WorldWideScience

Sample records for fluid bilayer models

  1. Efficient tunable generic model for self-assembling fluid bilayer membranes

    Science.gov (United States)

    Deserno, Markus

    2005-03-01

    We present a new model for the simulation of generic lipid bilayers in the mesoscopic regime (between a few nanometers and many tens of nanometers), which is very robust, versatile, and extremely efficient, since it avoids the need for an embedding solvent. Based entirely on simple pair potentials, it features a wide region of unassisted self assembly into fluid bilayers without the need for careful parameter tuning. The resulting membranes display the correct continuum elastic behavior with bending constants in the experimentally relevant range. It can be readily used to study events like bilayer fusion, bilayer melting, lipid mixtures, rafts, and protein-bilayer interactions.

  2. General model of phospholipid bilayers in fluid phase within the single chain mean field theory

    Energy Technology Data Exchange (ETDEWEB)

    Guo, Yachong; Baulin, Vladimir A. [Departament d’Enginyeria Química, Universitat Rovira i Virgili, Av. dels Paisos Catalans 26, 43007 Tarragona (Spain); Pogodin, Sergey [Institute of Chemical Research of Catalonia, ICIQ, Av. Paisos Catalans 16, 43007 Tarragona (Spain)

    2014-05-07

    Coarse-grained model for saturated phospholipids: 1,2-didecanoyl-sn-glycero-3-phosphocholine (DCPC), 1,2-dilauroyl-sn-glycero-3-phosphocholine (DLPC), 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC), 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), 1,2-distearoyl-sn-glycero-3-phosphocholine (DSPC) and unsaturated phospholipids: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), 1,2- dioleoyl-sn-glycero-3-phosphocholine (DOPC) is introduced within the single chain mean field theory. A single set of parameters adjusted for DMPC bilayers gives an adequate description of equilibrium and mechanical properties of a range of saturated lipid molecules that differ only in length of their hydrophobic tails and unsaturated (POPC, DOPC) phospholipids which have double bonds in the tails. A double bond is modeled with a fixed angle of 120°, while the rest of the parameters are kept the same as saturated lipids. The thickness of the bilayer and its hydrophobic core, the compressibility, and the equilibrium area per lipid correspond to experimentally measured values for each lipid, changing linearly with the length of the tail. The model for unsaturated phospholipids also fetches main thermodynamical properties of the bilayers. This model is used for an accurate estimation of the free energies of the compressed or stretched bilayers in stacks or multilayers and gives reasonable estimates for free energies. The proposed model may further be used for studies of mixtures of lipids, small molecule inclusions, interactions of bilayers with embedded proteins.

  3. PI3 kinase enzymology on fluid lipid bilayers.

    Science.gov (United States)

    Dutta, Debjit; Pulsipher, Abigail; Luo, Wei; Yousaf, Muhammad N

    2014-10-21

    We report the use of fluid lipid bilayer membrane as a model platform to study the influence of the bilayer microenvironment and composition on the enzymology in membrane. As a model system we determined the enzyme kinetics on membranes for the transformation of bilayers containing phosphoinositol(4,5)-bisphosphate (PI(4,5)P2) to phosphoinositol(3,4,5)-trisphosphate (PI(3,4,5)P3) by the enzyme phosphoinositol-3-kinase (PI3K) using radiolabeled ATP. The activity of the enzyme was monitored as a function of the radioactivity incorporated within the bilayer. The transformation of PI(4,5)P2 to PI(3,4,5)P3 was determined using a mass strip assay. The fluidity of the bilayer was confirmed by Fluorescence Recovery After Photobleaching (FRAP) experiments. Kinetic simulations were performed based on Langmuir adsorption and Michaelis-Menton kinetics equations to generate the rate constants for the enzymatic reaction. The effect of cholesterol on the enzyme kinetics was studied by doping the bilayer with 1% cholesterol. This leads to significant reduction in reaction rate due to change in membrane microenvironment. This strategy provides a method to study the enzymology of various kinases and phosphatases occurring at the membrane and also how these reactions are affected by the membrane composition and surface microenvironment.

  4. Fluid lipid bilayers: Intermonolayer coupling and its thermodynamic manifestations

    DEFF Research Database (Denmark)

    Hansen, Per Lyngs; Miao, Ling; Ipsen, John Hjorth

    1998-01-01

    A fluid membrane of lipid bilayer consists of two individual molecular monolayers physically opposed to each other. This unique molecular architecture naturally necessitates the need to treat a lipid-bilayer membrane as one entity of two coupled two-dimensional systems (monolayers), each of which...

  5. Multiscale Modeling of Supported Lipid Bilayers

    Science.gov (United States)

    Hoopes, Matthew I.; Xing, Chenyue; Faller, Roland

    Cell membranes consist of a multitude of lipid molecules that serve as a framework for the even greater variety of membrane associated proteins [1-4]. As this highly complex (nonequilibrium) system cannot easily be understood and studied in a controlled way, a wide variety of model systems have been devised to understand the dynamics, structure, and thermodynamics in biological membranes. One such model system is a supported lipid bilayer (SLB), a two-dimensional membrane suspended on a surface. SLBs have been realized to be manageable experimentally while reproducing many of the key features of real biological membranes [5,6]. One of the main advantages of supported bilayers is the physical stability due to the solid support that enables a wide range of surface characterization techniques not available to free or unsupported membranes. As SLBs maintain some of the crucial structural and dynamic properties of biological membranes, they provide an important bridge to natural systems. In order to mimic cell membranes reliably, certain structural and dynamic features have to be reliably reproduced in the artificially constructed lipid bilayers. SLBs should display lateral mobility as in living cells, because many membrane activities involve transport, recruitment, or assembly of specific components. It is also critical for membranes to exhibit the correct thermodynamic phase, namely, a fluid lipid bilayer, to respond to environmental stress such as temperature and pressure changes [7]. There are several ways to fabricate supported lipid bilayers (SLBs) on planar substrates. One can use vesicle fusion on solid substrates [5,8-10] as well as Langmuir-Blodgett deposition [11,12]. Proteoliposome adsorption and subsequent membrane formation on a mica surface was first demonstrated by Brian and McConnell [13]. Because of its simplicity and reproducibility, this is one of the most common approaches to prepare supported membranes. A diverse range of different solid substrates

  6. Multiscale Modeling of supported bilayers

    Science.gov (United States)

    Faller, Roland; Xing, Chenyue; Hoopes, Matthew I.

    2009-03-01

    Supported Lipid Bilayers are an abundant research platform for understanding the behavior of real cell membranes as they allow for additional mechanical stability. We studied systematically the changes that a support induces on a phospholipid bilayer using coarse-grained molecular modeling on different levels. We characterize the density and pressure profiles as well as the density imbalance inflicted on the membrane by the support. We also determine the diffusion coefficients and characterize the influence of different corrugations of the support. We then determine the free energy of transfer of phospholipids between the proximal and distal leaflet of a supported membrane using the coarse-grained Martini model. It turns out that there is at equilibrium about a 2-3% higher density in the proximal leaflet. These results are in favorable agreement with recent data obtained by very large scale modeling using a water free model where flip-flop can be observed directly. We compare results of the free energy of transfer obtained by pulling the lipid across the membrane in different ways. There are small quantitative differences but the overall picture is consistent. We are additionally characterizing the intermediate states which determine the barrier height and therefore the rate of translocation.

  7. Fluid bilayer structure determination: Joint refinement in composition space using X-ray and neutron diffraction data

    Energy Technology Data Exchange (ETDEWEB)

    White, S.H. [Univ. of California, Irvine, CA (United States); Wiener, M.C. [Univ. of California, San Francisco, CA (United States)

    1994-12-31

    Experimentally-determined structural models of fluid lipid bilayers are essential for verifying molecular dynamics simulations of bilayers and for understanding the structural consequences of peptide interactions. The extreme thermal motion of bilayers precludes the possibility of atomic-level structural models. Defining {open_quote}the structure{close_quote} of a bilayer as the time-averaged transbilayer distribution of the water and the principal lipid structural groups such as the carbonyls and double-bonds (quasimolecular fragments), one can represent the bilayer structure as a sum of Gaussian functions referred to collectively as the quasimolecular structure. One method of determining the structure is by neutron diffraction combined with exhaustive specific deuteration. This method is impractical because of the expense of the chemical syntheses and the limited amount of neutron beam time currently available. We have therefore developed the composition space refinement method for combining X-ray and minimal neutron diffraction data to arrive at remarkably detailed and accurate structures of fluid bilayers. The composition space representation of the bilayer describes the probability of occupancy per unit length across the width of the bilayer of each quasimolecular component and permits the joint refinement of X-ray and neutron lamellar diffraction data by means of a single quasimolecular structure that is fitted simultaneously to both data sets. Scaling of each component by the appropriate neutron or X-ray scattering length maps the composition-space profile to the appropriate scattering length space for comparison to experimental data. The difficulty with the method is that fluid bilayer structures are generally only marginally determined by the experimental data. This means that the space of possible solutions must be extensively explored in conjunction with a thorough analysis of errors.

  8. Acyl chain composition and coexisting fluid phases in lipid bilayers

    Science.gov (United States)

    Gu, Yongwen; Bradley, Miranda; Mitchell, Drake

    2011-10-01

    At room temperature phospholipid bilayers enriched in sphingolipids and cholesterol may form a solid phase as well as two coexisting fluid phases. These are the standard fluid phase, or the liquid-disordered phase, ld, and the liquid-ordered phase, lo, which is commonly associated with lipid rafts. Ternary mixtures of palmitoyl-oleoyl-phosphocholine (POPC; 16:0,18:1 PC), sphingomyelin (SPM), and cholesterol (Chol) form coexisting lo, ld and solid phases over a wide range of molar ratios. We are examining the ability of two fluorescent probes to detect these 2 phases: NBD linked to di-16:0 PE which partitions strongly into the lo phase and NBD linked to di-18:1 PE which partitions strongly into the ld phase. We are also examining the effect of the highly polyunsaturated phospholipid stearoyl-docosahexanoyl-phosphocholine (SDPC; 18:0, 22:6 PC) on the ternary phase diagram of POPC/SPM/Chol with particular focus on the functionally important lo/ld coexistence region. We report on the fluorescence lifetime and anisotropy decay dynamics of these two fluorescent probes.

  9. Molecular dynamics modelling of EGCG clusters on ceramide bilayers

    Energy Technology Data Exchange (ETDEWEB)

    Yeo, Jingjie; Cheng, Yuan; Li, Weifeng; Zhang, Yong-Wei [Institute of High Performance Computing, A*STAR, 138632 (Singapore)

    2015-12-31

    A novel method of atomistic modelling and characterization of both pure ceramide and mixed lipid bilayers is being developed, using only the General Amber ForceField. Lipid bilayers modelled as pure ceramides adopt hexagonal packing after equilibration, and the area per lipid and bilayer thickness are consistent with previously reported theoretical results. Mixed lipid bilayers are modelled as a combination of ceramides, cholesterol, and free fatty acids. This model is shown to be stable after equilibration. Green tea extract, also known as epigallocatechin-3-gallate, is introduced as a spherical cluster on the surface of the mixed lipid bilayer. It is demonstrated that the cluster is able to bind to the bilayers as a cluster without diffusing into the surrounding water.

  10. X-Ray Kinematography of Temperature-Jump Relaxation Probes the Elastic Properties of Fluid Bilayers

    CERN Document Server

    Pabst, G; Amenitsch, H; Bernstorff, S; Laggner, P; Pabst, Georg; Rappolt, Michael; Amenitsch, Heinz; Bernstorff, Sigrid; Laggner, Peter

    2000-01-01

    The response kinetics of liquid crystalline phosphatidylcholine bilayerstacks to rapid, IR-laser induced temperature jumps has been studied bymillisecond time-resolved x-ray diffraction. The system reacts on the fasttemperature change by a discrete bilayer compression normal to its surface anda lateral bilayer expansion. Since water cannot diffuse from the excess phaseinto the interbilayer water region within the 2 ms duration of the laser pulse,the water layer has to follow the bilayer expansion, by an anomalous thinning.Structural analysis of a 20 ms diffraction pattern from the intermediate phaseindicates that the bilayer thickness remains within the limits of isothermalequilibrium values. Both, the intermediate structure and its relaxation intothe original equilibrium L_(alpha)-phase, depend on the visco-elasticproperties of the bilayer/water system. We present an analysis of therelaxation process by an overdamped one-dimensional oscillation model revealingthe concepts of Hooke's law for phospholipid bila...

  11. A generic model for lipid monolayers, bilayers, and membranes

    CERN Document Server

    Schmid, F; Lenz, O; West, B

    2007-01-01

    We describe a simple coarse-grained model which is suited to study lipid layers and their phase transitions. Lipids are modeled by short semiflexible chains of beads with a solvophilic head and a solvophobic tail component. They are forced to self-assemble into bilayers by a computationally cheap `phantom solvent' environment. The model reproduces the most important phases and phase transitions of monolayers and bilayers. Technical issues such as Monte Carlo parallelization schemes are briefly discussed.

  12. Multiscale molecular modeling of tertiary supported lipid bilayers

    Science.gov (United States)

    Ranz, Holden T.; Faller, Roland

    2015-08-01

    Ternary lipid bilayer systems assembled from mixtures of dipalmitoylphosphatidylcholine (DPPC), dioleoylphosphatidylcholine (DOPC), and cholesterol have been studied using coarse-grained molecular dynamics at biologically relevant temperatures (280 K to 310 K), which are between the chain melting temperatures of the pure lipid component. Free lipid bilayers were simulated using the MARTINI model (Stage I) and a variant with water-water interactions reduced to 76% (Stage II). The latter was subsequently used for preparing supported lipid bilayer simulations (Stage III). Clustering of like lipids was observed, but the simulation timescale did not yield larger phaseseparated domains.

  13. Microporous device for local electric recordings on model lipid bilayers

    Science.gov (United States)

    Kaufeld, Theresa; Steinem, Claudia; Schmidt, Christoph F.

    2015-01-01

    A powerful approach for characterizing lipid membranes and embedded proteins is the reconstitution of model lipid bilayers. The extreme fragility of 5 nm thick bilayers is a challenge for device design and requires a trade off of stability against accessibility. We here present a microporous lab-on-chip device that allows us to form stable, solvent-free lipid bilayers from giant unilamellar vesicles (GUVs) in a geometry that provides a unique set of access possibilities. The device is constructed around a micro-fabricated silicon chip with clusters of 1 µm-diameter pores and provides optical access to the lipid bilayers for high-NA epifluorescence imaging. At the same time, solvent exchange is possible on both sides of the lipid bilayer. Complete coverage can be achieved with GUVs, so that voltages can be applied across the lipid bilayer and single-channel currents can be measured using external or integrated silver/silver chloride electrodes. We describe the micro-fabrication by standard cleanroom techniques and the characterization of the device by atomic force microscopy, scanning electron microscopy and impedance spectroscopy. In proof-of-concept experiments we demonstrate that the device is capable of low-noise, single-ion-channel recordings. Electronic Supplementary Information (ESI) available: See DOI: 10.1039/b000000x/

  14. Reparameterization of all-atom dipalmitoylphosphatidylcholine lipid parameters enables simulation of fluid bilayers at zero tension

    DEFF Research Database (Denmark)

    Sonne, Jacob; Jensen, M.Ø.; Hansen, Flemming Yssing;

    2007-01-01

    represented by the CHARMM energy function in this ensemble, we reparameterized the atomic partial charges in the lipid headgroup and upper parts of the acyl chains. The new charges were determined from the electron structure using both the Mulliken method and the restricted electrostatic potential fitting...... method. We tested the derived charges in molecular dynamics simulations of a fully hydrated DPPC bilayer. Only the simulation with the new restricted electrostatic potential charges shows significant improvements compared with simulations using the original CHARMM27 force field resulting in an area per...... fluid phase of DPPC bilayers can now be simulated in all-atom simulations in the NPT ensemble by employing our modified CHARMM27 force field....

  15. Relaxation dynamics of a compressible bilayer vesicle containing highly viscous fluid.

    Science.gov (United States)

    Sachin Krishnan, T V; Okamoto, Ryuichi; Komura, Shigeyuki

    2016-12-01

    We study the relaxation dynamics of a compressible bilayer vesicle with an asymmetry in the viscosity of the inner and outer fluid medium. First we explore the stability of the vesicle free energy which includes a coupling between the membrane curvature and the local density difference between the two monolayers. Two types of instabilities are identified: a small wavelength instability and a larger wavelength instability. Considering the bulk fluid viscosity and the inter-monolayer friction as the dissipation sources, we next employ Onsager's variational principle to derive the coupled equations both for the membrane and the bulk fluid. The three relaxation modes are coupled to each other due to the bilayer and the spherical structure of the vesicle. Most importantly, a higher fluid viscosity inside the vesicle shifts the crossover mode between the bending and the slipping to a larger value. As the vesicle parameters approach the unstable regions, the relaxation dynamics is dramatically slowed down, and the corresponding mode structure changes significantly. In some limiting cases, our general result reduces to the previously obtained relaxation rates.

  16. Relaxation dynamics of a compressible bilayer vesicle containing highly viscous fluid

    Science.gov (United States)

    Sachin Krishnan, T. V.; Okamoto, Ryuichi; Komura, Shigeyuki

    2016-12-01

    We study the relaxation dynamics of a compressible bilayer vesicle with an asymmetry in the viscosity of the inner and outer fluid medium. First we explore the stability of the vesicle free energy which includes a coupling between the membrane curvature and the local density difference between the two monolayers. Two types of instabilities are identified: a small wavelength instability and a larger wavelength instability. Considering the bulk fluid viscosity and the inter-monolayer friction as the dissipation sources, we next employ Onsager's variational principle to derive the coupled equations both for the membrane and the bulk fluid. The three relaxation modes are coupled to each other due to the bilayer and the spherical structure of the vesicle. Most importantly, a higher fluid viscosity inside the vesicle shifts the crossover mode between the bending and the slipping to a larger value. As the vesicle parameters approach the unstable regions, the relaxation dynamics is dramatically slowed down, and the corresponding mode structure changes significantly. In some limiting cases, our general result reduces to the previously obtained relaxation rates.

  17. Modeling constrained sintering of bi-layered tubular structures

    DEFF Research Database (Denmark)

    Tadesse Molla, Tesfaye; Kothanda Ramachandran, Dhavanesan; Ni, De Wei;

    2015-01-01

    . Furthermore, the model is validated using densification results from sintering of bi-layered tubular ceramic oxygen membrane based on porous MgO and Ce0.9Gd0.1O1.95-d layers. Model input parameters, such as the shrinkage kinetics and viscous parameters are obtained experimentally using optical dilatometry...

  18. Protein-lipid interactions in bilayer membranes: a lattice model.

    Science.gov (United States)

    Pink, D A; Chapman, D

    1979-04-01

    A lattice model has been developed to study the effects of intrinsic membrane proteins upon the thermodynamic properties of a lipid bilayer membrane. We assume that only nearest-neighbor van der Waals and steric interactions are important and that the polar group interactions can be represented by effective pressure-area terms. Phase diagrams, the temperature T(0), which locates the gel-fluid melting, the transition enthalpy, and correlations were calculated by mean field and cluster approximations. Average lipid chain areas and chain areas when the lipid is in a given protein environment were obtained. Proteins that have a "smooth" homogeneous surface ("cholesterol-like") and those that have inhomogeneous surfaces or that bind lipids specifically were considered. We find that T(0) can vary depending upon the interactions and that another peak can appear upon the shoulder of the main peak which reflects the melting of a eutectic mixture. The transition enthalpy decreases generally, as was found before, but when a second peak appears departures from this behavior reflect aspects of the eutectic mixture. We find that proteins have significant nonzero probabilities for being adjacent to one another so that no unbroken "annulus" of lipid necessarily exists around a protein. If T(0) does not increase much, or decreases, with increasing c, then lipids adjacent to a protein cannot all be all-trans on the time scale (10(-7) sec) of our system. Around a protein the lipid correlation depth is about one lipid layer, and this increases with c. Possible consequences of ignoring changes in polar group interactions due to clustering of proteins are discussed.

  19. Model for magnetostrictive performance in soft/hard coupled bilayers

    Energy Technology Data Exchange (ETDEWEB)

    Jianjun, Li, E-mail: ljj8081@gmail.com [National Key Laboratory of Science and Technology on Advanced Composites in Special Environments, Harbin Institute of Technology, Harbin 150080 (China); Laboratoire de Magnétisme de Bretagne, Université de Bretagne Occidentale, 29238 Brest Cedex 3 (France); Beibei, Duan; Minglun, Li [National Key Laboratory of Science and Technology on Advanced Composites in Special Environments, Harbin Institute of Technology, Harbin 150080 (China)

    2015-11-01

    A model is set up to investigate the magnetostrictive performance and spin response in soft/hard magnetostrictive coupled bilayers. Direct coupling between soft ferromagnet and hard TbFe{sub 2} at the interface is assumed. The magnetostriction results from the rotation of ferromagnetic vector and TbFe{sub 2} vectors from the easy axis driven by applied magnetic field. Dependence of magnetostriction on TbFe{sub 2} layer thickness and interfacial exchange interaction is studied. The simulated results reveal the compromise between interfacial exchange interaction and anisotropy of TbFe{sub 2} hard layer. - Highlights: • A model for magnetostrictive performance in soft/hard coupled bilayers. • Simulated magnetostriction loop and corresponding spin response. • Competition and compromise between interfacial interaction and TbFe{sub 2} anisotropy. • Dependence of saturated magnetostriction on different parameters.

  20. Bilayer Thickness Mismatch Controls Domain Size in Model Membranes

    Energy Technology Data Exchange (ETDEWEB)

    Heberle, Frederick A [ORNL; Petruzielo, Robin S [ORNL; Pan, Jianjun [ORNL; Drazba, Paul [ORNL; Kucerka, Norbert [Canadian Neutron Beam Centre and Comelius University (Slovakia); Feigenson, Gerald [Cornell University; Katsaras, John [ORNL

    2013-01-01

    The observation of lateral phase separation in lipid bilayers has received considerable attention, especially in connection to lipid raft phenomena in cells. It is widely accepted that rafts play a central role in cellular processes, notably signal transduction. While micrometer-sized domains are observed with some model membrane mixtures, rafts much smaller than 100 nm beyond the reach of optical microscopy are now thought to exist, both in vitro and in vivo. We have used small-angle neutron scattering, a probe free technique, to measure the size of nanoscopic membrane domains in unilamellar vesicles with unprecedented accuracy. These experiments were performed using a four-component model system containing fixed proportions of cholesterol and the saturated phospholipid 1,2-distearoyl-sn-glycero-3-phosphocholine (DSPC), mixed with varying amounts of the unsaturated phospholipids 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) and 1,2-dioleoylsn- glycero-3-phosphocholine (DOPC). We find that liquid domain size increases with the extent of acyl chain unsaturation (DOPC:POPC ratio). Furthermore, we find a direct correlation between domain size and the mismatch in bilayer thickness of the coexisting liquid-ordered and liquid-disordered phases, suggesting a dominant role for line tension in controlling domain size. While this result is expected from line tension theories, we provide the first experimental verification in free-floating bilayers. Importantly, we also find that changes in bilayer thickness, which accompany changes in the degree of lipid chain unsaturation, are entirely confined to the disordered phase. Together, these results suggest how the size of functional domains in homeothermic cells may be regulated through changes in lipid composition.

  1. Multiscale modeling of droplet interface bilayer membrane networks.

    Science.gov (United States)

    Freeman, Eric C; Farimani, Amir B; Aluru, Narayana R; Philen, Michael K

    2015-11-01

    Droplet interface bilayer (DIB) networks are considered for the development of stimuli-responsive membrane-based materials inspired by cellular mechanics. These DIB networks are often modeled as combinations of electrical circuit analogues, creating complex networks of capacitors and resistors that mimic the biomolecular structures. These empirical models are capable of replicating data from electrophysiology experiments, but these models do not accurately capture the underlying physical phenomena and consequently do not allow for simulations of material functionalities beyond the voltage-clamp or current-clamp conditions. The work presented here provides a more robust description of DIB network behavior through the development of a hierarchical multiscale model, recognizing that the macroscopic network properties are functions of their underlying molecular structure. The result of this research is a modeling methodology based on controlled exchanges across the interfaces of neighboring droplets. This methodology is validated against experimental data, and an extension case is provided to demonstrate possible future applications of droplet interface bilayer networks.

  2. Modeling the Elastic Properties of Lipid Bilayer Membranes

    Science.gov (United States)

    Barry, Edward; Gibaud, Thomas; Zakhary, Mark; Dogic, Zvonimir

    2011-03-01

    Model membranes such as lipid bilayers have been indispensable tools for our understanding of the elastic properties of biological membranes. In this talk, I will introduce a colloidal model for membranes and demonstrate that the physical properties of these colloidal membranes are identical to lipid bilayers. The model system is unique in that the constituent molecules are homogenous and non-amphiphilic, yet their self-assembly into membranes and other hierarchical assemblages, such as a lamellar type phases and chiral ribbons, proceeds spontaneously in solution. Owing to the large size of the constituent molecules, individual molecules can be directly visualized and simultaneous observations at the continuum and molecular lengthscales are used to characterize the behavior of model membranes with unprecedented detail. Moreover, once assembled in solution, molecular interactions can be controlled in situ. In particular, the strength of chiral interactions can be varied, leading to fascinating transitions in behavior that resembles the formation of starfish vesicles. These observations point towards the important role of line tension, and have potential implications for phase separated lipid mixtures or lipid rafts.

  3. Lipid Bilayers in the Gel Phase Become Saturated by Triton X-100 at Lower Surfactant Concentrations Than Those in the Fluid Phase

    Science.gov (United States)

    Ahyayauch, Hasna; Collado, M. Isabel; Alonso, Alicia; Goñi, Felix M.

    2012-01-01

    It has been repeatedly observed that lipid bilayers in the gel phase are solubilized by lower concentrations of Triton X-100, at least within certain temperature ranges, or other nonionic detergents than bilayers in the fluid phase. In a previous study, we showed that detergent partition coefficients into the lipid bilayer were the same for the gel and the fluid phases. In this contribution, turbidity, calorimetry, and 31P-NMR concur in showing that bilayers in the gel state (at least down to 13–20°C below the gel-fluid transition temperature) become saturated with detergent at lower detergent concentrations than those in the fluid state, irrespective of temperature. The different saturation may explain the observed differences in solubilization. PMID:22713566

  4. Investigating Hydrophilic Pores in Model Lipid Bilayers Using Molecular Simulations: Correlating Bilayer Properties with Pore-Formation Thermodynamics.

    Science.gov (United States)

    Hu, Yuan; Sinha, Sudipta Kumar; Patel, Sandeep

    2015-06-23

    Cell-penetrating and antimicrobial peptides show a remarkable ability to translocate across physiological membranes. Along with factors such as electric-potential-induced perturbations of membrane structure and surface tension effects, experiments invoke porelike membrane configurations during the solute transfer process into vesicles and cells. The initiation and formation of pores are associated with a nontrivial free-energy cost, thus necessitating a consideration of the factors associated with pore formation and the attendant free energies. Because of experimental and modeling challenges related to the long time scales of the translocation process, we use umbrella sampling molecular dynamics simulations with a lipid-density-based order parameter to investigate membrane-pore-formation free energy employing Martini coarse-grained models. We investigate structure and thermodynamic features of the pore in 18 lipids spanning a range of headgroups, charge states, acyl chain lengths, and saturation. We probe the dependence of pore-formation barriers on the area per lipid, lipid bilayer thickness, and membrane bending rigidities in three different lipid classes. The pore-formation free energy in pure bilayers and peptide translocating scenarios are significantly coupled with bilayer thickness. Thicker bilayers require more reversible work to create pores. The pore-formation free energy is higher in peptide-lipid systems than in peptide-free lipid systems due to penalties to maintain the solvation of charged hydrophilic solutes within the membrane environment.

  5. A Bilayer Resource Model for Cloud Manufacturing Services

    Directory of Open Access Journals (Sweden)

    Linan Zhu

    2013-01-01

    Full Text Available Cloud Manufacturing and Cloud Service is currently one of the main directions of development in the manufacturing industry. Under the Cloud Manufacturing environment, the characteristics of publishing, updating, searching, and accessing manufacturing resources are massive, complex, heterogeneous, and so forth. A bilayer manufacturing resource model with separation of Cloud End and Cloud Manufacturing Platform is proposed in this paper. In Cloud End, manufacturing resources are divided into single resource and complex resource, and a basic data model of manufacturing resources oriented to enterprise interior is established to store the physical characteristics. In Cloud Manufacturing Platform, a resource service attribute model oriented to actual users is established to store the service characteristics. This model is described in detail and realized with stateful Web Service Description Language (WSDL document. An example is provided for illustrating the implementation of the concept.

  6. Modeling Kinetics of Distortion in Porous Bi-layered Structures

    DEFF Research Database (Denmark)

    Tadesse Molla, Tesfaye; Frandsen, Henrik Lund; Bjørk, Rasmus;

    2013-01-01

    Shape distortions during constrained sintering experiment of bi-layer porous and dense cerium gadolinium oxide (CGO) structures have been modeled. Technologies like solid oxide fuel cells require co-firing thin layers with different green densities, which often exhibit differential shrinkage...... because of different sintering rates of the materials resulting in undesired distortions of the component. An analytical model based on the continuum theory of sintering has been developed to describe the kinetics of densification and distortion in the sintering processes. A new approach is used...... to extract the material parameters controlling shape distortion through optimizing the model to experimental data of free shrinkage strains. The significant influence of weight of the sample (gravity) on the kinetics of distortion is taken in to consideration. The modeling predictions indicate good agreement...

  7. COUPLED CHEMOTAXIS FLUID MODEL

    KAUST Repository

    LORZ, ALEXANDER

    2010-06-01

    We consider a model system for the collective behavior of oxygen-driven swimming bacteria in an aquatic fluid. In certain parameter regimes, such suspensions of bacteria feature large-scale convection patterns as a result of the hydrodynamic interaction between bacteria. The presented model consist of a parabolicparabolic chemotaxis system for the oxygen concentration and the bacteria density coupled to an incompressible Stokes equation for the fluid driven by a gravitational force of the heavier bacteria. We show local existence of weak solutions in a bounded domain in d, d = 2, 3 with no-flux boundary condition and in 2 in the case of inhomogeneous Dirichlet conditions for the oxygen. © 2010 World Scientific Publishing Company.

  8. Small-angle neutron scattering from multilamellar lipid bilayers: Theory, model, and experiment

    DEFF Research Database (Denmark)

    Lemmich, Jesper; Mortensen, Kell; Ipsen, John Hjorth

    1996-01-01

    Small-angle neutron scattering data obtained from fully hydrated, multilamellar phospholipid bilayers with deuterated acyl chains of different length are presented and analyzed within a paracrystalline theory and a geometric model that permit the bilayer structure to be determined under condition...

  9. Ground states of bilayered and extended t-J-U models

    Energy Technology Data Exchange (ETDEWEB)

    Voo, Khee-Kyun, E-mail: kkvoo@mail.oit.edu.tw

    2015-09-04

    The ground states of bilayered and extended t-J-U models are investigated with renormalized mean field theory. The trial wave functions are Gutzwiller projected Hartree–Fock states, and the site double occupancies are variational parameters. It is found that a spontaneous interlayer phase separation (PS) may arise in bilayers. In electron–hole doping asymmetric systems, the propensity for PS is stronger in electron doped bands. Via a PS, superconductivity can survive to lower doping densities, and antiferromagnetism in electron doped systems may survive to higher doping densities. The result is related to the superconducting cuprates. - Highlights: • Ground states in doped bilayered t-J-U models are studied. • Variational wave functions are Gutzwiller projected wave functions. • Site double occupancies are variational parameters. • Spontaneous interlayer phase separation may occur in bilayers. • Stronger tendency toward phase separation in electron doped bilayers.

  10. Modeling liquid crystal bilayer structures with minimal surfaces.

    Science.gov (United States)

    Enlow, J D; Enlow, R L; McGrath, K M; Tate, M W

    2004-01-22

    This paper describes a new convenient and accurate method of calculating x-ray diffraction integrated intensities from detailed cubic bilayer structures. The method is employed to investigate the structure of a particular surfactant system (didodecyldimethylammonium bromide in a solution of oil and heavy water), for which single-crystal experimental data have recently been collected. The diffracted peak intensities correlate well with theoretical structures based on mathematical minimal surfaces. Optimized electron density profiles of the bilayer are presented, providing new insight into key features of the bilayer structure.

  11. Magnetoviscous model fluids

    CERN Document Server

    Kröger, M; Hess, S

    2003-01-01

    We review, apply and compare diverse approaches to the theoretical understanding of the dynamical and rheological behaviour of ferrofluids and magnetorheological (MR) fluids subject to external magnetic and flow fields. Simple models are introduced which are directly solvable by nonequilibrium Brownian or molecular dynamics computer simulation. In particular, the numerical results for ferrofluids quantify the domain of validity of uniaxial alignment of magnetic moments (in and) out of equilibrium. A Fokker-Planck equation for the dynamics of the magnetic moments - corresponding to the Brownian dynamics approach - and its implications are analysed under this approximation. The basic approach considers the effect of external fields on the dynamics of ellipsoid shaped permanent ferromagnetic domains (aggregates), whose size should depend on the strength of flow and magnetic field, the magnetic interaction parameter and concentration (or packing fraction). Results from analytic calculations and from simulation ar...

  12. Bilayer Graphene Application on NO2 Sensor Modelling

    Directory of Open Access Journals (Sweden)

    Elnaz Akbari

    2014-01-01

    Full Text Available Graphene is one of the carbon allotropes which is a single atom thin layer with sp2 hybridized and two-dimensional (2D honeycomb structure of carbon. As an outstanding material exhibiting unique mechanical, electrical, and chemical characteristics including high strength, high conductivity, and high surface area, graphene has earned a remarkable position in today’s experimental and theoretical studies as well as industrial applications. One such application incorporates the idea of using graphene to achieve accuracy and higher speed in detection devices utilized in cases where gas sensing is required. Although there are plenty of experimental studies in this field, the lack of analytical models is felt deeply. To start with modelling, the field effect transistor- (FET- based structure has been chosen to serve as the platform and bilayer graphene density of state variation effect by NO2 injection has been discussed. The chemical reaction between graphene and gas creates new carriers in graphene which cause density changes and eventually cause changes in the carrier velocity. In the presence of NO2 gas, electrons are donated to the FET channel which is employed as a sensing mechanism. In order to evaluate the accuracy of the proposed models, the results obtained are compared with the existing experimental data and acceptable agreement is reported.

  13. A molecular dynamics model of rhodamine-labeled phospholipid incorporated into a lipid bilayer

    Science.gov (United States)

    Kyrychenko, Alexander

    2010-01-01

    Phospholipids, labeled covalently by a fluorescent dye, are commonly applied in membrane biophysics. In this work, a molecular dynamics model of sulforhodamine attached covalently to a headgroup of 1,2-dipalmitoyl- sn-glycero-3-phosphoethanolamine is developed. It is found that the incorporation of rhodamine-labeled phospholipids into a DPPC bilayer at the low concentration results in small perturbation of the bilayer. In the dye-labeled membrane, the sulforhodamine moiety binds favorably to a polar membrane interface, forming the tilt angle 44° ± 8° to the bilayer normal. The deep location and binding of a bulk sulforhodamine fluorophore lead, therefore, to some 'softening' of the membrane structure.

  14. Toward Quantitative Coarse-Grained Models of Lipids with Fluids Density Functional Theory.

    Science.gov (United States)

    Frink, Laura J Douglas; Frischknecht, Amalie L; Heroux, Michael A; Parks, Michael L; Salinger, Andrew G

    2012-04-10

    We describe methods to determine optimal coarse-grained models of lipid bilayers for use in fluids density functional theory (fluids-DFT) calculations. Both coarse-grained lipid architecture and optimal parametrizations of the models based on experimental measures are discussed in the context of dipalmitoylphosphatidylcholine (DPPC) lipid bilayers in water. The calculations are based on a combination of the modified-iSAFT theory for bonded systems and an accurate fundamental measures theory (FMT) for hard sphere reference fluids. We furthermore discuss a novel approach for pressure control in the fluids-DFT calculations that facilitates both partitioning studies and zero tension control for the bilayer studies. A detailed discussion of the numerical implementations for both solvers and pressure control capabilities are provided. We show that it is possible to develop a coarse-grained lipid bilayer model that is consistent with experimental properties (thickness and area per lipid) of DPPC provided that the coarse-graining is not too extreme. As a final test of the model, we find that the predicted area compressibility moduli and lateral pressure profiles of the optimized models are in reasonable agreement with prior results.

  15. Capillary electrophoresis with noncovalently bilayer-coated capillaries for stability study of allergenic proteins in simulated gastrointestinal fluids.

    Science.gov (United States)

    Zheng, Chang; Liu, Youping; Zhou, Qiuhong; Di, Xin

    2010-10-15

    A novel noncovalently bilayer-coated capillary using cationic polymer polybrene (PB) and anionic polymer (sodium 4-styrenesulfonate) (PSS) as coatings was prepared. This PB-PSS coating showed good migration-time reproducibility for proteins and high stability in the range of pH 2-10 and in the presence of 1M NaOH, acetonitrile and methanol. Capillary electrophoresis with PB-PSS coated capillaries was successfully applied to quantitatively investigate the stability of bovine serum albumin, ovomucoid, β-lactoglobulin and lysozyme in simulated gastrointestinal fluids. β-lactoglobulin A and β-lactoglobulin B were both stable in simulated gastric fluid with degradation percentages of 34.3% and 17.2% after 60min of incubation, respectively. Bovine serum albumin, ovomucoid and lysozyme were stable in simulated intestinal fluid with degradation percentages of 17.7%, 23.4% and 22.8% after 60min of incubation, respectively. The superiority of the proposed method over sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and capillary electrophoresis with untreated fused silica capillaries was demonstrated and emphasized.

  16. First-principles modeling hydrogenation of bilayered boron nitride

    Science.gov (United States)

    Jing, Wang; Peng, Zhang; Xiang-Mei, Duan

    2016-05-01

    We have investigated the structural and electronic characteristics of hydrogenated boron-nitride bilayer (H-BNBN-H) using first-principles calculations. The results show that hydrogenation can significantly reduce the energy gap of the BN-BN into the visible-light region. Interestingly, the electric field induced by the interface dipoles helps to promote the formation of well-separated electron-hole pairs, as demonstrated by the charge distribution of the VBM and CBM. Moreover, the applied bias voltage on the vertical direction of the bilayer could modulate the band gap, resulting in transition from semiconductor to metal. We conclude that H-BNBN-H could improve the solar energy conversion efficiency, which may provide a new way for tuning the electronic devices to meet different environments and demands. Project supported by the National Natural Science Foundation of China (Grant No. 11574167).

  17. Hybrid models for complex fluids

    CERN Document Server

    Tronci, Cesare

    2010-01-01

    This paper formulates a new approach to complex fluid dynamics, which accounts for microscopic statistical effects in the micromotion. While the ordinary fluid variables (mass density and momentum) undergo usual dynamics, the order parameter field is replaced by a statistical distribution on the order parameter space. This distribution depends also on the point in physical space and its dynamics retains the usual fluid transport features while containing the statistical information on the order parameter space. This approach is based on a hybrid moment closure for Yang-Mills Vlasov plasmas, which replaces the usual cold-plasma assumption. After presenting the basic properties of the hybrid closure, such as momentum map features, singular solutions and Casimir invariants, the effect of Yang-Mills fields is considered and a direct application to ferromagnetic fluids is presented. Hybrid models are also formulated for complex fluids with symmetry breaking. For the special case of liquid crystals, a hybrid formul...

  18. Molecular dynamics study of lipid bilayers modeling the plasma membranes of mouse hepatocytes and hepatomas

    Science.gov (United States)

    Andoh, Yoshimichi; Aoki, Noriyuki; Okazaki, Susumu

    2016-02-01

    Molecular dynamics (MD) calculations of lipid bilayers modeling the plasma membranes of normal mouse hepatocytes and hepatomas in water have been performed under physiological isothermal-isobaric conditions (310.15 K and 1 atm). The changes in the membrane properties induced by hepatic canceration were investigated and were compared with previous MD calculations included in our previous study of the changes in membrane properties induced by murine thymic canceration. The calculated model membranes for normal hepatocytes and hepatomas comprised 23 and 24 kinds of lipids, respectively. These included phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, phosphatidylinositol, sphingomyelin, lysophospholipids, and cholesterol. We referred to previously published experimental values for the mole fraction of the lipids adopted in the present calculations. The calculated structural and dynamic properties of the membranes such as lateral structure, order parameters, lateral self-diffusion constants, and rotational correlation times all showed that hepatic canceration causes plasma membranes to become more ordered laterally and less fluid. Interestingly, this finding contrasts with the less ordered structure and increased fluidity of plasma membranes induced by thymic canceration observed in our previous MD study.

  19. Effect of neurosteroids on a model lipid bilayer including cholesterol: An Atomic Force Microscopy study.

    Science.gov (United States)

    Sacchi, Mattia; Balleza, Daniel; Vena, Giulia; Puia, Giulia; Facci, Paolo; Alessandrini, Andrea

    2015-05-01

    Amphiphilic molecules which have a biological effect on specific membrane proteins, could also affect lipid bilayer properties possibly resulting in a modulation of the overall membrane behavior. In light of this consideration, it is important to study the possible effects of amphiphilic molecule of pharmacological interest on model systems which recapitulate some of the main properties of the biological plasma membranes. In this work we studied the effect of a neurosteroid, Allopregnanolone (3α,5α-tetrahydroprogesterone or Allo), on a model bilayer composed by the ternary lipid mixture DOPC/bSM/chol. We chose ternary mixtures which present, at room temperature, a phase coexistence of liquid ordered (Lo) and liquid disordered (Ld) domains and which reside near to a critical point. We found that Allo, which is able to strongly partition in the lipid bilayer, induces a marked increase in the bilayer area and modifies the relative proportion of the two phases favoring the Ld phase. We also found that the neurosteroid shifts the miscibility temperature to higher values in a way similarly to what happens when the cholesterol concentration is decreased. Interestingly, an isoform of Allo, isoAllopregnanolone (3β,5α-tetrahydroprogesterone or isoAllo), known to inhibit the effects of Allo on GABAA receptors, has an opposite effect on the bilayer properties.

  20. Improved Modeling Approaches for Constrained Sintering of Bi-Layered Porous Structures

    DEFF Research Database (Denmark)

    Tadesse Molla, Tesfaye; Frandsen, Henrik Lund; Esposito, Vincenzo;

    2012-01-01

    Shape instabilities during constrained sintering experiment of bi-layer porous and dense cerium gadolinium oxide (CGO) structures have been analyzed. An analytical and a numerical model based on the continuum theory of sintering has been implemented to describe the evolution of bow and densificat......Shape instabilities during constrained sintering experiment of bi-layer porous and dense cerium gadolinium oxide (CGO) structures have been analyzed. An analytical and a numerical model based on the continuum theory of sintering has been implemented to describe the evolution of bow...

  1. Shearfree Spherically Symmetric Fluid Models

    CERN Document Server

    Sharif, M

    2013-01-01

    We try to find some exact analytical models of spherically symmetric spacetime of collapsing fluid under shearfree condition. We consider two types of solutions: one is to impose a condition on the mass function while the other is to restrict the pressure. We obtain totally of five exact models, and some of them satisfy the Darmois conditions.

  2. Multiscale Modeling of Dendrimers and Their Interactions with Bilayers and Polyelectrolytes

    Directory of Open Access Journals (Sweden)

    Ronald G. Larson

    2009-01-01

    Full Text Available Recent advances in molecular dynamics simulation methodologies and computational power have allowed accurate predictions of dendrimer size, shape, and interactions with bilayers and polyelectrolytes with modest computational effort. Atomistic and coarse-grained (CG models show strong interactions of cationic dendrimers with lipid bilayers. The CG simulations with explicit lipid and water capture bilayer penetration and pore formation, showing that pore formation is enhanced at high dendrimer concentration, but suppressed at low temperature and high salt concentration, in agreement with experiments. Cationic linear polymers have also been simulated, but do not perforate membranes, evidently because by deforming into a pancake, the charges on a linear polymer achieve intimate contact with a single bilayer leaflet. The relatively rigid dendrimers, on the other hand, penetrate the bilayer, because only by interacting with both leaflets can they achieve a similar degree of contact between charged groups. Also, a “dendrimer-filled vesicle” structure for the dendrimer-membrane interaction is predicted by mesoscale thermodynamic simulations, in agreement with a picture derived from experimental observations. In simulations of complexes of dendrimer and polyelectrolyte, anionic linear chains wrap around the cationic dendrimer and penetrate inside it. Overall, these new results indicate that simulations can now provide predictions in excellent agreement with experimental observations, and provide atomic-scale insights into dendrimer structure and dynamics.

  3. Simulation studies of protein-induced bilayer deformations, and lipid-induced protein tilting, on a mesoscopic model for lipid bilayers with embedded proteins

    DEFF Research Database (Denmark)

    Venturoli, M.; Smit, B.; Sperotto, Maria Maddalena

    2005-01-01

    for positive values of mismatch; a dependence on the protein size appears as well. In the case of large model proteins experiencing extreme mismatch conditions, in the region next to the so-called lipid annulus, there appears an undershooting ( or overshooting) region where the bilayer hydrophobic thickness...... a small size, the main mechanism to compensate for a large hydrophobic mismatch is the tilt, whereas large proteins react to negative mismatch by causing an increase of the hydrophobic thickness of the nearby bilayer. Furthermore, for the case of small, peptidelike proteins, we found the same type...

  4. Coarse-grained modeling of interactions of lipid bilayers with supports

    Science.gov (United States)

    Hoopes, Matthew I.; Deserno, Markus; Longo, Margie L.; Faller, Roland

    2008-11-01

    We characterize the differences between supported and unsupported lipid bilayer membranes using a mesoscopic simulation model and a simple particle-based realization for a flat support on to which the lipids are adsorbed. We show that the nanometer roughness of the support affects membrane binding strength very little. We then compare the lipid distributions and pressure profiles of free and supported membranes. The surface localization of the proximal leaflet breaks the symmetry seen in a free bilayer, and we quantify the entropic penalty for binding and the increased lateral compression modulus.

  5. Ground states of bilayered and extended t-J-U models

    Science.gov (United States)

    Voo, Khee-Kyun

    2015-09-01

    The ground states of bilayered and extended t-J-U models are investigated with renormalized mean field theory. The trial wave functions are Gutzwiller projected Hartree-Fock states, and the site double occupancies are variational parameters. It is found that a spontaneous interlayer phase separation (PS) may arise in bilayers. In electron-hole doping asymmetric systems, the propensity for PS is stronger in electron doped bands. Via a PS, superconductivity can survive to lower doping densities, and antiferromagnetism in electron doped systems may survive to higher doping densities. The result is related to the superconducting cuprates.

  6. Self-consistent mean-field model for palmitoyloleoylphosphatidylcholine-palmitoyl sphingomyelin-cholesterol lipid bilayers

    Science.gov (United States)

    Tumaneng, Paul W.; Pandit, Sagar A.; Zhao, Guijun; Scott, H. L.

    2011-03-01

    The connection between membrane inhomogeneity and the structural basis of lipid rafts has sparked interest in the lateral organization of model lipid bilayers of two and three components. In an effort to investigate anisotropic lipid distribution in mixed bilayers, a self-consistent mean-field theoretical model is applied to palmitoyloleoylphosphatidylcholine (POPC)-palmitoyl sphingomyelin (PSM)-cholesterol mixtures. The compositional dependence of lateral organization in these mixtures is mapped onto a ternary plot. The model utilizes molecular dynamics simulations to estimate interaction parameters and to construct chain conformation libraries. We find that at some concentration ratios the bilayers separate spatially into regions of higher and lower chain order coinciding with areas enriched with PSM and POPC, respectively. To examine the effect of the asymmetric chain structure of POPC on bilayer lateral inhomogeneity, we consider POPC-lipid interactions with and without angular dependence. Results are compared with experimental data and with results from a similar model for mixtures of dioleoylphosphatidylcholine, steroyl sphingomyelin, and cholesterol.

  7. Finite element modeling of camber evolution during sintering of bi-layers

    DEFF Research Database (Denmark)

    Tadesse Molla, Tesfaye; Ni, De Wei; Bulatova, Regina

    2014-01-01

    The need for understanding the mechanisms and optimization of shape distortions during sintering of bilayers is necessary while producing structures with functionally graded architectures. A finite element model based on the continuum theory of sintering was developed to understand the camber...

  8. Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. II. Distribution and packing of terminal methyl groups.

    OpenAIRE

    Wiener, M C; White, S H

    1992-01-01

    We continue in this paper the presentation of theoretical and experimental methods for the joint refinement of neutron and x-ray lamellar diffraction data for the analysis of fluid (L alpha phase) bilayer structure (Wiener, M. C., and S. H. White. 1991 a, b, c. Biophys. J. 59:162-173 and 174-185; Biochemistry. 30:6997-7008; Wiener, M. C., G. I. King, and S. H. White. Biophys. J. 60: 568-576). We show how to obtain the distribution and packing of the terminal methyls in the interior of a fluid...

  9. Lipid domains control myelin basic protein adsorption and membrane interactions between model myelin lipid bilayers.

    Science.gov (United States)

    Lee, Dong Woog; Banquy, Xavier; Kristiansen, Kai; Kaufman, Yair; Boggs, Joan M; Israelachvili, Jacob N

    2014-02-25

    The surface forces apparatus and atomic force microscope were used to study the effects of lipid composition and concentrations of myelin basic protein (MBP) on the structure of model lipid bilayers, as well as the interaction forces and adhesion between them. The lipid bilayers had a lipid composition characteristic of the cytoplasmic leaflets of myelin from "normal" (healthy) and "disease-like" [experimental allergic encephalomyelitis (EAE)] animals. They showed significant differences in the adsorption mechanism of MBP. MBP adsorbs on normal bilayers to form a compact film (3-4 nm) with strong intermembrane adhesion (∼0.36 mJ/m(2)), in contrast to its formation of thicker (7-8 nm) swelled films with weaker intermembrane adhesion (∼0.13 mJ/m(2)) on EAE bilayers. MBP preferentially adsorbs to liquid-disordered submicron domains within the lipid membranes, attributed to hydrophobic attractions. These results show a direct connection between the lipid composition of membranes and membrane-protein adsorption mechanisms that affects intermembrane spacing and adhesion and has direct implications for demyelinating diseases.

  10. A bilayer Double Semion model with symmetry-enriched topological order

    Science.gov (United States)

    Ortiz, L.; Martin-Delgado, M. A.

    2016-12-01

    We construct a new model of two-dimensional quantum spin systems that combines intrinsic topological orders and a global symmetry called flavour symmetry. It is referred as the bilayer Doubled Semion model (bDS) and is an instance of symmetry-enriched topological order. A honeycomb bilayer lattice is introduced to combine a Double Semion Topological Order with a global spin-flavour symmetry to get the fractionalization of its quasiparticles. The bDS model exhibits non-trivial braiding self-statistics of excitations and its dual model constitutes a Symmetry-Protected Topological Order with novel edge states. This dual model gives rise to a bilayer Non-Trivial Paramagnet that is invariant under the flavour symmetry and the well-known spin flip symmetry. On the one hand, the Hermele model is constructed with a square lattice in a multilayer structure that forms a quasi-three-dimensional model, but the square lattice cannot support a DS model. (see Appendix C and [39]). On the other hand, the Levin-Gu method is realized on a single hexagonal layer, but we would need a multilayer realization of that construction. This is problematic since the necessary coordination condition (3) is incompatible with a multilayer structure of honeycomb layers. Interestingly enough, we can rephrase this compatibility problem between these two fractionalization methods as a compatibility condition between global symmetries. The key point is to realize that the Levin-Gu method deals with a spin-flip symmetry, e.g. G = Z2fs, explicitly shown in the spin model introduced in Section 4, while the Hermele method is about a spin-flavour symmetry among lattice layers, e.g. G = Z2fv. This spin-favour symmetry is present explicitly in the string model presented in Eq. (26).We hereby summarize briefly some of our main results:i/ We have constructed a bilayer Doubled Semion (bDS) model that has intrinsic topological orders of type G =Z2 and is invariant under the global symmetry group G = Z2fv

  11. Complex fluids modeling and algorithms

    CERN Document Server

    Saramito, Pierre

    2016-01-01

    This book presents a comprehensive overview of the modeling of complex fluids, including many common substances, such as toothpaste, hair gel, mayonnaise, liquid foam, cement and blood, which cannot be described by Navier-Stokes equations. It also offers an up-to-date mathematical and numerical analysis of the corresponding equations, as well as several practical numerical algorithms and software solutions for the approximation of the solutions. It discusses industrial (molten plastics, forming process), geophysical (mud flows, volcanic lava, glaciers and snow avalanches), and biological (blood flows, tissues) modeling applications. This book is a valuable resource for undergraduate students and researchers in applied mathematics, mechanical engineering and physics.

  12. Off-lattice model for the phase behavior of lipid-cholesterol bilayers

    DEFF Research Database (Denmark)

    Nielsen, Morten; Miao, Ling; Ipsen, John Hjorth

    1999-01-01

    Lipid bilayers exhibit a phase behavior that involves two distinct, but coupled, order-disorder processes, one in terms of lipid-chain crystalline packing (translational degrees of freedom) and the other in terms of lipid-chain conformational ordering (internal degrees of freedom). Experiments...... and previous approximate theories have suggested that cholesterol incorporated into lipid bilayers has different microscopic effects on lipid-chain packing and conformations and that cholesterol thereby leads to decoupling of the two ordering processes, manifested by a special equilibrium phase, "liquid......-lattice model based on a two-dimensional random triangulation algorithm and represents lipid and cholesterol molecules by hard-core particles with internal (spin-type) degrees of freedom that have nearest-neighbor interactions. The phase equilibria described by the model, specifically in terms of phase diagrams...

  13. Standardization of Thermo-Fluid Modeling in Modelica.Fluid

    Energy Technology Data Exchange (ETDEWEB)

    Franke, Rudiger; Casella, Francesco; Sielemann, Michael; Proelss, Katrin; Otter, Martin; Wetter, Michael

    2009-09-01

    This article discusses the Modelica.Fluid library that has been included in the Modelica Standard Library 3.1. Modelica.Fluid provides interfaces and basic components for the device-oriented modeling of onedimensional thermo-fluid flow in networks containing vessels, pipes, fluid machines, valves and fittings. A unique feature of Modelica.Fluid is that the component equations and the media models as well as pressure loss and heat transfer correlations are decoupled from each other. All components are implemented such that they can be used for media from the Modelica.Media library. This means that an incompressible or compressible medium, a single or a multiple substance medium with one or more phases might be used with one and the same model as long as the modeling assumptions made hold. Furthermore, trace substances are supported. Modeling assumptions can be configured globally in an outer System object. This covers in particular the initialization, uni- or bi-directional flow, and dynamic or steady-state formulation of mass, energy, and momentum balance. All assumptions can be locally refined for every component. While Modelica.Fluid contains a reasonable set of component models, the goal of the library is not to provide a comprehensive set of models, but rather to provide interfaces and best practices for the treatment of issues such as connector design and implementation of energy, mass and momentum balances. Applications from various domains are presented.

  14. Ground state phase diagram of the half-filled bilayer Hubbard model

    OpenAIRE

    Golor, Michael; Reckling, Timo; Classen, Laura; Scherer, Michael M.; Wessel, Stefan

    2014-01-01

    Employing a combination of functional renormalization group calculations and projective determinantal quantum Monte Carlo simulations, we examine the Hubbard model on the square lattice bilayer at half filling. From this combined analysis, we obtain a comprehensive account on the ground state phase diagram with respect to the extent of the system's metallic and (antiferromagnetically ordered) Mott-insulating as well as band-insulating regions. By means of an unbiased functional renormalizatio...

  15. Analytical model for the photocurrent-voltage characteristics of bilayer MEH-PPV/TiO2 photovoltaic devices

    OpenAIRE

    Chen, Chong; Wu, Fan; Geng, Hongwei; Shen, Wei; Wang, Mingtai

    2011-01-01

    The photocurrent in bilayer polymer photovoltaic cells is dominated by the exciton dissociation efficiency at donor/acceptor interface. An analytical model is developed for the photocurrent-voltage characteristics of the bilayer polymer/TiO2 photovoltaic cells. The model gives an analytical expression for the exciton dissociation efficiency at the interface, and explains the dependence of the photocurrent of the devices on the internal electric field, the polymer and TiO2 layer thicknesses. B...

  16. Large-signal model of the bilayer graphene field-effect transistor targeting radio-frequency applications: Theory versus experiment

    Energy Technology Data Exchange (ETDEWEB)

    Pasadas, Francisco, E-mail: Francisco.Pasadas@uab.cat; Jiménez, David [Departament d' Enginyeria Electrònica, Escola d' Enginyeria, Universitat Autònoma de Barcelona, 08193 Bellaterra (Spain)

    2015-12-28

    Bilayer graphene is a promising material for radio-frequency transistors because its energy gap might result in a better current saturation than the monolayer graphene. Because the great deal of interest in this technology, especially for flexible radio-frequency applications, gaining control of it requires the formulation of appropriate models for the drain current, charge, and capacitance. In this work, we have developed them for a dual-gated bilayer graphene field-effect transistor. A drift-diffusion mechanism for the carrier transport has been considered coupled with an appropriate field-effect model taking into account the electronic properties of the bilayer graphene. Extrinsic resistances have been included considering the formation of a Schottky barrier at the metal-bilayer graphene interface. The proposed model has been benchmarked against experimental prototype transistors, discussing the main figures of merit targeting radio-frequency applications.

  17. Bilayer Suspension Plasma-Sprayed Thermal Barrier Coatings with Enhanced Thermal Cyclic Lifetime: Experiments and Modeling

    Science.gov (United States)

    Gupta, Mohit; Kumara, Chamara; Nylén, Per

    2017-08-01

    Suspension plasma spraying (SPS) has been shown as a promising process to produce porous columnar strain tolerant coatings for thermal barrier coatings (TBCs) in gas turbine engines. However, the highly porous structure is vulnerable to crack propagation, especially near the topcoat-bondcoat interface where high stresses are generated due to thermal cycling. A topcoat layer with high toughness near the topcoat-bondcoat interface could be beneficial to enhance thermal cyclic lifetime of SPS TBCs. In this work, a bilayer coating system consisting of first a dense layer near the topcoat-bondcoat interface followed by a porous columnar layer was fabricated by SPS using Yttria-stabilised zirconia suspension. The objective of this work was to investigate if the bilayer topcoat architecture could enhance the thermal cyclic lifetime of SPS TBCs through experiments and to understand the effect of the column gaps/vertical cracks and the dense layer on the generated stresses in the TBC during thermal cyclic loading through finite element modeling. The experimental results show that the bilayer TBC had significantly higher lifetime than the single-layer TBC. The modeling results show that the dense layer and vertical cracks are beneficial as they reduce the thermally induced stresses which thus increase the lifetime.

  18. A comprehensive flexoelectric model for droplet interface bilayers acting as sensors and energy harvesters

    Science.gov (United States)

    Kancharala, Ashok; Freeman, Eric; Philen, Michael

    2016-10-01

    Droplet interface bilayers have found applications in the development of biologically-inspired mechanosensors. In this research, a comprehensive flexoelectric framework has been developed to predict the mechanoelectric capabilities of the biological membrane under mechanical excitation for sensing and energy harvesting applications. The dynamic behavior of the droplets has been modeled using nonlinear finite element analysis, coupled with a flexoelectric model for predicting the resulting material polarization. This coupled model allows for the prediction of the mechanoelectrical response of the droplets under excitation. Using the developed framework, the potential for sensing and energy harvesting through lipid membranes is investigated.

  19. Fluctuations in lipid bilayers: Are they understood?

    CERN Document Server

    Schmid, Friederike

    2013-01-01

    We review recent computer simulation studies of undulating lipid bilayers. Theoretical interpretations of such fluctuating membranes are most commonly based on generalized Helfrich-type elastic models, with additional contributions of local "protrusions" and/or density fluctuations. Such models provide an excellent basis for describing the fluctuations of tensionless bilayers in the fluid phase at a quantitative level. However, this description is found to fail for membranes in the gel phase and for membranes subject to high tensions. The fluctuations of tilted gel membranes show a signature of the modulated ripple structure, which is a nearby phase observed in the pretransition regime between the fluid and tilted gel state. This complicates a quantitative analysis on mesoscopic length scales. In the case of fluid membranes under tension, the large-wavelength fluctuation modes are found to be significantly softer than predicted by theory. In the latter context, we also address the general problem of the relat...

  20. Equilibrium Configurations of Lipid Bilayer Membranes and Carbon Nanostructures

    Institute of Scientific and Technical Information of China (English)

    Iva(i)lo M.Mladenov; Peter A.Djondjorov; Mariana Ts.Hadzhilazova; Vassil M.Vassilev

    2013-01-01

    The present article concerns the continuum modelling of the mechanical behaviour and equilibrium shapes of two types of nano-scale objects:fluid lipid bilayer membranes and carbon nanostructures.A unified continuum model is used to handle four different case studies.Two of them consist in representing in analytic form cylindrical and axisymmetric equilibrium configurations of single-wall carbon nanotubes and fluid lipid bilayer membranes subjected to uniform hydrostatic pressure.The third one is concerned with determination of possible shapes of junctions between a single-wall carbon nanotube and a fiat graphene sheet or another single-wall carbon nanotube.The last one deals with the mechanical behaviour of closed fluid lipid bilayer membranes (vesicles) adhering onto a fiat homogeneous rigid substrate subjected to micro-injection and uniform hydrostatic pressure.

  1. Modeling Amyloid Beta Peptide Insertion into Lipid Bilayers

    CERN Document Server

    Mobley, D L; Singh, R R P; Maddox, M W; Longo, M J; Mobley, David L.; Cox, Daniel L.; Singh, Rajiv R. P.; Maddox, Michael W.; Longo, Marjorie L.

    2003-01-01

    Inspired by recent suggestions that the Alzheimer's amyloid beta peptide (A-beta), can insert into cell membranes and form harmful ion channels, we model insertion of the peptide into cell membranes using a Monte Carlo code which is specific at the amino acid level. We examine insertion of the regular A-beta peptide as well as mutants causing familial Alzheimer's disease. We present our results and develop the hypothesis that partial insertion into the membrane, leaving the peptide in one leaflet, increases the probability of harmful channel formation. This hypothesis can partly explain why these mutations are neurotoxic simply due to peptide insertion behavior, and also explains why, normally, A-beta 42 is more toxic to some cultured cells than A-beta 40, but the E22Q mutation reverses this effect. We further apply this model to various artificial A-beta mutants which have been examined experimentally, and offer testable experimental predictions contrasting the roles of aggregation and insertion with regard ...

  2. Modeling Yeast Organelle Membranes and How Lipid Diversity Influences Bilayer Properties.

    Science.gov (United States)

    Monje-Galvan, Viviana; Klauda, Jeffery B

    2015-11-17

    Membrane lipids are important for the health and proper function of cell membranes. We have improved computational membrane models for specific organelles in yeast Saccharomyces cerevisiae to study the effect of lipid diversity on membrane structure and dynamics. Previous molecular dynamics simulations were performed by Jo et al. [(2009) Biophys J. 97, 50-58] on yeast membrane models having six lipid types with compositions averaged between the endoplasmic reticulum (ER) and the plasma membrane (PM). We incorporated ergosterol, phosphatidic acid, phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, and phosphatidylinositol lipids in our models to better describe the unique composition of the PM, ER, and trans-Golgi network (TGN) bilayers of yeast. Our results describe membrane structure based on order parameters (SCD), electron density profiles (EDPs), and lipid packing. The average surface area per lipid decreased from 63.8 ± 0.4 Å(2) in the ER to 47.1 ± 0.3 Å(2) in the PM, while the compressibility modulus (KA) varied in the opposite direction. The high SCD values for the PM lipids indicated a more ordered bilayer core, while the corresponding lipids in the ER and TGN models had lower parameters by a factor of at least 0.7. The hydrophobic core thickness (2DC) as estimated from EDPs is the thickest for PM, which is in agreement with estimates of hydrophobic regions of transmembrane proteins from the Orientation of Proteins in Membranes database. Our results show the importance of lipid diversity and composition on a bilayer's structural and mechanical properties, which in turn influences interactions with the proteins and membrane-bound molecules.

  3. IMPROVEMENT OF FLUID PIPE LUMPED PARAMETER MODEL

    Institute of Scientific and Technical Information of China (English)

    Kong Xiaowu; Wei Jianhua; Qiu Minxiu; Wu Genmao

    2004-01-01

    The traditional lumped parameter model of fluid pipe is introduced and its drawbacks are pointed out.Furthermore, two suggestions are put forward to remove these drawbacks.Firstly, the structure of equivalent circuit is modified, and then the evaluation of equivalent fluid resistance is change to take the frequency-dependent friction into account.Both simulation and experiment prove that this model is precise to characterize the dynamic behaviors of fluid in pipe.

  4. Microscopic theoretical model study of band gap opening in AA-stacked bi-layer graphene

    Science.gov (United States)

    Sahu, Sivabrata; Parashar, S. K. S.; Rout, G. C.

    2016-05-01

    We address here a tight-binding theoretical model calculation for AA-stacked bi-layer graphene taking into account of a biased potential between two layers to study the density of states and the band dispersion within the total Brillouin zone. We have calculated the electronic Green's function for electron operator corresponding to A and B sub lattices by Zubarev's Green's function technique from which the electronic density of states and the electron band energy dispersion are calculated. The numerically computed density of states and band energy dispersions are investigated by tuning the biased potential to exhibit the band gap by varying the different physical parameters.

  5. Determining the orientation of protegrin-1 in DLPC bilayers using an implicit solvent-membrane model.

    Directory of Open Access Journals (Sweden)

    Abdallah Sayyed-Ahmad

    Full Text Available Continuum models that describe the effects of solvent and biological membrane molecules on the structure and behavior of antimicrobial peptides, holds a promise to improve our understanding of the mechanisms of antimicrobial action of these peptides. In such methods, a lipid bilayer model membrane is implicitly represented by multiple layers of relatively low dielectric constant embedded in a high dielectric aqueous solvent, while an antimicrobial peptide is accounted for by a dielectric cavity with fixed partial charge at the center of each one of its atoms. In the present work, we investigate the ability of continuum approaches to predict the most probable orientation of the beta-hairpin antimicrobial peptide Protegrin-1 (PG-1 in DLPC lipid bilayers by calculating the difference in the transfer free energy from an aqueous environment to a membrane-water environment for multiple orientations. The transfer free energy is computed as a sum of two terms; polar/electrostatic and non-polar. They both include energetic and entropic contributions to the free energy. We numerically solve the Poisson-Boltzmann equation to calculate the electrostatic contribution to the transfer free energy, while the non-polar contribution to the free energy is approximated using a linear solvent accessible surface area relationships. The most probable orientation of PG-1 is that with the lowest relative transfer free energy. Our simulation results indicate that PG-1 assumes an oblique orientation in DLPC lipid bilayers. The predicted most favorable orientation was with a tilt angle of 19 degrees, which is in qualitative agreement with the experimentally observed orientations derived from solid-state NMR data.

  6. Linking lipid architecture to bilayer structure and mechanics using self-consistent field modelling

    Energy Technology Data Exchange (ETDEWEB)

    Pera, H.; Kleijn, J. M.; Leermakers, F. A. M., E-mail: Frans.leermakers@wur.nl [Laboratory of Physical Chemistry and Colloid Science, Wageningen University, Dreijenplein 6, 6307 HB Wageningen (Netherlands)

    2014-02-14

    To understand how lipid architecture determines the lipid bilayer structure and its mechanics, we implement a molecularly detailed model that uses the self-consistent field theory. This numerical model accurately predicts parameters such as Helfrichs mean and Gaussian bending modulus k{sub c} and k{sup ¯} and the preferred monolayer curvature J{sub 0}{sup m}, and also delivers structural membrane properties like the core thickness, and head group position and orientation. We studied how these mechanical parameters vary with system variations, such as lipid tail length, membrane composition, and those parameters that control the lipid tail and head group solvent quality. For the membrane composition, negatively charged phosphatidylglycerol (PG) or zwitterionic, phosphatidylcholine (PC), and -ethanolamine (PE) lipids were used. In line with experimental findings, we find that the values of k{sub c} and the area compression modulus k{sub A} are always positive. They respond similarly to parameters that affect the core thickness, but differently to parameters that affect the head group properties. We found that the trends for k{sup ¯} and J{sub 0}{sup m} can be rationalised by the concept of Israelachivili's surfactant packing parameter, and that both k{sup ¯} and J{sub 0}{sup m} change sign with relevant parameter changes. Although typically k{sup ¯}<0, membranes can form stable cubic phases when the Gaussian bending modulus becomes positive, which occurs with membranes composed of PC lipids with long tails. Similarly, negative monolayer curvatures appear when a small head group such as PE is combined with long lipid tails, which hints towards the stability of inverse hexagonal phases at the cost of the bilayer topology. To prevent the destabilisation of bilayers, PG lipids can be mixed into these PC or PE lipid membranes. Progressive loading of bilayers with PG lipids lead to highly charged membranes, resulting in J{sub 0}{sup m}≫0, especially at low ionic

  7. Magnetically aligned phospholipid bilayers with positive ordering: a new model membrane system.

    Science.gov (United States)

    Prosser, R S; Hwang, J S; Vold, R R

    1998-01-01

    A stable smectic phospholipid bilayer phase aligned with the director parallel to the magnetic field can be generated by the addition of certain trivalent paramagnetic lanthanide ions to a bicellar solution of dimyristoylphosphatidylcholine (DMPC) and dihexanoylphosphatidylcholine (DHPC) in water. Suitable lanthanide ions are those with positive anisotropy of their magnetic susceptibility, namely Eu3+, Er3+, Tm3+, and Yb3+. For samples doped with Tm3+, this phase extends over a wide range of Tm3+ concentrations (6-40 mM) and temperatures (35-90 degrees C) and appears to undergo a transition from a fluid nematic discotic to a fluid, but highly ordered, smectic phase at a temperature that depends on the thulium concentration. As a membrane mimetic, these new, positively ordered phospholipid phases have high potential for structural studies using a variety of techniques such as magnetic resonance (EMR and NMR), small-angle x-ray and neutron diffraction, as well as optical and infrared spectroscopy. PMID:9591667

  8. The Effect of Lidocaine · HCl on the Fluidity of Native and Model Membrane Lipid Bilayers.

    Science.gov (United States)

    Park, Jun-Seop; Jung, Tae-Sang; Noh, Yang-Ho; Kim, Woo-Sung; Park, Won-Ick; Kim, Young-Soo; Chung, In-Kyo; Sohn, Uy Dong; Bae, Soo-Kyung; Bae, Moon-Kyoung; Jang, Hye-Ock; Yun, Il

    2012-12-01

    The purpose of this study is to investigated the mechanism of pharmacological action of local anesthetic and provide the basic information about the development of new effective local anesthetics. Fluorescent probe techniques were used to evaluate the effect of lidocaine·HCl on the physical properties (transbilayer asymmetric lateral and rotational mobility, annular lipid fluidity and protein distribution) of synaptosomal plasma membrane vesicles (SPMV) isolated from bovine cerebral cortex, and liposomes of total lipids (SPMVTL) and phospholipids (SPMVPL) extracted from the SPMV. An experimental procedure was used based on selective quenching of 1,3-di(1-pyrenyl)propane (Py-3-Py) and 1,6-diphenyl-1,3,5-hexatriene (DPH) by trinitrophenyl groups, and radiationless energy transfer from the tryptophans of membrane proteins to Py-3-Py. Lidocaine·HCl increased the bulk lateral and rotational mobility of neuronal and model membrane lipid bilayes, and had a greater fluidizing effect on the inner monolayer than the outer monolayer. Lidocaine·HCl increased annular lipid fluidity in SPMV lipid bilayers. It also caused membrane proteins to cluster. The most important finding of this study is that there is far greater increase in annular lipid fluidity than that in lateral and rotational mobilities by lidocaine·HCl. Lidocaine·HCl alters the stereo or dynamics of the proteins in the lipid bilayers by combining with lipids, especially with the annular lipids. In conclusion, the present data suggest that lidocaine, in addition to its direct interaction with proteins, concurrently interacts with membrane lipids, fluidizing the membrane, and thus inducing conformational changes of proteins known to be intimately associated with membrane lipid.

  9. A drift-diffusion-reaction model for excitonic photovoltaic bilayers: Photovoltaic bilayers: Asymptotic analysis and a 2D hdg finite element scheme

    KAUST Repository

    Brinkman, Daniel

    2013-05-01

    We present and discuss a mathematical model for the operation of bilayer organic photovoltaic devices. Our model couples drift-diffusion-recombination equations for the charge carriers (specifically, electrons and holes) with a reaction-diffusion equation for the excitons/polaron pairs and Poisson\\'s equation for the self-consistent electrostatic potential. The material difference (i.e. the HOMO/LUMO gap) of the two organic substrates forming the bilayer device is included as a work-function potential. Firstly, we perform an asymptotic analysis of the scaled one-dimensional stationary state system: (i) with focus on the dynamics on the interface and (ii) with the goal of simplifying the bulk dynamics away from the interface. Secondly, we present a two-dimensional hybrid discontinuous Galerkin finite element numerical scheme which is very well suited to resolve: (i) the material changes, (ii) the resulting strong variation over the interface, and (iii) the necessary upwinding in the discretization of drift-diffusion equations. Finally, we compare the numerical results with the approximating asymptotics. © 2013 World Scientific Publishing Company.

  10. Modelling anisotropic fluid spheres in general relativity

    CERN Document Server

    Boonserm, Petarpa; Visser, Matt

    2015-01-01

    We argue that an arbitrary general relativistic anisotropic fluid sphere, (spherically symmetric but with transverse pressure not equal to radial pressure), can nevertheless be successfully modelled by suitable linear combinations of quite ordinary classical matter: an isotropic perfect fluid, a classical electromagnetic field, and a classical (minimally coupled) scalar field. While the most general decomposition is not unique, a preferred minimal decomposition can be constructed that is unique. We show how the classical energy conditions for the anisotropic fluid sphere can be related to energy conditions for the isotropic perfect fluid, electromagnetic field, and scalar field components of the model. Furthermore we show how this decomposition relates to the distribution of electric charge density and scalar charge density throughout the model that is used to mimic the anisotropic fluid sphere. Consequently, we can build physically reasonable matter models for almost any spherically symmetric spacetime.

  11. Bilayer Structure and Lipid Dynamics in a Model Stratum Corneum with Oleic Acid

    Energy Technology Data Exchange (ETDEWEB)

    Hoopes, Matthew I.; Noro, Massimo G.; Longo, Marjorie L.; Faller, Roland

    2011-03-31

    The stratum corneum is the uppermost layer of the skin and acts as a barrier to keep out contaminants and retain moisture. Understanding the molecular structure and behavior of this layer will provide guidance for optimizing its biological function. In this study we use a model mixture comprised of equimolar portions of ceramide NS (24:0), lignoceric acid, and cholesterol to model the effect of the addition of small amounts of oleic acid to the bilayer at 300 and 340 K. Five systems at each temperature have been simulated with concentrations between 0 and 0.1 mol % oleic acid. Our major finding is that subdiffusive behavior over the 200 ns time scale is evident in systems at 340 K, with cholesterol diffusion being enhanced with increased oleic acid. Importantly, cholesterol and other species diffuse faster when radial densities indicate nearest neighbors include more cholesterol. We also find that, with the addition of oleic acid, the bilayer midplane and interfacial densities are reduced and there is a 3% decrease in total thickness occurring mostly near the hydrophilic interface at 300 K with reduced overall density at 340 K. Increased interdigitation occurs independent of oleic acid with a temperature increase. Slight ordering of the long non-hydroxy fatty acid of the ceramide occurs near the hydrophilic interface as a function of the oleic acid concentration, but no significant impact on hydrogen bonding is seen in the chosen oleic acid concentrations.

  12. Modeling the current-voltage characteristics of bilayer polymer photovoltaic devices

    Science.gov (United States)

    Barker, J. A.; Ramsdale, C. M.; Greenham, N. C.

    2003-02-01

    We have developed a numerical model to predict the current-voltage curves of bilayer conjugated polymer photovoltaic devices. The model accounts for charge photogeneration, injection, drift, diffusion, and recombination, and includes the effect of space charge on the electric field within the device. Charge separation at the polymer-polymer interface leads to the formation of bound polaron pairs which may either recombine monomolecularly or be dissociated into free charges, and we develop expressions for the field dependence of the dissociation rate. We find that the short-circuit quantum efficiency is determined by the competition between polaron pair dissociation and recombination. The model shows a logarithmic dependence of the open-circuit voltage on the incident intensity, as seen experimentally. This additional intensity-dependent voltage arises from the field required to produce a drift current that balances the current due to diffusion of carriers away from the interface.

  13. Inflation in a viscous fluid model

    Energy Technology Data Exchange (ETDEWEB)

    Bamba, Kazuharu [Fukushima University, Division of Human Support System, Faculty of Symbiotic Systems Science, Fukushima (Japan); Odintsov, Sergei D. [Campus UAB, Carrer de Can Magrans, Institut de Ciencies de lEspai (IEEC-CSIC), Barcelona (Spain); Passeig Lluis Companys, Institucio Catalana de Recerca i Estudis Avancats (ICREA), Barcelona (Spain)

    2016-01-15

    We explore a fluid description of the inflationary universe. In particular, we investigate a fluid model in which the equation of state (EoS) for a fluid includes bulk viscosity. We find that the three observables of inflationary cosmology, i.e., the spectral index of the curvature perturbations, the tensor-to-scalar ratio of the density perturbations, and the running of the spectral index, can be consistent with the recent Planck results. We also reconstruct the explicit EoS for a fluid from the spectral index of the curvature perturbations compatible with the Planck analysis. In the reconstructed models of a fluid, the tensor-to-scalar ratio of the density perturbations can satisfy the constraints obtained from the Planck satellite. The running of the spectral index can explain the Planck data. In addition, it is demonstrated that in the reconstructed models of a fluid, the graceful exit from inflation can be realized. Moreover, we show that the singular inflation can occur in a fluid model. Furthermore, we show that a fluid description of inflation can be equivalent to the description of inflation in terms of scalar field theories. (orig.)

  14. Model of hybrid interfacial domain wall in ferromagnetic/antiferromagnetic bilayers

    Science.gov (United States)

    Zhang, Wen; Zhai, Ya; Lu, Mu; You, Biao; Zhai, Hong-Ru; Caroline, G. Morgan

    2015-04-01

    A general model of a hybrid interfacial domain wall (HIDW) in ferromagnetic/antiferromagnetic exchange biased bilayers is proposed, where an interfacial domain wall is allowed to extend into either the ferromagnetic or antiferromagnetic layer or across both. The proposition is based on our theoretical investigation on thickness and field dependences of ferromagnetic domain wall (FMDW) and antiferromagnetic domain wall (AFDW), respectively. Good match of the simulation to the hysteresis loops of a series of NiFe/FeMn exchange-biased bilayers confirms the existence of the HIDW, where the AFDW part is found to preferentially occupy the entire antiferromagnetic layer while the FMDW shrinks with the increased magnetic field as expected. The observed asymmetry between the ascending and descending branches of the hysteresis loop is explained naturally as a consequence of different partition ratios between AFDW and FMDW. Project supported by the National Basic Research Program, China (Grant No. 2010CB923404), the National Natural Science Foundation for Young Scientists of China (Grant No. 61306121), and the China Postdoctoral Science Foundation (Grant No. 2013M541580).

  15. Fiber bundle model under fluid pressure

    Science.gov (United States)

    Amitrano, David; Girard, Lucas

    2016-03-01

    Internal fluid pressure often plays an important role in the rupture of brittle materials. This is a major concern for many engineering applications and for natural hazards. More specifically, the mechanisms through which fluid pressure, applied at a microscale, can enhance the failure at a macroscale and accelerate damage dynamics leading to failure remains unclear. Here we revisit the fiber bundle model by accounting for the effect of fluid under pressure that contributes to the global load supported by the fiber bundle. Fluid pressure is applied on the broken fibers, following Biot's theory. The statistical properties of damage avalanches and their evolution toward macrofailure are analyzed for a wide range of fluid pressures. The macroscopic strength of the new model appears to be strongly controlled by the action of the fluid, particularly when the fluid pressure becomes comparable with the fiber strength. The behavior remains consistent with continuous transition, i.e., second order, including for large pressure. The main change concerns the damage acceleration toward the failure that is well modeled by the concept of sweeping of an instability. When pressure is increased, the exponent β characterizing the power-law distribution avalanche sizes significantly decreases and the exponent γ characterizing the cutoff divergence when failure is approached significantly increases. This proves that fluid pressure plays a key role in failure process acting as destabilization factor. This indicates that macrofailure occurs more readily under fluid pressure, with a behavior that becomes progressively unstable as fluid pressure increases. This may have considerable consequences on our ability to forecast failure when fluid pressure is acting.

  16. Hidden Symmetry of a Fluid Dynamical Model

    CERN Document Server

    Neves, C

    2001-01-01

    A connection between solutions of the relativistic d-brane system in (d+1) dimensions with the solutions of a Galileo invariant fluid in d-dimensions is by now well established. However, the physical nature of the light-cone gauge description of a relativistic membrane changes after the reduction to the fluid dynamical model since the gauge symmetry is lost. In this work we argue that the original gauge symmetry present in a relativistic d-brane system can be recovered after the reduction process to a d-dimensional fluid model. To this end we propose, without introducing Wess-Zumino fields, a gauge invariant theory of isentropic fluid dynamics and show that this symmetry corresponds to the invariance under local translation of the velocity potential in the fluid dynamics picture. We show that different but equivalent choices of the sympletic sector lead to distinct representations of the embedded gauge algebra.

  17. Computational fluid dynamics modeling in yarn engineering

    CSIR Research Space (South Africa)

    Patanaik, A

    2011-07-01

    Full Text Available This chapter deals with the application of computational fluid dynamics (CFD) modeling in reducing yarn hairiness during the ring spinning process and thereby “engineering” yarn with desired properties. Hairiness significantly affects the appearance...

  18. A mesoscopic model for binary fluids

    CERN Document Server

    Echeverria, C; Alvarez-Llamoza, O; Orozco-Guillén, E E; Morales, M; Cosenza, M G

    2016-01-01

    We propose a model to study symmetric binary fluids, based in the mesoscopic molecular simulation technique known as multiparticle collision, where space and state variables are continuous while time is discrete. We include a repulsion rule to simulate segregation processes that does not require the calculation of the interaction forces between particles, thus allowing the description of binary fluids at a mesoscopic scale. The model is conceptually simple, computationally efficient, maintains Galilean invariance, and conserves the mass and the energy in the system at micro and macro scales; while momentum is conserved globally. For a wide range of temperatures and densities, the model yields results in good agreement with the known properties of binary fluids, such as density profile, width of the interface, phase separation and phase growth. We also apply the model to study binary fluids in crowded environments with consistent results.

  19. An entrainment model for fluid mud

    NARCIS (Netherlands)

    Kranenburg, C.

    1993-01-01

    An entrainment model for fluid mud is derived by integrating the equation for turbulent kinetic energy across the mixed layer and introducing some modelling assumptions. The resulting entrainment model is similar to models of mixed-layer deepening in lakes and reservoirs, but in addition accounts fo

  20. An entrainment model for fluid mud

    NARCIS (Netherlands)

    Kranenburg, C.

    1993-01-01

    An entrainment model for fluid mud is derived by integrating the equation for turbulent kinetic energy across the mixed layer and introducing some modelling assumptions. The resulting entrainment model is similar to models of mixed-layer deepening in lakes and reservoirs, but in addition accounts fo

  1. Variational study of the quantum phase transition in the bilayer Heisenberg model with bosonic RVB wavefunction.

    Science.gov (United States)

    Liao, Haijun; Li, Tao

    2011-11-30

    We study the ground state phase diagram of the bilayer Heisenberg model on a square lattice with a bosonic resonating valence bond (RVB) wavefunction. The wavefunction has the form of a Gutzwiller projected Schwinger boson mean-field ground state and involves two variational parameters. We find the wavefunction provides an accurate description of the system on both sides of the quantum phase transition. In particular, through the analysis of the spin structure factor, ground state fidelity susceptibility and the Binder moment ratio Q(2), a continuous transition from the antiferromagnetic ordered state to the quantum disordered state is found at the critical coupling of α(c) = J(⊥)/J(∥) ≈ 2.62, in good agreement with the result of quantum Monte Carlo simulation. The critical exponent estimated from the finite size scaling analysis (1/ν ≈ 1.4) is consistent with that of the classical 3D Heisenberg universality class.

  2. The valley filter efficiency of monolayer graphene and bilayer graphene line defect model

    Science.gov (United States)

    Cheng, Shu-guang; Zhou, Jiaojiao; Jiang, Hua; Sun, Qing-Feng

    2016-10-01

    In addition to electron charge and spin, novel materials host another degree of freedom, the valley. For a junction composed of valley filter sandwiched by two normal terminals, we focus on the valley efficiency under disorder with two valley filter models based on monolayer and bilayer graphene. Applying the transfer matrix method, valley resolved transmission coefficients are obtained. We find that: (i) under weak disorder, when the line defect length is over about 15 {nm}, it functions as a perfect channel (quantized conductance) and valley filter (totally polarized); (ii) in the diffusive regime, combination effects of backscattering and bulk states assisted intervalley transmission enhance the conductance and suppress the valley polarization; (iii) for very long line defect, though the conductance is small, polarization is indifferent to length. Under perpendicular magnetics field, the characters of charge and valley transport are only slightly affected. Finally we discuss the efficiency of transport valley polarized current in a hybrid system.

  3. An Electroluminescence Delay Time Model of Bilayer Organic Light-Emitting Diodes

    Institute of Scientific and Technical Information of China (English)

    LI Hong-Jian; ZHU Ru-Hui; LI Xue-Yong; YANG Bing-Chu

    2007-01-01

    @@ Based on the mechanism of injection, transport and recombination of the charge carriers, we develop a model to calculate the delay time of electroluminescence (EL) from bilayer organic light emitting diodes. The effect of injection, transport and recombination processes on the EL delay time is discussed, and the relationship between the internal interface barrier and the recombination time is revealed. The results show that the EL delay time is dominated by the recombination process at lower applied voltage and by the transport process at higher applied voltage. When the internal interface barrier varies from 0.15 eV to 0.3 eV, the recombination delay time increases rapidly, while the internal interface barrier exceeds about 0.3eV, the dependence of the recombination delay time on applied voltage is almost undiversified, which may serve as a guideline for designing of a high-speed EL response device.

  4. Analytical model for the photocurrent-voltage characteristics of bilayer MEH-PPV/TiO2 photovoltaic devices.

    Science.gov (United States)

    Chen, Chong; Wu, Fan; Geng, Hongwei; Shen, Wei; Wang, Mingtai

    2011-04-19

    The photocurrent in bilayer polymer photovoltaic cells is dominated by the exciton dissociation efficiency at donor/acceptor interface. An analytical model is developed for the photocurrent-voltage characteristics of the bilayer polymer/TiO2 photovoltaic cells. The model gives an analytical expression for the exciton dissociation efficiency at the interface, and explains the dependence of the photocurrent of the devices on the internal electric field, the polymer and TiO2 layer thicknesses. Bilayer polymer/TiO2 cells consisting of poly[2-methoxy-5-(2-ethylhexyloxy)-1,4-phenylenevinylene] (MEH-PPV) and TiO2, with different thicknesses of the polymer and TiO2 films, were prepared for experimental purposes. The experimental results for the prepared bilayer MEH-PPV/TiO2 cells under different conditions are satisfactorily fitted to the model. Results show that increasing TiO2 or the polymer layer in thickness will reduce the exciton dissociation efficiency in the device and further the photocurrent. It is found that the photocurrent is determined by the competition between the exciton dissociation and charge recombination at the donor/acceptor interface, and the increase in photocurrent under a higher incident light intensity is due to the increased exciton density rather than the increase in the exciton dissociation efficiency.

  5. On the application of the MARTINI coarse-grained model to immersion of a protein in a phospholipid bilayer

    Energy Technology Data Exchange (ETDEWEB)

    Mustafa, Ghulam, E-mail: Ghulam.Mustafa@h-its.org, E-mail: rebecca.wade@h-its.org; Nandekar, Prajwal P.; Yu, Xiaofeng [Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), Schloß-Wolfsbrunnenweg 35, 69118 Heidelberg (Germany); Wade, Rebecca C., E-mail: Ghulam.Mustafa@h-its.org, E-mail: rebecca.wade@h-its.org [Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies (HITS), Schloß-Wolfsbrunnenweg 35, 69118 Heidelberg (Germany); Zentrum für Molekulare Biologie der Universität Heidelberg, DKFZ-ZMBH Alliance, INF 282, 69120 Heidelberg (Germany); Interdisciplinary Center for Scientific Computing (IWR), Heidelberg University, INF 368, 69120 Heidelberg (Germany)

    2015-12-28

    An important step in the simulation of a membrane protein in a phospholipid bilayer is the correct immersion of the protein in the bilayer. Crystal structures are determined without the bilayer. Particularly for proteins with monotopic domains, it can be unclear how deeply and in which orientation the protein is being inserted in the membrane. We have previously developed a procedure combining coarse-grain (CG) with all-atom (AA) molecular dynamics (MD) simulations to insert and simulate a cytochrome P450 (CYP) possessing an N-terminal transmembrane helix connected by a flexible linker region to a globular domain that dips into the membrane. The CG simulations provide a computationally efficient means to explore different orientations and conformations of the CYP in the membrane. Converged configurations obtained in the CG simulations are then refined in AA simulations. Here, we tested different variants of the MARTINI CG model, differing in the water model, the treatment of long-range non-bonded interactions, and the implementation (GROMACS 4.5.5 vs 5.0.4), for this purpose. We examined the behavior of the models for simulating a 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) bilayer in water and for the immersion of CYP3A4 in a POPC bilayer, and compared the CG-MD results with the previously reported experimental and simulation results. We also tested the methodology on a set of four other CYPs. Finally, we propose an optimized protocol for modeling such protein-membrane systems that provides the most plausible configurations and is computationally efficient; this incorporates the standard non-polar water model and the GROMACS 5.0.4 implementation with a reaction field treatment of long-range interactions.

  6. A microsphere suspension model of metamaterial fluids

    Directory of Open Access Journals (Sweden)

    Qian Duan

    2017-05-01

    Full Text Available Drawing an analogy to the liquid phase of natural materials, we theoretically propose a microsphere suspension model to realize a metamaterial fluid with artificial electromagnetic indexes. By immersing high-ε, micrometer-sized dielectric spheres in a low-ε insulating oil, the structured fluid exhibits liquid-like properties from dispersing phase as well as the isotropic negative electromagnetic parameters caused by Mie resonances from dispersed microspheres. The work presented here will benefit the development of structured fluids toward metamaterials.

  7. Sandwich beam model for free vibration analysis of bilayer graphene nanoribbons with interlayer shear effect

    Science.gov (United States)

    Nazemnezhad, Reza; Shokrollahi, Hassan; Hosseini-Hashemi, Shahrokh

    2014-05-01

    In this study, sandwich beam model (SM) is proposed for free vibration analysis of bilayer graphene nanoribbons (BLGNRs) with interlayer shear effect. This model also takes into account the intralayer (in-plane) stretch of graphene nanoribbons. The molecular dynamics (MD) simulations using the software LAMMPS and Adaptive Intermolecular Reactive Empirical Bond Order (AIREBO) potential are done to validate the accuracy of the sandwich model results. The MD simulation results include the two first frequencies of cantilever BLGNRs with different lengths and two interlayer shear moduli, i.e., 0.25 and 4.6 GPa. These two interlayer shear moduli, 0.25 and 4.6 GPa, can be obtained by sliding a small flake of graphene on a large graphene substrate when the parameter of E_LJ term in AIREBO potential, epsilon_CC, is set to be 2.84 and 45.44 meV, respectively. The SM results for a wide range of bending rigidity values show that the proposed model, i.e., the SM, predicts much better than the previous beam model in which the intralayer stretch is ignored. In addition, it is observed that the model can properly predict the natural frequencies of BLGNRs for various values of the bending rigidity and the interlayer shear modulus.

  8. Sandwich beam model for free vibration analysis of bilayer graphene nanoribbons with interlayer shear effect

    Energy Technology Data Exchange (ETDEWEB)

    Nazemnezhad, Reza, E-mail: rnazemnezhad@iust.ac.ir, E-mail: rnazemnezhad@du.ac.ir [School of Mechanical Engineering, Iran University of Science and Technology, Narmak, Tehran (Iran, Islamic Republic of); Shokrollahi, Hassan [School of Mechanical Engineering, Sharif University of Technology, Tehran (Iran, Islamic Republic of); Hosseini-Hashemi, Shahrokh [School of Mechanical Engineering, Iran University of Science and Technology, Narmak, Tehran (Iran, Islamic Republic of); Center of Excellence in Railway Transportation, Iran University of Science and Technology, Narmak, Tehran (Iran, Islamic Republic of)

    2014-05-07

    In this study, sandwich beam model (SM) is proposed for free vibration analysis of bilayer graphene nanoribbons (BLGNRs) with interlayer shear effect. This model also takes into account the intralayer (in-plane) stretch of graphene nanoribbons. The molecular dynamics (MD) simulations using the software LAMMPS and Adaptive Intermolecular Reactive Empirical Bond Order (AIREBO) potential are done to validate the accuracy of the sandwich model results. The MD simulation results include the two first frequencies of cantilever BLGNRs with different lengths and two interlayer shear moduli, i.e., 0.25 and 4.6 GPa. These two interlayer shear moduli, 0.25 and 4.6 GPa, can be obtained by sliding a small flake of graphene on a large graphene substrate when the parameter of E-LJ term in AIREBO potential, epsilon-CC, is set to be 2.84 and 45.44 meV, respectively. The SM results for a wide range of bending rigidity values show that the proposed model, i.e., the SM, predicts much better than the previous beam model in which the intralayer stretch is ignored. In addition, it is observed that the model can properly predict the natural frequencies of BLGNRs for various values of the bending rigidity and the interlayer shear modulus.

  9. A new model for shallow elastic fluids

    CERN Document Server

    Bouchut, François

    2013-01-01

    We propose a new reduced model for gravity-driven free-surface flows of shallow elastic fluids. It is obtained by an asymptotic expansion of the upper-convected Maxwell model for elastic fluids. The viscosity is assumed small (of order epsilon, the aspect ratio of the thin layer of fluid), but the relaxation time is kept finite. Additionally to the classical layer depth and velocity in shallow models, our system describes also the evolution of two scalar stresses. It has an intrinsic energy equation. The mathematical properties of the model are established, an important feature being the non-convexity of the physically relevant energy with respect to conservative variables, but the convexity with respect to the physically relevant pseudo-conservative variables. Numerical illustrations are given, based on a suitable well-balanced finite-volume discretization involving an approximate Riemann solver.

  10. Interfacial Fluid Mechanics A Mathematical Modeling Approach

    CERN Document Server

    Ajaev, Vladimir S

    2012-01-01

    Interfacial Fluid Mechanics: A Mathematical Modeling Approach provides an introduction to mathematical models of viscous flow used in rapidly developing fields of microfluidics and microscale heat transfer. The basic physical effects are first introduced in the context of simple configurations and their relative importance in typical microscale applications is discussed. Then,several configurations of importance to microfluidics, most notably thin films/droplets on substrates and confined bubbles, are discussed in detail.  Topics from current research on electrokinetic phenomena, liquid flow near structured solid surfaces, evaporation/condensation, and surfactant phenomena are discussed in the later chapters. This book also:  Discusses mathematical models in the context of actual applications such as electrowetting Includes unique material on fluid flow near structured surfaces and phase change phenomena Shows readers how to solve modeling problems related to microscale multiphase flows Interfacial Fluid Me...

  11. A bilayer-couple model of bacterial outer membrane vesicle biogenesis.

    Science.gov (United States)

    Schertzer, Jeffrey W; Whiteley, Marvin

    2012-01-01

    Gram-negative bacteria naturally produce outer membrane vesicles (OMVs) that arise through bulging and pinching off of the outer membrane. OMVs have several biological functions for bacteria, most notably as trafficking vehicles for toxins, antimicrobials, and signaling molecules. While their biological roles are now appreciated, the mechanism of OMV formation has not been fully elucidated. We recently demonstrated that the signaling molecule 2-heptyl-3-hydroxy-4-quinolone (PQS) is required for OMV biogenesis in P. aeruginosa. We hypothesized that PQS stimulates OMV formation through direct interaction with the outer leaflet of the outer membrane. To test this hypothesis, we employed a red blood cell (RBC) model that has been used extensively to study small-molecule-membrane interactions. Our results revealed that addition of PQS to RBCs induced membrane curvature, resulting in the formation of membrane spicules (spikes), consistent with small molecules that are inserted stably into the outer leaflet of the membrane. Radiotracer experiments demonstrated that sufficient PQS was inserted into the membrane to account for this curvature and that curvature induction was specific to PQS structure. These data suggest that a low rate of interleaflet flip-flop forces PQS to accumulate in and expand the outer leaflet relative to the inner leaflet, thus inducing membrane curvature. In support of PQS-mediated outer leaflet expansion, the PQS effect was antagonized by chlorpromazine, a molecule known to be preferentially inserted into the inner leaflet. Based on these data, we propose a bilayer-couple model to describe P. aeruginosa OMV biogenesis and suggest that this is a general mechanism for bacterial OMV formation. Despite the ubiquity and importance of outer membrane vesicle (OMV) production in Gram-negative bacteria, the molecular details of OMV biogenesis are not fully understood. Early experiments showed that 2-heptyl-3-hydroxy-4-quinolone (PQS) induces OMV formation

  12. A study of the bilayer Bethe lattice for spin-32 Ising model

    Energy Technology Data Exchange (ETDEWEB)

    Albayrak, Erhan [Department of Physics, Erciyes University, 38039 Kayseri (Turkey)]. E-mail: albayrak@erciyes.edu.tr; Yilmaz, Saban [Department of Physics, Erciyes University, 38039 Kayseri (Turkey); Akkaya, Seyma [Department of Physics, Erciyes University, 38039 Kayseri (Turkey)

    2007-03-15

    The spin-32 Ising model on the bilayer Bethe lattice is studied in terms of the exact recursion relations with the intralayer bilinear interactions J{sub 11} and J{sub 22} of the two layers with ferromagnetic coupling and interlayer bilinear interaction J{sub 12} between the layers with ferromagnetic or antiferromagnetic coupling. We first have obtained the ground state configurations of the model on the (J{sub 22}/vertical barJ{sub 11}vertical bar,J{sub 12}/qvertical barJ{sub 11}vertical bar) planes for J{sub 11}<0 and J{sub 11}>0. Then the thermal behaviors of the order-parameters, the total and staggered magnetizations of the two layers and also the spin-spin correlation function between the nearest-neighbor spins of the adjacent layers, are studied to obtain the phase diagrams of the model on the (kT/J{sub 11},J{sub 12}/J{sub 11}) plane for given values of J{sub 22}/J{sub 11} and the coordination number q. As a result, a few types of the critical temperatures of the model are obtained.

  13. 2D lattice model of a lipid bilayer: Microscopic derivation and thermodynamic exploration

    Science.gov (United States)

    Hakobyan, Davit; Heuer, Andreas

    2017-02-01

    Based on all-atom Molecular Dynamics (MD) simulations of a lipid bilayer we present a systematic mapping on a 2D lattice model. Keeping the lipid type and the chain order parameter as key variables we derive a free energy functional, containing the enthalpic interaction of adjacent lipids as well as the tail entropy. The functional form of both functions is explicitly determined for saturated and polyunsaturated lipids. By studying the lattice model via Monte Carlo simulations it is possible to reproduce the temperature dependence of the distribution of order parameters of the pure lipids, including the prediction of the gel transition. Furthermore, application to a mixture of saturated and polyunsaturated lipids yields the correct phase separation behavior at lower temperatures with a simulation time reduced by approximately 7 orders of magnitude as compared to the corresponding MD simulations. Even the time-dependence of the de-mixing is reproduced on a semi-quantitative level. Due to the generality of the approach we envisage a large number of further applications, ranging from modeling larger sets of lipids, sterols, and solvent proteins to predicting nucleation barriers for the melting of lipids. Particularly, from the properties of the 2D lattice model one can directly read off the enthalpy and entropy change of the 1,2-dipalmitoyl-sn-glycero-3-phosphocholine gel-to-liquid transition in excellent agreement with experimental and MD results.

  14. A generic tight-binding model for monolayer, bilayer and bulk MoS2

    Directory of Open Access Journals (Sweden)

    Ferdows Zahid

    2013-05-01

    Full Text Available Molybdenum disulfide (MoS2 is a layered semiconductor which has become very important recently as an emerging electronic device material. Being an intrinsic semiconductor the two-dimensional MoS2 has major advantages as the channel material in field-effect transistors. In this work we determine the electronic structures of MoS2 with the highly accurate screened hybrid functional within the density functional theory (DFT including the spin-orbit coupling. Using the DFT electronic structures as target, we have developed a single generic tight-binding (TB model that accurately produces the electronic structures for three different forms of MoS2 - bulk, bilayer and monolayer. Our TB model is based on the Slater-Koster method with non-orthogonal sp3d5 orbitals, nearest-neighbor interactions and spin-orbit coupling. The TB model is useful for atomistic modeling of quantum transport in MoS2 based electronic devices.

  15. Stokesian jellyfish: Viscous locomotion of bilayer vesicles

    CERN Document Server

    Evans, Arthur A; Lauga, Eric

    2010-01-01

    Motivated by recent advances in vesicle engineering, we consider theoretically the locomotion of shape-changing bilayer vesicles at low Reynolds number. By modulating their volume and membrane composition, the vesicles can be made to change shape quasi-statically in thermal equilibrium. When the control parameters are tuned appropriately to yield periodic shape changes which are not time-reversible, the result is a net swimming motion over one cycle of shape deformation. For two classical vesicle models (spontaneous curvature and bilayer coupling), we determine numerically the sequence of vesicle shapes through an enthalpy minimization, as well as the fluid-body interactions by solving a boundary integral formulation of the Stokes equations. For both models, net locomotion can be obtained either by continuously modulating fore-aft asymmetric vesicle shapes, or by crossing a continuous shape-transition region and alternating between fore-aft asymmetric and fore-aft symmetric shapes. The obtained hydrodynamic e...

  16. Normal mode gating motions of a ligand-gated ion channel persist in a fully hydrated lipid bilayer model.

    Science.gov (United States)

    Bertaccini, Edward J; Trudell, James R; Lindahl, Erik

    2010-08-18

    We have previously used molecular modeling and normal-mode analyses combined with experimental data to visualize a plausible model of a transmembrane ligand-gated ion channel. We also postulated how the gating motion of the channel may be affected by the presence of various ligands, especially anesthetics. As is typical for normal-mode analyses, those studies were performed in vacuo to reduce the computational complexity of the problem. While such calculations constitute an efficient way to model the large scale structural flexibility of transmembrane proteins, they can be criticized for neglecting the effects of an explicit phospholipid bilayer or hydrated environment. Here, we show the successful calculation of normal-mode motions for our model of a glycine α-1 receptor, now suspended in a fully hydrated lipid bilayer. Despite the almost uniform atomic density, the introduction of water and lipid does not grossly distort the overall gating motion. Normal-mode analysis revealed that even a fully immersed glycine α-1 receptor continues to demonstrate an iris-like channel gating motion as a low-frequency, high-amplitude natural harmonic vibration consistent with channel gating. Furthermore, the introduction of periodic boundary conditions allows the examination of simultaneous harmonic vibrations of lipid in synchrony with the protein gating motions that are compatible with reasonable lipid bilayer perturbations. While these perturbations tend to influence the overall protein motion, this work provides continued support for the iris-like motion model that characterizes gating within the family of ligand-gated ion channels.

  17. Fluid and hybrid models for streamers

    Science.gov (United States)

    Bonaventura, Zdeněk

    2016-09-01

    Streamers are contracted ionizing waves with self-generated field enhancement that propagate into a low-ionized medium exposed to high electric field leaving filamentary trails of plasma behind. The widely used model to study streamer dynamics is based on drift-diffusion equations for electrons and ions, assuming local field approximation, coupled with Poisson's equation. For problems where presence of energetic electrons become important a fluid approach needs to be extended by a particle model, accompanied also with Monte Carlo Collision technique, that takes care of motion of these electrons. A combined fluid-particle approach is used to study an influence of surface emission processes on a fast-pulsed dielectric barrier discharge in air at atmospheric pressure. It is found that fluid-only model predicts substantially faster reignition dynamics compared to coupled fluid-particle model. Furthermore, a hybrid model can be created in which the population of electrons is divided in the energy space into two distinct groups: (1) low energy `bulk' electrons that are treated with fluid model, and (2) high energy `beam' electrons, followed as particles. The hybrid model is then capable not only to deal with streamer discharges in laboratory conditions, but also allows us to study electron acceleration in streamer zone of lighting leaders. There, the production of fast electrons from streamers is investigated, since these (runaway) electrons act as seeds for the relativistic runaway electron avalanche (RREA) mechanism, important for high-energy atmospheric physics phenomena. Results suggest that high energy electrons effect the streamer propagation, namely the velocity, the peak electric field, and thus also the production rate of runaway electrons. This work has been supported by the Czech Science Foundation research project 15-04023S.

  18. Syringotoxin pore formation and inactivation in human red blood cell and model bilayer lipid membranes.

    Science.gov (United States)

    Szabó, Zsófia; Gróf, Pál; Schagina, Ludmila V; Gurnev, Philip A; Takemoto, Jon Y; Mátyus, Edit; Blaskó, Katalin

    2002-12-23

    The effect of syringotoxin (ST), a member of the cyclic lipodepsipeptides family (CLPs) produced by Pseudomonas syringae pv. syringae on the membrane permeability of human red blood cells (RBCs) and model bilayer lipid membranes (BLMs) was studied and compared to that of two recently investigated CLPs, syringomycin E (SRE) and syringopeptin 22A (SP22A) [Biochim. Biophys. Acta 1466 (2000) 79 and Bioelectrochemistry 52 (2000) 161]. The permeability-increasing effect of ST on RBCs was the least among the three CLPs. A time-dependent ST pore inactivation was observed on RBCs at 20 and 37 degrees C but not at 8 degrees C. From the kinetic model worked out parameters as permeability coefficient of RBC membrane for 86Rb(+) and pores mean lifetime were calculated. A shorter pores mean lifetime was calculated at 37 degrees C then at 20 degrees C, which gave us an explanation for the unusual slower rate of tracer efflux measured at 37 degrees C then that at 20 degrees C. The results obtained on BLM showed that the pore inactivation was due to a decrease in the number of pores but not to a change of their dwell time or conductance.

  19. Investigating models for associating fluids using spectroscopy

    DEFF Research Database (Denmark)

    von Solms, Nicolas; Michelsen, Michael Locht; Passos, Claudia Pereira;

    2005-01-01

    Two equations of state (PC-SAFT and CPA) are used to predict the monomer fraction of pure associating fluids. The models each require five pure-component parameters usually obtained by fitting to experimental liquid density and vapor pressure data. Here we also incorporate monomer fractions...

  20. Molecular Dynamics of a Water-Lipid Bilayer Interface

    Science.gov (United States)

    Wilson, Michael A.; Pohorille, Andrew

    1994-01-01

    We present results of molecular dynamics simulations of a glycerol 1-monooleate bilayer in water. The total length of analyzed trajectories is 5ns. The calculated width of the bilayer agrees well with the experimentally measured value. The interior of the membrane is in a highly disordered fluid state. Atomic density profile, orientational and conformational distribution functions, and order parameters indicate that disorder increases toward the center of the bilayer. Analysis of out-of-plane thermal fluctuations of the bilayer surfaces occurring at the time scale of the present calculations reveals that the distribution of modes agrees with predictions of the capillary wave model. Fluctuations of both bilayer surfaces are uncorrelated, yielding Gaussian distribution of instantaneous widths of the membrane. Fluctuations of the width produce transient thinning defects in the bilayer which occasionally span almost half of the membrane. The leading mechanism of these fluctuations is the orientational and conformational motion of head groups rather than vertical motion of the whole molecules. Water considerably penetrates the head group region of the bilayer but not its hydrocarbon core. The total net excess dipole moment of the interfacial water points toward the aqueous phase, but the water polarization profile is non-monotonic. Both water and head groups significantly contribute to the surface potential across the interface. The calculated sign of the surface potential is in agreement with that from experimental measurements, but the value is markedly overestimated. The structural and electrical properties of the water-bilayer system are discussed in relation to membrane functions, in particular transport of ions and nonelectrolytes across membranes.

  1. Molecular Dynamics of a Water-Lipid Bilayer Interface

    Science.gov (United States)

    Wilson, Michael A.; Pohorille, Andrew

    1994-01-01

    We present results of molecular dynamics simulations of a glycerol 1-monooleate bilayer in water. The total length of analyzed trajectories is 5ns. The calculated width of the bilayer agrees well with the experimentally measured value. The interior of the membrane is in a highly disordered fluid state. Atomic density profile, orientational and conformational distribution functions, and order parameters indicate that disorder increases toward the center of the bilayer. Analysis of out-of-plane thermal fluctuations of the bilayer surfaces occurring at the time scale of the present calculations reveals that the distribution of modes agrees with predictions of the capillary wave model. Fluctuations of both bilayer surfaces are uncorrelated, yielding Gaussian distribution of instantaneous widths of the membrane. Fluctuations of the width produce transient thinning defects in the bilayer which occasionally span almost half of the membrane. The leading mechanism of these fluctuations is the orientational and conformational motion of head groups rather than vertical motion of the whole molecules. Water considerably penetrates the head group region of the bilayer but not its hydrocarbon core. The total net excess dipole moment of the interfacial water points toward the aqueous phase, but the water polarization profile is non-monotonic. Both water and head groups significantly contribute to the surface potential across the interface. The calculated sign of the surface potential is in agreement with that from experimental measurements, but the value is markedly overestimated. The structural and electrical properties of the water-bilayer system are discussed in relation to membrane functions, in particular transport of ions and nonelectrolytes across membranes.

  2. Geochemical modeling of fluid-fluid and fluid-mineral interactions during geological CO2 storage

    Science.gov (United States)

    Zhu, C.; Ji, X.; Lu, P.

    2013-12-01

    The long time required for effective CO2 storage makes geochemical modeling an indispensable tool for CCUS. One area of geochemical modeling research that is in urgent need is impurities in CO2 streams. Permitting impurities, such as H2S, in CO2 streams can lead to potential capital and energy savings. However, predicting the consequences of co-injection of CO2 and impurities into geological formations requires the understanding of the phase equilibrium and fluid-fluid interactions. To meet this need, we developed a statistical associating fluid theory (SAFT)-based equation of state (EOS) for the H2S-CO2-H2O-NaCl system at 373.15 dew pressures decrease with increasing H2S content, while the mass density increases at low pressures and decreases at high pressures. Furthermore, the EoS can be incorporated into reservoir simulators so that the dynamic development of mixed fluid plumes in the reservoir can be simulated. Accurate modeling of fluid-mineral interactions must confront unresolved uncertainties of silicate dissolution - precipitation reaction kinetics. Most prominent among these uncertainties is the well-known lab-field apparent discrepancy in dissolution rates. Although reactive transport models that simulate the interactions between reservoir rocks and brine, and their attendant effects on porosity and permeability changes, have proliferated, whether these results have acceptable uncertainties are unknown. We have conducted a series of batch experiments at elevated temperatures and numerical simulations of coupled dissolution and precipitation reactions. The results show that taking into account of reaction coupling is able to reduce the gap between the field and lab rates by about two orders of magnitude at elevated temperatures of 200-300 oC. Currently, we are using Si isotopes as a new tool to unravel the coupled reactions in ambient temperature laboratory experiments. These new experimental data, together with coupled reactive mass transport modeling

  3. Molecular Modeling of Solid Fluid Phase Behavior

    Energy Technology Data Exchange (ETDEWEB)

    Peter A. Monson

    2007-12-20

    This report gives a summary of the achievements under DOE contract No. DOE/ER/14150 during the period September 1, 1990 to December 31, 2007. This project was concerned with the molecular modeling of solid-fluid equilibrium. The focus was on understanding how solid-fluid and solid-solid phase behavior are related to molecular structure, and the research program made a seminal contribution in this area. The project led to 34 journal articles, including a comprehensive review article published in Advances in Chemical Physics. The DOE funding supported the work of 5 Ph.D. students, 2 M.S. students and 5 postdoctoral researchers.

  4. Dynamical structure factors and excitation modes of the bilayer Heisenberg model

    Science.gov (United States)

    Lohöfer, M.; Coletta, T.; Joshi, D. G.; Assaad, F. F.; Vojta, M.; Wessel, S.; Mila, F.

    2015-12-01

    Using quantum Monte Carlo simulations along with higher-order spin-wave theory, bond-operator and strong-coupling expansions, we analyze the dynamical spin structure factor of the spin-half Heisenberg model on the square-lattice bilayer. We identify distinct contributions from the low-energy Goldstone modes in the magnetically ordered phase and the gapped triplon modes in the quantum disordered phase. In the antisymmetric (with respect to layer inversion) channel, the dynamical spin structure factor exhibits a continuous evolution of spectral features across the quantum phase transition, connecting the two types of modes. Instead, in the symmetric channel, we find a depletion of the spectral weight when moving from the ordered to the disordered phase. While the dynamical spin structure factor does not exhibit a well-defined distinct contribution from the amplitude (or Higgs) mode in the ordered phase, we identify an only marginally damped amplitude mode in the dynamical singlet structure factor, obtained from interlayer bond correlations, in the vicinity of the quantum critical point. These findings provide quantitative information in direct relation to possible neutron or light scattering experiments in a fundamental two-dimensional quantum-critical spin system.

  5. Thick brane world model from perfect fluid

    CERN Document Server

    Ivashchuk, V D

    2001-01-01

    A (1 + d)-dimensional thick "brane world" model with varying Lambda-term is considered. The model is generalized to the case of a chain of Ricci-flat internal spaces when the matter source is an anisotropic perfect fluid. The "horizontal" part of potential is obtained in the Newtonian approximation. In the multitemporal case (with a Lambda-term) a set of equations for potentials is presented.

  6. Tracer technology modeling the flow of fluids

    CERN Document Server

    Levenspiel, Octave

    2012-01-01

    A vessel’s behavior as a heat exchanger, absorber, reactor, or other process unit is dependent upon how fluid flows through the vessel.  In early engineering, the designer would assume either plug flow or mixed flow of the fluid through the vessel.  However, these assumptions were oftentimes inaccurate, sometimes being off by a volume factor of 100 or more.  The result of this unreliable figure produced ineffective products in multiple reaction systems.   Written by a pioneering researcher in the field of chemical engineering, the tracer method was introduced to provide more accurate flow data.  First, the tracer method measured the actual flow of fluid through a vessel.  Second, it developed a suitable model to represent the flow in question.  Such models are used to follow the flow of fluid in chemical reactors and other process units, like in rivers and streams, or solid and porous structures.  In medicine, the tracer method is used to study the flow of chemicals—harmful  and harmless—in the...

  7. Molecular dynamics of leucine and dopamine transporter proteins in a model cell membrane lipid bilayer.

    Science.gov (United States)

    Gedeon, Patrick C; Indarte, Martín; Surratt, Christopher K; Madura, Jeffry D

    2010-03-01

    The dopamine transporter (DAT) operates via facilitated diffusion, harnessing an inward Na(+) gradient to drive dopamine from the extracellular synaptic cleft to the neuron interior. The DAT is relevant to central nervous system disorders such as Parkinson disease and attention-deficit hyperactivity disorder and is the primary site of action for the abused psychostimulants cocaine and amphetamines. Crystallization of a DAT homolog, the bacterial leucine transporter LeuT, provided the first reliable 3-D DAT template. Here, the LeuT crystal structure and the DAT molecular model have been combined with their respective substrates, leucine and dopamine, in lipid bilayer molecular dynamics simulations toward tracking substrate movement along the protein's substrate/ion permeation pathway. Specifically, movement of residue pairs that comprise the "external gate" was followed as a function of substrate presence. The transmembrane (TM) 1 arginine-TM 10 aspartate strut formed less readily in DAT compared with LeuT, with or without substrate present. For LeuT but not DAT, the addition of substrate enhanced the chances of forming the TM 1-10 bridge. Also, movement of the fourth extracellular loop EL-4 in the presence of substrate was more pronounced for DAT, the EL-4 unwinding to a degree. The overall similarity between the LeuT and DAT molecular dynamics simulations indicated that LeuT was a legitimate model to guide DAT structure-function predictions. There were, nevertheless, differences significant enough to allow for DAT-unique insights, which may include how cocaine, methylphenidate (Ritalin, NIDA Drug Supply, Rockville, MD), and other DAT blockers are not recognized as substrates even though they can access the primary substrate binding pocket. Proteins 2010. (c) 2009 Wiley-Liss, Inc.

  8. Erosion of a model geophysical fluid

    Science.gov (United States)

    Luu, Li-Hua; Philippe, Pierre; Chambon, Guillaume

    2014-05-01

    A specificity of natural flows such as debris flows, landslides or snow avalanches is that, mostly, the material forming the static bed has mechanical properties similar to those of the flowing material (mud/mud, snow/snow). To explore the bed erosion phenomenon induced by such geophysical flows, we consider the geomaterial as a continuum by performing experiments in laboratory on a model fluid that can behaves as a solid or as a liquid, depending on the conditions. Indeed, we propose an experimental study where a yield-stress fluid is implemented to model both the eroding flow and the eroded bed. Our approach is to capture the process of erosion in terms of solid-liquid transition. The studied hydrodynamics consists of a pipe-flow disturbed by the presence of an obstacle. We use a polymer micro-gel Carbopol that exhibits a Hershel-Bulkley (HB) rheology. By taking advantage of the fluid transparency, the flow is monitoring by Particle Image Velocimetry (PIV) internal visualization technique. Upstream of the obstacle, a solid-liquid-like interface between a flow zone and a dead zone appears in the fluid. In this study, we aim to investigate the dominant physical mechanism underlying the formation of the static domain, by combining the rheological characterization of the yield-stress fluid (using a rheometer), with the observation of the morphological evolution of the system substratum / flow and the local measurement of related hydrodynamic parameters. Our first result shows that the flow above the dead zone behaves as a classical plug flow, whose velocity profile can successfully be described by a Hagen-Poiseuille equation including a HB rheology, but except in a thin zone (compared to the whole flow zone) at the close vicinity of the solid-liquid interface. Thanks to a high PIV measurement resolution, we then properly examine the typical feature lying at the tail of the velocity profile. The numerical derivation of the profile shows that the shear rate in this

  9. Structural impact of cations on lipid bilayer models: nanomechanical properties by AFM-force spectroscopy.

    Science.gov (United States)

    Redondo-Morata, Lorena; Giannotti, Marina I; Sanz, Fausto

    2014-02-01

    Atomic Force Microscopy (AFM) has become an invaluable tool for studying the micro- and nanoworlds. As a stand-alone, high-resolution imaging technique and force transducer, it defies most other surface instrumentation in ease of use, sensitivity and versatility. The main strength of AFM relies on the possibility to operate in an aqueous environment on a wide variety of biological samples, from single molecules - DNA or proteins - to macromolecular assemblies like biological membranes. Understanding the effect of mechanical stress on membranes is of primary importance in biophysics, since cells are known to perform their function under a complex combination of forces. In the later years, AFM-based Force-Spectroscopy (AFM-FS) has provided a new vista on membrane mechanics in a confined area within the nanometer realm, where most of the specific molecular interactions take place. Lipid membranes are electrostatically charged entities that physiologically coexist with electrolyte solutions. Thus, specific interactions with ions are a matter of considerable interest. The distribution of ions in the solution and their interaction with the membranes are factors that substantially modify the structure and dynamics of the cell membranes. Furthermore, signaling processes are modified by the membrane capability of retaining ions. Supported Lipid Bilayers (SLBs) are a versatile tool to investigate phospholipid membranes mimicking biological surfaces. In the present contribution, we review selected experiments on the mechanical stability of SLBs as models of lipid membranes by means of AFM-FS, with special focus on the effect of cations and ionic strength in the overall nanomechanical stability.

  10. Structural studies of mixed lipid bilayers on solid substrates using x-ray reflectivity

    Science.gov (United States)

    Chen, Gang; Mukhopadhyay, Mrinmay; Ma, Yicong; Sinha, Sunil; Jiang, Zhang; Decaro, Curt; Berry, Justin; Lurio, Laurence; Brozell, Adrian; Parikh, Atul

    2009-03-01

    The lipid bilayers of natural membranes generally exist in a fluid state which occurs above the gel to liquid crystalline phase transition temperature. Knowledge of the structure of such bilayers is important for understanding fundamental biological processes mediated by or occurring within membranes. We have performed systematic measurements on bilayers of 1,2-Dipalmitoyl-sn-Glycero-3-Phosphoethanolamine (DPPE) and its mixture with 1,2-Dioleoyl-sn-Glycero-3-Phosphocholine (DOPC) and cholesterol (CH) on silicon substrates with x-ray reflectivity both below and above their phase transition temperatures. Structural variations as a function of temperature are demonstrated by fitting the reflectivity data with both a model dependent and a model independent routine. Studies of Au nanoparticle labeled DOPC and DOPC + DPPE + CH mixture are also performed and the location of Au nanoparticles in these bilayers is established by analyzing the x-ray reflectivity data.

  11. Computer Simulations of Lipid Bilayers and Proteins

    DEFF Research Database (Denmark)

    Sonne, Jacob

    2006-01-01

    , Pressure profile calculations in lipid bilayers: A lipid bilayer is merely $\\sim$5~nm thick, but the lateral pressure (parallel to the bilayer plane) varies several hundred bar on this short distance (normal to the bilayer). These variations in the lateral pressure are commonly referred to as the pressure...... of neglecting pressure contributions from long range electrostatic interactions. The first issue is addressed by comparing two methods for calculating pressure profiles, and judged by the similar results obtained by these two methods the pressure profile appears to be well-defined for fluid phase lipid bilayers......The importance of computer simulations in lipid bilayer research has become more prominent for the last couple of decades and as computers get even faster, simulations will play an increasingly important part of understanding the processes that take place in and across cell membranes. This thesis...

  12. Randomized Clinical Trial of the Innovative Bilayered Wound Dressing Made of Silk and Gelatin: Safety and Efficacy Tests Using a Split-Thickness Skin Graft Model

    Directory of Open Access Journals (Sweden)

    Sukhontha Hasatsri

    2015-01-01

    Full Text Available We developed the novel silk fibroin-based bilayered wound dressing for the treatment of partial thickness wounds. And it showed relevant characteristics and accelerated the healing of full-thickness wounds in a rat model. This study is the clinical evaluation of the bilayered wound dressing to confirm its safety and efficacy for the treatment of split-thickness skin donor sites. The safety test was performed using a patch model and no evidence of marked and severe cutaneous reactions was found. The efficacy test of the bilayered wound dressing was conducted on 23 patients with 30 split-thickness skin graft donor sites to evaluate healing time, pain score, skin barrier function, and systemic reaction in comparison to Bactigras. We found that the healing time of donor site wounds treated with the bilayered wound dressing (11 ± 6 days was significantly faster than those treated with Bactigras (14 ± 6 days (p=10-6. The wound sites treated with the bilayered wound dressing showed significantly less pain and more rapid skin functional barrier recovery than those treated with Bactigras (p=10-5. Therefore, these results confirmed the clinical safety and efficacy of the bilayered wound dressing for the treatment of split-thickness skin graft donor sites.

  13. Improved Coarse-Grained Modeling of Cholesterol-Containing Lipid Bilayers

    Energy Technology Data Exchange (ETDEWEB)

    Daily, Michael D.; Olsen, Brett N.; Schlesinger, Paul H.; Ory, Daniel S.; Baker, Nathan A.

    2014-03-24

    In mammalian cells cholesterol is essential for membrane function, but in excess can be cytototoxic. The cellular response to acute cholesterol loading involves biophysical-based mechanisms that regulate cholesterol levels, through modulation of the “activity” or accessibility of cholesterol to extra-membrane acceptors. Experiments and united atom (UA) simulations show that at high concentrations of cholesterol, lipid bilayers thin significantly and cholesterol availability to external acceptors increases substantially. Such cholesterol activation is critical to its trafficking within cells. Here we aim to reduce the computational cost to enable simulation of large and complex systems involved in cholesterol regulation, such as those including oxysterols and cholesterol-sensing proteins. To accomplish this, we have modified the published MARTINI coarse-grained force field to improve its predictions of cholesterol-induced changes in both macroscopic and microscopic properties of membranes. Most notably, MARTINI fails to capture both the (macroscopic) area condensation and membrane thickening seen at less than 30% cholesterol and the thinning seen above 40% cholesterol. The thinning at high concentration is critical to cholesterol activation. Microscopic properties of interest include cholesterol-cholesterol radial distribution functions (RDFs), tilt angle, and accessible surface area. First, we develop an “angle-corrected” model wherein we modify the coarse-grained bond angle potentials based on atomistic simulations. This modification significantly improves prediction of macroscopic properties, most notably the thickening/thinning behavior, and also slightly improves microscopic property prediction relative to MARTINI. Second, we add to the angle correction a “volume correction” by also adjusting phospholipid bond lengths to achieve a more accurate volume per molecule. The angle + volume correction substantially further improves the quantitative

  14. Computational fluid dynamics modelling in cardiovascular medicine.

    Science.gov (United States)

    Morris, Paul D; Narracott, Andrew; von Tengg-Kobligk, Hendrik; Silva Soto, Daniel Alejandro; Hsiao, Sarah; Lungu, Angela; Evans, Paul; Bressloff, Neil W; Lawford, Patricia V; Hose, D Rodney; Gunn, Julian P

    2016-01-01

    This paper reviews the methods, benefits and challenges associated with the adoption and translation of computational fluid dynamics (CFD) modelling within cardiovascular medicine. CFD, a specialist area of mathematics and a branch of fluid mechanics, is used routinely in a diverse range of safety-critical engineering systems, which increasingly is being applied to the cardiovascular system. By facilitating rapid, economical, low-risk prototyping, CFD modelling has already revolutionised research and development of devices such as stents, valve prostheses, and ventricular assist devices. Combined with cardiovascular imaging, CFD simulation enables detailed characterisation of complex physiological pressure and flow fields and the computation of metrics which cannot be directly measured, for example, wall shear stress. CFD models are now being translated into clinical tools for physicians to use across the spectrum of coronary, valvular, congenital, myocardial and peripheral vascular diseases. CFD modelling is apposite for minimally-invasive patient assessment. Patient-specific (incorporating data unique to the individual) and multi-scale (combining models of different length- and time-scales) modelling enables individualised risk prediction and virtual treatment planning. This represents a significant departure from traditional dependence upon registry-based, population-averaged data. Model integration is progressively moving towards 'digital patient' or 'virtual physiological human' representations. When combined with population-scale numerical models, these models have the potential to reduce the cost, time and risk associated with clinical trials. The adoption of CFD modelling signals a new era in cardiovascular medicine. While potentially highly beneficial, a number of academic and commercial groups are addressing the associated methodological, regulatory, education- and service-related challenges.

  15. A Two-Fluid, MHD Coronal Model

    Science.gov (United States)

    Suess, S. T.; Wang, A.-H.; Wu, S. T.; Poletto, G.; McComas, D. J.

    1999-01-01

    We describe first results from a numerical two-fluid MHD model of the global structure of the solar Corona. The model is two-fluid in the sense that it accounts for the collisional energy exchange between protons and electrons. As in our single-fluid model, volumetric heat and Momentum sources are required to produce high speed wind from Corona] holes, low speed wind above streamers, and mass fluxes similar to the empirical solar wind. By specifying different proton and electron heating functions we obtain a high proton temperature in the coronal hole and a relatively low proton temperature above the streamer (in comparison with the electron temperature). This is consistent with inferences from SOHO/UltraViolet Coronagraph Spectrometer instrument (UVCS), and with the Ulysses/Solar Wind Observations Over the Poles of the Sun instrument (SWOOPS) proton and electron temperature measurements which we show from the fast latitude scan. The density in the coronal hole between 2 and 5 solar radii (2 and 5 R(sub S)) is similar to the density reported from SPARTAN 201.-01 measurements by Fisher and Guhathakurta [19941. The proton mass flux scaled to 1 AU is 2.4 x 10(exp 8)/sq cm s, which is consistent with Ulysses observations. Inside the closed field region, the density is sufficiently high so that the simulation gives equal proton and electron temperatures due to the high collision rate. In open field regions (in the coronal hole and above the streamer) the proton and electron temperatures differ by varying amounts. In the streamer the temperature and density are similar to those reported empirically by Li et al. [1998], and the plasma beta is larger than unity everywhere above approx. 1.5 R(sub S), as it is in all other MHD coronal streamer models [e.g., Steinolfson et al., 1982; also G. A. Gary and D. Alexander, Constructing the coronal magnetic field, submitted to Solar Physics, 1998].

  16. Null fluid collapse in brane world models

    Science.gov (United States)

    Harko, Tiberiu; Lake, Matthew J.

    2014-03-01

    The brane world description of our Universe entails a large extra dimension and a fundamental scale of gravity that may be lower than the Planck scale by several orders of magnitude. An interesting consequence of this scenario occurs in the nature of spherically symmetric vacuum solutions to the brane gravitational field equations, which often have properties quite distinct from the standard black hole solutions of general relativity. In this paper, the spherically symmetric collapse on the brane world of four types of null fluid, governed by the barotropic, polytropic, strange quark "bag" model and Hagedorn equations of state, is investigated. In each case, we solve the approximate gravitational field equations, obtained in the high-density limit, determine the equation which governs the formation of apparent horizons and investigate the conditions for the formation of naked singularities. Though, naively, one would expect the increased effective energy density on the brane to favor the formation of black holes over naked singularities, we find that, for the types of fluid considered, this is not the case. However, the black hole solutions differ substantially from their general-relativistic counterparts and brane world corrections often play a role analogous to charge in general relativity. As an astrophysical application of this work, the possibility that energy emission from a Hagedorn fluid collapsing to form a naked singularity may be a source of GRBs in the brane world is also considered.

  17. Direct modeling for computational fluid dynamics

    Science.gov (United States)

    Xu, Kun

    2015-06-01

    All fluid dynamic equations are valid under their modeling scales, such as the particle mean free path and mean collision time scale of the Boltzmann equation and the hydrodynamic scale of the Navier-Stokes (NS) equations. The current computational fluid dynamics (CFD) focuses on the numerical solution of partial differential equations (PDEs), and its aim is to get the accurate solution of these governing equations. Under such a CFD practice, it is hard to develop a unified scheme that covers flow physics from kinetic to hydrodynamic scales continuously because there is no such governing equation which could make a smooth transition from the Boltzmann to the NS modeling. The study of fluid dynamics needs to go beyond the traditional numerical partial differential equations. The emerging engineering applications, such as air-vehicle design for near-space flight and flow and heat transfer in micro-devices, do require further expansion of the concept of gas dynamics to a larger domain of physical reality, rather than the traditional distinguishable governing equations. At the current stage, the non-equilibrium flow physics has not yet been well explored or clearly understood due to the lack of appropriate tools. Unfortunately, under the current numerical PDE approach, it is hard to develop such a meaningful tool due to the absence of valid PDEs. In order to construct multiscale and multiphysics simulation methods similar to the modeling process of constructing the Boltzmann or the NS governing equations, the development of a numerical algorithm should be based on the first principle of physical modeling. In this paper, instead of following the traditional numerical PDE path, we introduce direct modeling as a principle for CFD algorithm development. Since all computations are conducted in a discretized space with limited cell resolution, the flow physics to be modeled has to be done in the mesh size and time step scales. Here, the CFD is more or less a direct

  18. Ferromagnetic/superconducting bilayer structure: A model system for spin diffusion length estimation

    CERN Document Server

    Soltan, S; Habermeier, H U

    2004-01-01

    We report detailed studies on ferromagnet--superconductor bilayer structures. Epitaxial bilayer structures of half metal--colossal magnetoresistive La$_{\\mathrm{2/3}}$Ca$_{\\mathrm{1/3}}$MnO$_{\\mathrm{3}}$ (HM--CMR) and high--$T_{\\mathrm{c}}$ superconducting YBa$_{\\mathrm{2}}$Cu$_{\\mathrm{3}}$O$_{\\mathrm{7-\\delta}}$(HTSC) are grown on SrTiO$_3$ (100) single--crystalline substrates using pulsed laser deposition. Magnetization $M$(T) measurements show the coexistence of ferromagnetism and superconductivity in these structures at low temperatures. Using the HM--CMR layer as an electrode for spin polarized electrons, we discuss the role of spin polarized self injection into the HTSC layer. The experimental results are in good agreement with a presented theoretical estimation, where the spin diffusion length $\\xi_{\\mathrm {FM}}$ is found to be in the range of $\\xi_{\\mathrm{FM}} \\approx$ 10 nm.

  19. Corrugation of Phase-Separated Lipid Bilayers Supported by Nanoporous Silica Xerogel Surfaces

    Energy Technology Data Exchange (ETDEWEB)

    Goksu, E I; Nellis, B A; Lin, W; Satcher Jr., J H; Groves, J T; Risbud, S H; Longo, M L

    2008-10-30

    Lipid bilayers supported by substrates with nanometer-scale surface corrugations holds interest in understanding both nanoparticle-membrane interactions and the challenges of constructing models of cell membranes on surfaces with desirable properties, e.g. porosity. Here, we successfully form a two-phase (gel-fluid) lipid bilayer supported by nanoporous silica xerogel. Surface topology, diffusion, and lipid density in comparison to mica-supported lipid bilayers were characterized by AFM, FRAP, FCS, and quantitative fluorescence microscopy, respectively. We found that the two-phase lipid bilayer follows the xerogel surface contours. The corrugation imparted on the lipid bilayer results in a lipid density that is twice that on a flat mica surface. In direct agreement with the doubling of actual bilayer area in a projected area, we find that the lateral diffusion coefficient (D) of lipids on xerogel ({approx}1.7 {micro}m{sup 2}/s) is predictably lower than on mica ({approx}4.1 {micro}m{sup 2}/s) by both FRAP and FCS techniques. Furthermore, the gel-phase domains on xerogel compared to mica were larger and less numerous. Overall, our results suggest the presence of a relatively defect-free continuous two-phase bilayer that penetrates approximately midway into the first layer of {approx}50 nm xerogel beads.

  20. Electrorheological fluids modeling and mathematical theory

    CERN Document Server

    Růžička, Michael

    2000-01-01

    This is the first book to present a model, based on rational mechanics of electrorheological fluids, that takes into account the complex interactions between the electromagnetic fields and the moving liquid. Several constitutive relations for the Cauchy stress tensor are discussed. The main part of the book is devoted to a mathematical investigation of a model possessing shear-dependent viscosities, proving the existence and uniqueness of weak and strong solutions for the steady and the unsteady case. The PDS systems investigated possess so-called non-standard growth conditions. Existence results for elliptic systems with non-standard growth conditions and with a nontrivial nonlinear r.h.s. and the first ever results for parabolic systems with a non-standard growth conditions are given for the first time. Written for advanced graduate students, as well as for researchers in the field, the discussion of both the modeling and the mathematics is self-contained.

  1. Continuity of Monolayer-Bilayer Junctions for Localization of Lipid Raft Microdomains in Model Membranes.

    Science.gov (United States)

    Ryu, Yong-Sang; Wittenberg, Nathan J; Suh, Jeng-Hun; Lee, Sang-Wook; Sohn, Youngjoo; Oh, Sang-Hyun; Parikh, Atul N; Lee, Sin-Doo

    2016-05-27

    We show that the selective localization of cholesterol-rich domains and associated ganglioside receptors prefer to occur in the monolayer across continuous monolayer-bilayer junctions (MBJs) in supported lipid membranes. For the MBJs, glass substrates were patterned with poly(dimethylsiloxane) (PDMS) oligomers by thermally-assisted contact printing, leaving behind 3 nm-thick PDMS patterns. The hydrophobicity of the transferred PDMS patterns was precisely tuned by the stamping temperature. Lipid monolayers were formed on the PDMS patterned surface while lipid bilayers were on the bare glass surface. Due to the continuity of the lipid membranes over the MBJs, essentially free diffusion of lipids was allowed between the monolayer on the PDMS surface and the upper leaflet of the bilayer on the glass substrate. The preferential localization of sphingomyelin, ganglioside GM1 and cholesterol in the monolayer region enabled to develop raft microdomains through coarsening of nanorafts. Our methodology provides a simple and effective scheme of non-disruptive manipulation of the chemical landscape associated with lipid phase separations, which leads to more sophisticated applications in biosensors and as cell culture substrates.

  2. Imperfect fluid cosmological model in modified gravity

    CERN Document Server

    Samanta, G C

    2016-01-01

    In this article, we considered the bulk viscous fluid in the formalism of modified gravity in which the general form of a gravitational action is $f(R, T)$ function, where $R$ is the curvature scalar and $T$ is the trace of the energy momentum tensor within the frame of flat FRW space time. The cosmological model dominated by bulk viscous matter with total bulk viscous coefficient expressed as a linear combination of the velocity and acceleration of the expansion of the universe in such a way that $\\xi=\\xi_0+\\xi_1\\frac{\\dot{a}}{a}+\\xi_2\\frac{\\ddot{a}}{\\dot{a}}$, where $\\xi_0$, $\\xi_1$ and $\\xi_2$ are constants. We take $p=(\\gamma-1)\\rho$, where $0\\le\\gamma\\le2$ as an equation of state for perfect fluid. The exact solutions to the corresponding field equations are obtained by assuming a particular model of the form of $f(R, T)=R+2f(T)$, where $f(T)=\\lambda T$, $\\lambda$ is constant. We studied the four possible scenarios for different values of $\\gamma$, such as $\\gamma=0$, $\\gamma=\\frac{2}{3}$, $\\gamma=1$ and...

  3. Modeling quantum fluid dynamics at nonzero temperatures

    Science.gov (United States)

    Berloff, Natalia G.; Brachet, Marc; Proukakis, Nick P.

    2014-03-01

    The detailed understanding of the intricate dynamics of quantum fluids, in particular in the rapidly growing subfield of quantum turbulence which elucidates the evolution of a vortex tangle in a superfluid, requires an in-depth understanding of the role of finite temperature in such systems. The Landau two-fluid model is the most successful hydrodynamical theory of superfluid helium, but by the nature of the scale separations it cannot give an adequate description of the processes involving vortex dynamics and interactions. In our contribution we introduce a framework based on a nonlinear classical-field equation that is mathematically identical to the Landau model and provides a mechanism for severing and coalescence of vortex lines, so that the questions related to the behavior of quantized vortices can be addressed self-consistently. The correct equation of state as well as nonlocality of interactions that leads to the existence of the roton minimum can also be introduced in such description. We review and apply the ideas developed for finite-temperature description of weakly interacting Bose gases as possible extensions and numerical refinements of the proposed method. We apply this method to elucidate the behavior of the vortices during expansion and contraction following the change in applied pressure. We show that at low temperatures, during the contraction of the vortex core as the negative pressure grows back to positive values, the vortex line density grows through a mechanism of vortex multiplication. This mechanism is suppressed at high temperatures.

  4. Baroclinic Channel Model in Fluid Dynamics

    Directory of Open Access Journals (Sweden)

    Kharatti Lal

    2016-02-01

    Full Text Available A complex flow structure is studied using a 2-dimentional baroclinic channel model Unsteady Navier - stokes equation coupled with equation of thermal energy ,salinity and the equation of state are implemented .System closure is achieved through a modified Prandtl, s mixing length formulation of turbulence dissipation The model is applied in a region where the fluid flow is effected by various forcing equation .In this case ,flow is estuarine region affected by diurnal tide and the fresh water inflow in to the estuary and a submerged structure is considered giving possible insight in to stress effects on submerged structure .the result show that in the time evolution of the vertical velocity along downstream edge changes sign from negative to positive .as the dike length increases the primary cell splits and flow becomes turbulent du e to the non-linear effect caused by the dike .these are found to agree favourably with result published in the open literature.

  5. Eicosapentaenoic acid reduces membrane fluidity, inhibits cholesterol domain formation, and normalizes bilayer width in atherosclerotic-like model membranes.

    Science.gov (United States)

    Mason, R Preston; Jacob, Robert F; Shrivastava, Sandeep; Sherratt, Samuel C R; Chattopadhyay, Amitabha

    2016-12-01

    Cholesterol crystalline domains characterize atherosclerotic membranes, altering vascular signaling and function. Omega-3 fatty acids reduce membrane lipid peroxidation and subsequent cholesterol domain formation. We evaluated non-peroxidation-mediated effects of eicosapentaenoic acid (EPA), other TG-lowering agents, docosahexaenoic acid (DHA), and other long-chain fatty acids on membrane fluidity, bilayer width, and cholesterol domain formation in model membranes. In membranes prepared at 1.5:1 cholesterol-to-phospholipid (C/P) mole ratio (creating pre-existing domains), EPA, glycyrrhizin, arachidonic acid, and alpha linolenic acid promoted the greatest reductions in cholesterol domains (by 65.5%, 54.9%, 46.8%, and 45.2%, respectively) compared to controls; other treatments had modest effects. EPA effects on cholesterol domain formation were dose-dependent. In membranes with 1:1 C/P (predisposing domain formation), DHA, but not EPA, dose-dependently increased membrane fluidity. DHA also induced cholesterol domain formation without affecting temperature-induced changes in-bilayer unit cell periodicity relative to controls (d-space; 57Å-55Å over 15-30°C). Together, these data suggest simultaneous formation of distinct cholesterol-rich ordered domains and cholesterol-poor disordered domains in the presence of DHA. By contrast, EPA had no effect on cholesterol domain formation and produced larger d-space values relative to controls (60Å-57Å; pmembrane bilayer width, membrane fluidity, and cholesterol crystalline domain formation; suggesting omega-3 fatty acids with differing chain length or unsaturation may differentially influence membrane lipid dynamics and structural organization as a result of distinct phospholipid/sterol interactions.

  6. Modeling Fluid Flow in Faulted Basins

    Directory of Open Access Journals (Sweden)

    Faille I.

    2014-07-01

    Full Text Available This paper presents a basin simulator designed to better take faults into account, either as conduits or as barriers to fluid flow. It computes hydrocarbon generation, fluid flow and heat transfer on the 4D (space and time geometry obtained by 3D volume restoration. Contrary to classical basin simulators, this calculator does not require a structured mesh based on vertical pillars nor a multi-block structure associated to the fault network. The mesh follows the sediments during the evolution of the basin. It deforms continuously with respect to time to account for sedimentation, erosion, compaction and kinematic displacements. The simulation domain is structured in layers, in order to handle properly the corresponding heterogeneities and to follow the sedimentation processes (thickening of the layers. In each layer, the mesh is unstructured: it may include several types of cells such as tetrahedra, hexahedra, pyramid, prism, etc. However, a mesh composed mainly of hexahedra is preferred as they are well suited to the layered structure of the basin. Faults are handled as internal boundaries across which the mesh is non-matching. Different models are proposed for fault behavior such as impervious fault, flow across fault or conductive fault. The calculator is based on a cell centered Finite Volume discretisation, which ensures conservation of physical quantities (mass of fluid, heat at a discrete level and which accounts properly for heterogeneities. The numerical scheme handles the non matching meshes and guaranties appropriate connection of cells across faults. Results on a synthetic basin demonstrate the capabilities of this new simulator.

  7. Characterization and physical modeling of MOS capacitors in epitaxial graphene monolayers and bilayers on 6H-SiC

    Directory of Open Access Journals (Sweden)

    M. Winters

    2016-08-01

    Full Text Available Capacitance voltage (CV measurements are performed on planar MOS capacitors with an Al2O3 dielectric fabricated in hydrogen intercalated monolayer and bilayer graphene grown on 6H-SiC as a function of frequency and temperature. Quantitative models of the CV data are presented in conjunction with the measurements in order to facilitate a physical understanding of graphene MOS systems. An interface state density of order 2 ⋅ 1012 eV−1 cm−2 is found in both material systems. Surface potential fluctuations of order 80-90meV are also assessed in the context of measured data. In bilayer material, a narrow bandgap of 260meV is observed consequent to the spontaneous polarization in the substrate. Supporting measurements of material anisotropy and temperature dependent hysteresis are also presented in the context of the CV data and provide valuable insight into measured and modeled data. The methods outlined in this work should be applicable to most graphene MOS systems.

  8. Quantum oscillations in a bilayer with broken mirror symmetry: A minimal model for YBa2Cu3O6+δ

    Science.gov (United States)

    Maharaj, Akash V.; Zhang, Yi; Ramshaw, B. J.; Kivelson, S. A.

    2016-03-01

    Using an exact numerical solution and semiclassical analysis, we investigate quantum oscillations (QOs) in a model of a bilayer system with an anisotropic (elliptical) electron pocket in each plane. Key features of QO experiments in the high temperature superconducting cuprate YBCO can be reproduced by such a model, in particular the pattern of oscillation frequencies (which reflect "magnetic breakdown" between the two pockets) and the polar and azimuthal angular dependence of the oscillation amplitudes. However, the requisite magnetic breakdown is possible only under the assumption that the horizontal mirror plane symmetry is spontaneously broken and that the bilayer tunneling t⊥ is substantially renormalized from its `bare' value. Under the assumption that t⊥=Z ˜t⊥(0) , where Z ˜ is a measure of the quasiparticle weight, this suggests that Z ˜≲1 /20 . Detailed comparisons with new YBa2Cu3O6.58 QO data, taken over a very broad range of magnetic field, confirm specific predictions made by the breakdown scenario.

  9. Viscoelastic Model Analogy of the Dark Cosmic Fluid

    CERN Document Server

    Brevik, Iver

    2015-01-01

    A one-component dark energy fluid model of the late universe is considered ($w \\zeta$. This is just as one would expect physically. The corresponding entropy production is also considered. A special point emphasized in the paper is the analogy that exists between the cosmic fluid and a so-called Maxwell fluid in viscoelasticity.

  10. Null fluid collapse in brane world models

    CERN Document Server

    Harko, Tiberiu

    2013-01-01

    The brane world description of our universe entails a large extra dimension and a fundamental scale of gravity that may be lower than the Planck scale by several orders of magnitude. An interesting consequence of this scenario occurs in the nature of spherically-symmetric vacuum solutions to the brane gravitational field equations, which often have properties quite distinct from the standard black hole solutions of general relativity. In this paper, the spherically-symmetric collapse on the brane world of four types of null fluid, governed by the barotropic, polytropic, strange quark "bag" model and Hagedorn equations of state, is investigated. In each case, we solve the approximate gravitational field equations, obtained in the high density limit, determine the equation which governs the formation of apparent horizons and investigate the conditions for the formation of naked singularities. Though, naively, one would expect the increased effective energy density on the brane to favor the formation of black ho...

  11. A comparison of coarse-grained and continuum models for membrane bending in lipid bilayer fusion pores.

    Science.gov (United States)

    Yoo, Jejoong; Jackson, Meyer B; Cui, Qiang

    2013-02-19

    To establish the validity of continuum mechanics models quantitatively for the analysis of membrane remodeling processes, we compare the shape and energies of the membrane fusion pore predicted by coarse-grained (MARTINI) and continuum mechanics models. The results at these distinct levels of resolution give surprisingly consistent descriptions for the shape of the fusion pore, and the deviation between the continuum and coarse-grained models becomes notable only when the radius of curvature approaches the thickness of a monolayer. Although slow relaxation beyond microseconds is observed in different perturbative simulations, the key structural features (e.g., dimension and shape of the fusion pore near the pore center) are consistent among independent simulations. These observations provide solid support for the use of coarse-grained and continuum models in the analysis of membrane remodeling. The combined coarse-grained and continuum analysis confirms the recent prediction of continuum models that the fusion pore is a metastable structure and that its optimal shape is neither toroidal nor catenoidal. Moreover, our results help reveal a new, to our knowledge, bowing feature in which the bilayers close to the pore axis separate more from one another than those at greater distances from the pore axis; bowing helps reduce the curvature and therefore stabilizes the fusion pore structure. The spread of the bilayer deformations over distances of hundreds of nanometers and the substantial reduction in energy of fusion pore formation provided by this spread indicate that membrane fusion can be enhanced by allowing a larger area of membrane to participate and be deformed. Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

  12. Tribodynamic Modeling of Digital Fluid Power Motors

    DEFF Research Database (Denmark)

    Johansen, Per

    In fluid power engineering, efficiency and reliability optimization have become a major objective. The interest in using fluid power transmission in wind and wave energy applications are producing requirements concerning efficiency and reliability in order to compete with other transmission systems...... of digital fluid power displacement units has been able to address this problem. The main idea of the digital fluid power displacement technology is to disable individual chambers, by use of electrical actuated valves. A displacement chamber is disabled by keeping the valve, between the chamber and the low...... design methods and tools are important to the development of digital fluid power machines. The work presented in this dissertation is part of a research program focusing on the development of digital fluid power MW-motors for use in hydraulic drive train in wind turbines. As part of this development...

  13. Horizontal Bilayer for Electrical and Optical Recordings

    Directory of Open Access Journals (Sweden)

    Alf Honigmann

    2012-12-01

    Full Text Available Artificial bilayer containing reconstituted ion channels, transporters and pumps serve as a well-defined model system for electrophysiological investigations of membrane protein structure–function relationship. Appropriately constructed microchips containing horizontally oriented bilayers with easy solution access to both sides provide, in addition, the possibility to investigate these model bilayer membranes and the membrane proteins therein with high resolution fluorescence techniques up to the single-molecule level. Here, we describe a bilayer microchip system in which long-term stable horizontal free-standing and hydrogel-supported bilayers can be formed and demonstrate its prospects particularly for single-molecule fluorescence spectroscopy and high resolution fluorescence microscopy in probing the physicochemical properties like phase behavior of the bilayer-forming lipids, as well as in functional studies of membrane proteins.

  14. Multiscale modelling of fluid-immersed granular media

    OpenAIRE

    Clément, Christian Paul André René

    2010-01-01

    In this thesis we present numerical simulation studies of fluid-immersed granular systems using models of varying scales and complexities. These techniques are used to examine the effects of an interstitial fluid on the dynamics of dense granular beds within a number of vibrated systems. After an introduction to the field of granular materials, we present the techniques used to model both the granular dynamics and the fluid flow. We introduce various multiscale techniques to couple the mo...

  15. Possible new phenomenology in turbostratic graphene bilayer as a solid-state realization of a two-brane world model

    CERN Document Server

    Sarrazin, Michael

    2014-01-01

    It is suggested that two turbostratic graphene layers can be described through a formalism previously introduced for the study of braneworlds in high energy physics. It is demonstrated that any graphene bilayer can be conveniently described as a noncommutative two-sheeted (2+1) spacetime. The model Hamiltonian contains a coupling term connecting the two layers which is a reminiscent of the coupling which may exist between two braneworlds at a quantum level. In the present case, this term is related to a K-K' intervalley coupling. Phenomenological consequences are emphasized such as exciton swapping between the two graphene sheets. An experimental device is suggested to study this possible new effect. If demonstrated, this effet could lead to new technological applications. Incidentally, this demonstration could be also an indirect way to test the braneworld hypothesis.

  16. Dissipative particle dynamics simulation study of the bilayer-vesicle transition

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    A bilayer structure is an important immediate for the vesicle formation. However,the mechanism for the bilayer-vesicle transition remains unclear. In this work,a dissipative particle dynamics(DPD) simulation method was employed to study the mechanism of the bilayer-vesicle transition. A coarse-grained model was built based on a lipid molecule termed dimyristoylphosphatidylcholine(DMPC). Simulations were performed from two different initial configurations:a random dispersed solution and a tensionless bilayer. It was found that the bilayer-vesicle transition was driven by the minimization of the water-tail hydrophobic interaction energy,and was accompanied with the increase of the position entropy due to the redistribution of water molecules. The bulk pressure was reduced during the bilayer-vesicle transition,suggesting the evolved vesicle morphology was at the relatively low free energy state. The membrane in the product vesicle was a two-dimensional fluid. It can be concluded that the membrane of a vesicle is not interdigitated and most of the bonds in lipid chains are inclined to orient along the radical axis of the vesicle.

  17. Formation of individual protein channels in lipid bilayers suspended in nanopores.

    Science.gov (United States)

    Studer, André; Han, Xiaojun; Winkler, Fritz K; Tiefenauer, Louis X

    2009-10-15

    Free-standing lipid bilayers are formed in regularly arranged nanopores of 200, 400 and 800 nm in a 300 nm thin hydrophobic silicon nitride membrane separating two fluid compartments. The extraordinary stability of the lipid bilayers allows us to monitor channel formation of the model peptide melittin and alpha-hemolysin from Staphylococcus aureus using electrochemical impedance spectroscopy and chronoamperometry. We observed that melittin channel formation is voltage-dependent and transient, whereas transmembrane heptameric alpha-hemolysin channels in nano-BLMs persist for hours. The onset of alpha-hemolysin-mediated conduction depends on the applied protein concentration and strongly on the diameter of the nanopores. Heptameric channel formation from adsorbed alpha-hemolysin monomers needs more time in bilayers suspended in 200 nm pores compared to bilayers in pores of 400 and 800 nm diameters. Diffusion of sodium ions across alpha-hemolysin channels present in a sufficiently high number in the bilayers was quantitatively and specifically determined using ion selective electrodes. The results demonstrate that relatively small variations of nano-dimensions have a tremendous effect on observable dynamic biomolecular processes. Such nanopore chips are potentially useful as supports for stable lipid bilayers to establish functional assays of membrane proteins needed in basic research and drug discovery.

  18. Modeling two-rate adsorption kinetics: Two-site, two-species, bilayer and rearrangement adsorption processes.

    Science.gov (United States)

    Tripathi, Sumit; Tabor, Rico F

    2016-08-15

    The adsorption kinetics of many systems show apparent two-rate processes, where there appears to be resolved fast and slow adsorption steps. Such non-standard adsorption processes cannot be accounted for by conventional modeling methods, motivating new approaches. In this work, we present four different models that can account for two-rate adsorption and are based upon physically realistic processes - two adsorbing species, two surface sites having different energies, bilayer formation and molecular rearrangement modes. Each model is tested using a range of conditions, and the characteristic behavior is explored and compared. In these models, the effects of mass transport and bulk concentration are also accounted for, making them applicable in systems which are transport-limited or attachment-limited, or intermediate between the two. The applicability of these models is demonstrated by fitting exemplar experimental data for each of the four models, selecting the model on the basis of the known physical behavior of the adsorption kinetics. These models can be applied in a wide range of systems, from stagnant adsorption in large volume water treatment to highly dynamic flow conditions relevant to printing, coating and processing applications. Copyright © 2016 Elsevier Inc. All rights reserved.

  19. Modeling of Dynamic Fluid Forces in Fast Switching Valves

    DEFF Research Database (Denmark)

    Roemer, Daniel Beck; Johansen, Per; Pedersen, Henrik Clemmensen;

    2015-01-01

    Switching valves experience opposing fluid forces due to movement of the moving member itself, as the surrounding fluid volume must move to accommodate the movement. This movement-induced fluid force may be divided into three main components; the added mass term, the viscous term and the socalled...... history term. For general valve geometries there are no simple solution to either of these terms. During development and design of such switching valves, it is therefore, common practice to use simple models to describe the opposing fluid forces, neglecting all but the viscous term which is determined...... based on shearing areas and venting channels. For fast acting valves the opposing fluid force may retard the valve performance significantly, if appropriate measures are not taken during the valve design. Unsteady Computational Fluid Dynamics (CFD) simulations are available to simulate the total fluid...

  20. Lattice Boltzmann Models for Multicomponent Fluids

    Science.gov (United States)

    2007-11-02

    between multiphase fluids. Two specific physical problems investigated: the shape of a sessile drop on a horizontal surface subjected to a gravitational field, and the effect of surface tension on contact angle .

  1. Fluid Model of Waveguide Transverse Coupling

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    In this paper, optical fluid is firstly defined. By using the movement law of hydrodynamics, the transverse coupling of waveguides is discussed. The result fully coincides with the electromagnetic solution.

  2. How lidocaine influences the bilayer thickness and bending elasticity of biomembranes

    Energy Technology Data Exchange (ETDEWEB)

    Zheng Yi; Nagao, Michihiro; Bossev, Dobrin P, E-mail: zhyi@indiana.edu

    2010-11-01

    We have studied how local anesthetics influence the structural and dynamical properties of model bio-membranes. The measurements of small-angle neutron scattering have been performed on 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) unilamellar vesicles with different concentrations of lidocaine in D{sub 2}O to determine the bilayer thickness as a function of the lidocaine concentration. The neutron-spin echo spectroscopy (NSE) has been used to study the influence of lidocaine on the bending elasticity of DMPC bilayers in fluid crystal phase (L{sub {alpha}}) and the ripple gel (P{sub {beta}}') phase.

  3. Acellular bi-layer silk fibroin scaffolds support tissue regeneration in a rabbit model of onlay urethroplasty.

    Directory of Open Access Journals (Sweden)

    Yeun Goo Chung

    Full Text Available Acellular scaffolds derived from Bombyx mori silk fibroin were investigated for their ability to support functional tissue regeneration in a rabbit model of urethra repair. A bi-layer silk fibroin matrix was fabricated by a solvent-casting/salt leaching process in combination with silk fibroin film casting to generate porous foams buttressed by homogeneous silk fibroin films. Ventral onlay urethroplasty was performed with silk fibroin grafts (Group 1, N = 4 (Width × Length, 1 × 2 cm(2 in adult male rabbits for 3 m of implantation. Parallel control groups consisted of animals receiving small intestinal submucosa (SIS implants (Group 2, N = 4 or urethrotomy alone (Group 3, N = 3. Animals in all groups exhibited 100% survival prior to scheduled euthanasia and achieved voluntary voiding following 7 d of initial catheterization. Retrograde urethrography of each implant group at 3 m post-op revealed wide urethral calibers and preservation of organ continuity similar to pre-operative and urethrotomy controls with no evidence of contrast extravasation, strictures, fistulas, or stone formation. Histological (hematoxylin and eosin and Masson's trichrome, immunohistochemical, and histomorphometric analyses demonstrated that both silk fibroin and SIS scaffolds promoted similar extents of smooth muscle and epithelial tissue regeneration throughout the original defect sites with prominent contractile protein (α-smooth muscle actin and SM22α and cytokeratin expression, respectively. De novo innervation and vascularization were also evident in all regenerated tissues indicated by synaptophysin-positive neuronal cells and vessels lined with CD31 expressing endothelial cells. Following 3 m post-op, minimal acute inflammatory reactions were elicited by silk fibroin scaffolds characterized by the presence of eosinophil granulocytes while SIS matrices promoted chronic inflammatory responses indicated by mobilization of mononuclear cell infiltrates. The results

  4. Turbulence theories and modelling of fluids and plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Yoshizawa, Akira; Yokoi, Nobumitsu [Institute of Industrial Science, Univ. of Tokyo, Tokyo (Japan); Itoh, Sanae-I. [Research Institute for Applied Mechanics, Kyushu Univ., Kasuga, Fukuoka (Japan); Itoh, Kimitaka [National Inst. for Fusion Science, Toki, Gifu (Japan)

    2001-04-01

    Theoretical and heuristic modelling methods are reviewed for studying turbulence phenomena of fluids and plasmas. Emphasis is put on understanding of effects on turbulent characteristics due to inhomogeneities of field and plasma parameters. The similarity and dissimilarity between the methods for fluids and plasmas are sought in order to shed light on the properties that are shared or not by fluid and plasma turbulence. (author)

  5. Turbulence theories and modelling of fluids and plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Yoshizawa, Akira; Yokio, Nobumitsu [Institute of Industrial Science, University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8505 (Japan); Itoh, Sanae-I [Research Institute for Applied Mechanics, Kyushu University, 87, Kasuga 816-8580 (Japan); Itoh, Kimitaka [National Institute for Fusion Science, Toki, Gifu 509-5292 (Japan)

    2001-03-01

    Theoretical and heuristic modelling methods are reviewed for studying turbulence phenomena of fluids and plasmas. Emphasis is placed on understanding of effects on turbulence characteristics due to inhomogeneities of field and plasma parameters. The similarity and dissimilarity between the methods for fluids and plasmas are sought in order to shed light on the properties that are shared or not by fluid and plasma turbulence. (author)

  6. Surface tension driven flow in glass melts and model fluids

    Science.gov (United States)

    Mcneil, T. J.; Cole, R.; Subramanian, R. S.

    1982-01-01

    Surface tension driven flow has been investigated analytically and experimentally using an apparatus where a free column of molten glass or model fluids was supported at its top and bottom faces by solid surfaces. The glass used in the experiments was sodium diborate, and the model fluids were silicone oils. In both the model fluid and glass melt experiments, conclusive evidence was obtained to prove that the observed flow was driven primarily by surface tension forces. The experimental observations are in qualitative agreement with predictions from the theoretical model.

  7. Pseudocritical Behavior and Unbinding of Phospholipid Bilayers

    DEFF Research Database (Denmark)

    Lemmich, Jesper; Mortensen, Kell; Ipsen, John Hjorth;

    1995-01-01

    The temperature dependence of the small-angle neutron scattering from fully hydrated multilamellar phospholipid bilayers near the main phase transition is analyzed by means of a simple geometric model which yields both the lamellar repeat distance as well as the hydrophobic thickness of the bilayer...

  8. Modeling Tools Predict Flow in Fluid Dynamics

    Science.gov (United States)

    2010-01-01

    "Because rocket engines operate under extreme temperature and pressure, they present a unique challenge to designers who must test and simulate the technology. To this end, CRAFT Tech Inc., of Pipersville, Pennsylvania, won Small Business Innovation Research (SBIR) contracts from Marshall Space Flight Center to develop software to simulate cryogenic fluid flows and related phenomena. CRAFT Tech enhanced its CRUNCH CFD (computational fluid dynamics) software to simulate phenomena in various liquid propulsion components and systems. Today, both government and industry clients in the aerospace, utilities, and petrochemical industries use the software for analyzing existing systems as well as designing new ones."

  9. Modeling of Dynamic Fluid Forces in Fast Switching Valves

    DEFF Research Database (Denmark)

    Roemer, Daniel Beck; Johansen, Per; Pedersen, Henrik Clemmensen;

    2015-01-01

    force, but these models are computationally expensive and are not suitable for evaluating large numbers of different operation conditions or even design optimization. In the present paper, an effort is done to describe these fluid forces and their origin. An example of the total opposing fluid force...

  10. Lipid bilayers and interfaces

    NARCIS (Netherlands)

    Kik, R.A.

    2007-01-01

    In biological systems lipid bilayers are subject to many different interactions with other entities. These can range from proteins that are attached to the hydrophilic region of the bilayer or transmembrane proteins that interact with the hydrophobic region of the lipid bilayer. Interaction between

  11. Versatile and Robust Software for Multi-Fluid Plasma Modeling

    Science.gov (United States)

    2013-01-21

    models ,   MHD ,   Hall   MHD ,  two...described  by  two-­‐fluid  or  Hall   MHD  initially  evolves  to   something  where  only  kinetic   model  is  strictly...AFRL-OSR-VA-TR-2013-0153 "Versatile and Robust Software forMulti‐Fluid Plasma Modeling ” John Loverich and Uri Shumlak

  12. A two-fluid model for avalanche and debris flows.

    Science.gov (United States)

    Pitman, E Bruce; Le, Long

    2005-07-15

    Geophysical mass flows--debris flows, avalanches, landslides--can contain O(10(6)-10(10)) m(3) or more of material, often a mixture of soil and rocks with a significant quantity of interstitial fluid. These flows can be tens of meters in depth and hundreds of meters in length. The range of scales and the rheology of this mixture presents significant modelling and computational challenges. This paper describes a depth-averaged 'thin layer' model of geophysical mass flows containing a mixture of solid material and fluid. The model is derived from a 'two-phase' or 'two-fluid' system of equations commonly used in engineering research. Phenomenological modelling and depth averaging combine to yield a tractable set of equations, a hyperbolic system that describes the motion of the two constituent phases. If the fluid inertia is small, a reduced model system that is easier to solve may be derived.

  13. A Warm Fluid Model of Intense Laser-Plasma Interactions

    Science.gov (United States)

    Tarkenton, G. M.; Shadwick, B. A.; Esarey, E. H.; Leemans, W. P.

    2001-10-01

    Following up on our previous work on modeling intense laser-plasma interactions with cold fluids,(B.A.Shadwick, G. M. Tarkenton, E.H. Esarey, and W.P. Leemans, ``Fluid Modeling of Intense Laser-Plasma Interactions'', in Advanced Accelerator Concepts), P. Colestock and S. Kelley editors, AIP Conf. Proc. 569 (AIP, NY 2001), pg. 154. we are exploring warm fluid models. These models represent the next level in a hierarchy of complexity beyond the cold fluid approximation. With only a modest increase in computation effort, warm fluids incorporate effects that are relevant to a variety of technologically interesting cases. We present a derivation of the warm fluid from a kinetic (i.e. Vlasov) perspective and make a connection with the usual relativistic thermodynamic approach.(S. R. de Groot, W. A. van Leeuwen and Ch. G. van Weert, Relativistic Kinetic Theory: Principles and Applications), North-Holland (1980). We will provide examples where the warm fluids yield physics results not contained in the cold model and discuss experimental parameters where these effects are believed to be important.

  14. Multiphase fluid hammer: modeling, experiments and simulations

    OpenAIRE

    Lema Rodríguez, Marcos

    2013-01-01

    This thesis deals with the experimental and numerical analysis of the water hammer phenomenon generated by the discharge of a pressurized liquid into a pipeline kept under vacuum conditions. This flow configuration induces several multiphase phenomena such as cavitation and gas desorption that cannot be ignored in the water hammer behavior.The motivation of this research work comes from the liquid propulsion systems used in spacecrafts, which can undergo fluid hammer effects threatening the s...

  15. Electromechanical oscillations in bilayer graphene

    Science.gov (United States)

    Benameur, Muhammed M.; Gargiulo, Fernando; Manzeli, Sajedeh; Autès, Gabriel; Tosun, Mahmut; Yazyev, Oleg V.; Kis, Andras

    2015-10-01

    Nanoelectromechanical systems constitute a class of devices lying at the interface between fundamental research and technological applications. Realizing nanoelectromechanical devices based on novel materials such as graphene allows studying their mechanical and electromechanical characteristics at the nanoscale and addressing fundamental questions such as electron-phonon interaction and bandgap engineering. In this work, we realize electromechanical devices using single and bilayer graphene and probe the interplay between their mechanical and electrical properties. We show that the deflection of monolayer graphene nanoribbons results in a linear increase in their electrical resistance. Surprisingly, we observe oscillations in the electromechanical response of bilayer graphene. The proposed theoretical model suggests that these oscillations arise from quantum mechanical interference in the transition region induced by sliding of individual graphene layers with respect to each other. Our work shows that bilayer graphene conceals unexpectedly rich and novel physics with promising potential in applications based on nanoelectromechanical systems.

  16. Multiscale Turbulence Models Based on Convected Fluid Microstructure

    CERN Document Server

    Holm, Darryl D

    2012-01-01

    The Euler-Poincar\\'e approach to complex fluids is used to derive multiscale equations for computationally modelling Euler flows as a basis for modelling turbulence. The model is based on a \\emph{kinematic sweeping ansatz} (KSA) which assumes that the mean fluid flow serves as a Lagrangian frame of motion for the fluctuation dynamics. Thus, we regard the motion of a fluid parcel on the computationally resolvable length scales as a moving Lagrange coordinate for the fluctuating (zero-mean) motion of fluid parcels at the unresolved scales. Even in the simplest 2-scale version on which we concentrate here, the contributions of the fluctuating motion under the KSA to the mean motion yields a system of equations that extends known results and appears to be suitable for modelling nonlinear backscatter (energy transfer from smaller to larger scales) in turbulence using multiscale methods.

  17. Development of an analytical model for organic-fluid fouling

    Energy Technology Data Exchange (ETDEWEB)

    Panchal, C.B.; Watkinson, A.P.

    1994-10-01

    The research goal of this project is to determine ways to effectively mitigate fouling in organic fluids: hydrocarbons and derived fluids. The fouling research focuses on the development of methodology for determining threshold conditions for fouling. Initially, fluid containing chemicals known to produce foulant is analyzed; subsequently, fouling of industrial fluids is investigated. The fouling model developed for determining the effects of physical parameters is the subject of this report. The fouling model is developed on the premise that the chemical reaction for generation of precursor can take place in the bulk fluid, in the thermal-boundary layer, or at the fluid/wall interface, depending upon the interactive effects of fluid dynamics, heat and mass transfer, and the controlling chemical reaction. In the analysis, the experimental data are examined for fouling deposition of polyperoxide produced by autoxidation of indene in kerosene. The effects of fluid and wall temperatures for two flow geometries are analyzed. The results show that the relative effects of physical parameters on the fouling rate differ for the three fouling mechanisms. Therefore, to apply the closed-flow-loop data to industrial conditions, the controlling mechanism must be identified.

  18. Small data global existence for a fluid-structure model

    Science.gov (United States)

    Ignatova, Mihaela; Kukavica, Igor; Lasiecka, Irena; Tuffaha, Amjad

    2017-02-01

    We address the system of partial differential equations modeling motion of an elastic body inside an incompressible fluid. The fluid is modeled by the incompressible Navier-Stokes equations while the structure is represented by the damped wave equation with interior damping. The additional boundary stabilization γ, considered in our previous paper, is no longer necessary. We prove the global existence and exponential decay of solutions for small initial data in a suitable Sobolev space.

  19. A Drift-Diffusion-Reaction Model for Excitonic Photovoltaic Bilayers: Asymptotic Analysis and A 2-D HDG Finite-Element Scheme

    CERN Document Server

    Brinkman, Daniel; Markowich, Peter A; Wolfram, Marie-Therese

    2012-01-01

    We present and discuss a mathematical model for the operation of bilayer organic photovoltaic devices. Our model couples drift-diffusion-recombination equations for the charge carriers (specifically, electrons and holes) with a reaction-diffusion equation for the excitons/ polaron pairs and Poisson's equation for the self-consistent electrostatic potential. The material difference (i.e. the HOMO/LUMO gap) of the two organic substrates forming the bilayer device are included as a work-function potential. Firstly, we perform an asymptotic analysis of the scaled one-dimensional stationary state system i) with focus on the dynamics on the interface and ii) with the goal of simplifying the bulk dynamics away for the interface. Secondly, we present a twodimensional Hybrid Discontinuous Galerkin Finite Element numerical scheme which is very well suited to resolve i) the material changes ii) the resulting strong variation over the interface and iii) the necessary upwinding in the discretization of drift-diffusion equ...

  20. Acellular bi-layer silk fibroin scaffolds support functional tissue regeneration in a rat model of onlay esophagoplasty.

    Science.gov (United States)

    Algarrahi, Khalid; Franck, Debra; Ghezzi, Chiara E; Cristofaro, Vivian; Yang, Xuehui; Sullivan, Maryrose P; Chung, Yeun Goo; Affas, Saif; Jennings, Russell; Kaplan, David L; Estrada, Carlos R; Mauney, Joshua R

    2015-06-01

    Surgical management of long-gap esophageal defects with autologous gastrointestinal tissues is frequently associated with adverse complications including organ dysmotility, dysphagia, and donor site morbidity. In order to develop alternative graft options, bi-layer silk fibroin (SF) scaffolds were investigated for their potential to support functional tissue regeneration in a rodent model of esophageal repair. Onlay esophagoplasty was performed with SF matrices (N = 40) in adult rats for up to 2 m of implantation. Parallel groups consisted of animals implanted with small intestinal submucosa (SIS) scaffolds (N = 22) or sham controls receiving esophagotomy alone (N = 20). Sham controls exhibited a 100% survival rate while rats implanted with SF and SIS scaffolds displayed respective survival rates of 93% and 91% prior to scheduled euthanasia. Animals in each experimental group were capable of solid food consumption following a 3 d post-op liquid diet and demonstrated similar degrees of weight gain throughout the study period. End-point μ-computed tomography at 2 m post-op revealed no evidence of contrast extravasation, fistulas, strictures, or diverticula in any of the implant groups. Ex vivo tissue bath studies demonstrated that reconstructed esophageal conduits supported by both SF and SIS scaffolds displayed contractile responses to carbachol, KCl and electrical field stimulation while isoproterenol produced tissue relaxation. Histological (Masson's trichrome and hematoxylin and eosin) and immunohistochemical (IHC) evaluations demonstrated both implant groups produced de novo formation of skeletal and smooth muscle bundles positive for contractile protein expression [fast myosin heavy chain (MY32) and α-smooth muscle actin (α-SMA)] within the graft site. However, SF matrices promoted a significant 4-fold increase in MY32+ skeletal muscle and a 2-fold gain in α-SMA+ smooth muscle in comparison to the SIS cohort as determined by histomorphometric

  1. Viscoelastic Modelling of Solid Rocket Propellants using Maxwell Fluid Model

    Directory of Open Access Journals (Sweden)

    Himanshu Shekhar

    2010-07-01

    Full Text Available Maxwell fluid model consisting of a spring and a dashpot in series is applied for viscoelastic characterisation of solid rocket propellants. Suitable values of spring constant and damping coefficient wereemployed by least square variation of errors for generation of complete stress-strain curve in uniaxial tensile mode for case-bonded solid propellant formulations. Propellants from the same lot were tested at different strain rates. It was observed that change in spring constant, representing elastic part was very small with strain rate but damping constant varies significantly with variation in strain rate. For a typical propellant formulation, when strain rate was raised from 0.00037/s to 0.185/s, spring constant K changed from 5.5 MPato 7.9 MPa, but damping coefficient D was reduced from 1400 MPa-s to 4 MPa-s. For all strain rates, stress-strain curve was generated using Maxwell model and close matching with actual test curve was observed.This indicates validity of Maxwell fluid model for uniaxial tensile testing curves of case-bonded solid propellant formulations. It was established that at higher strain rate, damping coefficient becomes negligible as compared to spring constant. It was also observed that variation of spring constant is logarithmic with strain rate and that of damping coefficient follows power law. The correlation coefficients were introduced to ascertain spring constants and damping coefficients at any strain rate from that at a reference strain rate. Correlationfor spring constant needs a coefficient H, which is function of propellant formulation alone and not of test conditions and the equation developeds K2 = K1 + H ´ ln{(de2/dt/(de1/dt}. Similarly for damping coefficient D also another constant S is introduced and prediction formula is given by D2 = D1 ´ {(de2/dt/(de1/dt}S.Evaluating constants H and S at different strain rates validate this mathematical formulation for differentpropellant formulations

  2. Continuum-kinetic-microscopic model of lung clearance due to core-annular fluid entrainment

    Science.gov (United States)

    Mitran, Sorin

    2013-07-01

    The human lung is protected against aspirated infectious and toxic agents by a thin liquid layer lining the interior of the airways. This airway surface liquid is a bilayer composed of a viscoelastic mucus layer supported by a fluid film known as the periciliary liquid. The viscoelastic behavior of the mucus layer is principally due to long-chain polymers known as mucins. The airway surface liquid is cleared from the lung by ciliary transport, surface tension gradients, and airflow shear forces. This work presents a multiscale model of the effect of airflow shear forces, as exerted by tidal breathing and cough, upon clearance. The composition of the mucus layer is complex and variable in time. To avoid the restrictions imposed by adopting a viscoelastic flow model of limited validity, a multiscale computational model is introduced in which the continuum-level properties of the airway surface liquid are determined by microscopic simulation of long-chain polymers. A bridge between microscopic and continuum levels is constructed through a kinetic-level probability density function describing polymer chain configurations. The overall multiscale framework is especially suited to biological problems due to the flexibility afforded in specifying microscopic constituents, and examining the effects of various constituents upon overall mucus transport at the continuum scale.

  3. Continuum-kinetic-microscopic model of lung clearance due to core-annular fluid entrainment

    Energy Technology Data Exchange (ETDEWEB)

    Mitran, Sorin, E-mail: mitran@unc.edu

    2013-07-01

    The human lung is protected against aspirated infectious and toxic agents by a thin liquid layer lining the interior of the airways. This airway surface liquid is a bilayer composed of a viscoelastic mucus layer supported by a fluid film known as the periciliary liquid. The viscoelastic behavior of the mucus layer is principally due to long-chain polymers known as mucins. The airway surface liquid is cleared from the lung by ciliary transport, surface tension gradients, and airflow shear forces. This work presents a multiscale model of the effect of airflow shear forces, as exerted by tidal breathing and cough, upon clearance. The composition of the mucus layer is complex and variable in time. To avoid the restrictions imposed by adopting a viscoelastic flow model of limited validity, a multiscale computational model is introduced in which the continuum-level properties of the airway surface liquid are determined by microscopic simulation of long-chain polymers. A bridge between microscopic and continuum levels is constructed through a kinetic-level probability density function describing polymer chain configurations. The overall multiscale framework is especially suited to biological problems due to the flexibility afforded in specifying microscopic constituents, and examining the effects of various constituents upon overall mucus transport at the continuum scale.

  4. Dynamics, Surface Electrostatics and Phase Properties of Nanoscale Curved Lipid Bilayers

    Science.gov (United States)

    Koolivand, Amir

    Surface electrostatic potential of a lipid bilayer governs many vital functions of living cells. Several classes of proteins are known of exhibiting strong binding preferences to curved lipid bilayer surfaces. In this project we employed electron paramagnetic resonance (EPR) of a recently introduced phospholipid (IMTSL-PTE) bearing a pH-sensitive nitroxide covalently attached to the lipid head group to measure the surface electrostatics of the lipid membrane and nanopore-confined lipid bilayers as a function of the bilayer curvature. The pKa of the ionizable group of this lipid-based spin probe is reporting on the bilayer surface electrostatics potential by changes in the EPR spectra. Specifically, both rotational dynamics and magnetic parameters of the nitroxide are affected by the probe protonation. Effect of curvature on the surface electrostatic potential and dynamics of lipid bilayer was studied for POPG and DMPG unilamellar vesicles (ULVs). It was found that the magnitude of the negative surface electrostatic potential increased upon decrease in the vesicle diameter for the bilayers in the fluid phase; however, no significant changes were observed for DMPG ULVs in a gel phase. We speculate that biologically relevant fluid bilayer phase allows for a larger variability in the lipid packing density in the lipid polar head group region than a more ordered gel phase and it is likely that the lipid flip-flop is responsible for pH equilibration of IMTSL-PTE. The kinetic EPR study of nitroxide reduction showed that the rate of flip-flop is in the order of 10-5 s-1. The flip-flop rate constant increases when vesicle size deceases. Oxygen permeability measured by X-ban EPR decreases in higher curved vesicles---an observation that is consistent with a tighter packing in smaller vesicles. Partitioning of a small nitroxide molecule TEMPO into ULVs was measured by X-band (9 GHz) and W-band (95 GHz) EPR spectroscopy. The partitioning coefficient of this probe in the lipid

  5. Time-dependent bladder tissue regeneration using bilayer bladder acellular matrix graft-silk fibroin scaffolds in a rat bladder augmentation model.

    Science.gov (United States)

    Zhao, Yang; He, Yi; Zhou, Zhe; Guo, Jian-hua; Wu, Jia-sheng; Zhang, Ming; Li, Wei; Zhou, Juan; Xiao, Dong-dong; Wang, Zhong; Sun, Kang; Zhu, Ying-jian; Lu, Mu-jun

    2015-09-01

    With advances in tissue engineering, various synthetic and natural biomaterials have been widely used in tissue regeneration of the urinary bladder in rat models. However, reconstructive procedures remain insufficient due to the lack of appropriate scaffolding, which should provide a waterproof barrier function and support the needs of various cell types. To address these problems, we have developed a bilayer scaffold comprising a porous network (silk fibroin [SF]) and an underlying natural acellular matrix (bladder acellular matrix graft [BAMG]) and evaluated its feasibility and potential for bladder regeneration in a rat bladder augmentation model. Histological (hematoxylin and eosin and Masson's trichrome staining) and immunohistochemical analyses demonstrated that the bilayer BAMG-SF scaffold promoted smooth muscle, blood vessel, and nerve regeneration in a time-dependent manner. At 12weeks after implantation, bladders reconstructed with the BAMG-SF matrix displayed superior structural and functional properties without significant local tissue responses or systemic toxicity. These results demonstrated that the bilayer BAMG-SF scaffold may be a promising scaffold with good biocompatibility for bladder regeneration in the rat bladder augmentation model.

  6. Biomineralization-inspired synthesis of chitosan/hydroxyapatite biocomposites based on a novel bilayer rate-controlling model.

    Science.gov (United States)

    Hu, Jing-Xiao; Ran, Jia-Bing; Chen, Si; Shen, Xin-Yu; Tong, Hua

    2015-12-01

    In order to prepare sophisticated biomaterials using a biomimetic approach, a deeper understanding of biomineralization is needed. Of particular importance is the control and regulation of the mineralization process. In this study, a novel bilayer rate-controlling model was designed to investigate the factors potentially influencing mineralization. In the absence of a rate-controlling layer, nano-scale hydroxyapatite (HA) crystallites exhibited a spherical morphology, whereas, in the presence of a rate-controlling layer, HA crystallites were homogeneously dispersed and spindle-like in structure. The mineralization rate had a significant effect on controlling the morphology of crystals. Furthermore, in vitro tests demonstrated that the reaction layer containing spindle-like HA crystallites possessed superior biological properties. These results suggest that a slow mineralization rate is required for controlling the morphology of inorganic crystallites, and consumption by the rate-controlling layer ensured that the ammonia concentration remained low. This study demonstrates that a biomimetic approach can be used to prepare novel biomaterials containing HA crystallites that have different morphologies and biological properties. Copyright © 2015 Elsevier B.V. All rights reserved.

  7. Validation of an All-Pressure Fluid Drop Model: Heptane Fluid Drops in Nitrogen

    Science.gov (United States)

    Harstad, K.; Bellan, J.; Bulzan, Daniel L. (Technical Monitor)

    2000-01-01

    Despite the fact that supercritical fluids occur both in nature and in industrial situations, the fundamentals of their behavior is poorly understood because supercritical fluids combine the characteristics of both liquids and gases, and therefore their behavior is not intuitive. There are several specific reasons for the lack of understanding: First, data from (mostly optical) measurements can be very misleading because regions of high density thus observed are frequently identified with liquids. A common misconception is that if in an experiment one can optically identify "drops" and "ligaments", the observed fluid must be in a liquid state. This inference is incorrect because in fact optical measurements detect any large change (i.e. gradients) in density. Thus, the density ratio may be well below Omicron(10(exp 3)) that characterizes its liquid/gas value, but the measurement will still identify a change in the index of refraction providing that the change is sudden (steep gradients). As shown by simulations of supercritical fluids, under certain conditions the density gradients may remain large during the supercritical binary fluids mixing, thus making them optically identifiable. Therefore, there is no inconsistency between the optical observation of high density regions and the fluids being in a supercritical state. A second misconception is that because a fluid has a liquid-like density, it is appropriate to model it as a liquid. However, such fluids may have liquid-like densities while their transport properties differ from those of a liquid. Considering that the critical pressure of most fuel hydrocarbons used in Diesel and gas turbine engines is in the range of 1.5 - 3 MPa, and the fact that the maximum pressure attained in these engines is about 6 Mps, it is clear that the fuel in the combustion chamber will experience both subcritical and supercritical conditions. Studies of drop behavior over a wide range of pressures were performed in the past

  8. A dynamic neutral fluid model for the PIC scheme

    Science.gov (United States)

    Wu, Alan; Lieberman, Michael; Verboncoeur, John

    2010-11-01

    Fluid diffusion is an important aspect of plasma simulation. A new dynamic model is implemented using the continuity and boundary equations in OOPD1, an object oriented one-dimensional particle-in-cell code developed at UC Berkeley. The model is described and compared with analytical methods given in [1]. A boundary absorption parameter can be adjusted from ideal absorption to ideal reflection. Simulations exhibit good agreement with analytic time dependent solutions for the two ideal cases, as well as steady state solutions for mixed cases. For the next step, fluid sources and sinks due to particle-particle or particle-fluid collisions within the simulation volume and to surface reactions resulting in emission or absorption of fluid species will be implemented. The resulting dynamic interaction between particle and fluid species will be an improvement to the static fluid in the existing code. As the final step in the development, diffusion for multiple fluid species will be implemented. [4pt] [1] M.A. Lieberman and A.J. Lichtenberg, Principles of Plasma Discharges and Materials Processing, 2nd Ed, Wiley, 2005.

  9. Hybrid fluid/kinetic model for parallel heat conduction

    Energy Technology Data Exchange (ETDEWEB)

    Callen, J.D.; Hegna, C.C.; Held, E.D. [Univ. of Wisconsin, Madison, WI (United States)

    1998-12-31

    It is argued that in order to use fluid-like equations to model low frequency ({omega} < {nu}) phenomena such as neoclassical tearing modes in low collisionality ({nu} < {omega}{sub b}) tokamak plasmas, a Chapman-Enskog-like approach is most appropriate for developing an equation for the kinetic distortion (F) of the distribution function whose velocity-space moments lead to the needed fluid moment closure relations. Further, parallel heat conduction in a long collision mean free path regime can be described through a combination of a reduced phase space Chapman-Enskog-like approach for the kinetics and a multiple-time-scale analysis for the fluid and kinetic equations.

  10. Modeling of Dynamic Fluid Forces in Fast Switching Valves

    DEFF Research Database (Denmark)

    Roemer, Daniel Beck; Johansen, Per; Pedersen, Henrik Clemmensen

    2015-01-01

    Switching valves experience opposing fluid forces due to movement of the moving member itself, as the surrounding fluid volume must move to accommodate the movement. This movement-induced fluid force may be divided into three main components; the added mass term, the viscous term and the socalled...... is given using an analytically solvable example, showing the explicit form of the force terms and highlighting the significance of the added mass and history term in certain fast switching valve applications. A general approximate model for arbitrary valve geometries is then proposed with offset...

  11. Dynamics of Lipid Bilayer Vesicles in Viscous Flows

    Science.gov (United States)

    Schwalbe, Jonathan; Vlahovska, Petia; Miksis, Michael J.

    2008-11-01

    An analytical theory is developed to describe the dynamics of a closed lipid bilayer membrane (vesicle) in a general linear viscous flow. The dynamics of the membrane is governed by the Stokes equations in the fluid plus the normal and tangential stress condition along the bilayer interface. The effects of the membrane fluidity, incompressibility and resistance to bending are taken into account. The model is a generalization of the work on planar membranes by Seifert and Langer (Europhys. Lett. vol. 23, 71, 1993), which accounted for the variations in lipid density along both leaflets of the bilayer. Considering a nearly spherical vesicle, a perturbation solution is derived. The leading order analysis results in a nonlinear coupled system of equations for the dynamics of the shape and the mean lipid density difference between the inner and outer monolayer. Multiple solution states are found as a function of viscosity ratio and the monolayer slip coefficient. The dynamics and stability of these solutions is discussed. Comparisons are made to previous works based on the minimal curvature model which did not consider variable lipid density.

  12. Validation of full cavitation model in cryogenic fluids

    Institute of Scientific and Technical Information of China (English)

    CAO XiaoLi; ZHANG XiaoBin; QIU LiMin; GAN ZhiHua

    2009-01-01

    Numerical simulation of cavitation in cryogenic fluids is important in improving the stable operation of he propulsion system in liquid-fuel rocket. It also represents a broader class of problems where the fluid is operating close to its critical point and the thermal effects of cavitation are pronounced. The present article focuses on simulating cryogenic cavitation by implementing the "full cavitation model", coupled with energy equation, in conjunction with iteraUve update of the real fluid properties at local temperatures. Steady state computations are then conducted on hydrofoil and ogive in liquid nitrogen and hydrogen respectively, based on which we explore the mechanism of cavitation with thermal ef-fects. Comprehensive comparisons between the simulation results and experimental data as well as previous computations by other researchers validate the full cavitation model in cryogenic fluids. The sensitivity of cavity length to cavitation number is also examined.

  13. Fluid flow modeling in complex areas*, **

    Directory of Open Access Journals (Sweden)

    Poullet Pascal

    2012-04-01

    Full Text Available We show first results of 3D simulation of sea currents in a realistic context. We use the full Navier–Stokes equations for incompressible viscous fluid. The problem is solved using a second order incremental projection method associated with the finite volume of the staggered (MAC scheme for the spatial discretization. After validation on classical cases, it is used in a numerical simulation of the Pointe à Pitre harbour area. The use of the fictious domain method permits us to take into account the complexity of bathymetric data and allows us to work with regular meshes and thus preserves the efficiency essential for a 3D code. Dans cette étude, nous présentons les premiers résultats de simulation d’un écoulement d’un fluide incompressible visqueux dans un contexte environnemental réel. L’approche utilisée utilise une méthode de domaines fictifs pour une prise en compte d’un domaine physique tridimensionnel très irrégulier. Le schéma numérique combine un schéma de projection incrémentale et des volumes finis utilisant des volumes de contrôle adaptés à un maillage décalé. Les tests de validation sont menés pour les cas tests de la cavité double entraînée ainsi que l’écoulement dans un canal avec un obstacle placé de manière asymmétrique.

  14. A computational model for doctoring fluid films in gravure printing

    Science.gov (United States)

    Hariprasad, Daniel S.; Grau, Gerd; Schunk, P. Randall; Tjiptowidjojo, Kristianto

    2016-04-01

    The wiping, or doctoring, process in gravure printing presents a fundamental barrier to resolving the micron-sized features desired in printed electronics applications. This barrier starts with the residual fluid film left behind after wiping, and its importance grows as feature sizes are reduced, especially as the feature size approaches the thickness of the residual fluid film. In this work, various mechanical complexities are considered in a computational model developed to predict the residual fluid film thickness. Lubrication models alone are inadequate, and deformation of the doctor blade body together with elastohydrodynamic lubrication must be considered to make the model predictive of experimental trends. Moreover, model results demonstrate that the particular form of the wetted region of the blade has a significant impact on the model's ability to reproduce experimental measurements.

  15. The development of a tissue-engineered tracheobronchial epithelial model using a bilayered collagen-hyaluronate scaffold.

    Science.gov (United States)

    O'Leary, Cian; Cavanagh, Brenton; Unger, Ronald E; Kirkpatrick, C James; O'Dea, Shirley; O'Brien, Fergal J; Cryan, Sally-Ann

    2016-04-01

    Today, chronic respiratory disease is one of the leading causes of mortality globally. Epithelial dysfunction can play a central role in its pathophysiology. The development of physiologically-representative in vitro model systems using tissue-engineered constructs might improve our understanding of epithelial tissue and disease. This study sought to engineer a bilayered collagen-hyaluronate (CHyA-B) scaffold for the development of a physiologically-representative 3D in vitro tracheobronchial epithelial co-culture model. CHyA-B scaffolds were fabricated by integrating a thin film top-layer into a porous sub-layer with lyophilisation. The film layer firmly connected to the sub-layer with delamination occurring at stresses of 12-15 kPa. Crosslinked scaffolds had a compressive modulus of 1.9 kPa and mean pore diameters of 70 μm and 80 μm, depending on the freezing temperature. Histological analysis showed that the Calu-3 bronchial epithelial cell line attached and grew on CHyA-B with adoption of an epithelial monolayer on the film layer. Immunofluorescence and qRT-PCR studies demonstrated that the CHyA-B scaffolds facilitated Calu-3 cell differentiation, with enhanced mucin expression, increased ciliation and the formation of intercellular tight junctions. Co-culture of Calu-3 cells with Wi38 lung fibroblasts was achieved on the scaffold to create a submucosal tissue analogue of the upper respiratory tract, validating CHyA-B as a platform to support co-culture and cellular organisation reminiscent of in vivo tissue architecture. In summary, this study has demonstrated that CHyA-B is a promising tool for the development of novel 3D tracheobronchial co-culture in vitro models with the potential to unravel new pathways in drug discovery and drug delivery.

  16. Meteorological fluid dynamics asymptotic modelling, stability and chaotic atmospheric motion

    CERN Document Server

    Zeytounian, Radyadour K

    1991-01-01

    The author considers meteorology as a part of fluid dynamics. He tries to derive the properties of atmospheric flows from a rational analysis of the Navier-Stokes equations, at the same time analyzing various types of initial and boundary problems. This approach to simulate nature by models from fluid dynamics will be of interest to both scientists and students of physics and theoretical meteorology.

  17. A Fluid Mud Transport Model in Multi-Dimensions

    Science.gov (United States)

    2007-01-01

    A Fluid Mud Transport Model in Multi-dimensions Tian-Jian Hsu Civil and Coastal Engineering, University of Florida, Gainesville, FL 32608 phone...NAME(S) AND ADDRESS(ES) University of Florida, Civil and Coastal Engineering,Gainesville,FL,32608 8. PERFORMING ORGANIZATION REPORT NUMBER 9...sediment transport processes are carried out in several directions: Extend to 2D and incorporate Bingham rheology : The previous 1DV fluid mud

  18. Numerical Modeling of Fluid Transient in Cryogenic Fluid Network of Rocket Propulsion System

    Science.gov (United States)

    Majumdar, Alok; Flachbart, Robin

    2003-01-01

    Fluid transients, also known as water hammer, can have a significant impact on the design and operation of both spacecraft and launch vehicles propulsion systems. These transients often occur at system activation and shut down. For ground safety reasons, many spacecrafts are launched with the propellant lines dry. These lines are often evacuated by the time the spacecraft reaches orbit. When the propellant isolation valve opens during propulsion system activation, propellant rushes into lines creating a pressure surge. During propellant system shutdown, a pressure surge is created due to sudden closure of a valve. During both activation and shutdown, pressure surges must be predicted accurately to ensure structural integrity of the propulsion system fluid network. The method of characteristics is the most widely used method of calculating fluid transients in pipeline [ 1,2]. The method of characteristics, however, has limited applications in calculating flow distribution in complex flow circuits with phase change, heat transfer and rotational effects. A robust cryogenic propulsion system analyzer must have the capability to handle phase change, heat transfer, chemical reaction, rotational effects and fluid transients in conjunction with subsystem flow model for pumps, valves and various pipe fittings. In recent years, such a task has been undertaken at Marshall Space Flight Center with the development of the Generalized Fluid System Simulation Program (GFSSP), which is based on finite volume method in fluid network [3]. GFSSP has been extensively verified and validated by comparing its predictions with test data and other numerical methods for various applications such as internal flow of turbo-pump [4], propellant tank pressurization [5,6], chilldown of cryogenic transfer line [7] and squeeze film damper rotordynamics [8]. The purpose of the present paper is to investigate the applicability of the finite volume method to predict fluid transient in cryogenic flow

  19. Numerical modelling of structural controls on fluid flow and mineralization

    Directory of Open Access Journals (Sweden)

    Yanhua Zhang

    2011-07-01

    Full Text Available This paper presents the results of a set of numerical models focussing on structural controls on hydrothermal mineralization. We first give an overview of natural phenomena of structurally-controlled ore formation and the background theory and mechanisms for such controls. We then provide the results of a group of simple 2D numerical models validated through comparison with Cu-vein structure observed near the Shilu Copper deposit (Yangchun, Guangdong Province, China and finally a case study of 3D numerical modelling applied to the Hodgkinson Province in North Queensland (Australia. Two modelling approaches, discrete deformation modelling and continuum coupled deformation and fluid flow modelling, are involved. The 2D model-derived patterns are remarkably consistent with the Cu-vein structure from the Shilu Copper deposit, and show that both modelling approaches can realistically simulate the mechanical behaviours of shear and dilatant fractures. The continuum coupled deformation and fluid flow model indicates that pattern of the Cu-veins near the Shilu deposit is the result of shear strain localization, development of dilation and fluid focussing into the dilatant fracture segments. The 3D case-study models (with deformation and fluid flow coupling on the Hodgkinson Province generated a number of potential gold mineralization targets.

  20. Modeling of Phase Equilibria Containing Associating Fluids

    DEFF Research Database (Denmark)

    Derawi, Samer; Kontogeorgis, Georgios

    glycol + heptane, methylcyclohexane, hexane, propylene glycol + heptane, diethylene glycol + heptane, triethylene glycol + heptane, and tetraethylene glycol + heptane. The data obtained were correlated with the NRTL model and two different versions of the UNIQUAC equation. The NRTL model and one...

  1. Microfluidic flow switching design using volume of fluid model.

    Science.gov (United States)

    Chein, Reiyu; Tsai, S H

    2004-03-01

    In this study, a volume of fluid (VOF) model was employed for microfluidic switch design. The VOF model validity in predicting the interface between fluid streams with different viscosities co-flowing in a microchannel was first verified by experimental observation. It was then extended to microfluidic flow switch design. Two specific flow switches, one with a guided fluid to one of five desired outlet ports, and another with a guided fluid flows into one, two, or three outlet ports equally distributed along the outlet channel of a Y-shaped channel. The flow switching was achieved by controlling the flow rate ratios between tested and buffer fluids. The numerical results showed that the VOF model could successfully predict the flow switching phenomena in these flow switches. The numerical results also showed that the flow rate ratio required for flow switching depends on the viscosity ratio between the tested and buffer fluids. The numerical simulation was verified by experimental study and the agreement was good.

  2. A Generalized Fluid System Simulation Program to Model Flow Distribution in Fluid Networks

    Science.gov (United States)

    Majumdar, Alok; Bailey, John W.; Schallhorn, Paul; Steadman, Todd

    1998-01-01

    This paper describes a general purpose computer program for analyzing steady state and transient flow in a complex network. The program is capable of modeling phase changes, compressibility, mixture thermodynamics and external body forces such as gravity and centrifugal. The program's preprocessor allows the user to interactively develop a fluid network simulation consisting of nodes and branches. Mass, energy and specie conservation equations are solved at the nodes; the momentum conservation equations are solved in the branches. The program contains subroutines for computing "real fluid" thermodynamic and thermophysical properties for 33 fluids. The fluids are: helium, methane, neon, nitrogen, carbon monoxide, oxygen, argon, carbon dioxide, fluorine, hydrogen, parahydrogen, water, kerosene (RP-1), isobutane, butane, deuterium, ethane, ethylene, hydrogen sulfide, krypton, propane, xenon, R-11, R-12, R-22, R-32, R-123, R-124, R-125, R-134A, R-152A, nitrogen trifluoride and ammonia. The program also provides the options of using any incompressible fluid with constant density and viscosity or ideal gas. Seventeen different resistance/source options are provided for modeling momentum sources or sinks in the branches. These options include: pipe flow, flow through a restriction, non-circular duct, pipe flow with entrance and/or exit losses, thin sharp orifice, thick orifice, square edge reduction, square edge expansion, rotating annular duct, rotating radial duct, labyrinth seal, parallel plates, common fittings and valves, pump characteristics, pump power, valve with a given loss coefficient, and a Joule-Thompson device. The system of equations describing the fluid network is solved by a hybrid numerical method that is a combination of the Newton-Raphson and successive substitution methods. This paper also illustrates the application and verification of the code by comparison with Hardy Cross method for steady state flow and analytical solution for unsteady flow.

  3. A Mathematical Model for Swallowing of Concentrated Fluids in Oesophagus

    Directory of Open Access Journals (Sweden)

    S. K. Pandey

    2011-01-01

    Full Text Available This model investigates particularly the impact of an integral and a non-integral number of waves on the swallowing of food stuff such as jelly, tomato puree, soup, concentrated fruits juices and honey transported peristaltically through the oesophagus. The fluid is considered as a Casson fluid. Emphasis is on the study of the dependence of local pressure distribution on space and time. Mechanical efficiency, reflux limit and trapping are also discussed. The effect of Casson fluid vis-à-vis Newtonian fluid is investigated analytically and numerically too. The result is physically interpreted as that the oesophagus makes more efforts to swallow fluids with higher concentration. It is observed that the pressure is uniformly distributed when an integral number of waves is there in the oesophagus; but it is non-uniform when a non-integral number of waves is present therein. It is further observed that as the plug flow region widens, the pressure difference increases, which indicates that the averaged flow rate will reduce for a Casson fluid. It is also concluded that Casson fluids are more prone to reflux.

  4. Biotechnology Applications of Tethered Lipid Bilayer Membranes

    Directory of Open Access Journals (Sweden)

    Joshua A. Jackman

    2012-12-01

    Full Text Available The importance of cell membranes in biological systems has prompted the development of model membrane platforms that recapitulate fundamental aspects of membrane biology, especially the lipid bilayer environment. Tethered lipid bilayers represent one of the most promising classes of model membranes and are based on the immobilization of a planar lipid bilayer on a solid support that enables characterization by a wide range of surface-sensitive analytical techniques. Moreover, as the result of molecular engineering inspired by biology, tethered bilayers are increasingly able to mimic fundamental properties of natural cell membranes, including fluidity, electrical sealing and hosting transmembrane proteins. At the same time, new methods have been employed to improve the durability of tethered bilayers, with shelf-lives now reaching the order of weeks and months. Taken together, the capabilities of tethered lipid bilayers have opened the door to biotechnology applications in healthcare, environmental monitoring and energy storage. In this review, several examples of such applications are presented. Beyond the particulars of each example, the focus of this review is on the emerging design and characterization strategies that made these applications possible. By drawing connections between these strategies and promising research results, future opportunities for tethered lipid bilayers within the biotechnology field are discussed.

  5. Steroid hormones partition to distinct sites in a model membrane bilayer: direct demonstration by small-angle X-ray diffraction.

    Science.gov (United States)

    Golden, G A; Rubin, R T; Mason, R P

    1998-01-19

    The classical, genomic mechanisms of steroid hormone action cannot account for their rapid cellular effects. Membrane-bound steroid receptors have been partially characterized, but many rapid steroid effects occur in the absence of steroid-protein binding. Although it has been proposed that these effects could be due to steroid-induced biophysical alterations of the cell membrane, only indirect supporting evidence for this hypothesis has been forthcoming. In the present study, the ability of cortisol and estradiol (E2), natural steroids of different lipophilicity, to induce alterations in a model membrane (lecithin) bilayer was examined directly by small-angle X-ray diffraction under physiologic-like conditions. Within minutes, both steroids partitioned to distinct sites in the membrane. With increasing membrane cholesterol content, cortisol was displaced toward the polar headgroup region of the phospholipid bilayer, whereas E2 was displaced in the opposite direction, toward the nonpolar hydrocarbon core. Membrane-based partition coefficients (Kp[mem]) for both steroids (>100:1) were highest at those cholesterol concentrations that displaced the steroids toward the headgroup region (high cholesterol for cortisol; low for E2). Both steroids, when located in the headgroup region, increased overall bilayer width by 3-4 A, a change that could modulate the structure and function of integral membrane proteins independent from steroid effects on the genome.

  6. Scattering Density Profile Model of POPG Bilayers as Determined by Molecular Dynamics Simulations and Small-Angle Neutron and X-ray Scattering Experiments

    Energy Technology Data Exchange (ETDEWEB)

    Kucerka, Norbert [Canadian Neutron Beam Centre and Comelius University (Slovakia); Holland, B [University of Guelph; Gray, C.G [University of Guelph; Tomberli, B [Brandon University; Katsaras, John [ORNL

    2012-01-01

    We combine molecular dynamics (MD) simulations and experiment, both small-angle neutron (SANS) and small-angle X-ray scattering (SAXS), to determine the precise structure of bilayers composed of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylglycerol (POPG), a lipid commonly encountered in bacterial membranes. Experiment and simulation are used to develop a one-dimensional scattering density profile (SDP) model suitable for the analysis of experimental data. The joint refinement of such data (i.e., SANS and SAXS) results in the area per lipid that is then used in the fixed-area simulations. In the final step, the direct comparison of simulated-to-experimental data gives rise to the detailed structure of POPG bilayers. From these studies we conclude that POPG s molecular area is 66.0 +/- 1.3 ^2, its overall bilayer thickness is 36.7 +/- 0.7 , and its hydrocarbon region thickness is 27.9 ( 0.6 , assuming a simulated value of 1203 ^3 for the total lipid volume.

  7. Bone regeneration of hydroxyapatite/alumina bilayered scaffold with 3 mm passage-like medullary canal in canine tibia model.

    Science.gov (United States)

    Kim, Jong Min; Son, Jun Sik; Kang, Seong Soo; Kim, Gonhyung; Choi, Seok Hwa

    2015-01-01

    The aim of this study was to evaluate the bone regeneration of hydroxyapatite (HA)/alumina bilayered scaffold with a 3 mm passage-like medullary canal in a beagle tibia model. A porous HA/alumina scaffold was fabricated using a polymeric template-coating technique. HA/alumina scaffold dimensions were 10 mm in outer diameter, 20 mm in length, and with either a 3 mm passage or no passage. A 20 mm segmental defect was induced using an oscillating saw through the diaphysis of the beagle tibia. The defects of six beagles were filled with HA/alumina bilayered scaffolds with a 3 mm passage or without. The segmental defect was fixated using one bone plate and six screws. Bone regeneration within the HA/alumina scaffolds was observed at eight weeks after implantation. The evaluation of bone regeneration within the scaffolds after implantation in a beagle tibia was performed using radiography, computerized tomography (CT), micro-CT, and fluorescence microscopy. New bone successfully formed in the tibia defects treated with 3 mm passage HA/alumina scaffolds compared to without-passage HA/alumina scaffolds. It was concluded that the HA/alumina bilayered scaffold with 3 mm passage-like medullary canal was instrumental in inducing host-scaffold engraftment of the defect as well as distributing the newly formed bone throughout the scaffold at 8 weeks after implantation.

  8. Bone Regeneration of Hydroxyapatite/Alumina Bilayered Scaffold with 3 mm Passage-Like Medullary Canal in Canine Tibia Model

    Directory of Open Access Journals (Sweden)

    Jong Min Kim

    2015-01-01

    Full Text Available The aim of this study was to evaluate the bone regeneration of hydroxyapatite (HA/alumina bilayered scaffold with a 3 mm passage-like medullary canal in a beagle tibia model. A porous HA/alumina scaffold was fabricated using a polymeric template-coating technique. HA/alumina scaffold dimensions were 10 mm in outer diameter, 20 mm in length, and with either a 3 mm passage or no passage. A 20 mm segmental defect was induced using an oscillating saw through the diaphysis of the beagle tibia. The defects of six beagles were filled with HA/alumina bilayered scaffolds with a 3 mm passage or without. The segmental defect was fixated using one bone plate and six screws. Bone regeneration within the HA/alumina scaffolds was observed at eight weeks after implantation. The evaluation of bone regeneration within the scaffolds after implantation in a beagle tibia was performed using radiography, computerized tomography (CT, micro-CT, and fluorescence microscopy. New bone successfully formed in the tibia defects treated with 3 mm passage HA/alumina scaffolds compared to without-passage HA/alumina scaffolds. It was concluded that the HA/alumina bilayered scaffold with 3 mm passage-like medullary canal was instrumental in inducing host-scaffold engraftment of the defect as well as distributing the newly formed bone throughout the scaffold at 8 weeks after implantation.

  9. Axially Symmetric Cosmological Mesonic Stiff Fluid Models in Lyra's Geometry

    CERN Document Server

    Gad, Ragab M

    2009-01-01

    In this paper, we obtained a new class of axially symmetric cosmological mesonic stiff fluid models in the context of Lyra's geometry. Expressions for the energy, pressure and the massless scalar field are derived by considering the time dependent displacement field. We found that the mesonic scalar field depends on only $t$ coordinate. Some physical properties of the obtained models are discussed.

  10. A 2-Dimensional Fluid Model for an Argon Rf Discharge

    NARCIS (Netherlands)

    Passchier, J. D. P.; W. J. Goedheer,

    1993-01-01

    A fluid model for an argon rf discharge in a cylindrical discharge chamber is presented. The model contains the particle balances for electrons and ions and the electron energy balance. A nonzero autobias voltage is obtained by imposing the condition that the time-averaged current toward the powered

  11. Modelling Emission from Building Materials with Computational Fluid Dynamics

    DEFF Research Database (Denmark)

    Topp, Claus; Nielsen, Peter V.; Heiselberg, Per

    This paper presents a numerical model that by means of computational fluid dynamics (CFD) is capable of dealing with both pollutant transport across the boundary layer and internal diffusion in the source without prior knowledge of which is the limiting process. The model provides the concentration...

  12. A review on solar wind modeling: kinetic and fluid aspects

    CERN Document Server

    Echim, Marius; Lie-Svendsen, Oystein

    2013-01-01

    We review the main advantages and limitations of the kinetic exospheric and fluid models of the solar wind (SW). We discuss the hydrostatic model imagined by Chapman, the first supersonic hydrodynamic models published by Parker and the first generation subsonic kinetic model proposed by Chamberlain. It is shown that a correct estimation of the electric field as in the second generation kinetic exospheric models developed by Lemaire and Scherer, provides a supersonic expansion of the corona, reconciling the hydrodynamic and the kinetic approach. The third generation kinetic exospheric models considers kappa velocity distribution function (VDF) instead of a Maxwellian at the exobase and in addition they treat a non-monotonic variation of the electric potential with the radial distance; the fourth generation exospheric models include Coulomb collisions based on the Fokker--Planck collision term. Multi-fluid models of the solar wind provide a coarse grained description and reproduce with success the spatio-tempor...

  13. Dynamic Modeling of ThermoFluid Systems

    DEFF Research Database (Denmark)

    Jensen, Jakob Munch

    2003-01-01

    formulated. The different models deviate with respect to the detail¿s included and calculation time in connection with simulation. The models have been implemented in a new library named ThermoTwoPhase to the programming language Modelica. A test rig has been built with an evaporator instrumented in a way...

  14. Modelling vaporous cavitation on fluid transients

    CERN Document Server

    Shu, Jian-Jun

    2014-01-01

    A comprehensive study of the problem of modelling vaporous cavitation in transmission lines is presented. The two-phase homogeneous equilibrium vaporous cavitation model which has been developed is compared with the conventional column separation model. The latter predicts unrealistically high pressure spikes because of a conflict arising from the prediction of negative cavity sizes if the pressure is not permitted to fall below the vapour pressure, or the prediction of negative absolute pressures if the cavity size remains positive. This is verified by a comparison of predictions with previously published experimental results on upstream, midstream and downstream cavitation. The new model has been extended to include frequency-dependent friction. The characteristics predicted by the frequency-dependent friction model show close correspondence with experimental data.

  15. Multi-scale modeling of shape distortions during sintering of bi-layers

    DEFF Research Database (Denmark)

    Tadesse Molla, Tesfaye; Bjørk, Rasmus; Olevsky, Eugene;

    2014-01-01

    Models for deformational behaviors of porous bodies during sintering often rely on limited number of internal variables as they are formulated based on simplified or ideal microstructures. Considering realistic microstructures can improve the predictive capabilities of the already established the...

  16. Salt tectonics and shallow subseafloor fluid convection: models of coupled fluid-heat-salt transport

    Science.gov (United States)

    Wilson, A.; Ruppel, C.

    2007-01-01

    Thermohaline convection associated with salt domes has the potential to drive significant fluid flow and mass and heat transport in continental margins, but previous studies of fluid flow associated with salt structures have focused on continental settings or deep flow systems of importance to petroleum exploration. Motivated by recent geophysical and geochemical observations that suggest a convective pattern to near-seafloor pore fluid flow in the northern Gulf of Mexico (GoMex), we devise numerical models that fully couple thermal and chemical processes to quantify the effects of salt geometry and seafloor relief on fluid flow beneath the seafloor. Steady-state models that ignore halite dissolution demonstrate that seafloor relief plays an important role in the evolution of shallow geothermal convection cells and that salt at depth can contribute a thermal component to this convection. The inclusion of faults causes significant, but highly localized, increases in flow rates at seafloor discharge zones. Transient models that include halite dissolution show the evolution of flow during brine formation from early salt-driven convection to later geothermal convection, characteristics of which are controlled by the interplay of seafloor relief and salt geometry. Predicted flow rates are on the order of a few millimeters per year or less for homogeneous sediments with a permeability of 10−15 m2, comparable to compaction-driven flow rates. Sediment permeabilities likely fall below 10−15 m2 at depth in the GoMex basin, but such thermohaline convection can drive pervasive mass transport across the seafloor, affecting sediment diagenesis in shallow sediments. In more permeable settings, such flow could affect methane hydrate stability, seafloor chemosynthetic communities, and the longevity of fluid seeps.

  17. Fluid-percussion–induced traumatic brain injury model in rats

    OpenAIRE

    2010-01-01

    Traumatic brain injury (TBI) is a major cause of mortality and morbidity. Various attempts have been made to replicate clinical TBI using animal models. The fluid-percussion model (FP) is one of the oldest and most commonly used models of experimentally induced TBI. Both central (CFP) and lateral (LFP) variations of the model have been used. Developed initially for use in larger species, the standard FP device was adapted more than 20 years ago to induce consistent degrees of brain injury in ...

  18. Hydromechanical Modeling of Fluid Flow in the Lower Crust

    Science.gov (United States)

    Connolly, J.

    2011-12-01

    The lower crust lies within an ambiguous rheological regime between the brittle upper crust and ductile sub-lithospheric mantle. This ambiguity has allowed two schools of thought to develop concerning the nature of fluid flow in the lower crust. The classical school holds that lower crustal rocks are inviscid and that any fluid generated by metamorphic devolatilization is squeezed out of rocks as rapidly as it is produced. According to this school, permeability is a dynamic property and fluid flow is upward. In contrast, the modern school uses concepts from upper crustal hydrology that presume implicitly, if not explicitly, that rocks are rigid or, at most, brittle. For the modern school, the details of crustal permeability determine fluid flow and as these details are poorly known almost anything is possible. Reality, to the extent that it is reflected by inference from field studies, offers some support to both schools. In particular, evidence of significant lateral and channelized fluid flow are consistent with flow in rigid media, while evidence for short (104 - 105 y) grain-scale fluid-rock interaction during much longer metamorphic events, suggests that reaction-generated grain-scale permeability is sealed rapidly by compaction; a phenomenon that is also essential to prevent extensive retrograde metamorphism. These observations provide a compelling argument for recognizing in conceptual models of lower crustal fluid flow that rocks are neither inviscid nor rigid, but compact by viscous mechanisms on a finite time-scale. This presentation will review the principle consequences of, and obstacles to, incorporating compaction in such models. The role of viscous compaction in the lower crust is extraordinarily uncertain, but ignoring this uncertainty in models of lower crustal fluid flow does not make the models any more certain. Models inevitably invoke an initial steady state hydraulic regime. This initial steady state is critical to model outcomes because it

  19. Modeling of Non-Isothermal Cryogenic Fluid Sloshing

    Science.gov (United States)

    Agui, Juan H.; Moder, Jeffrey P.

    2015-01-01

    A computational fluid dynamic model was used to simulate the thermal destratification in an upright self-pressurized cryostat approximately half-filled with liquid nitrogen and subjected to forced sinusoidal lateral shaking. A full three-dimensional computational grid was used to model the tank dynamics, fluid flow and thermodynamics using the ANSYS Fluent code. A non-inertial grid was used which required the addition of momentum and energy source terms to account for the inertial forces, energy transfer and wall reaction forces produced by the shaken tank. The kinetics-based Schrage mass transfer model provided the interfacial mass transfer due to evaporation and condensation at the sloshing interface. The dynamic behavior of the sloshing interface, its amplitude and transition to different wave modes, provided insight into the fluid process at the interface. The tank pressure evolution and temperature profiles compared relatively well with the shaken cryostat experimental test data provided by the Centre National D'Etudes Spatiales.

  20. Reduced order modeling of some fluid flows of industrial interest

    Energy Technology Data Exchange (ETDEWEB)

    Alonso, D; Terragni, F; Velazquez, A; Vega, J M, E-mail: josemanuel.vega@upm.es [E.T.S.I. Aeronauticos, Universidad Politecnica de Madrid, 28040 Madrid (Spain)

    2012-06-01

    Some basic ideas are presented for the construction of robust, computationally efficient reduced order models amenable to be used in industrial environments, combined with somewhat rough computational fluid dynamics solvers. These ideas result from a critical review of the basic principles of proper orthogonal decomposition-based reduced order modeling of both steady and unsteady fluid flows. In particular, the extent to which some artifacts of the computational fluid dynamics solvers can be ignored is addressed, which opens up the possibility of obtaining quite flexible reduced order models. The methods are illustrated with the steady aerodynamic flow around a horizontal tail plane of a commercial aircraft in transonic conditions, and the unsteady lid-driven cavity problem. In both cases, the approximations are fairly good, thus reducing the computational cost by a significant factor. (review)

  1. Computational fluid dynamics investigation of turbulence models for non-newtonian fluid flow in anaerobic digesters.

    Science.gov (United States)

    Wu, Binxin

    2010-12-01

    In this paper, 12 turbulence models for single-phase non-newtonian fluid flow in a pipe are evaluated by comparing the frictional pressure drops obtained from computational fluid dynamics (CFD) with those from three friction factor correlations. The turbulence models studied are (1) three high-Reynolds-number k-ε models, (2) six low-Reynolds-number k-ε models, (3) two k-ω models, and (4) the Reynolds stress model. The simulation results indicate that the Chang-Hsieh-Chen version of the low-Reynolds-number k-ε model performs better than the other models in predicting the frictional pressure drops while the standard k-ω model has an acceptable accuracy and a low computing cost. In the model applications, CFD simulation of mixing in a full-scale anaerobic digester with pumped circulation is performed to propose an improvement in the effective mixing standards recommended by the U.S. EPA based on the effect of rheology on the flow fields. Characterization of the velocity gradient is conducted to quantify the growth or breakage of an assumed floc size. Placement of two discharge nozzles in the digester is analyzed to show that spacing two nozzles 180° apart with each one discharging at an angle of 45° off the wall is the most efficient. Moreover, the similarity rules of geometry and mixing energy are checked for scaling up the digester.

  2. Bursting Bubbles and Bilayers

    Directory of Open Access Journals (Sweden)

    Steven P. Wrenn, Stephen M. Dicker, Eleanor F. Small, Nily R. Dan, Michał Mleczko, Georg Schmitz, Peter A. Lewin

    2012-01-01

    Full Text Available This paper discusses various interactions between ultrasound, phospholipid monolayer-coated gas bubbles, phospholipid bilayer vesicles, and cells. The paper begins with a review of microbubble physics models, developed to describe microbubble dynamic behavior in the presence of ultrasound, and follows this with a discussion of how such models can be used to predict inertial cavitation profiles. Predicted sensitivities of inertial cavitation to changes in the values of membrane properties, including surface tension, surface dilatational viscosity, and area expansion modulus, indicate that area expansion modulus exerts the greatest relative influence on inertial cavitation. Accordingly, the theoretical dependence of area expansion modulus on chemical composition - in particular, poly (ethylene glyclol (PEG - is reviewed, and predictions of inertial cavitation for different PEG molecular weights and compositions are compared with experiment. Noteworthy is the predicted dependence, or lack thereof, of inertial cavitation on PEG molecular weight and mole fraction. Specifically, inertial cavitation is predicted to be independent of PEG molecular weight and mole fraction in the so-called mushroom regime. In the “brush” regime, however, inertial cavitation is predicted to increase with PEG mole fraction but to decrease (to the inverse 3/5 power with PEG molecular weight. While excellent agreement between experiment and theory can be achieved, it is shown that the calculated inertial cavitation profiles depend strongly on the criterion used to predict inertial cavitation. This is followed by a discussion of nesting microbubbles inside the aqueous core of microcapsules and how this significantly increases the inertial cavitation threshold. Nesting thus offers a means for avoiding unwanted inertial cavitation and cell death during imaging and other applications such as sonoporation. A review of putative sonoporation mechanisms is then presented

  3. Computational modeling of glow discharge-induced fluid dynamics

    Science.gov (United States)

    Jayaraman, Balaji

    Glow discharge at atmospheric pressure using a dielectric barrier discharge can induce fluid flow and operate as an actuator for flow control. The largely isothermal surface plasma generation realized above can modify the near-wall flow structure by means of Lorentzian collisions between the ionized fluid and the neutral fluid. Such an actuator has advantages of no moving parts, performance at atmospheric conditions and devising complex control strategies through the applied voltage. However, the mechanism of the momentum coupling between the plasma and the fluid flow is not yet adequately understood. In the present work, a modeling framework is presented to simulate athermal, non-equilibrium plasma discharges in conjunction with low Mach number fluid dynamics at atmospheric pressure. The plasma and fluid species are treated as a two-fluid system exhibiting a few decades of length and time scales. The effect of the plasma dynamics on the fluid dynamics is devised via a body force treatment in the Navier-Stokes equations. Two different approaches of different degrees of fidelity are presented for modeling the plasma dynamics. The first approach, a phenomenological model, is based on a linearized force distribution approximating the discharge structure, and utilizing experimental guidance to deduce the empirical constants. A high fidelity approach is to model the plasma dynamics in a self-consistent manner using a first principle-based hydrodynamic plasma model. The atmospheric pressure regime of interest here enables us to employ local equilibrium assumptions, signifying efficient collisional energy exchange as against thermal heating from inelastic collision processes. The time scale ratios between convection, diffusion, and reaction/ionization mechanisms are O(107), making the system computationally stiff. To handle the stiffness, a sequential finite-volume operator-splitting algorithm capable of conserving space charge is developed; the approach can handle time

  4. Osteochondral tissue regeneration using a bilayered composite hydrogel with modulating dual growth factor release kinetics in a rabbit model

    NARCIS (Netherlands)

    Kim, K.; Lam, J.; Lu, S.; Spicer, P.P.; Lueckgen, A.; Tabata, Y.; Wong, M.E.; Jansen, J.A.; Mikos, A.G.; Kasper, F.K.

    2013-01-01

    Biodegradable oligo(poly(ethylene glycol) fumarate) (OPF) composite hydrogels have been investigated for the delivery of growth factors (GFs) with the aid of gelatin microparticles (GMPs) and stem cell populations for osteochondral tissue regeneration. In this study, a bilayered OPF composite hydrog

  5. Seismicity and fluid injections: numerical modelling of fault activation

    Science.gov (United States)

    Murphy, S.; O'Brien, G.; Bean, C.; McCloskey, J.; Nalbant, S.

    2012-04-01

    Injection of fluid into the subsurface is a common technique and is used to optimise returns from hydrocarbon plays (e.g. enhanced oil recovery, hydrofacturing of shales) and geothermal sites as well as for the sequestering carbon dioxide. While it is well understood that stress perturbations caused by fluid injections can induce/trigger earthquakes; the modelling of such hazard is still in its infancy. By combining fluid flow and seismicity simulations we have created a numerical model for investigating induced seismicity over large time periods so that we might examine the role of operational and geological factors in seismogenesis around a sub-surface fluid injection. In our model, fluid injection is simulated using pore fluid movement throughout a permeable layer from a high-pressure point source using a lattice Boltzmann scheme. We can accommodate complicated geological structures in our simulations. Seismicity is modelled using a quasi-dynamic relationship between stress and slip coupled with a rate-and state friction law. By spatially varying the frictional parameters, the model can reproduce both seismic and aseismic slip. Static stress perturbations (due to either to fault cells slipping or fluid injection) are calculated using analytical solutions for slip dislocations/pressure changes in an elastic half space. An adaptive time step is used in order to increase computational efficiency and thus allow us to model hundreds of years of seismicity. As a case study, we investigate the role that relative fault - injection location plays in seismic activity. To do this we created three synthetic catalogues with only the relative location of the fault from the point of injection varying between the models. In our control model there is no injection meaning it contains only tectonically triggered events. In the other two catalogues, the injection site is placed below and adjacent to the fault respectively. The injection itself is into a permeable thin planar layer

  6. Progress in modeling of fluid flows in crystal growth processes

    Institute of Scientific and Technical Information of China (English)

    Qisheng Chen; Yanni Jiang; Junyi Yan; Ming Qin

    2008-01-01

    Modeling of fluid flows in crystal growth processes has become an important research area in theoretical and applied mechanics.Most crystal growth processes involve fluid flows,such as flows in the melt,solution or vapor.Theoretical modeling has played an important role in developing technologies used for growing semiconductor crystals for high performance electronic and optoelectronic devices.The application of devices requires large diameter crystals with a high degree of crystallographic perfection,low defect density and uniform dopant distribution.In this article,the flow models developed in modeling of the crystal growth processes such as Czochralski,ammono-thermal and physical vapor transport methods are reviewed.In the Czochralski growth modeling,the flow models for thermocapillary flow,turbulent flow and MHD flow have been developed.In the ammonothermal growth modeling,the buoyancy and porous media flow models have been developed based on a single-domain and continuum approach for the composite fluid-porous layer systems.In the physical vapor transport growth modeling,the Stefan flow model has been proposed based on the flow-kinetics theory for the vapor growth.In addition,perspectives for future studies on crystal growth modeling are proposed.

  7. A numerical model for dynamic crustal-scale fluid flow

    Science.gov (United States)

    Sachau, Till; Bons, Paul; Gomez-Rivas, Enrique; Koehn, Daniel

    2015-04-01

    Fluid flow in the crust is often envisaged and modeled as continuous, yet minimal flow, which occurs over large geological times. This is a suitable approximation for flow as long as it is solely controlled by the matrix permeability of rocks, which in turn is controlled by viscous compaction of the pore space. However, strong evidence (hydrothermal veins and ore deposits) exists that a significant part of fluid flow in the crust occurs strongly localized in both space and time, controlled by the opening and sealing of hydrofractures. We developed, tested and applied a novel computer code, which considers this dynamic behavior and couples it with steady, Darcian flow controlled by the matrix permeability. In this dual-porosity model, fractures open depending on the fluid pressure relative to the solid pressure. Fractures form when matrix permeability is insufficient to accommodate fluid flow resulting from compaction, decompression (Staude et al. 2009) or metamorphic dehydration reactions (Weisheit et al. 2013). Open fractures can close when the contained fluid either seeps into the matrix or escapes by fracture propagation: mobile hydrofractures (Bons, 2001). In the model, closing and sealing of fractures is controlled by a time-dependent viscous law, which is based on the effective stress and on either Newtonian or non-Newtonian viscosity. Our simulations indicate that the bulk of crustal fluid flow in the middle to lower upper crust is intermittent, highly self-organized, and occurs as mobile hydrofractures. This is due to the low matrix porosity and permeability, combined with a low matrix viscosity and, hence, fast sealing of fractures. Stable fracture networks, generated by fluid overpressure, are restricted to the uppermost crust. Semi-stable fracture networks can develop in an intermediate zone, if a critical overpressure is reached. Flow rates in mobile hydrofractures exceed those in the matrix porosity and fracture networks by orders of magnitude

  8. Verification strategies for fluid-based plasma simulation models

    Science.gov (United States)

    Mahadevan, Shankar

    2012-10-01

    Verification is an essential aspect of computational code development for models based on partial differential equations. However, verification of plasma models is often conducted internally by authors of these programs and not openly discussed. Several professional research bodies including the IEEE, AIAA, ASME and others have formulated standards for verification and validation (V&V) of computational software. This work focuses on verification, defined succinctly as determining whether the mathematical model is solved correctly. As plasma fluid models share several aspects with the Navier-Stokes equations used in Computational Fluid Dynamics (CFD), the CFD verification process is used as a guide. Steps in the verification process: consistency checks, examination of iterative, spatial and temporal convergence, and comparison with exact solutions, are described with examples from plasma modeling. The Method of Manufactured Solutions (MMS), which has been used to verify complex systems of PDEs in solid and fluid mechanics, is introduced. An example of the application of MMS to a self-consistent plasma fluid model using the local mean energy approximation is presented. The strengths and weaknesses of the techniques presented in this work are discussed.

  9. Numerical simulation of fluid bed drying based on two-fluid model and experimental validation

    Energy Technology Data Exchange (ETDEWEB)

    Assari, M.R. [Jundi-shapur University, Dezful (Iran); Basirat Tabrizi, H.; Saffar-Avval, M. [Amirkabir University of Technology, Department of Mechanical Engineering, Tehran (Iran)

    2007-02-15

    A mathematical model for batch drying based on the Eulerian 'two-fluid models' was developed. The two-dimensional, axis-symmetrical cylindrical equations for both phases were solved numerically. The governing equations were discretized using a finite volume method with local grid refinement near the wall and inlet port. The effects of parameters such as inlet gas velocity and inlet gas temperature on the moisture content, temperature of solid and gas at the outlet are shown. This data from the model was compared with that obtained from experiments with a fluidized bed and found to be in reasonably good agreement. (author)

  10. Experimental Evaluation of Equivalent-Fluid Models for Melamine Foam

    Science.gov (United States)

    Allen, Albert R.; Schiller, Noah H.

    2016-01-01

    Melamine foam is a soft porous material commonly used in noise control applications. Many models exist to represent porous materials at various levels of fidelity. This work focuses on rigid frame equivalent fluid models, which represent the foam as a fluid with a complex speed of sound and density. There are several empirical models available to determine these frequency dependent parameters based on an estimate of the material flow resistivity. Alternatively, these properties can be experimentally educed using an impedance tube setup. Since vibroacoustic models are generally sensitive to these properties, this paper assesses the accuracy of several empirical models relative to impedance tube measurements collected with melamine foam samples. Diffuse field sound absorption measurements collected using large test articles in a laboratory are also compared with absorption predictions determined using model-based and measured foam properties. Melamine foam slabs of various thicknesses are considered.

  11. A fluid model for Helicobacter pylori

    Science.gov (United States)

    Reigh, Shang-Yik; Lauga, Eric

    2015-11-01

    Swimming microorganisms and self-propelled nanomotors are often found in confined environments. The bacterium Helicobacter pylori survives in the acidic environment of the human stomach and is able to penetrate gel-like mucus layers and cause infections by locally changing the rheological properties of the mucus from gel-like to solution-like. In this talk we propose an analytical model for the locomotion of Helicobacter pylori as a confined spherical squirmer which generates its own confinement. We solve analytically the flow field around the swimmer, and derive the swimming speed and energetics. The role of the boundary condition in the outer wall is discussed. An extension of our model is also proposed for other biological and chemical swimmers. Newton Trust.

  12. Asymptotic Solution of a Model for Bilayer Organic Diodes and Solar Cells

    KAUST Repository

    Richardson, Giles

    2012-11-15

    Organic diodes and solar cells are constructed by placing together two organic semiconducting materials with dissimilar electron affinities and ionization potentials. The electrical behavior of such devices has been successfully modeled numerically using conventional drift diffusion together with recombination (which is usually assumed to be bimolecular) and thermal generation. Here a particular model is considered and the dark current-voltage curve and the spatial structure of the solution across the device is extracted analytically using asymptotic methods. We concentrate on the case of Shockley-Read-Hall recombination but note the extension to other recombination mechanisms. We find that there are three regimes of behavior, dependent on the total current. For small currents-i.e., at reverse bias or moderate forward bias-the structure of the solution is independent of the total current. For large currents-i.e., at strong forward bias-the current varies linearly with the voltage and is primarily controlled by drift of charges in the organic layers. There is then a narrow range of currents where the behavior undergoes a transition between the two regimes. The magnitude of the parameter that quantifies the interfacial recombination rate is critical in determining where the transition occurs. The extension of the theory to organic solar cells generating current under illumination is discussed as is the analogous current-voltage curves derived where the photo current is small. Finally, by comparing the analytic results to real experimental data, we show how the model parameters can be extracted from the shape of current-voltage curves measured in the dark. © 2012 Society for Industrial and Applied Mathematics.

  13. Dark radiation from a unified dark fluid model

    CERN Document Server

    Geng, Chao-Qiang; Zhang, Xin

    2014-01-01

    We present a unified dark fluid model to describe the possible evolutionary behavior of $\\Delta N_\\mathrm{eff}$ in dark radiation. This model can be viewed as an interacting model for the dark sectors, in which dark matter interacts with dark radiation. We show that the evolution of $\\Delta N_\\mathrm{eff}$ can be nicely explained without some drawbacks, such as the blowup of $\\Delta N_\\mathrm{eff}$ at the late time and the interaction term at the early time.

  14. Reduced order modeling of fluid/structure interaction.

    Energy Technology Data Exchange (ETDEWEB)

    Barone, Matthew Franklin; Kalashnikova, Irina; Segalman, Daniel Joseph; Brake, Matthew Robert

    2009-11-01

    This report describes work performed from October 2007 through September 2009 under the Sandia Laboratory Directed Research and Development project titled 'Reduced Order Modeling of Fluid/Structure Interaction.' This project addresses fundamental aspects of techniques for construction of predictive Reduced Order Models (ROMs). A ROM is defined as a model, derived from a sequence of high-fidelity simulations, that preserves the essential physics and predictive capability of the original simulations but at a much lower computational cost. Techniques are developed for construction of provably stable linear Galerkin projection ROMs for compressible fluid flow, including a method for enforcing boundary conditions that preserves numerical stability. A convergence proof and error estimates are given for this class of ROM, and the method is demonstrated on a series of model problems. A reduced order method, based on the method of quadratic components, for solving the von Karman nonlinear plate equations is developed and tested. This method is applied to the problem of nonlinear limit cycle oscillations encountered when the plate interacts with an adjacent supersonic flow. A stability-preserving method for coupling the linear fluid ROM with the structural dynamics model for the elastic plate is constructed and tested. Methods for constructing efficient ROMs for nonlinear fluid equations are developed and tested on a one-dimensional convection-diffusion-reaction equation. These methods are combined with a symmetrization approach to construct a ROM technique for application to the compressible Navier-Stokes equations.

  15. Modeling and comparative study of fluid velocities in heterogeneous rocks

    Science.gov (United States)

    Hingerl, Ferdinand F.; Romanenko, Konstantin; Pini, Ronny; Balcom, Bruce; Benson, Sally

    2013-04-01

    Detailed knowledge of the distribution of effective porosity and fluid velocities in heterogeneous rock samples is crucial for understanding and predicting spatially resolved fluid residence times and kinetic reaction rates of fluid-rock interactions. The applicability of conventional MRI techniques to sedimentary rocks is limited by internal magnetic field gradients and short spin relaxation times. The approach developed at the UNB MRI Centre combines the 13-interval Alternating-Pulsed-Gradient Stimulated-Echo (APGSTE) scheme and three-dimensional Single Point Ramped Imaging with T1 Enhancement (SPRITE). These methods were designed to reduce the errors due to effects of background gradients and fast transverse relaxation. SPRITE is largely immune to time-evolution effects resulting from background gradients, paramagnetic impurities and chemical shift. Using these techniques quantitative 3D porosity maps as well as single-phase fluid velocity fields in sandstone core samples were measured. Using a new Magnetic Resonance Imaging technique developed at the MRI Centre at UNB, we created 3D maps of porosity distributions as well as single-phase fluid velocity distributions of sandstone rock samples. Then, we evaluated the applicability of the Kozeny-Carman relationship for modeling measured fluid velocity distributions in sandstones samples showing meso-scale heterogeneities using two different modeling approaches. The MRI maps were used as reference points for the modeling approaches. For the first modeling approach, we applied the Kozeny-Carman relationship to the porosity distributions and computed respective permeability maps, which in turn provided input for a CFD simulation - using the Stanford CFD code GPRS - to compute averaged velocity maps. The latter were then compared to the measured velocity maps. For the second approach, the measured velocity distributions were used as input for inversely computing permeabilities using the GPRS CFD code. The computed

  16. Structural Changes in Ceramide Bilayers Rationalize Increased Permeation through Stratum Corneum Models with Shorter Acyl Tails.

    Science.gov (United States)

    Paloncýová, Markéta; Vávrová, Kateřina; Sovová, Žofie; DeVane, Russell; Otyepka, Michal; Berka, Karel

    2015-07-30

    Ceramides are indispensable constituents of the stratum corneum (SC), the uppermost impermeable layer of human skin. Ceramides with shorter (four- to eight-carbon acyl chains) fatty acid chains increase skin and model membrane permeability, while further shortening of the chain leads to increased resistance to penetration almost as good as that of ceramides from healthy skin (24 carbons long on average). Here we address the extent to which the atomistic CHARMM36 and coarse-grain MARTINI molecular dynamics (MD) simulations reflect the skin permeability data. As a result, we observed the same bell-shaped permeability trend for water that was observed in the skin and multilayer membrane experiments for model compounds. We showed that the enhanced permeability of the short ceramides is mainly caused by the disturbance of their headgroup conformation because of their inability to accommodate the shorter lipid acyl chain into a typical hairpin conformation, which further led to their destabilization and phase separation. As MD simulations described well delicate structural features of SC membranes, they seem to be suitable for further studies of the SC superstructure, including the development of skin penetration enhancers for transdermal drug delivery and skin toxicity risk assessment studies.

  17. Phase-separation models for swimming enhancement in complex fluids

    CERN Document Server

    Man, Yi

    2015-01-01

    Swimming cells often have to self-propel through fluids displaying non-Newtonian rheology. While past theoretical work seems to indicate that stresses arising from complex fluids should systematically hinder low-Reynolds number locomotion, experimental observations suggest that locomotion enhancement is possible. In this paper we propose a physical mechanism for locomotion enhancement of microscopic swimmers in a complex fluid. It is based on the fact that micro-structured fluids will generically phase-separate near surfaces, leading to the presence of low-viscosity layers which promote slip and decrease viscous friction near the surface of the swimmer. We use two models to address the consequence of this phase separation: a nonzero apparent slip length for the fluid and then an explicit modeling of the change of viscosity in a thin layer near the swimmer. Considering two canonical setups for low-Reynolds number locomotion, namely the waving locomotion of a two-dimensional sheet and that of a three-dimensiona...

  18. Modeling anisotropic elasticity of fluid membranes

    CERN Document Server

    Ramakrishnan, N; Ipsen, John H; 10.1002/mats.201100002

    2011-01-01

    The biological membrane, which compartmentalizes the cell and its organelles, exhibit wide variety of macroscopic shapes of varying morphology and topology. A systematic understanding of the relation of membrane shapes to composition, external field, environmental conditions etc. have important biological relevance. Here we review the triangulated surface model, used in the macroscopic simulation of membranes and the associated Monte Carlo (DTMC) methods. New techniques to calculate surface quantifiers, that will facilitate the study of additional in-plane orientational degrees of freedom, has been introduced. The mere presence of a polar and nematic fields in the ordered phase drives the ground state conformations of the membrane to a cylinder and tetrahedron respectively.

  19. Multiscale modeling for fluid transport in nanosystems.

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Jonathan W.; Jones, Reese E.; Mandadapu, Kranthi Kiran; Templeton, Jeremy Alan; Zimmerman, Jonathan A.

    2013-09-01

    Atomistic-scale behavior drives performance in many micro- and nano-fluidic systems, such as mircrofludic mixers and electrical energy storage devices. Bringing this information into the traditionally continuum models used for engineering analysis has proved challenging. This work describes one such approach to address this issue by developing atomistic-to-continuum multi scale and multi physics methods to enable molecular dynamics (MD) representations of atoms to incorporated into continuum simulations. Coupling is achieved by imposing constraints based on fluxes of conserved quantities between the two regions described by one of these models. The impact of electric fields and surface charges are also critical, hence, methodologies to extend finite-element (FE) MD electric field solvers have been derived to account for these effects. Finally, the continuum description can have inconsistencies with the coarse-grained MD dynamics, so FE equations based on MD statistics were derived to facilitate the multi scale coupling. Examples are shown relevant to nanofluidic systems, such as pore flow, Couette flow, and electric double layer.

  20. A revised model of fluid transport optimization in Physarum polycephalum.

    Science.gov (United States)

    Bonifaci, Vincenzo

    2017-02-01

    Optimization of fluid transport in the slime mold Physarum polycephalum has been the subject of several modeling efforts in recent literature. Existing models assume that the tube adaptation mechanism in P. polycephalum's tubular network is controlled by the sheer amount of fluid flow through the tubes. We put forward the hypothesis that the controlling variable may instead be the flow's pressure gradient along the tube. We carry out the stability analysis of such a revised mathematical model for a parallel-edge network, proving that the revised model supports the global flow-optimizing behavior of the slime mold for a substantially wider class of response functions compared to previous models. Simulations also suggest that the same conclusion may be valid for arbitrary network topologies.

  1. An improved model for reduced-order physiological fluid flows

    CERN Document Server

    San, Omer; 10.1142/S0219519411004666

    2012-01-01

    An improved one-dimensional mathematical model based on Pulsed Flow Equations (PFE) is derived by integrating the axial component of the momentum equation over the transient Womersley velocity profile, providing a dynamic momentum equation whose coefficients are smoothly varying functions of the spatial variable. The resulting momentum equation along with the continuity equation and pressure-area relation form our reduced-order model for physiological fluid flows in one dimension, and are aimed at providing accurate and fast-to-compute global models for physiological systems represented as networks of quasi one-dimensional fluid flows. The consequent nonlinear coupled system of equations is solved by the Lax-Wendroff scheme and is then applied to an open model arterial network of the human vascular system containing the largest fifty-five arteries. The proposed model with functional coefficients is compared with current classical one-dimensional theories which assume steady state Hagen-Poiseuille velocity pro...

  2. Modelling fluid flow in a reciprocating compressor

    Directory of Open Access Journals (Sweden)

    Tuhovcak Jan

    2015-01-01

    Full Text Available Efficiency of reciprocating compressor is strongly dependent on the valves characteristics, which affects the flow through the suction and discharge line. Understanding the phenomenon inside the compressor is necessary step in development process. Commercial CFD tools offer wide capabilities to simulate the flow inside the reciprocating compressor, however they are too complicated in terms of computational time and mesh creation. Several parameters describing compressor could be therefore examined without the CFD analysis, such is valve characteristic, flow through the cycle and heat transfer. The aim of this paper is to show a numerical tool for reciprocating compressor based on the energy balance through the cycle, which provides valve characteristics, flow through the cycle and heat losses from the cylinder. Spring-damping-mass model was used for the valve description. Boundary conditions were extracted from the performance test of 4-cylinder semihermetic compressor and numerical tool validation was performed with indicated p-V diagram comparison.

  3. Modelling fluid flow in a reciprocating compressor

    Science.gov (United States)

    Tuhovcak, Jan; Hejčík, Jiří; Jícha, Miroslav

    2015-05-01

    Efficiency of reciprocating compressor is strongly dependent on the valves characteristics, which affects the flow through the suction and discharge line. Understanding the phenomenon inside the compressor is necessary step in development process. Commercial CFD tools offer wide capabilities to simulate the flow inside the reciprocating compressor, however they are too complicated in terms of computational time and mesh creation. Several parameters describing compressor could be therefore examined without the CFD analysis, such is valve characteristic, flow through the cycle and heat transfer. The aim of this paper is to show a numerical tool for reciprocating compressor based on the energy balance through the cycle, which provides valve characteristics, flow through the cycle and heat losses from the cylinder. Spring-damping-mass model was used for the valve description. Boundary conditions were extracted from the performance test of 4-cylinder semihermetic compressor and numerical tool validation was performed with indicated p-V diagram comparison.

  4. Inhomogeneous generalizations of Bianchi type VIh models with perfect fluid

    Science.gov (United States)

    Roy, S. R.; Prasad, A.

    1991-07-01

    Inhomogeneous universes admitting an Abelian G2 of isometry and filled with perfect fluid have been derived. These contain as special cases exact homogeneous universes of Bianchi type VIh. Many of these universes asymptotically tend to homogeneous Bianchi VIh universes. The models have been discussed for their physical and kinematical behaviors.

  5. Seismoelectric fluid/porous-medium interface response model and measurements

    NARCIS (Netherlands)

    Schakel, M.D.; Smeulders, D.M.J.; Slob, E.C.; Heller, H.K.J.

    2011-01-01

    Coupled seismic and electromagnetic (EM) wave effects in fluid-saturated porous media are measured since decades. However, direct comparisons between theoretical seismoelectric wavefields and measurements are scarce. A seismoelectric full-waveform numerical model is developed, which predicts both th

  6. High order fluid model for ionization fronts in streamer discharges

    NARCIS (Netherlands)

    Markosyan, A.; Dujko, S.; Ebert, U.; Almeida, P.G.C.; Alves, L.L.; Guerra, V.

    2012-01-01

    A high order fluid model for streamer dynamics is developed by closing the system after the 4th mo- ment of the Boltzmann equation in local mean energy approximation. This is done by approximating the high order pressure tensor in the heat flux equation through the previous moments. The electric fi

  7. Historical Review of the Fluid Percussion TBI Model

    Directory of Open Access Journals (Sweden)

    Bruce G Lyeth

    2016-12-01

    Full Text Available Abstract:Traumatic brain injury (TBI is a major health concern worldwide. Laboratory studies utilizing animal models of TBI are essential for addressing pathological mechanisms of brain injury and development of innovative treatments. Over the past 75 years, pioneering head injury researchers have devised and tested a number of fluid percussive methods to reproduce in animals the concussive clinical syndrome. The fluid percussion brain injury technique has evolved from early investigations that applied a generalized loading of the brain to more recent computer controlled systems. Of the many pre-clinical TBI models, the fluid percussion technique is one of the most extensively characterized and widely used models. Some of the most important advances involved the development of the Stalhammer device to produce concussion in cats and the later characterization of this device for application in rodents. The goal of this historical review is to provide readers with an appreciation for the time and effort expended by the pioneering researchers that have led to today’s state of the art fluid percussion animal models of TBI.

  8. Bladder tissue regeneration using acellular bi-layer silk scaffolds in a large animal model of augmentation cystoplasty.

    Science.gov (United States)

    Tu, Duong D; Chung, Yeun Goo; Gil, Eun Seok; Seth, Abhishek; Franck, Debra; Cristofaro, Vivian; Sullivan, Maryrose P; Di Vizio, Dolores; Gomez, Pablo; Adam, Rosalyn M; Kaplan, David L; Estrada, Carlos R; Mauney, Joshua R

    2013-11-01

    Acellular scaffolds derived from Bombyx mori silk fibroin were investigated for their ability to support functional tissue regeneration in a porcine model of augmentation cystoplasty. Two bi-layer matrix configurations were fabricated by solvent-casting/salt leaching either alone (Group 1) or in combination with silk film casting (Group 2) to yield porous foams buttressed by heterogeneous surface pore occlusions or homogenous silk films, respectively. Bladder augmentation was performed with each scaffold group (6 × 6 cm(2)) in juvenile Yorkshire swine for 3 m of implantation. Augmented animals exhibited high rates of survival (Group 1: 5/6, 83%; Group 2: 4/4, 100%) and voluntary voiding over the course of the study period. Urodynamic evaluations demonstrated mean increases in bladder capacity over pre-operative levels (Group 1: 277%; Group 2: 153%) which exceeded nonsurgical control gains (144%) encountered due to animal growth.In addition, animals augmented with both matrix configurations displayed increases in bladder compliance over pre-operative levels(Group 1: 357%; Group 2: 338%) similar to growth-related elevations observed in non-surgical controls (354%) [corrected]. Gross tissue evaluations revealed that both matrix configurations supported extensive de novo tissue formation throughout the entire original implantation site which exhibited ultimate tensile strength similar to nonsurgical counterparts. Histological and immunohistochemical analyses showed that both implant groups promoted comparable extents of smooth muscle regeneration and contractile protein (α-smooth muscle actin and SM22α) expression within defect sites similar to controls. Parallel evaluations demonstrated the formation of a transitional, multi-layered urothelium with prominent cytokeratin, uroplakin, and p63 protein expression in both matrix groups. De novo innervation and vascularization processes were evident in all regenerated tissues indicated by synaptophysin-positive neuronal

  9. Influence of the bilayer composition on the binding and membrane disrupting effect of Polybia-MP1, an antimicrobial mastoparan peptide with leukemic T-lymphocyte cell selectivity.

    Science.gov (United States)

    dos Santos Cabrera, Marcia Perez; Arcisio-Miranda, Manoel; Gorjão, Renata; Leite, Natália Bueno; de Souza, Bibiana Monson; Curi, Rui; Procopio, Joaquim; Ruggiero Neto, João; Palma, Mario Sérgio

    2012-06-19

    This study shows that MP-1, a peptide from the venom of the Polybia paulista wasp, is more toxic to human leukemic T-lymphocytes than to human primary lymphocytes. By using model membranes and electrophysiology measurements to investigate the molecular mechanisms underlying this selective action, the porelike activity of MP-1 was identified with several bilayer compositions. The highest average conductance was found in bilayers formed by phosphatidylcholine or a mixture of phosphatidylcholine and phosphatidylserine (70:30). The presence of cholesterol or cardiolipin substantially decreases the MP-1 pore activity, suggesting that the membrane fluidity influences the mechanism of selective toxicity. The determination of partition coefficients from the anisotropy of Trp indicated higher coefficients for the anionic bilayers. The partition coefficients were found to be 1 order of magnitude smaller when the bilayers contain cholesterol or a mixture of cholesterol and sphingomyelin. The blue shift fluorescence, anisotropy values, and Stern-Volmer constants are indications of a deeper penetration of MP-1 into anionic bilayers than into zwitterionic bilayers. Our results indicate that MP-1 prefers to target leukemic cell membranes, and its toxicity is probably related to the induction of necrosis and not to DNA fragmentation. This mode of action can be interpreted considering a number of bilayer properties like fluidity, lipid charge, and domain formation. Cholesterol-containing bilayers are less fluid and less charged and have a tendency to form domains. In comparison to healthy cells, leukemic T-lymphocyte membranes are deprived of this lipid, resulting in decreased peptide binding and lower conductance. We showed that the higher content of anionic lipids increases the level of binding of the peptide to bilayers. Additionally, the absence of cholesterol resulted in enhanced pore activity. These findings may drive the selective toxicity of MP-1 to Jurkat cells.

  10. A gravitational test of wave reinforcement versus fluid density models

    Science.gov (United States)

    Johnson, Jacqueline Umstead

    1990-10-01

    Spermatozoa, protozoa, and algae form macroscopic patterns somewhat analogous to thermally driven convection cells. These bioconvective patterns have attracted interest in the fluid dynamics community, but whether in all cases these waves were gravity driven was unknown. There are two conflicting theories, one gravity dependent (fluid density model), the other gravity independent (wave reinforcement theory). The primary objectives of the summer faculty fellows were to: (1) assist in sample collection (spermatozoa) and preparation for the KC-135 research airplane experiment; and (2) to collaborate on ground testing of bioconvective variables such as motility, concentration, morphology, etc., in relation to their macroscopic patterns. Results are very briefly given.

  11. A Dynamical System Analysis of Three Fluid cosmological Model

    CERN Document Server

    Mahata, Nilanjana

    2015-01-01

    In Friedman-Robertson-Walker flat spacetime, we consider a three fluid cosmological model which contains dark matter, dark energy and baryonic matter in the form of perfect fluid with a barotropic equation of state. Dark matter is taken in form of dust and dark energy is described by a scalar field with a potential $V(\\phi)$. Einstein's field equations are reduced to an autonomous dynamical system by suitable redefinition of basic variables. Considering exponential potential for the scalar field, critical points are obtained for the autonomous system. Finally stability of the critical points and cosmological implications are analyzed.

  12. Viscoelastic deformation of lipid bilayer vesicles†

    Science.gov (United States)

    Wu, Shao-Hua; Sankhagowit, Shalene; Biswas, Roshni; Wu, Shuyang; Povinelli, Michelle L.

    2015-01-01

    Lipid bilayers form the boundaries of the cell and its organelles. Many physiological processes, such as cell movement and division, involve bending and folding of the bilayer at high curvatures. Currently, bending of the bilayer is treated as an elastic deformation, such that its stress-strain response is independent of the rate at which bending strain is applied. We present here the first direct measurement of viscoelastic response in a lipid bilayer vesicle. We used a dual-beam optical trap (DBOT) to stretch 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) giant unilamellar vesicles (GUVs). Upon application of a step optical force, the vesicle membrane deforms in two regimes: a fast, instantaneous area increase, followed by a much slower stretching to an eventual plateau deformation. From measurements of dozens of GUVs, the average time constant of the slower stretching response was 0.225 ± 0.033 s (standard deviation, SD). Increasing the fluid viscosity did not affect the observed time constant. We performed a set of experiments to rule out heating by laser absorption as a cause of the transient behavior. Thus, we demonstrate here that the bending deformation of lipid bilayer membranes should be treated as viscoelastic. PMID:26268612

  13. Viscoelastic deformation of lipid bilayer vesicles.

    Science.gov (United States)

    Wu, Shao-Hua; Sankhagowit, Shalene; Biswas, Roshni; Wu, Shuyang; Povinelli, Michelle L; Malmstadt, Noah

    2015-10-07

    Lipid bilayers form the boundaries of the cell and its organelles. Many physiological processes, such as cell movement and division, involve bending and folding of the bilayer at high curvatures. Currently, bending of the bilayer is treated as an elastic deformation, such that its stress-strain response is independent of the rate at which bending strain is applied. We present here the first direct measurement of viscoelastic response in a lipid bilayer vesicle. We used a dual-beam optical trap (DBOT) to stretch 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) giant unilamellar vesicles (GUVs). Upon application of a step optical force, the vesicle membrane deforms in two regimes: a fast, instantaneous area increase, followed by a much slower stretching to an eventual plateau deformation. From measurements of dozens of GUVs, the average time constant of the slower stretching response was 0.225 ± 0.033 s (standard deviation, SD). Increasing the fluid viscosity did not affect the observed time constant. We performed a set of experiments to rule out heating by laser absorption as a cause of the transient behavior. Thus, we demonstrate here that the bending deformation of lipid bilayer membranes should be treated as viscoelastic.

  14. Localization and interaction of hydroxyflavones with lipid bilayer model membranes: a study using DSC and multinuclear NMR.

    Science.gov (United States)

    Sinha, Ragini; Joshi, Akshada; Joshi, Urmila J; Srivastava, Sudha; Govil, Girjesh

    2014-06-10

    The localization and interaction of six naturally occurring flavones (FLV, 5HF, 6HF, 7HF, CHY and BLN) in DPPC bilayers were studied using DSC and multi-nuclear NMR. DSC results indicate that FLV and 6HF interact with alkyl chains. The (1)H NMR shows interaction of flavones with the sn-glycero region. Ring current induced chemical shifts indicate that 6HF and BLN acquire parallel orientation in bilayers. 2D NOESY spectra indicate partitioning of the B-ring into the alkyl chain region. The DSC, NMR and binding studies indicate that 5HF and 7HF are located near head group region, while 6HF, CHY and BLN are located in the vicinity of sn-glycero region, and FLV is inserted deepest in the membrane.

  15. On the applicability of the two-band model to describe transport across n-p junctions in bilayer graphene

    Science.gov (United States)

    Poole, C. J.

    2010-05-01

    We extend the low-energy effective two-band Hamiltonian for electrons in bilayer graphene (McCann and Fal'ko (2006) [1]) to include a spatially dependent electrostatic potential. We find that this Hamiltonian contains additional terms, as compared to the one used earlier in the analysis of electronic transport in n-p junctions in bilayers (Katsnelson and Novoselov (2006) [3]). However, for potential steps |u|<γ1 (where γ1 is the interlayer coupling), the corrections to the transmission probability due to such terms are small. For the angle-dependent transmission T(θ) we find T(θ)≅sin2(2θ)-(2u/3γ1)sin(4θ)sin(θ), which slightly increases the Fano factor: F≅0.241 for u=40 meV.

  16. Computational fluid dynamics modelling of cerebrospinal fluid pressure in Chiari malformation and syringomyelia.

    Science.gov (United States)

    Clarke, Elizabeth C; Fletcher, David F; Stoodley, Marcus A; Bilston, Lynne E

    2013-07-26

    The pathogenesis of syringomyelia in association with Chiari malformation (CM) is unclear. Studies of patients with CM have shown alterations in the CSF velocity profile and these could contribute to syrinx development or enlargement. Few studies have considered the fluid mechanics of CM patients with and without syringomyelia separately. Three subject-specific CFD models were developed for a normal participant, a CM patient with syringomyelia and a CM patient without syringomyelia. Model geometries, CSF flow rate data and CSF velocity validation data were collected from MRI scans of the 3 subjects. The predicted peak CSF pressure was compared for the 3 models. An extension of the study performed geometry and flow substitution to investigate the relative effects of anatomy and CSF flow profile on resulting spinal CSF pressure. Based on 50 monitoring locations for each of the models, the CM models had significantly higher magnitude (psyringomyelia mechanisms and relative effects of CSF velocity profile and spinal geometry on CSF pressure.

  17. Two-fluid models of superfluid neutron star cores

    CERN Document Server

    Chamel, N

    2008-01-01

    Both relativistic and non-relativistic two-fluid models of neutron star cores are constructed, using the constrained variational formalism developed by Brandon Carter and co-workers. We consider a mixture of superfluid neutrons and superconducting protons at zero temperature, taking into account mutual entrainment effects. Leptons, which affect the interior composition of the neutron star and contribute to the pressure, are also included. We provide the analytic expression of the Lagrangian density of the system, the so-called master function, from which the dynamical equations can be obtained. All the microscopic parameters of the models are calculated consistently using the non-relativistic nuclear energy density functional theory. For comparison, we have also considered relativistic mean field models. The correspondence between relativistic and non-relativistic hydrodynamical models is discussed in the framework of the recently developed 4D covariant formalism of Newtonian multi-fluid hydrodynamics. We hav...

  18. Transient thermohydraulic modeling of two-phase fluid systems

    Science.gov (United States)

    Blet, N.; Delalandre, N.; Ayel, V.; Bertin, Y.; Romestant, C.; Platel, V.

    2012-11-01

    This paper presents a transient thermohydraulic modeling, initially developed for a capillary pumped loop in gravitational applications, but also possibly suitable for all kinds of two-phase fluid systems. Using finite volumes method, it is based on Navier-Stokes equations for transcribing fluid mechanical aspects. The main feature of this 1D-model is based on a network representation by analogy with electrical. This paper also proposes a parametric study of a counterflow condenser following the sensitivity to inlet mass flow rate and cold source temperature. The comparison between modeling results and experimental data highlights a good numerical evaluation of temperatures. Furthermore, the model is able to represent a pretty good dynamic evolution of hydraulic variables.

  19. A fluid mechanical model for current-generating-feeding jellyfish

    Science.gov (United States)

    Peng, Jifeng; Dabiri, John

    2008-11-01

    Many jellyfish species, e.g. moon jellyfish Aurelia aurita, use body motion to generate fluid currents which carry their prey to the vicinity of their capture appendages. In this study, a model was developed to understand the fluid mechanics for this current-generating-feeding mode of jellyfish. The flow generated by free-swimming Aurelia aurita was measured using digital particle image velocimetry. The dynamics of prey (e.g., brine shrimp Artemia) in the flow field were described by a modified Maxey-Riley equation which takes into consideration the inertia of prey and the escape forces, which prey exert in the presence of predator. A Lagrangian analysis was used to identify the region of the flow in which prey can be captured by the jellyfish and the clearance rate was quantified. The study provides a new methodology to study biological current-generating-feeding and the transport and mixing of particles in fluid flow in general.

  20. Fluid coupling in a discrete model of cochlear mechanics.

    Science.gov (United States)

    Elliott, Stephen J; Lineton, Ben; Ni, Guangjian

    2011-09-01

    A discrete model of cochlear mechanics is introduced that includes a full, three-dimensional, description of fluid coupling. This formulation allows the fluid coupling and basilar membrane dynamics to be analyzed separately and then coupled together with a simple piece of linear algebra. The fluid coupling is initially analyzed using a wavenumber formulation and is separated into one component due to one-dimensional fluid coupling and one comprising all the other contributions. Using the theory of acoustic waves in a duct, however, these two components of the pressure can also be associated with a far field, due to the plane wave, and a near field, due to the evanescent, higher order, modes. The near field components are then seen as one of a number of sources of additional longitudinal coupling in the cochlea. The effects of non-uniformity and asymmetry in the fluid chamber areas can also be taken into account, to predict both the pressure difference between the chambers and the mean pressure. This allows the calculation, for example, of the effect of a short cochlear implant on the coupled response of the cochlea.

  1. Bilayered graphene/h-BN with folded holes as new nanoelectronic materials: modeling of structures and electronic properties

    Science.gov (United States)

    Chernozatonskii, Leonid A.; Demin сtor A., Vi; Bellucci, Stefano

    2016-11-01

    The latest achievements in 2-dimensional (2D) material research have shown the perspective use of sandwich structures in nanodevices. We demonstrate the following generation of bilayer materials for electronics and optoelectronics. The atomic structures, the stability and electronic properties of Moiré graphene (G)/h-BN bilayers with folded nanoholes have been investigated theoretically by ab-initio DFT method. These perforated bilayers with folded hole edges may present electronic properties different from the properties of both graphene and monolayer nanomesh structures. The closing of the edges is realized by C-B(N) bonds that form after folding the borders of the holes. Stable ≪round≫ and ≪triangle≫ holes organization are studied and compared with similar hole forms in single layer graphene. The electronic band structures of the considered G/BN nanomeshes reveal semiconducting or metallic characteristics depending on the sizes and edge terminations of the created holes. This investigation of the new types of G/BN nanostructures with folded edges might provide a directional guide for the future of this emerging area.

  2. Effects of oriented surface dipole on photoconversion efficiency in an alkane/lipid-hybrid-bilayer-based photovoltaic model system.

    Science.gov (United States)

    Liu, Lixia; Xie, Hong; Bostic, Heidi E; Jin, Limei; Best, Michael D; Zhang, X Peter; Zhan, Wei

    2013-08-26

    When a phospholipid monolayer containing a zinc-coordinated porphyrin species formed atop a self-assembled monolayer of heptadecafluoro-1-decanethiol (CF3(CF2)7(CH2)2SH) is subjected to photoelectrochemical current generation, a significant modulation effect is observed. Compared with devices that contain similar photoactive lipid monolayers but formed on 1-dodecanethiol SAMs, these fluorinated hybrid bilayers produce a >60% increase in cathodic currents and a similar decrease in anodic currents. Photovoltages recorded from these hybrid bilayers are found to vary in the same fashion. The modulation of photovoltaic responses in these hybrid-bilayer-based devices is explained by the opposite surface dipoles associated with the thiols employed in this study, which in one case (fluorothiol) increase and in another (alkanethiol) decrease the work function of the underlying gold substrates. A similar trend of photovoltage/photocurrent modulation is also observed if fullerene is used as the photoagent in these devices. Our results reveal the intricacy of orientated surface dipole in influencing the photovoltaic processes, and its subtle interplay with other factors related to the photoagents, such as their location and orientation within the organic matrix.

  3. Effects of Oriented Surface Dipole on Photoconversion Efficiency in an Alkane/Lipid-Hybrid-Bilayer-Based Photovoltaic Model System

    KAUST Repository

    Liu, Lixia

    2013-06-21

    When a phospholipid monolayer containing a zinc-coordinated porphyrin species formed atop a self-assembled monolayer of heptadecafluoro-1-decanethiol (CF3(CF2)7(CH2)2SH) is subjected to photoelectrochemical current generation, a significant modulation effect is observed. Compared with devices that contain similar photoactive lipid monolayers but formed on 1-dodecanethiol SAMs, these fluorinated hybrid bilayers produce a >60 % increase in cathodic currents and a similar decrease in anodic currents. Photovoltages recorded from these hybrid bilayers are found to vary in the same fashion. The modulation of photovoltaic responses in these hybrid-bilayer-based devices is explained by the opposite surface dipoles associated with the thiols employed in this study, which in one case (fluorothiol) increase and in another (alkanethiol) decrease the work function of the underlying gold substrates. A similar trend of photovoltage/photocurrent modulation is also observed if fullerene is used as the photoagent in these devices. Our results reveal the intricacy of orientated surface dipole in influencing the photovoltaic processes, and its subtle interplay with other factors related to the photoagents, such as their location and orientation within the organic matrix. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  4. Analytical modeling of photon absorption coefficient in mono and bilayer circular graphene quantum dots for light absorber applications

    Science.gov (United States)

    Tamandani, Shahryar; Darvish, Ghafar

    2017-02-01

    We present an analytical method to calculate photon absorption coefficient in mono and bilayer circular graphene quantum dots (CGQDs). We use kobo equation to extract new closed relation as the main goal. First, we calculate real and imaginary part of optical conductance separately. Then, joint density of states is obtained using a new relation that was extracted for the energy levels of mono and bilayer circular grapheme quantum dots. In this work we use closed equations to calculate energy levels in CGQDs. Next we obtain a new closed formula to calculate the photon absorption coefficient. The results show that the absorption coefficient is related to the size of CGQDs and number of layers. The photon absorption coefficient becomes lower with larger size of CGQDs. It is seen that the results of our method is compatible with the results of practical works. We also compare photon absorption in biased and unbiased bilayer CGQDs and investigate the effect of external magnetic field on photon absorption. rights reserved

  5. General aspects of peptide selectivity towards lipid bilayers and cell membranes studied by variation of the structural parameters of amphipathic helical model peptides.

    Science.gov (United States)

    Dathe, Margitta; Meyer, Jana; Beyermann, Michael; Maul, Björn; Hoischen, Christian; Bienert, Michael

    2002-02-01

    Model compounds of modified hydrophobicity (Eta), hydrophobic moment (mu) and angle subtended by charged residues (Phi) were synthesized to define the general roles of structural motifs of cationic helical peptides for membrane activity and selectivity. The peptide sets were based on a highly hydrophobic, non-selective KLA model peptide with high antimicrobial and hemolytic activity. Variation of the investigated parameters was found to be a suitable method for modifying peptide selectivity towards either neutral or highly negatively charged lipid bilayers. Eta and mu influenced selectivity preferentially via modification of activity on 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (POPC) bilayers, while the size of the polar/hydrophobic angle affected the activity against 1-palmitoyl-2-oleoylphosphatidyl-DL-glycerol (POPG). The influence of the parameters on the activity determining step was modest in both lipid systems and the activity profiles were the result of the parameters' influence on the second less pronounced permeabilization step. Thus, the activity towards POPC vesicles was determined by the high permeabilizing efficiency, however, changes in the structural parameters preferentially influenced the relatively moderate affinity. In contrast, intensive peptide accumulation via electrostatic interactions was sufficient for the destabilization of highly negatively charged POPG lipid membranes, but changes in the activity profile, as revealed by the modification of Phi, seem to be preferentially caused by variation of the low permeabilizing efficiency. The parameters proved very effective also in modifying antimicrobial and hemolytic activity. However, their influence on cell selectivity was limited. A threshold value of hydrophobicity seems to exist which restricted the activity modifying potential of mu and Phi on both lipid bilayers and cell membranes.

  6. Modeling the Fluid Withdraw and Injection Induced Earthquakes

    Science.gov (United States)

    Meng, C.

    2016-12-01

    We present an open source numerical code, Defmod, that allows one to model the induced seismicity in an efficient and standalone manner. The fluid withdraw and injection induced earthquake has been a great concern to the industries including oil/gas, wastewater disposal and CO2 sequestration. Being able to numerically model the induced seismicity is long desired. To do that, one has to consider at lease two processes, a steady process that describes the inducing and aseismic stages before and in between the seismic events, and an abrupt process that describes the dynamic fault rupture accompanied by seismic energy radiations during the events. The steady process can be adequately modeled by a quasi-static model, while the abrupt process has to be modeled by a dynamic model. In most of the published modeling works, only one of these processes is considered. The geomechanicists and reservoir engineers are focused more on the quasi-static modeling, whereas the geophysicists and seismologists are focused more on the dynamic modeling. The finite element code Defmod combines these two models into a hybrid model that uses the failure criterion and frictional laws to adaptively switch between the (quasi-)static and dynamic states. The code is capable of modeling episodic fault rupture driven by quasi-static loading, e.g. due to reservoir fluid withdraw and/or injection, and by dynamic loading, e.g. due to the foregoing earthquakes. We demonstrate a case study for the 2013 Azle earthquake.

  7. Modeling Microgravity Induced Fluid Redistribution Autoregulatory and Hydrostatic Enhancements

    Science.gov (United States)

    Myers, J. G.; Werner, C.; Nelson, E. S.; Feola, A.; Raykin, J.; Samuels, B.; Ethier, C. R.

    2017-01-01

    Space flight induces a marked cephalad (headward) redistribution of blood and interstitial fluid potentially resulting in a loss of venous tone and reduction in heart muscle efficiency upon introduction into the microgravity environment. Using various types of computational models, we are investigating how this fluid redistribution may induce intracranial pressure changes, relevant to reported reductions in astronaut visual acuity, part of the Visual Impairment and Intracranial Pressure (VIIP) syndrome. Methods: We utilize a lumped parameter cardiovascular system (CVS) model, augmented by compartments comprising the cerebral spinal fluid (CSF) space, as the primary tool to describe how microgravity, and the associated lack of hydrostatic gradient, impacts fluid redistribution. Models of ocular fluid pressures and biomechanics then accept the output of the above model as boundary condition input to allow more detailed, local analysis (see IWS Abstract by Ethier et al.). Recently, we enhanced the capabilities our previously reported CVS model through the implementation of robust autoregulatory mechanisms and a more fundamental approach to the implementation of hydrostatic mechanisms. Modifying the approach of Blanco et al., we implemented auto-regulation in a quasi-static manner, as an averaged effect across the span of one heartbeat. This approach reduced the higher frequency perturbations from the regulatory mechanism and was intended to allow longer simulation times (days) than models that implement within-beat regulatory mechanisms (minutes). A more fundamental approach to hydrostatics was implemented by a quasi-1D approach, in which compartment descriptions include compartment length, orientation and relative position, allowed for modeling of body orientation, relative body positioning and, in the future, alternative gravity environments. At this time the inclusion of hydrostatic mechanisms supplies additional capabilities to train and validate the CVS model

  8. Micro-macro models for viscoelastic fluids:modelling,mathematics and numerics

    Institute of Scientific and Technical Information of China (English)

    LE; BRIS; Claude; LELIVRE; Tony

    2012-01-01

    This paper is an introduction to the modelling of viscoelastic fluids,with an emphasis on micromacro(or multiscale) models.Some elements of mathematical and numerical analysis are provided.These notes closely follow the lectures delivered by the second author at the Chinese Academy of Science during the Workshop "Stress Tensor E?ects on Fluid Mechanics" in January 2010.

  9. Mathematical Modelling of Fluid Flow in Cone and Cavitation Formation

    Directory of Open Access Journals (Sweden)

    Milada KOZUBKOVÁ

    2011-06-01

    Full Text Available Problem of cavitation is the undesirable phenomena occuring in the fluid flow in many hydraulic application (pumps, turbines, valves, etc.. Therefore this is in the focus of interest using experimental and mathematical methods. Based on cavitation modelling in Laval nozzle results and experience [1], [2], [4], following problem described as the water flow at the outlet from turbine blade wheel was solved. Primarily the problem is simplified into modelling of water flow in cone. Profiles of axial, radial and tangential velocity are defined on inlet zone. The value of pressure is defined on the outlet. Boundary conditions were defined by main investigator of the grant project – Energy Institute, Victor Kaplan’s Department of Fluid Engineering, Faculty of Mechanical Engineering, Brno University of Technology. The value of air volume was insignificant. Cavitation was solved by Singhal model of cavitation.

  10. A new pressure-parametrization unified dark fluid model

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Deng [Nankai University, Theoretical Physics Division, Chern Institute of Mathematics, Tianjin (China); Yan, Yang-Jie; Meng, Xin-He [Nankai University, Department of Physics, Tianjin (China)

    2017-04-15

    We propose a new pressure-parametrization model to explain the accelerated expansion of the late-time Universe by considering the baryon matter and dark contents (dark matter and dark energy) as a unified dark fluid. To realize this model more physically, we reconstruct it with the quintessence and phantom scalar fields, respectively. We use the recent cosmological data to constrain this model, distinguish it from the standard cosmological model and find that the value of the Hubble constant H{sub 0} = 68.34{sup +0.53}{sub -0.92} supports the global measurement by the Planck satellite at the 1σ confidence level. (orig.)

  11. Structure and fluctuations of a single floating lipid bilayer.

    Science.gov (United States)

    Daillant, J; Bellet-Amalric, E; Braslau, A; Charitat, T; Fragneto, G; Graner, F; Mora, S; Rieutord, F; Stidder, B

    2005-08-16

    A single lipid molecular bilayer of 17 or 18 carbon chain phosphocholines, floating in water near a flat wall, is prepared in the bilayer gel phase and then heated to the fluid phase. Its structure (electron density profile) and height fluctuations are determined by using x-ray reflectivity and non-specular scattering. By fitting the off-specular signal to that calculated for a two-dimensional membrane using a Helfrich Hamiltonian, we determine the three main physical quantities that govern the bilayer height fluctuations: The wall attraction potential is unexpectedly low; the surface tension, roughly independent on chain length and temperature, is moderate (approximately 5 x 10(-4) J.m(-2)) but large enough to dominate the intermediate range of the fluctuation spectrum; and the bending modulus abruptly decreases by an order-of-magnitude from 10(-18) J to 10(-19) J at the bilayer gel-to-fluid transition.

  12. Dispersion of atmospheric fine particulate matters in simulated lung fluid and their effects on model cell membranes.

    Science.gov (United States)

    Zhou, Qiuhua; Wang, Lixin; Cao, Zhaoyu; Zhou, Xuehua; Yang, Fan; Fu, Pingqing; Wang, Zhenhua; Hu, Jingtian; Ding, Lei; Jiang, Wei

    2016-01-15

    Atmospheric fine particulate matter (PM2.5) was collected to investigate its dispersion in simulated lung fluid (SLF) and its interaction with model cell membranes. Organic acids, NH4(+), SO4(2-) and NO3(-) were detected in PM2.5 soluble fraction, and heavy metals were detected from the total mass. The insoluble fraction contained kaolinite, CaCO3, aliphatic carbons, aromatic rings, carboxyl and hydroxyl groups reflected by the infrared spectra. Proteins dispersed PM2.5 in SLF, resulted in smaller hydrodynamic diameter (dH) and slower sedimentation rate. Conversely, phospholipids increased dH value and accelerated sedimentation rate. Giant unilamellar vesicles (GUVs) and supported lipid bilayers (SLBs) were used as model cell membranes. PM2.5 adhered on and disrupted the membrane containing positively-charged lipids but not the membrane containing neutrally- and negatively-charged lipids, which was monitored by microscopy and a quartz crystal microbalance with dissipation (QCM-D). The cationic sites on membrane were necessary for PM2.5 adhesion, but membrane should be disrupted by the combined action of electrostatic forces and hydrogen bonds between PM2.5 oxygen containing groups and the lipid phosphate groups. Our results specified the roles of proteins and phospholipids in PM2.5 dispersion and transport, highly suggested that the health hazard of PM2.5 was related to the biomolecules in the lung fluid and the particle surface groups.

  13. Equilibrium insertion of nanoscale objects into phospholipid bilayers

    CERN Document Server

    Pogodin, Sergey

    2011-01-01

    Certain membrane proteins, peptides, nanoparticles and nanotubes have rigid structure and fixed shape. They are often viewed as spheres and cylinders with certain surface properties. Single Chain Mean Field theory is used to model the equilibrium insertion of nanoscale spheres and rods into the phospholipid bilayer. The equilibrium structures and the resulting free energies of the nano-objects in the bilayer allow to distinguish different orientations in the bilayer and estimate the energy barrier of insertion.

  14. Oxygen as a paramagnetic probe for nuclear magnetic resonance: structure and paramagnetic profile of a lipid bilayer/membrane model system

    Energy Technology Data Exchange (ETDEWEB)

    Al-Abdul Wahid, M.S

    2005-07-01

    Paramagnetic contact shifts and relaxation rate enhancements from molecular oxygen dissolved in a model membrane, were studied by nuclear magnetic resonance spectroscopy. The model membrane system was an isotropic bicelle formed using 1-myristelaidoyl-2-myristoyl-d27-sn- glycero-3-phosphocholine (MLMPC), a custom phospholipid, and 1-2-dihexanoyl-d22-sn-glycero-3-phosphocholine (DHPC). The {sup 13}C and {sup 1}H spectra of MLMPC were assigned. Molecular oxygen was delivered at external pressures of 20 and 50 atm. Paramagnetic contact shifts were found to scale with the oxygen solubility gradient in the lipid bilayer, were found to be invariant to temperature changes in the region studied (288K to 331K), and scaled linearly with changes in oxygen pressure. Relaxation rate enhancements from oxygen were low in the headgroup region and increased to a roughly constant rate in the acyl chain region. Rates were comparable to values predicted by simple thermodynamic theories which take into account the observed gradients in diffusion rates and solubility of oxygen in bilayers. (author)

  15. Modeling dark energy through an Ising fluid with network interactions

    CERN Document Server

    Luongo, Orlando

    2013-01-01

    We show that the dark energy effects can be modeled by using an \\emph{Ising perfect fluid} with network interactions, whose low redshift equation of state, i.e. $\\omega_0$, becomes $\\omega_0=-1$ as in the $\\Lambda$CDM model. In our picture, dark energy is characterized by a barotropic fluid on a lattice in the equilibrium configuration. Thus, mimicking the spin interaction by replacing the spin variable with an occupational number, the pressure naturally becomes negative. We find that the corresponding equation of state mimics the effects of a variable dark energy term, whose limiting case reduces to the cosmological constant $\\Lambda$. This permits us to avoid the introduction of a vacuum energy as dark energy source by hand, alleviating the coincidence and fine tuning problems. We find fairly good cosmological constraints, by performing three tests with supernovae Ia, baryonic acoustic oscillation and cosmic microwave background measurements. Finally, we perform the AIC and BIC selection criteria, showing t...

  16. Coupling lattice Boltzmann and molecular dynamics models for dense fluids

    Science.gov (United States)

    Dupuis, A.; Kotsalis, E. M.; Koumoutsakos, P.

    2007-04-01

    We propose a hybrid model, coupling lattice Boltzmann (LB) and molecular dynamics (MD) models, for the simulation of dense fluids. Time and length scales are decoupled by using an iterative Schwarz domain decomposition algorithm. The MD and LB formulations communicate via the exchange of velocities and velocity gradients at the interface. We validate the present LB-MD model in simulations of two- and three-dimensional flows of liquid argon past and through a carbon nanotube. Comparisons with existing hybrid algorithms and with reference MD solutions demonstrate the validity of the present approach.

  17. Modeling and Algorithmic Approaches to Constitutively-Complex, Microstructured Fluids

    Energy Technology Data Exchange (ETDEWEB)

    Miller, Gregory H. [Univ. of California, Davis, CA (United States); Forest, Gregory [Univ. of California, Davis, CA (United States)

    2014-05-01

    We present a new multiscale model for complex fluids based on three scales: microscopic, kinetic, and continuum. We choose the microscopic level as Kramers' bead-rod model for polymers, which we describe as a system of stochastic differential equations with an implicit constraint formulation. The associated Fokker-Planck equation is then derived, and adiabatic elimination removes the fast momentum coordinates. Approached in this way, the kinetic level reduces to a dispersive drift equation. The continuum level is modeled with a finite volume Godunov-projection algorithm. We demonstrate computation of viscoelastic stress divergence using this multiscale approach.

  18. Surface electrostatics of lipid bilayers by EPR of a pH-sensitive spin-labeled lipid.

    Science.gov (United States)

    Voinov, Maxim A; Rivera-Rivera, Izarys; Smirnov, Alex I

    2013-01-08

    Many biophysical processes such as insertion of proteins into membranes and membrane fusion are governed by bilayer electrostatic potential. At the time of this writing, the arsenal of biophysical methods for such measurements is limited to a few techniques. Here we describe a, to our knowledge, new spin-probe electron paramagnetic resonance (EPR) approach for assessing the electrostatic surface potential of lipid bilayers that is based on a recently synthesized EPR probe (IMTSL-PTE) containing a reversibly ionizable nitroxide tag attached to the lipids' polar headgroup. EPR spectra of the probe directly report on its ionization state and, therefore, on electrostatic potential through changes in nitroxide magnetic parameters and the degree of rotational averaging. Further, the lipid nature of the probe provides its full integration into lipid bilayers. Tethering the nitroxide moiety directly to the lipid polar headgroup defines the location of the measured potential with respect to the lipid bilayer interface. Electrostatic surface potentials measured by EPR of IMTSL-PTE show a remarkable (within ±2%) agreement with the Gouy-Chapman theory for anionic DMPG bilayers in fluid (48°C) phase at low electrolyte concentration (50 mM) and in gel (17°C) phase at 150-mM electrolyte concentration. This agreement begins to diminish for DMPG vesicles in gel phase (17°C) upon varying electrolyte concentration and fluid phase bilayers formed from DMPG/DMPC and POPG/POPC mixtures. Possible reasons for such deviations, as well as the proper choice of an electrostatically neutral reference interface, have been discussed. Described EPR method is expected to be fully applicable to more-complex models of cellular membranes.

  19. Two-oscillator model of trapped-modes interaction in a nonlinear bilayer fish-scale metamaterial

    CERN Document Server

    Tuz, Vladimir R; Kochetova, Lyudmila A; Mladyonov, Pavel L; Prosvirnin, Sergey L

    2014-01-01

    We discuss the similarity between the nature of resonant oscillations in two nonlinear systems, namely, a chain of coupled Duffing oscillators and a bilayer fish-scale metamaterial. In such systems two different resonant states arise which differ in their spectral lines. The spectral line of the first resonant state has a Lorentzian form, while the second one has a Fano form. This difference leads to a specific nonlinear response of the systems which manifests itself in appearance of closed loops in spectral lines and bending and overlapping of resonant curves. Conditions of achieving bistability and multistability are found out.

  20. Plasma interfacial mixing layers: Comparisons of fluid and kinetic models

    Science.gov (United States)

    Vold, Erik; Yin, Lin; Taitano, William; Albright, B. J.; Chacon, Luis; Simakov, Andrei; Molvig, Kim

    2016-10-01

    We examine plasma transport across an initial discontinuity between two species by comparing fluid and kinetic models. The fluid model employs a kinetic theory approximation for plasma transport in the limit of small Knudsen number. The kinetic simulations include explicit particle-in-cell simulations (VPIC) and a new implicit Vlasov-Fokker-Planck code, iFP. The two kinetic methods are shown to be in close agreement for many aspects of the mixing dynamics at early times (to several hundred collision times). The fluid model captures some of the earliest time dynamic behavior seen in the kinetic results, and also generally agrees with iFP at late times when the total pressure gradient relaxes and the species transport is dominated by slow diffusive processes. The results show three distinct phases of the mixing: a pressure discontinuity forms across the initial interface (on times of a few collisions), the pressure perturbations propagate away from the interfacial mixing region (on time scales of an acoustic transit) and at late times the pressure relaxes in the mix region leaving a non-zero center of mass flow velocity. The center of mass velocity associated with the outward propagating pressure waves is required to conserve momentum in the rest frame. Work performed under the auspices of the U.S. DOE by the LANS, LLC, Los Alamos National Laboratory under Contract No. DE-AC52-06NA25396. Funding provided by the Advanced Simulation and Computing (ASC) Program.

  1. Optimal design of bi-layer interconnector for SOFC based on CFD-Taguchi method

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Qiuyang; Zeng, Min; Zhang, Jian; Wang, Qiuwang [State Key Laboratory of Multiphase Flow in Power Engineering, Xi' an Jiaotong University, Xi' an, Shaanxi 710049 (China)

    2010-05-15

    In order to reduce the concentration polarization of SOFC, a novel SOFC with bi-layer interconnector is presented. This novel bi-layer interconnector can disturb the fuel and air gas flow in the direction which is normal to the SOFC triple-layer and enhance the mass transfer effectively. In this paper, the effect of bi-layer interconnector on the performance of SOFC is investigated with computational fluid dynamics (CFD) method. Three controllable parameters of interconnector are considered. Each parameter has five levels. The Taguchi method is used as a systematic approach to plan and analyze the CFD results. The numerical results show that the novel interconnector can enhance the mass transfer in porous electrode, reduce the concentration polarization of SOFC, and improve the performance of SOFC. The Taguchi method can reduce the calculation model amount and the calculation time significantly. The optimal levels of controllable parameters for bi-layer interconnects are determined. The contribution ratio of rib height H is the most significant one, for which more attention should be paid during the design and operation stages. (author)

  2. Combining multiblock and detailed fluid flow models (LOVI) - MASIT17

    Energy Technology Data Exchange (ETDEWEB)

    Alopaeus, V.; Moilanen, P.; Visuri, O.; Laakkonen, M.; Aittamaa, J. (Helsinki University of Technology, Faculty of Chemistry and Materials Sciences, Department of Biotechnology and Chemical Technology, Espoo (Finland)); Heiskanen, K.; Wierink, G. (Helsinki University of Technology, Faculty of Chemistry and Materials Sciences, Department of Materials Science and Engineering, Espoo (Finland)); Manninen, M.; Seppaelae, M. (VTT Technical Research Centre of Finland, Espoo (Finland))

    2008-07-01

    The goal of this research project is to develop models for scale-up, design and operation of heterogeneous reactors. By computing a detailed fluid flow field and using it in a multiblock-model the computing times can be kept reasonable. Our modelling is based on phenomenological models verified on experimental results. Several experimental apparatuses have been used to study gas-liquid flow (tapered channel, 14/200dm3 stirred vessels and the 'giraffe') and bubble-particle interactions. A particle imaging velocimetry (PIV) apparatus is being purchased during 2008 to study fluid flow fields. There has been extensive experimental activity. During this project phenomenological models have been verified, numerical methods for the calculation of population balances have been improved, a novel local mixing time analysis method has been developed and automated multiblock generation algorithms have been developed. A method of evaluating CFD results with a single glance with a two-block model has been introduced. Fermentation process of Galilaeus and the flotation cell of Outotec have been modelled. (orig.)

  3. Two-Fluid Mathematical Models for Blood Flow in Stenosed Arteries: A Comparative Study

    Directory of Open Access Journals (Sweden)

    Sankar DS

    2009-01-01

    Full Text Available The pulsatile flow of blood through stenosed arteries is analyzed by assuming the blood as a two-fluid model with the suspension of all the erythrocytes in the core region as a non-Newtonian fluid and the plasma in the peripheral layer as a Newtonian fluid. The non-Newtonian fluid in the core region of the artery is assumed as a (i Herschel-Bulkley fluid and (ii Casson fluid. Perturbation method is used to solve the resulting system of non-linear partial differential equations. Expressions for various flow quantities are obtained for the two-fluid Casson model. Expressions of the flow quantities obtained by Sankar and Lee (2006 for the two-fluid Herschel-Bulkley model are used to get the data for comparison. It is found that the plug flow velocity and velocity distribution of the two-fluid Casson model are considerably higher than those of the two-fluid Herschel-Bulkley model. It is also observed that the pressure drop, plug core radius, wall shear stress and the resistance to flow are significantly very low for the two-fluid Casson model than those of the two-fluid Herschel-Bulkley model. Hence, the two-fluid Casson model would be more useful than the two-fluid Herschel-Bulkley model to analyze the blood flow through stenosed arteries.

  4. Computational fluid dynamic modeling of fluidized-bed polymerization reactors

    Energy Technology Data Exchange (ETDEWEB)

    Rokkam, Ram [Iowa State Univ., Ames, IA (United States)

    2012-01-01

    Polyethylene is one of the most widely used plastics, and over 60 million tons are produced worldwide every year. Polyethylene is obtained by the catalytic polymerization of ethylene in gas and liquid phase reactors. The gas phase processes are more advantageous, and use fluidized-bed reactors for production of polyethylene. Since they operate so close to the melting point of the polymer, agglomeration is an operational concern in all slurry and gas polymerization processes. Electrostatics and hot spot formation are the main factors that contribute to agglomeration in gas-phase processes. Electrostatic charges in gas phase polymerization fluidized bed reactors are known to influence the bed hydrodynamics, particle elutriation, bubble size, bubble shape etc. Accumulation of electrostatic charges in the fluidized-bed can lead to operational issues. In this work a first-principles electrostatic model is developed and coupled with a multi-fluid computational fluid dynamic (CFD) model to understand the effect of electrostatics on the dynamics of a fluidized-bed. The multi-fluid CFD model for gas-particle flow is based on the kinetic theory of granular flows closures. The electrostatic model is developed based on a fixed, size-dependent charge for each type of particle (catalyst, polymer, polymer fines) phase. The combined CFD model is first verified using simple test cases, validated with experiments and applied to a pilot-scale polymerization fluidized-bed reactor. The CFD model reproduced qualitative trends in particle segregation and entrainment due to electrostatic charges observed in experiments. For the scale up of fluidized bed reactor, filtered models are developed and implemented on pilot scale reactor.

  5. Complex fluid flow modeling with SPH on GPU

    Science.gov (United States)

    Bilotta, Giuseppe; Hérault, Alexis; Del Negro, Ciro; Russo, Giovanni; Vicari, Annamaria

    2010-05-01

    We describe an implementation of the Smoothed Particle Hydrodynamics (SPH) method for the simulation of complex fluid flows. The algorithm is entirely executed on Graphic Processing Units (GPUs) using the Compute Unified Device Architecture (CUDA) developed by NVIDIA and fully exploiting their computational power. An increase of one to two orders of magnitude in simulation speed over equivalent CPU code is achieved. A complete modeling of the flow of a complex fluid such as lava is challenging from the modelistic, numerical and computational points of view. The natural topography irregularities, the dynamic free boundaries and phenomena such as solidification, presence of floating solid bodies or other obstacles and their eventual fragmentation make the problem difficult to solve using traditional numerical methods (finite volumes, finite elements): the need to refine the discretization grid in correspondence of high gradients, when possible, is computationally expensive and with an often inadequate control of the error; for real-world applications, moreover, the information needed by the grid refinement may not be available (e.g. because the Digital Elevation Models are too coarse); boundary tracking is also problematic with Eulerian discretizations, more so with complex fluids due to the presence of internal boundaries given by fluid inhomogeneity and presence of solidification fronts. An alternative approach is offered by mesh-free particle methods, that solve most of the problems connected to the dynamics of complex fluids in a natural way. Particle methods discretize the fluid using nodes which are not forced on a given topological structure: boundary treatment is therefore implicit and automatic; the movement freedom of the particles also permits the treatment of deformations without incurring in any significant penalty; finally, the accuracy is easily controlled by the insertion of new particles where needed. Our team has developed a new model based on the

  6. Constant-pH MD Simulations of DMPA/DMPC Lipid Bilayers.

    Science.gov (United States)

    Santos, Hugo A F; Vila-Viçosa, Diogo; Teixeira, Vitor H; Baptista, António M; Machuqueiro, Miguel

    2015-12-08

    Current constant-pH molecular dynamics (CpHMD) simulations provide a proper treatment of pH effects on the structure and dynamics of soluble biomolecules like peptides and proteins. However, addressing such effects on lipid membrane assemblies has remained problematic until now, despite the important role played by lipid ionization at physiological pH in a plethora of biological processes. Modeling (de)protonation events in these systems requires a proper consideration of the physicochemical features of the membrane environment, including a sound treatment of solution ions. Here, we apply our recent CpHMD-L method to the study of pH effects on a 25% DMPA/DMPC bilayer membrane model, closely reproducing the correct lipid phases of this system, namely, gel-fluid coexistence at pH 4 and a fluid phase at pH 7. A significant transition is observed for the membrane ionization and mechanical properties at physiological pH, providing a molecular basis for the well-established role of phosphatidic acid (PA) as a key player in the regulation of many cellular events. Also, as reported experimentally, we observed pH-induced PA-PA lipid aggregation at acidic pH. By including the titration of anionic phospholipids, the current methodology makes possible to simulate lipid bilayers with increased realism. To the best of our knowledge, this is the first simulation study dealing with a continuous phospholipid bilayer with pH titration of all constituent lipids.

  7. The effect of pore fluid on seismicity: a computer model

    Institute of Scientific and Technical Information of China (English)

    1999-01-01

    The influence of fluid on seismicity of a computerized system is analyzed in this paper. The diffusion equation of fluid in a crustal fault area is developed and used in the calculation of a spring-slide-damper model. With mirror imagin boundary condition and three initial conditions, the equation is solved for a dynamic model that consists of six seismic belts and eight seismogenous sources in each belt with both explicit algorithm and implicit algorithm. The analysis of the model with water sources shows that the implicit algorithm is better to be used to calculate the model. Taking a constant proportion of the pore pressure of a broken element to that of its neighboring elements, the seismicity of the model is calculated with mirror boundary condition and no-water-source initial condition. The results shows that the frequency and magnitude of shocks are both higher than those in the model with no water pore pressure, which provides more complexity to earthquake prediction.

  8. Modeling vertical loads in pools resulting from fluid injection. [BWR

    Energy Technology Data Exchange (ETDEWEB)

    Lai, W.; McCauley, E.W.

    1978-06-15

    Table-top model experiments were performed to investigate pressure suppression pool dynamics effects due to a postulated loss-of-coolant accident (LOCA) for the Peachbottom Mark I boiling water reactor containment system. The results guided subsequent conduct of experiments in the /sup 1///sub 5/-scale facility and provided new insight into the vertical load function (VLF). Model experiments show an oscillatory VLF with the download typically double-spiked followed by a more gradual sinusoidal upload. The load function contains a high frequency oscillation superimposed on a low frequency one; evidence from measurements indicates that the oscillations are initiated by fluid dynamics phenomena.

  9. Green Algae as Model Organisms for Biological Fluid Dynamics.

    Science.gov (United States)

    Goldstein, Raymond E

    2015-01-01

    In the past decade the volvocine green algae, spanning from the unicellular Chlamydomonas to multicellular Volvox, have emerged as model organisms for a number of problems in biological fluid dynamics. These include flagellar propulsion, nutrient uptake by swimming organisms, hydrodynamic interactions mediated by walls, collective dynamics and transport within suspensions of microswimmers, the mechanism of phototaxis, and the stochastic dynamics of flagellar synchronization. Green algae are well suited to the study of such problems because of their range of sizes (from 10 μm to several millimetres), their geometric regularity, the ease with which they can be cultured and the availability of many mutants that allow for connections between molecular details and organism-level behavior. This review summarizes these recent developments and highlights promising future directions in the study of biological fluid dynamics, especially in the context of evolutionary biology, that can take advantage of these remarkable organisms.

  10. A mathematical model of post-instability in fluid mechanics

    Science.gov (United States)

    Zak, M. A.

    1982-01-01

    Postinstability of fluids is eliminated in numerical models by introducing multivalued velocity fields after discarding the principle of impenetrability. Smooth functions are shown to be incapable of keeping the derivatives from going towards infinity when iterating solutions for the governing equations such as those defined by Navier-Stokes. Enlarging the class of functions is shown to be necessary to eliminate the appearance of imaginary characteristic roots in the systems of arbitrary partial differential equations, a condition which leads to physically impossible motions. The enlarging is demonstrated to be achievable by allowing several individual particles with different velocities to appear at the same point of space, and the subsequent multivaluedness of the solutions is purely a mathematical concern, rather than one of actual physical existence. Applications are provided for an inviscid fluid and for turbulence.

  11. Texture of lipid bilayer domains

    DEFF Research Database (Denmark)

    Jensen, Uffe Bernchou; Brewer, Jonathan R.; Midtiby, Henrik Skov

    2009-01-01

    chains. By imaging the intensity variations as a function of the polarization angle, we map the lateral variations of the lipid tilt within domains. Results reveal that gel domains are composed of subdomains with different lipid tilt directions. We have applied a Fourier decomposition method......We investigate the texture of gel (g) domains in binary lipid membranes composed of the phospholipids DPPC and DOPC. Lateral organization of lipid bilayer membranes is a topic of fundamental and biological importance. Whereas questions related to size and composition of fluid membrane domain...... are well studied, the possibility of texture in gel domains has so far not been examined. When using polarized light for two-photon excitation of the fluorescent lipid probe Laurdan, the emission intensity is highly sensitive to the angle between the polarization and the tilt orientation of lipid acyl...

  12. Spherically symmetric Einstein-aether perfect fluid models

    CERN Document Server

    Coley, Alan A; Sandin, Patrik; Latta, Joey

    2015-01-01

    We investigate spherically symmetric cosmological models in Einstein-aether theory with a tilted (non-comoving) perfect fluid source. We use a 1+3 frame formalism and adopt the comoving aether gauge to derive the evolution equations, which form a well-posed system of first order partial differential equations in two variables. We then introduce normalized variables. The formalism is particularly well-suited for numerical computations and the study of the qualitative properties of the models, which are also solutions of Horava gravity. We study the local stability of the equilibrium points of the resulting dynamical system corresponding to physically realistic inhomogeneous cosmological models and astrophysical objects with values for the parameters which are consistent with current constraints. In particular, we consider dust models in ($\\beta-$) normalized variables and derive a reduced (closed) evolution system and we obtain the general evolution equations for the spatially homogeneous Kantowski-Sachs model...

  13. Viscoelastic models with consistent hypoelasticity for fluids undergoing finite deformations

    Science.gov (United States)

    Altmeyer, Guillaume; Rouhaud, Emmanuelle; Panicaud, Benoit; Roos, Arjen; Kerner, Richard; Wang, Mingchuan

    2015-08-01

    Constitutive models of viscoelastic fluids are written with rate-form equations when considering finite deformations. Trying to extend the approach used to model these effects from an infinitesimal deformation to a finite transformation framework, one has to ensure that the tensors and their rates are indifferent with respect to the change of observer and to the superposition with rigid body motions. Frame-indifference problems can be solved with the use of an objective stress transport, but the choice of such an operator is not obvious and the use of certain transports usually leads to physically inconsistent formulation of hypoelasticity. The aim of this paper is to present a consistent formulation of hypoelasticity and to combine it with a viscosity model to construct a consistent viscoelastic model. In particular, the hypoelastic model is reversible.

  14. A comparative differential scanning calorimetry study of the effects of cholesterol and various oxysterols on the thermotropic phase behavior of dipalmitoylphosphatidylcholine bilayer membranes.

    Science.gov (United States)

    Benesch, Matthew G K; McElhaney, Ronald N

    2016-02-01

    We have carried out a comparative differential scanning calorimetric (DSC) study of the effects of cholesterol (C) and the eight most physiologically relevant oxysterols on the thermotropic phase behavior of dipalmitoylphosphatidylcholine (DPPC) bilayer membranes. The structures of these oxysterols differ from that of C by the presence of additional hydroxyl, keto or epoxy groups on the steroid ring system or by the presence of a hydroxyl group in the alkyl side chain. In general, the progressive incorporation of these oxysterols reduces the temperature, cooperativity and enthalpy of the pretransition of DPPC to a greater extent than C, indicating that their presence thermally destabilizes and disorders the gel states of DPPC bilayers to a greater extent than C. Similarly, the incorporation of these oxysterols either increases the temperature of the broad component of the main phase transition to a smaller extent than C or actually decreases it. Again, this indicates that the presence of these compounds is less effective at thermally stabilizing and ordering the sterol-rich domains of DPPC bilayers than is C itself. Moreover, the incorporation of these oxysterols decrease the cooperativity and enthalpy of the main phase transition of DPPC to a smaller extent than C, indicating that they are somewhat less miscible in fluid DPPC bilayers than is C. Particularly notable in this regard is 25-hydroxycholesterol, which exhibits a markedly reduced miscibility in both gel and fluid DPPC bilayers compared to C itself. In general, the effectiveness of these oxysterols in stabilizing and ordering DPPC bilayers decreases as their rate of interbilayer exchange and the polarity of the oxysterol increases. We close by providing a tentative molecular explanation for the results of our DSC studies and of those of previous biophysical studies of the effects of various oxysterol on lipid bilayer model membranes. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  15. Phase diagram of a spin-1 magnetic bilayer by cluster variational theory: Exact results for a BEG model on a Bethe lattice with five-fold coordination

    Science.gov (United States)

    Tucker, J. W.; Balcerzak, T.; Gzik, M.; Sukiennicki, A.

    1998-09-01

    The complete global phase diagram for a magnetic spin-1 bilayer, whose interactions are described by the Blume Emery Griffiths model (BEG), is studied by cluster variational theory within the pair approximation. The results obtained, are also the exact results pertaining to the BEG model on a Bethe lattice having coordination number, z=5. Useful analytic expressions are derived for trajectories in phase space containing the second-order (continuous) phase boundaries. The physical existence of these second-order boundaries, together with the location of the first-order phase boundaries, are determined from a Gibbs free energy analysis. Detailed comparison of the results with those of other workers on this, and closely related systems, is made.

  16. Modeling of dilute and dense dispersed fluid-particle flow

    Energy Technology Data Exchange (ETDEWEB)

    Laux, Harald

    1998-08-01

    A general two-fluid model is derived and applied in CFD computations to various test cases of important industrial multiphase flows. It is general in the sense of its applicability to dilute and dense dispersed fluid-particle flows. The model is limited to isothermal flow without mass transfer and only one particle phase is described. The instantaneous fluid phase equations, including the phase interaction terms, are derived from a volume averaging technique, and the instantaneous particle phase equations are derived from the kinetic theory of granular material. Whereas the averaging procedure, the treatment of the interaction terms, and the kinetic theory approach have been reported in literature prior to this work the combination of the approaches is new. The resulting equations are derived without ambiguity in the interpretation of the particle phase pressure (equation-of-state of particle phase). The basic modeling for the particle phase is improved in two steps. Because in the basic modeling only stresses due to kinetic and collisional interactions are included, a simple model for an effective viscosity is developed in order to allow also frictional stresses within the particle phase. Moreover, turbulent stresses and turbulent dispersion of particles play often an important role for the transport processes. Therefore in a second step, a two-equation turbulence model for both fluid and particle phase turbulence is derived by applying the phasic average to the instantaneous equations. The resulting k-{epsilon}-k{sup d}-{epsilon}{sup d} model is new. Mathematical closure is attempted such that the resulting set of equations is valid for both dilute arid dense flows. During the development of the closure relations a clear distinction is made between granular or ''viscous'' microscale fluctuations and turbulent macro scale fluctuations (true particle turbulence) within the particle phase. The set of governing equations is discretized by using a

  17. Improvement of Basic Fluid Dynamics Models for the COMPASS Code

    Science.gov (United States)

    Zhang, Shuai; Morita, Koji; Shirakawa, Noriyuki; Yamamoto, Yuichi

    The COMPASS code is a new next generation safety analysis code to provide local information for various key phenomena in core disruptive accidents of sodium-cooled fast reactors, which is based on the moving particle semi-implicit (MPS) method. In this study, improvement of basic fluid dynamics models for the COMPASS code was carried out and verified with fundamental verification calculations. A fully implicit pressure solution algorithm was introduced to improve the numerical stability of MPS simulations. With a newly developed free surface model, numerical difficulty caused by poor pressure solutions is overcome by involving free surface particles in the pressure Poisson equation. In addition, applicability of the MPS method to interactions between fluid and multi-solid bodies was investigated in comparison with dam-break experiments with solid balls. It was found that the PISO algorithm and free surface model makes simulation with the passively moving solid model stable numerically. The characteristic behavior of solid balls was successfully reproduced by the present numerical simulations.

  18. Lattice-fluid model for gas-liquid chromatography.

    Science.gov (United States)

    Tao, Y; Wells, P S; Yi, X; Yun, K S; Parcher, J F

    1999-11-01

    Lattice-fluid models describe molecular ensembles in terms of the number of lattice sites occupied by molecular species (r-mers) and the interactions between neighboring molecules. The lattice-fluid model proposed by Sanchez and Lacombe (Macromolecules, 1978;11:1145-1156) was used to model specific retention volume data for a series of n-alkane solutes with n-alkane, polystyrene, and poly(dimethylsiloxane) stationary liquid phases. Theoretical equations were derived for the specific retention volume and also for the temperature dependence and limiting (high temperature) values for the specific retention volume. The model was used to predict retention volumes within 10% for the n-alkanes phases; 22% for polystyrene; and from 20 to 70% for PDMS using no adjustable parameters. The temperature derivative (enthalpy) could be calculated within 5% for all of the solutes in nine stationary liquid phases. The limiting value for the specific retention volume at high temperature (entropy controlled state) could be calculated within 10% for all of the systems. The limiting data also provided a new chromatographic method to measure the size parameter, r, for any chromatographic solute using characteristic and size parameters for the stationary phase only. The calculated size parameters of the solutes were consistent, i.e. independent of the stationary phase and agreed within experimental error with the size parameters previously reported from saturated vapor pressure, latent heat of vaporization or density data.

  19. A thermodynamic model to predict wax formation in petroleum fluids

    Energy Technology Data Exchange (ETDEWEB)

    Coutinho, J.A.P. [Universidade de Aveiro (Portugal). Dept. de Quimica. Centro de Investigacao em Quimica]. E-mail: jcoutinho@dq.ua.pt; Pauly, J.; Daridon, J.L. [Universite de Pau et des Pays de l' Adour, Pau (France). Lab. des Fluides Complexes

    2001-12-01

    Some years ago the authors proposed a model for the non-ideality of the solid phase, based on the Predictive Local Composition concept. This was first applied to the Wilson equation and latter extended to NRTL and UNIQUAC models. Predictive UNIQUAC proved to be extraordinarily successful in predicting the behaviour of both model and real hydrocarbon fluids at low temperatures. This work illustrates the ability of Predictive UNIQUAC in the description of the low temperature behaviour of petroleum fluids. It will be shown that using Predictive UNIQUAC in the description of the solid phase non-ideality a complete prediction of the low temperature behaviour of synthetic paraffin solutions, fuels and crude oils is achieved. The composition of both liquid and solid phases, the amount of crystals formed and the cloud points are predicted within the accuracy of the experimental data. The extension of Predictive UNIQUAC to high pressures, by coupling it with an EOS/G{sup E} model based on the SRK EOS used with the LCVM mixing rule, is proposed and predictions of phase envelopes for live oils are compared with experimental data. (author)

  20. A Fluid Model for Performance Analysis in Cellular Networks

    Directory of Open Access Journals (Sweden)

    Coupechoux Marceau

    2010-01-01

    Full Text Available We propose a new framework to study the performance of cellular networks using a fluid model and we derive from this model analytical formulas for interference, outage probability, and spatial outage probability. The key idea of the fluid model is to consider the discrete base station (BS entities as a continuum of transmitters that are spatially distributed in the network. This model allows us to obtain simple analytical expressions to reveal main characteristics of the network. In this paper, we focus on the downlink other-cell interference factor (OCIF, which is defined for a given user as the ratio of its outer cell received power to its inner cell received power. A closed-form formula of the OCIF is provided in this paper. From this formula, we are able to obtain the global outage probability as well as the spatial outage probability, which depends on the location of a mobile station (MS initiating a new call. Our analytical results are compared to Monte Carlo simulations performed in a traditional hexagonal network. Furthermore, we demonstrate an application of the outage probability related to cell breathing and densification of cellular networks.

  1. A new interacting two-fluid model and its consequences

    Science.gov (United States)

    Sharov, G. S.; Bhattacharya, S.; Pan, S.; Nunes, R. C.; Chakraborty, S.

    2017-04-01

    In the background of a homogeneous and isotropic space-time with zero spatial curvature, we consider interacting scenarios between two barotropic fluids, one is the pressureless dark matter and the other one is dark energy (DE), in which the equation of state (EoS) in DE is either constant or time-dependent. In particular, for constant EoS in DE, we show that the evolution equations for both fluids can be analytically solved. For all these scenarios, the model parameters have been constrained using the current astronomical observations from Type Ia supernovae, Hubble parameter measurements and baryon acoustic oscillation distance measurements. Our analysis shows that both for constant and variable EoS in DE, a very small but non-zero interaction in the dark sector is favoured while the EoS in DE can predict a slight phantom nature, i.e. the EoS in DE can cross the phantom divide line '-1'. On the other hand, although the models with variable EoS describe the observations better, the Akaike Information Criterion supports models with minimal number of parameters. However, it is found that all the models are very close to the Λ cold dark matter cosmology.

  2. A THERMODYNAMIC MODEL TO PREDICT WAX FORMATION IN PETROLEUM FLUIDS

    Directory of Open Access Journals (Sweden)

    J.A.P. Coutinho

    2001-12-01

    Full Text Available Some years ago the authors proposed a model for the non-ideality of the solid phase, based on the Predictive Local Composition concept. This was first applied to the Wilson equation and latter extended to NRTL and UNIQUAC models. Predictive UNIQUAC proved to be extraordinarily successful in predicting the behaviour of both model and real hydrocarbon fluids at low temperatures. This work illustrates the ability of Predictive UNIQUAC in the description of the low temperature behaviour of petroleum fluids. It will be shown that using Predictive UNIQUAC in the description of the solid phase non-ideality a complete prediction of the low temperature behaviour of synthetic paraffin solutions, fuels and crude oils is achieved. The composition of both liquid and solid phases, the amount of crystals formed and the cloud points are predicted within the accuracy of the experimental data. The extension of Predictive UNIQUAC to high pressures, by coupling it with an EOS/G E model based on the SRK EOS used with the LCVM mixing rule, is proposed and predictions of phase envelopes for live oils are compared with experimental data.

  3. Computational modeling of fluid structural interaction in arterial stenosis

    Science.gov (United States)

    Bali, Leila; Boukedjane, Mouloud; Bahi, Lakhdar

    2013-12-01

    Atherosclerosis affects the arterial blood vessels causing stenosis because of which the artery hardens resulting in loss of elasticity in the affected region. In this paper, we present: an approach to model the fluid-structure interaction through such an atherosclerosis affected region of the artery, The blood is assumed as an incompressible Newtonian viscous fluid, and the vessel wall was treated as a thick-walled, incompressible and isotropic material with uniform mechanical properties. The numerical simulation has been studied in the context of The Navier-Stokes equations for an interaction with an elastic solid. The study of fluid flow and wall motion was initially carried out separately, Discretized forms of the transformed wall and flow equations, which are coupled through the boundary conditions at their interface, are obtained by control volume method and simultaneously to study the effects of wall deformability, solutions are obtained for both rigid and elastic walls. The results indicate that deformability of the wall causes an increase in the time average of pressure drop, but a decrease in the maximum wall shear stress. Displacement and stress distributions in the wall are presented.

  4. Electron-scale reduced fluid models with gyroviscous effects

    Science.gov (United States)

    Passot, T.; Sulem, P. L.; Tassi, E.

    2017-08-01

    Reduced fluid models for collisionless plasmas including electron inertia and finite Larmor radius corrections are derived for scales ranging from the ion to the electron gyroradii. Based either on pressure balance or on the incompressibility of the electron fluid, they respectively capture kinetic Alfvén waves (KAWs) or whistler waves (WWs), and can provide suitable tools for reconnection and turbulence studies. Both isothermal regimes and Landau fluid closures permitting anisotropic pressure fluctuations are considered. For small values of the electron beta parameter e$ , a perturbative computation of the gyroviscous force valid at scales comparable to the electron inertial length is performed at order e)$ , which requires second-order contributions in a scale expansion. Comparisons with kinetic theory are performed in the linear regime. The spectrum of transverse magnetic fluctuations for strong and weak turbulence energy cascades is also phenomenologically predicted for both types of waves. In the case of moderate ion to electron temperature ratio, a new regime of KAW turbulence at scales smaller than the electron inertial length is obtained, where the magnetic energy spectrum decays like \\bot -13/3$ , thus faster than the \\bot -11/3$ spectrum of WW turbulence.

  5. Beyond Poiseuille: Preservation Fluid Flow in an Experimental Model

    Directory of Open Access Journals (Sweden)

    Saurabh Singh

    2013-01-01

    Full Text Available Poiseuille’s equation describes the relationship between fluid viscosity, pressure, tubing diameter, and flow, yet it is not known if cold organ perfusion systems follow this equation. We investigated these relationships in an ex vivo model and aimed to offer some rationale for equipment selection. Increasing the cannula size from 14 to 20 Fr increased flow rate by a mean (SD of 13 (12%. Marshall’s hyperosmolar citrate was three times less viscous than UW solution, but flows were only 45% faster. Doubling the bag pressure led to a mean (SD flow rate increase of only 19 (13%, not twice the rate. When external pressure devices were used, 100 mmHg of continuous pressure increased flow by a mean (SD of 43 (17% when compared to the same pressure applied initially only. Poiseuille’s equation was not followed; this is most likely due to “slipping” of preservation fluid within the plastic tubing. Cannula size made little difference over the ranges examined; flows are primarily determined by bag pressure and fluid viscosity. External infusor devices require continuous pressurisation to deliver high flow. Future studies examining the impact of perfusion variables on graft outcomes should include detailed equipment descriptions.

  6. Flow of a blood analogue fluid in a compliant abdominal aortic aneurysm model: experimental modelling.

    Science.gov (United States)

    Deplano, Valérie; Knapp, Yannick; Bailly, Lucie; Bertrand, Eric

    2014-04-11

    The aim of this work is to develop a unique in vitro set-up in order to analyse the influence of the shear thinning fluid-properties on the flow dynamics within the bulge of an abdominal aortic aneurysm (AAA). From an experimental point of view, the goals are to elaborate an analogue shear thinning fluid mimicking the macroscopic blood behaviour, to characterise its rheology at low shear rates and to propose an experimental device able to manage such an analogue fluid without altering its feature while reproducing physiological flow rate and pressure, through compliant AAA. Once these experimental prerequisites achieved, the results obtained in the present work show that the flow dynamics is highly dependent on the fluid rheology. The main results point out that the propagation of the vortex ring, generated in the AAA bulge, is slower for shear thinning fluids inducing a smaller travelled distance by the vortex ring so that it never impacts the anterior wall in the distal region, in opposition to Newtonian fluids. Moreover, scalar shear rate values are globally lower for shear thinning fluids inducing higher maximum stress values than those for the Newtonian fluids. Consequently, this work highlights that a Newtonian fluid model is finally inadequate to obtain a reliable prediction of the flow dynamics within AAA.

  7. Modeling supercritical fluid extraction process involving solute-solid interaction

    Energy Technology Data Exchange (ETDEWEB)

    Goto, M.; Roy, B. Kodama, A.; Hirose, T. [Kumamoto Univ., Kumamoto (Japan)

    1998-04-01

    Extraction or leaching of solute from natural solid material is a mass transfer process involving dissolution or release of solutes from a solid matrix. Interaction between the solute and solid matrix often influences the supercritical fluid extraction process. A model accounting for the solute-solid interaction as well as mass transfer is developed. The BET equation is used to incorporate the interaction and the solubility of solutes into the local equilibrium in the model. Experimental data for the supercritical extraction of essential oil and cuticular wax from peppermint leaves are successfully analyzed by the model. The effects of parameters on the extraction behavior are demonstrated to illustrate the concept of the model. 18 refs., 5 figs., 1 tab.

  8. Direct in situ measurement of specific capacitance, monolayer tension, and bilayer tension in a droplet interface bilayer.

    Science.gov (United States)

    Taylor, Graham J; Venkatesan, Guru A; Collier, C Patrick; Sarles, Stephen A

    2015-10-14

    Thickness and tension are important physical parameters of model cell membranes. However, traditional methods to measure these quantities require multiple experiments using separate equipment. This work introduces a new multi-step procedure for directly accessing in situ multiple physical properties of droplet interface bilayers (DIB), including specific capacitance (related to thickness), lipid monolayer tension in the Plateau-Gibbs border, and bilayer tension. The procedure employs a combination of mechanical manipulation of bilayer area followed by electrowetting of the capacitive interface to examine the sensitivities of bilayer capacitance to area and contact angle to voltage, respectively. These data allow for determining the specific capacitance of the membrane and surface tension of the lipid monolayer, which are then used to compute bilayer thickness and tension, respectively. The use of DIBs affords accurate optical imaging of the connected droplets in addition to electrical measurements of bilayer capacitance, and it allows for reversibly varying bilayer area. After validating the accuracy of the technique with diphytanoyl phosphatidylcholine (DPhPC) DIBs in hexadecane, the method is applied herein to quantify separately the effects on membrane thickness and tension caused by varying the solvent in which the DIB is formed and introducing cholesterol into the bilayer. Because the technique relies only on capacitance measurements and optical images to determine both thickness and tension, this approach is specifically well-suited for studying the effects of peptides, biomolecules, natural and synthetic nanoparticles, and other species that accumulate within membranes without altering bilayer conductance.

  9. Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model

    Science.gov (United States)

    Bordner, Andrew J.; Zorman, Barry; Abagyan, Ruben

    2011-10-01

    Membrane proteins comprise a significant fraction of the proteomes of sequenced organisms and are the targets of approximately half of marketed drugs. However, in spite of their prevalence and biomedical importance, relatively few experimental structures are available due to technical challenges. Computational simulations can potentially address this deficit by providing structural models of membrane proteins. Solvation within the spatially heterogeneous membrane/solvent environment provides a major component of the energetics driving protein folding and association within the membrane. We have developed an implicit solvation model for membranes that is both computationally efficient and accurate enough to enable molecular mechanics predictions for the folding and association of peptides within the membrane. We derived the new atomic solvation model parameters using an unbiased fitting procedure to experimental data and have applied it to diverse problems in order to test its accuracy and to gain insight into membrane protein folding. First, we predicted the positions and orientations of peptides and complexes within the lipid bilayer and compared the simulation results with solid-state NMR structures. Additionally, we performed folding simulations for a series of host-guest peptides with varying propensities to form alpha helices in a hydrophobic environment and compared the structures with experimental measurements. We were also able to successfully predict the structures of amphipathic peptides as well as the structures for dimeric complexes of short hexapeptides that have experimentally characterized propensities to form beta sheets within the membrane. Finally, we compared calculated relative transfer energies with data from experiments measuring the effects of mutations on the free energies of translocon-mediated insertion of proteins into lipid bilayers and of combined folding and membrane insertion of a beta barrel protein.

  10. A coupled chemotaxis-fluid model: Global existence

    KAUST Repository

    Liu, Jian-Guo

    2011-09-01

    We consider a model arising from biology, consisting of chemotaxis equations coupled to viscous incompressible fluid equations through transport and external forcing. Global existence of solutions to the Cauchy problem is investigated under certain conditions. Precisely, for the chemotaxis-Navier- Stokes system in two space dimensions, we obtain global existence for large data. In three space dimensions, we prove global existence of weak solutions for the chemotaxis-Stokes system with nonlinear diffusion for the cell density.© 2011 Elsevier Masson SAS. All rights reserved.

  11. River Network Evolution Based on Fluid-Erosion Model

    OpenAIRE

    2010-01-01

    A new landscape evolution model is proposed which is composed of the shallow water equations for the fluid above the sediment and the mass conservation equation of the sediment. Numerical simulations of the formation of landscape and river network are carried out based on these equations. It is shown that steady patterns of river network are formed for the initial inclinations of slopes within 0.00005 and 0.005. The fractal dimensions of the river network and the exponent of Hack's law are ob...

  12. Modeling fluid interactions with the rigid mush in alloy solidification

    Science.gov (United States)

    Plotkowski, Alexander J.

    Macrosegregation is a casting defect characterized by long range composition differences on the length scale of the ingot. These variations in local composition can lead to the development of unwanted phases that are detrimental to mechanical properties. Unlike microsegregation, in which compositions vary over the length scale of the dendrite arms, macrosegregation cannot be removed by subsequent heat treatment, and so it is critical to understand its development during solidification processing. Due to the complex nature of the governing physical phenomena, many researchers have turned to numerical simulations for these predictions, but properly modeling alloy solidification presents a variety of challenges. Among these is the appropriate treatment of the interface between the bulk fluid and the rigid mushy zone. In this region, the non-linear and coupled behavior of heat transfer, fluid mechanics, solute transport, and alloy thermodynamics has a dramatic effect on macrosegregation predictions. This work investigates the impact of numerical approximations at this interface in the context of a mixture model for alloy solidification. First, the numerical prediction of freckles in columnar solidification is investigated, and the predictive ability of the model is evaluated. The model is then extended to equiaxed solidification, in which the analogous interface is the transition of free-floating solid particles to a rigid dendritic network. Various models for grain attachment are investigated, and found to produce significant artifacts caused by the discrete nature of their implementation on the numerical grid. To reduce the impact of these artifacts, a new continuum grain attachment model is proposed and evaluated. The differences between these models are compared using uncertainty quantification, and recommendations for future research are presented.

  13. A Comprehensive Numerical Model for Simulating Fluid Transport in Nanopores

    Science.gov (United States)

    Zhang, Yuan; Yu, Wei; Sepehrnoori, Kamy; di, Yuan

    2017-01-01

    Since a large amount of nanopores exist in tight oil reservoirs, fluid transport in nanopores is complex due to large capillary pressure. Recent studies only focus on the effect of nanopore confinement on single-well performance with simple planar fractures in tight oil reservoirs. Its impacts on multi-well performance with complex fracture geometries have not been reported. In this study, a numerical model was developed to investigate the effect of confined phase behavior on cumulative oil and gas production of four horizontal wells with different fracture geometries. Its pore sizes were divided into five regions based on nanopore size distribution. Then, fluid properties were evaluated under different levels of capillary pressure using Peng-Robinson equation of state. Afterwards, an efficient approach of Embedded Discrete Fracture Model (EDFM) was applied to explicitly model hydraulic and natural fractures in the reservoirs. Finally, three fracture geometries, i.e. non-planar hydraulic fractures, non-planar hydraulic fractures with one set natural fractures, and non-planar hydraulic fractures with two sets natural fractures, are evaluated. The multi-well performance with confined phase behavior is analyzed with permeabilities of 0.01 md and 0.1 md. This work improves the analysis of capillarity effect on multi-well performance with complex fracture geometries in tight oil reservoirs.

  14. Global Regularity for Several Incompressible Fluid Models with Partial Dissipation

    Science.gov (United States)

    Wu, Jiahong; Xu, Xiaojing; Ye, Zhuan

    2017-09-01

    This paper examines the global regularity problem on several 2D incompressible fluid models with partial dissipation. They are the surface quasi-geostrophic (SQG) equation, the 2D Euler equation and the 2D Boussinesq equations. These are well-known models in fluid mechanics and geophysics. The fundamental issue of whether or not they are globally well-posed has attracted enormous attention. The corresponding models with partial dissipation may arise in physical circumstances when the dissipation varies in different directions. We show that the SQG equation with either horizontal or vertical dissipation always has global solutions. This is in sharp contrast with the inviscid SQG equation for which the global regularity problem remains outstandingly open. Although the 2D Euler is globally well-posed for sufficiently smooth data, the associated equations with partial dissipation no longer conserve the vorticity and the global regularity is not trivial. We are able to prove the global regularity for two partially dissipated Euler equations. Several global bounds are also obtained for a partially dissipated Boussinesq system.

  15. Global Regularity for Several Incompressible Fluid Models with Partial Dissipation

    Science.gov (United States)

    Wu, Jiahong; Xu, Xiaojing; Ye, Zhuan

    2016-09-01

    This paper examines the global regularity problem on several 2D incompressible fluid models with partial dissipation. They are the surface quasi-geostrophic (SQG) equation, the 2D Euler equation and the 2D Boussinesq equations. These are well-known models in fluid mechanics and geophysics. The fundamental issue of whether or not they are globally well-posed has attracted enormous attention. The corresponding models with partial dissipation may arise in physical circumstances when the dissipation varies in different directions. We show that the SQG equation with either horizontal or vertical dissipation always has global solutions. This is in sharp contrast with the inviscid SQG equation for which the global regularity problem remains outstandingly open. Although the 2D Euler is globally well-posed for sufficiently smooth data, the associated equations with partial dissipation no longer conserve the vorticity and the global regularity is not trivial. We are able to prove the global regularity for two partially dissipated Euler equations. Several global bounds are also obtained for a partially dissipated Boussinesq system.

  16. A two-fluid model for violent aerated flows

    CERN Document Server

    Dias, Frédéric; Ghidaglia, Jean-Michel

    2008-01-01

    In the study of ocean wave impact on structures, one often uses Froude scaling since the dominant force is gravity. However the presence of trapped or entrained air in the water can significantly modify wave impacts. When air is entrained in water in the form of small bubbles, the acoustic properties in the water change dramatically. While some work has been done to study small-amplitude disturbances in such mixtures, little work has been done on large disturbances in air-water mixtures. We propose a basic two-fluid model in which both fluids share the same velocities and analyze some of its properties. It is shown that this model can successfully mimic water wave impacts on coastal structures. The governing equations are discretized by a second-order finite volume method. Numerical results are presented for two examples: the dam break problem and the drop test problem. It is shown that this basic model can be used to study violent aerated flows, especially by providing fast qualitative estimates.

  17. On numerical modelling of contact lines in fluid flows

    CERN Document Server

    Pelinovsky, Dmitry E

    2013-01-01

    We study numerically a reduced model proposed by Benilov and Vynnycky (J. Fluid Mech. 718 (2013), 481), who examined the behavior of a contact line with a 180-degree contact angle between liquid and a moving plate, in the context of a two-dimensional Couette flow. The model is given by a linear fourth-order advection-diffusion equation with an unknown velocity, which is to be determined dynamically from an additional boundary condition at the contact line. The main claim of Benilov and Vynnycky is that for any physically relevant initial condition, there is a finite positive time at which the velocity of the contact line tends to negative infinity, whereas the profile of the fluid flow remains regular. Additionally, it is claimed that the velocity behaves as the logarithmic function of time near the blow-up time. We simulate dynamics of this model under different initial conditions and confirm the first claim. However, we also show that the blow-up behavior is better approximated by a power function, compared...

  18. Modeling Dark Energy Through AN Ising Fluid with Network Interactions

    Science.gov (United States)

    Luongo, Orlando; Tommasini, Damiano

    2014-12-01

    We show that the dark energy (DE) effects can be modeled by using an Ising perfect fluid with network interactions, whose low redshift equation of state (EoS), i.e. ω0, becomes ω0 = -1 as in the ΛCDM model. In our picture, DE is characterized by a barotropic fluid on a lattice in the equilibrium configuration. Thus, mimicking the spin interaction by replacing the spin variable with an occupational number, the pressure naturally becomes negative. We find that the corresponding EoS mimics the effects of a variable DE term, whose limiting case reduces to the cosmological constant Λ. This permits us to avoid the introduction of a vacuum energy as DE source by hand, alleviating the coincidence and fine tuning problems. We find fairly good cosmological constraints, by performing three tests with supernovae Ia (SNeIa), baryonic acoustic oscillation (BAO) and cosmic microwave background (CMB) measurements. Finally, we perform the Akaike information criterion (AIC) and Bayesian information criterion (BIC) selection criteria, showing that our model is statistically favored with respect to the Chevallier-Polarsky-Linder (CPL) parametrization.

  19. Dynamic dielectrophoresis model of multi-phase ionic fluids.

    Directory of Open Access Journals (Sweden)

    Ying Yan

    Full Text Available Ionic-based dielectrophoretic microchips have attracted significant attention due to their wide-ranging applications in electro kinetic and biological experiments. In this work, a numerical method is used to simulate the dynamic behaviors of ionic droplets in a microchannel under the effect of dielectrophoresis. When a discrete liquid dielectric is encompassed within a continuous fluid dielectric placed in an electric field, an electric force is produced due to the dielectrophoresis effect. If either or both of the fluids are ionic liquids, the magnitude and even the direction of the force will be changed because the net ionic charge induced by an electric field can affect the polarization degree of the dielectrics. However, using a dielectrophoresis model, assuming ideal dielectrics, results in significant errors. To avoid the inaccuracy caused by the model, this work incorporates the electrode kinetic equation and defines a relationship between the polarization charge and the net ionic charge. According to the simulation conditions presented herein, the electric force obtained in this work has an error exceeding 70% of the actual value if the false effect of net ionic charge is not accounted for, which would result in significant issues in the design and optimization of experimental parameters. Therefore, there is a clear motivation for developing a model adapted to ionic liquids to provide precise control for the dielectrophoresis of multi-phase ionic liquids.

  20. Two-fluid model stability, simulation and chaos

    CERN Document Server

    Bertodano, Martín López de; Clausse, Alejandro; Ransom, Victor H

    2017-01-01

    This book addresses the linear and nonlinear two-phase stability of the one-dimensional Two-Fluid Model (TFM) material waves and the numerical methods used to solve it. The TFM fluid dynamic stability is a problem that remains open since its inception more than forty years ago. The difficulty is formidable because it involves the combined challenges of two-phase topological structure and turbulence, both nonlinear phenomena. The one dimensional approach permits the separation of the former from the latter. The authors first analyze the kinematic and Kelvin-Helmholtz instabilities with the simplified one-dimensional Fixed-Flux Model (FFM). They then analyze the density wave instability with the well-known Drift-Flux Model. They demonstrate that the Fixed-Flux and Drift-Flux assumptions are two complementary TFM simplifications that address two-phase local and global linear instabilities separately. Furthermore, they demonstrate with a well-posed FFM and a DFM two cases of nonlinear two-phase behavior that are ...

  1. Is the fluid mosaic (and the accompanying raft hypothesis a suitable model to describe fundamental features of biological membranes? What may be missing?

    Directory of Open Access Journals (Sweden)

    Luis Alberto Bagatolli

    2013-11-01

    Full Text Available The structure, dynamics, and stability of lipid bilayers are controlled by thermodynamic forces, leading to overall tensionless membranes with a distinct lateral organization and a conspicuous lateral pressure profile. Bilayers are also subject to built-in curvature-stress instabilities that may be released locally or globally in terms of morphological changes leading to the formation of non-lamellar and curved structures. A key controller of the bilayer’s propensity to form curved structures is the average molecular shape of the different lipid molecules. Via the curvature stress, molecular shape mediates a coupling to membrane-protein function and provides a set of physical mechanisms for formation of lipid domains and laterally differentiated regions in the plane of the membrane. Unfortunately, these relevant physical features of membranes are often ignored in the most popular models for biological membranes. Results from a number of experimental and theoretical studies emphasize the significance of these fundamental physical properties and call for a refinement of the fluid mosaic model (and the accompanying raft hypothesis.

  2. Lattice Boltzmann modeling of water-like fluids

    Directory of Open Access Journals (Sweden)

    Sauro eSucci

    2014-04-01

    Full Text Available We review recent advances on the mesoscopic modeling of water-like fluids,based on the lattice Boltzmann (LB methodology.The main idea is to enrich the basic LB (hydro-dynamics with angular degrees of freedom responding to suitable directional potentials between water-like molecules.The model is shown to reproduce some microscopic features of liquid water, such as an average number of hydrogen bonds per molecules (HBs between $3$ and $4$, as well as a qualitatively correctstatistics of the hydrogen bond angle as a function of the temperature.Future developments, based on the coupling the present water-like LB model with the dynamics of suspended bodies,such as biopolymers, may open new angles of attack to the simulation of complex biofluidic problems, such as protein folding and aggregation, and the motion of large biomolecules in complex cellular environments.

  3. The regular conducting fluid model for relativistic thermodynamics

    CERN Document Server

    Carter, Brandon

    2012-01-01

    The "regular" model presented here can be considered to be the most natural solution to the problem of constructing the simplest possible relativistic analogue of the category of classical Fourier--Euler thermally conducting fluid models as characterised by a pair of equations of state for just two dependent variables (an equilibrium density and a conducting scalar). The historically established but causally unsatisfactory solution to this problem due to Eckart is shown to be based on an ansatz that is interpretable as postulating a most unnatural relation between the (particle and entropy) velocities and their associated momenta, which accounts for the well known bad behaviour of that model which has recently been shown to have very pathological mixed-elliptic-hyperbolic comportments. The newer (and more elegant) solution of Landau and Lifshitz has a more mathematically respectable parabolic-hyperbolic comportment, but is still compatible with a well posed initial value problem only in such a restricted limi...

  4. On Modeling the Response of Synovial Fluid: Unsteady Flow of a Shear-Thinning, Chemically-Reacting Fluid Mixture

    CERN Document Server

    Bridges, Craig; Rajagopal, K R

    2010-01-01

    We study the flow of a shear-thinning, chemically-reacting fluid that could be used to model the flow of the synovial fluid. The actual geometry where the flow of the synovial fluid takes place is very complicated, and therefore the governing equations are not amenable to simple mathematical analysis. In order to understand the response of the model, we choose to study the flow in a simple geometry. While the flow domain is not a geometry relevant to the flow of the synovial fluid in the human body it yet provides a flow which can be used to assess the efficacy of different models that have been proposed to describe synovial fluids. We study the flow in the annular region between two cylinders, one of which is undergoing unsteady oscillations about their common axis, in order to understand the quintessential behavioral characteristics of the synovial fluid. We use the three models suggested by Hron et al. [ J. Hron, J. M\\'{a}lek, P. Pust\\v{e}jovsk\\'{a}, K. R. Rajagopal, On concentration dependent shear-thinni...

  5. Superdiffusion in supported lipid bilayers

    CERN Document Server

    Campagnola, Grace; Schroder, Bryce W; Peersen, Olve B; Krapf, Diego

    2015-01-01

    We study the diffusion of membrane-targeting C2 domains using single-molecule tracking in supported lipid bilayers. The ensemble-averaged mean square displacement (MSD) exhibits superdiffusive behavior. However, the time-averaged MSD of individual trajectories is found to be linear with respect to lag time, as in Brownian diffusion. These observations are explained in terms of bulk excursions that introduce jumps with a heavy-tail distribution. Our experimental results are shown to agree with analytical models of bulk-mediated diffusion and with numerical simulations.

  6. Modeling of dilute and dense dispersed fluid-particle flow

    Energy Technology Data Exchange (ETDEWEB)

    Laux, Harald

    1998-08-01

    A general two-fluid model is derived and applied in CFD computations to various test cases of important industrial multiphase flows. It is general in the sense of its applicability to dilute and dense dispersed fluid-particle flows. The model is limited to isothermal flow without mass transfer and only one particle phase is described. The instantaneous fluid phase equations, including the phase interaction terms, are derived from a volume averaging technique, and the instantaneous particle phase equations are derived from the kinetic theory of granular material. Whereas the averaging procedure, the treatment of the interaction terms, and the kinetic theory approach have been reported in literature prior to this work the combination of the approaches is new. The resulting equations are derived without ambiguity in the interpretation of the particle phase pressure (equation-of-state of particle phase). The basic modeling for the particle phase is improved in two steps. Because in the basic modeling only stresses due to kinetic and collisional interactions are included, a simple model for an effective viscosity is developed in order to allow also frictional stresses within the particle phase. Moreover, turbulent stresses and turbulent dispersion of particles play often an important role for the transport processes. Therefore in a second step, a two-equation turbulence model for both fluid and particle phase turbulence is derived by applying the phasic average to the instantaneous equations. The resulting k-{epsilon}-k{sup d}-{epsilon}{sup d} model is new. Mathematical closure is attempted such that the resulting set of equations is valid for both dilute arid dense flows. During the development of the closure relations a clear distinction is made between granular or ''viscous'' microscale fluctuations and turbulent macro scale fluctuations (true particle turbulence) within the particle phase. The set of governing equations is discretized by using a

  7. Thermotropic and Barotropic Phase Behavior of Phosphatidylcholine Bilayers

    Directory of Open Access Journals (Sweden)

    Nobutake Tamai

    2013-01-01

    Full Text Available Bilayers formed by phospholipids are frequently used as model biological membranes in various life science studies. A characteristic feature of phospholipid bilayers is to undergo a structural change called a phase transition in response to environmental changes of their surroundings. In this review, we focus our attention on phase transitions of some major phospholipids contained in biological membranes, phosphatidylcholines (PCs, depending on temperature and pressure. Bilayers of dipalmitoylphosphatidylcholine (DPPC, which is the most representative lipid in model membrane studies, will first be explained. Then, the bilayer phase behavior of various kinds of PCs with different molecular structures is revealed from the temperature–pressure phase diagrams, and the difference in phase stability among these PC bilayers is discussed in connection with the molecular structure of the PC molecules. Furthermore, the solvent effect on the phase behavior is also described briefly.

  8. Computational fluid dynamics modeling for emergency preparedness and response

    Energy Technology Data Exchange (ETDEWEB)

    Lee, R.L.; Albritton, J.R.; Ermak, D.L.; Kim, J.

    1995-02-01

    Computational fluid dynamics (CFD) has (CFD) has played an increasing in the improvement of atmospheric dispersion modeling. This is because many dispersion models are now driven by meteorological fields generated from CFD models or, in numerical weather prediction`s terminology, prognostic models. Whereas most dispersion models typically involve one or a few scalar, uncoupled equations, the prognostic equations are a set of highly-couple equations whose solution requires a significant level of computational power. Recent advances in computer hardware and software have enabled modestly-priced, high performance, workstations to exhibit the equivalent computation power of some mainframes. Thus desktop-class machines that were limited to performing dispersion calculations driven by diagnostic wind fields may now be used to calculate complex flows using prognostic CFD models. The Release and Advisory Capability (ARAC) program at Lawrence Livermore National Laboratory (LLNL) has, for the past several years, taken advantage of the improvements in hardware technology to develop a national emergency response capability based on executing diagnostic models on workstations. Diagnostic models that provide wind fields are, in general, simple to implement, robust and require minimal time for execution. Because these models typically contain little physics beyond mass-conservation, their performance is extremely sensitive to the quantity and quality of input meteorological data and, in spite of their utility, can be applied with confidence to only modestly complex flows. We are now embarking on a development program to incorporate prognostic models to generate, in real-time, the meteorological fields for the dispersion models. In contrast to diagnostic models, prognostic models are physically-based and are capable of incorporating many physical processes to treat highly complex flow scenarios.

  9. Fluid of fused spheres as a model for protein solution

    Directory of Open Access Journals (Sweden)

    M. Kastelic

    2016-03-01

    Full Text Available In this work we examine thermodynamics of fluid with "molecules" represented by two fused hard spheres, decorated by the attractive square-well sites. Interactions between these sites are of short-range and cause association between the fused-sphere particles. The model can be used to study the non-spherical (or dimerized proteins in solution. Thermodynamic quantities of the system are calculated using a modification of Wertheim's thermodynamic perturbation theory and the results compared with new Monte Carlo simulations under isobaric-isothermal conditions. In particular, we are interested in the liquid-liquid phase separation in such systems. The model fluid serves to evaluate the effect of the shape of the molecules, changing from spherical to more elongated (two fused spheres ones. The results indicate that the effect of the non-spherical shape is to reduce the critical density and temperature. This finding is consistent with experimental observations for the antibodies of non-spherical shape.

  10. [Postoperative metabolic acidosis: use of three different fluid therapy models].

    Science.gov (United States)

    Tellan, Guglielmo; Antonucci, Adriana; Marandola, Maurizio; Naclerio, Michele; Fiengo, Leslie; Molinari, Stefania; Delogu, Giovanna

    2008-01-01

    Intraoperative fluid administration is considered an important factor in the management of metabolic acidosis following surgical procedures. The aim of this study was to compare three types of intraoperative infusional models in order to evaluate their effect on acid-base changes in the immediate postoperative period as calculated by both the Henderson-Hasselbach equation and the Stewart approach. Forty-seven patients undergoing left hemicolectomy were enrolled in the study and assigned randomly to receiving 0.9% saline alone (Group A, n=16), lactated Ringer's solution alone (Group B, n=16) or 0.9% saline and Ringer's solution, 1:1 ratio (Group C, n=15). Arterial blood samples were taken before operation (t0) and 30 min after extubation (t1) in order to measure the acid-base balance. The results showed a metabolic acidosis status in Group A patients, whereas Group B exhibited metabolic alkalosis only by means of the Stewart method. No difference was found in Group C between the time points t0 and t1 when using either the Henderson-Hasselbach equation or using the Stewart model. We conclude that saline solution in association with Ringer's solution (1:1 ratio) appears to be the most suitable form of intraoperative fluid management in order to guarantee a stable acid-base balance in selected surgical patients during the immediate postoperative period.

  11. Experiments and Modeling of G-Jitter Fluid Mechanics

    Science.gov (United States)

    Leslie, F. W.; Ramachandran, N.; Whitaker, Ann F. (Technical Monitor)

    2002-01-01

    While there is a general understanding of the acceleration environment onboard an orbiting spacecraft, past research efforts in the modeling and analysis area have still not produced a general theory that predicts the effects of multi-spectral periodic accelerations on a general class of experiments nor have they produced scaling laws that a prospective experimenter can use to assess how an experiment might be affected by this acceleration environment. Furthermore, there are no actual flight experimental data that correlates heat or mass transport with measurements of the periodic acceleration environment. The present investigation approaches this problem with carefully conducted terrestrial experiments and rigorous numerical modeling for better understanding the effect of residual gravity and gentler on experiments. The approach is to use magnetic fluids that respond to an imposed magnetic field gradient in much the same way as fluid density responds to a gravitational field. By utilizing a programmable power source in conjunction with an electromagnet, both static and dynamic body forces can be simulated in lab experiments. The paper provides an overview of the technique and includes recent results from the experiments.

  12. Function of Hexagenia (Mayfly) Burrows: Fluid Model Suggests Bacterial Gardening

    Science.gov (United States)

    Traynham, B.; Furbish, D.; Miller, M.; White, D.

    2006-12-01

    Lake and stream bottoms experience an array of physical, chemical, and biological processes that create spatial variations both in the fluid column and in the sediment that provide a physical template for distinct niches. Burrowing insects are major ecological engineers of communities where they structure large areas of the benthic habitat through bioturbation and other activities including respiration, feeding, and defecation. The burrowing mayfly Hexagenia, when present in high densities, has a large impact on food-web dynamics and provides essential ecosystem services within the fluid column and benthic substrate, including sediment mixing, nutrient cycling, and ultimately, energy flow through the freshwater food web. It has long been recognized that particular benthic species are important in linking detrital energy resources to higher trophic levels and for determining how organic matter is processed in freshwater ecosystems; however, the unique contributions made by individual benthic species is largely absent from the literature. Here we present a model that describes the structure and function of a Hexagenia burrow. If testing supports this hypothesis, the model suggests that when high food concentration is available to Hexagenia, there exists a favorable tube length for harvesting bacteria that grow on the burrow walls. The burrow microhabitat created by Hexagenia serves as a case-study in understanding the influence of benthic burrowers on both energy flow through freshwater food webs and nutrient cycling.

  13. Computational methods of the Advanced Fluid Dynamics Model

    Energy Technology Data Exchange (ETDEWEB)

    Bohl, W.R.; Wilhelm, D.; Parker, F.R.; Berthier, J.; Maudlin, P.J.; Schmuck, P.; Goutagny, L.; Ichikawa, S.; Ninokata, H.; Luck, L.B.

    1987-01-01

    To more accurately treat severe accidents in fast reactors, a program has been set up to investigate new computational models and approaches. The product of this effort is a computer code, the Advanced Fluid Dynamics Model (AFDM). This paper describes some of the basic features of the numerical algorithm used in AFDM. Aspects receiving particular emphasis are the fractional-step method of time integration, the semi-implicit pressure iteration, the virtual mass inertial terms, the use of three velocity fields, higher order differencing, convection of interfacial area with source and sink terms, multicomponent diffusion processes in heat and mass transfer, the SESAME equation of state, and vectorized programming. A calculated comparison with an isothermal tetralin/ammonia experiment is performed. We conclude that significant improvements are possible in reliably calculating the progression of severe accidents with further development.

  14. On black hole solutions in model with anisotropic fluid

    CERN Document Server

    Dehnen, H; Melnikov, V N

    2003-01-01

    A family of spherically symmetric solutions in the model with 1-component anisotropic fluid is considered. The metric of the solution depends on a parameter q > 0 relating radial pressure and the density and contains n -1 parameters corresponding to Ricci-flat ``internal space'' metrics. For q = 1 and certain equations of state the metric coincides with the metric of black brane solutions in the model with antisymmetric form. A family of black hole solutions corresponding to natural numbers q = 1,2, ... is singled out. Certain examples of solutions (e.g. containing for q =1 Reissner-Nordstr\\"{o}m, M2 and M5 black brane metrics) are considered. The post-Newtonian parameters beta and gamma corresponding to the 4-dimensional section of the metric are calculated.

  15. Molecular dynamics study of lipid bilayers modeling the plasma membranes of normal murine thymocytes and leukemic GRSL cells.

    Science.gov (United States)

    Andoh, Yoshimichi; Okazaki, Susumu; Ueoka, Ryuichi

    2013-04-01

    Molecular dynamics (MD) calculations for the plasma membranes of normal murine thymocytes and thymus-derived leukemic GRSL cells in water have been performed under physiological isothermal-isobaric conditions (310.15K and 1 atm) to investigate changes in membrane properties induced by canceration. The model membranes used in our calculations for normal and leukemic thymocytes comprised 23 and 25 kinds of lipids, respectively, including phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, phosphatidylinositol, sphingomyelin, lysophospholipids, and cholesterol. The mole fractions of the lipids adopted here were based on previously published experimental values. Our calculations clearly showed that the membrane area was increased in leukemic cells, and that the isothermal area compressibility of the leukemic plasma membranes was double that of normal cells. The calculated membranes of leukemic cells were thus considerably bulkier and softer in the lateral direction compared with those of normal cells. The tilt angle of the cholesterol and the conformation of the phospholipid fatty acid tails both showed a lower level of order in leukemic cell membranes compared with normal cell membranes. The lateral radial distribution function of the lipids also showed a more disordered structure in leukemic cell membranes than in normal cell membranes. These observations all show that, for the present thymocytes, the lateral structure of the membrane is considerably disordered by canceration. Furthermore, the calculated lateral self-diffusion coefficient of the lipid molecules in leukemic cell membranes was almost double that in normal cell membranes. The calculated rotational and wobbling autocorrelation functions also indicated that the molecular motion of the lipids was enhanced in leukemic cell membranes. Thus, here we have demonstrated that the membranes of thymocyte leukemic cells are more disordered and more fluid than normal cell membranes.

  16. Electronic properties of a biased graphene bilayer

    Energy Technology Data Exchange (ETDEWEB)

    Castro, Eduardo V; Lopes dos Santos, J M B [CFP and Departamento de Fisica, Faculdade de Ciencias Universidade do Porto, P-4169-007 Porto (Portugal); Novoselov, K S; Morozov, S V; Geim, A K [Department of Physics and Astronomy, University of Manchester, Manchester M13 9PL (United Kingdom); Peres, N M R [Centre of Physics and Departamento de Fisica, Universidade do Minho, P-4710-057 Braga (Portugal); Nilsson, Johan; Castro Neto, A H [Department of Physics, Boston University, 590 Commonwealth Avenue, Boston, MA 02215 (United States); Guinea, F [Instituto de Ciencia de Materiales de Madrid, CSIC, Cantoblanco, E-28049 Madrid (Spain)

    2010-05-05

    We study, within the tight-binding approximation, the electronic properties of a graphene bilayer in the presence of an external electric field applied perpendicular to the system-a biased bilayer. The effect of the perpendicular electric field is included through a parallel plate capacitor model, with screening correction at the Hartree level. The full tight-binding description is compared with its four-band and two-band continuum approximations, and the four-band model is shown to always be a suitable approximation for the conditions realized in experiments. The model is applied to real biased bilayer devices, made out of either SiC or exfoliated graphene, and good agreement with experimental results is found, indicating that the model is capturing the key ingredients, and that a finite gap is effectively being controlled externally. Analysis of experimental results regarding the electrical noise and cyclotron resonance further suggests that the model can be seen as a good starting point for understanding the electronic properties of graphene bilayer. Also, we study the effect of electron-hole asymmetry terms, such as the second-nearest-neighbour hopping energies t' (in-plane) and {gamma}{sub 4} (inter-layer), and the on-site energy {Delta}.

  17. Electronic properties of a biased graphene bilayer.

    Science.gov (United States)

    Castro, Eduardo V; Novoselov, K S; Morozov, S V; Peres, N M R; Lopes dos Santos, J M B; Nilsson, Johan; Guinea, F; Geim, A K; Castro Neto, A H

    2010-05-01

    We study, within the tight-binding approximation, the electronic properties of a graphene bilayer in the presence of an external electric field applied perpendicular to the system-a biased bilayer. The effect of the perpendicular electric field is included through a parallel plate capacitor model, with screening correction at the Hartree level. The full tight-binding description is compared with its four-band and two-band continuum approximations, and the four-band model is shown to always be a suitable approximation for the conditions realized in experiments. The model is applied to real biased bilayer devices, made out of either SiC or exfoliated graphene, and good agreement with experimental results is found, indicating that the model is capturing the key ingredients, and that a finite gap is effectively being controlled externally. Analysis of experimental results regarding the electrical noise and cyclotron resonance further suggests that the model can be seen as a good starting point for understanding the electronic properties of graphene bilayer. Also, we study the effect of electron-hole asymmetry terms, such as the second-nearest-neighbour hopping energies t' (in-plane) and γ(4) (inter-layer), and the on-site energy Δ.

  18. The impact of cell-penetrating peptides on membrane bilayer structure during binding and insertion.

    Science.gov (United States)

    Hirst, Daniel J; Lee, Tzong-Hsien; Kulkarni, Ketav; Wilce, Jacqueline A; Aguilar, Marie-Isabel

    2016-08-01

    We have studied the effect of penetratin and a truncated analogue on the bilayer structure using dual polarisation interferometry, to simultaneously measure changes in mass per unit area and birefringence (an optical parameter representing bilayer order) with high sensitivity during the binding and dissociation from the membrane. Specifically, we studied penetratin (RQIKIWFQNRRMKWKK), along with a shortened and biotinylated version known as R8K-biotin (RRMKWKKK(Biotin)-NH2). Overall both peptides bound only weakly to the neutral DMPC and POPC bilayers, while much higher binding was observed for the anionic DMPC/DMPG and POPC/POPG. The binding of penetratin to gel-phase DMPC/DMPG was adequately represented by a two-state model, whereas on the fluid-phase POPC/POPG it exhibited a distinctly different binding pattern, best represented by a three-state kinetic model. However, R8K-biotin did not bind well to DMPC/DMPG and showed a more transitory and superficial binding to POPC/POPG. Comparing the modelling results for both peptides binding to POPC/POPG suggests an important role for a securely bound intermediate prior to penetratin insertion and translocation. Overall these results further elucidate the mechanism of penetratin, and provide another example of the significance of the ability of DPI to measure structural changes and the use of kinetic analysis to investigate the stages of peptide-membrane interactions.

  19. Dynamic modeling of fluid power transmissions for wind turbines

    NARCIS (Netherlands)

    Diepeveen, N.F.B.; Jarquin Laguna, A.

    2011-01-01

    Fluid power transmission for wind turbines is quietly gaining more ground/interest. The principle of the various concepts presented so far is to convert aerodynamic torque of the rotor blades into a pressurized fluid flow by means of a positive displacement pump. At the other end of the fluid power

  20. Dynamic modeling of fluid power transmissions for wind turbines

    NARCIS (Netherlands)

    Diepeveen, N.F.B.; Jarquin Laguna, A.

    2011-01-01

    Fluid power transmission for wind turbines is quietly gaining more ground/interest. The principle of the various concepts presented so far is to convert aerodynamic torque of the rotor blades into a pressurized fluid flow by means of a positive displacement pump. At the other end of the fluid power

  1. Model Order Reduction for Fluid Dynamics with Moving Solid Boundary

    Science.gov (United States)

    Gao, Haotian; Wei, Mingjun

    2016-11-01

    We extended the application of POD-Galerkin projection for model order reduction from usual fixed-domain problems to more general fluid-solid systems when moving boundary/interface is involved. The idea is similar to numerical simulation approaches using embedded forcing terms to represent boundary motion and domain change. However, such a modified approach will not get away with the unsteadiness of boundary terms which appear as time-dependent coefficients in the new Galerkin model. These coefficients need to be pre-computed for prescribed motion, or worse, to be computed at each time step for non-prescribed motion. The extra computational cost gets expensive in some cases and eventually undermines the value of using reduced-order models. One solution is to decompose the moving boundary/domain to orthogonal modes and derive another low-order model with fixed coefficients for boundary motion. Further study shows that the most expensive integrations resulted from the unsteady motion (in both original and domain-decomposition approaches) have almost negligible impact on the overall dynamics. Dropping these expensive terms reduces the computation cost by at least one order while no obvious effect on model accuracy is noticed. Supported by ARL.

  2. Modeling of movement-induced and flow-induced fluid forces in fast switching valves

    DEFF Research Database (Denmark)

    Roemer, Daniel Beck; Johansen, Per; Schmidt, Lasse

    2015-01-01

    Fast switching fluid power valves set strict requirements on performance, size and energy efficiency and simulation models are therefore needed to obtain good designs of such components. The valve moving member is subject to fluid forces depending on the valve flow rate and movement of the valve...... valve design. Simulated results of the total fluid force are presented showing the movement-induced fluid force to be significant for a reference application. The model form established is useful for valve designers during development and for accurate operation simulation....... member itself. These fluid forces may be accurately simulated using Computational Fluid Dynamics (CFD) analysis, but such models suffer from being computationally expensive and is not suited for optimization routines. In this paper, a computationally inexpensive method for modeling the fluid forces...

  3. Mathematical modeling for laminar flow of power law fluid in porous media

    Energy Technology Data Exchange (ETDEWEB)

    Silva, Renato A.; Mesquita, Maximilian S. [Universidade Federal do Espirito Santo (UFES), Sao Mateus, ES (Brazil). Centro Universitario Norte do Espirito Santo. Dept. de Engenharias e Computacao

    2010-07-01

    In this paper, the macroscopic equations for laminar power-law fluid flow is obtained for a porous medium starting from traditional equations (Navier-Stokes). Then, the volume averaging is applied in traditional transport equations with the power-law fluid model. This procedure leads to macroscopic transport equations set for non-Newtonian fluid. (author)

  4. A Bingham-Plastic Model for Fluid Mud Transport Under Waves and Currents

    Institute of Scientific and Technical Information of China (English)

    刘春嵘; 吴博; 呼和敖德

    2014-01-01

    Simplified equations of fluid mud motion, which is described as Bingham-Plastic model under waves and currents, are presented by order analysis. The simplified equations are non-linear ordinary differential equations which are solved by hybrid numerical-analytical technique. As the computational cost is very low, the effects of wave current parameters and fluid mud properties on the transportation velocity of the fluid mud are studied systematically. It is found that the fluid mud can move toward one direction even if the shear stress acting on the fluid mud bed is much smaller than the fluid mud yield stress under the condition of wave and current coexistence. Experiments of the fluid mud motion under current with fluctuation water surface are carried out. The fluid mud transportation velocity predicted by the presented mathematical model can roughly match that measured in experiments.

  5. Modeling Chemical Mechanical Polishing with Couple Stress Fluids

    Institute of Scientific and Technical Information of China (English)

    张朝辉; 雒建斌; 温诗铸

    2004-01-01

    Chemical mechanical polishing (CMP) is a manufacturing process used to achieve high levels of global and local planarity.Currently, the slurries used in CMP usually contain nanoscale particles to accelerate the removal ratio and to optimize the planarity, whose rheological properties can no longer be accurately modeled with Newtonian fluids.The Reynolds equation, including the couple stress effects, was derived in this paper.The equation describes the mechanism to solve the CMP lubrication equation with the couple stress effects.The effects on load and moments resulting from the various parameters, such as pivot height, roll angle, and pitch angle, were subsequently simulated.The results show that the couple stress can provide higher load and angular moments.This study sheds some lights into the mechanism of the CMP process.

  6. Modelling the response of a tactile array using electrorheological fluids

    Science.gov (United States)

    Klein, D.; Rensink, D.; Freimuth, H.; Monkman, G. J.; Egersdörfer, S.; Böse, H.; Baumann, M.

    2004-03-01

    This paper reports the first step in the development of a tactile array suitable for the presentation of haptic information in virtual reality. The system is based on the electric field dependence of the viscosity of electrorheological fluids. The simulation, as well as the experimental realization of single tactels is described. The mathematical approach is based on the Eckart model (Eckart W 2000 Continuum Mech. Thermodyn. 12 341-62) and its validity is demonstrated by comparing the resulting yield stress with the experimental results from Wunderlich (2000 Dissertation Universität Erlangen-Nürnberg). Two different tactel designs are realized and the experimental results are compared with numerical simulation. The design of modification B is shown to be applicable for the realization of an actuator array with high spatial resolution.

  7. Modelling the response of a tactile array using electrorheological fluids

    Energy Technology Data Exchange (ETDEWEB)

    Klein, D [Institut fuer Mikrotechnik Mainz GmbH, D-55129 Mainz (Germany); Rensink, D [Institut fuer Mikrotechnik Mainz GmbH, D-55129 Mainz (Germany); Freimuth, H [Institut fuer Mikrotechnik Mainz GmbH, D-55129 Mainz (Germany); Monkman, G J [Fachhochschule Regensburg, D-93049 Regensburg (Germany); Egersdoerfer, S [Fachhochschule Regensburg, D-93049 Regensburg (Germany); Boese, H [Fraunhofer Institute fuer Silicate Forschung, Wuerzburg (Germany); Baumann, M [Fraunhofer Institute fuer Silicate Forschung, Wuerzburg (Germany)

    2004-03-07

    This paper reports the first step in the development of a tactile array suitable for the presentation of haptic information in virtual reality. The system is based on the electric field dependence of the viscosity of electrorheological fluids. The simulation, as well as the experimental realization of single tactels is described. The mathematical approach is based on the Eckart model (Eckart W 2000 Continuum Mech. Thermodyn. 12 341-62) and its validity is demonstrated by comparing the resulting yield stress with the experimental results from Wunderlich (2000 Dissertation Universitaet Erlangen-Nuernberg). Two different tactel designs are realized and the experimental results are compared with numerical simulation. The design of modification B is shown to be applicable for the realization of an actuator array with high spatial resolution.

  8. COTHERM: Modelling fluid-rock interactions in Icelandic geothermal systems

    Science.gov (United States)

    Thien, Bruno; Kosakowski, Georg; Kulik, Dmitrii

    2014-05-01

    Mineralogical alteration of reservoir rocks, driven by fluid circulation in natural or enhanced geothermal systems, is likely to influence the long-term performance of geothermal power generation. A key factor is the change of porosity due to dissolution of primary minerals and precipitation of secondary phases. Porosity changes will affect fluid circulation and solute transport, which, in turn, influence mineralogical alteration. This study is part of the Sinergia COTHERM project (COmbined hydrological, geochemical and geophysical modeling of geotTHERMal systems) that is an integrative research project aimed at improving our understanding of the sub-surface processes in magmatically-driven natural geothermal systems. We model the mineralogical and porosity evolution of Icelandic geothermal systems with 1D and 2D reactive transport models. These geothermal systems are typically high enthalphy systems where a magmatic pluton is located at a few kilometers depth. The shallow plutons increase the geothermal gradient and trigger the circulation of hydrothermal waters with a steam cap forming at shallow depth. We investigate two contrasting geothermal systems: Krafla, for which the water recharge consists of meteoritic water; and Reykjanes, for which the water recharge mainly consists of seawater. The initial rock composition is a fresh basalt. We use the GEM-Selektor geochemical modeling package [1] for calculation of kinetically controlled mineral equilibria between the rock and the ingression water. We consider basalt minerals dissolution kinetics according to Palandri & Kharaka [2]. Reactive surface areas are assumed to be geometric surface areas, and are corrected using a spherical-particle surface/mass relationship. For secondary minerals, we consider the partial equilibrium assuming that the primary mineral dissolution is slow, and the secondary mineral precipitation is fast. Comparison of our modeling results with the mineralogical assemblages observed in the

  9. Butler-Sugimoto monomolecular bilayer interface model: the effect of oxygen on the surface tension of a liquid metal and its wetting of a ceramic.

    Science.gov (United States)

    Yen, Pei-Shan; Datta, Ravindra

    2014-07-15

    The influence of oxygen on liquid-gas surface tension of molten metals has been well-investigated experimentally and modeled theoretically via the Szyszkowski equation, derivable from the Butler molecular monolayer interface model. However, there is no corresponding model describing the experimentally observed profound effect of oxygen partial pressure on solid-liquid surface tension as well as on contact angle of molten metals on ceramic substrates. Here, we utilize the Butler-Sugimoto thermodynamic approach based on a monomolecular bilayer interface model to investigate the effect of oxygen partial pressure on liquid-gas as well as solid-liquid surface tension of molten Cu/Al2O3 and molten Ag/Al2O3 systems. It is shown that both liquid-gas and solid-liquid surface tension are a strong function of oxygen activity in the melt, which, in turn, depends on gas-phase oxygen partial pressure, in conformity with experiments. The change in solid-liquid surface tension and wetting is also greatly affected by the change in liquid-gas surface tension. This improved understanding is of practical significance in many applications.

  10. Critical Analysis of Underground Coal Gasification Models. Part II: Kinetic and Computational Fluid Dynamics Models

    Directory of Open Access Journals (Sweden)

    Alina Żogała

    2014-01-01

    Originality/value: This paper presents state of art in the field of coal gasification modeling using kinetic and computational fluid dynamics approach. The paper also presents own comparative analysis (concerned with mathematical formulation, input data and parameters, basic assumptions, obtained results etc. of the most important models of underground coal gasification.

  11. Spin dynamics of bilayer manganites

    Indian Academy of Sciences (India)

    Tapan Chatterji

    2004-07-01

    The results of inelastic and quasi-elastic neutron scattering investigations on the 40% hole-doped quasi-2D bilayer manganites La1.2Sr1.8Mn2O7 have been reviewed. The complete set of exchange interactions have been determined on the basis of a localized Heisenberg model. However, the spin wave dispersion in La1.2Sr1.8Mn2O7 shows softening close to the zone boundary and are also heavily damped especially close to the zone boundary and deviate from that expected for a simple Heisenberg model. A minimal double exchange model including quantum corrections can reproduce these effects qualitatively but falls short of quantitative agreement.

  12. Stokes' first problem for a viscoelastic fluid with the generalized Oldroyd-B model

    Institute of Scientific and Technical Information of China (English)

    Haitao Qi; Mingyu Xu

    2007-01-01

    The flow near a wall suddenly set in motion for a viscoelastic fluid with the generalized Oldroyd-B model is studied. The fractional calculus approach is used in the constitutive relationship of fluid model. Exact analytical solutions of velocity and stress are obtained by using the discrete Laplace transform of the sequential fractional derivative and the Fox H-function. The obtained results indicate that some well known solutions for the Newtonian fluid, the generalized second grade fluid as well as the ordinary Oldroyd-B fluid, as limiting cases, are included in our solutions.

  13. Fluid versus global model approach for the modeling of active species production by streamer discharge

    Science.gov (United States)

    Levko, Dmitry; Raja, Laxminarayan L.

    2017-03-01

    In this paper, we seek to validate the zero-dimensional (global) model approach for the modeling of the plasma composition in high pressure reactive streamer discharges. We focus on streamers typical of dielectric barrier discharge that are widely used, for instance, for plasma-assisted reforming of greenhouse gases. However, our conclusions can be extended to the streamers used in plasma-assisted ignition/combustion and other related systems. First, we perform two-dimensional fluid simulations for streamers with positive and negative trigger voltages and analyze the difference between the breakdown mechanisms of these two modes. Second, we use the time evolution of the electron heating term obtained from the fluid simulations as the input parameter of the global model and compare the plasma component content predicted by this model with the results of the fluid model. We obtain a very good agreement between fluid and global models for all species generated in plasma. However, we conclude that streamers initiated by the positive and negative trigger voltage cannot be considered as symmetrical which is usually done in global models of barrier discharge reactors.

  14. Two-compartment model of radioimmunotherapy delivered through cerebrospinal fluid

    Energy Technology Data Exchange (ETDEWEB)

    He, Ping [Johns Hopkins University, Department of Biomedical Engineering, Baltimore, MD (United States); Kramer, Kim; Cheung, Nai-Kong V. [Memorial Sloan-Kettering Cancer Center, Department of Pediatrics, New York, NY (United States); Smith-Jones, Peter; Larson, Steven M. [Memorial Sloan-Kettering Cancer Center, Department of Radiology, New York, NY (United States); Zanzonico, Pat; Humm, John [Memorial Sloan-Kettering Cancer Center, Department of Medical Physics, New York, NY (United States)

    2011-02-15

    Radioimmunotherapy (RIT) using {sup 131}I-3F8 injected into cerebrospinal fluid (CSF) was a safe modality for the treatment of leptomeningeal metastases (JCO, 25:5465, 2007). A single-compartment pharmacokinetic model described previously (JNM 50:1324, 2009) showed good fitting to the CSF radioactivity data obtained from patients. We now describe a two-compartment model to account for the ventricular reservoir of {sup 131}I-3F8 and to identify limiting factors that may impact therapeutic ratio. Each parameter was examined for its effects on (1) the area under the radioactivity concentration curve of the bound antibody (AUC[C{sub IAR}]), (2) that of the unbound antibody AUC[C{sub IA}], and (3) their therapeutic ratio (AUC[C{sub IAR}]/AUC[C{sub IA}]). Data fitting showed that CSF kBq/ml data fitted well using the two-compartment model (R = 0.95 {+-} 0.03). Correlations were substantially better when compared to the one-compartment model (R = 0.92 {+-} 0.11 versus 0.77 {+-} 0.21, p = 0.005). In addition, we made the following new predictions: (1) Increasing immunoreactivity of {sup 131}I-3F8 from 10% to 90% increased both (AUC[C{sub IAR}]) and therapeutic ratio (AUC[C{sub IAR}]/AUC[C{sub IA}]) by 7.4 fold, (2) When extrapolated to the clinical setting, the model predicted that if {sup 131}I-3F8 could be split into 4 doses of 1.4 mg each and given at {>=}24 hours apart, an antibody affinity of K{sub D} of 4 x 10{sup -9} at 50% immunoreactivity were adequate in order to deliver {>=}100 Gy to tumor cells while keeping normal CSF exposure to <10 Gy. This model predicted that immunoreactivity, affinity and optimal scheduling of antibody injections were crucial in improving therapeutic index. (orig.)

  15. A fully dynamic magneto-rheological fluid damper model

    Science.gov (United States)

    Jiang, Z.; Christenson, R. E.

    2012-06-01

    Control devices can be used to dissipate the energy of a civil structure subjected to dynamic loading, thus reducing structural damage and preventing failure. Semiactive control devices have received significant attention in recent years. The magneto-rheological (MR) fluid damper is a promising type of semiactive device for civil structures due to its mechanical simplicity, inherent stability, high dynamic range, large temperature operating range, robust performance, and low power requirements. The MR damper is intrinsically nonlinear and rate-dependent, both as a function of the displacement across the MR damper and the command current being supplied to the MR damper. As such, to develop control algorithms that take maximum advantage of the unique features of the MR damper, accurate models must be developed to describe its behavior for both displacement and current. In this paper, a new MR damper model that includes a model of the pulse-width modulated (PWM) power amplifier providing current to the damper, a proposed model of the time varying inductance of the large-scale 200 kN MR dampers coils and surrounding MR fluid—a dynamic behavior that is not typically modeled—and a hyperbolic tangent model of the controllable force behavior of the MR damper is presented. Validation experimental tests are conducted with two 200 kN large-scale MR dampers located at the Smart Structures Technology Laboratory (SSTL) at the University of Illinois at Urbana-Champaign and the Lehigh University Network for Earthquake Engineering Simulation (NEES) facility. Comparison with experimental test results for both prescribed motion and current and real-time hybrid simulation of semiactive control of the MR damper shows that the proposed MR damper model can accurately predict the fully dynamic behavior of the large-scale 200 kN MR damper.

  16. Numerical Modeling of Porous Structure of Biomaterial and Fluid Flowing Through Biomaterial

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    A Cellular Automata model of simulating body fluid flowing into porous bioceramic implants generated with stochastic methods is described, of which main parameters and evolvement rule are determined in terms of flow behavior of body fluid in porous biomaterials. The model is implemented by GUI( Graphical User Interface) program in MATLAB, and the results of numerical modeling show that the body fluid percolation is related to the size of pores and porosity.

  17. The Blended Finite Element Method for Multi-fluid Plasma Modeling

    Science.gov (United States)

    2016-07-01

    Briefing Charts 3. DATES COVERED (From - To) 07 June 2016 - 01 July 2016 4. TITLE AND SUBTITLE The Blended Finite Element Method for Multi-fluid Plasma ...BLENDED FINITE ELEMENT METHOD FOR MULTI-FLUID PLASMA MODELING Éder M. Sousa1, Uri Shumlak2 1ERC INC., IN-SPACE PROPULSION BRANCH (RQRS) AIR FORCE RESEARCH...MULTI-FLUID PLASMA MODEL 2 BLENDED FINITE ELEMENT METHOD Blended Finite Element Method Nodal Continuous Galerkin Modal Discontinuous Galerkin Model

  18. Slowly rotating superfluid neutron stars with isospin dependent entrainment in a two-fluid model

    CERN Document Server

    Kheto, Apurba

    2015-01-01

    We investigate the slowly rotating general relativistic superfluid neutron stars including the entrainment effect in a two-fluid model, where one fluid represents the superfluid neutrons and the other is the charge-neutral fluid called the proton fluid, made of protons and electrons. The equation of state and the entrainment effect between the superfluid neutrons and the proton fluid are computed using a relativistic mean field (RMF) model where baryon-baryon interaction is mediated by the exchange of $\\sigma$, $\\omega$, and $\\rho$ mesons and scalar self interactions are also included. The equations governing rotating neutron stars in the slow rotation approximation are second order in rotational velocities of neutron and proton fluids. We explore the effects of the isospin dependent entrainment and the relative rotation between two fluids on the global properties of rotating superfluid neutron stars such as mass, shape, and the mass shedding (Kepler) limit within the RMF model with different parameter sets. ...

  19. A fluid-mechanical model of elastocapillary coalescence

    KAUST Repository

    Singh, Kiran

    2014-03-25

    © 2014 Cambridge University Press. We present a fluid-mechanical model of the coalescence of a number of elastic objects due to surface tension. We consider an array of spring-block elements separated by thin liquid films, whose dynamics are modelled using lubrication theory. With this simplified model of elastocapillary coalescence, we present the results of numerical simulations for a large number of elements, N = O(104). A linear stability analysis shows that pairwise coalescence is always the most unstable mode of deformation. However, the numerical simulations show that the cluster sizes actually produced by coalescence from a small white-noise perturbation have a distribution that depends on the relative strength of surface tension and elasticity, as measured by an elastocapillary number K. Both the maximum cluster size and the mean cluster size scale like K-1/2 for small K. An analytical solution for the response of the system to a localized perturbation shows that such perturbations generate propagating disturbance fronts, which leave behind \\'frozen-in\\' clusters of a predictable size that also depends on K. A good quantitative comparison between the cluster-size statistics from noisy perturbations and this \\'frozen-in\\' cluster size suggests that propagating fronts may play a crucial role in the dynamics of coalescence.

  20. Computational fluid dynamics framework for aerodynamic model assessment

    Science.gov (United States)

    Vallespin, D.; Badcock, K. J.; Da Ronch, A.; White, M. D.; Perfect, P.; Ghoreyshi, M.

    2012-07-01

    This paper reviews the work carried out at the University of Liverpool to assess the use of CFD methods for aircraft flight dynamics applications. Three test cases are discussed in the paper, namely, the Standard Dynamic Model, the Ranger 2000 jet trainer and the Stability and Control Unmanned Combat Air Vehicle. For each of these, a tabular aerodynamic model based on CFD predictions is generated along with validation against wind tunnel experiments and flight test measurements. The main purpose of the paper is to assess the validity of the tables of aerodynamic data for the force and moment prediction of realistic aircraft manoeuvres. This is done by generating a manoeuvre based on the tables of aerodynamic data, and then replaying the motion through a time-accurate computational fluid dynamics calculation. The resulting forces and moments from these simulations were compared with predictions from the tables. As the latter are based on a set of steady-state predictions, the comparisons showed perfect agreement for slow manoeuvres. As manoeuvres became more aggressive some disagreement was seen, particularly during periods of large rates of change in attitudes. Finally, the Ranger 2000 model was used on a flight simulator.

  1. A fluid-mechanical model of elastocapillary coalescence

    CERN Document Server

    Singh, Kiran; Vella, Dominic

    2013-01-01

    We present a fluid-mechanical model of the coalescence of a number of elastic objects due to surface tension. We consider an array of spring-block elements separated by thin liquid films, whose dynamics are modelled using lubrication theory. With this simplified model of elastocapillary coalescence, we present the results of numerical simulations for a large number of elements, $N=O(10^4)$. A linear stability analysis shows that pairwise coalescence is always the most unstable mode of deformation. However, the numerical simulations show that the cluster sizes actually produced by coalescence from a small white-noise perturbation have a distribution that depends on the relative strength of surface tension and elasticity, as measured by an elastocapillary number $K$. Both the maximum cluster size and the mean cluster size scale like $K^{-1/2}$ for small $K$. An analytical solution for the response of the system to a localized perturbation shows that such perturbations generate propagating disturbance fronts, wh...

  2. Collisional transport across the magnetic field in drift-fluid models

    CERN Document Server

    Madsen, Jens; Nielsen, Anders Henry; Rasmussen, Jens Juul

    2015-01-01

    Drift ordered fluid models are widely applied in studies of low-frequency turbulence in the edge and scrape-off layer regions of magnetically confined plasmas. Here, we show how collisional transport across the magnetic field is self-consistently incorporated into drift-fluid models without altering the drift-fluid energy integral. We demonstrate that the inclusion of collisional transport in drift-fluid models gives rise to diffusion of particle density, momentum and pressures in drift-fluid turbulence models and thereby obviate the customary use of artificial diffusion in turbulence simulations. We further derive a computationally efficient, two-dimensional model which can be time integrated for several turbulence de-correlation times using only limited computational resources. The model describes interchange turbulence in a two-dimensional plane perpendicular to the magnetic field located at the outboard midplane of a tokamak. The model domain has two regions modeling open and closed field lines. The model...

  3. Fluid-structure interactions models, analysis and finite elements

    CERN Document Server

    Richter, Thomas

    2017-01-01

    This book starts by introducing the fundamental concepts of mathematical continuum mechanics for fluids and solids and their coupling. Special attention is given to the derivation of variational formulations for the subproblems describing fluid- and solid-mechanics as well as the coupled fluid-structure interaction problem. Two monolithic formulations for fluid-structure interactions are described in detail: the well-established ALE formulation and the modern Fully Eulerian formulation, which can effectively deal with problems featuring large deformation and contact. Further, the book provides details on state-of-the-art discretization schemes for fluid- and solid-mechanics and considers the special needs of coupled problems with interface-tracking and interface-capturing techniques. Lastly, advanced topics like goal-oriented error estimation, multigrid solution and gradient-based optimization schemes are discussed in the context of fluid-structure interaction problems.

  4. Bifurcation of self-folded polygonal bilayers

    Science.gov (United States)

    Abdullah, Arif M.; Braun, Paul V.; Hsia, K. Jimmy

    2017-09-01

    Motivated by the self-assembly of natural systems, researchers have investigated the stimulus-responsive curving of thin-shell structures, which is also known as self-folding. Self-folding strategies not only offer possibilities to realize complicated shapes but also promise actuation at small length scales. Biaxial mismatch strain driven self-folding bilayers demonstrate bifurcation of equilibrium shapes (from quasi-axisymmetric doubly curved to approximately singly curved) during their stimulus-responsive morphing behavior. Being a structurally instable, bifurcation could be used to tune the self-folding behavior, and hence, a detailed understanding of this phenomenon is appealing from both fundamental and practical perspectives. In this work, we investigated the bifurcation behavior of self-folding bilayer polygons. For the mechanistic understanding, we developed finite element models of planar bilayers (consisting of a stimulus-responsive and a passive layer of material) that transform into 3D curved configurations. Our experiments with cross-linked Polydimethylsiloxane samples that change shapes in organic solvents confirmed our model predictions. Finally, we explored a design scheme to generate gripper-like architectures by avoiding the bifurcation of stimulus-responsive bilayers. Our research contributes to the broad field of self-assembly as the findings could motivate functional devices across multiple disciplines such as robotics, artificial muscles, therapeutic cargos, and reconfigurable biomedical devices.

  5. Special-relativistic model flows of viscous fluid

    CERN Document Server

    Rogava, A D

    1996-01-01

    Two, the most simple cases of special-relativistic flows of a viscous, incompressible fluid are considered: plane Couette flow and plane Poiseuille flow. Considering only the regular motion of the fluid we found the distribution of velocity in the fluid (velocity profiles) and the friction force, acting on immovable wall. The results are expressed through simple analytical functions for the Couette flow, while for the Poiseiulle flow they are expressed by higher transcendental functions (Jacobi's elliptic functions).

  6. Advanced Fluid Reduced Order Models for Compressible Flow.

    Energy Technology Data Exchange (ETDEWEB)

    Tezaur, Irina Kalashnikova; Fike, Jeffrey A.; Carlberg, Kevin Thomas; Barone, Matthew F.; Maddix, Danielle; Mussoni, Erin E.; Balajewicz, Maciej (UIUC)

    2017-09-01

    This report summarizes fiscal year (FY) 2017 progress towards developing and implementing within the SPARC in-house finite volume flow solver advanced fluid reduced order models (ROMs) for compressible captive-carriage flow problems of interest to Sandia National Laboratories for the design and qualification of nuclear weapons components. The proposed projection-based model order reduction (MOR) approach, known as the Proper Orthogonal Decomposition (POD)/Least- Squares Petrov-Galerkin (LSPG) method, can substantially reduce the CPU-time requirement for these simulations, thereby enabling advanced analyses such as uncertainty quantification and de- sign optimization. Following a description of the project objectives and FY17 targets, we overview briefly the POD/LSPG approach to model reduction implemented within SPARC . We then study the viability of these ROMs for long-time predictive simulations in the context of a two-dimensional viscous laminar cavity problem, and describe some FY17 enhancements to the proposed model reduction methodology that led to ROMs with improved predictive capabilities. Also described in this report are some FY17 efforts pursued in parallel to the primary objective of determining whether the ROMs in SPARC are viable for the targeted application. These include the implemen- tation and verification of some higher-order finite volume discretization methods within SPARC (towards using the code to study the viability of ROMs on three-dimensional cavity problems) and a novel structure-preserving constrained POD/LSPG formulation that can improve the accuracy of projection-based reduced order models. We conclude the report by summarizing the key takeaways from our FY17 findings, and providing some perspectives for future work.

  7. Theoretical models for fluid thermodynamics based on the quasi-Gaussian entropy theory

    NARCIS (Netherlands)

    Amadei, Andrea

    1998-01-01

    Summary The theoretical modeling of fluid thermodynamics is one of the most challenging fields in physical chemistry. In fact the fluid behavior, except at very low density conditions, is still extremely difficult to be modeled from a statistical mechanical point of view, as for any realistic model

  8. Thermodynamic Property Model of Wide-Fluid Phase Propane

    Directory of Open Access Journals (Sweden)

    I Made Astina

    2007-05-01

    Full Text Available A new thermodynamic property model for propane is expressed in form of the Helmholtz free energy function. It consists of eight terms of the ideal-gas part and eighteen terms of the residual part. Accurate experimental data of fluid properties and theoretical approach from the intermolecular potential were simultaneously considered in the development to insure accuracy and to improve reliability of the equation of state over wide range of pressures and temperatures. Based on the state range of experimental data used in the model development, the validity range is judged from the triple-point of 85.48 K to temperature of 450 K and pressure up to 60 MPa. The uncertainties with respect to different properties are estimated to be 0.03% in ideal-gas isobaric specific heat, 0.2% in liquid phase density, 0.3% in gaseous phase density 1% in specific heats, 0.1% in vapor-pressure except at very low temperatures, 0.05% in saturated-liquid density, 0.02% in speed of sound of the gaseous phase and 1% in speed of sound of the liquid phase.

  9. Multiphysical modelling of fluid transport through osteo-articular media

    Directory of Open Access Journals (Sweden)

    Thibault Lemaire

    2010-03-01

    Full Text Available In this study, a multiphysical description of fluid transport through osteo-articular porous media is presented. Adapted from the model of Moyne and Murad, which is intended to describe clayey materials behaviour, this multiscale modelling allows for the derivation of the macroscopic response of the tissue from microscopical information. First the model is described. At the pore scale, electrohydrodynamics equations governing the electrolyte movement are coupled with local electrostatics (Gauss-Poisson equation, and ionic transport equations. Using a change of variables and an asymptotic expansion method, the macroscopic description is carried out. Results of this model are used to show the importance of couplings effects on the mechanotransduction of compact bone remodelling.Neste estudo uma descrição multifísica do transporte de fluidos em meios porosos osteo articulares é apresentada. Adaptado a partir do modelo de Moyne e Murad proposto para descrever o comportamento de materiais argilosos a modelagem multiescala permite a derivação da resposta macroscópica do tecido a partir da informação microscópica. Na primeira parte o modelo é apresentado. Na escala do poro as equações da eletro-hidrodinâmica governantes do movimento dos eletrolitos são acopladas com a eletrostática local (equação de Gauss-Poisson e as equações de transporte iônico. Usando uma mudança de variáveis e o método de expansão assintótica a derivação macroscópica é conduzida. Resultados do modelo proposto são usados para salientar a importância dos efeitos de acoplamento sobre a transdução mecânica da remodelagem de ossos compactados.

  10. Stochastic Surrogates for Measurements and Computer Models of Fluids

    NARCIS (Netherlands)

    De Baar, J.H.S.

    2014-01-01

    Both measurements and computer simulations of fluids introduce a prediction problem. A Particle Image Velocimetry (PIV) measurement of a flow field results in a discrete grid of velocity vectors, from which we aim to predict the velocity field or related quantities. In Computational Fluid Dynamics (

  11. Reconstitution of rhodopsin into polymerizable planar supported lipid bilayers: influence of dienoyl monomer structure on photoactivation.

    Science.gov (United States)

    Subramaniam, Varuni; D'Ambruoso, Gemma D; Hall, H K; Wysocki, Ronald J; Brown, Michael F; Saavedra, S Scott

    2008-10-07

    G-protein-coupled receptors (GPCRs) play key roles in cellular signal transduction and many are pharmacologically important targets for drug discovery. GPCRs can be reconstituted in planar supported lipid bilayers (PSLBs) with retention of activity, which has led to development of GPCR-based biosensors and biochips. However, PSLBs composed of natural lipids lack the high stability desired for many technological applications. One strategy is to use synthetic lipid monomers that can be polymerized to form robust bilayers. A key question is how lipid polymerization affects GPCR structure and activity. Here we have investigated the photochemical activity of bovine rhodopsin (Rho), a model GPCR, reconstituted into PSLBs composed of lipids having one or two polymerizable dienoyl moieties located in different regions of the acyl chains. Plasmon waveguide resonance spectroscopy was used to compare the degree of Rho photoactivation in fluid and poly(lipid) PSLBs. The position of the dienoyl moiety was found to have a significant effect: polymerization near the glycerol backbone significantly attenuates Rho activity whereas polymerization near the acyl chain termini does not. Differences in cross-link density near the acyl chain termini also do not affect Rho activity. In unpolymerized PSLBs, an equimolar mixture of phosphatidylethanolamine and phosphatidylcholine (PC) lipids enhances activity relative to pure PC; however after polymerization, the enhancement is eliminated which is attributed to stabilization of the membrane lamellar phase. These results should provide guidance for the design of robust lipid bilayers functionalized with transmembrane proteins for use in membrane-based biochips and biosensors.

  12. Unsteady flow of viscoelastic fluid between two cylinders using fractional Maxwell model

    Institute of Scientific and Technical Information of China (English)

    Muhammad Jamil; Constantin Fetecau; Corina Fetecau

    2012-01-01

    The unsteady flow of an incompressible fractional Maxwell fluid between two infinite coaxial cylinders is studied by means of integral transforms.The motion of the fluid is due to the inner cylinder that applies a time dependent torsional shear to the fluid.The exact solutions for velocity and shear stress are presented in series form in terms of some generalized functions.They can easily be particularized to give similar solutions for Maxwell and Newtonian fluids.Finally,the influence of pertinent parameters on the fluid motion,as well as a comparison between models,is highlighted by graphical illustrations.

  13. Capacitance Variation of Electrolyte-Gated Bilayer Graphene Based Transistors

    Directory of Open Access Journals (Sweden)

    Hediyeh Karimi

    2013-01-01

    Full Text Available Quantum capacitance of electrolyte-gated bilayer graphene field-effect transistors is investigated in this paper. Bilayer graphene has received huge attention due to the fact that an energy gap could be opened by chemical doping or by applying external perpendicular electric field. So, this extraordinary property can be exploited to use bilayer graphene as a channel in electrolyte-gated field-effect transistors. The quantum capacitance of bi-layer graphene with an equivalent circuit is presented, and also based on the analytical model a numerical solution is reported. We begin by modeling the DOS, followed by carrier concentration as a function V in degenerate and nondegenerate regimes. To further confirm this viewpoint, the presented analytical model is compared with experimental data, and acceptable agreement is reported.

  14. Tethered and Polymer Supported Bilayer Lipid Membranes: Structure and Function

    Directory of Open Access Journals (Sweden)

    Jakob Andersson

    2016-05-01

    Full Text Available Solid supported bilayer lipid membranes are model systems to mimic natural cell membranes in order to understand structural and functional properties of such systems. The use of a model system allows for the use of a wide variety of analytical tools including atomic force microscopy, impedance spectroscopy, neutron reflectometry, and surface plasmon resonance spectroscopy. Among the large number of different types of model membranes polymer-supported and tethered lipid bilayers have been shown to be versatile and useful systems. Both systems consist of a lipid bilayer, which is de-coupled from an underlying support by a spacer cushion. Both systems will be reviewed, with an emphasis on the effect that the spacer moiety has on the bilayer properties.

  15. Model Checking for a Class of Performance Properties of Fluid Stochastic Models

    NARCIS (Netherlands)

    Bujorianu, L.M.; Bujorianu, M.C.; Horváth, A.; Telek, M.

    2006-01-01

    Recently, there is an explosive development of fluid approa- ches to computer and distributed systems. These approaches are inherently stochastic and generate continuous state space models. Usually, the performance measures for these systems are defined using probabilities of reaching certain sets o

  16. Nanoparticle-lipid bilayer interactions studied with lipid bilayer arrays

    Science.gov (United States)

    Lu, Bin; Smith, Tyler; Schmidt, Jacob J.

    2015-04-01

    The widespread environmental presence and commercial use of nanoparticles have raised significant health concerns as a result of many in vitro and in vivo assays indicating toxicity of a wide range of nanoparticle species. Many of these assays have identified the ability of nanoparticles to damage cell membranes. These interactions can be studied in detail using artificial lipid bilayers, which can provide insight into the nature of the particle-membrane interaction through variation of membrane and solution properties not possible with cell-based assays. However, the scope of these studies can be limited because of the low throughput characteristic of lipid bilayer platforms. We have recently described an easy to use, parallel lipid bilayer platform which we have used to electrically investigate the activity of 60 nm diameter amine and carboxyl modified polystyrene nanoparticles (NH2-NP and COOH-NP) with over 1000 lipid bilayers while varying lipid composition, bilayer charge, ionic strength, pH, voltage, serum, particle concentration, and particle charge. Our results confirm recent studies finding activity of NH2-NP but not COOH-NP. Detailed analysis shows that NH2-NP formed pores 0.3-2.3 nm in radius, dependent on bilayer and solution composition. These interactions appear to be electrostatic, as they are regulated by NH2-NP surface charge, solution ionic strength, and bilayer charge. The ability to rapidly measure a large number of nanoparticle and membrane parameters indicates strong potential of this bilayer array platform for additional nanoparticle bilayer studies.The widespread environmental presence and commercial use of nanoparticles have raised significant health concerns as a result of many in vitro and in vivo assays indicating toxicity of a wide range of nanoparticle species. Many of these assays have identified the ability of nanoparticles to damage cell membranes. These interactions can be studied in detail using artificial lipid bilayers, which

  17. Collisional transport across the magnetic field in drift-fluid models

    DEFF Research Database (Denmark)

    Madsen, Jens; Naulin, Volker; Nielsen, Anders Henry

    2016-01-01

    Drift ordered fluid models are widely applied in studies of low-frequency turbulence in the edge and scrape-off layer regions of magnetically confined plasmas. Here, we show how collisional transport across the magnetic field is self-consistently incorporated into drift-fluid models without...... altering the drift-fluid energy integral. We demonstrate that the inclusion of collisional transport in drift-fluid models gives rise to diffusion of particle density, momentum, and pressures in drift-fluid turbulence models and, thereby, obviates the customary use of artificial diffusion in turbulence...... simulations. We further derive a computationally efficient, two-dimensional model, which can be time integrated for several turbulence de-correlation times using only limited computational resources. The model describes interchange turbulence in a two-dimensional plane perpendicular to the magnetic field...

  18. Kantowski-Sachs Einstein-aether perfect fluid models

    CERN Document Server

    Latta, Joey

    2016-01-01

    We investigate Kantowski-Sachs models in Einstein-aether theory with a perfect fluid source using dynamical system tools. We find an inflationary source at early times, and an inflationary sink at late times, for a wide region in the parameter space. The results by A. A. Coley, G. Leon, P. Sandin and J. Latta, JCAP {\\bf 12}, 010 (2015) are then re-obtained as particular cases. Additionally, we select other values for non-GR parameters which are consistent with current constraints, getting a very rich phenomenology. Particularly, we find solutions with infinite shearing, zero curvature, and infinity matter energy density in comparison with the Hubble scalar. We also have stiff-like future attractors, anisotropic late-time attractors, or both, in some special cases. Such results are developed analytically, and then verified by numerics. From the cosmological point of view, the more interesting fixed points are those representing accelerated solutions. However, the accelerated solutions do not isotropize, and th...

  19. Modelling and Understanding of Highly Energy Efficient Fluids

    CERN Document Server

    Thamali, R J K A; Liyanage, D D; Ukwatta, Ajith; Hewage, Jinasena; Witharana, Sanjeeva

    2016-01-01

    Conventional heat carrier liquids have demonstrated remarkable enhancement in heat and mass transfer when nanoparticles were suspended in them. These liquid-nanoparticle suspensions are now known as Nanofluids. However the relationship between nanoparticles and the degree of enhancement is still unclear, thus hindering the large scale manufacturing of them. Understanding of the energy and flow behaviour of nanofluids is therefore of wide interest in both academic and industrial context. In this paper we first model the heat transfer of a nanofluid in convection in a circular tube at macro-scale by using CFD code of OpenFoam. Then we zoon into nano-scale behaviour using the Molecular Dynamics (MD) simulation. In the latter we considered a system of water and Gold nanoparticles. A systematic increase of convective heat transfer was observed with increasing nanoparticle concentration. A maximum enhancement of 7.0% was achieved in comparison to base fluid water. This occurred when the gold volume fraction was 0.0...

  20. Kantowski-Sachs Einstein-æther perfect fluid models

    Science.gov (United States)

    Latta, Joey; Leon, Genly; Paliathanasis, Andronikos

    2016-11-01

    We investigate Kantowski-Sachs models in Einstein-æ ther theory with a perfect fluid source using the singularity analysis to prove the integrability of the field equations and dynamical system tools to study the evolution. We find an inflationary source at early times, and an inflationary sink at late times, for a wide region in the parameter space. The results by A.A. Coley, G. Leon, P. Sandin and J. Latta (JCAP 12 (2015) 010), are then re-obtained as particular cases. Additionally, we select other values for the non-GR parameters which are consistent with current constraints, getting a very rich phenomenology. In particular, we find solutions with infinite shear, zero curvature, and infinite matter energy density in comparison with the Hubble scalar. We also have stiff-like future attractors, anisotropic late-time attractors, or both, in some special cases. Such results are developed analytically, and then verified by numerics. Finally, the physical interpretation of the new critical points is discussed.

  1. HEAVY TRAFFIC LIMIT THEOREMS IN FLUID BUFFER MODELS

    Institute of Scientific and Technical Information of China (English)

    YIN Gang; ZHANG Hanqin

    2004-01-01

    A fluid buffer model with Markov modulated input-output rates is considered.When traffic intensity is near its critical value, the system is known as in heavy traffic.It is shown that a suitably scaled sequence of the equilibrium buffer contents has a weakor distributional limit under heavy traffic conditionsThis weak limit is a functional of adiffusion process determined by the Markov chain modulating the input and output rates.The first passage time of the reflected process is examinedIt is shown that the mean firstpassage time can be obtained via a solution of a Dirichlet problemThen the transitiondensity of the reflected process is derived by solving the Kolmogorov forward equation witha Neumann boundary conditionFurthermore, when the fast changing part of the generatorof the Markov chain is a constant matrix, the representation of the probability distributionof the reflected process is derivedUpper and lower bounds of the probability distributionare also obtained by means of asymptotic expansions of standard normal distribution.

  2. A Simple Family of Models for Eccentric Keplerian Fluid Disks

    CERN Document Server

    Statler, T S

    2001-01-01

    In order to be in a long-lived configuration, the density in a fluid disk should be constant along streamlines to prevent compressional (PdV) work from being done cyclically around every orbit. In a pure Kepler potential, flow along aligned, elliptical streamlines of constant eccentricity will satisfy this condition. For most density profiles, differential precession driven by the pressure gradient will destroy the alignment; however, in the razor-thin approximation there is a family of simple equilibria in which the precession frequency is the same at all radii. These disks may therefore be long-lived at significant eccentricities. The density can be made axisymmetric as r goes to 0, while maintaining the precession rate, by relaxing the requirement of constancy along streamlines in an arbitrarily small transition region near the center. In the limit of small eccentricity, the models can be seen as acoustically perturbed axisymmetric disks, and the precession rate is shown to agree with linear theory. The pe...

  3. a Bilayer Model for Incorporating the Simultaneous Effects of Surface Energy and Microstructure Size Dependency on the Dynamic Response and Stability of Electromechanical Nanocantilevers

    Science.gov (United States)

    Keivani, Maryam; Koochi, Ali; Kanani, Abolfazl; Abadyan, Mohamadreza

    2016-05-01

    Nanoscale beams might not be considered uniform isotropic since the energy of the surface layer and microstructure of the bulk material highly affect the mechanical characteristics of the beams. Herein, the simultaneous effects of energy of the surface and microstructure of the bulk on the dynamic response and stability of beam-type electromechanical nanocantilevers are investigated. A bilayer model has been developed which incorporates the strain energy of the surface atoms as well as the microstructure-dependent strain energy of the bulk. The Gurtin-Murdoch surface elasticity in conjunction with the modified couple stress theory (MCST) is applied to derive the governing equation. Since the classical assumption for zero normal surface stresses is not consistent with the surface equilibrium assumption in Gurtin-Murdoch elasticity, the presence of normal surface stresses is incorporated. The von Karman nonlinear strain is employed to derive the governing equation. The presence of gas rarefaction at various Knudsen numbers is considered as well as the edge effect on the distribution of Coulomb and dispersion forces. The mode shapes of the nanobeam are determined as a function of the surface and microstructure parameter and the nonlinear governing equation is solved using Galerkin method. The dynamic response, phase plane and stability threshold of the nanocantilever are discussed.

  4. Computational fluid dynamics model of WTP clearwell: Evaluation of critical parameters influencing model performance

    Energy Technology Data Exchange (ETDEWEB)

    Ducoste, J.; Brauer, R.

    1999-07-01

    Analysis of a computational fluid dynamics (CFD) model for a water treatment plant clearwell was done. Model parameters were analyzed to determine their influence on the effluent-residence time distribution (RTD) function. The study revealed that several model parameters could have significant impact on the shape of the RTD function and consequently raise the level of uncertainty on accurate predictions of clearwell hydraulics. The study also revealed that although the modeler could select a distribution of values for some of the model parameters, most of these values can be ruled out by requiring the difference between the calculated and theoretical hydraulic retention time to within 5% of the theoretical value.

  5. A computational fluid dynamics model for wind simulation:model implementation and experimental validation

    Institute of Scientific and Technical Information of China (English)

    Zhuo-dong ZHANG; Ralf WIELAND; Matthias REICHE; Roger FUNK; Carsten HOFFMANN; Yong LI; Michael SOMMER

    2012-01-01

    To provide physically based wind modelling for wind erosion research at regional scale,a 3D computational fluid dynamics (CFD) wind model was developed.The model was programmed in C language based on the Navier-Stokes equations,and it is freely available as open source.Integrated with the spatial analysis and modelling tool (SAMT),the wind model has convenient input preparation and powerful output visualization.To validate the wind model,a series of experiments was conducted in a wind tunnel.A blocking inflow experiment was designed to test the performance of the model on simulation of basic fluid processes.A round obstacle experiment was designed to check if the model could simulate the influences of the obstacle on wind field.Results show that measured and simulated wind fields have high correlations,and the wind model can simulate both the basic processes of the wind and the influences of the obstacle on the wind field.These results show the high reliability of the wind model.A digital elevation model (DEM) of an area (3800 m long and 1700 m wide) in the Xilingele grassland in Inner Mongolia (autonomous region,China) was applied to the model,and a 3D wind field has been successfully generated.The clear implementation of the model and the adequate validation by wind tunnel experiments laid a solid foundation for the prediction and assessment of wind erosion at regional scale.

  6. A physical five-equation model for compressible two-fluid flow, and its numerical treatment

    NARCIS (Netherlands)

    Kreeft, J.J.; Koren, B.

    2009-01-01

    A novel five-equation model for inviscid, non-heat-conducting, compressible two-fluid flow is derived, together with an appropriate numerical method. The model uses flow equations based on conservation laws and exchange laws only. The two fluids exchange momentum and energy, for which source terms a

  7. Gene expression profiles of human dendritic cells interacting with Aspergillus fumigatus in a bilayer model of the alveolar epithelium/endothelium interface.

    Directory of Open Access Journals (Sweden)

    Charles Oliver Morton

    Full Text Available The initial stages of the interaction between the host and Aspergillus fumigatus at the alveolar surface of the human lung are critical in the establishment of aspergillosis. Using an in vitro bilayer model of the alveolus, including both the epithelium (human lung adenocarcinoma epithelial cell line, A549 and endothelium (human pulmonary artery epithelial cells, HPAEC on transwell membranes, it was possible to closely replicate the in vivo conditions. Two distinct sub-groups of dendritic cells (DC, monocyte-derived DC (moDC and myeloid DC (mDC, were included in the model to examine immune responses to fungal infection at the alveolar surface. RNA in high quantity and quality was extracted from the cell layers on the transwell membrane to allow gene expression analysis using tailored custom-made microarrays, containing probes for 117 immune-relevant genes. This microarray data indicated minimal induction of immune gene expression in A549 alveolar epithelial cells in response to germ tubes of A. fumigatus. In contrast, the addition of DC to the system greatly increased the number of differentially expressed immune genes. moDC exhibited increased expression of genes including CLEC7A, CD209 and CCL18 in the absence of A. fumigatus compared to mDC. In the presence of A. fumigatus, both DC subgroups exhibited up-regulation of genes identified in previous studies as being associated with the exposure of DC to A. fumigatus and exhibiting chemotactic properties for neutrophils, including CXCL2, CXCL5, CCL20, and IL1B. This model closely approximated the human alveolus allowing for an analysis of the host pathogen interface that complements existing animal models of IA.

  8. Gene expression profiles of human dendritic cells interacting with Aspergillus fumigatus in a bilayer model of the alveolar epithelium/endothelium interface.

    Science.gov (United States)

    Morton, Charles Oliver; Fliesser, Mirjam; Dittrich, Marcus; Mueller, Tobias; Bauer, Ruth; Kneitz, Susanne; Hope, William; Rogers, Thomas Richard; Einsele, Hermann; Loeffler, Juergen

    2014-01-01

    The initial stages of the interaction between the host and Aspergillus fumigatus at the alveolar surface of the human lung are critical in the establishment of aspergillosis. Using an in vitro bilayer model of the alveolus, including both the epithelium (human lung adenocarcinoma epithelial cell line, A549) and endothelium (human pulmonary artery epithelial cells, HPAEC) on transwell membranes, it was possible to closely replicate the in vivo conditions. Two distinct sub-groups of dendritic cells (DC), monocyte-derived DC (moDC) and myeloid DC (mDC), were included in the model to examine immune responses to fungal infection at the alveolar surface. RNA in high quantity and quality was extracted from the cell layers on the transwell membrane to allow gene expression analysis using tailored custom-made microarrays, containing probes for 117 immune-relevant genes. This microarray data indicated minimal induction of immune gene expression in A549 alveolar epithelial cells in response to germ tubes of A. fumigatus. In contrast, the addition of DC to the system greatly increased the number of differentially expressed immune genes. moDC exhibited increased expression of genes including CLEC7A, CD209 and CCL18 in the absence of A. fumigatus compared to mDC. In the presence of A. fumigatus, both DC subgroups exhibited up-regulation of genes identified in previous studies as being associated with the exposure of DC to A. fumigatus and exhibiting chemotactic properties for neutrophils, including CXCL2, CXCL5, CCL20, and IL1B. This model closely approximated the human alveolus allowing for an analysis of the host pathogen interface that complements existing animal models of IA.

  9. Modelling of fluid-structure interaction with multiphase viscous flows using an immersed-body method

    Science.gov (United States)

    Yang, P.; Xiang, J.; Fang, F.; Pavlidis, D.; Latham, J.-P.; Pain, C. C.

    2016-09-01

    An immersed-body method is developed here to model fluid-structure interaction for multiphase viscous flows. It does this by coupling a finite element multiphase fluid model and a combined finite-discrete element solid model. A coupling term containing the fluid stresses is introduced within a thin shell mesh surrounding the solid surface. The thin shell mesh acts as a numerical delta function in order to help apply the solid-fluid boundary conditions. When used with an advanced interface capturing method, the immersed-body method has the capability to solve problems with fluid-solid interfaces in the presence of multiphase fluid-fluid interfaces. Importantly, the solid-fluid coupling terms are treated implicitly to enable larger time steps to be used. This two-way coupling method has been validated by three numerical test cases: a free falling cylinder in a fluid at rest, elastic membrane and a collapsing column of water moving an initially stationary solid square. A fourth simulation example is of a water-air interface with a floating solid square being moved around by complex hydrodynamic flows including wave breaking. The results show that the immersed-body method is an effective approach for two-way solid-fluid coupling in multiphase viscous flows.

  10. Molecular Dynamics of Lipid Bilayers

    Science.gov (United States)

    1989-08-09

    The aim of this work is to study, by molecular dynamics simulations, the properties of lipid bilayers. We have applied the vectorizable, order-N...fast angle-dependent force/potential algorithms to treat angle bending and torsion. Keywords: Molecular dynamics , Lipid bilayers.

  11. Advanced fluid modelling and PIC/MCC simulations of low-pressure ccrf discharges

    CERN Document Server

    Becker, Markus M; Sun, Anbang; Bonitz, Michael; Loffhagen, Detlef

    2016-01-01

    Comparative studies of capacitively coupled radio-frequency discharges in helium and argon at pressures between 10 and 80 Pa are presented applying two different fluid modelling approaches as well as two independently developed particle-in-cell/Monte Carlo collision (PIC/MCC) codes. The focus is on the analysis of the range of applicability of a recently proposed fluid model including an improved drift-diffusion approximation for the electron component as well as its comparison with fluid modelling results using the classical drift-diffusion approximation and benchmark results obtained by PIC/MCC simulations. Main features of this time- and space-dependent fluid model are given. It is found that the novel approach shows generally quite good agreement with the macroscopic properties derived by the kinetic simulations and is largely able to characterize qualitatively and quantitatively the discharge behaviour even at conditions when the classical fluid modelling approach fails. Furthermore, the excellent agreem...

  12. Effects of Dimethyl Sulfoxide on Surface Water near Phospholipid Bilayers.

    Science.gov (United States)

    Lee, Yuno; Pincus, Philip A; Hyeon, Changbong

    2016-12-06

    Despite much effort to probe the properties of dimethyl sulfoxide (DMSO) solution, the effects of DMSO on water, especially near plasma membrane surfaces, still remain elusive. By performing molecular dynamics simulations at varying DMSO concentrations (XDMSO), we study how DMSO affects structural and dynamical properties of water in the vicinity of phospholipid bilayers. As proposed by a number of experiments, our simulations confirm that DMSO induces dehydration from bilayer surfaces and disrupts the H-bond structure of water. However, DMSO-enhanced water diffusivity at solvent-bilayer interfaces, an intriguing discovery reported by a spin-label measurement, is not confirmed in our simulations. To resolve this discrepancy, we examine the location of the spin label (Tempo) relative to the solvent-bilayer interface. In accord with the evidence in the literature, our simulations, which explicitly model Tempo-phosphatidylcholine, find that the Tempo moiety is equilibrated at ∼8-10 Å below the bilayer surface. Furthermore, the DMSO-enhanced surface-water diffusion is confirmed only when water diffusion is analyzed around the Tempo moiety that is immersed below the bilayer surface, which implies that the experimentally detected signal of water using Tempo stems from the interior of bilayers, not from the interface. Our analysis finds that the increase of water diffusion below the bilayer surface is coupled to the increase of area per lipid with an increasing XDMSO(≲10mol%). Underscoring the hydrophobic nature of the Tempo moiety, our study calls for careful re-evaluation of the use of Tempo in measurements on lipid bilayer surfaces. Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

  13. A Lattice Boltzmann Model of Binary Fluid Mixture

    CERN Document Server

    Orlandini, E; Yeomans, J M; Orlandini, Enzo; Swift, Michael R.

    1995-01-01

    We introduce a lattice Boltzmann for simulating an immiscible binary fluid mixture. Our collision rules are derived from a macroscopic thermodynamic description of the fluid in a way motivated by the Cahn-Hilliard approach to non-equilibrium dynamics. This ensures that a thermodynamically consistent state is reached in equilibrium. The non-equilibrium dynamics is investigated numerically and found to agree with simple analytic predictions in both the one-phase and the two-phase region of the phase diagram.

  14. Convective Heat Transfer Analysis on Prandtl Fluid Model with Peristalsis

    Directory of Open Access Journals (Sweden)

    A. Alsaedi

    2013-01-01

    Full Text Available The effects of magnetohydrodynamic (MHD on peristaltic transport of Prandtl fluid in a symmetric channel have been studied under the assumptions of long wave length and low-Reynolds number. Channel walls are considered compliant in nature. Series solutions of axial velocity, stream function and temperature are given by using regular perturbation technique for small values of Prandtl fluid parameter. The effects of physical parameters on the velocity, streamlines and temperature are examined by plotting graphs.

  15. Hydraulic fracturing fluid migration in the subsurface: A review and expanded modeling results

    Science.gov (United States)

    Birdsell, Daniel T.; Rajaram, Harihar; Dempsey, David; Viswanathan, Hari S.

    2015-09-01

    Understanding the transport of hydraulic fracturing (HF) fluid that is injected into the deep subsurface for shale gas extraction is important to ensure that shallow drinking water aquifers are not contaminated. Topographically driven flow, overpressured shale reservoirs, permeable pathways such as faults or leaky wellbores, the increased formation pressure due to HF fluid injection, and the density contrast of the HF fluid to the surrounding brine can encourage upward HF fluid migration. In contrast, the very low shale permeability and capillary imbibition of water into partially saturated shale may sequester much of the HF fluid, and well production will remove HF fluid from the subsurface. We review the literature on important aspects of HF fluid migration. Single-phase flow and transport simulations are performed to quantify how much HF fluid is removed via the wellbore with flowback and produced water, how much reaches overlying aquifers, and how much is permanently sequestered by capillary imbibition, which is treated as a sink term based on a semianalytical, one-dimensional solution for two-phase flow. These simulations include all of the important aspects of HF fluid migration identified in the literature review and are performed in five stages to faithfully represent the typical operation of a hydraulically fractured well. No fracturing fluid reaches the aquifer without a permeable pathway. In the presence of a permeable pathway, 10 times more fracturing fluid reaches the aquifer if well production and capillary imbibition are not included in the model.

  16. Bianchi Type-I cosmological mesonic stiff fluid models in Lyra's geometry

    Indian Academy of Sciences (India)

    S D Katore; S V Thakare; K S Adhao

    2008-07-01

    Bianchi Type-I cosmological models in Lyra's geometry are obtained when the source of gravitational field is a perfect fluid coupled with massless mesonic scalar field. Some physical and kinematical properties of the models are also discussed.

  17. High order fluid model for streamer discharges. II. Numerical solution and investigation of planar fronts

    CERN Document Server

    Markosyan, A H; Ebert, U

    2013-01-01

    The high order fluid model developed in the preceding paper is employed here to study the propagation of negative planar streamer fronts in pure nitrogen. The model consists of the balance equations for electron density, average electron velocity, average electron energy and average electron energy flux. These balance equations have been obtained as velocity moments of Boltzmann's equation and are here coupled to the Poisson equation for the space charge electric field. Here the results of simulations with the high order model, with a PIC/MC (Particle in cell/Monte Carlo) model and with the first order fluid model based on the hydrodynamic drift-diffusion approximation are presented and compared. The comparison with the MC model clearly validates our high order fluid model, thus supporting its correct theoretical derivation and numerical implementation. The results of the first order fluid model with local field approximation, as usually used for streamer discharges, show considerable deviations. Furthermore,...

  18. Mathematical Models of Fluid Dynamics Modeling, Theory, Basic Numerical Facts An Introduction

    CERN Document Server

    Ansorge, Rainer

    2009-01-01

    Without sacrificing scientific strictness, this introduction to the field guides readers through mathematical modeling, the theoretical treatment of the underlying physical laws and the construction and effective use of numerical procedures to describe the behavior of the dynamics of physical flow. The book is carefully divided into three main parts:. - The design of mathematical models of physical fluid flow;. - A theoretical treatment of the equations representing the model, as Navier-Stokes, Euler, and boundary layer equations, models of turbulence, in order to gain qualitative as well as q

  19. Numerical Modeling and Investigation of Fluid-Driven Fracture Propagation in Reservoirs Based on a Modified Fluid-Mechanically Coupled Model in Two-Dimensional Particle Flow Code

    Directory of Open Access Journals (Sweden)

    Jian Zhou

    2016-09-01

    Full Text Available Hydraulic fracturing is a useful tool for enhancing rock mass permeability for shale gas development, enhanced geothermal systems, and geological carbon sequestration by the high-pressure injection of a fracturing fluid into tight reservoir rocks. Although significant advances have been made in hydraulic fracturing theory, experiments, and numerical modeling, when it comes to the complexity of geological conditions knowledge is still limited. Mechanisms of fluid injection-induced fracture initiation and propagation should be better understood to take full advantage of hydraulic fracturing. This paper presents the development and application of discrete particle modeling based on two-dimensional particle flow code (PFC2D. Firstly, it is shown that the modeled value of the breakdown pressure for the hydraulic fracturing process is approximately equal to analytically calculated values under varied in situ stress conditions. Furthermore, a series of simulations for hydraulic fracturing in competent rock was performed to examine the influence of the in situ stress ratio, fluid injection rate, and fluid viscosity on the borehole pressure history, the geometry of hydraulic fractures, and the pore-pressure field, respectively. It was found that the hydraulic fractures in an isotropic medium always propagate parallel to the orientation of the maximum principal stress. When a high fluid injection rate is used, higher breakdown pressure is needed for fracture propagation and complex geometries of fractures can develop. When a low viscosity fluid is used, fluid can more easily penetrate from the borehole into the surrounding rock, which causes a reduction of the effective stress and leads to a lower breakdown pressure. Moreover, the geometry of the fractures is not particularly sensitive to the fluid viscosity in the approximate isotropic model.

  20. Development of Efficient Real-Fluid Model in Simulating Liquid Rocket Injector Flows

    Science.gov (United States)

    Cheng, Gary; Farmer, Richard

    2003-01-01

    The characteristics of propellant mixing near the injector have a profound effect on the liquid rocket engine performance. However, the flow features near the injector of liquid rocket engines are extremely complicated, for example supercritical-pressure spray, turbulent mixing, and chemical reactions are present. Previously, a homogeneous spray approach with a real-fluid property model was developed to account for the compressibility and evaporation effects such that thermodynamics properties of a mixture at a wide range of pressures and temperatures can be properly calculated, including liquid-phase, gas- phase, two-phase, and dense fluid regions. The developed homogeneous spray model demonstrated a good success in simulating uni- element shear coaxial injector spray combustion flows. However, the real-fluid model suffered a computational deficiency when applied to a pressure-based computational fluid dynamics (CFD) code. The deficiency is caused by the pressure and enthalpy being the independent variables in the solution procedure of a pressure-based code, whereas the real-fluid model utilizes density and temperature as independent variables. The objective of the present research work is to improve the computational efficiency of the real-fluid property model in computing thermal properties. The proposed approach is called an efficient real-fluid model, and the improvement of computational efficiency is achieved by using a combination of a liquid species and a gaseous species to represent a real-fluid species.

  1. A SECOND-ORDER MOMENT TURBULENCE MODEL FOR POWER LAW FLUID WITH PARTICLES

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    The model of power law fluid for dense two-phase turbulent flow was developed, which combines the unified second-order moment model for two-phase turbulence with the particle kinetic theory for the inter-particle collision. This model was used to simulate the turbulent flow of power law fluid single-phase in pipe. It is shown that the model has better prediction result than the model. The model was then used to simulate the dense two-phase turbulent up flow of power law fluid with particles. With the increase of the flow exponent, the velocities of power law fluid and particles increase near the pipe centre. Comparison between the two-phase flow of power law fluid-particle and of liquid-particle indicates that the axial fluctuation velocity of fluid phase and particle phase in liquid-particle two-phase flow is smaller than that in the power law fluid two-phase flow, but the two-phase velocities of power law fluid-particle and liquid-particle are close to each other.

  2. Many-body dissipative particle dynamics modeling of fluid flow in fine-grained nanoporous shales

    Science.gov (United States)

    Xia, Yidong; Goral, Jan; Huang, Hai; Miskovic, Ilija; Meakin, Paul; Deo, Milind

    2017-05-01

    A many-body dissipative particle dynamics model, namely, MDPD, is applied for simulation of pore-scale, multi-component, multi-phase fluid flows in fine-grained, nanoporous shales. Since this model is able to simultaneously capture the discrete features of fluid molecules in nanometer size pores and continuum fluid dynamics in larger pores, and is relatively easy to parameterize, it has been recognized as being particularly suitable for simulating complex fluid flow in multi-length-scale nanopore networks of shales. A remarkable feature of this work is the integration of a high-resolution FIB-SEM (focused ion beam scanning electron microscopy) digital imaging technique to the MDPD model for providing 3D voxel data that contain the invaluable geometrical and compositional information of shale samples. This is the first time that FIB-SEM is seamlessly linked to a Lagrangian model like MDPD for fluid flow simulation, which offers a robust approach to bridging gaps between the molecular- and continuum-scales, since the relevant spatial and temporal scales are too big for molecular dynamics, and too small for computational fluid dynamics with known constitutive models. Simulations ranging from a number of benchmark problems to a forced two-fluid flow in a Woodford shale sample are presented. Results indicate that this model can be used to deliver reasonable simulations for multi-component, multi-phase fluid flows in arbitrarily complex pore networks in shales.

  3. High order fluid model for streamer discharges: I. Derivation of model and transport data

    CERN Document Server

    Dujko, S; White, R D; Ebert, U

    2013-01-01

    Streamer discharges pose basic problems in plasma physics, as they are very transient, far from equilibrium and have high ionization density gradients; they appear in diverse areas of science and technology. The present paper focuses on the derivation of a high order fluid model for streamers. Using momentum transfer theory, the fluid equations are obtained as velocity moments of the Boltzmann equation; they are closed in the local mean energy approximation and coupled to the Poisson equation for the space charge generated electric field. The high order tensor in the energy flux equation is approximated by the product of two lower order moments to close the system. The average collision frequencies for momentum and energy transfer in elastic and inelastic collisions for electrons in molecular nitrogen are calculated from a multi term Boltzmann equation solution. We then discuss, in particular, (1) the correct implementation of transport data in streamer models; (2) the accuracy of the two term approximation f...

  4. Wave Propagation in Fluids Models and Numerical Techniques

    CERN Document Server

    Guinot, Vincent

    2007-01-01

    This book presents the physical principles of wave propagation in fluid mechanics and hydraulics. The mathematical techniques that allow the behavior of the waves to be analyzed are presented, along with existing numerical methods for the simulation of wave propagation. Particular attention is paid to discontinuous flows, such as steep fronts and shock waves, and their mathematical treatment. A number of practical examples are taken from various areas fluid mechanics and hydraulics, such as contaminant transport, the motion of immiscible hydrocarbons in aquifers, river flow, pipe transients an

  5. An independent pair-link model of simple fluids

    CERN Document Server

    Bonneville, Richard

    2016-01-01

    A new approach to thermodynamics of simple fluids is presented. The partition function is first expressed in the reciprocal space, it is argued that the links (p,q) between 2 molecules can reasonably in the thermodynamical limit be considered as a set nearly independent objects characterized by the dynamical variables . It is then possible to derive an expression of the pair correlation function. The results, which are independent of the exact shape of the intermolecular potential, are applied to the simple case of hard sphere fluids.

  6. Static contact angle in lattice Boltzmann models of immiscible fluids.

    Science.gov (United States)

    Latva-Kokko, M; Rothman, Daniel H

    2005-10-01

    We study numerically the capillary rise between two horizontal plates and in a rectangular tube, using a lattice Boltzmann (LB) method. We derive an equation for the static fluid-solid contact angle as a function of the wetting tendency of the walls and test its validity. We show that the generalized Laplace law with two independent radii of curvature is followed in capillary rise in rectangular tubes. Our method removes the history dependence of the fluid-solid contact angle that had been present in earlier LB schemes.

  7. Good modelling practice in applying computational fluid dynamics for WWTP modelling.

    Science.gov (United States)

    Wicklein, Edward; Batstone, Damien J; Ducoste, Joel; Laurent, Julien; Griborio, Alonso; Wicks, Jim; Saunders, Stephen; Samstag, Randal; Potier, Olivier; Nopens, Ingmar

    2016-01-01

    Computational fluid dynamics (CFD) modelling in the wastewater treatment (WWT) field is continuing to grow and be used to solve increasingly complex problems. However, the future of CFD models and their value to the wastewater field are a function of their proper application and knowledge of their limits. As has been established for other types of wastewater modelling (i.e. biokinetic models), it is timely to define a good modelling practice (GMP) for wastewater CFD applications. An International Water Association (IWA) working group has been formed to investigate a variety of issues and challenges related to CFD modelling in water and WWT. This paper summarizes the recommendations for GMP of the IWA working group on CFD. The paper provides an overview of GMP and, though it is written for the wastewater application, is based on general CFD procedures. A forthcoming companion paper to provide specific details on modelling of individual wastewater components forms the next step of the working group.

  8. Evolution of fluid-fluid interface in porous media as the model of gas-oil fields

    Directory of Open Access Journals (Sweden)

    Cerasela-Iliana Calugaru

    2003-06-01

    Full Text Available This article proposes a generalized model for describing deformations of the mobile interface separating two immiscible weakly compressible fluids in a weakly deformable porous medium. It describes a gravity non-equilibrium processes, including evolution of the gravitational instability and can be reduced in two cases. This paper deals with the first case in which elastic perturbations are propagating much slower than gravity perturbations. The obtained model has analytical solutions and is applied to simulate the behavior of oil-gas or water-oil interface in oil-gas reservoirs.

  9. Deriving a blood-mimicking fluid for particle image velocimetry in Sylgard-184 vascular models.

    Science.gov (United States)

    Yousif, Majid Y; Holdsworth, David W; Poepping, Tamie L

    2009-01-01

    A new blood-mimicking fluid (BMF) has been developed for particle image velocimetry (PIV), which enables flow studies in vascular models (phantoms). A major difficulty in PIV that affects measurement accuracy is the refraction and distortion of light passing through the interface between the model and the fluid, due to the difference in refractive index (n) between the two materials. The problem can be eliminated by using a fluid with a refractive index matching that of the model. Such fluids are not commonly available, especially for vascular research where the fluid should also have a viscosity similar to human blood. In this work, a blood-mimicking fluid, composed of water (47.38% by weight), glycerol (36.94% by weight) and sodium iodide salt (15.68% by weight), was developed for compatibility with our silicone (Sylgard 184; n = 1.414) phantoms. The fluid exhibits a dynamic viscosity of 4.31+/-0.03 cP which lies within the range of human blood viscosity (4.4+/-0.6 cP). Both refractive index and viscosity were attained at 22.2+/-0.2 degrees C, which is a feasible room temperature, thus eliminating the need for a temperature-control system. The fluid will be used to study hemodynamics in vascular flow models fabricated from Sylgard 184.

  10. Compound waves in a higher order nonlinear model of thermoviscous fluids

    DEFF Research Database (Denmark)

    Rønne Rasmussen, Anders; Sørensen, Mads Peter; Gaididei, Yuri B.

    2016-01-01

    A generalized traveling wave ansatz is used to investigate compound shock waves in a higher order nonlinear model of a thermoviscous fluid. The fluid velocity potential is written as a traveling wave plus a linear function of space and time. The latter offers the possibility of predicting...

  11. Hybrid finite-volume-ROM approach to non-linear aerospace fluid-structure interaction modelling

    CSIR Research Space (South Africa)

    Mowat, AGB

    2011-06-01

    Full Text Available frame, describe the fluid domain while the structure is represented by a quadratic modal reduced order model (ROM). A Runge-Kutta dual-timestepping method is employed for the fluid solver, and three upwind schemes are considered viz. AUSM+ -up, HLLC...

  12. Bianchi type VI1 cosmological model with wet dark fluid in scale invariant theory of gravitation

    CERN Document Server

    Mishra, B

    2014-01-01

    In this paper, we have investigated Bianchi type VIh, II and III cosmological model with wet dark fluid in scale invariant theory of gravity, where the matter field is in the form of perfect fluid and with a time dependent gauge function (Dirac gauge). A non-singular model for the universe filled with disorder radiation is constructed and some physical behaviors of the model are studied for the feasible VIh (h = 1) space-time.

  13. A two-fluid model for relativistic heat conduction

    Energy Technology Data Exchange (ETDEWEB)

    López-Monsalvo, César S. [Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México (Mexico)

    2014-01-14

    Three years ago it was presented in these proceedings the relativistic dynamics of a multi-fluid system together with various applications to a set of topical problems [1]. In this talk, I will start from such dynamics and present a covariant formulation of relativistic thermodynamics which provides us with a causal constitutive equation for the propagation of heat in a relativistic setting.

  14. Characterization and Low-Dimensional Modeling of Urban Fluid Flow

    Science.gov (United States)

    2014-10-06

    dimensional description of this urban flow. On the computational side, a new spectral -element code was developed that was demonstrated to produce accurate...contaminant transport. 15. SUBJECT TERMS Urban fluid flow, Spectral element method, Particle Image Velocitmetry 16. SECURITY CLASSIFICATION OF: 17...number and part number, if applicable. On classified documents, enter the title classification in parentheses. 5a. CONTRACT NUMBER. Enter all

  15. Numerical Modeling of Fluid Flow in the Tape Casting Process

    DEFF Research Database (Denmark)

    Jabbari, Masoud; Hattel, Jesper Henri

    2011-01-01

    The flow behavior of the fluid in the tape casting process is analyzed. A simple geometry is assumed for running the numerical calculations in ANSYS Fluent and the main parameters are expressed in non-dimensional form. The effect of different values for substrate velocity and pressure force...

  16. Microchannel Emulsification: From Computational Fluid Dynamics to Predictive Analytical Model

    NARCIS (Netherlands)

    Dijke, van K.C.; Schroën, C.G.P.H.; Boom, R.M.

    2008-01-01

    Emulsion droplet formation was investigated in terrace-based microchannel systems that generate droplets through spontaneous Laplace pressure driven snap-off. The droplet formation mechanism was investigated through high-speed imaging and computational fluid dynamics (CFD) simulation, and we found g

  17. A Mathematical Model for the Prediction of Fluid Responsiveness

    NARCIS (Netherlands)

    Lansdorp, B.; Putten, van M.J.A.M.; Keijzer, de A.; Pickkers, P.; Oostrom, van J.

    2013-01-01

    Fluid therapy is commonly used to improve cardiac output in hemodynamically instable patients in the intensive care unit. However, to predict whether patients will benefit from this intervention (i. e. are volume responsive), is difficult. Dynamic indices, that rely on heart-lung interactions, have

  18. Regional Fluid Flow and Basin Modeling in Northern Alaska

    Science.gov (United States)

    Kelley, Karen D.

    2007-01-01

    INTRODUCTION The foothills of the Brooks Range contain an enormous accumulation of zinc (Zn) in the form of zinc sulfide and barium (Ba) in the form of barite in Carboniferous shale, chert, and mudstone. Most of the resources and reserves of Zn occur in the Red Dog deposit and others in the Red Dog district; these resources and reserves surpass those of most deposits worldwide in terms of size and grade. In addition to zinc and lead sulfides (which contain silver, Ag) and barite, correlative strata host phosphate deposits. Furthermore, prolific hydrocarbon source rocks of Carboniferous and Triassic to Early Jurassic age generated considerable amounts of petroleum that may have contributed to the world-class petroleum resources of the North Slope. Deposits of Zn-Pb-Ag or barite as large as those in the Brooks Range are very rare on a global basis and, accordingly, multiple coincident favorable factors must be invoked to explain their origins. To improve our understanding of these factors and to contribute to more effective assessments of resources in sedimentary basins of northern Alaska and throughout the world, the Mineral Resources Program and the Energy Resources Program of the U.S. Geological Survey (USGS) initiated a project that was aimed at understanding the petroleum maturation and mineralization history of parts of the Brooks Range that were previously poorly characterized. The project, titled ?Regional Fluid Flow and Basin Modeling in Northern Alaska,? was undertaken in collaboration with industry, academia, and other government agencies. This Circular contains papers that describe the results of the recently completed project. The studies that are highlighted in these papers have led to a better understanding of the following: *The complex sedimentary facies relationships and depositional settings and the geochemistry of the sedimentary rocks that host the deposits (sections 2 and 3). *The factors responsible for formation of the barite and zinc deposits

  19. Fluid prediction using rock modelling and reconnaissance. AVO analysis - A case study from the North Sea

    Energy Technology Data Exchange (ETDEWEB)

    Osdal, Bard; Granli, John Reidar

    1998-12-31

    Seismic lithology and fluid phase prediction (LFP) is becoming an important part of seismic interpretation, and can contribute significantly to risk reduction prior to drilling. In this presentation there is focused on quantitative interpretation of the amplitudes in a 2-D dataset, with respect to presence of hydrocarbons. Different aspect of the working producer, like data quality (well data and seismic data), rock modelling and seismic modelling will be illustrated. In the present study only one well has been used for calibration and to investigate the seismic response for different fluid and lithology scenarios. The rock modelling included evaluation of seismic parameter effect for different fluid and porosities. 1 ref., 4 figs.

  20. Prandtl number effects in MRT lattice Boltzmann models for shocked and unshocked compressible fluids

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    This paper constructs a new multiple relaxation time lattice Boltzmann model which is not only for the shocked compressible fluids,but also for the unshocked compressible fluids.To make the model work for unshocked compressible fluids,a key step is to modify the collision operators of energy flux so that the viscous coefficient in momentum equation is consistent with that in energy equation even in the unshocked system.The unnecessity of the modification for systems under strong shock is analyzed.The model ...

  1. Lipid bilayers on nano-templates

    Science.gov (United States)

    Noy, Aleksandr; Artyukhin, Alexander B.; Bakajin, Olgica; Stoeve, Pieter

    2009-08-04

    A lipid bilayer on a nano-template comprising a nanotube or nanowire and a lipid bilayer around the nanotube or nanowire. One embodiment provides a method of fabricating a lipid bilayer on a nano-template comprising the steps of providing a nanotube or nanowire and forming a lipid bilayer around the polymer cushion. One embodiment provides a protein pore in the lipid bilayer. In one embodiment the protein pore is sensitive to specific agents

  2. Osteochondral repair in the rabbit model utilizing bilayered, degradable oligo(poly(ethylene glycol) fumarate) hydrogel scaffolds

    NARCIS (Netherlands)

    Holland, T.A.; Bodde, E.W.H.; Baggett, L.S.; Tabata, Y.; Mikos, A.G.; Jansen, J.A.

    2005-01-01

    In this study, hydrogel scaffolds, based on the polymer oligo(poly(ethylene glycol) fumarate) (OPF), were implanted into osteochondral defects in the rabbit model. Scaffolds consisted of two layers-a bottom, bone forming layer and a top, cartilage forming layer. Three scaffold formulations were impl

  3. Electric Octupole Order in Bilayer Rashba System

    Science.gov (United States)

    Hitomi, Takanori; Yanase, Youichi

    2016-12-01

    The odd-parity multipole is an emergent degree of freedom, leading to spontaneous inversion symmetry breaking. The odd-parity multipole order may occur by forming staggered even-parity multipoles in a unit cell. We focus on a locally noncentrosymmetric bilayer Rashba system, and study an odd-parity electric octupole order caused by the antiferro stacking of local electric quadrupoles. Analyzing the forward scattering model, we show that the electric octupole order is stabilized by a layer-dependent Rashba spin-orbit coupling. The roles of the spin-orbit coupling are clarified on the basis of the analytic formula of multipole susceptibility. The spin texture allowed in the D2d point group symmetry and its magnetic response are revealed. Furthermore, we show that the parity-breaking quantum critical point appears in the magnetic field. The possible realization of the electric octupole order in bilayer high-Tc cuprate superconductors is discussed.

  4. A Modelling Approach to Multibody Dynamics of Fluid Power Machinery with Hydrodynamic Lubrication

    DEFF Research Database (Denmark)

    Johansen, Per; Rømer, Daniel; Andersen, Torben Ole

    2013-01-01

    The efficiency potential of the digital displacement technology and the increasing interest in hydraulic transmissions in wind and wave energy applications has created an incentive for development of high efficiency fluid power machinery. Modelling and analysis of fluid power machinery loss...... to be coupled with multibody dynamics models. The focus of the current paper is an approach where the transient pressure field in hydrodynamic lubricated joint clearances are modelled by a set of control volumes and coupled with the fluid power machinery mechanics....... mechanisms is necessary in order to accommodate this demand. At present fully coupled thermo-elastic models for various tribological interfaces has been presented. However, in order to analyse the interaction between tribological interfaces in fluid power pumps and motors, these interface models needs...

  5. Cosmological models described by a mixture of van der Waals fluid and dark energy

    CERN Document Server

    Kremer, G M

    2003-01-01

    The Universe is modeled as a binary mixture whose constituents are described by a van der Waals fluid and by a dark energy density. The dark energy density is considered either as the quintessence or as the Chaplygin gas. The irreversible processes concerning the energy transfer between the van der Waals fluid and the gravitational field are taken into account. This model can simulate: (a) an inflationary period where the acceleration grows exponentially and the van der Waals fluid behaves like an inflaton; (b) an inflationary period where the acceleration is positive but it decreases and tends to zero whereas the energy density of the van der Waals fluid decays; (c) a decelerated period which corresponds to a matter dominated period with a non-negative pressure; and (d) a present accelerated period where the dark energy density outweighs the energy density of the van der Waals fluid.

  6. Modeling of geochemical interactions between acidic and neutral fluids in the Onikobe Geothermal Reservoir

    Energy Technology Data Exchange (ETDEWEB)

    Todaka, Norifumi; Akasaka, Chitoshi; Xu, Tianfu; Pruess, Karsten

    2003-01-10

    Two types of fluids are encountered in the Onikobe geothermal reservoir, one is neutral and the other is acidic (pH=3). It is hypothesized that acidic fluid might be upwelling along a fault zone and that an impermeable barrier might be present between the acidic and neutral fluid zones. We carried out reactive geothermal transport simulations using TOUGHREACT (Xu and Pruess, 1998 and 2001) to test such a conceptual model. One-dimensional models were used to study the geochemical behavior due to mixing of the two fluids. Mn-rich smectite precipitated near the mixing front and is likely to form an impermeable barrier between regions with acidic and neutral fluids.

  7. Dynamics and stability of lipid bilayers modulated by thermosensitive polypeptides, cholesterols, and PEGylated lipids.

    Science.gov (United States)

    Lee, Hwankyu; Kim, Hyun Ryoung; Park, Jae Chan

    2014-02-28

    Lipid bilayers, which consist of dipalmitoylglycerophosphocholines (DPPCs), PEGylated lipids, cholesterols, and elastin-like polypeptides (ELPs; [VPGVG]3) at different molar ratios, were simulated. Simulations were carried out for 2 μs using the coarse-grained (CG) model that had captured the experimentally observed phase behavior of PEGylated lipids and lateral diffusivity of DPPC bilayers. Starting with the initial position of ELPs on the bilayer surface, ELPs insert into the hydrophobic region of the bilayer because of their interaction with lipid tails, consistent with previous all-atom simulations. Lateral diffusion coefficients of DPPCs significantly increase in the bilayer composed of more ELPs and less cholesterols, showing their opposite effects on the bilayer dynamics. In particular, ELPs modulate the dynamics and phase for the disordered liquid bilayer, but not for the ordered gel bilayer, indicating that ELPs can destabilize only the disordered bilayer. In the ordered bilayer, ELP chains tend to have a spherical shape and slowly diffuse, while they are extended and diffuse faster in the disordered bilayer, indicating the effect of the bilayer phase on the conformation and diffusivity of ELPs. These findings explain the experimental observation that the ELP-conjugated liposomes are stable at 310 K (ordered phase) but become unstable and release the encapsulated drugs at 315 K (disordered phase), which suggests the effects of ELPs and cholesterols. Since the cholesterol-stabilized bilayer can be destabilized by the extended shaped ELPs only in the disordered phase (not in the ordered phase), the inclusion of cholesterols is required to safely shield drugs at 310 K as well as allow ELPs to disrupt lipids and destabilize the liposomes at 315 K.

  8. Prediction of fluid forces acting on a hand model in unsteady flow conditions.

    Science.gov (United States)

    Kudo, Shigetada; Yanai, Toshimasa; Wilson, Barry; Takagi, Hideki; Vennell, Ross

    2008-01-01

    The aim of this study was to develop a method to predict fluid forces acting on the human hand in unsteady flow swimming conditions. A mechanical system consisting of a pulley and chain mechanism and load cell was constructed to rotate a hand model in fluid flows. To measure the angular displacement of the hand model a potentiometer was attached to the axis of the rotation. The hand model was then fixed at various angles about the longitudinal axis of the hand model and rotated at different flow velocities in a swimming flume for 258 different trials to approximate a swimmer's stroke in unsteady flow conditions. Pressures were taken from 12 transducers embedded in the hand model at a sampling frequency of 200Hz. The resultant fluid force acting on the hand model was then determined on the basis of the kinetic and kinematic data taken from the mechanical system at the frequency of 200Hz. A stepwise regression analysis was applied to acquire higher order polynomial equations that predict the fluid force acting on the accelerating hand model from the 12 pressure values. The root mean square (RMS) difference between the resultant fluid force measured and that predicted from the single best-fit polynomial equation across all trials was 5N. The method developed in the present study accurately predicted the fluid forces acting on the hand model.

  9. FRACTURE OF AMORPHOUS BILAYER RIBBON

    NARCIS (Netherlands)

    Ocelik, Vaclav; DUHAJ, P; CSACH, K; MISKUF, J; BENGUS, VZ

    On the basis of measuring the mechanical properties and observing the fracture surface of an amorphous bilayer ribbon some partial conclusions on the mechanical quality of the bimetal boundary were drawn.

  10. Predicting proton titration in cationic micelle and bilayer environments

    Energy Technology Data Exchange (ETDEWEB)

    Morrow, Brian H.; Shen, Jana K. [Department of Pharmaceutical Sciences, University of Maryland, Baltimore, Maryland 21201 (United States); Eike, David M.; Murch, Bruce P.; Koenig, Peter H. [Computational Chemistry, Modeling and Simulation GCO, Procter and Gamble, Cincinnati, Ohio 45201 (United States)

    2014-08-28

    Knowledge of the protonation behavior of pH-sensitive molecules in micelles and bilayers has significant implications in consumer product development and biomedical applications. However, the calculation of pK{sub a}’s in such environments proves challenging using traditional structure-based calculations. Here we apply all-atom constant pH molecular dynamics with explicit ions and titratable water to calculate the pK{sub a} of a fatty acid molecule in a micelle of dodecyl trimethylammonium chloride and liquid as well as gel-phase bilayers of diethyl ester dimethylammonium chloride. Interestingly, the pK{sub a} of the fatty acid in the gel bilayer is 5.4, 0.4 units lower than that in the analogous liquid bilayer or micelle, despite the fact that the protonated carboxylic group is significantly more desolvated in the gel bilayer. This work illustrates the capability of all-atom constant pH molecular dynamics in capturing the delicate balance in the free energies of desolvation and Coulombic interactions. It also shows the importance of the explicit treatment of ions in sampling the protonation states. The ability to model dynamics of pH-responsive substrates in a bilayer environment is useful for improving fabric care products as well as our understanding of the side effects of anti-inflammatory drugs.

  11. Modelling general relativistic perfect fluids in field theoretic language

    CERN Document Server

    Mitskievich, N V

    1999-01-01

    Skew-symmetric massless fields, their potentials being $r$-forms, are close analogues of Maxwell's field (though the non-linear cases also should be considered). We observe that only two of them ($r=$2 and 3) automatically yield stress-energy tensors characteristic to normal perfect fluids. It is shown that they naturally describe both non-rotating ($r=2$) and rotating (then a combination of $r=2$ and $r=3$ fields is indispensable) general relativistic perfect fluids possessing every type of equations of state. Meanwile, a free $r=3$ field is completely equivalent to appearance of the cosmological term in Einstein's equations. Sound waves represent perturbations propagating on the background of the $r=2$ field. Some exotic properties of these two fields are outlined.

  12. Semiclassical approach to model quantum fluids using the statistical associating fluid theory for systems with potentials of variable range.

    Science.gov (United States)

    Trejos, Víctor M; Gil-Villegas, Alejandro

    2012-05-14

    Thermodynamic properties of quantum fluids are described using an extended version of the statistical associating fluid theory for potentials of variable range (SAFT-VR) that takes into account quantum corrections to the Helmholtz free energy A, based on the Wentzel-Kramers-Brillouin approximation. We present the theoretical background of this approach (SAFT-VRQ), considering two different cases depending on the continuous or discontinuous nature of the particles pair interaction. For the case of continuous potentials, we demonstrate that the standard Wigner-Kirkwood theory for quantum fluids can be derived from the de Broglie-Bohm formalism for quantum mechanics that can be incorporated within the Barker and Henderson perturbation theory for liquids in a straightforward way. When the particles interact via a discontinuous pair potential, the SAFT-VR method can be combined with the perturbation theory developed by Singh and Sinha [J. Chem. Phys. 67, 3645 (1977); and ibid. 68, 562 (1978)]. We present an analytical expression for the first-order quantum perturbation term for a square-well potential, and the theory is applied to model thermodynamic properties of hydrogen, deuterium, neon, and helium-4. Vapor-liquid equilibrium, liquid and vapor densities, isochoric and isobaric heat capacities, Joule-Thomson coefficients and inversion curves are predicted accurately with respect to experimental data. We find that quantum corrections are important for the global behavior of properties of these fluids and not only for the low-temperature regime. Predictions obtained for hydrogen compare very favorably with respect to cubic equations of state.

  13. Semiclassical approach to model quantum fluids using the statistical associating fluid theory for systems with potentials of variable range

    Science.gov (United States)

    Trejos, Víctor M.; Gil-Villegas, Alejandro

    2012-05-01

    Thermodynamic properties of quantum fluids are described using an extended version of the statistical associating fluid theory for potentials of variable range (SAFT-VR) that takes into account quantum corrections to the Helmholtz free energy A, based on the Wentzel-Kramers-Brillouin approximation. We present the theoretical background of this approach (SAFT-VRQ), considering two different cases depending on the continuous or discontinuous nature of the particles pair interaction. For the case of continuous potentials, we demonstrate that the standard Wigner-Kirkwood theory for quantum fluids can be derived from the de Broglie-Bohm formalism for quantum mechanics that can be incorporated within the Barker and Henderson perturbation theory for liquids in a straightforward way. When the particles interact via a discontinuous pair potential, the SAFT-VR method can be combined with the perturbation theory developed by Singh and Sinha [J. Chem. Phys. 67, 3645 (1977); Singh and Sinha J. Chem. Phys. 68, 562 (1978)]. We present an analytical expression for the first-order quantum perturbation term for a square-well potential, and the theory is applied to model thermodynamic properties of hydrogen, deuterium, neon, and helium-4. Vapor-liquid equilibrium, liquid and vapor densities, isochoric and isobaric heat capacities, Joule-Thomson coefficients and inversion curves are predicted accurately with respect to experimental data. We find that quantum corrections are important for the global behavior of properties of these fluids and not only for the low-temperature regime. Predictions obtained for hydrogen compare very favorably with respect to cubic equations of state.

  14. Wave propagation in fluids models and numerical techniques

    CERN Document Server

    Guinot, Vincent

    2012-01-01

    This second edition with four additional chapters presents the physical principles and solution techniques for transient propagation in fluid mechanics and hydraulics. The application domains vary including contaminant transport with or without sorption, the motion of immiscible hydrocarbons in aquifers, pipe transients, open channel and shallow water flow, and compressible gas dynamics. The mathematical formulation is covered from the angle of conservation laws, with an emphasis on multidimensional problems and discontinuous flows, such as steep fronts and shock waves. Finite

  15. Algorithm Development for the Two-Fluid Plasma Model

    Science.gov (United States)

    2009-02-17

    of m=0 sausage instabilities in an axisymmetric Z-pinch", Physics of Plasmas 13, 082310 (2006). • A. Hakim and U. Shumlak, "Two-fluid physics and...accurate as the solution variables. The high-order representation of the solution variables satisfies the accuracy requirement to preserve the...here. [2] It also illustrates the dispersive nature of the waves which makes capturing the effect difficult in MHD algorithms. The electromagnetic

  16. Algorithm Development for the Multi-Fluid Plasma Model

    Science.gov (United States)

    2011-05-30

    ities of a Hall-MHD wave increase without bound with wave number. The large wave speeds increases the stiffness of the equation system making accu- rate...illustrates the dispersive nature of the waves which makes capturing the effect difficult in MHD algorithms. The electromagnetic plasma shock serves to...Nonlinear full two-fluid study of m = 0 sausage instabilities in an axisymmetric Z pinch. Physics of Plasmas, 13(8):082310, 2006. [5] A. Hakim and U. Shumlak

  17. Modeling phantom energy wormholes from Shan-Chen fluids

    CERN Document Server

    Wang, Deng

    2015-01-01

    In recent years, cosmic observational data have reported that our present universe is undergoing an accelerated expansion, which has been termed as mysterious "dark energy" phenomena, that is, the origin of dark energy has not been determined yet. According to our previous work that a new equation of state \\cite{X.Shan and H.Chen1993} can be employed to explain the dark energy, and we are very interested in investigating the astrophysical scale properties of dark energy based on the new cosmological fluids given that the universe is filled with a dark energy fluid everywhere. Hence, in this paper, we study the exact solutions of spherically-symmetrical Einstein field equations describing wormholes supported by phantom energy from Shan-Chen (SC) fluids by considering an obvious relation between the transversal pressure and energy density which is different from our previous work \\cite{111}. We have still investigated the important case $\\psi\\approx1$ which corresponds to the " saturation effect ", and this reg...

  18. New mathematical model for fluid-glucose-albumin transport in peritoneal dialysis

    CERN Document Server

    Cherniha, Roman

    2011-01-01

    A mathematical model for fluid transport in peritoneal dialysis is constructed. The model is based on a three-component nonlinear system of two-dimensional partial differential equations for fluid, glucose and albumin transport with the relevant boundary and initial conditions. Non-constant steady-state solutions of the model are studied. The restrictions on the parameters arising in the model are established with the aim to obtain exact formulae for the non-constant steady-state solutions. As the result, the exact formulae for the fluid fluxes from blood to tissue and across the tissue were constructed together with two linear autonomous ODEs for glucose and albumin concentrations. The analytical results were checked for their applicability for the description of fluid-glucose-albumin transport during peritoneal dialysis.

  19. ON THE FILTRATION OF NON-NEWTONIAN FLUID IN POROUS MEDIA WITH A MULTIPLE PARAMETER MODEL

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    A multiple parameter model to describe the Non-Newtonianproperties of fluid filtration in porous media is presented with regard to the pressure gradient expression in terms of the velocity of filtration, where the multiple parameters should be determined by measurements. Based on such a model, an analysis was furnished to deduce the formula for the rate of production of a oil well, and the governing equations for single phase Non-Newtonian fluid fritration. In order to examine the effects of model parameters, the governing equations were numerically solved with the method of cross-diagonal decomposition ZG method. It is found that, for constant rate of production, the power index n of the model influences the pressure distribution considerably, particularly in the vicinity of a single well. The well-bore pressure of Leibenzonian fluid is lower than that of the power-law fluid in the case of the same parameter B and the power index n = 0.5.

  20. Finite Element Modeling of a Fluid Filled Cylindrical Shell with Active Constrained Layer Damping

    Institute of Scientific and Technical Information of China (English)

    ZHANG Yi; ZHANG Zhi-yi; TONG Zong-peng; HUA Hong-xing

    2005-01-01

    On the basis of the piezoelectric theory, Mindlin plate theory, viscoelastic theory and ideal fluid equa tion, the finite element modeling of a fluid-filled cylindrical shell with active constrained layer damping (ACLD) was discussed. Energy methods and Lagrange's equation were used to obtain dynamic equations of the cylindrical shell with ACLD treatments, which was modeled as well with the finite element method. The GHM (Golla-Hughes-McTavish) method was applied to model the frequency dependent damping of viscoelastic material. Ideal and incompressible fluid was considered to establish the dynamic equations of the fluid-filled cylindrical shell with ACLD treatments, Numerical results obtained from the finite element analysis were compared with those from an experiment. The comparison shows that the proposed modeling method is accurate and reliable.

  1. Large Deviations for Stochastic Models of Two-Dimensional Second Grade Fluids

    Energy Technology Data Exchange (ETDEWEB)

    Zhai, Jianliang, E-mail: zhaijl@ustc.edu.cn [University of Science and Technology of China, School of Mathematical Sciences (China); Zhang, Tusheng, E-mail: Tusheng.Zhang@manchester.ac.uk [University of Manchester, School of Mathematics (United Kingdom)

    2017-06-15

    In this paper, we establish a large deviation principle for stochastic models of incompressible second grade fluids. The weak convergence method introduced by Budhiraja and Dupuis (Probab Math Statist 20:39–61, 2000) plays an important role.

  2. Formation of droplet interface bilayers in a Teflon tube

    Science.gov (United States)

    Walsh, Edmond; Feuerborn, Alexander; Cook, Peter R.

    2016-09-01

    Droplet-interface bilayers (DIBs) have applications in disciplines ranging from biology to computing. We present a method for forming them manually using a Teflon tube attached to a syringe pump; this method is simple enough it should be accessible to those without expertise in microfluidics. It exploits the properties of interfaces between three immiscible liquids, and uses fluid flow through the tube to pack together drops coated with lipid monolayers to create bilayers at points of contact. It is used to create functional nanopores in DIBs composed of phosphocholine using the protein α-hemolysin (αHL), to demonstrate osmotically-driven mass transfer of fluid across surfactant-based DIBs, and to create arrays of DIBs. The approach is scalable, and thousands of DIBs can be prepared using a robot in one hour; therefore, it is feasible to use it for high throughput applications.

  3. Formation of droplet interface bilayers in a Teflon tube.

    Science.gov (United States)

    Walsh, Edmond; Feuerborn, Alexander; Cook, Peter R

    2016-09-29

    Droplet-interface bilayers (DIBs) have applications in disciplines ranging from biology to computing. We present a method for forming them manually using a Teflon tube attached to a syringe pump; this method is simple enough it should be accessible to those without expertise in microfluidics. It exploits the properties of interfaces between three immiscible liquids, and uses fluid flow through the tube to pack together drops coated with lipid monolayers to create bilayers at points of contact. It is used to create functional nanopores in DIBs composed of phosphocholine using the protein α-hemolysin (αHL), to demonstrate osmotically-driven mass transfer of fluid across surfactant-based DIBs, and to create arrays of DIBs. The approach is scalable, and thousands of DIBs can be prepared using a robot in one hour; therefore, it is feasible to use it for high throughput applications.

  4. Formation of droplet interface bilayers in a Teflon tube

    Science.gov (United States)

    Walsh, Edmond; Feuerborn, Alexander; Cook, Peter R.

    2016-01-01

    Droplet-interface bilayers (DIBs) have applications in disciplines ranging from biology to computing. We present a method for forming them manually using a Teflon tube attached to a syringe pump; this method is simple enough it should be accessible to those without expertise in microfluidics. It exploits the properties of interfaces between three immiscible liquids, and uses fluid flow through the tube to pack together drops coated with lipid monolayers to create bilayers at points of contact. It is used to create functional nanopores in DIBs composed of phosphocholine using the protein α-hemolysin (αHL), to demonstrate osmotically-driven mass transfer of fluid across surfactant-based DIBs, and to create arrays of DIBs. The approach is scalable, and thousands of DIBs can be prepared using a robot in one hour; therefore, it is feasible to use it for high throughput applications. PMID:27681313

  5. Modeling the endosomal escape of cell-penetrating peptides: transmembrane pH gradient driven translocation across phospholipid bilayers.

    Science.gov (United States)

    Magzoub, Mazin; Pramanik, Aladdin; Gräslund, Astrid

    2005-11-15

    Cell-penetrating peptides (CPPs) are able to mediate the efficient cellular uptake of a wide range of cargoes. Internalization of a number of CPPs requires uptake by endocytosis, initiated by binding to anionic cell surface heparan sulfate (HS), followed by escape from endosomes. To elucidate the endosomal escape mechanism, we have modeled the process for two CPPs: penetratin (pAntp) and the N-terminal signal peptide of the unprocessed bovine prion protein (bPrPp). Large unilamellar phospholipid vesicles (LUVs) were produced encapsulating either peptide, and an ionophore, nigericin, was used to create a transmembrane pH gradient (DeltapH(mem), inside acidic) similar to the one arising in endosomes in vivo. In the absence of DeltapH(mem), no pAntp escape from the LUVs is observed, while a fraction of bPrPp escapes. In the presence of DeltapH(mem), a significant amount of pAntp escapes and an even higher degree of bPrPp escape takes place. These results, together with the differences in kinetics of escape, indicate different escape mechanisms for the two peptides. A minimum threshold peptide concentration exists for the escape of both peptides. Coupling of the peptides to a cargo reduces the fraction escaping, while complexation with HS significantly hinders the escape. Fluorescence correlation spectroscopy results show that during the escape process the LUVs are intact. Taken together, these results suggest a model for endosomal escape of CPPs: DeltapH(mem)-mediated mechanism, following dissociation from HS of the peptides, above a minimum threshold peptide concentration, in a process that does not involve lysis of the vesicles.

  6. A Quality Function Deployment-Based Model for Cutting Fluid Selection

    Directory of Open Access Journals (Sweden)

    Kanika Prasad

    2016-01-01

    Full Text Available Cutting fluid is applied for numerous reasons while machining a workpiece, like increasing tool life, minimizing workpiece thermal deformation, enhancing surface finish, flushing away chips from cutting surface, and so on. Hence, choosing a proper cutting fluid for a specific machining application becomes important for enhanced efficiency and effectiveness of a manufacturing process. Cutting fluid selection is a complex procedure as the decision depends on many complicated interactions, including work material’s machinability, rigorousness of operation, cutting tool material, metallurgical, chemical, and human compatibility, reliability and stability of fluid, and cost. In this paper, a decision making model is developed based on quality function deployment technique with a view to respond to the complex character of cutting fluid selection problem and facilitate judicious selection of cutting fluid from a comprehensive list of available alternatives. In the first example, HD-CUTSOL is recognized as the most suitable cutting fluid for drilling holes in titanium alloy with tungsten carbide tool and in the second example, for performing honing operation on stainless steel alloy with cubic boron nitride tool, CF5 emerges out as the best honing fluid. Implementation of this model would result in cost reduction through decreased manpower requirement, enhanced workforce efficiency, and efficient information exploitation.

  7. Bianchi Type-IX viscous fluid cosmological model in general relativity

    Indian Academy of Sciences (India)

    Raj Bali; Mahesh Kumar Yadav

    2005-02-01

    Bianchi Type-IX viscous fluid cosmological model is investigated. To get a deterministic model, we have assumed the condition = ( is a constant) between metric potentials and where is the coefficient of shear viscosity and the scalar of expansion in the model. The coefficient of bulk viscosity () is taken as constant. The physical and geometrical aspects of the model are also discussed.

  8. A Lattice Boltzmann Model for Fluid-Solid Coupling Heat Transfer in Fractal Porous Media

    Institute of Scientific and Technical Information of China (English)

    CAI Jun; HUAI Xiu-Lan

    2009-01-01

    We report a lattice Boltzmann model that can be used to simulate fluid-solid coupling heat transfer in fractal porous media.A numerical simulation is conducted to investigate the temperature evolution under different ratios of thermal conductivity of solid matrix of porous media to that of fluid.The accordance of our simulation results with the solutions from the conventional CFD method indicates the feasibility and the reliability for the developed lattice Boltzmann model to reveal the phenomena and rules of fluid-solid coupling heat transfer in complex porous structures.

  9. Direct computation of two-phase icosahedral equilibria of lipid bilayer vesicles

    Science.gov (United States)

    Zhao, Siming; Healey, Timothy; Li, Qingdu

    2017-02-01

    Correctly formulated continuum models for lipid-bilayer membranes present a significant challenge to computational mechanics. In particular, the mid-surface behavior is that of a 2-dimensional fluid, while the membrane resists bending much like an elastic shell. Here we consider a well-known Helfrich-Cahn-Hilliard model for two-phase lipid-bilayer vesicles, incorporating mid-surface fluidity, curvature elasticity and a phase field. We present a systematic approach to the direct computation of vesical configurations possessing icosahedral symmetry, which have been observed in experiment and whose mathematical existence has recently been established. We first introduce a radial-graph formulation to overcome the difficulties associated with fluidity within a conventional Lagrangian description. We use the so-called subdivision surface finite element method combined with an icosahedral-symmetric mesh. The resulting discrete equations are well-conditioned and inherit equivariance properties under a representation of the icosahedral group. We use group-theoretic methods to obtain a reduced problem that captures all icosahedral-symmetric solutions of the full problem. Finally we explore the behavior of our reduced model, varying numerous physical parameters present in the mathematical model.

  10. Thermodynamically consistent mesoscopic fluid particle models for a van der Waals fluid

    OpenAIRE

    Serrano, Mar; Español, Pep

    2000-01-01

    The GENERIC structure allows for a unified treatment of different discrete models of hydrodynamics. We first propose a finite volume Lagrangian discretization of the continuum equations of hydrodynamics through the Voronoi tessellation. We then show that a slight modification of these discrete equations has the GENERIC structure. The GENERIC structure ensures thermodynamic consistency and allows for the introduction of correct thermal noise. In this way, we obtain a consistent discrete model ...

  11. Computational Fluid Dynamics Modelling of Hydraulics and Sedimentation in Process Reactors During Aeration Tank Settling

    DEFF Research Database (Denmark)

    Dam Jensen, Mette; Ingildsen, Pernille; Rasmussen, Michael R.;

    2005-01-01

    shown to be more effective than others. To improve the design of less effective plants Computational Fluid Dynamics (CFD) modelling of hydraulics and sedimentation has been applied. The paper discusses the results at one particular plant experiencing problems with partly short-circuiting of the inlet...... been suggested and tested by means of computational fluid dynamics modelling. The most promissing design change have been found and reported....

  12. Blood clotting reactions on nanoscale phospholipid bilayers.

    Science.gov (United States)

    Morrissey, James H; Pureza, Vincent; Davis-Harrison, Rebecca L; Sligar, Stephen G; Ohkubo, Y Zenmei; Tajkhorshid, Emad

    2008-01-01

    Blood clotting reactions, such as those catalyzed by the tissue factor:factor VIIa complex (TF:FVIIa), assemble on membrane surfaces containing anionic phospholipids such as phosphatidylserine (PS). In fact, membrane binding is critical for the function of most of the steps in the blood clotting cascade. In spite of this, our understanding of how the membrane contributes to catalysis, or even how these proteins interact with phospholipids, is incomplete. Making matters more complicated, membranes containing mixtures of PS and neutral phospholipids are known to spontaneously form PS-rich membrane microdomains in the presence of plasma concentrations of calcium ions, and it is likely that blood-clotting proteases such as TF:FVIIa partition into these PS-rich microdomains. Unfortunately, little is known about how membrane microdomain composition influences the activity of blood-clotting proteases, which is typically not under experimental control even in "simple" model membranes. Our laboratories have developed and applied new technologies for studying membrane proteins to gain insights into how blood-clotting protease-cofactor pairs assemble and function on membrane surfaces. This includes using a novel, nanoscale bilayer system (Nanodiscs) that permits assembling blood-clotting protease-cofactor pairs on stable bilayers containing from 65 to 250 phospholipid molecules per leaflet. We have used this system to investigate how local (nanometer-scale) changes in phospholipid bilayer composition modulate TF:FVIIa activity. We have also used detailed molecular-dynamics simulations of nanoscale bilayers to provide atomic-scale predictions of how the membrane-binding domain of factor VIIa interacts with PS in membranes.

  13. Fluid-fluid and fluid-solid transitions in the Kern-Frenkel model from Barker-Henderson thermodynamic perturbation theory

    Science.gov (United States)

    Gögelein, Christoph; Romano, Flavio; Sciortino, Francesco; Giacometti, Achille

    2012-03-01

    We study the Kern-Frenkel model for patchy colloids using Barker-Henderson second-order thermodynamic perturbation theory. The model describes a fluid where hard sphere particles are decorated with one patch, so that they interact via a square-well potential if they are sufficiently close one another, and if patches on each particle are properly aligned. Both the gas-liquid and fluid-solid phase coexistences are computed and contrasted against corresponding Monte Carlo simulations results. We find that the perturbation theory describes rather accurately numerical simulations all the way from a fully covered square-well potential down to the Janus limit (half coverage). In the region where numerical data are not available (from Janus to hard-spheres), the method provides estimates of the location of the critical lines that could serve as a guideline for further efficient numerical work at these low coverages. A comparison with other techniques, such as integral equation theory, highlights the important aspect of this methodology in the present context.

  14. Fluid-Structure Interaction Effects Modeling for the Modal Analysis of a Steam Generator Tube Bundle

    Energy Technology Data Exchange (ETDEWEB)

    Sigrist, J.F. [DCNS Prop, Serv Tech et Sci, F-44620 La Montagne, (France); Broc, D. [CEA Saclay, Serv Etud Mecan et Sism, F-91191 Gif Sur Yvette, (France)

    2009-07-01

    Seismic analysis of steam generator is of paramount importance in the safety assessment of nuclear installations. These analyses require, in particular, the calculation of frequency, mode shape, and effective modal mass of the system Eigenmodes. As fluid-structure interaction effects can significantly affect the dynamic behavior of immersed structures, the numerical modeling of the steam generator has to take into account FSI. A complete modeling of heat exchangers (including pressure vessel, tubes, and fluid) is not accessible to the engineer for industrial design studies. In the past decades, homogenization methods have been studied and developed in order to model tubes and fluid through an equivalent continuous media, thus avoiding the tedious task to mesh all structure and fluid sub-domains within the tube bundle. Few of these methods have nonetheless been implemented in industrial finite element codes. In a previous paper (Sigrist, 2007, 'Fluid-Structure Interaction Effects Modeling for the Modal Analysis of a Nuclear Pressure Vessel', J. Pressure Vessel Technol., 123, p. 1-6), a homogenization method has been applied to an industrial case for the modal analysis of a nuclear rector with internal structures and coupling effects modeling. The present paper aims at investigating the extension of the proposed method for the dynamic analysis of tube bundles with fluid-structure interaction modeling. The homogenization method is compared with the classical coupled method in terms of eigenfrequencies, Eigenmodes, and effective modal masses. (authors)

  15. Numerical modeling of fluid flow with rafts: An application to lava flows

    Science.gov (United States)

    Tsepelev, Igor; Ismail-Zadeh, Alik; Melnik, Oleg; Korotkii, Alexander

    2016-07-01

    Although volcanic lava flows do not significantly affect the life of people, its hazard is not negligible as hot lava kills vegetation, destroys infrastructure, and may trigger a flood due to melting of snow/ice. The lava flow hazard can be reduced if the flow patterns are known, and the complexity of the flow with debris is analyzed to assist in disaster risk mitigation. In this paper we develop three-dimensional numerical models of a gravitational flow of multi-phase fluid with rafts (mimicking rigid lava-crust fragments) on a horizontal and topographic surfaces to explore the dynamics and the interaction of lava flows. We have obtained various flow patterns and spatial distribution of rafts depending on conditions at the surface of fluid spreading, obstacles on the way of a fluid flow, raft landing scenarios, and the size of rafts. Furthermore, we analyze two numerical models related to specific lava flows: (i) a model of fluid flow with rafts inside an inclined channel, and (ii) a model of fluid flow from a single vent on an artificial topography, when the fluid density, its viscosity, and the effusion rate vary with time. Although the studied models do not account for lava solidification, crust formation, and its rupture, the results of the modeling may be used for understanding of flows with breccias before a significant lava cooling.

  16. Modeling Analysis of Bi-Layer Ni-(ZrO2x(Y2O31−x Anodes for Anode-Supported Intermediate Temperature-Solid Oxide Fuel Cells

    Directory of Open Access Journals (Sweden)

    Anna Enrico

    2014-08-01

    Full Text Available Intermediate temperature-solid oxide fuel cell (IT-SOFC Ni-(ZrO2x(Y2O31−x (Ni-YSZ anodes formed by two layers, with different thicknesses and morphologies, offer the possibility of obtaining adequate electrochemical performance coupled to satisfactory mechanical properties. We investigate bi-layered Ni-YSZ anodes from a modeling point of view. The model includes reaction kinetics (Butler-Volmer equation, mass transport (Dusty-Gas model, and charge transport (Ohm’s law, and allows to gain an insight into the distribution of the electrochemical reaction within the electrode. Additionally, the model allows to evaluate a reciprocal overall electrode resistance 1/Rp ≈ 6 S·cm−2 for a bi-layer electrode formed by a 10 µm thick active layer (AL composed of 0.25 µm radius Ni and YSZ particles (34% vol. Ni, coupled to a 700 µm thick support layer (SL formed by 0.5 µm radius Ni and YSZ particles (50% vol. Ni, and operated at a temperature of 1023 K. Simulation results compare satisfactorily to literature experimental data. The model allows to investigate, in detail, the effect of morphological and geometric parameters on the various sources of losses, which is the first step for an optimized electrode design.

  17. Fluid identification in tight sandstone reservoirs based on a new rock physics model

    Science.gov (United States)

    Sun, Jianmeng; Wei, Xiaohan; Chen, Xuelian

    2016-08-01

    To identify pore fluids, we establish a new rock physics model named the tight sandstone dual-porosity model based on the Voigt-Reuss-Hill model, approximation for the Xu-White model and Gassmann’s equation to predict elastic wave velocities. The modeling test shows that predicted sonic velocities derived from this rock physics model match well with measured ones from logging data. In this context, elastic moduli can be derived from the model. By numerical study and characteristic analyzation of different elastic properties, a qualitative fluid identification method based on Poisson’s ratio and the S-L dual-factor method based on synthetic moduli is proposed. Case studies of these two new methods show the applicability in distinguishing among different fluids and different layers in tight sandstone reservoirs.

  18. Mathematical Model of Fluid Flow and Solidification in Mold Region of Continuous Slab Casting

    Institute of Scientific and Technical Information of China (English)

    谭利坚; 沈厚发; 柳百成

    2003-01-01

    To simulate the phenomena in the mold region of continuous casting by coupling fluid flow and solidification, a three-dimensional mathematical model has been developedbased on the K-ε turbulence equations and the SIMPLER algorithm. A pseudo source term was introduced into the energy equation to account for the latent heat and kinetic energy. The fluid flow in the mushy zone was calculated by defining the fluid viscosity as a function of the solid fraction in the mushy zone. Fine meshes in the solid region improve convergence and reduce iteration time. Comparison of the fluid flow and temperature distribution with and without solidification shows that although the solid shell in the mold is thin, it still greatly affects the flow pattern. The numerical results obtained provide details of the fluid flow and solidification phenomena which can be used to optimize the nozzle structure and other process parameters in continuous casting.

  19. A Thermodynamic Model for Square-well Chain Fluid: Theory and Monte Carlo Simulation

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    A thermodynamic model for the freely jointed square-well chain fluids was developed based on the thermodynamic perturbation theory of Barker-Henderson, Zhang and Wertheim. In this derivation Zhang's expressions for square-well monomers improved from Barker-Henderson compressibility approximation were adopted as the reference fluid, and Wertheim's polymerization method was used to obtain the free energy term due to the bond connectivity. An analytic expression for the Helmholtz free energy of the square-well chain fluids was obtained. The expression without adjustable parameters leads to the thermodynamic consistent predictions of the compressibility factors, residual internal energy and constant-volume heat capacity for dimer,4-mer, 8-mer and 16-mer square-well fluids. The results are in good agreement with the Monte Carlo simulation. To obtain the MC data of residual internal energy and the constant-volume heat capacity needed, NVT MC simulations were performed for these square-well chain fluids.

  20. A nonlocal model for fluid-structure interaction with applications in hydraulic fracturing

    CERN Document Server

    Turner, Daniel Z

    2012-01-01

    Modeling important engineering problems related to flow-induced damage (in the context of hydraulic fracturing among others) depends critically on characterizing the interaction of porous media and interstitial fluid flow. This work presents a new formulation for incorporating the effects of pore pressure in a nonlocal representation of solid mechanics. The result is a framework for modeling fluid-structure interaction problems with the discontinuity capturing advantages of an integral based formulation. A number of numerical examples are used to show that the proposed formulation can be applied to measure the effect of leak-off during hydraulic fracturing as well as modeling consolidation of fluid saturated rock and surface subsidence caused by fluid extraction from a geologic reservoir. The formulation incorporates the effect of pore pressure in the constitutive description of the porous material in a way that is appropriate for nonlinear materials, easily implemented in existing codes, straightforward in i...

  1. Fluid stiction modeling for quickly separating plates considering the liquid tensile strength

    DEFF Research Database (Denmark)

    Roemer, Daniel Beck; Johansen, Per; Pedersen, Henrik C.;

    2015-01-01

    separation speed and low plate distance are present. In the case of small initial plate separation, fluid tension is known to develop and the stiction force may exceed the maximum stiction force calculated by assuming strictly positive pressures in the fluid film. In this paper, a model for simulating......Fluid stiction may significantly influence the dynamic behavior when attempting to quickly separate two plates in close contact. The liquid fluid film, filling the gap between the plates, experiences a pressure drop resulting from an increasing distance, and cavitation may appear if sufficient...... the need for finite element/volume methods. The considered geometry is two long parallel plates submerged in liquid, as present in many valve applications. The model is compared to experimental measurements, and it is found that the model is able to predict the stiction effect with reasonable accuracy...

  2. Chemical potential of a hard sphere fluid adsorbed in model disordered polydisperse matrices.

    Science.gov (United States)

    de Leon, Aned; Pizio, O; Sokołowski, S

    2006-06-01

    We consider a model for adsorption of a simple fluid in disordered polydisperse adsorbents. The fluid consists of hard sphere particles. On the other hand, the adsorbents of this study are modeled as a collection of hard spheres with their diameter obeying a certain distribution function. Our focus is in the evaluation of the chemical potential of the fluid immersed in such a polydisperse material. It permits us to obtain porosity and pore size distribution for the adsorbent, as well as a set of adsorption isotherms. The latter have been calculated theoretically and by grand canonical Monte Carlo simulations. We observe that the width of assumed polydispersity distribution affects all the properties of the system. Nevertheless, the effect of matrix packing is dominant in determining adsorption for this class of models. We are convinced that the matrix structures generated via more sophisticated algorithms would exhibit stronger effects of polydispersity on the entire set of properties of adsorbed simple fluids.

  3. Computational fluid dynamics in fire engineering theory, modelling and practice

    CERN Document Server

    Yuen, Kwok Kit

    2009-01-01

    Fire and combustion presents a significant engineering challenge to mechanical, civil and dedicated fire engineers, as well as specialists in the process and chemical, safety, buildings and structural fields. We are reminded of the tragic outcomes of 'untenable' fire disasters such as at King's Cross underground station or Switzerland's St Gotthard tunnel. In these and many other cases, computational fluid dynamics (CFD) is at the forefront of active research into unravelling the probable causes of fires and helping to design structures and systems to ensure that they are less likely in the f

  4. Sensitivity analysis of bi-layered ceramic dental restorations.

    Science.gov (United States)

    Zhang, Zhongpu; Zhou, Shiwei; Li, Qing; Li, Wei; Swain, Michael V

    2012-02-01

    The reliability and longevity of ceramic prostheses have become a major concern. The existing studies have focused on some critical issues from clinical perspectives, but more researches are needed to address fundamental sciences and fabrication issues to ensure the longevity and durability of ceramic prostheses. The aim of this paper was to explore how "sensitive" the thermal and mechanical responses, in terms of changes in temperature and thermal residual stress of the bi-layered ceramic systems and crown models will be with respect to the perturbation of the design variables chosen (e.g. layer thickness and heat transfer coefficient) in a quantitative way. In this study, three bi-layered ceramic models with different geometries are considered: (i) a simple bi-layered plate, (ii) a simple bi-layer triangle, and (iii) an axisymmetric bi-layered crown. The layer thickness and convective heat transfer coefficient (or cooling rate) seem to be more sensitive for the porcelain fused on zirconia substrate models. The resultant sensitivities indicate a critical importance of the heat transfer coefficient and thickness ratio of core to veneer on the temperature distributions and residual stresses in each model. The findings provide a quantitative basis for assessing the effects of fabrication uncertainties and optimizing the design of ceramic prostheses. Copyright © 2011 Academy of Dental Materials. Published by Elsevier Ltd. All rights reserved.

  5. COMPUTATIONAL FLUID DYNAMICS MODELING OF SCALED HANFORD DOUBLE SHELL TANK MIXING - CFD MODELING SENSITIVITY STUDY RESULTS

    Energy Technology Data Exchange (ETDEWEB)

    JACKSON VL

    2011-08-31

    The primary purpose of the tank mixing and sampling demonstration program is to mitigate the technical risks associated with the ability of the Hanford tank farm delivery and celtification systems to measure and deliver a uniformly mixed high-level waste (HLW) feed to the Waste Treatment and Immobilization Plant (WTP) Uniform feed to the WTP is a requirement of 24590-WTP-ICD-MG-01-019, ICD-19 - Interface Control Document for Waste Feed, although the exact definition of uniform is evolving in this context. Computational Fluid Dynamics (CFD) modeling has been used to assist in evaluating scaleup issues, study operational parameters, and predict mixing performance at full-scale.

  6. The simplest model for non-congruent fluid-fluid phase transition in Coulomb system

    CERN Document Server

    Stroev, Nikita

    2015-01-01

    The simplest model for non-congruent phase transition of gas-liquid type was developed in frames of modified model with no associations of a binary ionic mixture (BIM) on a homogeneous compressible ideal background (or non-ideal) electron gas /BIM($\\sim$)/. The analytical approximation for equation of state equation of state of Potekhin and Chabrier of fully ionized electron-ionic plasma was used for description of the ion-ion correlations (Coulomb non-ideality) in combination with ``linear mixture'' (LM) approximation. Phase equilibrium for the charged species was calculated according to the Gibbs-Guggenheim conditions. The presently considered BIM($\\sim$) model allows to calculate full set of parameters for phase boundaries of non-congruent variant of phase equilibrium and to study all features for this non-congruent phase transition realization in Coulomb system in comparison with the simpler (standard) forced-congruent evaporation mode. In particular, in BIM($\\sim$) there were reproduced two-dimensional r...

  7. Modeling fluid-structure interactions in shallow microchannels

    Science.gov (United States)

    Shidhore, Tanmay C.; Christov, Ivan C.

    2016-11-01

    Rectangular microfluidic conduits with deformable walls are some of the simplest and most extensively studied microfluidic devices, primarily due to their practical design applications in a variety of fields like biology, medical diagnostics (e.g., lab-on-a-chip), nanotechnology, etc. Experimentally, these devices are found to deform into a non-rectangular cross-section due to fluid-structure interactions occurring at the channel walls. These deformations significantly affect the flow profile, which results in a non-linear relationship between the flow rate and the pressure drop, which cannot be explained by a 'generalised Poiseuille flow solution'. To this end, we perform a numerical study of these fluid-structure interactions and their effect on the flow rate and the pressure drop occurring in microfluidic conduits with a single deformable wall. The behavior of several shallow conduit systems (l >> w >> h) with rigid base and side walls and a soft top wall (e.g., PDMS) is simulated under laminar flow conditions using the commercial software suite ANSYS. Simulation results are compared against experimental pressure drop-flow rate data from the literature and also newly developed analytical expressions for the wall deformation, the pressure and the normalized flow rate.

  8. OpenFLUID: an open-source software environment for modelling fluxes in landscapes

    Science.gov (United States)

    Fabre, Jean-Christophe; Rabotin, Michaël; Crevoisier, David; Libres, Aline; Dagès, Cécile; Moussa, Roger; Lagacherie, Philippe; Raclot, Damien; Voltz, Marc

    2013-04-01

    Integrative landscape functioning has become a common concept in environmental management. Landscapes are complex systems where many processes interact in time and space. In agro-ecosystems, these processes are mainly physical processes, including hydrological-processes, biological processes and human activities. Modelling such systems requires an interdisciplinary approach, coupling models coming from different disciplines, developed by different teams. In order to support collaborative works, involving many models coupled in time and space for integrative simulations, an open software modelling platform is a relevant answer. OpenFLUID is an open source software platform for modelling landscape functioning, mainly focused on spatial fluxes. It provides an advanced object-oriented architecture allowing to i) couple models developed de novo or from existing source code, and which are dynamically plugged to the platform, ii) represent landscapes as hierarchical graphs, taking into account multi-scale, spatial heterogeneities and landscape objects connectivity, iii) run and explore simulations in many ways : using the OpenFLUID software interfaces for users (command line interface, graphical user interface), or using external applications such as GNU R through the provided ROpenFLUID package. OpenFLUID is developed in C++ and relies on open source libraries only (Boost, libXML2, GLib/GTK, OGR/GDAL, …). For modelers and developers, OpenFLUID provides a dedicated environment for model development, which is based on an open source toolchain, including the Eclipse editor, the GCC compiler and the CMake build system. OpenFLUID is distributed under the GPLv3 open source license, with a special exception allowing to plug existing models licensed under any license. It is clearly in the spirit of sharing knowledge and favouring collaboration in a community of modelers. OpenFLUID has been involved in many research applications, such as modelling of hydrological network

  9. Lateral organization, bilayer asymmetry, and inter-leaflet coupling of biological membranes.

    Science.gov (United States)

    Nickels, Jonathan D; Smith, Jeremy C; Cheng, Xiaolin

    2015-11-01

    Understanding of cell membrane organization has evolved significantly from the classic fluid mosaic model. It is now recognized that biological membranes are highly organized structures, with differences in lipid compositions between inner and outer leaflets and in lateral structures within the bilayer plane, known as lipid rafts. These organizing principles are important for protein localization and function as well as cellular signaling. However, the mechanisms and biophysical basis of lipid raft formation, structure, dynamics and function are not clearly understood. One key question, which we focus on in this review, is how lateral organization and leaflet compositional asymmetry are coupled. Detailed information elucidating this question has been sparse because of the small size and transient nature of rafts and the experimental challenges in constructing asymmetric bilayers. Resolving this mystery will require advances in both experimentation and modeling. We discuss here the preparation of model systems along with experimental and computational approaches that have been applied in efforts to address this key question in membrane biology. We seek to place recent and future advances in experimental and computational techniques in context, providing insight into in-plane and transverse organization of biological membranes.

  10. Molecular modelling and simulation of the surface tension of real quadrupolar fluids

    CERN Document Server

    Werth, Stephan; Klein, Peter; Küfer, Karl-Heinz; Horsch, Martin; Hasse, Hans

    2014-01-01

    Molecular modelling and simulation of the surface tension of fluids with force fields is discussed. 29 real fluids are studied, including nitrogen, oxygen, carbon dioxide, carbon monoxide, fluorine, chlorine, bromine, iodine, ethane, ethylene, acetylene, propyne, propylene, propadiene, carbon disulfide, sulfur hexafluoride, and many refrigerants. The fluids are represented by two-centre Lennard-Jones plus point quadrupole models from the literature. These models were adjusted only to experimental data of the vapour pressure and saturated liquid density so that the results for the surface tension are predictions. The deviations between the predictions and experimental data for the surface tension are of the order of 20 percent. The surface tension is usually overestimated by the models. For further improvements, data on the surface tension can be included in the model development. A suitable strategy for this is multi-criteria optimization based on Pareto sets. This is demonstrated using the model for carbon d...

  11. RKKY interaction in bilayer graphene

    Science.gov (United States)

    Mohammadi, Yawar; Moradian, Rostam

    2015-12-01

    We study the RKKY interaction between two magnetic impurities located on the same layer (intralayer case) or on different layers (interlayer case) in undoped bilayer graphene (BLG) in the four-bands model, by directly calculating the Green functions in the eigenvalues and eigenvectors representation. Our results show that both intra- and interlayer RKKY interactions between two magnetic impurities located on the same (opposite) sublattice are always ferromagnetic (antiferromagnetic). Furthermore we find unusual long-distance decay of the RKKY interaction in BLG. The intralyer RKKY interactions between two magnetic impurities located on the same sublattice, J AnAn(R) and J BnBn(R), decay closely as 1 /R6 and 1 /R2 at large impurity distances respectively, but when they are located on opposite sublattices the RKKY interactions exhibit 1 /R4 decays approximately. In the interlayer case, the RKKY interactions between two magnetic impurities located on the same sublattice show a decay close to 1 /R4 at large impurity distances, but if two magnetic impurities be on opposite sublattices the RKKY interactions, J A1B2(R) and J B1A2(R), decay closely as 1 /R6 and 1 /R2 respectively. Both intra- and interlayer RKKY interactions have anisotropic oscillatory factors which for intralayer case is equal to that for single layer graphene (SLG). Our results at weak and strong interlayer coupling limits reduce to the RKKY interaction of SLG and that of BLG in the two-bands approximation respectively.

  12. Topologically-Mediated Membrane Dynamics in Supported Lipid Bilayers

    Science.gov (United States)

    Gilmore, Sean Fitzpatrick

    2011-12-01

    This thesis is primarily design driven. It describes the development and application of dynamically tunable class of solid-fluid interfaces, which serves as a test-bed configuration for fundamental studies of soft condensed matter in reduced dimension. My specific focus is in developing these interfaces to recapitulate topology-mediated phenomenon in biological lipid membranes. The phenomena that the interfacial topology manifest in diffusional characteristics in model membranes are probed using wide-area epifluorescence microscopy and a semi-quantitative analysis of dynamic recovery following photobleaching. Furthermore, real-time remodeling of the membrane-substrate interface topology is shown to provide fundamental information regarding curvature-dependent molecular sorting and resorting. Specifically our experiments using putative raft composition mixtures confirm the conformation-dependent alignment of liquid-ordered domains and moreover reveal domain-domain interactions for the first time in model bilayers. Ongoing work aimed at delineating these inter-domain interactions in terms of membrane elastic properties is being performed. Future work that includes peptide-driven membrane deformation and sorting, as well large-scale, curvature-driven in vivo sorting of lipids is proposed and discussed.

  13. Bianchi VI cosmological models representing perfect fluid and radiation with electric-type free gravitational fields

    Science.gov (United States)

    Roy, S. R.; Banerjee, S. K.

    1992-11-01

    A homogeneous Bianchi type VIh cosmological model filled with perfect fluid, null electromagnetic field and streaming neutrinos is obtained for which the free gravitational field is of the electric type. The barotropic equation of statep = (γ-1)ɛ is imposed in the particular case of Bianchi VI0 string models. Various physical and kinematical properties of the models are discussed.

  14. A computational fluid dynamics model for designing heat exchangers based on natural convection

    NARCIS (Netherlands)

    Dirkse, M.H.; Loon, van W.K.P.; Walle, van der T.; Speetjens, S.L.; Bot, G.P.A.

    2006-01-01

    A computational fluid dynamics model was created for the design of a natural convection shell-and-tube heat exchanger with baffles. The flow regime proved to be turbulent and this was modelled using the k¿¿ turbulence model. The features of the complex geometry were simplified considerably resulting

  15. Optimization of a new flow design for solid oxide cells using computational fluid dynamics modelling

    DEFF Research Database (Denmark)

    Duhn, Jakob Dragsbæk; Jensen, Anker Degn; Wedel, Stig;

    2016-01-01

    Design of a gas distributor to distribute gas flow into parallel channels for Solid Oxide Cells (SOC) is optimized, with respect to flow distribution, using Computational Fluid Dynamics (CFD) modelling. The CFD model is based on a 3d geometric model and the optimized structural parameters include...

  16. Modeling and Numerical Simulation of Yield Viscoplastic Fluid Flow in Concentric and Eccentric Annuli

    Institute of Scientific and Technical Information of China (English)

    毛在砂; 杨超; Vassilios C. Kelessidis

    2012-01-01

    Numerical solution of yield viscoplastic fluid flow is hindered by the singularity inherent to the Herschel-Bulkley model. A finite difference method over the boundary-fitted orthogonal coordinate system is util- ized to investigate numerically the fully developed steady flow of non-Newtonian yield viscoplastic fluid through concentric and eccentric annuli. The fluid rheology is described with the Herschel-Bulkley model. The numerical simulation based on a continuous viscoplastic approach to the Herschel-Bulkley model is found in poor accordance with the experimental data on volumetric flow rate of a bentonite suspension. A strict mathematical model for Herschel-Bulkley fluid flow is established and the corresponding numerical procedures are proposed. However, only the case of flow of a Herschel-Bulkley fluid in a concentric annulus is resolved based on the presumed flow stnicture by using the common optimization technique. Possible flow structures in an eccentric afinulus are presumed, and further challenges in numerical simulation of the Herschel-Bulkley fluid flow are suggested.

  17. A General Nonlinear Fluid Model for Reacting Plasma-Neutral Mixtures

    Energy Technology Data Exchange (ETDEWEB)

    Meier, E T; Shumlak, U

    2012-04-06

    A generalized, computationally tractable fluid model for capturing the effects of neutral particles in plasmas is derived. The model derivation begins with Boltzmann equations for singly charged ions, electrons, and a single neutral species. Electron-impact ionization, radiative recombination, and resonant charge exchange reactions are included. Moments of the reaction collision terms are detailed. Moments of the Boltzmann equations for electron, ion, and neutral species are combined to yield a two-component plasma-neutral fluid model. Separate density, momentum, and energy equations, each including reaction transfer terms, are produced for the plasma and neutral equations. The required closures for the plasma-neutral model are discussed.

  18. Modeling study on fluid flow and inclusion motion in 6-strand bloom caster tundishes

    Institute of Scientific and Technical Information of China (English)

    Guanghua Wen; Lifeng Zhang; Ping Tang; Zhenjiang Su; Mingmei Zhu; Wuan Gu; Kewen Zhao

    2004-01-01

    The behavior of fluid flow and particle motion in a 6-strand bloom caster tundish was investigated by a water model and numerical simulation. Compared with a device without flow control, the tundish with flow control has an important effect on the fluid flow pattern and inclusion removal. It is revealed that by non-isothermal process, which is real production condition, the fluid flow in tundish shows a strong buoyancy pattem, which drives particles to move upwards. The particle removal was quantitatively studied by mathematical and physical simulations.

  19. Smoothed particle hydrodynamics modelling in continuum mechanics: fluid-structure interaction

    Directory of Open Access Journals (Sweden)

    Groenenboom P. H. L.

    2009-06-01

    Full Text Available Within this study, the implementation of the smoothed particle hydrodynamics (SPH method solving the complex problem of interaction between a quasi-incompressible fluid involving a free surface and an elastic structure is outlined. A brief description of the SPH model for both the quasi-incompressible fluid and the isotropic elastic solid is presented. The interaction between the fluid and the elastic structure is realised through the contact algorithm. The results of numerical computations are confronted with the experimental as well as computational data published in the literature.

  20. A solid-fluid mixture model allowing for solid dilatation under external pressure

    CERN Document Server

    Sciarra, Giulio; Hutter, Kolumban

    2010-01-01

    A sponge subjected to an increase of the outside fluid pressure expands its volume but nearly mantains its true density and thus gives way to an increase of the interstitial volume. This behaviour, not yet properly described by solid-fluid mixture theories, is studied here by using the Principle of Virtual Power with the most simple dependence of the free energy as a function of the partial apparent densities of the solid and the fluid. The model is capable of accounting for the above mentioned dilatational behaviour, but in order to isolate its essential features more clearly we compromise on the other aspects of deformation.

  1. Exact EGB models for spherical static perfect fluids

    CERN Document Server

    Hansraj, Sudan; Maharaj, Sunil D

    2015-01-01

    We obtain a new exact solution to the field equations in the EGB modified theory of gravity for a 5-dimensional spherically symmetric static distribution. By using a transformation, the study is reduced to the analysis of a single second order nonlinear differential equation. In general the condition of pressure isotropy produces a first order differential equation which is an Abel equation of the second kind. An exact solution is found. The solution is examined for physical admissability. In particular a set of constants is found which ensures that a pressure-free hypersurface exists which defines the boundary of the distribution. Additionally the isotropic pressure and the energy density are shown to be positive within the radius of the sphere. The adiabatic sound speed criterion is also satisfied within the fluid ensuring a subluminal sound speed. Furthermore, the weak, strong and dominant conditions hold throughout the distribution. On setting the Gauss-Bonnet coupling to zero, an exact solution for 5-dim...

  2. Modeling of a continuous pretreatment reactor using computational fluid dynamics.

    Science.gov (United States)

    Berson, R Eric; Dasari, Rajesh K; Hanley, Thomas R

    2006-01-01

    Computational fluid dynamic simulations are employed to predict flow characteristics in a continuous auger driven reactor designed for the dilute acid pretreatment of biomass. Slurry containing a high concentration of biomass solids exhibits a high viscosity, which poses unique mixing issues within the reactor. The viscosity increases significantly with a small increase in solids concentration and also varies with temperature. A well-mixed slurry is desirable to evenly distribute acid on biomass, prevent buildup on the walls of the reactor, and provides an uniform final product. Simulations provide flow patterns obtained over a wide range of viscosities and pressure distributions, which may affect reaction rates. Results provide a tool for analyzing sources of inconsistencies in product quality and insight into future design and operating parameters.

  3. An improved model for noise barriers in a moving fluid

    Science.gov (United States)

    Ahmad, Bashir

    2006-09-01

    We study a problem of diffraction of a cylindrical acoustic wave from an absorbing half plane in a moving fluid introducing Myers' condition [M.K. Myers, On the acoustic boundary condition in the presence of flow, J. Sound Vibration 71 (1980) 429] and present an improved form of the analytic solution for the diffracted field. The importance of the work lies in the fact that Myers' condition (a generalization of Ingard's impedance condition) is now the accepted form of the boundary condition for impedance barriers with flow and hence yields a correct form of the field. The method of solution consists of Fourier transform, Wiener-Hopf technique and the modified method of stationary phase.

  4. Simulation of Tailrace Hydrodynamics Using Computational Fluid Dynamics Models

    Energy Technology Data Exchange (ETDEWEB)

    Cook, Christopher B.; Richmond, Marshall C.

    2001-05-01

    This report investigates the feasibility of using computational fluid dynamics (CFD) tools to investigate hydrodynamic flow fields surrounding the tailrace zone below large hydraulic structures. Previous and ongoing studies using CFD tools to simulate gradually varied flow with multiple constituents and forebay/intake hydrodynamics have shown that CFD tools can provide valuable information for hydraulic and biological evaluation of fish passage near hydraulic structures. These studies however are incapable of simulating the rapidly varying flow fields that involving breakup of the free-surface, such as those through and below high flow outfalls and spillways. Although the use of CFD tools for these types of flow are still an active area of research, initial applications discussed in this report show that these tools are capable of simulating the primary features of these highly transient flow fields.

  5. Five decades of tackling models for stiff fluid dynamics problems a scientific autobiography

    CERN Document Server

    Zeytounian, Radyadour Kh

    2014-01-01

    Rationality - as opposed to 'ad-hoc' - and asymptotics - to emphasize the fact that perturbative methods are at the core of the theory - are the two main concepts associated with the Rational Asymptotic Modeling (RAM) approach in fluid dynamics when the goal is to specifically provide useful models accessible to numerical simulation via high-speed computing. This approach has contributed to a fresh understanding of Newtonian fluid flow problems and has opened up new avenues for tackling real fluid flow phenomena, which are known to lead to very difficult mathematical and numerical problems irrespective of turbulence. With the present scientific autobiography the author guides the reader through his somewhat non-traditional career; first discovering fluid mechanics, and then devoting more than fifty years to intense work in the field. Using both personal and general historical contexts, this account will be of benefit to anyone interested in the early and contemporary developments of an important branch of the...

  6. Permeation of halide anions through phospholipid bilayers occurs by the solubility-diffusion mechanism

    Science.gov (United States)

    Paula, S.; Volkov, A. G.; Deamer, D. W.

    1998-01-01

    Two alternative mechanisms are frequently used to describe ionic permeation of lipid bilayers. In the first, ions partition into the hydrophobic phase and then diffuse across (the solubility-diffusion mechanism). The second mechanism assumes that ions traverse the bilayer through transient hydrophilic defects caused by thermal fluctuations (the pore mechanism). The theoretical predictions made by both models were tested for halide anions by measuring the permeability coefficients for chloride, bromide, and iodide as a function of bilayer thickness, ionic radius, and sign of charge. To vary the bilayer thickness systematically, liposomes were prepared from monounsaturated phosphatidylcholines (PC) with chain lengths between 16 and 24 carbon atoms. The fluorescent dye MQAE (N-(ethoxycarbonylmethyl)-6-methoxyquinolinium bromide) served as an indicator for halide concentration inside the liposomes and was used to follow the kinetics of halide flux across the bilayer membranes. The observed permeability coefficients ranged from 10(-9) to 10(-7) cm/s and increased as the bilayer thickness was reduced. Bromide was found to permeate approximately six times faster than chloride through bilayers of identical thickness, and iodide permeated three to four times faster than bromide. The dependence of the halide permeability coefficients on bilayer thickness and on ionic size were consistent with permeation of hydrated ions by a solubility-diffusion mechanism rather than through transient pores. Halide permeation therefore differs from that of a monovalent cation such as potassium, which has been accounted for by a combination of the two mechanisms depending on bilayer thickness.

  7. Coupled discrete element modeling of fluid injection into dense granular media

    Science.gov (United States)

    Zhang, Fengshou; Damjanac, Branko; Huang, Haiying

    2013-06-01

    The coupled displacement process of fluid injection into a dense granular medium is investigated numerically using a discrete element method (DEM) code PFC2D® coupled with a pore network fluid flow scheme. How a dense granular medium behaves in response to fluid injection is a subject of fundamental and applied research interests to better understand subsurface processes such as fluid or gas migration and formation of intrusive features as well as engineering applications such as hydraulic fracturing and geological storage in unconsolidated formations. The numerical analysis is performed with DEM executing the mechanical calculation and the network model solving the Hagen-Poiseuille equation between the pore spaces enclosed by chains of particles and contacts. Hydromechanical coupling is realized by data exchanging at predetermined time steps. The numerical results show that increase in the injection rate and the invading fluid viscosity and decrease in the modulus and permeability of the medium result in fluid flow behaviors displaying a transition from infiltration-governed to infiltration-limited and the granular medium responses evolving from that of a rigid porous medium to localized failure leading to the development of preferential paths. The transition in the fluid flow and granular medium behaviors is governed by the ratio between the characteristic times associated with fluid injection and hydromechanical coupling. The peak pressures at large injection rates when fluid leakoff is limited compare well with those from the injection experiments in triaxial cells in the literature. The numerical analysis also reveals intriguing tip kinematics field for the growth of a fluid channel, which may shed light on the occurrence of the apical inverted-conical features in sandstone and magma intrusion in unconsolidated formations.

  8. Classical XY model with conserved angular momentum is an archetypal non-Newtonian fluid.

    Science.gov (United States)

    Evans, R M L; Hall, Craig A; Simha, R Aditi; Welsh, Tom S

    2015-04-03

    We find that the classical one-dimensional XY model, with angular-momentum-conserving Langevin dynamics, mimics the non-Newtonian flow regimes characteristic of soft matter when subjected to counterrotating boundaries. An elaborate steady-state phase diagram has continuous and first-order transitions between states of uniform flow, shear-banding, solid-fluid coexistence and slip planes. Results of numerical studies and a concise mean-field constitutive relation offer a paradigm for diverse nonequilibrium complex fluids.

  9. A Tightly Coupled Particle-Fluid Model for DNA-Laden Flows in Complex Microscale Geometries

    Energy Technology Data Exchange (ETDEWEB)

    Trebotich, D; Miller, G H; Colella, P; Graves, D T; Martin, D F; Schwartz, P O

    2004-11-18

    We present a stable and convergent method for the computation of flows of DNA-laden fluids in microchannels with complex geometry. The numerical strategy combines a ball-rod model representation for polymers tightly coupled with a projection method for incompressible viscous flow. We use Cartesian grid embedded boundary methods to discretize the fluid equations in the presence of complex domain boundaries. A sample calculation is presented showing flow through a packed array microchannel in 2D.

  10. Chaotic convective behavior and stability analysis of a fractional viscoelastic fluids model in porous media

    KAUST Repository

    N'Doye, Ibrahima

    2015-05-25

    In this paper, a dynamical fractional viscoelastic fluids convection model in porous media is proposed and its chaotic behavior is studied. A preformed equilibrium points analysis indicates the conditions where chaotic dynamics can be observed, and show the existence of chaos. The behavior and stability analysis of the integer-order and the fractional commensurate and non-commensurate orders of a fractional viscoelastic fluids system, which exhibits chaos, are presented as well.

  11. Numerical Modeling of Multiphase Fluid Flow in Ore-Forming Hydrothermal Systems

    Science.gov (United States)

    Weis, P.; Driesner, T.; Coumou, D.; Heinrich, C. A.

    2007-12-01

    Two coexisting fluid phases - a variably saline liquid and a vapor phase - are ubiquitous in ore-forming and other hydrothermal systems. Understanding the dynamics of phase separation and the distinct physical and chemical evolution of the two fluids probably plays a key role in generating different ore deposit types, e.g. porphyry type, high and low sulfidation Cu-Mo-Au deposits. To this end, processes within hydrothermal systems have been studied with a refined numerical model describing fluid flow in transient porous media (CSP~5.0). The model is formulated on a mass, energy and momentum conserving finite-element-finite-volume (FEFV) scheme and is capable of simulating multiphase flow of NaCl-H20 fluids. Fluid properties are computed from an improved equation of state (SOWAT~2.0). It covers conditions with temperatures of up to 1000 degrees~C, pressures of up to 500 MPa, and fluid salinities of 0~to 100%~NaCl. In particular, the new set-up allows for a more accurate description of fluid phase separation during boiling of hydrothermal fluids into a vapor and a brine phase. The geometric flexibility of the FEFV-meshes allows for investigations of a large variety of geological settings, ranging from ore-forming processes in magmatic hydrothermal system to the dynamics of black smokers at mid-ocean ridges. Simulations demonstrated that hydrothermal convection patterns above cooling plutons are primarily controlled by the system-scale permeability structure. In porphyry systems, high fluid pressures develop in a stock rising from the magma chamber which can lead to rock failure and, eventually, an increase in permeability due to hydrofracturing. Comparisons of the thermal evolution as inferred from modeling studies with data from fluid inclusion studies of the Pb-Zn deposits of Madan, Bulgaria are in a strikingly good agreement. This indicates that cross-comparisons of field observations, analytical data and numerical simulations will become a powerful tool towards a

  12. Electron density analysis of the effects of sugars on the structure of lipid bilayers at low hydration - a preliminary study

    Energy Technology Data Exchange (ETDEWEB)

    Lenné, T.; Kent, B.; Koster, K.L.; Garvey, C.J.; Bryant, G. (ANSTO); (USD); (ANU); (RMIT)

    2012-02-06

    Small angle X-ray scattering is used to study the effects of sugars on membranes during dehydration. Previous work has shown that the bilayer and chain-chain repeat spacings of DPPC bilayers are relatively unaffected by the presence of sugars. In this work we present a preliminary analysis of the electron density profiles of DPPC in the presence of sugars at low hydration. The difficulties of determining the correct phasing are discussed. Sugars and other small solutes have been shown to have an important role in improving the tolerance of a range of species to desiccation and freezing. In particular it has been shown that sugars can stabilize membranes in the fluid membrane phase during dehydration, and in the fully dehydrated state. Equivalently, at a particular hydration, the presence of sugars lowers the transition temperature between the fluid and gel phases. There are two competing models for explaining the effects of sugars on membrane phase transition temperatures. One, designated the water replacement hypothesis (WRH) states that sugars hydrogen bond to phospholipid headgroups, thus hindering the fluid-gel phase transition. One version of this model suggests that certain sugars (such as trehalose) achieve the measured effects by inserting between the phospholipid head groups. An alternative model explains the observed effects of sugars in terms of the sugars effect on the hydration repulsion that develops between opposing membranes during dehydration. The hydration repulsion leads to a lateral compressive stress in the bilayer which squeezes adjacent lipids more closely together, resulting in a transition to the gel phase. When sugars are present, their osmotic and volumetric effects reduce the hydration repulsion, reduce the compressive stress in the membranes, and therefore tend to maintain the average lateral separation between lipids. This model is called the hydration forces explanation (HFE). We recently showed that neither mono- nor di

  13. Implementation and validation of a 1D fluid model for collapsible channels.

    Science.gov (United States)

    Anderson, Peter; Fels, Sidney; Green, Sheldon

    2013-11-01

    A 1D fluid model is implemented for the purpose of fluid-structure interaction (FSI) simulations in complex and completely collapsible geometries, particularly targeting the case of obstructive sleep apnea (OSA). The fluid mechanics are solved separately from any solid mechanics, making possible the use of a highly complex and/or black-box solver for the solid mechanics. The fluid model is temporally discretized with a second-order scheme and spatially discretized with an asymmetrical fourth-order scheme that is robust in highly uneven geometries. A completely collapsing and reopening geometry is handled smoothly using a modified area function. The numerical implementation is tested with two driven-geometry cases: (1) an inviscid analytical solution and (2) a completely closing geometry with viscous flow. Three-dimensional fluid simulations in static geometries are performed to examine the assumptions of the 1D model, and with a well-defined pressure-recovery constant the 1D model agrees well with 3D models. The model is very fast computationally, is robust, and is recommended for OSA simulations where the bulk flow pressure is primarily of interest.

  14. Modeling and Algorithmic Approaches to Constitutively-Complex, Micro-structured Fluids

    Energy Technology Data Exchange (ETDEWEB)

    Forest, Mark Gregory [University of North Carolina at Chapel Hill

    2014-05-06

    The team for this Project made significant progress on modeling and algorithmic approaches to hydrodynamics of fluids with complex microstructure. Our advances are broken down into modeling and algorithmic approaches. In experiments a driven magnetic bead in a complex fluid accelerates out of the Stokes regime and settles into another apparent linear response regime. The modeling explains the take-off as a deformation of entanglements, and the longtime behavior is a nonlinear, far-from-equilibrium property. Furthermore, the model has predictive value, as we can tune microstructural properties relative to the magnetic force applied to the bead to exhibit all possible behaviors. Wave-theoretic probes of complex fluids have been extended in two significant directions, to small volumes and the nonlinear regime. Heterogeneous stress and strain features that lie beyond experimental capability were studied. It was shown that nonlinear penetration of boundary stress in confined viscoelastic fluids is not monotone, indicating the possibility of interlacing layers of linear and nonlinear behavior, and thus layers of variable viscosity. Models, algorithms, and codes were developed and simulations performed leading to phase diagrams of nanorod dispersion hydrodynamics in parallel shear cells and confined cavities representative of film and membrane processing conditions. Hydrodynamic codes for polymeric fluids are extended to include coupling between microscopic and macroscopic models, and to the strongly nonlinear regime.

  15. Modeling the Fracturing of Rock by Fluid Injection - Comparison of Numerical and Experimental Results

    Science.gov (United States)

    Heinze, Thomas; Galvan, Boris; Miller, Stephen

    2013-04-01

    Fluid-rock interactions are mechanically fundamental to many earth processes, including fault zones and hydrothermal/volcanic systems, and to future green energy solutions such as enhanced geothermal systems and carbon capture and storage (CCS). Modeling these processes is challenging because of the strong coupling between rock fracture evolution and the consequent large changes in the hydraulic properties of the system. In this talk, we present results of a numerical model that includes poro-elastic plastic rheology (with hardening, softening, and damage), and coupled to a non-linear diffusion model for fluid pressure propagation and two-phase fluid flow. Our plane strain model is based on the poro- elastic plastic behavior of porous rock and is advanced with hardening, softening and damage using the Mohr- Coulomb failure criteria. The effective stress model of Biot (1944) is used for coupling the pore pressure and the rock behavior. Frictional hardening and cohesion softening are introduced following Vermeer and de Borst (1984) with the angle of internal friction and the cohesion as functions of the principal strain rates. The scalar damage coefficient is assumed to be a linear function of the hardening parameter. Fluid injection is modeled as a two phase mixture of water and air using the Richards equation. The theoretical model is solved using finite differences on a staggered grid. The model is benchmarked with experiments on the laboratory scale in which fluid is injected from below in a critically-stressed, dry sandstone (Stanchits et al. 2011). We simulate three experiments, a) the failure a dry specimen due to biaxial compressive loading, b) the propagation a of low pressure fluid front induced from the bottom in a critically stressed specimen, and c) the failure of a critically stressed specimen due to a high pressure fluid intrusion. Comparison of model results with the fluid injection experiments shows that the model captures most of the experimental

  16. Fully Coupled Fluid-Structure Interaction Model Based on Distributed Lagrange Multiplier/Fictitious Domain Method

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    This paper, with a finite element method, studies the interaction of a coupled incompressible fluid-rigid structure system with a free surface subjected to external wave excitations. With this fully coupled model, the rigid structure is taken as "fictitious" fluid with zero strain rate. Both fluid and structure are described by velocity and pressure. The whole domain, including fluid region and structure region, is modeled by the incompressible Navier-Stokes equations which are discretized with fixed Eulerian mesh. However, to keep the structure's rigid body shape and behavior, a rigid body constraint is enforced on the "fictitious" fluid domain by use of the Distributed Lagrange Multiplier/Fictitious Domain (DLM/FD) method which is originally introduced to solve particulate flow problems by Glowinski et al. For the verification of the model presented herein, a 2D numerical wave tank is established to simulate small amplitude wave propagations, and then numerical results are compared with analytical solutions. Finally, a 2D example of fluid-structure interaction under wave dynamic forces provides convincing evidences for the method excellent solution quality and fidelity.

  17. Fluid-solid interaction model for hydraulic reciprocating O-ring seals

    Science.gov (United States)

    Liao, Chuanjun; Huang, Weifeng; Wang, Yuming; Suo, Shuangfu; Liu, Ying

    2013-01-01

    Elastohydrodynamic lubrication characteristics of hydraulic reciprocating seals have significant effects on sealing and tribology performances of hydraulic actuators, especially in high parameter hydraulic systems. Only elastic deformations of hydraulic reciprocating seals were discussed, and hydrodynamic effects were neglected in many studies. The physical process of the fluid-solid interaction effect did not be clearly presented in the existing fluid-solid interaction models for hydraulic reciprocating O-ring seals, and few of these models had been simultaneously validated through experiments. By exploring the physical process of the fluid-solid interaction effect of the hydraulic reciprocating O-ring seal, a numerical fluid-solid interaction model consisting of fluid lubrication, contact mechanics, asperity contact and elastic deformation analyses is constructed with an iterative procedure. With the SRV friction and wear tester, the experiments are performed to investigate the elastohydrodynamic lubrication characteristics of the O-ring seal. The regularity of the friction coefficient varying with the speed of reciprocating motion is obtained in the mixed lubrication condition. The experimental result is used to validate the fluid-solid interaction model. Based on the model, The elastohydrodynamic lubrication characteristics of the hydraulic reciprocating O-ring seal are presented respectively in the dry friction, mixed lubrication and full film lubrication conditions, including of the contact pressure, film thickness, friction coefficient, liquid film pressure and viscous shear stress in the sealing zone. The proposed numerical fluid-solid interaction model can be effectively used to analyze the operation characteristics of the hydraulic reciprocating O-ring seal, and can also be widely used to study other hydraulic reciprocating seals.

  18. Bianchi Type-I bulk viscous fluid string dust magnetized cosmological model in general relativity

    Indian Academy of Sciences (India)

    Raj Bali; Anjali

    2004-09-01

    Bianchi Type-I magnetized bulk viscous fluid string dust cosmological model is investigated. To get a determinate model, we have assumed the conditions and = constant where is the shear, the expansion in the model and the coefficient of bulk viscosity. The behaviour of the model in the presence and absence of magnetic field together with physical and geometrical aspects of the model are also discussed.

  19. Modeling fluid- and trace element-fluxes in subducted slabs utilising two-dimensional thermodynamic and trace element models

    Science.gov (United States)

    Konrad-Schmolke, M.; Jahn, S.

    2012-12-01

    The subduction of oceanic lithosphere induces one of the major element cycles on Earth. Devolatilisation reactions in the subducted plate, the associated major and trace element transport as well as fluid-rock interaction within the slab and the mantle wedge control the flux of matter from the down-going plate into the upper plate and the atmosphere. Prediction and quantification of these fluxes is therefore a fundamental task in geosciences. The amount and composition of liberated fluids in a subducted slab is controlled by thermodynamic constraints, the fluid-rock element distribution as well as reaction kinetics in the affected rocks. Consequently, prediction of the element transfer within the slab and into the overlying rocks must consider these processes and their complex interactions. In this contribution we focus on the thermodynamic constraints on devolatilisation reactions in slab-crust and -mantle, the associated fluid migration and the chemical aspect of fluid-rock interaction within a hydrated subducted plate. Based on numerically modeled isotherm patterns of contrasting subduction settings we calculate phase relations in different layers of the subducted slabs. We use incremental Gibbs energy minimisation models and consider upward migration of liberated fluids during subduction. Moreover, modeled phase relations, fluid amounts and trace element partition coefficients, are used to calculate mass balanced distribution of fluid-mobile trace elements among the stable phases within the slab. Trace element transport occurs within the migrating fluid phase that equilibrates with the wall rock during ascent. This process controls element depletion and/or enrichment of fluid and wall rock and enables detailed prediction of the trace element transfer along the slab mantle interface. Our results show that fluid fluxes at the slab surface are clearly bimodal: at fore-arc depths water is continuously released predominantly from the MORB layer whereas at sub- and

  20. On The Equivalence of Local and Global Area-constraint Formulations for Lipid Bilayer Vesicles

    CERN Document Server

    Dharmavaram, Sanjay

    2014-01-01

    Lipid bilayer membranes are commonly modeled as area-preserving fluid surfaces that resist bending. There appear to be two schools of thought in the literature concerning the actual area constraint. In some works the total or global area (GA) of the vesicle is a prescribed constant, while in others the local area ratio is assigned to unity. In this work we demonstrate the equivalence of these ostensibly distinct approaches in the specific case when the equilibrium configuration is a smooth, closed surface of genus zero. We accomplish this in the context of the Euler-Lagrange equilibrium equations, constraint equations and the second-variation with admissibility conditions, for a broad class of models - including the phase-field type.

  1. Fluid Survival Tool: A Model Checker for Hybrid Petri Nets

    NARCIS (Netherlands)

    Postema, Björn; Remke, Anne; Haverkort, Boudewijn R.; Ghasemieh, Hamed

    2014-01-01

    Recently, algorithms for model checking Stochastic Time Logic (STL) on Hybrid Petri nets with a single general one-shot transition (HPNG) have been introduced. This paper presents a tool for model checking HPNG models against STL formulas. A graphical user interface (GUI) not only helps to demonstra

  2. Brownian dynamics simulations of lipid bilayer membrane with hydrodynamic interactions in LAMMPS

    Science.gov (United States)

    Fu, Szu-Pei; Young, Yuan-Nan; Peng, Zhangli; Yuan, Hongyan

    2016-11-01

    Lipid bilayer membranes have been extensively studied by coarse-grained molecular dynamics simulations. Numerical efficiencies have been reported in the cases of aggressive coarse-graining, where several lipids are coarse-grained into a particle of size 4 6 nm so that there is only one particle in the thickness direction. Yuan et al. proposed a pair-potential between these one-particle-thick coarse-grained lipid particles to capture the mechanical properties of a lipid bilayer membrane (such as gel-fluid-gas phase transitions of lipids, diffusion, and bending rigidity). In this work we implement such interaction potential in LAMMPS to simulate large-scale lipid systems such as vesicles and red blood cells (RBCs). We also consider the effect of cytoskeleton on the lipid membrane dynamics as a model for red blood cell (RBC) dynamics, and incorporate coarse-grained water molecules to account for hydrodynamic interactions. The interaction between the coarse-grained water molecules (explicit solvent molecules) is modeled as a Lennard-Jones (L-J) potential. We focus on two sets of LAMMPS simulations: 1. Vesicle shape transitions with varying enclosed volume; 2. RBC shape transitions with different enclosed volume. This work is funded by NSF under Grant DMS-1222550.

  3. Structure and phase transformations of DPPC lipid bilayers in the presence of nanoparticles: insights from coarse-grained molecular dynamics simulations.

    Science.gov (United States)

    Prates Ramalho, J P; Gkeka, P; Sarkisov, L

    2011-04-05

    In this article, we investigate fluid-gel transformations of a DPPC lipid bilayer in the presence of nanoparticles, using coarse-grained molecular dynamics. Two types of nanoparticles are considered, specifically a 3 nm hydrophobic nanoparticle located in the core of the bilayer and a 6 nm charged nanoparticle located at the interface between the bilayer and water phase. Both negatively and positively charged nanoparticles at the bilayer interface are investigated. We demonstrate that the presence of all types of nanoparticles induces disorder effects in the structure of the lipid bilayer. These effects are characterized using computer visualization of the gel phase in the presence of nanoparticles, radial distribution functions, and order parameters. The 3 nm hydrophobic nanoparticle immersed in the bilayer core and the positively charged nanoparticle at the bilayer surface have no effect on the temperature of the fluid-gel transformation, compared to the bulk case. Interestingly, a negatively charged hydrophobic nanoparticle located at the surface of the bilayer causes slight shift of the fluid-gel transformation to a lower temperature, compared to the bulk bilayer case.

  4. A model for fluid-injection-induced seismicity at the KTB, Germany

    Science.gov (United States)

    Baisch, S.; Harjes, H.-P.

    2003-01-01

    The 9.1 km deep KTB (Kontinentale Tiefbohrung, Germany) drilling hole is one of the best investigated deep-drilling sites in the world. Among other parameters, in situ measurements revealed continuous profiles of principal stresses, pore fluid pressure and fracture geometry in the vicinity of the borehole. The present study combines these parameters with hydraulic and seismicity data obtained during fluid-injection experiments conducted at the KTB to derive a conceptual model for fluid-injection-induced seismicity at the KTB. This model rests on the well constrained assumptions that (1) the crust is highly fractured with a permeable fracture network between 9 km depth and the Earth's surface and (2) the crust is in near-failure equilibrium, whereby a large number of fracture planes are under near-critical condition. During the injection experiment, the elevated pore fluid pressure remained well below the least principal stress and thus was too small to cause hydraulic opening of existing fractures. Consequently, the geometry of the fracture network was assumed to have not changed during fluid injection with induced seismicity occurring solely as a result of lowering of the effective normal stress, consistent with observed source mechanisms. The key parameter in the present model is the fracture permeability, which exhibits large spatial and directional variations. These variations are proposed to primarily control fluid migration paths and associated propagation of elevated fluid pressure during fluid injection. In contrast with common models based on isotropic fluid diffusion or spatially averaged permeability, highly permeable branches of the fracture network strongly affect the propagation of fluid pressure and prohibit the concept of a smooth `pressure front'. We find evidence that major fluid flow exists at comparatively low fluid pressure (below the critical pressure required to cause seismic failure) without being detected seismically. This might also

  5. Magnetic properties of a doped graphene-like bilayer

    Energy Technology Data Exchange (ETDEWEB)

    Guo, An-Bang [School of Science, Shenyang University of Technology, Shenyang 110870 (China); Jiang, Wei, E-mail: weijiang.sut.edu@gmail.com [School of Science, Shenyang University of Technology, Shenyang 110870 (China); Zhang, Na [Shenyang Normal University, Shenyang 110034 (China)

    2017-05-15

    A doped graphene-like bilayer is described using a four-sublattice Heisenberg model both ferromagnetic and antiferrimagnetic couplings. The magnetic properties of the bilayer system are studied using the Heisenberg model, retarded Green's function and the linear spin-wave approximation. The spin-wave spectra, energy gap, and the magnetization and quantum fluctuation of the system at the ground state are calculated with various intra- and interlayer couplings. The results indicate that the effect of antiferromagnetic exchange coupling on the magnetic properties of the system is significant. Magnetizations at low temperature show intersection points due to the quantum effects.

  6. Numerical modeling of fracking fluid migration through fault zones and fractures in the North German Basin

    Science.gov (United States)

    Pfunt, Helena; Houben, Georg; Himmelsbach, Thomas

    2016-09-01

    Gas production from shale formations by hydraulic fracturing has raised concerns about the effects on the quality of fresh groundwater. The migration of injected fracking fluids towards the surface was investigated in the North German Basin, based on the known standard lithology. This included cases with natural preferential pathways such as permeable fault zones and fracture networks. Conservative assumptions were applied in the simulation of flow and mass transport triggered by a high pressure boundary of up to 50 MPa excess pressure. The results show no significant fluid migration for a case with undisturbed cap rocks and a maximum of 41 m vertical transport within a permeable fault zone during the pressurization. Open fractures, if present, strongly control the flow field and migration; here vertical transport of fracking fluids reaches up to 200 m during hydraulic fracturing simulation. Long-term transport of the injected water was simulated for 300 years. The fracking fluid rises vertically within the fault zone up to 485 m due to buoyancy. Progressively, it is transported horizontally into sandstone layers, following the natural groundwater flow direction. In the long-term, the injected fluids are diluted to minor concentrations. Despite the presence of permeable pathways, the injected fracking fluids in the reported model did not reach near-surface aquifers, either during the hydraulic fracturing or in the long term. Therefore, the probability of impacts on shallow groundwater by the rise of fracking fluids from a deep shale-gas formation through the geological underground to the surface is small.

  7. Collisional transport across the magnetic field in drift-fluid models

    DEFF Research Database (Denmark)

    Madsen, Jens; Naulin, Volker; Nielsen, Anders Henry;

    2016-01-01

    Drift ordered fluid models are widely applied in studies of low-frequency turbulence in the edge and scrape-off layer regions of magnetically confined plasmas. Here, we show how collisional transport across the magnetic field is self-consistently incorporated into drift-fluid models without...... simulations. We further derive a computationally efficient, two-dimensional model, which can be time integrated for several turbulence de-correlation times using only limited computational resources. The model describes interchange turbulence in a two-dimensional plane perpendicular to the magnetic field...... located at the outboard midplane of a tokamak. The model domain has two regions modeling open and closed field lines. The model employs a computational expedient model for collisional transport. Numerical simulations show good agreement between the full and the simplified model for collisional transport....

  8. The effect of temperature on supported dipalmitoylphosphatidylcholine (DPPC) bilayers: structure and lubrication performance.

    Science.gov (United States)

    Wang, Min; Zander, Thomas; Liu, Xiaoyan; Liu, Chao; Raj, Akanksha; Wieland, D C Florian; Garamus, Vasil M; Willumeit-Römer, Regine; Claesson, Per Martin; Dėdinaitė, Andra

    2015-05-01

    Phospholipids fulfill an important role in joint lubrication. They, together with hyaluronan and glycoproteins, are the biolubricants that sustain low friction between cartilage surfaces bathed in synovial fluid. In this work we have investigated how the friction force and load bearing capacity of 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) bilayers on silica surfaces are affected by temperature, covering the temperature range 25-52°C. Friction forces have been determined utilizing the AFM colloidal probe technique, which showed that DPPC bilayers are able to provide low friction forces over the whole temperature interval. However, the load bearing capacity is improved at higher temperatures. We interpret this finding as being a consequence of lower rigidity and higher self-healing capacity of the DPPC bilayer in the liquid disordered state compared to the gel state. The corresponding structure of solid supported DPPC bilayers at the silica-liquid interface has been followed using X-ray reflectivity measurements, which suggests that the DPPC bilayer is in the gel phase at 25°C and 39°C and in the liquid disordered state at 55°C. Well-defined bilayer structures were observed for both phases. The deposited DPPC bilayers were also imaged using AFM PeakForce Tapping mode, and these measurements indicated a less homogeneous layer at temperatures below 37°C.

  9. A minimal coupled fluid-discrete element model for bedload transport

    CERN Document Server

    Maurin, Raphael; Chareyre, Bruno; Frey, Philippe

    2016-01-01

    A minimal Lagragian two-phase model to study turbulent bedload transport focusing on the granular phase is presented, and validated with experiments. The model intends to describe bedload transport of massive particles in fully rough flows at relatively low Shields numbers, for which no suspension occurs. A discrete element method for the granular phase is coupled with a one dimensional volume-averaged two-phase momentum equation for the fluid phase. The coupling between the discrete granular phase and the continuous fluid phase is discussed, and a consistent averaging formulation adapted to bedload transport is introduced. An original simple discrete random walk model is proposed to account for the fluid velocity fluctuations. The model is compared with experiments considering both classical sediment transport rate as a function of the Shields number, and depth profiles of solid velocity, volume fraction, and transport rate density, from existing bedload transport experiments in inclined flume. The results s...

  10. Modeling Two-Phase Flow and Vapor Cycles Using the Generalized Fluid System Simulation Program

    Science.gov (United States)

    Smith, Amanda D.; Majumdar, Alok K.

    2017-01-01

    This work presents three new applications for the general purpose fluid network solver code GFSSP developed at NASA's Marshall Space Flight Center: (1) cooling tower, (2) vapor-compression refrigeration system, and (3) vapor-expansion power generation system. These systems are widely used across engineering disciplines in a variety of energy systems, and these models expand the capabilities and the use of GFSSP to include fluids and features that are not part of its present set of provided examples. GFSSP provides pressure, temperature, and species concentrations at designated locations, or nodes, within a fluid network based on a finite volume formulation of thermodynamics and conservation laws. This paper describes the theoretical basis for the construction of the models, their implementation in the current GFSSP modeling system, and a brief evaluation of the usefulness of the model results, as well as their applicability toward a broader spectrum of analytical problems in both university teaching and engineering research.

  11. Management of fluid mud in estuaries, bays, and lakes. II: Measurement, modeling, and management

    Science.gov (United States)

    McAnally, W.H.; Teeter, A.; Schoellhamer, D.; Friedrichs, C.; Hamilton, D.; Hayter, E.; Shrestha, P.; Rodriguez, H.; Sheremet, A.; Kirby, R.

    2007-01-01

    Techniques for measurement, modeling, and management of fluid mud are available, but research is needed to improve them. Fluid mud can be difficult to detect, measure, or sample, which has led to new instruments and new ways of using existing instruments. Multifrequency acoustic fathometers sense neither density nor viscosity and are, therefore, unreliable in measuring fluid mud. Nuclear density probes, towed sleds, seismic, and drop probes equipped with density meters offer the potential for accurate measurements. Numerical modeling of fluid mud requires solving governing equations for flow velocity, density, pressure, salinity, water surface, plus sediment submodels. A number of such models exist in one-, two-, and three-dimensional form, but they rely on empirical relationships that require substantial site-specific validation to observations. Management of fluid mud techniques can be classified as those that accomplish: Source control, formation control, and removal. Nautical depth, a fourth category, defines the channel bottom as a specific fluid mud density or alternative parameter as safe for navigation. Source control includes watershed management measures to keep fine sediment out of waterways and in-water measures such as structures and traps. Formation control methods include streamlined channels and structures plus other measures to reduce flocculation and structures that train currents. Removal methods include the traditional dredging and transport of dredged material plus agitation that contributes to formation control and/or nautical depth. Conditioning of fluid mud by dredging and aerating offers the possibility of improved navigability. Two examples-the Atchafalaya Bar Channel and Savannah Harbor-illustrate the use of measurements and management of fluid mud. ?? 2007 ASCE.

  12. Numerical aspects of modelling of coupled chemical reactions and fluid flow in sedimentary basins

    Energy Technology Data Exchange (ETDEWEB)

    Holstad, Astrid

    1998-01-01

    Simulation of coupled chemical reactions and fluid flow in porous sedimentary basins, through long time periods, is a numerical challenge. In most models available today the equations representing such a physical problem are solved as PDEs (Partial Differential Equation) where efficient time-stepping with controlled error is very difficult. The DAE (Differential Algebraic Equation) system approach is used where robust adaptive time-stepping algorithms are available in solvers. In this report mathematical and numerical models are derived for coupled chemical reactions and fluid flow. The models have several interesting properties which are discussed. The performance of code is tested. 20 refs., 6 figs., 2 tabs.

  13. Bianchi Type-Ⅰ Massive String Magnetized Barotropic Perfect Fluid Cosmological Model in General Relativity

    Institute of Scientific and Technical Information of China (English)

    BALI Raj; PAREEK Umesh Kumar; PRADHAN Anirudh

    2007-01-01

    @@ Bianchi type-Ⅰ massive string cosmological model with magnetic field of barotropic perfect fluid distribution through the techniques used by Latelier and Stachel is investigated. To obtain the deterministic model of the universe, it is assumed that the universe is filled with barotropic perfect fluid distribution. The magnetic field is due to electric current produced along the x-axis with infinite electrical condúctivity. The behaviour of the model in the presence and absence of magnetic field together with other physical aspects is further discussed.

  14. A CFD Model for Fluid Dynamics in a Gas-fluidised Bed

    Institute of Scientific and Technical Information of China (English)

    ZHANG Kai; Stefano Brandani

    2004-01-01

    A modified particle bed model derived from the two-fluid momentum balance equations was employed to predict the gas-fluidised bed behaviour. Additional terms are included in both the fluid and the particle momentum balance equations to take into account the effect of the dispersed solid phase. This model has been extended to two-dimensional formulations and has been implemented in the commercial code CFX 4.3. The model correctly simulates the homogeneous fluidisation of Geldart Group A and the bubbling fluidisation of Geldart Group B in gas-solid fluidised beds.

  15. Advanced fluid modeling and PIC/MCC simulations of low-pressure ccrf discharges

    Science.gov (United States)

    Becker, M. M.; Kählert, H.; Sun, A.; Bonitz, M.; Loffhagen, D.

    2017-04-01

    Comparative studies of capacitively coupled radio-frequency discharges in helium and argon at pressures between 10 and 80 Pa are presented applying two different fluid modeling approaches as well as two independently developed particle-in-cell/Monte Carlo collision (PIC/MCC) codes. The focus is on the analysis of the range of applicability of a recently proposed fluid model including an improved drift-diffusion approximation for the electron component as well as its comparison with fluid modeling results using the classical drift-diffusion approximation and benchmark results obtained by PIC/MCC simulations. Main features of this time- and space-dependent fluid model are given. It is found that the novel approach shows generally quite good agreement with the macroscopic properties derived by the kinetic simulations and is largely able to characterize qualitatively and quantitatively the discharge behavior even at conditions when the classical fluid modeling approach fails. Furthermore, the excellent agreement between the two PIC/MCC simulation codes using the velocity Verlet method for the integration of the equations of motion verifies their accuracy and applicability.

  16. Micro-poromechanics model of fluid-saturated chemically active fibrous media.

    Science.gov (United States)

    Misra, Anil; Parthasarathy, Ranganathan; Singh, Viraj; Spencer, Paulette

    2015-02-01

    We have developed a micromechanics based model for chemically active saturated fibrous media that incorporates fiber network microstructure, chemical potential driven fluid flow, and micro-poromechanics. The stress-strain relationship of the dry fibrous media is first obtained by considering the fiber behavior. The constitutive relationships applicable to saturated media are then derived in the poromechanics framework using Hill's volume averaging. The advantage of this approach is that the resultant continuum model accounts for the discrete nature of the individual fibers while retaining a form suitable for porous materials. As a result, the model is able to predict the influence of micro-scale phenomena, such as the fiber pre-strain caused by osmotic effects and evolution of fiber network structure with loading, on the overall behavior and in particular, on the poromechanics parameters. Additionally, the model can describe fluid-flow related rate-dependent behavior under confined and unconfined conditions and varying chemical environments. The significance of the approach is demonstrated by simulating unconfined drained monotonic uniaxial compression under different surrounding fluid bath molarity, and fluid-flow related creep and relaxation at different loading-levels and different surrounding fluid bath molarity. The model predictions conform to the experimental observations for saturated soft fibrous materials. The method can potentially be extended to other porous materials such as bone, clays, foams and concrete.

  17. Particle-based simulations of bilayer membranes: self-assembly, structural analysis, and shock-wave damage

    Science.gov (United States)

    Steinhauser, Martin O.; Schindler, Tanja

    2016-08-01

    We report on the results of particle-based, coarse-grained molecular dynamics simulations of amphiphilic lipid molecules in aqueous environment where the membrane structures at equilibrium are subsequently exposed to strong shock waves, and their damage is analyzed. The lipid molecules self-assemble from unbiased random initial configurations to form stable bilayer membranes, including closed vesicles. During self-assembly of lipid molecules, we observe several stages of clustering, starting with many small clusters of lipids, gradually merging together to finally form one single bilayer membrane. We find that the clustering of lipids sensitively depends on the hydrophobic interaction h_c of the lipid tails in our model and on temperature T of the system. The self-assembled bilayer membranes are quantitatively analyzed at equilibrium with respect to their degree of order and their local structure. We also show that—by analyzing the membrane fluctuations and using a linearized theory— we obtain area compression moduli K_A and bending stiffnesses κ_B for our bilayer membranes which are within the experimental range of in vivo and in vitro measurements of biological membranes. We also discuss the density profile and the pair correlation function of our model membranes at equilibrium which has not been done in previous studies of particle-based membrane models. Furthermore, we present a detailed phase diagram of our lipid model that exhibits a sol-gel transition between quasi-solid and fluid domains, and domains where no self-assembly of lipids occurs. In addition, we present in the phase diagram the conditions for temperature T and hydrophobicity h_c of the lipid tails of our model to form closed vesicles. The stable bilayer membranes obtained at equilibrium are then subjected to strong shock waves in a shock tube setup, and we investigate the damage in the membranes due to their interaction with shock waves. Here, we find a transition from self

  18. Particle-based simulations of bilayer membranes: self-assembly, structural analysis, and shock-wave damage

    Science.gov (United States)

    Steinhauser, Martin O.; Schindler, Tanja

    2017-01-01

    We report on the results of particle-based, coarse-grained molecular dynamics simulations of amphiphilic lipid molecules in aqueous environment where the membrane structures at equilibrium are subsequently exposed to strong shock waves, and their damage is analyzed. The lipid molecules self-assemble from unbiased random initial configurations to form stable bilayer membranes, including closed vesicles. During self-assembly of lipid molecules, we observe several stages of clustering, starting with many small clusters of lipids, gradually merging together to finally form one single bilayer membrane. We find that the clustering of lipids sensitively depends on the hydrophobic interaction h_c of the lipid tails in our model and on temperature T of the system. The self-assembled bilayer membranes are quantitatively analyzed at equilibrium with respect to their degree of order and their local structure. We also show that—by analyzing the membrane fluctuations and using a linearized theory— we obtain area compression moduli K_A and bending stiffnesses κ _B for our bilayer membranes which are within the experimental range of in vivo and in vitro measurements of biological membranes. We also discuss the density profile and the pair correlation function of our model membranes at equilibrium which has not been done in previous studies of particle-based membrane models. Furthermore, we present a detailed phase diagram of our lipid model that exhibits a sol-gel transition between quasi-solid and fluid domains, and domains where no self-assembly of lipids occurs. In addition, we present in the phase diagram the conditions for temperature T and hydrophobicity h_c of the lipid tails of our model to form closed vesicles. The stable bilayer membranes obtained at equilibrium are then subjected to strong shock waves in a shock tube setup, and we investigate the damage in the membranes due to their interaction with shock waves. Here, we find a transition from self

  19. Optimal design of a new multipole bilayer magnetorheological brake

    Science.gov (United States)

    Shiao, Yaojung; Ngoc, Nguyen Anh; Lai, Chien-Hung

    2016-11-01

    This article presents a new high-torque multipole bilayer magneto-rheological brake (MRB). This MRB has a unique structural design with multiple electromagnetic poles and multiple media layers of magnetorheological fluid (MRF). The MRB has two rotors located on the outer and inner sides of a six-pole stator, and therefore, it can provide higher torque and a larger torque-to-volume ratio (TVR) than conventional single- or multipole single-layer MRBs can. Moreover, the problem of potential MRF leakage is solved by using cylindrical separator rings around the stator. In this study, first, the structure of the proposed MRB is introduced. An analog magnetic circuit was built for the MRB to investigate the effects of the MRB parameters on the magnetic field intensity of the MRF layers. In addition, a 3D electromagnetic model of the MRB was developed to simulate and examine the magnetic flux intensity and corresponding braking torque. An approximate optimization method was then applied to obtain the optimal geometric dimensions for the major dimensional parameters of the MRB. The MRB was manufactured and tested to validate its torque and dynamic characteristics. The results showed that the proposed MRB exhibited great enhancement of the braking torque and TVR.

  20. A two-phase solid/fluid model for dense granular flows including dilatancy effects

    Science.gov (United States)

    Mangeney, Anne; Bouchut, Francois; Fernandez-Nieto, Enrique; Koné, El-Hadj; Narbona-Reina, Gladys

    2016-04-01

    Describing grain/fluid interaction in debris flows models is still an open and challenging issue with key impact on hazard assessment [{Iverson et al.}, 2010]. We present here a two-phase two-thin-layer model for fluidized debris flows that takes into account dilatancy effects. It describes the velocity of both the solid and the fluid phases, the compression/dilatation of the granular media and its interaction with the pore fluid pressure [{Bouchut et al.}, 2016]. The model is derived from a 3D two-phase model proposed by {Jackson} [2000] based on the 4 equations of mass and momentum conservation within the two phases. This system has 5 unknowns: the solid and fluid velocities, the solid and fluid pressures and the solid volume fraction. As a result, an additional equation inside the mixture is necessary to close the system. Surprisingly, this issue is inadequately accounted for in the models that have been developed on the basis of Jackson's work [{Bouchut et al.}, 2015]. In particular, {Pitman and Le} [2005] replaced this closure simply by imposing an extra boundary condition at the surface of the flow. When making a shallow expansion, this condition can be considered as a closure condition. However, the corresponding model cannot account for a dissipative energy balance. We propose here an approach to correctly deal with the thermodynamics of Jackson's model by closing the mixture equations by a weak compressibility relation following {Roux and Radjai} [1998]. This relation implies that the occurrence of dilation or contraction of the granular material in the model depends on whether the solid volume fraction is respectively higher or lower than a critical value. When dilation occurs, the fluid is sucked into the granular material, the pore pressure decreases and the friction force on the granular phase increases. On the contrary, in the case of contraction, the fluid is expelled from the mixture, the pore pressure increases and the friction force diminishes. To