optical conductivity derived with a relativistic sum rule. We also perform approximate calculations of the optical conductivity to examine the accuracy of a partly relativistic expression in which the matrix elements of the momentum operator p are used instead. As an example, we carry out calculations for bcc Fe and fcc Ni using the fully relativistic full-potential linear-combination-of-atomic-orbitals method. It is found that the partly relativistic treatment is good for the diagonal optical conductivity while it is not very good for the off-diagonal optical conductivity, the Kerr rotation angle, and the Kerr ellipticity. The results of the present study are compared to those of experimental and other theoretical studies.

  8. WISB: Warwick Integrative Synthetic Biology Centre.

    Science.gov (United States)

    McCarthy, John

    2016-06-15

    Synthetic biology promises to create high-impact solutions to challenges in the areas of biotechnology, human/animal health, the environment, energy, materials and food security. Equally, synthetic biologists create tools and strategies that have the potential to help us answer important fundamental questions in biology. Warwick Integrative Synthetic Biology (WISB) pursues both of these mutually complementary 'build to apply' and 'build to understand' approaches. This is reflected in our research structure, in which a core theme on predictive biosystems engineering develops underpinning understanding as well as next-generation experimental/theoretical tools, and these are then incorporated into three applied themes in which we engineer biosynthetic pathways, microbial communities and microbial effector systems in plants. WISB takes a comprehensive approach to training, education and outreach. For example, WISB is a partner in the EPSRC/BBSRC-funded U.K. Doctoral Training Centre in synthetic biology, we have developed a new undergraduate module in the subject, and we have established five WISB Research Career Development Fellowships to support young group leaders. Research in Ethical, Legal and Societal Aspects (ELSA) of synthetic biology is embedded in our centre activities. WISB has been highly proactive in building an international research and training network that includes partners in Barcelona, Boston, Copenhagen, Madrid, Marburg, São Paulo, Tartu and Valencia.

  9. Synthetic cathinones: a new public health problem.

    Science.gov (United States)

    Karila, Laurent; Megarbane, Bruno; Cottencin, Olivier; Lejoyeux, Michel

    2015-01-01

    New psychoactive substances (NPS) have completely modified the drug scene and the current landscape of addiction. Synthetic substances, such as substituted or synthetic cathinones, also known as « legal highs », are often produced and used to mimic the effects of controlled drugs such as cocaine, methylenedioxymethamphetamine (MDMA, ecstasy), and methamphetamine. The overwhelming majority of synthetic cathinones are produced in China and South East Asian countries. The Internet has emerged as the new marketplace for NPS, playing a major role in providing information on acquisition, synthesis, extraction, identification, and substance use. All these compounds are intentionally mislabeled and sold on-line under slang terms such as bath salts, plant food, plant feeders and research chemicals. They are sometimes labeled « not for human use » or « not tested for hazards or toxicity ». The rapid spread of NPS forces member countries of the European Union to adapt their response to the potential new dangers that may cause. To date, not only health actors but also the general public need to be clearly informed and aware of dangers resulting from NPS spread and use. Here, we review the major clinical effects of synthetic cathinones to highlight their impact on public health. A literature search was conducted from 2009 to 2014 based on PubMed, Google Scholar, Erowid, and governmental websites, using the following keywords alone or in combination: "new psychoactive substances", "synthetic cathinones", "substituted cathinones", "mephedrone", "methylone", "MDPV", "4-MEC", "addiction", and "substance use disorder".

  10. Synthetic biology and the technicity of biofuels.

    Science.gov (United States)

    Mackenzie, Adrian

    2013-06-01

    The principal existing real-world application of synthetic biology is biofuels. Several 'next generation biofuel' companies-Synthetic Genomics, Amyris and Joule Unlimited Technologies-claim to be using synthetic biology to make biofuels. The irony of this is that highly advanced science and engineering serves the very mundane and familiar realm of transport. Despite their rather prosaic nature, biofuels could offer an interesting way to highlight the novelty of synthetic biology from several angles at once. Drawing on the French philosopher of technology and biology Gilbert Simondon, we can understand biofuels as technical objects whose genesis involves processes of concretisation that negotiate between heterogeneous geographical, biological, technical, scientific and commercial realities. Simondon's notion of technicity, the degree of concretisation of a technical object, usefully conceptualises this relationality. Viewed in terms of technicity, we might understand better how technical entities, elements, and ensembles are coming into being in the name of synthetic biology. The broader argument here is that when we seek to identify the newness of disciplines, their newness might be less epistemic and more logistic. Crown Copyright © 2013. Published by Elsevier Ltd. All rights reserved.

  11. Rheological characteristics of synthetic road binders

    Energy Technology Data Exchange (ETDEWEB)

    Gordon D. Airey; Musarrat H. Mohammed; Caroline Fichter [University of Nottingham, Nottingham (United Kingdom)

    2008-08-15

    This paper deals with the synthesis of polymer binders from monomers that could in future be derived from renewable resources. These binders consist of polyethyl acrylate (PEA) of different molecular weight, polymethyl acrylate (PMA) and polybutyl acrylate (PBA), which were synthesised from ethyl acrylate, methyl acrylate and butyl acrylate, respectively, by atom transfer radical polymerization (ATRP). The fundamental rheological properties of these binders were determined by means of a dynamic shear rheometer (DSR) using a combination of temperature and frequency sweeps. The results indicate that PEA has rheological properties similar to that of 100/150 penetration grade bitumen, PMA similar rheological properties to that of 10/20 penetration grade bitumen, while PBA, due to its highly viscous nature and low complex modulus, cannot be used on its own as an asphalt binder. The synthetic binders were also combined with conventional penetration grade bitumen to produce a range of bitumen-synthetic polymer binder blends. These blends were batched by mass in the ratio of 1:1 or 3:1 and subjected to the same DSR rheological testing as the synthetic binders. The blends consisting of a softer bitumen (70/100 pen or 100/150 pen) with a hard synthetic binder (PMA) tended to be more compatible and therefore stable and produced rheological properties that combined the properties of the two components. The synthetic binders and particularly the extended bitumen samples (blends) produced rheological properties that showed similar characteristics to elastomeric SBS PMBs. 30 refs., 12 figs., 2 tabs.

  12. [Treatment approaches for synthetic drug addiction].

    Science.gov (United States)

    Kobayashi, Ohji

    2015-09-01

    In Japan, synthetic drugs have emerged since late 2000s, and cases of emergency visits and fatal traffic accidents due to acute intoxication have rapidly increased. The synthetic drugs gained popularity mainly because they were cheap and thought to be "legal". The Japanese government restricted not only production and distribution, but also its possession and use in April 2014. As the synthetic drug dependent patients have better social profiles compared to methamphetamine abusers, this legal sanction may have triggered the decrease in the number of synthetic drug dependent patient visits observed at Kanagawa Psychiatric Center since July 2014. Treatment of the synthetic drug dependent patients should begin with empathic inquiry into the motives and positive psychological effects of the drug use. In the maintenance phase, training patients to trust others and express their hidden negative emotions through verbal communications is essential. The recovery is a process of understanding the relationship between psychological isolation and drug abuse, and gaining trust in others to cope with negative emotions that the patients inevitably would face in their subsequent lives.

  13. Fully automatic oil spill detection from COSMO-SkyMed imagery using a neural network approach

    Science.gov (United States)

    Avezzano, Ruggero G.; Del Frate, Fabio; Latini, Daniele

    2012-09-01

    The increased amount of available Synthetic Aperture Radar (SAR) images acquired over the ocean represents an extraordinary potential for improving oil spill detection activities. On the other side this involves a growing workload on the operators at analysis centers. In addition, even if the operators go through extensive training to learn manual oil spill detection, they can provide different and subjective responses. Hence, the upgrade and improvements of algorithms for automatic detection that can help in screening the images and prioritizing the alarms are of great benefit. In the framework of an ASI Announcement of Opportunity for the exploitation of COSMO-SkyMed data, a research activity (ASI contract L/020/09/0) aiming at studying the possibility to use neural networks architectures to set up fully automatic processing chains using COSMO-SkyMed imagery has been carried out and results are presented in this paper. The automatic identification of an oil spill is seen as a three step process based on segmentation, feature extraction and classification. We observed that a PCNN (Pulse Coupled Neural Network) was capable of providing a satisfactory performance in the different dark spots extraction, close to what it would be produced by manual editing. For the classification task a Multi-Layer Perceptron (MLP) Neural Network was employed.

  14. Prospective Technology Assessment of Synthetic Biology: Fundamental and Propaedeutic Reflections in Order to Enable an Early Assessment.

    Science.gov (United States)

    Schmidt, Jan Cornelius

    2016-08-01

    Synthetic biology is regarded as one of the key technosciences of the future. The goal of this paper is to present some fundamental considerations to enable procedures of a technology assessment (TA) of synthetic biology. To accomplish such an early "upstream" assessment of a not yet fully developed technology, a special type of TA will be considered: Prospective TA (ProTA). At the center of ProTA are the analysis and the framing of "synthetic biology," including a characterization and assessment of the technological core. The thesis is that if there is any differentia specifica giving substance to the umbrella term "synthetic biology," it is the idea of harnessing self-organization for engineering purposes. To underline that we are likely experiencing an epochal break in the ontology of technoscientific systems, this new type of technology is called "late-modern technology." -I start this paper by analyzing the three most common visions of synthetic biology. Then I argue that one particular vision deserves more attention because it underlies the others: the vision of self-organization. I discuss the inherent limits of this new type of late-modern technology in the attempt to control and monitor possible risk issues. I refer to Hans Jonas' ethics and his early anticipation of the risks of a novel type of technology. I end by drawing conclusions for the approach of ProTA towards an early societal shaping of synthetic biology.

  15. Integrating hydrology within a fully coupled environmental prediction system

    Science.gov (United States)

    Best, Martin; Lewis, Huw; Ashton, Heather; Blyth, Eleanor; Martinez, Alberto

    2017-04-01

    Historically the hydrological community and the community developing the land surface component of atmospheric models have both been tasked with representing the terrestrial hydrological cycle, but have focused on different ends, namely streamflow and evaporation respectively. To date the lack of computational resources and representative observations have limited the integration of the skills within these two communities. However, this is no longer the case. In addition, the drive toward fully integrated high resolution environmental prediction systems, coupling atmosphere, land and ocean on regional domains, requires an accurate representation for all aspects of terrestrial hydrology. Hence a new focus is emerging to integrate improved hydrological processes within the land surface components of atmospheric models. The UK Environmental Prediction (UKEP) project is a research experiment aimed at understanding the potential benefits for detailed environmental forecasting from a fully coupled atmosphere/land/ocean system at km-scale resolution for the UK. The prototype model utilises the Joint UK Land Environment Simulator (JULES) as its land surface component, coupled to the RFM river flow model. Although JULES has been previously used for climate studies that close the global water cycle, the JULES/RFM system has not been comprehensively evaluated for its ability to simulate river discharge. In this study we attempt some initial evaluation of the JULES/RFM system for all aspects of the terrestrial hydrological cycle, including evaporation, soil moisture and streamflow. In addition, comparisons are made between the results from the fully coupled environmental prediction system and stand alone JULES/RFM simulations forced by atmospheric driving data from the UK weather forecasting model. This provides an opportunity to assess the impact of fully coupled versus a one way coupled response for terrestrial hydrology. Finally we consider the potential for coupling JULES

  16. Profiling Heparin-Chemokine Interactions Using Synthetic Tools

    Science.gov (United States)

    de Paz, Jose L.; Moseman, E. Ashley; Noti, Christian; Polito, Laura; von Andrian, Ulrich H.; Seeberger, Peter H.

    2009-01-01

    Glycosaminoglycans (GAGs), such as heparin or heparan sulfate, are required for the in vivo function of chemokines. Chemokines play a crucial role in the recruitment of leukocyte subsets to sites of inflammation and lymphocytes trafficking. GAG-chemokine interactions mediate cell migration and determine which leukocyte subsets enter tissues. Identifying the exact GAC sequences that bind to particular chemokines is key to understand chemokine function at the molecular level and develop strategies to interfere with chemokine-mediated processes. Here, we characterize the heparin binding profiles of eight chemokines (CCL21, IL-8, CXCL12, CXCL13, CCL19, CCL25, CCL28, and CXCL16) by employing heparin microarrays containing a small library of synthetic heparin oligosaccharides. The chemokines differ significantly in their interactions with heparin oligosaccharides: While some chemokines, (e.g., CCL21) strongly bind to a hexasaccharide containing the GlcNSO3(6-OSO3)-IdoA(2-OSO3) repeating unit, CCL19 does not bind and CXCL12 binds only weakly. The carbohydrate microarray binding results were validated by surface plasmon resonance experiments. In vitro chemotaxis assays revealed that dendrimers coated with the fully sulfated heparin hexasaccharide inhibit lymphocyte migration toward CCL21. Migration toward CXCL12 or CCL19 was not affected. These in vitro homing assays indicate that multivalent synthetic heparin dendrimers inhibit the migration of lymphocytes toward certain chemokine gradients by blocking the formation of a chemokine concentration gradient on GAG endothelial chains. These findings are in agreement with preliminary in vivo measurements of circulating lymphocytes. The results presented here contribute to the understanding of GAG-chemokine interactions, a first step toward the design of novel drugs that modulate chemokine activity. PMID:18030990

  17. Mammalian synthetic biology for studying the cell.

    Science.gov (United States)

    Mathur, Melina; Xiang, Joy S; Smolke, Christina D

    2017-01-02

    Synthetic biology is advancing the design of genetic devices that enable the study of cellular and molecular biology in mammalian cells. These genetic devices use diverse regulatory mechanisms to both examine cellular processes and achieve precise and dynamic control of cellular phenotype. Synthetic biology tools provide novel functionality to complement the examination of natural cell systems, including engineered molecules with specific activities and model systems that mimic complex regulatory processes. Continued development of quantitative standards and computational tools will expand capacities to probe cellular mechanisms with genetic devices to achieve a more comprehensive understanding of the cell. In this study, we review synthetic biology tools that are being applied to effectively investigate diverse cellular processes, regulatory networks, and multicellular interactions. We also discuss current challenges and future developments in the field that may transform the types of investigation possible in cell biology. © 2017 Mathur et al.

  18. CSBB: synthetic biology research at Newcastle University.

    Science.gov (United States)

    Goñi-Moreno, Angel; Wipat, Anil; Krasnogor, Natalio

    2017-06-15

    The Centre for Synthetic Biology and the Bioeconomy (CSBB) brings together a far-reaching multidisciplinary community across all Newcastle University's faculties - Medical Sciences, Science, Agriculture and Engineering, and Humanities, Arts and Social Sciences. The CSBB focuses on many different areas of Synthetic Biology, including bioprocessing, computational design and in vivo computation, as well as improving understanding of basic molecular machinery. Such breadth is supported by major national and international research funding, a range of industrial partners in the North East of England and beyond, as well as a large number of doctoral and post-doctoral researchers. The CSBB trains the next generation of scientists through a 1-year MSc in Synthetic Biology. © 2017 The Author(s).

  19. Structural Antitumoral Activity Relationships of Synthetic Chalcones

    Directory of Open Access Journals (Sweden)

    Cesar Echeverria

    2009-01-01

    Full Text Available Relationships between the structural characteristic of synthetic chalcones and their antitumoral activity were studied. Treatment of HepG2 cells for 24 h with synthetic 2’-hydroxychalcones resulted in apoptosis induction and dose-dependent inhibition of cell proliferation. The calculated reactivity indexes and the adiabatic electron affinities using the DFT method including solvent effects, suggest a structure-activity relationship between the Chalcones structure and the apoptosis in HepG2 cells. The absence of methoxy substituents in the B ring of synthetic 2’-hydroxychalcones, showed the mayor structure-activity pattern along the series.

  20. Synthetic gene networks in plant systems.

    Science.gov (United States)

    Junker, Astrid; Junker, Björn H

    2012-01-01

    Synthetic biology methods are routinely applied in the plant field as in other eukaryotic model systems. Several synthetic components have been developed in plants and an increasing number of studies report on the assembly into functional synthetic genetic circuits. This chapter gives an overview of the existing plant genetic networks and describes in detail the application of two systems for inducible gene expression. The ethanol-inducible system relies on the ethanol-responsive interaction of the AlcA transcriptional activator and the AlcR receptor resulting in the transcription of the gene of interest (GOI). In comparison, the translational fusion of GOI and the glucocorticoid receptor (GR) domain leads to the dexamethasone-dependent nuclear translocation of the GOI::GR protein. This chapter contains detailed protocols for the application of both systems in the model plants potato and Arabidopsis, respectively.

  1. Ultrasensitive Negative Feedback Control: A Natural Approach for the Design of Synthetic Controllers

    Science.gov (United States)

    Montefusco, Francesco; Akman, Ozgur E.; Soyer, Orkun S.; Bates, Declan G.

    2016-01-01

    Many of the most important potential applications of Synthetic Biology will require the ability to design and implement high performance feedback control systems that can accurately regulate the dynamics of multiple molecular species within the cell. Here, we argue that the use of design strategies based on combining ultrasensitive response dynamics with negative feedback represents a natural approach to this problem that fully exploits the strongly nonlinear nature of cellular information processing. We propose that such feedback mechanisms can explain the adaptive responses observed in one of the most widely studied biomolecular feedback systems—the yeast osmoregulatory response network. Based on our analysis of such system, we identify strong links with a well-known branch of mathematical systems theory from the field of Control Engineering, known as Sliding Mode Control. These insights allow us to develop design guidelines that can inform the construction of feedback controllers for synthetic biological systems. PMID:27537373

  2. Ability of TiO2(110) Surface to Be Fully Hydroxylated and Fully Reduced

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Zhitao; Garcia, Juan C.; Deskins, N. A.; Lyubinetsky, Igor

    2015-08-06

    Many TiO2 applications (e.g., in heterogeneous catalysis) involve contact with ambient atmosphere and/or water. The resulting hydroxylation can significantly alter its surface properties. While behavior of single, isolated OH species on the model metal oxide surface of rutile TiO2(110) is relatively well understood, much less is known regarding highly-hydroxylated surfaces and/or whether TiO2(110) could be fully-hydroxylated under ultra-high vacuum conditions. Here we report in situ formation of a well-ordered, fully-hydroxylated TiO2(110)-(1 x 1) surface using an enhanced photochemical approach, key parts of which are pre-dosing of water and multi-step dissociative adsorption and subsequent photolysis of the carboxylic (trimethyl acetic) acid. Combining scanning tunneling microscopy, ultra-violet photoelectron spectroscopy and density functional theory results, we show that the attained “super OH” surface is also fully-reduced, as a result of the photochemical trapping of electrons at the OH groups.

  3. Synthetic aperture radar capabilities in development

    Energy Technology Data Exchange (ETDEWEB)

    Miller, M. [Lawrence Livermore National Lab., CA (United States)

    1994-11-15

    The Imaging and Detection Program (IDP) within the Laser Program is currently developing an X-band Synthetic Aperture Radar (SAR) to support the Joint US/UK Radar Ocean Imaging Program. The radar system will be mounted in the program`s Airborne Experimental Test-Bed (AETB), where the initial mission is to image ocean surfaces and better understand the physics of low grazing angle backscatter. The Synthetic Aperture Radar presentation will discuss its overall functionality and a brief discussion on the AETB`s capabilities. Vital subsystems including radar, computer, navigation, antenna stabilization, and SAR focusing algorithms will be examined in more detail.

  4. Synthetic Hounsfield units from spectral CT data

    Science.gov (United States)

    Bornefalk, Hans

    2012-04-01

    Beam-hardening-free synthetic images with absolute CT numbers that radiologists are used to can be constructed from spectral CT data by forming ‘dichromatic’ images after basis decomposition. The CT numbers are accurate for all tissues and the method does not require additional reconstruction. This method prevents radiologists from having to relearn new rules-of-thumb regarding absolute CT numbers for various organs and conditions as conventional CT is replaced by spectral CT. Displaying the synthetic Hounsfield unit images side-by-side with images reconstructed for optimal detectability for a certain task can ease the transition from conventional to spectral CT.

  5. Tunable promoters in synthetic and systems biology

    DEFF Research Database (Denmark)

    Dehli, Tore; Solem, Christian; Jensen, Peter Ruhdal

    2012-01-01

    Synthetic and systems biologists need standardized, modular and orthogonal tools yielding predictable functions in vivo. In systems biology such tools are needed to quantitatively analyze the behavior of biological systems while the efficient engineering of artificial gene networks is central...... in synthetic biology. A number of tools exist to manipulate the steps in between gene sequence and functional protein in living cells, but out of these the most straight-forward approach is to alter the gene expression level by manipulating the promoter sequence. Some of the promoter tuning tools available...

  6. Tunable promoters in synthetic and systems biology

    DEFF Research Database (Denmark)

    Dehli, Tore; Solem, Christian; Jensen, Peter Ruhdal

    2012-01-01

    in synthetic biology. A number of tools exist to manipulate the steps in between gene sequence and functional protein in living cells, but out of these the most straight-forward approach is to alter the gene expression level by manipulating the promoter sequence. Some of the promoter tuning tools available......Synthetic and systems biologists need standardized, modular and orthogonal tools yielding predictable functions in vivo. In systems biology such tools are needed to quantitatively analyze the behavior of biological systems while the efficient engineering of artificial gene networks is central...

  7. Ionoluminescence of diamond, synthetic diamond and simulants

    Energy Technology Data Exchange (ETDEWEB)

    Calvo del Castillo, H. [Departamento de Geologia y Geoquimica, Facultad de Ciencias, Universidad Autonoma de Madrid, Ctra de Colmenar km 15, Madrid 27049 (Spain); Instituto de Fisica, Universidad Nacional Autonoma de Mexico, Circuito de la Investigacion Cientifica s/n, Ciudad Universitaria, Ciudad de Mexico 04519, Mexico, DF (Mexico); Ruvalcaba-Sil, J.L. [Instituto de Fisica, Universidad Nacional Autonoma de Mexico, Circuito de la Investigacion Cientifica s/n, Ciudad Universitaria, Ciudad de Mexico 04519, Mexico, DF (Mexico); Barboza-Flores, M. [Centro de Investigacio en Fisica, Universidad de Sonora, Apartado postal 5-088, Hermosillo, Sonora 83190 (Mexico); Belmont, E. [Instituto de Fisica, Universidad Nacional Autonoma de Mexico, Circuito de la Investigacion Cientifica s/n, Ciudad Universitaria, Ciudad de Mexico 04519, Mexico, DF (Mexico); Calderon, T. [Departamento de Geologia y Geoquimica, Facultad de Ciencias, Universidad Autonoma de Madrid, Ctra de Colmenar km 15, Madrid 27049 (Spain)], E-mail: tomas.calderon@uam.es

    2007-09-21

    Ionoluminescence (IL) spectra of diamond (natural samples and synthetic CVD) and its more common synthetic simulates such as sapphire, spinel, cubic zirconia, strontium titanate and yttrium aluminium garnet (YAG: Er) will be discussed here in order to support some criteria that will allow to distinguish between them. While diamond shows emission bands due to nitrogen defects, simulants feature d-transition metals and rare earths such as Cr{sup 3+}, Mn{sup 2+}, Fe{sup 3+}, Ti{sup 3+} and Er{sup 3+} emissions.

  8. New Synthetic Methods for Hypericum Natural Products

    Energy Technology Data Exchange (ETDEWEB)

    Jeon, Insik [Iowa State Univ., Ames, IA (United States)

    2006-01-01

    Organic chemistry has served as a solid foundation for interdisciplinary research areas, such as molecular biology and medicinal chemistry. An understanding of the biological activities and structural elucidations of natural products can lead to the development of clinically valuable therapeutic options. The advancements of modern synthetic methodologies allow for more elaborate and concise natural product syntheses. The theme of this study centers on the synthesis of natural products with particularly challenging structures and interesting biological activities. The synthetic expertise developed here will be applicable to analog syntheses and to other research problems.

  9. Synthetic heparin-binding factor analogs

    Science.gov (United States)

    Pena, Louis A.; Zamora, Paul O.; Lin, Xinhua; Glass, John D.

    2010-04-20

    The invention provides synthetic heparin-binding growth factor analogs having at least one peptide chain, and preferably two peptide chains branched from a dipeptide branch moiety composed of two trifunctional amino acid residues, which peptide chain or chains bind a heparin-binding growth factor receptor and are covalently bound to a non-signaling peptide that includes a heparin-binding domain, preferably by a linker, which may be a hydrophobic linker. The synthetic heparin-binding growth factor analogs are useful as pharmaceutical agents, soluble biologics or as surface coatings for medical devices.

  10. Synthetic biology of microbes synthesizing polyhydroxyalkanoates (PHA

    Directory of Open Access Journals (Sweden)

    Guo-Qiang Chen

    2016-12-01

    Full Text Available Microbial polyhydroxyalkanoates (PHA have been produced as bioplastics for various purposes. Under the support of China National Basic Research 973 Project, we developed synthetic biology methods to diversify the PHA structures into homo-, random, block polymers with improved properties to better meet various application requirements. At the same time, various pathways were assembled to produce various PHA from glucose as a simple carbon source. At the end, Halomonas bacteria were reconstructed to produce PHA in changing morphology for low cost production under unsterile and continuous conditions. The synthetic biology will advance the PHA into a bio- and material industry.

  11. Synthetic Biology: legal context and public policies

    Directory of Open Access Journals (Sweden)

    Vicente Bellver Capella

    2016-12-01

    Full Text Available The paper considers three questions with the goal of improving the proposals about the governance and regulation of Synthetic Biology. First, it looks at the relationship between some of the breakthroughs in this field and the public interest in the matter. Second, it is mentioned the international regulation on this topic and particularly the principles that inform and should inform this matter. Third, a critical consideration on the reports devoted to the ethical and social aspects of Synthetic Biology is included.

  12. Synthetic immunology: modulating the human immune system.

    Science.gov (United States)

    Geering, Barbara; Fussenegger, Martin

    2015-02-01

    Humans have manipulated the immune system to dampen or boost the immune response for thousands of years. As our understanding of fundamental immunology and biotechnological methodology accumulates, we can capitalize on this combined knowledge to engineer biological devices with the aim of rationally manipulating the immune response. We address therapeutic approaches based on the principles of synthetic immunology that either ameliorate disorders of the immune system by interfering with the immune response, or improve diverse pathogenic conditions by exploiting immune cell effector functions. We specifically highlight synthetic proteins investigated in preclinical and clinical trials, summarize studies that have used engineered immune cells, and finish with a discussion of possible future therapeutic concepts.

  13. RESEARCH ON CONSTRUCTING SYNTHETIC MATRIX IN AHP

    Institute of Scientific and Technical Information of China (English)

    XU Zeshui

    2002-01-01

    This paper presents a new method for constructing synthetic matrix whichis obtained by extending the given judgement matrices in the Analytic Hierarchy Process(AHP). The consistency relationship among the given matrices and their synthetic matrixis studied. The method can be used to deal with situations where the number of the givenalternatives is larger than nine, and needs less pairwise comparisons than any others. Thusit will aid in the design of the AHP, which will reduce the information overload of decisionmaker, a major drawback of the original AHP algorithm. Finally, a numerical example isgiven to show the feasibility and effectiveness of the method.

  14. Functional mining of transporters using synthetic selections

    DEFF Research Database (Denmark)

    Genee, Hans Jasper; Bali, Anne Pihl; Petersen, Søren Dalsgård;

    2016-01-01

    -responsive biosensor systems that enable selective growth of cells only if they encode a ligand-specific importer. We developed such a synthetic selection system for thiamine pyrophosphate and mined soil and gut metagenomes for thiamine-uptake functions. We identified several members of a novel class of thiamine...... transporters, PnuT, which is widely distributed across multiple bacterial phyla. We demonstrate that with modular replacement of the biosensor, we could expand our method to xanthine and identify xanthine permeases from gut and soil metagenomes. Our results demonstrate how synthetic-biology approaches can...

  15. Realizing the potential of synthetic biology.

    Science.gov (United States)

    Church, George M; Elowitz, Michael B; Smolke, Christina D; Voigt, Christopher A; Weiss, Ron

    2014-04-01

    Synthetic biology, despite still being in its infancy, is increasingly providing valuable information for applications in the clinic, the biotechnology industry and in basic molecular research. Both its unique potential and the challenges it presents have brought together the expertise of an eclectic group of scientists, from cell biologists to engineers. In this Viewpoint article, five experts discuss their views on the future of synthetic biology, on its main achievements in basic and applied science, and on the bioethical issues that are associated with the design of new biological systems.

  16. Multi-antenna synthetic aperture radar

    CERN Document Server

    Wang, Wen-Qin

    2013-01-01

    Synthetic aperture radar (SAR) is a well-known remote sensing technique, but conventional single-antenna SAR is inherently limited by the minimum antenna area constraint. Although there are still technical issues to overcome, multi-antenna SAR offers many benefits, from improved system gain to increased degrees-of-freedom and system flexibility. Multi-Antenna Synthetic Aperture Radar explores the potential and challenges of using multi-antenna SAR in microwave remote sensing applications. These applications include high-resolution imaging, wide-swath remote sensing, ground moving target indica

  17. Reactive Transport Modeling of Induced Calcite Precipitation Reaction Fronts in Porous Media Using A Parallel, Fully Coupled, Fully Implicit Approach

    Science.gov (United States)

    Guo, L.; Huang, H.; Gaston, D.; Redden, G. D.; Fox, D. T.; Fujita, Y.

    2010-12-01

    Inducing mineral precipitation in the subsurface is one potential strategy for immobilizing trace metal and radionuclide contaminants. Generating mineral precipitates in situ can be achieved by manipulating chemical conditions, typically through injection or in situ generation of reactants. How these reactants transport, mix and react within the medium controls the spatial distribution and composition of the resulting mineral phases. Multiple processes, including fluid flow, dispersive/diffusive transport of reactants, biogeochemical reactions and changes in porosity-permeability, are tightly coupled over a number of scales. Numerical modeling can be used to investigate the nonlinear coupling effects of these processes which are quite challenging to explore experimentally. Many subsurface reactive transport simulators employ a de-coupled or operator-splitting approach where transport equations and batch chemistry reactions are solved sequentially. However, such an approach has limited applicability for biogeochemical systems with fast kinetics and strong coupling between chemical reactions and medium properties. A massively parallel, fully coupled, fully implicit Reactive Transport simulator (referred to as “RAT”) based on a parallel multi-physics object-oriented simulation framework (MOOSE) has been developed at the Idaho National Laboratory. Within this simulator, systems of transport and reaction equations can be solved simultaneously in a fully coupled, fully implicit manner using the Jacobian Free Newton-Krylov (JFNK) method with additional advanced computing capabilities such as (1) physics-based preconditioning for solution convergence acceleration, (2) massively parallel computing and scalability, and (3) adaptive mesh refinements for 2D and 3D structured and unstructured mesh. The simulator was first tested against analytical solutions, then applied to simulating induced calcium carbonate mineral precipitation in 1D columns and 2D flow cells as analogs

  18. Modified sequential fully implicit scheme for compositional flow simulation

    Science.gov (United States)

    Moncorgé, A.; Tchelepi, H. A.; Jenny, P.

    2017-05-01

    The fully implicit (FI) method is widely used for numerical modeling of multiphase flow and transport in porous media. The FI method is unconditionally stable, but that comes at the cost of a low-order approximation and high computational cost. The FI method entails iterative linearization and solution of fully-coupled linear systems with mixed elliptic/hyperbolic character. However, in methods that treat the near-elliptic (flow) and hyperbolic (transport) separately, such as multiscale formulations, sequential solution strategies are used to couple the flow (pressures and velocities) and the transport (saturations/compositions). The most common sequential schemes are: the implicit pressure explicit saturation (IMPES), and the sequential fully implicit (SFI) schemes. Problems of practical interest often involve tightly coupled nonlinear interactions between the multiphase flow and the multi-component transport. For such problems, the IMPES approach usually suffers from prohibitively small timesteps in order to obtain stable numerical solutions. The SFI method, on the other hand, does not suffer from a temporal stability limit, but the convergence rate can be extremely slow. This slow convergence rate of SFI can offset the gains obtained from separate and specialized treatments of the flow and transport problems. In this paper, we analyze the nonlinear coupling between flow and transport for compressible, compositional systems with complex interphase mass transfer. We isolate the nonlinear effects related to transmissibility and compressibility from those due to interphase mass transfer, and we propose a modified SFI (m-SFI) method. The new scheme involves enriching the 'standard' pressure equation with coupling between the pressure and the saturations/compositions. The modification resolves the convergence problems associated with SFI and provides a strong basis for using sequential formulations for general-purpose simulation. For a wide parameter range, we show

  19. Water diffusion in fully hydrated porcine stratum corneum

    Energy Technology Data Exchange (ETDEWEB)

    Pieper, J.; Charalambopoulou, G.; Steriotis, Th.; Vasenkov, S.; Desmedt, A.; Lechner, R.E

    2003-08-01

    The microscopic mechanisms of water diffusion in fully hydrated porcine stratum corneum (SC) have been studied by a combination of incoherent quasielastic neutron scattering (QENS) and pulsed field gradient-nuclear magnetic resonance (PFG-NMR) for two sample orientations. The presence of three types of water in fully hydrated SC is inferred on the basis of water sorption isotherm data, i.e., (a) bound and (b) weakly bound hydration water forming layers between adjacent lipid bilayers of SC, as well as (c) bulk water probably located in the corneocytes and in intercellular regions. Water self-diffusion coefficients for motions parallel and perpendicular to the membrane plane of D{sub parallel}=3.30x10{sup -10} m{sup 2}/s and D{sub perpendicular}=1.56x10{sup -10} m{sup 2}/s, respectively, were determined by PFG-NMR and assigned to the translational diffusion of weakly bound water. QENS measurements have been carried out using different samples hydrated with H{sub 2}O and D{sub 2}O, respectively, in order to separate the contribution of SC from that of the water. The QENS data for both sample orientations and two different energy resolutions can be fitted by a model which accounts for the microscopic dynamics of all three aforementioned types of water. This analysis establishes rotational diffusion coefficients for bound and weakly bound hydration water of 0.025 and 0.030 meV, respectively. Furthermore, the QENS data prove the presence of bulk water in fully hydrated SC samples.

  20. Fully differential NLO predictions for the rare muon decay

    Science.gov (United States)

    Pruna, G. M.; Signer, A.; Ulrich, Y.

    2017-02-01

    Using the automation program GoSam, fully differential NLO corrections were obtained for the rare decay of the muon μ → eν ν bar ee. This process is an important Standard Model background to searches of the Mu3e Collaboration for lepton-flavor violation, as it becomes indistinguishable from the signal μ → 3 e if the neutrinos carry little energy. With our NLO program we are able to compute the branching ratio as well as custom-tailored observables for the experiment. With minor modifications, related decays of the tau can also be computed.

  1. Singular solutions of fully nonlinear elliptic equations and applications

    CERN Document Server

    Armstrong, Scott N; Smart, Charles K

    2011-01-01

    We study the properties of solutions of fully nonlinear, positively homogeneous elliptic equations near boundary points of Lipschitz domains at which the solution may be singular. We show that these equations have two positive solutions in each cone of $\\mathbb{R}^n$, and the solutions are unique in an appropriate sense. We introduce a new method for analyzing the behavior of solutions near certain Lipschitz boundary points, which permits us to classify isolated boundary singularities of solutions which are bounded from either above or below. We also obtain a sharp Phragm\\'en-Lindel\\"of result as well as a principle of positive singularities in certain Lipschitz domains.

  2. Image-restoration algorithms for a fully connected architecture.

    Science.gov (United States)

    Abbiss, J B; Brames, B J; Byrne, C L; Fiddy, M A

    1990-06-15

    We describe the implementation of a technique for achieving image superresolution using a fully connected network of simple processors operating in an iterative mode. We show that an updating scheme can be specified that ensures convergence for the serial (asynchronous) updating case. With the appropriate hardware, parallel (synchronous) updating becomes of particular interest because of the potential for accelerated convergence; it is this approach that we envisage implementing in optical hardware. For this case also, we present a convergent scheme that can be related to a regularized form of the Gerchberg-Papoulis algorithm.

  3. Towards Fully Converged GW Calculations for Large Systems

    CERN Document Server

    Gao, Weiwei; Gao, Xiang; Zhang, Peihong

    2016-01-01

    Although the GW approximation is recognized as one of the most accurate theories for predicting materials excited states properties, scaling up conventional GW calculations for large systems remains a major challenge. We present a powerful and simple-to-implement method that can drastically accelerate fully converged GW calculations for large systems. We demonstrate the performance of this new method by calculating the quasiparticle band gap of MgO supercells. A speed-up factor of nearly two orders of magnitude is achieved for a system contaning 256 atoms (1024 velence electrons) with a negligibly small numerical error of $\\pm 0.03$ eV.

  4. A fully woven touchpad sensor based on soft capacitor fibers

    CERN Document Server

    Gu, Jian Feng; Skorobogatiy, Maksim

    2011-01-01

    A novel, highly flexible capacitor fiber (with 100 nF m-1 typical capacitance per length) having a multilayer periodic structure of dielectric and conductive polymer composite films is fabricated by drawing technique. The fiber is used to build a woven touchpad sensor. Then, we study the influence of the fiber length, capacitance and volume resistivity on the touch sensing performance. A theoretical ladder network model of a fiber network is developed. A fully woven textile sample incorporating one-dimension array of the capacitor fibers is fabricated. Finally we show that such an array functions as a two-dimensional touch sensor.

  5. Fully automatized quantum cascade laser design by genetic optimization

    Science.gov (United States)

    Bismuto, A.; Terazzi, R.; Hinkov, B.; Beck, M.; Faist, J.

    2012-07-01

    Using a transport model based on the density matrix formalism, a fully automatized technique to design quantum cascade structures in the mid-infrared is presented that implements a genetic algorithm where the wallplug efficiency has been used as merit factor. Starting from a reference design, the model converges after few generations on an optimized design that presents a better carrier injection in the upper lasing state. Both the designs have been fabricated using buried heterostructure process and the optimized design shows a pronounced increase in the laser operation range and higher output powers. In good agreement with the simulations, the laser efficiency increases from 5% to 12%.

  6. Continuity waves in fully resolved simulations of settling particles

    Science.gov (United States)

    Willen, Daniel; Sierakowski, Adam; Prosperetti, Andrea

    2016-11-01

    Fully resolved simulations of 500 to 2,000 particles settling in a fluid have been conducted with the Physalis method. A new approach to the reconstruction of pseudo-continuum fields is described and is used to examine the results with the purpose of identifying concentration waves. The velocity of concentration waves is successfully deduced from the simulations. A comparison of the results with continuity wave theory shows good agreement. Several new insights about the particle microstructure conditionally averaged on volume fraction and velocity are also described. This work is supported by NSF award CBET1335965.

  7. Electronically Tunable Fully Integrated Fractional-Order Resonator

    KAUST Repository

    Tsirimokou, Georgia

    2017-03-20

    A fully integrated implementation of a parallel fractional-order resonator which employs together a fractional order capacitor and a fractional-order inductor is proposed in this paper. The design utilizes current-controlled Operational Transconductance Amplifiers as building blocks, designed and fabricated in AMS 0:35m CMOS process, and based on a second-order approximation of a fractional-order differentiator/ integrator magnitude optimized in the range 10Hz–700Hz. An attractive benefit of the proposed scheme is its electronic tuning capability.

  8. FlashCam: A fully digital camera for CTA telescopes

    CERN Document Server

    Pühlhofer, G; Biland, A; Florin, D; Föhr, C; Gadola, A; Hermann, G; Kalkuhl, C; Kasperek, J; Kihm, T; Koziol, J; Manalaysay, A; Marszalek, A; Rajda, P J; Schanz, T; Steiner, S; Straumann, U; Tenzer, C; Vogler, P; Vollhardt, A; Weitzel, Q; Winiarski, K; Zietara, K

    2012-01-01

    The future Cherenkov Telescope Array (CTA) will consist of several tens of telescopes of different mirror sizes. CTA will provide next generation sensitivity to very high energy photons from few tens of GeV to >100 TeV. Several focal plane instrumentation options are currently being evaluated inside the CTA consortium. In this paper, the current status of the FlashCam prototyping project is described. FlashCam is based on a fully digital camera readout concept and features a clean separation between photon detector plane and signal digitization/triggering electronics.

  9. Mitsunobu Reactions Catalytic in Phosphine and a Fully Catalytic System.

    Science.gov (United States)

    Buonomo, Joseph A; Aldrich, Courtney C

    2015-10-26

    The Mitsunobu reaction is renowned for its mild reaction conditions and broad substrate tolerance, but has limited utility in process chemistry and industrial applications due to poor atom economy and the generation of stoichiometric phosphine oxide and hydrazine by-products that complicate purification. A catalytic Mitsunobu reaction using innocuous reagents to recycle these by-products would overcome both of these shortcomings. Herein we report a protocol that is catalytic in phosphine (1-phenylphospholane) employing phenylsilane to recycle the catalyst. Integration of this phosphine catalytic cycle with Taniguchi's azocarboxylate catalytic system provided the first fully catalytic Mitsunobu reaction.

  10. Influence of landfill structures on stabilization of fully recycled leachate

    Institute of Scientific and Technical Information of China (English)

    2006-01-01

    The experiment was conducted to treat the leachate from two simulating columns by recycling to the columns themselves without being discharged into the enviroment. The columns were employed to simulate anaerobic and semi-aerobic landfills separately. The influence of landfill structure on stabilization of fully recycled leachate was studied. The results show that semi-aerobic landfill structure accelerates the stabilization of leachate recycled. The full recycle of leachate in semi-aerobic landfill is a very feasible and effective technology for leachate treatment with low cost and energy saving especially in arid and rare rainfall regions. Meanwhile, the environmental impact of landfill can be greatly minimized.

  11. Fully differential NLO predictions for the rare muon decay

    Directory of Open Access Journals (Sweden)

    G.M. Pruna

    2017-02-01

    Full Text Available Using the automation program GoSam, fully differential NLO corrections were obtained for the rare decay of the muon μ→eνν¯ee. This process is an important Standard Model background to searches of the Mu3e Collaboration for lepton-flavor violation, as it becomes indistinguishable from the signal μ→3e if the neutrinos carry little energy. With our NLO program we are able to compute the branching ratio as well as custom-tailored observables for the experiment. With minor modifications, related decays of the tau can also be computed.

  12. Fully integrated wireless inductive tongue computer interface for disabled people.

    Science.gov (United States)

    Struijk, Lotte N S Andreasen; Lontis, Eugen Romulus; Bentsen, Bo; Christensen, Henrik Vie; Caltenco, Hector A; Lund, Morten Enemark

    2009-01-01

    This work describes a novel fully integrated inductive tongue computer interface for disabled people. The interface consists of an oral unit placed in the mouth, including inductive sensors, related electronics, a system for wireless transmission and a rechargeable battery. The system is activated using an activation unit placed on the tongue, and incorporates 18 inductive sensors, arranged in both a key area and a mouse-pad area. The system's functionality was demonstrated in a pilot experiment, where a typing rate of up to 70 characters/minute was obtained with an error rate of 3%. Future work will include tests with disabled subjects.

  13. Moving towards a Competitive Fully Enzymatic Biodiesel Process

    Directory of Open Access Journals (Sweden)

    Silvia Cesarini

    2015-06-01

    Full Text Available Enzymatic biodiesel synthesis can solve several problems posed by the alkaline-catalyzed transesterification but it has the drawback of being too expensive to be considered competitive. Costs can be reduced by lipase improvement, use of unrefined oils, evaluation of soluble/immobilized lipase preparations, and by combination of phospholipases with a soluble lipase for biodiesel production in a single step. As shown here, convenient natural tools have been developed that allow synthesis of high quality FAMEs (EN14214 from unrefined oils in a completely enzymatic single-step process, making it fully competitive.

  14. A novel fully differential telescopic operational transconductance amplifier

    Energy Technology Data Exchange (ETDEWEB)

    Li Tianwang; Jiang Jinguang [Department of Integrated Circuits and Communication Software, International School of Software, Wuhan University, Wuhan 430079 (China); Ye Bo, E-mail: jgjiang95@yahoo.com.c [Faculty of Computer and Information Engineering, Shanghai University of Electric Power, Shanghai 200090 (China)

    2009-08-15

    A novel fully differential telescopic operational transconductance amplifier (OTA) is proposed. An additional PMOS differential pair is introduced to improve the unit-gain bandwidth of the telescopic amplifier. At the same time, the slew rate is enhanced by the auxiliary slew rate boost circuits. The proposed OTA is designed in a 0.18{mu}m CMOS process. Simulation results show that there is a 49% improvement in the unit-gain bandwidth compared to that of a conventional OTA; moreover, the DC gain and the slew rate are also enhanced. (semiconductor integrated circuits)

  15. Description and calibration of a fully automated infrared scatterometer

    Science.gov (United States)

    Mainguy, Stephane; Olivier, Michel; Josse, Michel A.; Guidon, Michel

    1991-12-01

    A fully automated scatterometer, designed for BRDF measurements in the IR at about 10 micrometers , is described. Basically, it works around a reflecting parabola (464 mm diameter, F/0.25) and permits measurements in and out of the plane of incidence. Optical properties of the parabolic mirror are emphasized by a ray-tracing technique which permits determination of the correct illumination on the sample and detection conditions of scattered light. Advantages and drawbacks of such an instrument are discussed, as well as calibration procedures. As a conclusion, we present experimental results to illustrate the instrument capabilities.

  16. Discarding of cod in the Danish Fully Documented Fisheries trials

    DEFF Research Database (Denmark)

    Ulrich, Clara; Olesen, Hans Jakob; Bergsson, Heidrikur

    2015-01-01

    Denmarkwas the first nation in Europe to promote the use of Fully Documented Fisheries (FDF) through Remote Electronic Monitoring (REM) and CCTV camera systems, with pilot schemes in place since 2008. In theory, such a scheme could supplement and even potentially replace expensive control...... and monitoring programmes; and when associated with a catch quota management (CQM) system, incentivize positive changes in fishing patterns in a results-based management approach. Newdata flows are, however, required to ensure the practical implementation of such a scheme. This paper reviews the quality...

  17. Design and Analysis of Fully Integrated Differential VCOs

    Directory of Open Access Journals (Sweden)

    M. Prochaska

    2005-01-01

    Full Text Available Oscillators play a decisive role for electronic equipment in many fields - like communication, navigation or data processing. Especially oscillators are key building blocks in integrated transceivers for wired and wireless communication systems. In this context the study of fully integrated differential VCOs has received attention. In this paper we present an analytic analysis of the steady state oscillation of integrated differential VCOs which is based on a nonlinear model of the oscillator. The outcomes of this are design formulas for the amplitude as well as the stability of the oscillator which take the nonlinearity of the circuit into account.

  18. Double transitions in the fully frustrated XY model

    Science.gov (United States)

    Jeon, Gun Sang; Park, Sung Yong; Choi, M. Y.

    1997-06-01

    The fully frustrated XY model is studied via the position-space renormalization group approach. The model is mapped into two coupled XY models, for which the scaling equations are derived. By integrating directly the scaling equations, we observe that there exists a narrow temperature range in which both the vortex and coupling charge fugacities grow large, suggesting double transitions in the system. While the transition at lower temperature is identified to be of the Kosterlitz-Thouless type, the higher-temperature one appears not to be of the Ising universality class.

  19. STS-100 MS Phillips is fully suited up for launch

    Science.gov (United States)

    2001-01-01

    KENNEDY SPACE CENTER, Fla. - STS-100 Mission Specialist John L. Phillips is fully suited for launch. The 11-day mission to the International Space Station will deliver and integrate the Spacelab Logistics Pallet/Launch Deployment Assembly, which includes the Space Station Remote Manipulator system and the UHF Antenna, and the Multi-Purpose Logistics Module Raffaello. The mission includes two planned spacewalks for installation of the SSRMS. The mission is also the inaugural flight of Raffaello, carrying resupply stowage racks and resupply/return stowage platforms. Liftoff on mission STS-100 is scheduled at 2:41 p.m. EDT April 19.

  20. Fully vectorial accelerating diffraction-free Helmholtz beams.

    Science.gov (United States)

    Aleahmad, Parinaz; Miri, Mohammad-Ali; Mills, Matthew S; Kaminer, Ido; Segev, Mordechai; Christodoulides, Demetrios N

    2012-11-16

    We show that new families of diffraction-free nonparaxial accelerating optical beams can be generated by considering the symmetries of the underlying vectorial Helmholtz equation. Both two-dimensional transverse electric and magnetic accelerating wave fronts are possible, capable of moving along elliptic trajectories. Experimental results corroborate these predictions when these waves are launched from either the major or minor axis of the ellipse. In addition, three-dimensional spherical nondiffracting field configurations are presented along with their evolution dynamics. Finally, fully vectorial self-similar accelerating optical wave solutions are obtained via oblate-prolate spheroidal wave functions. In all occasions, these effects are illustrated via pertinent examples.

  1. A fully robust PARAFAC method for analyzing fluorescence data

    DEFF Research Database (Denmark)

    Engelen, Sanne; Frosch, Stina; Jørgensen, Bo

    2009-01-01

    Parallel factor analysis (PARAFAC) is a widespread method for modeling fluorescence data by means of an alternating least squares procedure. Consequently, the PARAFAC estimates are highly influenced by outlying excitation–emission landscapes (EEM) and element-wise outliers, like for example Raman......, there still exists no robust method for handling fluorescence data encountering both outlying EEM landscapes and scatter. In this paper, we present an iterative algorithm where the robust PARAFAC method and the scatter identification tool are alternately performed. A fully automated robust PARAFAC method...

  2. A fully adaptive hybrid optimization of aircraft engine blades

    Science.gov (United States)

    Dumas, L.; Druez, B.; Lecerf, N.

    2009-10-01

    A new fully adaptive hybrid optimization method (AHM) has been developed and applied to an industrial problem in the field of the aircraft engine industry. The adaptivity of the coupling between a global search by a population-based method (Genetic Algorithms or Evolution Strategies) and the local search by a descent method has been particularly emphasized. On various analytical test cases, the AHM method overperforms the original global search method in terms of computational time and accuracy. The results obtained on the industrial case have also confirmed the interest of AHM for the design of new and original solutions in an affordable time.

  3. Procurement of a fully licensed radioisotope thermoelectric generator transportation system

    Science.gov (United States)

    Adkins, Harold E.; Bearden, Thomas E.

    1991-01-01

    A fully licensed transportation system for Radioisotope Thermoelectric Generators and Light-Weight Radioisotope Heater Units is currently being designed and built. The system will comply with all applicable U.S. Department of Transportation regulations without the use of a ``DOE Alternative.'' The U.S. Department of Transportation has special ``double containment'' requirements for plutonium. The system packaging uses a doubly contained ``bell jar'' concept. A refrigerated trailer is used for cooling the high-heat payloads. The same packaging is used for both high- and low-heat payloads. The system is scheduled to be available for use by mid-1992.

  4. Review on Opinion Mining for Fully Fledged System

    Directory of Open Access Journals (Sweden)

    Asmita Dhokrat

    2016-06-01

    Full Text Available Humans communication is generally under the control of emotions and full of opinions. Emotions and their opinions plays an important role in thinking process of mind, influences the human actions too. Sentiment analysis is one of the ways to explore user’s opinion made on any social media and networking site for various commercial applications in number of fields. This paper takes into account the basis requirements of opinion mining to explore the present techniques used to develop a fully fledged system. Is highlights the opportunities or deployment and research of such systems. The available tools used for building such applications have even presented with their merits and limitations.

  5. Monitoring of aquifer pump tests with Magnetic Resonance Sounding (MRS): a synthetic case study

    DEFF Research Database (Denmark)

    Herckenrath, Daan; Auken, E.; Bauer-Gottwein, Peter

    2011-01-01

    calculates the MRS-signal generated by an aquifer pump test. A synthetic MRS-dataset was subsequently used to determine the hydrogeological parameters in an inverse parameter estimation approach. This was done for a virtual pump test with a partially and a fully penetrating well. With the MRS data we were...... able to retrieve the hydrogeological parameters of the aquifer. However, the differences in MRS signal in time were small compared to the electromagnetic noise. This limits the applicability of the MRS technique for pump tests in which a partially penetrating pumping well is used, as the limited...... drawdown around the extraction well causes smaller changes in received signal....

  6. Segmentation of synthetic aperture radar image using multiscale information measure-based spectral clustering

    Institute of Scientific and Technical Information of China (English)

    Haixia Xu; Zheng Tian; Mingtao Ding

    2008-01-01

    @@ A multiscale information measure (MIM), calculable from per-pixel wavelet coefficients, but relying on global statistics of synthetic aperture radar (SAR) image, is proposed. It fully exploits the variations in speckle pattern when the image resolution varies from course to fine, thus it can capture the intrinsic texture of the scene backscatter and the texture due to speckle simultaneously. Graph spectral segmentation methods based on MIM and the usual similarity measure are carried out on two real SAR images.Experimental results show that MIM can characterize texture information of SAR image more effectively than the commonly used similarity measure.

  7. Synthetic and biogenic magnetite nanoparticles for tracking of stem cells and dendritic cells

    Energy Technology Data Exchange (ETDEWEB)

    Schwarz, Sebastian [Institute for Biomedical Engineering, Department of Cell Biology, RWTH Aachen University Medical School, Pauwelsstrasse 30, 52074 Aachen (Germany); Helmholtz Institute for Biomedical Engineering, Department of Cell Biology, RWTH Aachen, Pauwelsstrasse 20, 52074 Aachen (Germany); Fernandes, Fabiana [Institute for Biomedical Engineering, Department of Cell Biology, RWTH Aachen University Medical School, Pauwelsstrasse 30, 52074 Aachen (Germany); Department of Biological Engineering, University of Minho, Campus de Gualtar, 4710-057 Braga (Portugal); Sanroman, Laura [Institute for Biomedical Engineering, Department of Cell Biology, RWTH Aachen University Medical School, Pauwelsstrasse 30, 52074 Aachen (Germany); Helmholtz Institute for Biomedical Engineering, Department of Cell Biology, RWTH Aachen, Pauwelsstrasse 20, 52074 Aachen (Germany); Hodenius, Michael [Institute for Biomedical Engineering and Helmholtz Institute for Biomedical Engineering, Department of Applied Medical Engineering, RWTH Aachen, Pauwelsstrasse 20, 52074 Aachen (Germany); Lang, Claus [Department of Microbiology, Ludwig-Maximillians-University of Munich, Maria-Ward-Str. 1a, 80638 Munich (Germany); Himmelreich, Uwe [In-vivo-NMR-Laboratory, Max-Planck-Institute for Neurological Research, Gleueler Str. 50, 50931 Cologne (Germany); Biomedical NMR Unit, MoSAIC, Faculty of Medicine, KU Leuven, Onderwijs en Navorsing 1, bus 505, 3000 Leuven (Belgium); Schmitz-Rode, Thomas [Institute for Biomedical Engineering and Helmholtz Institute for Biomedical Engineering, Department of Applied Medical Engineering, RWTH Aachen, Pauwelsstrasse 20, 52074 Aachen (Germany); Schueler, Dirk [Department of Microbiology, Ludwig-Maximillians-University of Munich, Maria-Ward-Str. 1a, 80638 Munich (Germany); Hoehn, Mathias [In-vivo-NMR-Laboratory, Max-Planck-Institute for Neurological Research, Gleueler Str. 50, 50931 Cologne (Germany)] (and others)

    2009-05-15

    Accurate delivery of cells to target organs is critical for success of cell-based therapies with stem cells or immune cells such as antigen-presenting dendritic cells (DC). Labeling with contrast agents before implantation provides a powerful means for monitoring cellular migration using magnetic resonance imaging (MRI). In this study, we investigated the uptake of fully synthesized or bacterial magnetic nanoparticles (MNPs) into hematopoietic Flt3{sup +} stem cells and DC from mouse bone marrow. We show that (i) uptake of both synthetic and biogenic nanoparticles into cells endow magnetic activity and (ii) low numbers of MNP-loaded cells are readily detected by MRI.

  8. Synthetic tsunamis along the Israeli coast.

    Science.gov (United States)

    Tobias, Joshua; Stiassnie, Michael

    2012-04-13

    The new mathematical model for tsunami evolution by Tobias & Stiassnie (Tobias & Stiassnie 2011 J. Geophys. Res. Oceans 116, C06026) is used to derive a synthetic tsunami database for the southern part of the Eastern Mediterranean coast. Information about coastal tsunami amplitudes, half-periods, currents and inundation levels is presented.

  9. 78 FR 22209 - Additional Synthetic Drug Testing

    Science.gov (United States)

    2013-04-15

    ... COMMISSION 10 CFR Part 26 Additional Synthetic Drug Testing AGENCY: Nuclear Regulatory Commission. ACTION... NRC amend its Fitness for Duty program regulations to amend drug testing requirements to test for... raised in the PRM are appropriate for consideration in an ongoing rulemaking on Drug and Alcohol Testing...

  10. Wind energy applications of synthetic aperture radar

    DEFF Research Database (Denmark)

    Badger, Merete

    Synthetic aperture radars (SAR), mounted on satellites or aircraft, have proven useful for ocean wind mapping. Wind speeds at the height 10 m may be retrieved from measurements of radar backscatter using empirical model functions. The resulting windfields are valuable in offshore wind energy...

  11. 21 CFR 175.250 - Paraffin (synthetic).

    Science.gov (United States)

    2010-04-01

    ... its components by a solvent separation method, using synthetic isoparaffinic petroleum hydrocarbons... HUMAN CONSUMPTION (CONTINUED) INDIRECT FOOD ADDITIVES: ADHESIVES AND COMPONENTS OF COATINGS Substances... determined by ASTM method D938-71 (Reapproved 1981), “Standard Test Method for Congealing Point of...

  12. A NEW SYNTHETIC FUNCTIONALIZED ANTIGEN CARRIER

    NARCIS (Netherlands)

    DRIJFHOUT, JW; BLOEMHOFF, W

    1991-01-01

    A new synthetic functionalized antigen carrier is described. It consists of a core of seven branched lysine residues, of which each of the four N-terminal lysine residues contains two N-(S-acetylmercaptoacetyl)-glutamyl residues. After removal of the protecting S-acetyl groups affording eight thiol

  13. Parity-Time Synthetic Phononic Media

    DEFF Research Database (Denmark)

    Christensen, Johan; Willatzen, Morten; Velasco, V. R.

    2016-01-01

    , are achieved through electrically biased piezoelectric semiconductors. We study first how wave attenuation and amplification can be tuned, and when combined, can give rise to a phononic PT synthetic media with unidirectional suppressed reflectance, a feature directly applicable to evading sonar detection....

  14. A new synthetic approach to phosphatidylethanolamine

    Institute of Scientific and Technical Information of China (English)

    Yang Song; Wei Yuan; Yu Luo; Wei Lu

    2012-01-01

    A new synthetic method for phosphatidylethanolamine head group was developed via ring-opening of cyclic dioxaphospholane 2 with sodium azide and subsequent hydrogenation.The advantage of this strategy included short reaction steps,readily available materials and good yields.

  15. Super-Resolution for Synthetic Zooming

    Directory of Open Access Journals (Sweden)

    Li Xin

    2006-01-01

    Full Text Available Optical zooming is an important feature of imaging systems. In this paper, we investigate a low-cost signal processing alternative to optical zooming—synthetic zooming by super-resolution (SR techniques. Synthetic zooming is achieved by registering a sequence of low-resolution (LR images acquired at varying focal lengths and reconstructing the SR image at a larger focal length or increased spatial resolution. Under the assumptions of constant scene depth and zooming speed, we argue that the motion trajectories of all physical points are related to each other by a unique vanishing point and present a robust technique for estimating its D coordinate. Such a line-geometry-based registration is the foundation of SR for synthetic zooming. We address the issue of data inconsistency arising from the varying focal length of optical lens during the zooming process. To overcome the difficulty of data inconsistency, we propose a two-stage Delaunay-triangulation-based interpolation for fusing the LR image data. We also present a PDE-based nonlinear deblurring to accommodate the blindness and variation of sensor point spread functions. Simulation results with real-world images have verified the effectiveness of the proposed SR techniques for synthetic zooming.

  16. Using Synthetic Kerosene in Civil Jet Aircraft

    NARCIS (Netherlands)

    Snijders, T.A.; Melkert, J.A.

    2008-01-01

    TU Delft in the Netherlands is performing research into the effects of the use of synthetic kerosene in aircraft. The research program consists of both desk research and tests. In the desk research gas turbine simulations will be combined with payload range performance calculations to show engine ef

  17. Chemical synthetic biology: a mini-review

    Directory of Open Access Journals (Sweden)

    Cristiano eChiarabelli

    2013-09-01

    Full Text Available Chemical synthetic biology (CSB is a branch of synthetic biology (SB oriented towards the synthesis of chemical structures alternative to those present in nature. Whereas SB combines biology and engineering with the aim of synthesizing biological structures or life forms that do not exist in nature – often based on genome manipulation, CSB uses and assembles biological parts, synthetic or not, to create new and alternative structures. A short epistemological note will introduce the theoretical concepts related to these fields, whereas the text will be largely devoted to introduce and comment two main projects of CSB, carried out in our laboratory in the recent years.The Never Born Biopolymers (NBB project deals with the construction and the screening of RNA and peptide sequences that are not present in nature, whereas the Minimal Cell project focuses on the construction of semi-synthetic compartments (usually liposomes containing the minimal and sufficient number of components to perform the basic function of a biological cell.These two topics are extremely important for both the general understanding of biology in terms of function, organization and development, and for applied biotechnology.

  18. Using Synthetic Kerosene in Civil Jet Aircraft

    NARCIS (Netherlands)

    Snijders, T.A.; Melkert, J.A.

    2008-01-01

    TU Delft in the Netherlands is performing research into the effects of the use of synthetic kerosene in aircraft. The research program consists of both desk research and tests. In the desk research gas turbine simulations will be combined with payload range performance calculations to show engine

  19. High frame rate synthetic aperture duplex imaging

    DEFF Research Database (Denmark)

    Stuart, Matthias Bo; Tomov, Borislav Gueorguiev; Pihl, Michael Johannes

    2013-01-01

    aperture flow imaging as demonstrated in this paper. Synthetic aperture, directional beamforming, and cross-correlation are used to produce B-mode and vector velocity images at high frame rates. The frame rate equals the effective pulse repetition frequency of each imaging mode. Emissions for making the B...

  20. SYNTHETIC AGB EVOLUTION .1. A NEW MODEL

    NARCIS (Netherlands)

    GROENEWEGEN, MAT; DEJONG, T

    1993-01-01

    We have constructed a model to calculate in a synthetic way the evolution of stars on the asymptotic giant branch (AGB). The evolution is started at the first thermal pulse (TP) and is terminated when the envelope mass has been lost due to mass loss or when the core mass reaches the Chandrasekhar ma

  1. Standardization for natural product synthetic biology

    NARCIS (Netherlands)

    Zhao, Huimin; Medema, Marnix H.

    2016-01-01

    Standardization is one of the foundational features of modern-day engineering, and the use of standardized parts and processes is a key element that distinguishes bona fide synthetic biology from traditional genetic engineering. Here, we discuss the role of standardization in natural product

  2. News: Synthetic biology leading to specialty chemicals

    Science.gov (United States)

    Synthetic biology can combine the disciplines of biology, engineering, and chemistry productively to form molecules of great scientific and commercial value. Recent advances in the new field are explored for their connection to new tools that have been used to elucidate productio...

  3. CO2 Capture with Enzyme Synthetic Analogue

    Energy Technology Data Exchange (ETDEWEB)

    Cordatos, Harry

    2010-11-08

    Overview of an ongoing, 2 year research project partially funded by APRA-E to create a novel, synthetic analogue of carbonic anhydrase and incorporate it into a membrane for removal of CO2 from flue gas in coal power plants. Mechanism background, preliminary feasibility study results, molecular modeling of analogue-CO2 interaction, and program timeline are provided.

  4. Sonar path correction in synthetic aperture processing

    NARCIS (Netherlands)

    Groen, J.; Hansen, R.E.; Sabel, J.C.

    2003-01-01

    In the next generation of mine hunting sonars, in particular on Autonomous Underwater Vehicles (AUVs), Synthetic Aperture Sonar (SAS) will play an important role. The benefit of SAS is to increase resolution and signal-tonoise ratio by coherent processing of successive pings. A challenge in SAS is

  5. Synthetic Aperture Beamformation using the GPU

    DEFF Research Database (Denmark)

    Hansen, Jens Munk; Schaa, Dana; Jensen, Jørgen Arendt

    2011-01-01

    A synthetic aperture ultrasound beamformer is implemented for a GPU using the OpenCL framework. The implementation supports beamformation of either RF signals or complex baseband signals. Transmit and receive apodization can be either parametric or dynamic using a fixed F-number, a reference, and...... workstation with 2 quad-core Xeon-processors....

  6. Synthetic Biology-The Synthesis of Biology.

    Science.gov (United States)

    Ausländer, Simon; Ausländer, David; Fussenegger, Martin

    2017-06-01

    Synthetic biology concerns the engineering of man-made living biomachines from standardized components that can perform predefined functions in a (self-)controlled manner. Different research strategies and interdisciplinary efforts are pursued to implement engineering principles to biology. The "top-down" strategy exploits nature's incredible diversity of existing, natural parts to construct synthetic compositions of genetic, metabolic, or signaling networks with predictable and controllable properties. This mainly application-driven approach results in living factories that produce drugs, biofuels, biomaterials, and fine chemicals, and results in living pills that are based on engineered cells with the capacity to autonomously detect and treat disease states in vivo. In contrast, the "bottom-up" strategy seeks to be independent of existing living systems by designing biological systems from scratch and synthesizing artificial biological entities not found in nature. This more knowledge-driven approach investigates the reconstruction of minimal biological systems that are capable of performing basic biological phenomena, such as self-organization, self-replication, and self-sustainability. Moreover, the syntheses of artificial biological units, such as synthetic nucleotides or amino acids, and their implementation into polymers inside living cells currently set the boundaries between natural and artificial biological systems. In particular, the in vitro design, synthesis, and transfer of complete genomes into host cells point to the future of synthetic biology: the creation of designer cells with tailored desirable properties for biomedicine and biotechnology. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  7. The ten grand challenges of synthetic life

    NARCIS (Netherlands)

    Porcar, M.; Danchin, A.; Lorenzo, de V.; Martins Dos Santos, V.A.P.; Krasnogor, V.; Rasmussen, S.; Moya, A.

    2011-01-01

    The construction of artificial life is one of the main scientific challenges of the Synthetic Biology era. Advances in DNA synthesis and a better understanding of regulatory processes make the goal of constructing the first artificial cell a realistic possibility. This would be both a fundamental sc

  8. Synthetic biology advances for pharmaceutical production

    Science.gov (United States)

    Breitling, Rainer; Takano, Eriko

    2015-01-01

    Synthetic biology enables a new generation of microbial engineering for the biotechnological production of pharmaceuticals and other high-value chemicals. This review presents an overview of recent advances in the field, describing new computational and experimental tools for the discovery, optimization and production of bioactive molecules, and outlining progress towards the application of these tools to pharmaceutical production systems. PMID:25744872

  9. Synthetic Raw Materials for Refractories in China

    Institute of Scientific and Technical Information of China (English)

    SHIGan; YUEWeidong

    2001-01-01

    The development and status of synthetic raw materials for refractories in China are reviewed,including magne-site-based materials,alumina ,ullite,calcium alumi-nate cement ,ultrafine powder,spinel,silicon carbide and cordierite.The research work on calcium zirconate and sialon materials are also introduced.

  10. [Pharmacodynamics of synthetic estrogens. Review article].

    Science.gov (United States)

    Sojo-Aranda, I; Cortés-Gallegos, V

    1990-10-01

    Some details about the function of natural and synthetical hormonas are reviewed, particularly estrogens as ethynyl estradiol and its 3, Methyl ether (mestranol); its peripheral concentration vs tissular hormonal contents, a relationship of biological importance as the first step in its hormonal action and the cummulative local effects that could explain some intra and extracellular phenomena.

  11. [Pharmacodynamics of synthetic estrogens. A review].

    Science.gov (United States)

    Sojo-Aranda, I; Cortés-Gallegos, V

    1990-10-01

    Some details about the function of natural and synthetical hormonas are reviewed, particularly estrogens as ethynyl estradiol and its 3, Methyl ether (mestranol); its peripheral concentration vs tissular hormonal contents, a relationship of biological importance as the first step in its hormonal action and the cumulative local effects that could explain some intra and extracellular phenomena.

  12. Bone formation on synthetic precursors of hydroxyapatite.

    Science.gov (United States)

    Suzuki, O; Nakamura, M; Miyasaka, Y; Kagayama, M; Sakurai, M

    1991-05-01

    The aim of this study was to investigate the reaction of skeletal tissue to various synthetic calcium phosphate (Ca-P) compounds in vivo. Five synthetic Ca-P compounds were implanted into the subperiosteal area of the calvaria of 7-week-old BALB/c mice for one to 15 weeks. Synthetic compounds were dicalcium phosphate (DCP), octacalcium phosphate (OCP), amorphous calcium phosphate (ACP), Ca-deficient hydroxyapatite and hydroxyapatile (HA). Implanted DCP, OCP and ACP were found to be converted to apatitic phase by x-ray microdiffraction analysis using undecalcified specimens. Structure of bone was found out on all of Ca-P compounds eventually at late stage under the light microscope, but the rate of bone formation calculated from a number of experiments varied on respective synthetic Ca-P compound. It was high as 80% for DCP, OCP and ACP, but was low as 5.6% for Ca-deficient HA, and no reaction was found for HA at the stage of 3 weeks. Fine filaments and granular materials in the newly formed bone matrix were detected at 7 days around the remnants of OCP particles which already converted to apatitic phase by ultrastructural study of decalcified specimens. These structures were very similar to the components of bone nodules seen in intramembranous osteogenesis. It is postulated that the precursors of HA have an important role in intramembranous osteogenesis.

  13. Synthetic Aperture Ladar Imaging and Atmospheric Turbulence

    Science.gov (United States)

    2016-06-09

    to pursue a claim for personal or organizational intellectual property ? Changes in research objectives (if any): None Change in AFOSR Program Manager...T. J. Wright, “Synthetic-aperture imaging laser radar: laboratory demonstration and signal processing,” Appl . Opt., vol. 44, no. 35, pp. 7621–7629

  14. News: Synthetic biology leading to specialty chemicals

    Science.gov (United States)

    Synthetic biology can combine the disciplines of biology, engineering, and chemistry productively to form molecules of great scientific and commercial value. Recent advances in the new field are explored for their connection to new tools that have been used to elucidate productio...

  15. [The forensic chemical study of synthetic detergents].

    Science.gov (United States)

    Fartushnyĭ, A F; Sergeeva, E E; Kvasov, E B

    1994-01-01

    Six color reactions were developed and thin-layer chromatography conditions defined for identification of components of some synthetic detergents in preparations and cadaveric material. Sensitivity of toxic components identification in biologic objects is 0.1 mg for alkylbenzolsulfonate and 0.25 mg of sodium silicate per 100 g of the object.

  16. The ten grand challenges of synthetic life

    NARCIS (Netherlands)

    Porcar, M.; Danchin, A.; Lorenzo, de V.; Martins Dos Santos, V.A.P.; Krasnogor, V.; Rasmussen, S.; Moya, A.

    2011-01-01

    The construction of artificial life is one of the main scientific challenges of the Synthetic Biology era. Advances in DNA synthesis and a better understanding of regulatory processes make the goal of constructing the first artificial cell a realistic possibility. This would be both a fundamental sc

  17. Synthetic Homology in Homotopy Type Theory

    OpenAIRE

    Graham, Robert

    2017-01-01

    This paper defines homology in homotopy type theory, in the process stable homotopy groups are also defined. Previous research in synthetic homotopy theory is relied on, in particular the definition of cohomology. This work lays the foundation for a computer checked construction of homology.

  18. AN UNSUPERVISED CLASSIFICATION FOR FULLY POLARIMETRIC SAR DATA USING SPAN/H/α IHSL TRANSFORM AND THE FCM ALGORITHM

    Institute of Scientific and Technical Information of China (English)

    Wu Yirong; Cao Fang; Hong Wen

    2007-01-01

    In this paper, the IHSL transform and the Fuzzy C-Means (FCM) segmentation algorithm are combined together to perform the unsupervised classification for fully polarimetric Synthetic Aperture Rader (SAR) data. We apply the IHSL colour transform to H/α/SPAN space to obtain a new space (RGB colour space) which has a uniform distinguishability among inner parameters and contains the whole polarimetric information in H/α/SPAN. Then the FCM algorithm is applied to this RGB space to finish the classification procedure. The main advantages of this method are that the parameters in the color space have similar interclass distinguishability, thus it can achieve a high performance in the pixel based segmentation algorithm, and since we can treat the parameters in the same way, the segmentation procedure can be simplified. The experiments show that it can provide an improved classification result compared with the method which uses the H/α/SPAN space directly during the segmentation procedure.

  19. Versatile strategy to access fully functionalized benzodifurans: redox-active chromophores for the construction of extended pi-conjugated materials.

    Science.gov (United States)

    Yi, Chenyi; Blum, Carmen; Lehmann, Mario; Keller, Stephan; Liu, Shi-Xia; Frei, Gabriela; Neels, Antonia; Hauser, Jürg; Schürch, Stefan; Decurtins, Silvio

    2010-05-21

    An efficient synthetic approach to construct a fully substituted benzo[1,2-b:4,5-b']difuran (BDF) 2a via base-catalyzed double annulations is presented. Compound 2a can readily undergo Suzuki, Heck, and Sonogashira coupling reactions to afford in good yields a manifold of extended pi-conjugated BDF derivatives, e.g., with pyridine termini (4-6) and with different spacers. These are highly luminescent materials that undergo two reversible one-electron oxidations. Remarkably, their photophysical and electrochemical properties can be largely tuned by methylation or protonation. Consequently, they can function as pH-dependent fluorescence switches. Finally, the observed electronic properties are explained on the basis of density functional theory.

  20. ACL Revision in Synthetic ACL graft failure

    Science.gov (United States)

    Etcheto, H. Rivarola; Zordán, J.; Escobar, G.; Collazo, C.; Palanconi, M.; Autorino, C.; Salinas, E. Alvarez

    2017-01-01

    The development of synthetic grafts as an alternative to biological grafts for reconstruction of the anterior cruciate ligament dates from 1980. The interest is awakened due to the potential advantages of: The absence of morbidity associated with donor site, and early return to sport. However, this surgical technique has had multiple complications associated with graft: mechanical failures (synthetic graft failure, loss of fixation), synovial foreign body reaction, recurrent stroke, recurrent instability and ultimately, early osteoarthritis. Objectives: We describe the synthetic graft failure LCA, intraoperative findings and details of surgical technique. Methods: Patient 35 years old, with a history of ACL reconstruction four years of evolution in another health center, consultation with the Service knee arthroscopy for acute knee pain left knee during secondary sporting event to a rotation mechanism with fixed foot. On physical examination, presents and positive Lachman maneuver Pivot. Radiografia in a widening of the tibial tunnel is observed. NMR shows a discontinuity of fibers of synthetic graft. Results: First time arthroscopic revision where synthetic plastic LCA identifies with Disruption fiber pattern. Intraoperatively, hypertrophic chronic synovitis localized predominantly in intercóndilo is observed. debridement thereof is performed, and proceeds to the extraction of the synthetic ligament. Then he was made prior cruentado and revival of the edges of the tunnel, filling them with non-irradiated structural bone allograft. At four months as planned and after confirmation by studies incorporating bone graft was performed the second time with the new plastic ACL. It was planned like a primary graft surgery with autologous hamstring prepared in fourfold form, and fixation with modified transtibial technique Biotransfix system proximal and distal screw Biocomposite (arthrex®). A quadruple graft 9 mm was obtained, making good positioning of tunnels and stable

  1. A fully automated high-throughput training system for rodents.

    Directory of Open Access Journals (Sweden)

    Rajesh Poddar

    Full Text Available Addressing the neural mechanisms underlying complex learned behaviors requires training animals in well-controlled tasks, an often time-consuming and labor-intensive process that can severely limit the feasibility of such studies. To overcome this constraint, we developed a fully computer-controlled general purpose system for high-throughput training of rodents. By standardizing and automating the implementation of predefined training protocols within the animal's home-cage our system dramatically reduces the efforts involved in animal training while also removing human errors and biases from the process. We deployed this system to train rats in a variety of sensorimotor tasks, achieving learning rates comparable to existing, but more laborious, methods. By incrementally and systematically increasing the difficulty of the task over weeks of training, rats were able to master motor tasks that, in complexity and structure, resemble ones used in primate studies of motor sequence learning. By enabling fully automated training of rodents in a home-cage setting this low-cost and modular system increases the utility of rodents for studying the neural underpinnings of a variety of complex behaviors.

  2. FASTER: an unsupervised fully automated sleep staging method for mice.

    Science.gov (United States)

    Sunagawa, Genshiro A; Séi, Hiroyoshi; Shimba, Shigeki; Urade, Yoshihiro; Ueda, Hiroki R

    2013-06-01

    Identifying the stages of sleep, or sleep staging, is an unavoidable step in sleep research and typically requires visual inspection of electroencephalography (EEG) and electromyography (EMG) data. Currently, scoring is slow, biased and prone to error by humans and thus is the most important bottleneck for large-scale sleep research in animals. We have developed an unsupervised, fully automated sleep staging method for mice that allows less subjective and high-throughput evaluation of sleep. Fully Automated Sleep sTaging method via EEG/EMG Recordings (FASTER) is based on nonparametric density estimation clustering of comprehensive EEG/EMG power spectra. FASTER can accurately identify sleep patterns in mice that have been perturbed by drugs or by genetic modification of a clock gene. The overall accuracy is over 90% in every group. 24-h data are staged by a laptop computer in 10 min, which is faster than an experienced human rater. Dramatically improving the sleep staging process in both quality and throughput FASTER will open the door to quantitative and comprehensive animal sleep research. © 2013 The Authors Genes to Cells © 2013 by the Molecular Biology Society of Japan and Wiley Publishing Asia Pty Ltd.

  3. Fully Automated Lipid Pool Detection Using Near Infrared Spectroscopy

    Directory of Open Access Journals (Sweden)

    Elżbieta Pociask

    2016-01-01

    Full Text Available Background. Detecting and identifying vulnerable plaque, which is prone to rupture, is still a challenge for cardiologist. Such lipid core-containing plaque is still not identifiable by everyday angiography, thus triggering the need to develop a new tool where NIRS-IVUS can visualize plaque characterization in terms of its chemical and morphologic characteristic. The new tool can lead to the development of new methods of interpreting the newly obtained data. In this study, the algorithm to fully automated lipid pool detection on NIRS images is proposed. Method. Designed algorithm is divided into four stages: preprocessing (image enhancement, segmentation of artifacts, detection of lipid areas, and calculation of Lipid Core Burden Index. Results. A total of 31 NIRS chemograms were analyzed by two methods. The metrics, total LCBI, maximal LCBI in 4 mm blocks, and maximal LCBI in 2 mm blocks, were calculated to compare presented algorithm with commercial available system. Both intraclass correlation (ICC and Bland-Altman plots showed good agreement and correlation between used methods. Conclusions. Proposed algorithm is fully automated lipid pool detection on near infrared spectroscopy images. It is a tool developed for offline data analysis, which could be easily augmented for newer functions and projects.

  4. Fully printed flexible and disposable wireless cyclic voltammetry tag.

    Science.gov (United States)

    Jung, Younsu; Park, Hyejin; Park, Jin-Ah; Noh, Jinsoo; Choi, Yunchang; Jung, Minhoon; Jung, Kyunghwan; Pyo, Myungho; Chen, Kevin; Javey, Ali; Cho, Gyoujin

    2015-01-29

    A disposable cyclic voltammetry (CV) tag is printed on a plastic film by integrating wireless power transmitter, polarized triangle wave generator, electrochemical cell and signage through a scalable gravure printing method. By proximity of 13.56 MHz RF reader, the printed CV tag generates 320 mHz of triangular sweep wave from +500 mV to -500 mV which enable to scan a printed electrochemical cell in the CV tag. By simply dropping any specimen solution on the electrochemical cell in the CV tag, the presence of solutes in the solution can be detected and shown on the signage of the CV tag in five sec. 10 mM of N,N,N',N'-tetramethyl-p-phenylenediamine (TMPD) was used as a standard solute to prove the working concept of fully printed disposable wireless CV tag. Within five seconds, we can wirelessly diagnose the presence of TMPD in the solution using the CV tag in the proximity of the 13.56 MHz RF reader. This fully printed and wirelessly operated flexible CV tag is the first of its kind and marks the path for the utilization of inexpensive and disposable wireless electrochemical sensor systems for initial diagnose hazardous chemicals and biological molecules to improve public hygiene and health.

  5. Scaffolding Fully Online First Year Computer Literacy Students for Success

    Directory of Open Access Journals (Sweden)

    Niall Dixon

    2013-05-01

    Full Text Available This paper reports on the findings of a study of first year students studying a fully online computer literacy module on a Real Estate Agency and Property Economics degree programme at Dublin Institute of Technology, Ireland. In addition to the cohort of entrants to higher education without prior computer literacy skills, there will also be a cohort who are unfamiliar with learning in an online mode. Those students well versed with internet and social media network skills do not necessarily have good office/desktop software skills. "Digital natives" they may be but are they really computer literate? Fully online learning systems in themselves do not foster the type of supportive environments that would encourage students to succeed. In this study a scaffolding approach was adopted with the inclusion of a number of learning supports (ranging from regular e-mails through to face-to-face tutorials to provide a more likely opportunity to succeed. The results indicate that those students who navigated the unfamiliar online terrain and availed of the supports succeeded in this module.

  6. Limiting amplitudes of fully nonlinear interfacial tides and solitons

    Science.gov (United States)

    Aguiar-González, Borja; Gerkema, Theo

    2016-08-01

    A new two-fluid layer model consisting of forced rotation-modified Boussinesq equations is derived for studying tidally generated fully nonlinear, weakly nonhydrostatic dispersive interfacial waves. This set is a generalization of the Choi-Camassa equations, extended here with forcing terms and Coriolis effects. The forcing is represented by a horizontally oscillating sill, mimicking a barotropic tidal flow over topography. Solitons are generated by a disintegration of the interfacial tide. Because of strong nonlinearity, solitons may attain a limiting table-shaped form, in accordance with soliton theory. In addition, we use a quasi-linear version of the model (i.e. including barotropic advection but linear in the baroclinic fields) to investigate the role of the initial stages of the internal tide prior to its nonlinear disintegration. Numerical solutions reveal that the internal tide then reaches a limiting amplitude under increasing barotropic forcing. In the fully nonlinear regime, numerical experiments suggest that this limiting amplitude in the underlying internal tide extends to the nonlinear case in that internal solitons formed by a disintegration of the internal tide may not reach their table-shaped form with increased forcing, but appear limited well below that state.

  7. High-resolution fully vectorial scanning Kerr magnetometer.

    Science.gov (United States)

    Flajšman, Lukáš; Urbánek, Michal; Křižáková, Viola; Vaňatka, Marek; Turčan, Igor; Šikola, Tomáš

    2016-05-01

    We report on the development of a high-resolution scanning magnetometer, which fully exploits the vectorial nature of the magneto-optical Kerr effect. The three-dimensional nature of magnetization is at the basis of many micromagnetic phenomena and from these data, we can fully characterize magnetization processes of nanostructures in static and dynamic regimes. Our scanning Kerr magnetometer uses a high numerical aperture microscope objective where the incident light beam can be deterministically deviated from the objective symmetry axis, therefore, both in-plane (via the longitudinal Kerr effect) and out-of-plane (via the polar Kerr effect) components of the magnetization vector may be detected. These components are then separated by exploiting the symmetries of the polar and longitudinal Kerr effects. From four consecutive measurements, we are able to directly obtain the three orthogonal components of the magnetization vector with a resolution of 600 nm. Performance of the apparatus is demonstrated by a measurement of 3D magnetization vector maps showing out-of-plane domains and in-plane domain walls in an yttrium-iron-garnet film and on a study of magnetization reversal in a 4-μm-wide magnetic disk.

  8. Development of Low Energy Gap and Fully Regioregular Polythienylenevinylene Derivative

    Directory of Open Access Journals (Sweden)

    Tanya M. S. David

    2014-01-01

    Full Text Available Low energy gap and fully regioregular conjugated polymers find its wide use in solar energy conversion applications. This paper will first briefly review this type of polymers and also report synthesis and characterization of a specific example new polymer, a low energy gap, fully regioregular, terminal functionalized, and processable conjugated polymer poly-(3-dodecyloxy-2,5-thienylene vinylene or PDDTV. The polymer exhibited an optical energy gap of 1.46 eV based on the UV-vis-NIR absorption spectrum. The electrochemically measured highest occupied molecular orbital (HOMO level is −4.79 eV, resulting in the lowest unoccupied molecular orbital (LUMO level of −3.33 eV based on optical energy gap. The polymer was synthesized via Horner-Emmons condensation and is fairly soluble in common organic solvents such as tetrahydrofuran and chloroform with gentle heating. DSC showed two endothermic peaks at 67°C and 227°C that can be attributed to transitions between crystalline and liquid states. The polymer is thermally stable up to about 300°C. This polymer appears very promising for cost-effective solar cell applications.

  9. Modelling the dynamo in fully convective M-stars

    Science.gov (United States)

    Yadav, Rakesh Kumar; Christensen, Ulrich; Morin, Julien; Wolk, Scott; Poppenhaeger, Katja; Reiners, Ansgar; gastine, Thomas

    2017-05-01

    M-stars are among the most active and numerous stars in our galaxy. Their activity plays a fundamentally important role in shaping the exoplanetary biosphere since the habitable zones are very close to these stars. Therefore, modeling M-star activity has become a focal point in habitability studies. The fully convective members of the M-star population demand more immediate attention due to the discovery of Earth-like exoplanets around our stellar neighbors Proxima Centauri and TRAPPIST-1 which are both fully convective. The activity of these stars is driven by their convective dynamo, which may be fundamentally different from the solar dynamo due the absence of radiative cores. We model this dynamo mechanism using high-resolution 3D anelastic MHD simulations. To understand the evolution of the dynamo mechanism we simulate two cases, one with a fast enough rotation period to model a star in the `saturated' regime of the rotation-activity realtionship and the other with a slower period to represent cases in the `unsaturated' regime. We find the rotation period fundamentally controls the behavior of the dynamo solution: faster rotation promotes strong magnetic fields (of order kG) on both small and large length scales and the dipolar component of the magnetic field is dominant and stable, however, slower rotation leads to weaker magnetic fields which exhibit cyclic behavior. In this talk, I will present the simulation results and discuss how we can use them to interpret several observed features of the M-star activity.

  10. Development of fully Bayesian multiple-time-window source inversion

    Science.gov (United States)

    Kubo, Hisahiko; Asano, Kimiyuki; Iwata, Tomotaka; Aoi, Shin

    2016-03-01

    In the estimation of spatiotemporal slip models, kinematic source inversions using Akaike's Bayesian Information Criterion (ABIC) and the multiple-time-window method have often been used. However, there are cases in which conventional ABIC-based source inversions do not work well in the determination of hyperparameters when a non-negative slip constraint is used. In order to overcome this problem, a new source inversion method was developed in this study. The new method introduces a fully Bayesian method into the kinematic multiple-time-window source inversion. The multiple-time-window method is one common way of parametrizing a source time function and is highly flexible in terms of the shape of the source time function. The probability distributions of model parameters and hyperparameters can be directly obtained by using the Markov chain Monte Carlo method. These probability distributions are useful for simply evaluating the uniqueness and reliability of the derived model, which is another advantage of a fully Bayesian method. This newly developed source inversion method was applied to the 2011 Ibaraki-oki, Japan, earthquake (Mw 7.9) to demonstrate its usefulness. It was demonstrated that the problem with using the conventional ABIC-based source inversion method for hyperparameter determination appeared in the spatiotemporal source inversion of this event and that the newly developed source inversion could overcome this problem.

  11. Fully Automated Deep Learning System for Bone Age Assessment.

    Science.gov (United States)

    Lee, Hyunkwang; Tajmir, Shahein; Lee, Jenny; Zissen, Maurice; Yeshiwas, Bethel Ayele; Alkasab, Tarik K; Choy, Garry; Do, Synho

    2017-08-01

    Skeletal maturity progresses through discrete phases, a fact that is used routinely in pediatrics where bone age assessments (BAAs) are compared to chronological age in the evaluation of endocrine and metabolic disorders. While central to many disease evaluations, little has changed to improve the tedious process since its introduction in 1950. In this study, we propose a fully automated deep learning pipeline to segment a region of interest, standardize and preprocess input radiographs, and perform BAA. Our models use an ImageNet pretrained, fine-tuned convolutional neural network (CNN) to achieve 57.32 and 61.40% accuracies for the female and male cohorts on our held-out test images. Female test radiographs were assigned a BAA within 1 year 90.39% and within 2 years 98.11% of the time. Male test radiographs were assigned 94.18% within 1 year and 99.00% within 2 years. Using the input occlusion method, attention maps were created which reveal what features the trained model uses to perform BAA. These correspond to what human experts look at when manually performing BAA. Finally, the fully automated BAA system was deployed in the clinical environment as a decision supporting system for more accurate and efficient BAAs at much faster interpretation time (<2 s) than the conventional method.

  12. Fully vs. Sequentially Coupled Loads Analysis of Offshore Wind Turbines

    Energy Technology Data Exchange (ETDEWEB)

    Damiani, Rick; Wendt, Fabian; Musial, Walter; Finucane, Z.; Hulliger, L.; Chilka, S.; Dolan, D.; Cushing, J.; O' Connell, D.; Falk, S.

    2017-06-19

    The design and analysis methods for offshore wind turbines must consider the aerodynamic and hydrodynamic loads and response of the entire system (turbine, tower, substructure, and foundation) coupled to the turbine control system dynamics. Whereas a fully coupled (turbine and support structure) modeling approach is more rigorous, intellectual property concerns can preclude this approach. In fact, turbine control system algorithms and turbine properties are strictly guarded and often not shared. In many cases, a partially coupled analysis using separate tools and an exchange of reduced sets of data via sequential coupling may be necessary. In the sequentially coupled approach, the turbine and substructure designers will independently determine and exchange an abridged model of their respective subsystems to be used in their partners' dynamic simulations. Although the ability to achieve design optimization is sacrificed to some degree with a sequentially coupled analysis method, the central question here is whether this approach can deliver the required safety and how the differences in the results from the fully coupled method could affect the design. This work summarizes the scope and preliminary results of a study conducted for the Bureau of Safety and Environmental Enforcement aimed at quantifying differences between these approaches through aero-hydro-servo-elastic simulations of two offshore wind turbines on a monopile and jacket substructure.

  13. Shock Particle Interaction - Fully Resolved Simulations and Modeling

    Science.gov (United States)

    Mehta, Yash; Neal, Chris; Jackson, Thomas L.; Balachandar, S. "Bala"; Thakur, Siddharth

    2016-11-01

    Currently there is a substantial lack of fully resolved data for shock interacting with multiple particles. In this talk we will fill this gap by presenting results of shock interaction with 1-D array and 3-D structured arrays of particles. Objectives of performing fully resolved simulations of shock propagation through packs of multiple particles are twofold, 1) To understand the complicated physical phenomena occurring during shock particle interaction, and 2) To translate the knowledge from microscale simulations in building next generation point-particle models for macroscale simulations that can better predict the motion (forces) and heat transfer for particles. We compare results from multiple particle simulations against the single particle simulations and make relevant observations. The drag history and flow field for multiple particle simulations are markedly different from those of single particle simluations, highlighting the effect of neighboring particles. We propose new models which capture this effect of neighboring particles. These models are called Pair-wise Interaction Extended Point Particle models (PIEP). Effect of multiple neighboring particles is broken down into pair-wise interactions, and these pair-wise interactions are superimposed to get the final model U.S. Department of Energy, National Nuclear Security Administration, Advanced Simulation and Computing Program, as a Cooperative Agreement under the Predictive Science Academic Alliance Program, under Contract No. DE-NA0002378.

  14. Synthetic biology for pharmaceutical drug discovery

    Directory of Open Access Journals (Sweden)

    Trosset JY

    2015-12-01

    Full Text Available Jean-Yves Trosset,1 Pablo Carbonell2,3 1Bioinformation Research Laboratory, Sup’Biotech, Villejuif, France; 2Faculty of Life Sciences, SYNBIOCHEM Centre, Manchester Institute of Biotechnology, University of Manchester, Manchester, UK; 3Department of Experimental and Health Sciences (DCEXS, Research Programme on Biomedical Informatics (GRIB, Hospital del Mar Medical Research Institute (IMIM, Universitat Pompeu Fabra (UPF, Barcelona, Spain Abstract: Synthetic biology (SB is an emerging discipline, which is slowly reorienting the field of drug discovery. For thousands of years, living organisms such as plants were the major source of human medicines. The difficulty in resynthesizing natural products, however, often turned pharmaceutical industries away from this rich source for human medicine. More recently, progress on transformation through genetic manipulation of biosynthetic units in microorganisms has opened the possibility of in-depth exploration of the large chemical space of natural products derivatives. Success of SB in drug synthesis culminated with the bioproduction of artemisinin by microorganisms, a tour de force in protein and metabolic engineering. Today, synthetic cells are not only used as biofactories but also used as cell-based screening platforms for both target-based and phenotypic-based approaches. Engineered genetic circuits in synthetic cells are also used to decipher disease mechanisms or drug mechanism of actions and to study cell–cell communication within bacteria consortia. This review presents latest developments of SB in the field of drug discovery, including some challenging issues such as drug resistance and drug toxicity. Keywords: metabolic engineering, plant synthetic biology, natural products, synthetic quorum sensing, drug resistance

  15. Synthetic biology and biosecurity: challenging the "myths".

    Science.gov (United States)

    Jefferson, Catherine; Lentzos, Filippa; Marris, Claire

    2014-01-01

    Synthetic biology, a field that aims to "make biology easier to engineer," is routinely described as leading to an increase in the "dual-use" threat, i.e., the potential for the same scientific research to be "used" for peaceful purposes or "misused" for warfare or terrorism. Fears have been expressed that the "de-skilling" of biology, combined with online access to the genomic DNA sequences of pathogenic organisms and the reduction in price for DNA synthesis, will make biology increasingly accessible to people operating outside well-equipped professional research laboratories, including people with malevolent intentions. The emergence of do-it-yourself (DIY) biology communities and of the student iGEM competition has come to epitomize this supposed trend toward greater ease of access and the associated potential threat from rogue actors. In this article, we identify five "myths" that permeate discussions about synthetic biology and biosecurity, and argue that they embody misleading assumptions about both synthetic biology and bioterrorism. We demonstrate how these myths are challenged by more realistic understandings of the scientific research currently being conducted in both professional and DIY laboratories, and by an analysis of historical cases of bioterrorism. We show that the importance of tacit knowledge is commonly overlooked in the dominant narrative: the focus is on access to biological materials and digital information, rather than on human practices and institutional dimensions. As a result, public discourse on synthetic biology and biosecurity tends to portray speculative scenarios about the future as realities in the present or the near future, when this is not warranted. We suggest that these "myths" play an important role in defining synthetic biology as a "promissory" field of research and as an "emerging technology" in need of governance.

  16. Supernova Driving. III. Synthetic Molecular Cloud Observations

    Science.gov (United States)

    Padoan, Paolo; Juvela, Mika; Pan, Liubin; Haugbølle, Troels; Nordlund, Åke

    2016-08-01

    We present a comparison of molecular clouds (MCs) from a simulation of supernova (SN) driven interstellar medium (ISM) turbulence with real MCs from the Outer Galaxy Survey. The radiative transfer calculations to compute synthetic CO spectra are carried out assuming that the CO relative abundance depends only on gas density, according to four different models. Synthetic MCs are selected above a threshold brightness temperature value, T B,min = 1.4 K, of the J = 1 - 0 12CO line, generating 16 synthetic catalogs (four different spatial resolutions and four CO abundance models), each containing up to several thousands MCs. The comparison with the observations focuses on the mass and size distributions and on the velocity-size and mass-size Larson relations. The mass and size distributions are found to be consistent with the observations, with no significant variations with spatial resolution or chemical model, except in the case of the unrealistic model with constant CO abundance. The velocity-size relation is slightly too steep for some of the models, while the mass-size relation is a bit too shallow for all models only at a spatial resolution dx ≈ 1 pc. The normalizations of the Larson relations show a clear dependence on spatial resolution, for both the synthetic and the real MCs. The comparison of the velocity-size normalization suggests that the SN rate in the Perseus arm is approximately 70% or less of the rate adopted in the simulation. Overall, the realistic properties of the synthetic clouds confirm that SN-driven turbulence can explain the origin and dynamics of MCs.

  17. Quantitative statistical assessment of conditional models for synthetic aperture radar.

    Science.gov (United States)

    DeVore, Michael D; O'Sullivan, Joseph A

    2004-02-01

    Many applications of object recognition in the presence of pose uncertainty rely on statistical models-conditioned on pose-for observations. The image statistics of three-dimensional (3-D) objects are often assumed to belong to a family of distributions with unknown model parameters that vary with one or more continuous-valued pose parameters. Many methods for statistical model assessment, for example the tests of Kolmogorov-Smirnov and K. Pearson, require that all model parameters be fully specified or that sample sizes be large. Assessing pose-dependent models from a finite number of observations over a variety of poses can violate these requirements. However, a large number of small samples, corresponding to unique combinations of object, pose, and pixel location, are often available. We develop methods for model testing which assume a large number of small samples and apply them to the comparison of three models for synthetic aperture radar images of 3-D objects with varying pose. Each model is directly related to the Gaussian distribution and is assessed both in terms of goodness-of-fit and underlying model assumptions, such as independence, known mean, and homoscedasticity. Test results are presented in terms of the functional relationship between a given significance level and the percentage of samples that wold fail a test at that level.

  18. From noise to synthetic nucleoli: can synthetic biology achieve new insights?

    Science.gov (United States)

    Ciechonska, Marta; Grob, Alice; Isalan, Mark

    2016-04-18

    Synthetic biology aims to re-organise and control biological components to make functional devices. Along the way, the iterative process of designing and testing gene circuits has the potential to yield many insights into the functioning of the underlying chassis of cells. Thus, synthetic biology is converging with disciplines such as systems biology and even classical cell biology, to give a new level of predictability to gene expression, cell metabolism and cellular signalling networks. This review gives an overview of the contributions that synthetic biology has made in understanding gene expression, in terms of cell heterogeneity (noise), the coupling of growth and energy usage to expression, and spatiotemporal considerations. We mainly compare progress in bacterial and mammalian systems, which have some of the most-developed engineering frameworks. Overall, one view of synthetic biology can be neatly summarised as "creating in order to understand."

  19. Semi-synthetic artemisinin: a model for the use of synthetic biology in pharmaceutical development.

    Science.gov (United States)

    Paddon, Chris J; Keasling, Jay D

    2014-05-01

    Recent developments in synthetic biology, combined with continued progress in systems biology and metabolic engineering, have enabled the engineering of microorganisms to produce heterologous molecules in a manner that was previously unfeasible. The successful synthesis and recent entry of semi-synthetic artemisinin into commercial production is the first demonstration of the potential of synthetic biology for the development and production of pharmaceutical agents. In this Review, we describe the metabolic engineering and synthetic biology approaches that were used to develop this important antimalarial drug precursor. This not only demonstrates the incredible potential of the available technologies but also illuminates how lessons learned from this work could be applied to the production of other pharmaceutical agents.

  20. Coupled nonlinear aeroelasticity and flight dynamics of fully flexible aircraft

    Science.gov (United States)

    Su, Weihua

    This dissertation introduces an approach to effectively model and analyze the coupled nonlinear aeroelasticity and flight dynamics of highly flexible aircraft. A reduced-order, nonlinear, strain-based finite element framework is used, which is capable of assessing the fundamental impact of structural nonlinear effects in preliminary vehicle design and control synthesis. The cross-sectional stiffness and inertia properties of the wings are calculated along the wing span, and then incorporated into the one-dimensional nonlinear beam formulation. Finite-state unsteady subsonic aerodynamics is used to compute airloads along lifting surfaces. Flight dynamic equations are then introduced to complete the aeroelastic/flight dynamic system equations of motion. Instead of merely considering the flexibility of the wings, the current work allows all members of the vehicle to be flexible. Due to their characteristics of being slender structures, the wings, tail, and fuselage of highly flexible aircraft can be modeled as beams undergoing three dimensional displacements and rotations. New kinematic relationships are developed to handle the split beam systems, such that fully flexible vehicles can be effectively modeled within the existing framework. Different aircraft configurations are modeled and studied, including Single-Wing, Joined-Wing, Blended-Wing-Body, and Flying-Wing configurations. The Lagrange Multiplier Method is applied to model the nodal displacement constraints at the joint locations. Based on the proposed models, roll response and stability studies are conducted on fully flexible and rigidized models. The impacts of the flexibility of different vehicle members on flutter with rigid body motion constraints, flutter in free flight condition, and roll maneuver performance are presented. Also, the static stability of the compressive member of the Joined-Wing configuration is studied. A spatially-distributed discrete gust model is incorporated into the time simulation