First Report of Orange Rust of Sugarcane caused by Puccinia kuehnii in Ecuador

Science.gov (United States)

Orange rust, Puccinia kuehnii (W. Krüger) E.J. Butler, is an important disease of sugarcane (complex hybrid of Saccharum L. species) that causes yield losses, and impacts breeding programs. Initially confined to the Asia-Oceania region (5), P. kuehnii was reported in Florida in June 2007 (2) and lat...

A Programmatic View of Metadata, Metadata Services, and Metadata Flow in ATLAS

CERN Multimedia

CERN. Geneva

2012-01-01

The volume and diversity of metadata in an experiment of the size and scope of ATLAS is considerable. Even the definition of metadata may seem context-dependent: data that are primary for one purpose may be metadata for another. Trigger information and data from the Large Hadron Collider itself provide cases in point, but examples abound. Metadata about logical or physics constructs, such as data-taking periods and runs and luminosity blocks and events and algorithms, often need to be mapped to deployment and production constructs, such as datasets and jobs and files and software versions, and vice versa. Metadata at one level of granularity may have implications at another. ATLAS metadata services must integrate and federate information from inhomogeneous sources and repositories, map metadata about logical or physics constructs to deployment and production constructs, provide a means to associate metadata at one level of granularity with processing or decision-making at another, offer a coherent and ...

Source apportionment of atmospheric polycyclic aromatic hydrocarbons (PAHs) in Palm Beach County, Florida.

Science.gov (United States)

Afshar-Mohajer, Nima; Wilson, Christina; Wu, Chang-Yu; Stormer, James E

2016-04-01

Due to concerns about adverse health effects associated with inhalation of atmospheric polycyclic aromatic hydrocarbons (PAHs), 30 ambient air samples were obtained at an air quality monitoring station in Palm Beach County, Florida, from March 2013 to March 2014. The ambient PAH concentration measurements and fractional emission rates of known sources were incorporated into a chemical mass balance model, CMB8.2, developed by EPA, to apportion contributions of three major PAH sources including preharvest sugarcane burning, mobile vehicles, and wildland fires. Strong association between the number of benzene rings and source contribution was found, and mobile vehicles were identified to be the prevailing source (contribution≥56%) for the observed PAHs concentration with lower molecular weights (four or fewer benzene rings) throughout the year. Preharvest sugarcane burning was the primary contributing source for PAHs with relatively higher molecular weights (five or more benzene rings) during the sugarcane burning season (from October to May of the next year). Source contribution of wildland fires varied among PAH compounds but was consistently lower than for sugarcane burning during the sugarcane harvest season. Determining the major sources responsible for ground-level PAHs serves as a tool to improving management strategies for PAH emitting sources and a step toward better protection of the health of residents in terms of exposure to PAHs. The results obtain insight into temporal dominance of PAH polluting sources for those residential areas located near sugarcane burning facilities and have implications beyond Palm Beach County, in areas with high concerns of PAHs and their linked sources. Source apportionment of atmospheric polycyclic hydrocarbons (PAHs) in Palm Beach County, Florida, meant to estimate contributions of major sources in PAH concentrations measured at Belle Glade City of Palm Beach County. Number of benzene rings was found to be the key parameter

Metadata

CERN Document Server

Pomerantz, Jeffrey

2015-01-01

When "metadata" became breaking news, appearing in stories about surveillance by the National Security Agency, many members of the public encountered this once-obscure term from information science for the first time. Should people be reassured that the NSA was "only" collecting metadata about phone calls -- information about the caller, the recipient, the time, the duration, the location -- and not recordings of the conversations themselves? Or does phone call metadata reveal more than it seems? In this book, Jeffrey Pomerantz offers an accessible and concise introduction to metadata. In the era of ubiquitous computing, metadata has become infrastructural, like the electrical grid or the highway system. We interact with it or generate it every day. It is not, Pomerantz tell us, just "data about data." It is a means by which the complexity of an object is represented in a simpler form. For example, the title, the author, and the cover art are metadata about a book. When metadata does its job well, it fades i...

Log-Less Metadata Management on Metadata Server for Parallel File Systems

Directory of Open Access Journals (Sweden)

Jianwei Liao

2014-01-01

Full Text Available This paper presents a novel metadata management mechanism on the metadata server (MDS for parallel and distributed file systems. In this technique, the client file system backs up the sent metadata requests, which have been handled by the metadata server, so that the MDS does not need to log metadata changes to nonvolatile storage for achieving highly available metadata service, as well as better performance improvement in metadata processing. As the client file system backs up certain sent metadata requests in its memory, the overhead for handling these backup requests is much smaller than that brought by the metadata server, while it adopts logging or journaling to yield highly available metadata service. The experimental results show that this newly proposed mechanism can significantly improve the speed of metadata processing and render a better I/O data throughput, in contrast to conventional metadata management schemes, that is, logging or journaling on MDS. Besides, a complete metadata recovery can be achieved by replaying the backup logs cached by all involved clients, when the metadata server has crashed or gone into nonoperational state exceptionally.

Creating preservation metadata from XML-metadata profiles

Science.gov (United States)

Ulbricht, Damian; Bertelmann, Roland; Gebauer, Petra; Hasler, Tim; Klump, Jens; Kirchner, Ingo; Peters-Kottig, Wolfgang; Mettig, Nora; Rusch, Beate

2014-05-01

Registration of dataset DOIs at DataCite makes research data citable and comes with the obligation to keep data accessible in the future. In addition, many universities and research institutions measure data that is unique and not repeatable like the data produced by an observational network and they want to keep these data for future generations. In consequence, such data should be ingested in preservation systems, that automatically care for file format changes. Open source preservation software that is developed along the definitions of the ISO OAIS reference model is available but during ingest of data and metadata there are still problems to be solved. File format validation is difficult, because format validators are not only remarkably slow - due to variety in file formats different validators return conflicting identification profiles for identical data. These conflicts are hard to resolve. Preservation systems have a deficit in the support of custom metadata. Furthermore, data producers are sometimes not aware that quality metadata is a key issue for the re-use of data. In the project EWIG an university institute and a research institute work together with Zuse-Institute Berlin, that is acting as an infrastructure facility, to generate exemplary workflows for research data into OAIS compliant archives with emphasis on the geosciences. The Institute for Meteorology provides timeseries data from an urban monitoring network whereas GFZ Potsdam delivers file based data from research projects. To identify problems in existing preservation workflows the technical work is complemented by interviews with data practitioners. Policies for handling data and metadata are developed. Furthermore, university teaching material is created to raise the future scientists awareness of research data management. As a testbed for ingest workflows the digital preservation system Archivematica [1] is used. During the ingest process metadata is generated that is compliant to the

Metadata Dictionary Database: A Proposed Tool for Academic Library Metadata Management

Science.gov (United States)

Southwick, Silvia B.; Lampert, Cory

2011-01-01

This article proposes a metadata dictionary (MDD) be used as a tool for metadata management. The MDD is a repository of critical data necessary for managing metadata to create "shareable" digital collections. An operational definition of metadata management is provided. The authors explore activities involved in metadata management in…

Sugarcane-Biorefinery.

Science.gov (United States)

Vaz, Sílvio

2017-03-17

Concepts such as biorefinery and green chemistry focus on the usage of biomass, as with the oil value chain. However, it can cause less negative impact on the environment. A biorefinery based on sugarcane (Saccharum spp.) as feedstock is an example, because it can integrate into the same physical space, of processes for obtaining biofuels (ethanol), chemicals (from sugars or ethanol), electricity, and heat.The use of sugarcane as feedstock for biorefineries is dictated by its potential to supply sugars, ethanol, natural polymers or macromolecules, organic matter, and other compounds and materials. By means of conversion processes (chemical, biochemical, and thermochemical), sugarcane biomass can be transformed into high-value bioproducts to replace petrochemicals, as a bioeconomy model.

THE NEW ONLINE METADATA EDITOR FOR GENERATING STRUCTURED METADATA

Energy Technology Data Exchange (ETDEWEB)

Devarakonda, Ranjeet [ORNL; Shrestha, Biva [ORNL; Palanisamy, Giri [ORNL; Hook, Leslie A [ORNL; Killeffer, Terri S [ORNL; Boden, Thomas A [ORNL; Cook, Robert B [ORNL; Zolly, Lisa [United States Geological Service (USGS); Hutchison, Viv [United States Geological Service (USGS); Frame, Mike [United States Geological Service (USGS); Cialella, Alice [Brookhaven National Laboratory (BNL); Lazer, Kathy [Brookhaven National Laboratory (BNL)

2014-01-01

Nobody is better suited to describe data than the scientist who created it. This description about a data is called Metadata. In general terms, Metadata represents the who, what, when, where, why and how of the dataset [1]. eXtensible Markup Language (XML) is the preferred output format for metadata, as it makes it portable and, more importantly, suitable for system discoverability. The newly developed ORNL Metadata Editor (OME) is a Web-based tool that allows users to create and maintain XML files containing key information, or metadata, about the research. Metadata include information about the specific projects, parameters, time periods, and locations associated with the data. Such information helps put the research findings in context. In addition, the metadata produced using OME will allow other researchers to find these data via Metadata clearinghouses like Mercury [2][4]. OME is part of ORNL s Mercury software fleet [2][3]. It was jointly developed to support projects funded by the United States Geological Survey (USGS), U.S. Department of Energy (DOE), National Aeronautics and Space Administration (NASA) and National Oceanic and Atmospheric Administration (NOAA). OME s architecture provides a customizable interface to support project-specific requirements. Using this new architecture, the ORNL team developed OME instances for USGS s Core Science Analytics, Synthesis, and Libraries (CSAS&L), DOE s Next Generation Ecosystem Experiments (NGEE) and Atmospheric Radiation Measurement (ARM) Program, and the international Surface Ocean Carbon Dioxide ATlas (SOCAT). Researchers simply use the ORNL Metadata Editor to enter relevant metadata into a Web-based form. From the information on the form, the Metadata Editor can create an XML file on the server that the editor is installed or to the user s personal computer. Researchers can also use the ORNL Metadata Editor to modify existing XML metadata files. As an example, an NGEE Arctic scientist use OME to register

Determination of flavonoids in cultivated sugarcane leaves, bagasse, juice and in transgenic sugarcane by liquid chromatography-UV detection.

Science.gov (United States)

Colombo, Renata; Lanças, Fernando M; Yariwake, Janete H

2006-01-20

A high-performance liquid chromatography (HPLC) method with photo-diode array (DAD) detection was developed to separate and quantify flavonoids in sugarcane leaves and bagasse (= the crushed sugarcane refuse from juice extraction), and in sugarcane juice. Sugarcane flavonoids consist of a complex mixture of aglycones and glycosides (including flavonolignan glycosides), and the HPLC-UV method herein proposed is suitable for their quantification as total flavonoids. This method was applied to analyze samples of cultivated sugarcane, commercial juice and transgenic sugarcane leaves. Sugarcane leaves proved a promising source of flavonoids: an average of 1.10 mg of total flavonoids/g plant material was found in fresh leaves. Moreover, the flavonoid content of sugarcane juice (0.6 mg/mL) is comparable to other food sources of flavonoids previously reported. Transgenic sugarcane leaves ("Bowman-Birk" and "Kunitz") were compared with non-modified ("control") plant samples using the proposed HPLC-UV method, which indicated that the content of total flavonoids in transgenic plants is different from that in non-modified sugarcane.

Evolution in Metadata Quality: Common Metadata Repository's Role in NASA Curation Efforts

Science.gov (United States)

Gilman, Jason; Shum, Dana; Baynes, Katie

2016-01-01

Metadata Quality is one of the chief drivers of discovery and use of NASA EOSDIS (Earth Observing System Data and Information System) data. Issues with metadata such as lack of completeness, inconsistency, and use of legacy terms directly hinder data use. As the central metadata repository for NASA Earth Science data, the Common Metadata Repository (CMR) has a responsibility to its users to ensure the quality of CMR search results. This poster covers how we use humanizers, a technique for dealing with the symptoms of metadata issues, as well as our plans for future metadata validation enhancements. The CMR currently indexes 35K collections and 300M granules.

Variation in growth, physiology, and yield of six sugarcane cultivars from across the globe in Florida

Science.gov (United States)

Evaluation of sugarcane cultivars with diverse genetic background under similar location can help in better understanding cultivar response to environment and in identifying various physiological traits that could lead to improved yields. The objective of this study was to evaluate the growth, yield...

Production of biomass/energy crops on phosphatic clay soils in central Florida

Energy Technology Data Exchange (ETDEWEB)

Stricker, J.A. [Univ. of Florida, Bartow, FL (United States); Prine, G.M.; Woodard, K.R. [Univ. of Florida, Gainesville, FL (United States); Anderson, D.L. [Univ. of Florida, Belle Glade, FL (United States); Shibles, D.B.; Riddle, T.C. [Mined Lands Agricultural Research/Demonstration Project, Bartow, FL (United States)

1993-12-31

Phosphatic clay is a byproduct of phosphate mining. Presently more than 40,470 ha have been created, most in central Florida, and about 810 ha are being added each year. Phosphatic clays have high fertility and high water holding capacity, reducing fertilization costs and producing high yields without irrigation. Based on 10 years of research, scientists have selected tall annual-regenerating perennial C-4 grasses as having the greatest potential for biomass production in Florida. The purpose of this work was to determine the feasibility of growing these tall perennial grasses for biomass on phosphatic clay. Elephantgrass, sugarcane and energycane, and erianthus were planted in duplicate replications on phosphatic clay soil in late August, 1986. yield was measured by one harvest in December or January each year for four years. Nitrogen fertilization included 112 kg ha{sup {minus}1} the first year followed by 134 kg ha{sup {minus}1} for the next three years. Nitrogen is the only supplemental nutrient needed to grow all tall grass crops on phosphatic clay. The average annual oven dry matter yield over the 4-yr period was 36.3 Mg ha{sup {minus}1} for PI 300086 elephantgrass, 45.2 for N51 elephantgrass, 42.5 for L79-1002 energycane, 49.0 for US72-1153 energycane, 49.7 for US78-1009 sugarcane, 52.2 for US56-9 sugarcane, 56.2 for CP72-1210 sugarcane, and 48.8 for 1K-7647 erianthus. More recent work has utilized domestic sewage sludge as a nitrogen source for the tall grasses. Preliminary sugar yields of selected sugarcane accessions & sweet sorghum were 4.7 Mg ha{sup {minus}1} for CP72-1210, 12.5 for US67-2022, 3.4 for US78-1009 and 1.3 Mg ha{sup {minus}1} for sweet sorghum. The high yields of the tall grasses grown on phosphatic clay with low inputs indicate a great potential for these crops as a source of renewable energy. A sustainable cropping system may be maintained by utilizing municipal sewage sludge as a nitrogen source with tall grasses on phosphatic clay.

ATLAS Metadata Interface (AMI), a generic metadata framework

CERN Document Server

Fulachier, Jerome; The ATLAS collaboration

2016-01-01

The ATLAS Metadata Interface (AMI) is a mature application of more than 15 years of existence. Mainly used by the ATLAS experiment at CERN, it consists of a very generic tool ecosystem for metadata aggregation and cataloguing. We briefly describe the architecture, the main services and the benefits of using AMI in big collaborations, especially for high energy physics. We focus on the recent improvements, for instance: the lightweight clients (Python, Javascript, C++), the new smart task server system and the Web 2.0 AMI framework for simplifying the development of metadata-oriented web interfaces.

Distributed metadata servers for cluster file systems using shared low latency persistent key-value metadata store

Science.gov (United States)

Bent, John M.; Faibish, Sorin; Pedone, Jr., James M.; Tzelnic, Percy; Ting, Dennis P. J.; Ionkov, Latchesar A.; Grider, Gary

2017-12-26

A cluster file system is provided having a plurality of distributed metadata servers with shared access to one or more shared low latency persistent key-value metadata stores. A metadata server comprises an abstract storage interface comprising a software interface module that communicates with at least one shared persistent key-value metadata store providing a key-value interface for persistent storage of key-value metadata. The software interface module provides the key-value metadata to the at least one shared persistent key-value metadata store in a key-value format. The shared persistent key-value metadata store is accessed by a plurality of metadata servers. A metadata request can be processed by a given metadata server independently of other metadata servers in the cluster file system. A distributed metadata storage environment is also disclosed that comprises a plurality of metadata servers having an abstract storage interface to at least one shared persistent key-value metadata store.

Harvesting NASA's Common Metadata Repository

Science.gov (United States)

Shum, D.; Mitchell, A. E.; Durbin, C.; Norton, J.

2017-12-01

As part of NASA's Earth Observing System Data and Information System (EOSDIS), the Common Metadata Repository (CMR) stores metadata for over 30,000 datasets from both NASA and international providers along with over 300M granules. This metadata enables sub-second discovery and facilitates data access. While the CMR offers a robust temporal, spatial and keyword search functionality to the general public and international community, it is sometimes more desirable for international partners to harvest the CMR metadata and merge the CMR metadata into a partner's existing metadata repository. This poster will focus on best practices to follow when harvesting CMR metadata to ensure that any changes made to the CMR can also be updated in a partner's own repository. Additionally, since each partner has distinct metadata formats they are able to consume, the best practices will also include guidance on retrieving the metadata in the desired metadata format using CMR's Unified Metadata Model translation software.

ATLAS Metadata Interface (AMI), a generic metadata framework

Science.gov (United States)

Fulachier, J.; Odier, J.; Lambert, F.; ATLAS Collaboration

2017-10-01

The ATLAS Metadata Interface (AMI) is a mature application of more than 15 years of existence. Mainly used by the ATLAS experiment at CERN, it consists of a very generic tool ecosystem for metadata aggregation and cataloguing. We briefly describe the architecture, the main services and the benefits of using AMI in big collaborations, especially for high energy physics. We focus on the recent improvements, for instance: the lightweight clients (Python, JavaScript, C++), the new smart task server system and the Web 2.0 AMI framework for simplifying the development of metadata-oriented web interfaces.

ATLAS Metadata Interface (AMI), a generic metadata framework

CERN Document Server

AUTHOR|(SzGeCERN)573735; The ATLAS collaboration; Odier, Jerome; Lambert, Fabian

2017-01-01

The ATLAS Metadata Interface (AMI) is a mature application of more than 15 years of existence. Mainly used by the ATLAS experiment at CERN, it consists of a very generic tool ecosystem for metadata aggregation and cataloguing. We briefly describe the architecture, the main services and the benefits of using AMI in big collaborations, especially for high energy physics. We focus on the recent improvements, for instance: the lightweight clients (Python, JavaScript, C++), the new smart task server system and the Web 2.0 AMI framework for simplifying the development of metadata-oriented web interfaces.

Water Use and Quality Footprints of Biofuel Crops in Florida

Science.gov (United States)

Shukla, S.; Hendricks, G.; Helsel, Z.; Knowles, J.

2013-12-01

The use of biofuel crops for future energy needs will require considerable amounts of water inputs. Favorable growing conditions for large scale biofuel production exist in the sub-tropical environment of South Florida. However, large-scale land use change associated with biofuel crops is likely to affect the quantity and quality of water within the region. South Florida's surface and ground water resources are already stressed by current allocations. Limited data exists to allocate water for growing the energy crops as well as evaluate the accompanying hydrologic and water quality impacts of large-scale land use changes. A three-year study was conducted to evaluate the water supply and quality impacts of three energy crops: sugarcane, switchgrass, and sweet sorghum (with a winter crop). Six lysimeters were used to collect the data needed to quantify crop evapotranspiration (ETc), and nitrogen (N) and phosphorus (P) levels in groundwater and discharge (drainage and runoff). Each lysimeter (4.85 x 3.65 x 1.35 m) was equipped to measure water input, output, and storage. The irrigation, runoff, and drainage volumes were measured using flow meters. Groundwater samples were collected bi-weekly and drainage/runoff sampling was event based; samples were analyzed for nitrogen (N) and phosphorous (P) species. Data collected over the three years revealed that the average annual ETc was highest for sugarcane (1464 mm) followed by switchgrass and sweet sorghum. Sweet sorghum had the highest total N (TN) concentration (7.6 mg/L) in groundwater and TN load (36 kg/ha) in discharge. However, sweet sorghum had the lowest total P (TP) concentration (1.2 mg/L) in groundwater and TP load (9 kg/ha) in discharge. Water use footprint for ethanol (liter of water used per liter of ethanol produced) was lowest for sugarcane and highest for switchgrass. Switchgrass had the highest P-load footprint for ethanol. No differences were observed for the TN load footprint for ethanol. This is the

USGIN ISO metadata profile

Science.gov (United States)

Richard, S. M.

2011-12-01

The USGIN project has drafted and is using a specification for use of ISO 19115/19/39 metadata, recommendations for simple metadata content, and a proposal for a URI scheme to identify resources using resolvable http URI's(see http://lab.usgin.org/usgin-profiles). The principal target use case is a catalog in which resources can be registered and described by data providers for discovery by users. We are currently using the ESRI Geoportal (Open Source), with configuration files for the USGIN profile. The metadata offered by the catalog must provide sufficient content to guide search engines to locate requested resources, to describe the resource content, provenance, and quality so users can determine if the resource will serve for intended usage, and finally to enable human users and sofware clients to obtain or access the resource. In order to achieve an operational federated catalog system, provisions in the ISO specification must be restricted and usage clarified to reduce the heterogeneity of 'standard' metadata and service implementations such that a single client can search against different catalogs, and the metadata returned by catalogs can be parsed reliably to locate required information. Usage of the complex ISO 19139 XML schema allows for a great deal of structured metadata content, but the heterogenity in approaches to content encoding has hampered development of sophisticated client software that can take advantage of the rich metadata; the lack of such clients in turn reduces motivation for metadata producers to produce content-rich metadata. If the only significant use of the detailed, structured metadata is to format into text for people to read, then the detailed information could be put in free text elements and be just as useful. In order for complex metadata encoding and content to be useful, there must be clear and unambiguous conventions on the encoding that are utilized by the community that wishes to take advantage of advanced metadata

Screening for sugarcane brown rust in first clonal stage of the Canal Point sugarcane breeding program

Science.gov (United States)

Sugarcane (Saccharum spp.) brown rust (caused by Puccinia melanocephala H. & P. Sydow) was first reported in the United States in 1978 and is still one of great challenges for sugarcane production. A better understanding of sugarcane genotypic variation in response to brown rust will help optimize b...

Factors Affecting Sugarcane Production in Pakistan

Directory of Open Access Journals (Sweden)

Adnan Nazir

2013-05-01

Full Text Available This study was undertaken to identify the factors affecting sugarcane production in Pakistan. Data were collected from 387 sugarcane growers from Sindh, Punjab and NWFP province. Data were collected during the period 2007-08. The study reveals that the costs of inputs of sugarcane i.e. urea, DAP, FYM, land preparation, seed and its application, weeding and cost of irrigation were the important factors which influenced on the returns of sugarcane growers. The effectiveness was examined by using the Cobb-Douglas production function; MVP and allocative efficiency were calculated. The coefficient of multiple determinations R2 was 0.9249, which indicated that 92% variation in the cost of inputs was explained by all explanatory variables and the adjusted R2 was 92%. The F-value was 666.94 and was highly significant at 5% level of significance, indicating that the regression model was well fitted. The high prices of inputs, low price of output, delay in payments and lack of scientific knowledge were the major problems in sugarcane production. In order to enhance the productivity of sugarcane in the country, government should solve the identified problems to increase the income of sugarcane growers.

Sugarcane starch: quantitative determination and characterization

Directory of Open Access Journals (Sweden)

Joelise de Alencar Figueira

2011-09-01

Full Text Available Starch is found in sugarcane as a storage polysaccharide. Starch concentrations vary widely depending on the country, variety, developmental stage, and growth conditions. The purpose of this study was to determine the starch content in different varieties of sugarcane, between May and November 2007, and some characteristics of sugarcane starch such as structure and granules size; gelatinization temperature; starch solution filterability; and susceptibility to glucoamylase, pullulanase, and commercial bacterial and fungal α-amylase enzymes. Susceptibility to debranching amylolytic isoamylase enzyme from Flavobacterium sp. was also tested. Sugarcane starch had spherical shape with a diameter of 1-3 µm. Sugarcane starch formed complexes with iodine, which showed greater absorption in the range of 540 to 620 nm. Sugarcane starch showed higher susceptibility to glucoamylase compared to that of waxy maize, cassava, and potato starch. Sugarcane starch also showed susceptibility to debranching amylolytic pullulanases similar to that of waxy rice starch. It also showed susceptibility to α-amylase from Bacillus subtilis, Bacillus licheniformis, and Aspergillus oryzae similar to that of the other tested starches producing glucose, maltose, maltotriose, maltotetraose, maltopentose and limit α- dextrin.

Prospecting sugarcane resistance to Sugarcane yellow leaf virus by genome-wide association.

Science.gov (United States)

Debibakas, S; Rocher, S; Garsmeur, O; Toubi, L; Roques, D; D'Hont, A; Hoarau, J-Y; Daugrois, J H

2014-08-01

Using GWAS approaches, we detected independent resistant markers in sugarcane towards a vectored virus disease. Based on comparative genomics, several candidate genes potentially involved in virus/aphid/plant interactions were pinpointed. Yellow leaf of sugarcane is an emerging viral disease whose causal agent is a Polerovirus, the Sugarcane yellow leaf virus (SCYLV) transmitted by aphids. To identify quantitative trait loci controlling resistance to yellow leaf which are of direct relevance for breeding, we undertook a genome-wide association study (GWAS) on a sugarcane cultivar panel (n = 189) representative of current breeding germplasm. This panel was fingerprinted with 3,949 polymorphic markers (DArT and AFLP). The panel was phenotyped for SCYLV infection in leaves and stalks in two trials for two crop cycles, under natural disease pressure prevalent in Guadeloupe. Mixed linear models including co-factors representing population structure fixed effects and pairwise kinship random effects provided an efficient control of the risk of inflated type-I error at a genome-wide level. Six independent markers were significantly detected in association with SCYLV resistance phenotype. These markers explained individually between 9 and 14 % of the disease variation of the cultivar panel. Their frequency in the panel was relatively low (8-20 %). Among them, two markers were detected repeatedly across the GWAS exercises based on the different disease resistance parameters. These two markers could be blasted on Sorghum bicolor genome and candidate genes potentially involved in plant-aphid or plant-virus interactions were localized in the vicinity of sorghum homologs of sugarcane markers. Our results illustrate the potential of GWAS approaches to prospect among sugarcane germplasm for accessions likely bearing resistance alleles of significant effect useful in breeding programs.

Sugarcane outgrowers in Ethiopia

DEFF Research Database (Denmark)

Wendimu, Mengistu Assefa; Henningsen, Arne; Gibbon, Peter

2016-01-01

-users. Using data from the oldest and some more recently established sugarcane outgrower schemes in Ethiopia, this paper examines the effects of compulsory participation in sugarcane outgrower production on total household income and asset stocks. Because outgrowers and non-outgrowers may have some differences...

Metadata Realities for Cyberinfrastructure: Data Authors as Metadata Creators

Science.gov (United States)

Mayernik, Matthew Stephen

2011-01-01

As digital data creation technologies become more prevalent, data and metadata management are necessary to make data available, usable, sharable, and storable. Researchers in many scientific settings, however, have little experience or expertise in data and metadata management. In this dissertation, I explore the everyday data and metadata…

Sugarcane bio ethanol and bioelectricity

Energy Technology Data Exchange (ETDEWEB)

Nogueira, Luiz Augusto Horta; Leal, Manoel Regis Lima Verde

2012-07-01

This chapter approaches the Brazilian sugar cane production and processing model, sugarcane processing, sugarcane reception, sugarcane preparation and juice extraction, juice treatment, fermentation, distillation, sector efficiencies and future improvement - 2007, 2015 and 2025, present situation (considering the 2007/2008 harvesting season), prospective values for 2015 and for 2025, bioelectricity generation, straw recovery, bagasse availability, energy balance, present situation, perspective for improvements in the GHG mitigation potential, bio ethanol production chain - from field to tank, and surplus electricity generation.

The metadata manual a practical workbook

CERN Document Server

Lubas, Rebecca; Schneider, Ingrid

2013-01-01

Cultural heritage professionals have high levels of training in metadata. However, the institutions in which they practice often depend on support staff, volunteers, and students in order to function. With limited time and funding for training in metadata creation for digital collections, there are often many questions about metadata without a reliable, direct source for answers. The Metadata Manual provides such a resource, answering basic metadata questions that may appear, and exploring metadata from a beginner's perspective. This title covers metadata basics, XML basics, Dublin Core, VRA C

Sugarcane Elongin C is involved in infection by sugarcane mosaic disease pathogens.

Science.gov (United States)

Zhai, Yushan; Deng, Yuqing; Cheng, Guangyuan; Peng, Lei; Zheng, Yanru; Yang, Yongqing; Xu, Jingsheng

2015-10-23

Sugarcane (Saccharum sp. hybrid) provides the main source of sugar for humans. Sugarcane mosaic disease (SMD) is a major threat to sugarcane production. Currently, control of SMD is mainly dependent on breeding resistant cultivars through hybridization, which is time-consuming. Understanding the mechanism of viral infection may facilitate novel strategies to breed cultivars resistant to SMD and to control the disease. In this study, a wide interaction was detected between the viral VPg protein and host proteins. Several genes were screened from sugarcane cDNA library that could interact with Sugarcane streak mosaic virus VPg, including SceIF4E1 and ScELC. ScELC was predicted to be a cytoplasmic protein, but subcellular localization analysis showed it was distributed both in cytoplasmic and nuclear, and interactions were also detected between ScELC and VPg of SCMV or SrMV that reveal ScELC was widely used in the SMD pathogen infection process. ScELC and VPgs interacted in the nucleus, and may function to enhance the viral transcription rate. ScELC also interacted with SceIF4E2 both in the cytoplasm and nucleus, but not with SceIF4E1 and SceIF4E3. These results suggest that ScELC may be essential for the function of SceIF4E2, an isomer of eIF4E. Copyright © 2015 Elsevier Inc. All rights reserved.

Greenhouse Gas Emissions from Brazilian Sugarcane Soils

Science.gov (United States)

Carmo, J.; Pitombo, L.; Cantarella, H.; Rosseto, R.; Andrade, C.; Martinelli, L.; Gava, G.; Vargas, V.; Sousa-Neto, E.; Zotelli, L.; Filoso, S.; Neto, A. E.

2012-04-01

Bioethanol from sugarcane is increasingly seen as a sustainable alternative energy source. Besides having high photosynthetic efficiency, sugarcane is a perennial tropical grass crop that can re-grow up to five or more years after being planted. Brazil is the largest producer of sugarcane in the world and management practices commonly used in the country lead to lower rates of inorganic N fertilizer application than sugarcane grown elsewhere, or in comparison to other feedstocks such as corn. Therefore, Brazilian sugarcane ethanol potentially promotes greenhouse gas savings. For that reason, several recent studies have attempted to assess emissions of greenhouse gases (GHG) during sugarcane production in the tropics. However, estimates have been mainly based on models due to a general lack of field data. In this study, we present data from in situ experiments on emission of three GHG (CO2, N2O, and CH4) in sugarcane fields in Brazil. Emissions are provided for sugarcane in different phases of the crop life cycle and under different management practices. Our results show that the use of nitrogen fertilizer in sugarcane crops resulted in an emission factor for N2O similar to those predicted by IPCC (1%), ranging from 0.59% in ratoon cane to 1.11% in plant cane. However, when vinasse was applied in addition to mineralN fertilizer, emissions of GHG increased in comparison to those from the use of mineral N fertilizer alone. Emissions increased significantly when experiments mimicked the accumulation of cane trash on the soil surface with 14 tons ha-1and 21 tons ha-1, which emission factor were 1.89% and 3.03%, respectively. This study is representative of Brazilian sugarcane systems under specific conditions for key factors affecting GHG emissions from soils. Nevertheless, the data provided will improve estimates of GHG from Brazilian sugarcane, and efforts to assess sugarcane ethanol sustainability and energy balance. Funding provided by the São Paulo Research

A Metadata-Rich File System

Energy Technology Data Exchange (ETDEWEB)

Ames, S; Gokhale, M B; Maltzahn, C

2009-01-07

Despite continual improvements in the performance and reliability of large scale file systems, the management of file system metadata has changed little in the past decade. The mismatch between the size and complexity of large scale data stores and their ability to organize and query their metadata has led to a de facto standard in which raw data is stored in traditional file systems, while related, application-specific metadata is stored in relational databases. This separation of data and metadata requires considerable effort to maintain consistency and can result in complex, slow, and inflexible system operation. To address these problems, we have developed the Quasar File System (QFS), a metadata-rich file system in which files, metadata, and file relationships are all first class objects. In contrast to hierarchical file systems and relational databases, QFS defines a graph data model composed of files and their relationships. QFS includes Quasar, an XPATH-extended query language for searching the file system. Results from our QFS prototype show the effectiveness of this approach. Compared to the defacto standard, the QFS prototype shows superior ingest performance and comparable query performance on user metadata-intensive operations and superior performance on normal file metadata operations.

Power plant perspectives for sugarcane mills

International Nuclear Information System (INIS)

Bocci, E.; Di Carlo, A.; Marcelo, D.

2009-01-01

Biomass, integral to life, is one of the main energy sources that modern technologies could widely develop, overcoming inefficient and pollutant uses. The sugarcane bagasse is one of the more abundant biomass. Moreover, the fluctuating sugar and energy prices force the sugarcane companies to implement improved power plants. Thanks to a multiyear collaboration between University of Rome and University of Piura and Chiclayo, this paper investigates, starting from the real data of an old sugarcane plant, the energy efficiency of the plant. Furthermore, it explores possible improvements as higher temperature and pressure Rankine cycles and innovative configurations based on gasifier plus hot gas conditioning and gas turbine or molten carbonate fuel cells. Even if the process of sugar extraction from sugarcane and the relative Rankine cycles power plants are well documented in literature, this paper shows that innovative power plant configurations can increase the bagasse-based cogeneration potential. Sugarcane companies can become electricity producers, having convenience in the use of sugarcane leaves and trash (when it is feasible). The worldwide implementation of advanced power plants, answering to a market competition, will improve significantly the renewable electricity produced, reducing CO 2 emissions, and increasing economic and social benefits.

METADATA, DESKRIPSI SERTA TITIK AKSESNYA DAN INDOMARC

Directory of Open Access Journals (Sweden)

Sulistiyo Basuki

2012-07-01

Full Text Available lstilah metadata mulai sering muncul dalam literature tentang database management systems (DBMS pada tahun 1980 an. lstilah tersebut digunakan untuk menggambarkan informasi yang diperlukan untuk mencatat karakteristik informasi yang terdapat pada pangkalan data. Banyak sumber yang mengartikan istilah metadata. Metadata dapat diartikan sumber, menunjukan lokasi dokumen, serta memberikan ringkasan yang diperlukan untuk memanfaat-kannya. Secara umum ada 3 bagian yang digunakan untuk membuat metadata sebagai sebuah paket informasi, dan penyandian (encoding pembuatan deskripsi paket informasi, dan penyediaan akses terhadap deskripsi tersebut. Dalam makalah ini diuraikan mengenai konsep data dalam kaitannya dengan perpustakaan. Uraian meliputi definisi metadata; fungsi metadata; standar penyandian (encoding, cantuman bibliografis. surogat, metadata; penciptaan isi cantuman surogat; ancangan terhadap format metadata; serta metadata dan standar metadata.

Sugarcane Elongin C is involved in infection by sugarcane mosaic disease pathogens

Energy Technology Data Exchange (ETDEWEB)

Zhai, Yushan; Deng, Yuqing; Cheng, Guangyuan; Peng, Lei; Zheng, Yanru; Yang, Yongqing, E-mail: yyq287346@163.com; Xu, Jingsheng, E-mail: xujingsheng@126.com

2015-10-23

Sugarcane (Saccharum sp. hybrid) provides the main source of sugar for humans. Sugarcane mosaic disease (SMD) is a major threat to sugarcane production. Currently, control of SMD is mainly dependent on breeding resistant cultivars through hybridization, which is time-consuming. Understanding the mechanism of viral infection may facilitate novel strategies to breed cultivars resistant to SMD and to control the disease. In this study, a wide interaction was detected between the viral VPg protein and host proteins. Several genes were screened from sugarcane cDNA library that could interact with Sugarcane streak mosaic virus VPg, including SceIF4E1 and ScELC. ScELC was predicted to be a cytoplasmic protein, but subcellular localization analysis showed it was distributed both in cytoplasmic and nuclear, and interactions were also detected between ScELC and VPg of SCMV or SrMV that reveal ScELC was widely used in the SMD pathogen infection process. ScELC and VPgs interacted in the nucleus, and may function to enhance the viral transcription rate. ScELC also interacted with SceIF4E2 both in the cytoplasm and nucleus, but not with SceIF4E1 and SceIF4E3. These results suggest that ScELC may be essential for the function of SceIF4E2, an isomer of eIF4E. - Highlights: • We cloned ScELC, SceIF4E1, SceIF4E2 and SceIF4E3 from sugarcane accession Badila. • We examined interactions among VPg, ScELC, SceIF4E1, SceIF4E2 and SceIF4E3. • We proofed that ScELC interacted with VPgs of SCMV, SrMV and SCSMV. • We proofed that ScELC interacted with SceIF4E2 but not SceIF4E1 or SceIF4E3.

Sugarcane Elongin C is involved in infection by sugarcane mosaic disease pathogens

International Nuclear Information System (INIS)

Zhai, Yushan; Deng, Yuqing; Cheng, Guangyuan; Peng, Lei; Zheng, Yanru; Yang, Yongqing; Xu, Jingsheng

2015-01-01

Sugarcane (Saccharum sp. hybrid) provides the main source of sugar for humans. Sugarcane mosaic disease (SMD) is a major threat to sugarcane production. Currently, control of SMD is mainly dependent on breeding resistant cultivars through hybridization, which is time-consuming. Understanding the mechanism of viral infection may facilitate novel strategies to breed cultivars resistant to SMD and to control the disease. In this study, a wide interaction was detected between the viral VPg protein and host proteins. Several genes were screened from sugarcane cDNA library that could interact with Sugarcane streak mosaic virus VPg, including SceIF4E1 and ScELC. ScELC was predicted to be a cytoplasmic protein, but subcellular localization analysis showed it was distributed both in cytoplasmic and nuclear, and interactions were also detected between ScELC and VPg of SCMV or SrMV that reveal ScELC was widely used in the SMD pathogen infection process. ScELC and VPgs interacted in the nucleus, and may function to enhance the viral transcription rate. ScELC also interacted with SceIF4E2 both in the cytoplasm and nucleus, but not with SceIF4E1 and SceIF4E3. These results suggest that ScELC may be essential for the function of SceIF4E2, an isomer of eIF4E. - Highlights: • We cloned ScELC, SceIF4E1, SceIF4E2 and SceIF4E3 from sugarcane accession Badila. • We examined interactions among VPg, ScELC, SceIF4E1, SceIF4E2 and SceIF4E3. • We proofed that ScELC interacted with VPgs of SCMV, SrMV and SCSMV. • We proofed that ScELC interacted with SceIF4E2 but not SceIF4E1 or SceIF4E3.

Mercury Toolset for Spatiotemporal Metadata

Science.gov (United States)

Devarakonda, Ranjeet; Palanisamy, Giri; Green, James; Wilson, Bruce; Rhyne, B. Timothy; Lindsley, Chris

2010-06-01

Mercury (http://mercury.ornl.gov) is a set of tools for federated harvesting, searching, and retrieving metadata, particularly spatiotemporal metadata. Version 3.0 of the Mercury toolset provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, facetted type search, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. It provides a single portal to very quickly search for data and information contained in disparate data management systems, each of which may use different metadata formats. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury periodically (typically daily)harvests metadata sources through a collection of interfaces and re-indexes these metadata to provide extremely rapid search capabilities, even over collections with tens of millions of metadata records. A number of both graphical and application interfaces have been constructed within Mercury, to enable both human users and other computer programs to perform queries. Mercury was also designed to support multiple different projects, so that the particular fields that can be queried and used with search filters are easy to configure for each different project.

Mercury Toolset for Spatiotemporal Metadata

Science.gov (United States)

Wilson, Bruce E.; Palanisamy, Giri; Devarakonda, Ranjeet; Rhyne, B. Timothy; Lindsley, Chris; Green, James

2010-01-01

Mercury (http://mercury.ornl.gov) is a set of tools for federated harvesting, searching, and retrieving metadata, particularly spatiotemporal metadata. Version 3.0 of the Mercury toolset provides orders of magnitude improvements in search speed, support for additional metadata formats, integration with Google Maps for spatial queries, facetted type search, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. It provides a single portal to very quickly search for data and information contained in disparate data management systems, each of which may use different metadata formats. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury periodically (typically daily) harvests metadata sources through a collection of interfaces and re-indexes these metadata to provide extremely rapid search capabilities, even over collections with tens of millions of metadata records. A number of both graphical and application interfaces have been constructed within Mercury, to enable both human users and other computer programs to perform queries. Mercury was also designed to support multiple different projects, so that the particular fields that can be queried and used with search filters are easy to configure for each different project.

Geographic population structure of the sugarcane borer, Diatraea saccharalis (F. (Lepidoptera: Crambidae, in the southern United States.

Directory of Open Access Journals (Sweden)

Andrea L Joyce

Full Text Available The sugarcane borer moth, Diatraea saccharalis, is widespread throughout the Western Hemisphere, and is considered an introduced species in the southern United States. Although this moth has a wide distribution and is a pest of many crop plants including sugarcane, corn, sorghum and rice, it is considered one species. The objective was to investigate whether more than one introduction of D. saccharalis had occurred in the southern United States and whether any cryptic species were present. We field collected D. saccharalis in Texas, Louisiana and Florida in the southern United States. Two molecular markers, AFLPs and mitochondrial COI, were used to examine genetic variation among these regional populations and to compare the sequences with those available in GenBank and BOLD. We found geographic population structure in the southern United States which suggests two introductions and the presence of a previously unknown cryptic species. Management of D. saccharalis would likely benefit from further investigation of population genetics throughout the range of this species.

Kenaf and cowpea as sugarcane cover crops

Science.gov (United States)

The use of cover crops during the fallow period prior to planting sugarcane has the potential to influence not only the following sugarcane crop, but the economics of the production system as a whole. Typically, a Louisiana sugarcane field is replanted every four years due to declining yields, and,...

Sugarcane for Bioethanol: Soil and Environmental Issues

NARCIS (Netherlands)

Hartemink, A.E.

2008-01-01

Cultivation of sugarcane for bioethanol is increasing and the area under sugarcane is expanding. Much of the sugar for bioethanol comes from large plantations where it is grown with relatively high inputs. Sugarcane puts a high demands on the soil because of the use of heavy machinery and because

Sugarcane genes related to mitochondrial function

Directory of Open Access Journals (Sweden)

Fonseca Ghislaine V.

2001-01-01

Full Text Available Mitochondria function as metabolic powerhouses by generating energy through oxidative phosphorylation and have become the focus of renewed interest due to progress in understanding the subtleties of their biogenesis and the discovery of the important roles which these organelles play in senescence, cell death and the assembly of iron-sulfur (Fe/S centers. Using proteins from the yeast Saccharomyces cerevisiae, Homo sapiens and Arabidopsis thaliana we searched the sugarcane expressed sequence tag (SUCEST database for the presence of expressed sequence tags (ESTs with similarity to nuclear genes related to mitochondrial functions. Starting with 869 protein sequences, we searched for sugarcane EST counterparts to these proteins using the basic local alignment search tool TBLASTN similarity searching program run against 260,781 sugarcane ESTs contained in 81,223 clusters. We were able to recover 367 clusters likely to represent sugarcane orthologues of the corresponding genes from S. cerevisiae, H. sapiens and A. thaliana with E-value <= 10-10. Gene products belonging to all functional categories related to mitochondrial functions were found and this allowed us to produce an overview of the nuclear genes required for sugarcane mitochondrial biogenesis and function as well as providing a starting point for detailed analysis of sugarcane gene structure and physiology.

Sugarcane energy use: The Cuban case

Energy Technology Data Exchange (ETDEWEB)

Alonso-Pippo, Walfrido; Luengo, Carlos A. [Grupo Combustiveis Alternativos, DFA/IFGW/UNICAMP, CP 6165, CEP 13083-970 Campinas, Sao Paulo (Brazil); Koehlinger, John [Energy Consultant. 1322 Hepburn Ave 1, Louisville, KY 40204 (United States); Garzone, Pietro; Cornacchia, Giacinto [ENEA Trisaia Research Centre. Prot-STP. SS106 Jonica, Rotondella (Italy)

2008-06-15

This paper examines the history, methods, costs, and future prospects of Cuba's attempts to develop the energy potential of sugarcane. An overview of the main factors affecting the current sugarcane agro-industry in Cuba is provided, along with an analysis of why, despite attempts by the Cuban government to revive the country's sugarcane agro-industry, the industry continues to decline. The prevailing conditions and degree of modernization in Cuban sugar factories are evaluated. The sugar-agro industry's main production bottlenecks are studied. The fall in sugarcane yield from 57.5 ton/ha in 1991 to 22.4 ton/ha in 2005 and its relation to land use is explained. The socio-economic impact of the sugarcane agro-industry's downsizing is assessed. The governmental and quasi-governmental entities in charge of sugarcane energy use development and the country's legal framework are analyzed. The Cuban sugarcane agro-industry's opportunities in the growing international biofuels and bioenergy market are evaluated. To situate Cuba within the global bioenergy market, international best practices relating to the production and commercialization of biofuels are examined to determine the degree to which these experiences can be transferred to Cuba. The analysis of the Cuba sugar industry's biofuel potential is based on a comparative technical-economic assessment of three possible production scenarios: (1) the current situation, where only sugar is produced; (2) simultaneous production of sugar-anhydrous ethanol; and (3) production of sugar-ethanol and simultaneous generation of surplus electricity exported to a public grid. Some of the key assumptions underlying these analyses are as follows: Ethanol production and operation costs for a 7000 ton/day-sugar mill are estimated to be 0.25 and 0.23 USD/l, respectively. The influence of gasoline prices on sugar-ethanol production is also assessed. The kWh production and operation costs starting from

Sugarcane energy use: The Cuban case

International Nuclear Information System (INIS)

Alonso-Pippo, Walfrido; Luengo, Carlos A.; Koehlinger, John; Garzone, Pietro; Cornacchia, Giacinto

2008-01-01

This paper examines the history, methods, costs, and future prospects of Cuba's attempts to develop the energy potential of sugarcane. An overview of the main factors affecting the current sugarcane agro-industry in Cuba is provided, along with an analysis of why, despite attempts by the Cuban government to revive the country's sugarcane agro-industry, the industry continues to decline. The prevailing conditions and degree of modernization in Cuban sugar factories are evaluated. The sugar-agro industry's main production bottlenecks are studied. The fall in sugarcane yield from 57.5 ton/ha in 1991 to 22.4 ton/ha in 2005 and its relation to land use is explained. The socio-economic impact of the sugarcane agro-industry's downsizing is assessed. The governmental and quasi-governmental entities in charge of sugarcane energy use development and the country's legal framework are analyzed. The Cuban sugarcane agro-industry's opportunities in the growing international biofuels and bioenergy market are evaluated. To situate Cuba within the global bioenergy market, international best practices relating to the production and commercialization of biofuels are examined to determine the degree to which these experiences can be transferred to Cuba. The analysis of the Cuba sugar industry's biofuel potential is based on a comparative technical-economic assessment of three possible production scenarios: (1) the current situation, where only sugar is produced; (2) simultaneous production of sugar-anhydrous ethanol; and (3) production of sugar-ethanol and simultaneous generation of surplus electricity exported to a public grid. Some of the key assumptions underlying these analyses are as follows: Ethanol production and operation costs for a 7000 ton/day-sugar mill are estimated to be 0.25 and 0.23 USD/l, respectively. The influence of gasoline prices on sugar-ethanol production is also assessed. The kWh production and operation costs starting from sugarcane bagasse are estimated at 0

Department of the Interior metadata implementation guide—Framework for developing the metadata component for data resource management

Science.gov (United States)

Obuch, Raymond C.; Carlino, Jennifer; Zhang, Lin; Blythe, Jonathan; Dietrich, Christopher; Hawkinson, Christine

2018-04-12

The Department of the Interior (DOI) is a Federal agency with over 90,000 employees across 10 bureaus and 8 agency offices. Its primary mission is to protect and manage the Nation’s natural resources and cultural heritage; provide scientific and other information about those resources; and honor its trust responsibilities or special commitments to American Indians, Alaska Natives, and affiliated island communities. Data and information are critical in day-to-day operational decision making and scientific research. DOI is committed to creating, documenting, managing, and sharing high-quality data and metadata in and across its various programs that support its mission. Documenting data through metadata is essential in realizing the value of data as an enterprise asset. The completeness, consistency, and timeliness of metadata affect users’ ability to search for and discover the most relevant data for the intended purpose; and facilitates the interoperability and usability of these data among DOI bureaus and offices. Fully documented metadata describe data usability, quality, accuracy, provenance, and meaning.Across DOI, there are different maturity levels and phases of information and metadata management implementations. The Department has organized a committee consisting of bureau-level points-of-contacts to collaborate on the development of more consistent, standardized, and more effective metadata management practices and guidance to support this shared mission and the information needs of the Department. DOI’s metadata implementation plans establish key roles and responsibilities associated with metadata management processes, procedures, and a series of actions defined in three major metadata implementation phases including: (1) Getting started—Planning Phase, (2) Implementing and Maintaining Operational Metadata Management Phase, and (3) the Next Steps towards Improving Metadata Management Phase. DOI’s phased approach for metadata management addresses

The RBV metadata catalog

Science.gov (United States)

Andre, Francois; Fleury, Laurence; Gaillardet, Jerome; Nord, Guillaume

2015-04-01

RBV (Réseau des Bassins Versants) is a French initiative to consolidate the national efforts made by more than 15 elementary observatories funded by various research institutions (CNRS, INRA, IRD, IRSTEA, Universities) that study river and drainage basins. The RBV Metadata Catalogue aims at giving an unified vision of the work produced by every observatory to both the members of the RBV network and any external person interested by this domain of research. Another goal is to share this information with other existing metadata portals. Metadata management is heterogeneous among observatories ranging from absence to mature harvestable catalogues. Here, we would like to explain the strategy used to design a state of the art catalogue facing this situation. Main features are as follows : - Multiple input methods: Metadata records in the catalog can either be entered with the graphical user interface, harvested from an existing catalogue or imported from information system through simplified web services. - Hierarchical levels: Metadata records may describe either an observatory, one of its experimental site or a single dataset produced by one instrument. - Multilingualism: Metadata can be easily entered in several configurable languages. - Compliance to standards : the backoffice part of the catalogue is based on a CSW metadata server (Geosource) which ensures ISO19115 compatibility and the ability of being harvested (globally or partially). On going tasks focus on the use of SKOS thesaurus and SensorML description of the sensors. - Ergonomy : The user interface is built with the GWT Framework to offer a rich client application with a fully ajaxified navigation. - Source code sharing : The work has led to the development of reusable components which can be used to quickly create new metadata forms in other GWT applications You can visit the catalogue (http://portailrbv.sedoo.fr/) or contact us by email rbv@sedoo.fr.

Creating context for the experiment record. User-defined metadata: investigations into metadata usage in the LabTrove ELN.

Science.gov (United States)

Willoughby, Cerys; Bird, Colin L; Coles, Simon J; Frey, Jeremy G

2014-12-22

The drive toward more transparency in research, the growing willingness to make data openly available, and the reuse of data to maximize the return on research investment all increase the importance of being able to find information and make links to the underlying data. The use of metadata in Electronic Laboratory Notebooks (ELNs) to curate experiment data is an essential ingredient for facilitating discovery. The University of Southampton has developed a Web browser-based ELN that enables users to add their own metadata to notebook entries. A survey of these notebooks was completed to assess user behavior and patterns of metadata usage within ELNs, while user perceptions and expectations were gathered through interviews and user-testing activities within the community. The findings indicate that while some groups are comfortable with metadata and are able to design a metadata structure that works effectively, many users are making little attempts to use it, thereby endangering their ability to recover data in the future. A survey of patterns of metadata use in these notebooks, together with feedback from the user community, indicated that while a few groups are comfortable with metadata and are able to design a metadata structure that works effectively, many users adopt a "minimum required" approach to metadata. To investigate whether the patterns of metadata use in LabTrove were unusual, a series of surveys were undertaken to investigate metadata usage in a variety of platforms supporting user-defined metadata. These surveys also provided the opportunity to investigate whether interface designs in these other environments might inform strategies for encouraging metadata creation and more effective use of metadata in LabTrove.

Soil uses during the sugarcane fallow period: influence on soil chemical and physical properties and on sugarcane productivity

Directory of Open Access Journals (Sweden)

Roniram Pereira da Silva

2014-04-01

Full Text Available The planting of diversified crops during the sugarcane fallow period can improve the chemical and physical properties and increase the production potential of the soil for the next sugarcane cycle. The primary purpose of this study was to assess the influence of various soil uses during the sugarcane fallow period on soil chemical and physical properties and productivity after the first sugarcane harvest. The experiment was conducted in two areas located in Jaboticabal, São Paulo State, Brazil (21º 14' 05'' S, 48º 17' 09'' W with two different soil types, namely: an eutroferric Red Latosol (RLe with high-clay texture (clay content = 680 g kg-1 and an acric Red Latosol (RLa with clayey texture (clay content = 440 g kg-1. A randomized block design with five replications and four treatments (crop sequences was used. The crop sequences during the sugarcane fallow period were soybean/millet/soybean, soybean/sunn hemp/soybean, soybean/fallow/soybean, and soybean. Soil use was found not to affect chemical properties and sugarcane productivity of RLe or RLa. The soybean/millet/soybean sequence improved aggregation in the acric Latosol.

Viewing and Editing Earth Science Metadata MOBE: Metadata Object Browser and Editor in Java

Science.gov (United States)

Chase, A.; Helly, J.

2002-12-01

Metadata is an important, yet often neglected aspect of successful archival efforts. However, to generate robust, useful metadata is often a time consuming and tedious task. We have been approaching this problem from two directions: first by automating metadata creation, pulling from known sources of data, and in addition, what this (paper/poster?) details, developing friendly software for human interaction with the metadata. MOBE and COBE(Metadata Object Browser and Editor, and Canonical Object Browser and Editor respectively), are Java applications for editing and viewing metadata and digital objects. MOBE has already been designed and deployed, currently being integrated into other areas of the SIOExplorer project. COBE is in the design and development stage, being created with the same considerations in mind as those for MOBE. Metadata creation, viewing, data object creation, and data object viewing, when taken on a small scale are all relatively simple tasks. Computer science however, has an infamous reputation for transforming the simple into complex. As a system scales upwards to become more robust, new features arise and additional functionality is added to the software being written to manage the system. The software that emerges from such an evolution, though powerful, is often complex and difficult to use. With MOBE the focus is on a tool that does a small number of tasks very well. The result has been an application that enables users to manipulate metadata in an intuitive and effective way. This allows for a tool that serves its purpose without introducing additional cognitive load onto the user, an end goal we continue to pursue.

Multi-facetted Metadata - Describing datasets with different metadata schemas at the same time

Science.gov (United States)

Ulbricht, Damian; Klump, Jens; Bertelmann, Roland

2013-04-01

Inspired by the wish to re-use research data a lot of work is done to bring data systems of the earth sciences together. Discovery metadata is disseminated to data portals to allow building of customized indexes of catalogued dataset items. Data that were once acquired in the context of a scientific project are open for reappraisal and can now be used by scientists that were not part of the original research team. To make data re-use easier, measurement methods and measurement parameters must be documented in an application metadata schema and described in a written publication. Linking datasets to publications - as DataCite [1] does - requires again a specific metadata schema and every new use context of the measured data may require yet another metadata schema sharing only a subset of information with the meta information already present. To cope with the problem of metadata schema diversity in our common data repository at GFZ Potsdam we established a solution to store file-based research data and describe these with an arbitrary number of metadata schemas. Core component of the data repository is an eSciDoc infrastructure that provides versioned container objects, called eSciDoc [2] "items". The eSciDoc content model allows assigning files to "items" and adding any number of metadata records to these "items". The eSciDoc items can be submitted, revised, and finally published, which makes the data and metadata available through the internet worldwide. GFZ Potsdam uses eSciDoc to support its scientific publishing workflow, including mechanisms for data review in peer review processes by providing temporary web links for external reviewers that do not have credentials to access the data. Based on the eSciDoc API, panMetaDocs [3] provides a web portal for data management in research projects. PanMetaDocs, which is based on panMetaWorks [4], is a PHP based web application that allows to describe data with any XML-based schema. It uses the eSciDoc infrastructures

Tethys Acoustic Metadata Database

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Tethys database houses the metadata associated with the acoustic data collection efforts by the Passive Acoustic Group. These metadata include dates, locations...

An integrated overview of metadata in ATLAS

International Nuclear Information System (INIS)

Gallas, E J; Malon, D; Hawkings, R J; Albrand, S; Torrence, E

2010-01-01

Metadata (data about data) arise in many contexts, from many diverse sources, and at many levels in ATLAS. Familiar examples include run-level, luminosity-block-level, and event-level metadata, and, related to processing and organization, dataset-level and file-level metadata, but these categories are neither exhaustive nor orthogonal. Some metadata are known a priori, in advance of data taking or simulation; other metadata are known only after processing, and occasionally, quite late (e.g., detector status or quality updates that may appear after initial reconstruction is complete). Metadata that may seem relevant only internally to the distributed computing infrastructure under ordinary conditions may become relevant to physics analysis under error conditions ('What can I discover about data I failed to process?'). This talk provides an overview of metadata and metadata handling in ATLAS, and describes ongoing work to deliver integrated metadata services in support of physics analysis.

The Brazilian sugarcane innovation system

International Nuclear Information System (INIS)

Tosi Furtado, Andre; Gaya Scandiffio, Mirna Ivonne; Barbosa Cortez, Luis Augusto

2011-01-01

Ethanol has recently been of great interest worldwide because it is a viable economic alternative to petroleum products and it is a renewable source of energy that mitigates the emission of greenhouse gases. Brazilian bioethanol from sugarcane is the most successful case at the world level because of its low cost and low level of greenhouse gas emissions. Brazil's success with sugarcane cannot be understood as based solely on a natural comparative advantage, but as a result of efforts that culminated in a positive trajectory of technological learning, relying mostly on incremental innovations. The purpose of this article is to analyze the key aspects of the innovation system built around the Brazilian sugarcane industry. It is based on the national innovation systems approach according to which innovation results from the interaction of different institutional actors. Institutional arrangements are analyzed as the basis for the innovative process, in particular R and D and the innovation policies and strategies of the main players in the sugarcane sector, including sugar and ethanol mills, industrial goods suppliers, public and private research institutions, and governmental agencies. - Research Highlights: → The Brazilian success in bioethanol is due to the sugarcane innovation system. → Private funds for R and D became central after IAA closure. → Nowadays Brazilian innovation system is transforming to keep its leadership. → Public funds for research in the second generation bioethanol.

How libraries use publisher metadata

Directory of Open Access Journals (Sweden)

Steve Shadle

2013-11-01

Full Text Available With the proliferation of electronic publishing, libraries are increasingly relying on publisher-supplied metadata to meet user needs for discovery in library systems. However, many publisher/content provider staff creating metadata are unaware of the end-user environment and how libraries use their metadata. This article provides an overview of the three primary discovery systems that are used by academic libraries, with examples illustrating how publisher-supplied metadata directly feeds into these systems and is used to support end-user discovery and access. Commonly seen metadata problems are discussed, with recommendations suggested. Based on a series of presentations given in Autumn 2012 to the staff of a large publisher, this article uses the University of Washington Libraries systems and services as illustrative examples. Judging by the feedback received from these presentations, publishers (specifically staff not familiar with the big picture of metadata standards work would benefit from a better understanding of the systems and services libraries provide using the data that is created and managed by publishers.

Metadata Life Cycles, Use Cases and Hierarchies

Directory of Open Access Journals (Sweden)

Ted Habermann

2018-05-01

Full Text Available The historic view of metadata as “data about data” is expanding to include data about other items that must be created, used, and understood throughout the data and project life cycles. In this context, metadata might better be defined as the structured and standard part of documentation, and the metadata life cycle can be described as the metadata content that is required for documentation in each phase of the project and data life cycles. This incremental approach to metadata creation is similar to the spiral model used in software development. Each phase also has distinct users and specific questions to which they need answers. In many cases, the metadata life cycle involves hierarchies where latter phases have increased numbers of items. The relationships between metadata in different phases can be captured through structure in the metadata standard, or through conventions for identifiers. Metadata creation and management can be streamlined and simplified by re-using metadata across many records. Many of these ideas have been developed to various degrees in several Geoscience disciplines and are being used in metadata for documenting the integrated life cycle of environmental research in the Arctic, including projects, collection sites, and datasets.

Active Marine Station Metadata

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Active Marine Station Metadata is a daily metadata report for active marine bouy and C-MAN (Coastal Marine Automated Network) platforms from the National Data...

Critical Metadata for Spectroscopy Field Campaigns

Directory of Open Access Journals (Sweden)

Barbara A. Rasaiah

2014-04-01

Full Text Available A field spectroscopy metadata standard is defined as those data elements that explicitly document the spectroscopy dataset and field protocols, sampling strategies, instrument properties and environmental and logistical variables. Standards for field spectroscopy metadata affect the quality, completeness, reliability, and usability of datasets created in situ. Currently there is no standardized methodology for documentation of in situ spectroscopy data or metadata. This paper presents results of an international experiment comprising a web-based survey and expert panel evaluation that investigated critical metadata in field spectroscopy. The survey participants were a diverse group of scientists experienced in gathering spectroscopy data across a wide range of disciplines. Overall, respondents were in agreement about a core metadataset for generic campaign metadata, allowing for a prioritization of critical metadata elements to be proposed including those relating to viewing geometry, location, general target and sampling properties, illumination, instrument properties, reference standards, calibration, hyperspectral signal properties, atmospheric conditions, and general project details. Consensus was greatest among individual expert groups in specific application domains. The results allow the identification of a core set of metadata fields that enforce long term data storage and serve as a foundation for a metadata standard. This paper is part one in a series about the core elements of a robust and flexible field spectroscopy metadata standard.

Sugarcane Yield Response to Furrow-Applied Organic Amendments on Sand Soils

Directory of Open Access Journals (Sweden)

J. Mabry McCray

2015-01-01

Full Text Available Organic amendments have been shown to increase sugarcane yield on sand soils in Florida. These soils have very low water and nutrient-holding capacities because of the low content of organic matter, silt, and clay. Because of high costs associated with broadcast application, this field study was conducted to determine sugarcane yield response to furrow application of two organic amendments on sand soils. One experiment compared broadcast application (226 m3 ha−1 of mill mud and yard waste compost, furrow application (14, 28, and 56 m3 ha−1 of these materials, and no amendment. Another experiment compared furrow applications (28 and 56 m3 ha−1 of mill mud and yard waste compost with no amendment. There were significant yield (t sucrose ha−1 responses to broadcast and furrow-applied mill mud but responses to furrow applications were not consistent across sites. There were no significant yield responses to yard waste compost suggesting that higher rates or repeated applications of this amendment will be required to achieve results comparable to mill mud. Results also suggest that enhancing water and nutrient availability in the entire volume of the root zone with broadcast incorporation of organic amendments is the more effective approach for low organic matter sands.

Effect of sugarcane waste in the control of interrill erosion

Directory of Open Access Journals (Sweden)

Wander Cardoso Valim

2016-06-01

Full Text Available The cultivation of sugarcane uses different cropping systems that result in varying quantities of crop waste, this may influence soil erosion. The objective of this study was to evaluate the loss of soil and water, the infiltration rate, and soil surface roughness in an area cultivated with sugarcane (Saccharum spp.. Six treatments with different levels of plant waste were evaluated: sugarcane without plant waste; sugarcane with 4.0 Mg ha-1 of waste; sugarcane with 8.0 Mg ha-1 of waste; sugarcane with 12.0 Mg ha-1 of waste; sugarcane with 16.0 Mg ha-1 of waste; and burned sugarcane. The treatments were arranged in a randomized block design with four replications, totalling 24 experimental plots. As soil depth increased, there is reduction in macroporosity, total soil porosity, organic carbon content, mean geometric diameter and weighted mean diameter of the soil aggregates, whereas the bulk density of the soil displays the opposite trend. The presence of sugarcane waste on the soil surface increases the time required for the initiation of surface runoff. Sugarcane waste does not alter soil surface roughness, and at the minimum amount of waste administered (4 Mg ha-1 reduces losses of soil and water and increases the infiltration rate. The lack of soil surface coverage after harvesting the sugarcane contributes to soil and water loss, and reduces the rate of stable infiltration of water into the soil.

The sustainability of ethanol production from sugarcane

International Nuclear Information System (INIS)

Goldemberg, Jose; Coelho, Suani Teixeira; Guardabassi, Patricia

2008-01-01

The rapid expansion of ethanol production from sugarcane in Brazil has raised a number of questions regarding its negative consequences and sustainability. Positive impacts are the elimination of lead compounds from gasoline and the reduction of noxious emissions. There is also the reduction of CO 2 emissions, since sugarcane ethanol requires only a small amount of fossil fuels for its production, being thus a renewable fuel. These positive impacts are particularly noticeable in the air quality improvement of metropolitan areas but also in rural areas where mechanized harvesting of green cane is being introduced, eliminating the burning of sugarcane. Negative impacts such as future large-scale ethanol production from sugarcane might lead to the destruction or damage of high-biodiversity areas, deforestation, degradation or damaging of soils through the use of chemicals and soil decarbonization, water resources contamination or depletion, competition between food and fuel production decreasing food security and a worsening of labor conditions on the fields. These questions are discussed here, with the purpose of clarifying the sustainability aspects of ethanol production from sugarcane mainly in Sao Paulo State, where more than 60% of Brazil's sugarcane plantations are located and are responsible for 62% of ethanol production. (author)

Phytochemical profile of sugarcane and its potential health aspects.

Science.gov (United States)

Singh, Amandeep; Lal, Uma Ranjan; Mukhtar, Hayat Muhammad; Singh, Prabh Simran; Shah, Gagan; Dhawan, Ravi Kumar

2015-01-01

Sugarcane (Saccharum officinarum Linn.) is an important perennial grass of Poaceae family, indigenous to tropical South Asia and Southeast Asia. It is cultivated worldwide due to the economical and medicinal value of its high yielding products. Sugarcane juice is well known as a raw material for the production of refined sugar and its wax is considered as a potential substitute for the expensive carnauba wax, which is of cosmetic and pharmaceutical interest. Refined sugar is the primary product of sugarcane juice, but during its processing, various other valuable products are also obtained in an unrefined form, such as, brown sugar, molasses, and jaggery. Sugarcane juice is widely used in India in the treatment of jaundice, hemorrhage, dysuria, anuria, and other urinary diseases. Herein, we have summarized the different phytoconstituents and health benefits of sugarcane and its valuable products. The phytochemistry of sugarcane wax (obtained from the leaves and stalks of sugarcane), leaves, juice, and its products has revealed the presence of various fatty acid, alcohol, phytosterols, higher terpenoids, flavonoids, -O- and -C-glycosides, and phenolic acids. The future prospective of some of the sugarcane products has been discussed, which needs a phytopharmacological study and has a great potential to be a valuable medicinal product.

Global Warming Potential and Eutrophication Potential of Biofuel Feedstock Crops Produced in Florida, Measured Under Different Scenarios

Energy Technology Data Exchange (ETDEWEB)

Izursa, Jose-Luis; Hanlon, Edward; Amponsah, Nana; Capece, John

2013-02-15

The agriculture sector is in a growing need to develop greenhouse gas (GHG) mitigation techniques to reduce the enhanced greenhouse effect. The challenge to the sector is not only to reduce net emissions but also increase production to meet growing demands for food, fiber, and biofuel. This study focuses on the changes in the GHG balance of three biofuel feedstock (biofuel sugarcane, energy-cane and sweet sorghum) considering changes caused by the adoption of conservationist practices such as reduced tillage, use of controlled-release fertilizers or when cultivation areas are converted from burned harvest to green harvest. Based on the Intergovernmental Panel on Climate Change (IPCC) (2006) balance and the Tools for the Reduction and Assessment of Chemical and Other Environmental Impacts (TRACI) characterization factors published by the EPA, the annual emission balance includes use energy (diesel and electricity), equipment, and ancillary materials, according to the mean annual consumption of supplies per hectare. The total amounts of GWP were 2740, 1791, and 1910 kg CO2e ha-1 y-1 for biofuel sugarcane, energy-cane and sweet sorghum, respectively, when produced with conventional tillage and sugarcane was burned prior to harvesting. Applying reduced tillage practices, the GHG emissions reduced to 13% for biofuel sugarcane, 23% for energy-cane and 8% for sweet sorghum. A similar decrease occurs when a controlled-release fertilizer practice is adopted, which helps reduce the total emission balance in 5%, 12% and 19% for biofuel sugarcane, energy-cane and sweet sorghum, respectively and a 31% average reduction in eutrophication potential. Moreover, the GHG emissions for biofuel sugarcane, with the adoption of green harvest, would result in a smaller GHG balance of 1924 kg CO2e ha-1 y-1, providing an effect strategy for GHG mitigation while still providing a profitable yield in Florida.

Functionally relevant microsatellites in sugarcane unigenes

Directory of Open Access Journals (Sweden)

Singh Nagendra K

2010-11-01

Full Text Available Abstract Background Unigene sequences constitute a rich source of functionally relevant microsatellites. The present study was undertaken to mine the microsatellites in the available unigene sequences of sugarcane for understanding their constitution in the expressed genic component of its complex polyploid/aneuploid genome, assessing their functional significance in silico, determining the extent of allelic diversity at the microsatellite loci and for evaluating their utility in large-scale genotyping applications in sugarcane. Results The average frequency of perfect microsatellite was 1/10.9 kb, while it was 1/44.3 kb for the long and hypervariable class I repeats. GC-rich trinucleotides coding for alanine and the GA-rich dinucleotides were the most abundant microsatellite classes. Out of 15,594 unigenes mined in the study, 767 contained microsatellite repeats and for 672 of these putative functions were determined in silico. The microsatellite repeats were found in the functional domains of proteins encoded by 364 unigenes. Its significance was assessed by establishing the structure-function relationship for the beta-amylase and protein kinase encoding unigenes having repeats in the catalytic domains. A total of 726 allelic variants (7.42 alleles per locus with different repeat lengths were captured precisely for a set of 47 fluorescent dye labeled primers in 36 sugarcane genotypes and five cereal species using the automated fragment analysis system, which suggested the utility of designed primers for rapid, large-scale and high-throughput genotyping applications in sugarcane. Pair-wise similarity ranging from 0.33 to 0.84 with an average of 0.40 revealed a broad genetic base of the Indian varieties in respect of functionally relevant regions of the large and complex sugarcane genome. Conclusion Microsatellite repeats were present in 4.92% of sugarcane unigenes, for most (87.6% of which functions were determined in silico. High level of

XML for catalogers and metadata librarians

CERN Document Server

Cole, Timothy W

2013-01-01

How are today's librarians to manage and describe the everexpanding volumes of resources, in both digital and print formats? The use of XML in cataloging and metadata workflows can improve metadata quality, the consistency of cataloging workflows, and adherence to standards. This book is intended to enable current and future catalogers and metadata librarians to progress beyond a bare surfacelevel acquaintance with XML, thereby enabling them to integrate XML technologies more fully into their cataloging workflows. Building on the wealth of work on library descriptive practices, cataloging, and metadata, XML for Catalogers and Metadata Librarians explores the use of XML to serialize, process, share, and manage library catalog and metadata records. The authors' expert treatment of the topic is written to be accessible to those with little or no prior practical knowledge of or experience with how XML is used. Readers will gain an educated appreciation of the nuances of XML and grasp the benefit of more advanced ...

Security in a Replicated Metadata Catalogue

CERN Document Server

Koblitz, B

2007-01-01

The gLite-AMGA metadata has been developed by NA4 to provide simple relational metadata access for the EGEE user community. As advanced features, which will be the focus of this presentation, AMGA provides very fine-grained security also in connection with the built-in support for replication and federation of metadata. AMGA is extensively used by the biomedical community to store medical images metadata, digital libraries, in HEP for logging and bookkeeping data and in the climate community. The biomedical community intends to deploy a distributed metadata system for medical images consisting of various sites, which range from hospitals to computing centres. Only safe sharing of the highly sensitive metadata as provided in AMGA makes such a scenario possible. Other scenarios are digital libraries, which federate copyright protected (meta-) data into a common catalogue. The biomedical and digital libraries have been deployed using a centralized structure already for some time. They now intend to decentralize ...

Genetic Divergence in Sugarcane Genotypes

OpenAIRE

Tahir, Mohammad; Rahman, Hidayatur; Gul, Rahmani; Ali, Amjad; Khalid, Muhammad

2012-01-01

To assess genetic divergence of sugarcane germplasm, an experiment comprising 25 sugarcane genotypes was conducted at Sugar Crops Research Institute (SCRI), Mardan, Khyber Pakhtunkhwa, Pakistan, in quadruple lattice design during 2008-09. Among the 14 parameters evaluated, majority exhibited significant differences while some showed nonsignificant mean squares. The initial correlation matrix revealed medium to high correlations. Principal Component Analysis (PCA) showed that there were two pr...

Concentration on Callus Induction in Sugarcane

African Journals Online (AJOL)

protocols for in vitro micro propagation of sugarcane through callus culture from foliage leaves (Bugun et al., ... protocol for specific genotypes. Sucrose is the most important type of sugar produced from sugarcane. ... laboratories via plant tissue culture technique. (Lorenzo and Ganzalez, 1998). This allows for an extended ...

Short-term effects of sugarcane waste products from ethanol production plant as soil amendments on sugarcane growth and metal stabilization.

Science.gov (United States)

Akkajit, Pensiri; DeSutter, Thomas; Tongcumpou, Chantra

2013-05-01

Numerous waste products have been widely studied and used as soil amendments and metal immobilizing agents. Waste utilization from ethanol production processes as soil amendments is one of the most promising and sustainable options to help utilize materials effectively, reduce waste disposal, and add value to byproducts. As a consequence, this present work carried out a four-month pot experiment of sugarcane (Saccharum officinarum L.) cultivation in Cd and Zn contaminated soil to determine the effect of three sugarcane waste products (boiler ash, filter cake and vinasse) as soil amendment on sugarcane growth, metal translocation and accumulation in sugarcane, and fractionation of Cd and Zn in soil by the BCR sequential extraction. Four treatments were tested: (1) non-amended soil; (2) 3% w/w boiler ash; (3) 3% w/w filter cake; and (4) a combination of 1.5% boiler ash and 1.5% vinasse (w/w). Our findings showed the improved biomass production of sugarcanes; 6 and 3-fold higher for the above ground parts (from 8.5 to 57.6 g per plant) and root (from 2.1 to 6.59 g per plant), respectively, as compared to non-amended soil. Although there was no significant difference in Cd and Zn uptake in sugarcane (mg kg(-1)) between the non-amended soil and the treated soils (0.44 to 0.52 mg Cd kg(-1) and 39.9 to 48.1 mg Zn kg(-1), respectively), the reduction of the most bioavailable Cd concentration (BCR1 + 2) in the treated soils (35.4-54.5%) and the transformation of metal into an insoluble fraction (BCR3) highlighted the beneficial effects of sugarcane waste-products in promoting the sugarcane growth and Cd stabilization in soil.

Mdmap: A Tool for Metadata Collection and Matching

Directory of Open Access Journals (Sweden)

Rico Simke

2014-10-01

Full Text Available This paper describes a front-end for the semi-automatic collection, matching, and generation of bibliographic metadata obtained from different sources for use within a digitization architecture. The Library of a Billion Words project is building an infrastructure for digitizing text that requires high-quality bibliographic metadata, but currently only sparse metadata from digitized editions is available. The project’s approach is to collect metadata for each digitized item from as many sources as possible. An expert user can then use an intuitive front-end tool to choose matching metadata. The collected metadata are centrally displayed in an interactive grid view. The user can choose which metadata they want to assign to a certain edition, and export these data as MARCXML. This paper presents a new approach to bibliographic work and metadata correction. We try to achieve a high quality of the metadata by generating a large amount of metadata to choose from, as well as by giving librarians an intuitive tool to manage their data.

The essential guide to metadata for books

CERN Document Server

Register, Renee

2013-01-01

In The Essential Guide to Metadata for Books, you will learn exactly what you need to know to effectively generate, handle and disseminate metadata for books and ebooks. This comprehensive but digestible document will explain the life-cycle of book metadata, industry standards, XML, ONIX and the essential elements of metadata. It will also show you how effective, well-organized metadata can improve your efforts to sell a book, especially when it comes to marketing, discoverability and converting at the point of sale. This information-packed document also includes a glossary of terms

Identification of virus isolates inducing mosaic of sugarcane in ...

African Journals Online (AJOL)

Sugarcane mosaic disease caused by sugarcane mosaic virus (SCMV), Johnsongrass mosaic virus (JGMV), maize dwarf mosaic virus (MDMV) and sorghum mosaic Virus (SrMV) is an economically important viral disease of sugarcane worldwide. Field survey was conducted to assess the presence of the viruses involve in ...

Metadata Effectiveness in Internet Discovery: An Analysis of Digital Collection Metadata Elements and Internet Search Engine Keywords

Science.gov (United States)

Yang, Le

2016-01-01

This study analyzed digital item metadata and keywords from Internet search engines to learn what metadata elements actually facilitate discovery of digital collections through Internet keyword searching and how significantly each metadata element affects the discovery of items in a digital repository. The study found that keywords from Internet…

Disease resistance in sugarcane – An overview

Directory of Open Access Journals (Sweden)

A. Ramesh Sundar

2015-12-01

Full Text Available Sugarcane is one of the important commercial crops cultivated world-wide both under tropical and sub-tropical conditions. The crop gains economic importance by virtue of its industrial potential in terms of products like crystal white sugar, bagasse, pressmud, power etc. Among the various production constraints of the crop, diseases are seen as a major threat for sustaining the productivity of sugarcane. Conventional Breeding is a lengthy process and it involves almost more than 10 years for the release of a commercial variety. Many varieties with superior agronomical traits have succumbed to diseases like red rot and smut during the course of cultivation, which hitherto at the time of release were rated to be resistant. The breakdown of disease resistance is attributed to the possible emergence of new virulent pathotypes. This situation has warranted a pertinent need to have a thorough understanding on inheritance pattern and mechanism of disease resistance in sugarcane, which would aid for quick screening of disease resistant clones and successful management of the diseases, respectively. Overall, there is a paradigm shift in the understanding of plant disease resistance, thanks to the advent of robust molecular tools. An integration of the tools of “Omics” namely genomics, proteomics, metabolomics etc. has further strengthened in deciphering plant-pathogen interactions at the molecular level. With the accomplishments in elucidating sugarcane ESTs, which was ably supported by employing the next generation sequencing platforms to unlock the secrets of pathogenomics in sugarcane, it is now made possible to further improve our understanding on disease resistance in sugarcane. Giving the scenario, the future looks evenmore promising, wherein convincing results are in the offing to thoroughly unravel the enigmatic relationship between sugarcane and its important pathogens.

Science friction: data, metadata, and collaboration.

Science.gov (United States)

Edwards, Paul N; Mayernik, Matthew S; Batcheller, Archer L; Bowker, Geoffrey C; Borgman, Christine L

2011-10-01

When scientists from two or more disciplines work together on related problems, they often face what we call 'science friction'. As science becomes more data-driven, collaborative, and interdisciplinary, demand increases for interoperability among data, tools, and services. Metadata--usually viewed simply as 'data about data', describing objects such as books, journal articles, or datasets--serve key roles in interoperability. Yet we find that metadata may be a source of friction between scientific collaborators, impeding data sharing. We propose an alternative view of metadata, focusing on its role in an ephemeral process of scientific communication, rather than as an enduring outcome or product. We report examples of highly useful, yet ad hoc, incomplete, loosely structured, and mutable, descriptions of data found in our ethnographic studies of several large projects in the environmental sciences. Based on this evidence, we argue that while metadata products can be powerful resources, usually they must be supplemented with metadata processes. Metadata-as-process suggests the very large role of the ad hoc, the incomplete, and the unfinished in everyday scientific work.

2G ethanol from the whole sugarcane lignocellulosic biomass.

Science.gov (United States)

Pereira, Sandra Cerqueira; Maehara, Larissa; Machado, Cristina Maria Monteiro; Farinas, Cristiane Sanchez

2015-01-01

In the sugarcane industry, large amounts of lignocellulosic residues are generated, which includes bagasse, straw, and tops. The use of the whole sugarcane lignocellulosic biomass for the production of second-generation (2G) ethanol can be a potential alternative to contribute to the economic viability of this process. Here, we conducted a systematic comparative study of the use of the lignocellulosic residues from the whole sugarcane lignocellulosic biomass (bagasse, straw, and tops) from commercial sugarcane varieties for the production of 2G ethanol. In addition, the feasibility of using a mixture of these residues from a selected variety was also investigated. The materials were pretreated with dilute acid and hydrolyzed with a commercial enzymatic preparation, after which the hydrolysates were fermented using an industrial strain of Saccharomyces cerevisiae. The susceptibility to enzymatic saccharification was higher for the tops, followed by straw and bagasse. Interestingly, the fermentability of the hydrolysates showed a different profile, with straw achieving the highest ethanol yields, followed by tops and bagasse. Using a mixture of the different sugarcane parts (bagasse-straw-tops, 1:1:1, in a dry-weight basis), it was possible to achieve a 55% higher enzymatic conversion and a 25% higher ethanol yield, compared to use of the bagasse alone. For the four commercial sugarcane varieties evaluated using the same experimental set of conditions, it was found that the variety of sugarcane was not a significant factor in the 2G ethanol production process. Assessment of use of the whole lignocellulosic sugarcane biomass clearly showed that 2G ethanol production could be significantly improved by the combined use of bagasse, straw, and tops, when compared to the use of bagasse alone. The lower susceptibility to saccharification of sugarcane bagasse, as well as the lower fermentability of its hydrolysates, can be compensated by using it in combination with straw

Genome Editing in Sugarcane: Challenges ahead

Directory of Open Access Journals (Sweden)

Chakravarthi Mohan

2016-10-01

Full Text Available Genome editing opens new and unique opportunities for researchers to enhance crop production. Until 2013, the zinc finger nucleases (ZFNs and transcription activator-like effector nucleases (TALENs were the key tools used for genome editing applications. The advent of RNA-guided engineered nucleases - the type II clustered regularly interspaced short palindromic repeat (CRISPR/Cas9 (CRISPR-associated system from Streptococcus pyogenes holds great potential since it is simple, effective and more versatile than ZFNs and TALENs. CRISPR/Cas9 system has already been successfully employed in several crop plants. Use of these techniques is in its infant stage in sugarcane. Jung and Altpeter (2016 have reported TALEN mediated approach for the first time to reduce lignin content in sugarcane to make it amenable for biofuel production. This is so far the only report describing genome editing in sugarcane. Large genome size, polyploidy, low transformation efficiency, transgene silencing and lack of high throughput screening techniques are certainly great challenges for genome editing in sugarcane which would be discussed in detail in this review.

CMO: Cruise Metadata Organizer for JAMSTEC Research Cruises

Science.gov (United States)

Fukuda, K.; Saito, H.; Hanafusa, Y.; Vanroosebeke, A.; Kitayama, T.

2011-12-01

JAMSTEC's Data Research Center for Marine-Earth Sciences manages and distributes a wide variety of observational data and samples obtained from JAMSTEC research vessels and deep sea submersibles. Generally, metadata are essential to identify data and samples were obtained. In JAMSTEC, cruise metadata include cruise information such as cruise ID, name of vessel, research theme, and diving information such as dive number, name of submersible and position of diving point. They are submitted by chief scientists of research cruises in the Microsoft Excel° spreadsheet format, and registered into a data management database to confirm receipt of observational data files, cruise summaries, and cruise reports. The cruise metadata are also published via "JAMSTEC Data Site for Research Cruises" within two months after end of cruise. Furthermore, these metadata are distributed with observational data, images and samples via several data and sample distribution websites after a publication moratorium period. However, there are two operational issues in the metadata publishing process. One is that duplication efforts and asynchronous metadata across multiple distribution websites due to manual metadata entry into individual websites by administrators. The other is that differential data types or representation of metadata in each website. To solve those problems, we have developed a cruise metadata organizer (CMO) which allows cruise metadata to be connected from the data management database to several distribution websites. CMO is comprised of three components: an Extensible Markup Language (XML) database, an Enterprise Application Integration (EAI) software, and a web-based interface. The XML database is used because of its flexibility for any change of metadata. Daily differential uptake of metadata from the data management database to the XML database is automatically processed via the EAI software. Some metadata are entered into the XML database using the web

Optimising metadata workflows in a distributed information environment

OpenAIRE

Robertson, R. John; Barton, Jane

2005-01-01

The different purposes present within a distributed information environment create the potential for repositories to enhance their metadata by capitalising on the diversity of metadata available for any given object. This paper presents three conceptual reference models required to achieve this optimisation of metadata workflow: the ecology of repositories, the object lifecycle model, and the metadata lifecycle model. It suggests a methodology for developing the metadata lifecycle model, and ...

Residual biomass potential of commercial and pre-commercial sugarcane cultivars

Directory of Open Access Journals (Sweden)

Marcos Guimarães de Andrade Landell

2013-10-01

Full Text Available Sugarcane (Saccharum spp. is an efficient and sustainable alternative for energy generation compared to non-renewable sources. Currently, during the mechanized harvest process, the straw left in the field can be used in part for the second generation ethanol and increasing the electric energy production. Thus, this study aimed to provide information on the potential for residual biomass cultivars of sugarcane cropping system. This study provides the following information: yield of straw, depending on the calculated leaf area index and the number of tillers per linear meter; primary energy production of several sugarcane genotypes; contribution of dry tops and leaves; biomass yield; and evaluation of fiber, cellulose, hemicellulose and lignin. Preliminary results obtained by researchers of the State of São Paulo, Brazil, and reCviews related studies are presented. The results suggest that the production of sugarcane straw content varies according to the cultivars; the greater mass of sugarcane straw is in the top leaves and that the potential for the crude energy production of sugarcane per area unit can be increased using fiber-rich species or species that produce more straw. The straw indexes was shown to be a good indicator and allow the estimation of straw volumes generated in a sugarcane crop. The cellulose, hemicellulose and lignin composition in sugarcane is distinct among varieties. Therefore, it is possible to develop distinct biomass materials for energy production and for the development of sugarcane mills using biochemical processes and thermal routes.

Sugarcane Bagasse: A Potential Medium for Fungal Cultures

OpenAIRE

Arushdeep Sidana; Umar Farooq

2014-01-01

Worldwide, sugarcane industries produce tons of sugarcane bagasse as residual/waste material. This residual material is rich in complex lignocellulosic substances and may be used as a low cost carbon and energy source for the growth of fungal species. The present work was aimed at designing a sugarcane waste-based medium as a substitute for expensive commercial media for growing fungal cultures. Eight species of fungi, namely, Aspergillus niger, Candida albicans, Saccharomyces cerevisiae, Fus...

The aptitude of the soils for the production of sugarcane. Part 2: Comparison of two methods at ‘Ciudad Caracas’ sugarcane mill

Directory of Open Access Journals (Sweden)

Nelson C. Arzola Pina

2015-03-01

Full Text Available The object of this study was to compare two methods for determining the aptitude of soils for growing Sugarcane in Cuba. The information was provided by three sugarcane farms owned by Ciudad Caracas sugarcane mill in the municipality of Santa Isabel de Las Lajas in Cienfuegos. The information of the soils from each farm was taken from the 1:25 000 scale cadastral maps designed by Ministerio de la Agricultura (MINAG. Rainfall data was collected from the nearby stations rain gauges. And the sugarcane yield was reported by each farm. The aptitude of the soils was determined by two methods (AGRO 24 de 1993 y Arzola de 1999 using the information available. Results showed that both methods are appropriate for selecting soils with higher productive potential, and are a useful tool for making right decisions for optimizing the land use at each sugarcane farm.

Ethanol production using hemicellulosic hydrolyzate and sugarcane ...

African Journals Online (AJOL)

The use of vegetable biomass as substrate for ethanol production could reduce the existing usage of fossil fuels, thereby minimizing negative environmental impacts. Due to mechanical harvesting of sugarcane, the amount of pointer and straw has increased in sugarcane fields, becoming inputs of great energy potential.

Ethanol production using hemicellulosic hydrolyzate and sugarcane ...

African Journals Online (AJOL)

Juliana

2015-02-11

Feb 11, 2015 ... The use of vegetable biomass as substrate for ethanol production could reduce the ... Fermentation was performed in a laboratory scale using the J10 and FT858 ... Key words: Hydrolysis of sugarcane straw and pointers, sugarcane juice, ..... Ethanol: An Overview about Composition, Pretreatment Methods,.

Metadata in Scientific Dialects

Science.gov (United States)

Habermann, T.

2011-12-01

Discussions of standards in the scientific community have been compared to religious wars for many years. The only things scientists agree on in these battles are either "standards are not useful" or "everyone can benefit from using my standard". Instead of achieving the goal of facilitating interoperable communities, in many cases the standards have served to build yet another barrier between communities. Some important progress towards diminishing these obstacles has been made in the data layer with the merger of the NetCDF and HDF scientific data formats. The universal adoption of XML as the standard for representing metadata and the recent adoption of ISO metadata standards by many groups around the world suggests that similar convergence is underway in the metadata layer. At the same time, scientists and tools will likely need support for native tongues for some time. I will describe an approach that combines re-usable metadata "components" and restful web services that provide those components in many dialects. This approach uses advanced XML concepts of referencing and linking to construct complete records that include reusable components and builds on the ISO Standards as the "unabridged dictionary" that encompasses the content of many other dialects.

Metadata Wizard: an easy-to-use tool for creating FGDC-CSDGM metadata for geospatial datasets in ESRI ArcGIS Desktop

Science.gov (United States)

Ignizio, Drew A.; O'Donnell, Michael S.; Talbert, Colin B.

2014-01-01

Creating compliant metadata for scientific data products is mandated for all federal Geographic Information Systems professionals and is a best practice for members of the geospatial data community. However, the complexity of the The Federal Geographic Data Committee’s Content Standards for Digital Geospatial Metadata, the limited availability of easy-to-use tools, and recent changes in the ESRI software environment continue to make metadata creation a challenge. Staff at the U.S. Geological Survey Fort Collins Science Center have developed a Python toolbox for ESRI ArcDesktop to facilitate a semi-automated workflow to create and update metadata records in ESRI’s 10.x software. The U.S. Geological Survey Metadata Wizard tool automatically populates several metadata elements: the spatial reference, spatial extent, geospatial presentation format, vector feature count or raster column/row count, native system/processing environment, and the metadata creation date. Once the software auto-populates these elements, users can easily add attribute definitions and other relevant information in a simple Graphical User Interface. The tool, which offers a simple design free of esoteric metadata language, has the potential to save many government and non-government organizations a significant amount of time and costs by facilitating the development of The Federal Geographic Data Committee’s Content Standards for Digital Geospatial Metadata compliant metadata for ESRI software users. A working version of the tool is now available for ESRI ArcDesktop, version 10.0, 10.1, and 10.2 (downloadable at http:/www.sciencebase.gov/metadatawizard).

Inheritance rules for Hierarchical Metadata Based on ISO 19115

Science.gov (United States)

Zabala, A.; Masó, J.; Pons, X.

2012-04-01

Mainly, ISO19115 has been used to describe metadata for datasets and services. Furthermore, ISO19115 standard (as well as the new draft ISO19115-1) includes a conceptual model that allows to describe metadata at different levels of granularity structured in hierarchical levels, both in aggregated resources such as particularly series, datasets, and also in more disaggregated resources such as types of entities (feature type), types of attributes (attribute type), entities (feature instances) and attributes (attribute instances). In theory, to apply a complete metadata structure to all hierarchical levels of metadata, from the whole series to an individual feature attributes, is possible, but to store all metadata at all levels is completely impractical. An inheritance mechanism is needed to store each metadata and quality information at the optimum hierarchical level and to allow an ease and efficient documentation of metadata in both an Earth observation scenario such as a multi-satellite mission multiband imagery, as well as in a complex vector topographical map that includes several feature types separated in layers (e.g. administrative limits, contour lines, edification polygons, road lines, etc). Moreover, and due to the traditional split of maps in tiles due to map handling at detailed scales or due to the satellite characteristics, each of the previous thematic layers (e.g. 1:5000 roads for a country) or band (Landsat-5 TM cover of the Earth) are tiled on several parts (sheets or scenes respectively). According to hierarchy in ISO 19115, the definition of general metadata can be supplemented by spatially specific metadata that, when required, either inherits or overrides the general case (G.1.3). Annex H of this standard states that only metadata exceptions are defined at lower levels, so it is not necessary to generate the full registry of metadata for each level but to link particular values to the general value that they inherit. Conceptually the metadata

The Machinic Temporality of Metadata

Directory of Open Access Journals (Sweden)

Claudio Celis

2015-03-01

Full Text Available In 1990 Deleuze introduced the hypothesis that disciplinary societies are gradually being replaced by a new logic of power: control. Accordingly, Matteo Pasquinelli has recently argued that we are moving towards societies of metadata, which correspond to a new stage of what Deleuze called control societies. Societies of metadata are characterised for the central role that meta-information acquires both as a source of surplus value and as an apparatus of social control. The aim of this article is to develop Pasquinelli’s thesis by examining the temporal scope of these emerging societies of metadata. In particular, this article employs Guattari’s distinction between human and machinic times. Through these two concepts, this article attempts to show how societies of metadata combine the two poles of capitalist power formations as identified by Deleuze and Guattari, i.e. social subjection and machinic enslavement. It begins by presenting the notion of metadata in order to identify some of the defining traits of contemporary capitalism. It then examines Berardi’s account of the temporality of the attention economy from the perspective of the asymmetric relation between cyber-time and human time. The third section challenges Berardi’s definition of the temporality of the attention economy by using Guattari’s notions of human and machinic times. Parts four and five fall back upon Deleuze and Guattari’s notions of machinic surplus labour and machinic enslavement, respectively. The concluding section tries to show that machinic and human times constitute two poles of contemporary power formations that articulate the temporal dimension of societies of metadata.

Incorporating ISO Metadata Using HDF Product Designer

Science.gov (United States)

Jelenak, Aleksandar; Kozimor, John; Habermann, Ted

2016-01-01

The need to store in HDF5 files increasing amounts of metadata of various complexity is greatly overcoming the capabilities of the Earth science metadata conventions currently in use. Data producers until now did not have much choice but to come up with ad hoc solutions to this challenge. Such solutions, in turn, pose a wide range of issues for data managers, distributors, and, ultimately, data users. The HDF Group is experimenting on a novel approach of using ISO 19115 metadata objects as a catch-all container for all the metadata that cannot be fitted into the current Earth science data conventions. This presentation will showcase how the HDF Product Designer software can be utilized to help data producers include various ISO metadata objects in their products.

Sugarcane boiler ash as an amendment for soilless growing media

Science.gov (United States)

In 2016, research was conducted to investigate the use of sugarcane bagasse ash (SBA) as an amendment to soilless planting media for the production of vegetable seedlings. Typically, the eleven Louisiana sugarcane mills use a portion of the sugarcane bagasse for fuel, producing over 60,000 tons of S...

Vegetable seedling production with sugarcane bagasse ash

Science.gov (United States)

The eleven sugarcane mills in Louisiana processed 380,000 ac and 12.8 million tons of harvested sugarcane in 2014, producing 1.5 million tons of raw sugar (brown sugar), and an estimated 3 million tons of the fibrous plant residue called bagasse. Bagasse is the fibrous material remaining after remov...

Evaluating the privacy properties of telephone metadata

Science.gov (United States)

Mayer, Jonathan; Mutchler, Patrick; Mitchell, John C.

2016-01-01

Since 2013, a stream of disclosures has prompted reconsideration of surveillance law and policy. One of the most controversial principles, both in the United States and abroad, is that communications metadata receives substantially less protection than communications content. Several nations currently collect telephone metadata in bulk, including on their own citizens. In this paper, we attempt to shed light on the privacy properties of telephone metadata. Using a crowdsourcing methodology, we demonstrate that telephone metadata is densely interconnected, can trivially be reidentified, and can be used to draw sensitive inferences. PMID:27185922

Integrated management of bermudagrass (Cynodon dactylon) in sugarcane

Science.gov (United States)

Bermudagrass is a difficult perennial weed to manage in Louisiana sugarcane. Research was conducted to compare interrow tillage practice, postharvest residue management, and herbicide placement on bermudagrass proliferation and sugarcane yield. Tillage frequencies included conventional (four tillage...

U.S. EPA Metadata Editor (EME)

Data.gov (United States)

U.S. Environmental Protection Agency — The EPA Metadata Editor (EME) allows users to create geospatial metadata that meets EPA's requirements. The tool has been developed as a desktop application that...

Making Interoperability Easier with the NASA Metadata Management Tool

Science.gov (United States)

Shum, D.; Reese, M.; Pilone, D.; Mitchell, A. E.

2016-12-01

ISO 19115 has enabled interoperability amongst tools, yet many users find it hard to build ISO metadata for their collections because it can be large and overly flexible for their needs. The Metadata Management Tool (MMT), part of NASA's Earth Observing System Data and Information System (EOSDIS), offers users a modern, easy to use browser based tool to develop ISO compliant metadata. Through a simplified UI experience, metadata curators can create and edit collections without any understanding of the complex ISO-19115 format, while still generating compliant metadata. The MMT is also able to assess the completeness of collection level metadata by evaluating it against a variety of metadata standards. The tool provides users with clear guidance as to how to change their metadata in order to improve their quality and compliance. It is based on NASA's Unified Metadata Model for Collections (UMM-C) which is a simpler metadata model which can be cleanly mapped to ISO 19115. This allows metadata authors and curators to meet ISO compliance requirements faster and more accurately. The MMT and UMM-C have been developed in an agile fashion, with recurring end user tests and reviews to continually refine the tool, the model and the ISO mappings. This process is allowing for continual improvement and evolution to meet the community's needs.

Geospatial metadata retrieval from web services

Directory of Open Access Journals (Sweden)

Ivanildo Barbosa

Full Text Available Nowadays, producers of geospatial data in either raster or vector formats are able to make them available on the World Wide Web by deploying web services that enable users to access and query on those contents even without specific software for geoprocessing. Several providers around the world have deployed instances of WMS (Web Map Service, WFS (Web Feature Service and WCS (Web Coverage Service, all of them specified by the Open Geospatial Consortium (OGC. In consequence, metadata about the available contents can be retrieved to be compared with similar offline datasets from other sources. This paper presents a brief summary and describes the matching process between the specifications for OGC web services (WMS, WFS and WCS and the specifications for metadata required by the ISO 19115 - adopted as reference for several national metadata profiles, including the Brazilian one. This process focuses on retrieving metadata about the identification and data quality packages as well as indicates the directions to retrieve metadata related to other packages. Therefore, users are able to assess whether the provided contents fit to their purposes.

Evaluation of the juice brix of wild sugarcanes (Saccharum spontaneum indigenous to Japan

Directory of Open Access Journals (Sweden)

Takeo Sakaigaichi

2016-04-01

Full Text Available Modern sugarcane cultivars are derived from the interspecific crossing between Saccharum officinarum and wild sugarcane, Saccharum spontaneum. The introgression of valuable characteristics from wild sugarcane is recognized as extremely important, but this process typically requires long-term effort over multiple generations of backcrosses owing to the low sugar content of the initial interspecific hybrids. In this study, we aimed to identify Japanese wild sugarcanes with high juice brix in order to promote effective interspecific crossing of sugarcane. Sixty-four accessions from the Nansei Islands and 70 accessions from the Honshu were evaluated for juice brix. Wild sugarcanes with high juice brix were demonstrated to exist among wild sugarcanes indigenous to the Honshu. A significant difference was observed between the median juice brix values of wild sugarcanes of the Nansei Islands and those of the Honshu. The relationship between juice brix and stem traits was then examined in 20 wild sugarcanes, 10 each from the Nansei Islands and the Honshu. The reproducibility of juice brix value in both experiments was confirmed. In contrast to juice brix, stem traits, such as length, diameter, and volume, were typically smaller in wild sugarcanes from the Honshu. Moreover, a negative correlation was observed between the index of stem volume and juice brix. In this study, we identified outstanding wild sugarcanes with high juice brix. Using germplasms from the identified wild sugarcanes in interspecific crossing could contribute to the increases in both yield and sugar content.

Metadata and Service at the GFZ ISDC Portal

Science.gov (United States)

Ritschel, B.

2008-05-01

The online service portal of the GFZ Potsdam Information System and Data Center (ISDC) is an access point for all manner of geoscientific geodata, its corresponding metadata, scientific documentation and software tools. At present almost 2000 national and international users and user groups have the opportunity to request Earth science data from a portfolio of 275 different products types and more than 20 Million single data files with an added volume of approximately 12 TByte. The majority of the data and information, the portal currently offers to the public, are global geomonitoring products such as satellite orbit and Earth gravity field data as well as geomagnetic and atmospheric data for the exploration. These products for Earths changing system are provided via state-of-the art retrieval techniques. The data product catalog system behind these techniques is based on the extensive usage of standardized metadata, which are describing the different geoscientific product types and data products in an uniform way. Where as all ISDC product types are specified by NASA's Directory Interchange Format (DIF), Version 9.0 Parent XML DIF metadata files, the individual data files are described by extended DIF metadata documents. Depending on the beginning of the scientific project, one part of data files are described by extended DIF, Version 6 metadata documents and the other part are specified by data Child XML DIF metadata documents. Both, the product type dependent parent DIF metadata documents and the data file dependent child DIF metadata documents are derived from a base-DIF.xsd xml schema file. The ISDC metadata philosophy defines a geoscientific product as a package consisting of mostly one or sometimes more than one data file plus one extended DIF metadata file. Because NASA's DIF metadata standard has been developed in order to specify a collection of data only, the extension of the DIF standard consists of new and specific attributes, which are necessary for

The PDS4 Metadata Management System

Science.gov (United States)

Raugh, A. C.; Hughes, J. S.

2018-04-01

We present the key features of the Planetary Data System (PDS) PDS4 Information Model as an extendable metadata management system for planetary metadata related to data structure, analysis/interpretation, and provenance.

Impact of biotechnology on sugarcane agriculture and industry

Science.gov (United States)

There are nine key issues that can influence the productivity and sustainability of the sugarcane industry. These include land, soil fertility, water, variety, planting density, crop protection, cultural practices, harvesting and processing, and information technology. To all sugarcane farmers, it r...

2G ethanol from the whole sugarcane lignocellulosic biomass

OpenAIRE

Pereira, Sandra Cerqueira; Maehara, Larissa; Machado, Cristina Maria Monteiro; Farinas, Cristiane Sanchez

2015-01-01

Background In the sugarcane industry, large amounts of lignocellulosic residues are generated, which includes bagasse, straw, and tops. The use of the whole sugarcane lignocellulosic biomass for the production of second-generation (2G) ethanol can be a potential alternative to contribute to the economic viability of this process. Here, we conducted a systematic comparative study of the use of the lignocellulosic residues from the whole sugarcane lignocellulosic biomass (bagasse, straw, and to...

Data, Metadata, and Ted

OpenAIRE

Borgman, Christine L.

2014-01-01

Ted Nelson coined the term “hypertext” and developed Xanadu in a universe parallel to the one in which librarians, archivists, and documentalists were creating metadata to establish cross-connections among the myriad topics of this world. When these universes collided, comets exploded as ontologies proliferated. Black holes were formed as data disappeared through lack of description. Today these universes coexist, each informing the other, if not always happily: the formal rules of metadata, ...

Handbook of metadata, semantics and ontologies

CERN Document Server

Sicilia, Miguel-Angel

2013-01-01

Metadata research has emerged as a discipline cross-cutting many domains, focused on the provision of distributed descriptions (often called annotations) to Web resources or applications. Such associated descriptions are supposed to serve as a foundation for advanced services in many application areas, including search and location, personalization, federation of repositories and automated delivery of information. Indeed, the Semantic Web is in itself a concrete technological framework for ontology-based metadata. For example, Web-based social networking requires metadata describing people and

Impact of sugarcane field residue and mill bagasse on seed germination

Science.gov (United States)

Research indicates that sugarcane field residue and sugarcane mill bagasse may be allelopathic. Allelopathy is the chemical interaction between plants, which may result in the inhibition of plant growth and development. Previous research in Louisiana indicated that sugarcane field residue may inhibi...

Pembuatan Aplikasi Metadata Generator untuk Koleksi Peninggalan Warisan Budaya

Directory of Open Access Journals (Sweden)

Wimba Agra Wicesa

2017-03-01

Full Text Available Warisan budaya merupakan suatu aset penting yang digunakan sebagai sumber informasi dalam mempelajari ilmu sejarah. Mengelola data warisan budaya menjadi suatu hal yang harus diperhatikan guna menjaga keutuhan data warisan budaya di masa depan. Menciptakan sebuah metadata warisan budaya merupakan salah satu langkah yang dapat diambil untuk menjaga nilai dari sebuah artefak. Dengan menggunakan konsep metadata, informasi dari setiap objek warisan budaya tersebut menjadi mudah untuk dibaca, dikelola, maupun dicari kembali meskipun telah tersimpan lama. Selain itu dengan menggunakan konsep metadata, informasi tentang warisan budaya dapat digunakan oleh banyak sistem. Metadata warisan budaya merupakan metadata yang cukup besar. Sehingga untuk membangun metada warisan budaya dibutuhkan waktu yang cukup lama. Selain itu kesalahan (human error juga dapat menghambat proses pembangunan metadata warisan budaya. Proses pembangkitan metadata warisan budaya melalui Aplikasi Metadata Generator menjadi lebih cepat dan mudah karena dilakukan secara otomatis oleh sistem. Aplikasi ini juga dapat menekan human error sehingga proses pembangkitan menjadi lebih efisien.

Evolving Metadata in NASA Earth Science Data Systems

Science.gov (United States)

Mitchell, A.; Cechini, M. F.; Walter, J.

2011-12-01

NASA's Earth Observing System (EOS) is a coordinated series of satellites for long term global observations. NASA's Earth Observing System Data and Information System (EOSDIS) is a petabyte-scale archive of environmental data that supports global climate change research by providing end-to-end services from EOS instrument data collection to science data processing to full access to EOS and other earth science data. On a daily basis, the EOSDIS ingests, processes, archives and distributes over 3 terabytes of data from NASA's Earth Science missions representing over 3500 data products ranging from various types of science disciplines. EOSDIS is currently comprised of 12 discipline specific data centers that are collocated with centers of science discipline expertise. Metadata is used in all aspects of NASA's Earth Science data lifecycle from the initial measurement gathering to the accessing of data products. Missions use metadata in their science data products when describing information such as the instrument/sensor, operational plan, and geographically region. Acting as the curator of the data products, data centers employ metadata for preservation, access and manipulation of data. EOSDIS provides a centralized metadata repository called the Earth Observing System (EOS) ClearingHouse (ECHO) for data discovery and access via a service-oriented-architecture (SOA) between data centers and science data users. ECHO receives inventory metadata from data centers who generate metadata files that complies with the ECHO Metadata Model. NASA's Earth Science Data and Information System (ESDIS) Project established a Tiger Team to study and make recommendations regarding the adoption of the international metadata standard ISO 19115 in EOSDIS. The result was a technical report recommending an evolution of NASA data systems towards a consistent application of ISO 19115 and related standards including the creation of a NASA-specific convention for core ISO 19115 elements. Part of

The XML Metadata Editor of GFZ Data Services

Science.gov (United States)

Ulbricht, Damian; Elger, Kirsten; Tesei, Telemaco; Trippanera, Daniele

2017-04-01

Following the FAIR data principles, research data should be Findable, Accessible, Interoperable and Reuseable. Publishing data under these principles requires to assign persistent identifiers to the data and to generate rich machine-actionable metadata. To increase the interoperability, metadata should include shared vocabularies and crosslink the newly published (meta)data and related material. However, structured metadata formats tend to be complex and are not intended to be generated by individual scientists. Software solutions are needed that support scientists in providing metadata describing their data. To facilitate data publication activities of 'GFZ Data Services', we programmed an XML metadata editor that assists scientists to create metadata in different schemata popular in the earth sciences (ISO19115, DIF, DataCite), while being at the same time usable by and understandable for scientists. Emphasis is placed on removing barriers, in particular the editor is publicly available on the internet without registration [1] and the scientists are not requested to provide information that may be generated automatically (e.g. the URL of a specific licence or the contact information of the metadata distributor). Metadata are stored in browser cookies and a copy can be saved to the local hard disk. To improve usability, form fields are translated into the scientific language, e.g. 'creators' of the DataCite schema are called 'authors'. To assist filling in the form, we make use of drop down menus for small vocabulary lists and offer a search facility for large thesauri. Explanations to form fields and definitions of vocabulary terms are provided in pop-up windows and a full documentation is available for download via the help menu. In addition, multiple geospatial references can be entered via an interactive mapping tool, which helps to minimize problems with different conventions to provide latitudes and longitudes. Currently, we are extending the metadata editor

Improving Metadata Compliance for Earth Science Data Records

Science.gov (United States)

Armstrong, E. M.; Chang, O.; Foster, D.

2014-12-01

One of the recurring challenges of creating earth science data records is to ensure a consistent level of metadata compliance at the granule level where important details of contents, provenance, producer, and data references are necessary to obtain a sufficient level of understanding. These details are important not just for individual data consumers but also for autonomous software systems. Two of the most popular metadata standards at the granule level are the Climate and Forecast (CF) Metadata Conventions and the Attribute Conventions for Dataset Discovery (ACDD). Many data producers have implemented one or both of these models including the Group for High Resolution Sea Surface Temperature (GHRSST) for their global SST products and the Ocean Biology Processing Group for NASA ocean color and SST products. While both the CF and ACDD models contain various level of metadata richness, the actual "required" attributes are quite small in number. Metadata at the granule level becomes much more useful when recommended or optional attributes are implemented that document spatial and temporal ranges, lineage and provenance, sources, keywords, and references etc. In this presentation we report on a new open source tool to check the compliance of netCDF and HDF5 granules to the CF and ACCD metadata models. The tool, written in Python, was originally implemented to support metadata compliance for netCDF records as part of the NOAA's Integrated Ocean Observing System. It outputs standardized scoring for metadata compliance for both CF and ACDD, produces an objective summary weight, and can be implemented for remote records via OPeNDAP calls. Originally a command-line tool, we have extended it to provide a user-friendly web interface. Reports on metadata testing are grouped in hierarchies that make it easier to track flaws and inconsistencies in the record. We have also extended it to support explicit metadata structures and semantic syntax for the GHRSST project that can be

Handling multiple metadata streams regarding digital learning material

NARCIS (Netherlands)

Roes, J.B.M.; Vuuren, J. van; Verbeij, N.; Nijstad, H.

2010-01-01

This paper presents the outcome of a study performed in the Netherlands on handling multiple metadata streams regarding digital learning material. The paper describes the present metadata architecture in the Netherlands, the present suppliers and users of metadata and digital learning materials. It

On the Origin of Metadata

Directory of Open Access Journals (Sweden)

Sam Coppens

2012-12-01

Full Text Available Metadata has been around and has evolved for centuries, albeit not recognized as such. Medieval manuscripts typically had illuminations at the start of each chapter, being both a kind of signature for the author writing the script and a pictorial chapter anchor for the illiterates at the time. Nowadays, there is so much fragmented information on the Internet that users sometimes fail to distinguish the real facts from some bended truth, let alone being able to interconnect different facts. Here, the metadata can both act as noise-reductors for detailed recommendations to the end-users, as it can be the catalyst to interconnect related information. Over time, metadata thus not only has had different modes of information, but furthermore, metadata’s relation of information to meaning, i.e., “semantics”, evolved. Darwin’s evolutionary propositions, from “species have an unlimited reproductive capacity”, over “natural selection”, to “the cooperation of mutations leads to adaptation to the environment” show remarkable parallels to both metadata’s different modes of information and to its relation of information to meaning over time. In this paper, we will show that the evolution of the use of (metadata can be mapped to Darwin’s nine evolutionary propositions. As mankind and its behavior are products of an evolutionary process, the evolutionary process of metadata with its different modes of information is on the verge of a new-semantic-era.

Agrobiodiversity endangered by sugarcane farming in Mumias and ...

African Journals Online (AJOL)

user

Victoria basin of Kenya and Uganda. In Kenya sugarcane is commercially grown in Western and Nyanza provinces, primarily by small scale farmers followed by large-scale farmers and company/factory nucleus estates (Gok,. 2002). While setting up infrastructure for sugarcane farming and processing, minimal input is ...

Developing Cyberinfrastructure Tools and Services for Metadata Quality Evaluation

Science.gov (United States)

Mecum, B.; Gordon, S.; Habermann, T.; Jones, M. B.; Leinfelder, B.; Powers, L. A.; Slaughter, P.

2016-12-01

Metadata and data quality are at the core of reusable and reproducible science. While great progress has been made over the years, much of the metadata collected only addresses data discovery, covering concepts such as titles and keywords. Improving metadata beyond the discoverability plateau means documenting detailed concepts within the data such as sampling protocols, instrumentation used, and variables measured. Given that metadata commonly do not describe their data at this level, how might we improve the state of things? Giving scientists and data managers easy to use tools to evaluate metadata quality that utilize community-driven recommendations is the key to producing high-quality metadata. To achieve this goal, we created a set of cyberinfrastructure tools and services that integrate with existing metadata and data curation workflows which can be used to improve metadata and data quality across the sciences. These tools work across metadata dialects (e.g., ISO19115, FGDC, EML, etc.) and can be used to assess aspects of quality beyond what is internal to the metadata such as the congruence between the metadata and the data it describes. The system makes use of a user-friendly mechanism for expressing a suite of checks as code in popular data science programming languages such as Python and R. This reduces the burden on scientists and data managers to learn yet another language. We demonstrated these services and tools in three ways. First, we evaluated a large corpus of datasets in the DataONE federation of data repositories against a metadata recommendation modeled after existing recommendations such as the LTER best practices and the Attribute Convention for Dataset Discovery (ACDD). Second, we showed how this service can be used to display metadata and data quality information to data producers during the data submission and metadata creation process, and to data consumers through data catalog search and access tools. Third, we showed how the centrally

From CLARIN Component Metadata to Linked Open Data

NARCIS (Netherlands)

Durco, M.; Windhouwer, Menzo

2014-01-01

In the European CLARIN infrastructure a growing number of resources are described with Component Metadata. In this paper we describe a transformation to make this metadata available as linked data. After this first step it becomes possible to connect the CLARIN Component Metadata with other valuable

Crop rotation biomass and arbuscular mycorrhizal fungi effects on sugarcane yield

Energy Technology Data Exchange (ETDEWEB)

Ambrosano, Edmilson Jose; Rossi, Fabricio; Guirado, Nivaldo; Teramoto, Juliana Rolim Salome [Agencia Paulista de Tecnologia dos Agronegocios (APTA), Piracicaba, SP (Brazil). Polo Regional Centro Sul; Azcon, Rozario [Consejo Superior de Investigaciones Cientificas (CSIC), Granada (Spain). Estacao Experimental de Zaidin; Cantarela, Heitor [Agencia Paulista de Tecnologia dos Agronegocios (APTA/IAC), Campinas, SP (Brazil). Inst. Agronomico. Centro de Solos e Recursos Ambientais; Ambrosano, Glaucia Maria Bovi [Universidade Estadual de Campinas (UNICAMP), Piracicaba, SP (Brazil). Fac. de Odontologia. Dept. de Odontologia Social], Email: ambrosano@apta.sp.gov.br; Schammass, Eliana Aparecida [Agencia Paulista de Tecnologia dos Agronegocios (APTA/IZ), Nova Odessa, SP (Brazil). Inst. de Zootecnia; Muraoka, Takashi; Trivelin, Paulo Cesar Ocheuze [Centro de Energia Nuclear na Agricultura (CENA/USP), Piracicaba, SP (Brazil); Ungaro, Maria Regina Goncalves [Agencia Paulista de Tecnologia dos Agronegocios (APTA/IAC), Campinas, SP (Brazil). Inst. Agronomico. Centro de Plantas Graniferas

2010-07-01

Sugarcane (Saccharum spp.) is an important crop for sugar production and agro-energy purposes in Brazil. In the sugarcane production system after a 4- to 8-year cycle crop rotation may be used before replanting sugarcane to improve soil conditions and give an extra income. This study had the objective of characterizing the biomass and the natural colonization of arbuscular mycorrhizal fungi (AMF) of leguminous green manure and sunflower (Helianthus annuus L.) in rotation with sugarcane. Their effect on stalk and sugar yield of sugarcane cv. IAC 87-3396 grown subsequently was also studied. Cane yield was harvested in three subsequent cuttings. Peanut cv. IAC-Caiapo, sunflower cv. IAC-Uruguai and velvet bean (Mucuna aterrimum Piper and Tracy) were the rotational crops that resulted in the greater percentage of AMF. Sunflower was the specie that most extracted nutrients from the soil, followed by peanut cv. IAC-Tatu and mung bean (Vigna radiata L. Wilczek). The colonization with AMF had a positive correlation with sugarcane plant height, at the first cut (p = 0.01 and R = 0.52) but not with the stalk or cane yields. Sunflower was the rotational crop that brought about the greatest yield increase of the subsequent sugarcane crop: 46% increase in stalk yield and 50% in sugar yield compared with the control. Except for both peanut varieties, all rotational crops caused an increase in net income of the cropping system in the average of three sugarcane harvests. (author)

Collection Metadata Solutions for Digital Library Applications

Science.gov (United States)

Hill, Linda L.; Janee, Greg; Dolin, Ron; Frew, James; Larsgaard, Mary

1999-01-01

Within a digital library, collections may range from an ad hoc set of objects that serve a temporary purpose to established library collections intended to persist through time. The objects in these collections vary widely, from library and data center holdings to pointers to real-world objects, such as geographic places, and the various metadata schemas that describe them. The key to integrated use of such a variety of collections in a digital library is collection metadata that represents the inherent and contextual characteristics of a collection. The Alexandria Digital Library (ADL) Project has designed and implemented collection metadata for several purposes: in XML form, the collection metadata "registers" the collection with the user interface client; in HTML form, it is used for user documentation; eventually, it will be used to describe the collection to network search agents; and it is used for internal collection management, including mapping the object metadata attributes to the common search parameters of the system.

611 A QUANTITATIVE ESTIMATE OF WEEDS OF SUGARCANE ...

African Journals Online (AJOL)

Osondu

Abstract. A survey was conducted in the sugarcane fields of Unilorin Sugar Research Institute, Ilorin in the southern. Guinea savanna agro-ecological zone of Nigeria during 2011 and 2012 cropping seasons with an objective to identify the current status of prevalent weeds in rainfed and irrigated sugarcane fields. A.

Cold alkaline extraction as a pretreatment for bioethanol production from eucalyptus, sugarcane bagasse and sugarcane straw

International Nuclear Information System (INIS)

Carvalho, Danila Morais de; Sevastyanova, Olena; Queiroz, José Humberto de; Colodette, Jorge Luiz

2016-01-01

Highlights: • Mathematical approach to optimize the process of cold alkaline extraction. • Hemicelluloses and lignin removal from biomasses by cold alkaline extraction. • Higher xylan and lignin removal for straw during pretreatment. • Formation of pseudo-extractives for eucalyptus during pretreatment. • Higher ethanol production for pretreated sugarcane straw. - Abstract: Optimal conditions for the cold alkaline extraction (CAE) pretreatment of eucalyptus, sugarcane bagasse and sugarcane straw are proposed in view of their subsequent bioconversion into ethanol through the semi-simultaneous saccharification and fermentation (SSSF) process (with presaccharification followed by simultaneous saccharification and fermentation, or SSF). The optimum conditions, which are identified based on an experiment with a factorial central composite design, resulted in the removal of 46%, 52% and 61% of the xylan and 15%, 37% and 45% of the lignin for eucalyptus, bagasse and straw, respectively. The formation of pseudo-extractives was observed during the CAE of eucalyptus. Despite the similar glucose concentration and yield for all biomasses after 12 h of presaccharification, the highest yield (0.065 g_e_t_h_a_n_o_l/g_b_i_o_m_a_s_s), concentrations (5.74 g L"−"1) and volumetric productivity for ethanol (0.57 g L"−"1 h"−"1) were observed for the sugarcane straw. This finding was most likely related to the improved accessibility of cellulose that resulted from the removal of the largest amount of xylan and lignin.

Life cycle assessment of biofuels from an integrated Brazilian algae-sugarcane biorefinery

International Nuclear Information System (INIS)

Souza, Simone P.; Gopal, Anand R.; Seabra, Joaquim E.A.

2015-01-01

Sugarcane ethanol biorefineries in Brazil produce carbon dioxide, electricity and heat as byproducts. These are essential inputs for algae biodiesel production. In this paper, we assessed ethanol's life cycle greenhouse gas emissions and fossil energy use produced in an integrated sugarcane and algae biorefinery where biodiesel replaces petroleum diesel for all agricultural operations. Carbon dioxide from cane juice fermentation is used as the carbon source for algae cultivation, and sugarcane bagasse is the sole source of energy for the entire facility. Glycerin produced from the biodiesel plant is consumed by algae during the mixotrophic growth phase. We assessed the uncertainties through a detailed Monte-Carlo analysis. We found that this integrated system can improve both the life cycle greenhouse gas emissions and the fossil energy use of sugarcane ethanol by around 10% and 50%, respectively, compared to a traditional Brazilian sugarcane ethanol distillery. - Highlights: • A high diesel consumption is associated to the ethanol sugarcane life-cycle. • Sugarcane industry can provide sources of carbon and energy for the algae growing. • The sugarcane-algae integration can improve the ethanol life-cycle performance. • This integration is a promising pathway for the deployment of algae biodiesel. • There are still significant techno-economic barriers associated with algae biodiesel

Study on high-level waste geological disposal metadata model

International Nuclear Information System (INIS)

Ding Xiaobin; Wang Changhong; Zhu Hehua; Li Xiaojun

2008-01-01

This paper expatiated the concept of metadata and its researches within china and abroad, then explain why start the study on the metadata model of high-level nuclear waste deep geological disposal project. As reference to GML, the author first set up DML under the framework of digital underground space engineering. Based on DML, a standardized metadata employed in high-level nuclear waste deep geological disposal project is presented. Then, a Metadata Model with the utilization of internet is put forward. With the standardized data and CSW services, this model may solve the problem in the data sharing and exchanging of different data form A metadata editor is build up in order to search and maintain metadata based on this model. (authors)

Computational identification and analysis of novel sugarcane microRNAs

Directory of Open Access Journals (Sweden)

Thiebaut Flávia

2012-07-01

Full Text Available Abstract Background MicroRNA-regulation of gene expression plays a key role in the development and response to biotic and abiotic stresses. Deep sequencing analyses accelerate the process of small RNA discovery in many plants and expand our understanding of miRNA-regulated processes. We therefore undertook small RNA sequencing of sugarcane miRNAs in order to understand their complexity and to explore their role in sugarcane biology. Results A bioinformatics search was carried out to discover novel miRNAs that can be regulated in sugarcane plants submitted to drought and salt stresses, and under pathogen infection. By means of the presence of miRNA precursors in the related sorghum genome, we identified 623 candidates of new mature miRNAs in sugarcane. Of these, 44 were classified as high confidence miRNAs. The biological function of the new miRNAs candidates was assessed by analyzing their putative targets. The set of bona fide sugarcane miRNA includes those likely targeting serine/threonine kinases, Myb and zinc finger proteins. Additionally, a MADS-box transcription factor and an RPP2B protein, which act in development and disease resistant processes, could be regulated by cleavage (21-nt-species and DNA methylation (24-nt-species, respectively. Conclusions A large scale investigation of sRNA in sugarcane using a computational approach has identified a substantial number of new miRNAs and provides detailed genotype-tissue-culture miRNA expression profiles. Comparative analysis between monocots was valuable to clarify aspects about conservation of miRNA and their targets in a plant whose genome has not yet been sequenced. Our findings contribute to knowledge of miRNA roles in regulatory pathways in the complex, polyploidy sugarcane genome.

Metadata to Support Data Warehouse Evolution

Science.gov (United States)

Solodovnikova, Darja

The focus of this chapter is metadata necessary to support data warehouse evolution. We present the data warehouse framework that is able to track evolution process and adapt data warehouse schemata and data extraction, transformation, and loading (ETL) processes. We discuss the significant part of the framework, the metadata repository that stores information about the data warehouse, logical and physical schemata and their versions. We propose the physical implementation of multiversion data warehouse in a relational DBMS. For each modification of a data warehouse schema, we outline the changes that need to be made to the repository metadata and in the database.

Streamlining geospatial metadata in the Semantic Web

Science.gov (United States)

Fugazza, Cristiano; Pepe, Monica; Oggioni, Alessandro; Tagliolato, Paolo; Carrara, Paola

2016-04-01

In the geospatial realm, data annotation and discovery rely on a number of ad-hoc formats and protocols. These have been created to enable domain-specific use cases generalized search is not feasible for. Metadata are at the heart of the discovery process and nevertheless they are often neglected or encoded in formats that either are not aimed at efficient retrieval of resources or are plainly outdated. Particularly, the quantum leap represented by the Linked Open Data (LOD) movement did not induce so far a consistent, interlinked baseline in the geospatial domain. In a nutshell, datasets, scientific literature related to them, and ultimately the researchers behind these products are only loosely connected; the corresponding metadata intelligible only to humans, duplicated on different systems, seldom consistently. Instead, our workflow for metadata management envisages i) editing via customizable web- based forms, ii) encoding of records in any XML application profile, iii) translation into RDF (involving the semantic lift of metadata records), and finally iv) storage of the metadata as RDF and back-translation into the original XML format with added semantics-aware features. Phase iii) hinges on relating resource metadata to RDF data structures that represent keywords from code lists and controlled vocabularies, toponyms, researchers, institutes, and virtually any description one can retrieve (or directly publish) in the LOD Cloud. In the context of a distributed Spatial Data Infrastructure (SDI) built on free and open-source software, we detail phases iii) and iv) of our workflow for the semantics-aware management of geospatial metadata.

Lifecycle assessment of fuel ethanol from sugarcane in Brazil

DEFF Research Database (Denmark)

Ometto, A. R.; Hauschild, Michael Zwicky; Roma, W. N. L.

2009-01-01

This paper presents the lifecycle assessment (LCA) of fuel ethanol, as 100% of the vehicle fuel, from sugarcane in Brazil. The functional unit is 10,000 km run in an urban area by a car with a 1,600-cm(3) engine running on fuel hydrated ethanol, and the resulting reference flow is 1,000 kg......, and study cases at sugarcane farms and fuel ethanol industries in the northeast of SA o pound Paulo State, Brazil. The methodological structure for this LCA study is in agreement with the International Standardization Organization, and the method used is the Environmental Design of Industrial Products...... fuel. The recommendations for the ethanol lifecycle are: harvesting the sugarcane without burning; more environmentally benign agricultural practices; renewable fuel rather than diesel; not washing sugarcane and implementing water recycling systems during the industrial processing; and improving...

Competitiveness of Brazilian sugarcane ethanol compared to US corn ethanol

International Nuclear Information System (INIS)

Crago, Christine L.; Khanna, Madhu; Barton, Jason; Giuliani, Eduardo; Amaral, Weber

2010-01-01

Corn ethanol produced in the US and sugarcane ethanol produced in Brazil are the world's leading sources of biofuel. Current US biofuel policies create both incentives and constraints for the import of ethanol from Brazil and together with the cost competitiveness and greenhouse gas intensity of sugarcane ethanol compared to corn ethanol will determine the extent of these imports. This study analyzes the supply-side determinants of cost competitiveness and compares the greenhouse gas intensity of corn ethanol and sugarcane ethanol delivered to US ports. We find that while the cost of sugarcane ethanol production in Brazil is lower than that of corn ethanol in the US, the inclusion of transportation costs for the former and co-product credits for the latter changes their relative competitiveness. We also find that the relative cost of ethanol in the US and Brazil is highly sensitive to the prevailing exchange rate and prices of feedstocks. At an exchange rate of US1=R2.15 the cost of corn ethanol is 15% lower than the delivered cost of sugarcane ethanol at a US port. Sugarcane ethanol has lower GHG emissions than corn ethanol but a price of over $113 per ton of CO 2 is needed to affect competitiveness. (author)

The Global Streamflow Indices and Metadata Archive (GSIM) - Part 1: The production of a daily streamflow archive and metadata

Science.gov (United States)

Do, Hong Xuan; Gudmundsson, Lukas; Leonard, Michael; Westra, Seth

2018-04-01

This is the first part of a two-paper series presenting the Global Streamflow Indices and Metadata archive (GSIM), a worldwide collection of metadata and indices derived from more than 35 000 daily streamflow time series. This paper focuses on the compilation of the daily streamflow time series based on 12 free-to-access streamflow databases (seven national databases and five international collections). It also describes the development of three metadata products (freely available at https://doi.pangaea.de/10.1594/PANGAEA.887477" target="_blank">https://doi.pangaea.de/10.1594/PANGAEA.887477): (1) a GSIM catalogue collating basic metadata associated with each time series, (2) catchment boundaries for the contributing area of each gauge, and (3) catchment metadata extracted from 12 gridded global data products representing essential properties such as land cover type, soil type, and climate and topographic characteristics. The quality of the delineated catchment boundary is also made available and should be consulted in GSIM application. The second paper in the series then explores production and analysis of streamflow indices. Having collated an unprecedented number of stations and associated metadata, GSIM can be used to advance large-scale hydrological research and improve understanding of the global water cycle.

Fermentation of irradiated sugarcane must

International Nuclear Information System (INIS)

Alcarde, Andre Ricardo; Horii, Jorge; Walder, Julio Marcos Melges

2003-01-01

Bacillus and Lactobacillus are bacteria that usually contaminate the ethanolic fermentation by yeasts and my influence yeast viability. As microorganisms can be killed by ionizing radiation, the efficacy of gamma radiation in reducing the population of certain contaminating bacteria from sugarcane must was examined and, as a consequence, the beneficial effect of lethal doses of radiation on some parameters of yeast-based ethanolic fermentation was verified. Must from sugarcane juice was inoculated with bacteria of the general Bacillus and Lactobacillus. The contaminated must was irradiated with 2.0, 4.0, 6.0, 8.0 and 10.0 kGy of gamma radiation. After ethanolic fermentation by the yeast (Saccharomyces cerevisiae) the total and volatile acidity produced during the process were evaluated: yeast viability and ethanol yield were also recorded. Treatments of gamma radiation reduced the population of the contaminating bacteria in the sugarcane must. The acidity produced during the fermentation decreased as the dose rate of radiation increased. Conversely, the yeast viability increased as the dose rate of radiation increased. Gamma irradiation was an efficient treatment to decontaminate the must and improved its parameters related to ethanolic fermentation, including ethanol yield, which increased 1.9%. (author)

Metadata Aided Run Selection at ATLAS

CERN Document Server

Buckingham, RM; The ATLAS collaboration; Tseng, JC-L; Viegas, F; Vinek, E

2010-01-01

Management of the large volume of data collected by any large scale sci- entific experiment requires the collection of coherent metadata quantities, which can be used by reconstruction or analysis programs and/or user in- terfaces, to pinpoint collections of data needed for specific purposes. In the ATLAS experiment at the LHC, we have collected metadata from systems storing non-event-wise data (Conditions) into a relational database. The Conditions metadata (COMA) database tables not only contain conditions known at the time of event recording, but also allow for the addition of conditions data collected as a result of later analysis of the data (such as improved measurements of beam conditions or assessments of data quality). A new web based interface called “runBrowser” makes these Conditions Metadata available as a Run based selection service. runBrowser, based on php and javascript, uses jQuery to present selection criteria and report results. It not only facilitates data selection by conditions at...

Metadata aided run selection at ATLAS

CERN Document Server

Buckingham, RM; The ATLAS collaboration; Tseng, JC-L; Viegas, F; Vinek, E

2011-01-01

Management of the large volume of data collected by any large scale scientific experiment requires the collection of coherent metadata quantities, which can be used by reconstruction or analysis programs and/or user interfaces, to pinpoint collections of data needed for specific purposes. In the ATLAS experiment at the LHC, we have collected metadata from systems storing non-event-wise data (Conditions) into a relational database. The Conditions metadata (COMA) database tables not only contain conditions known at the time of event recording, but also allow for the addition of conditions data collected as a result of later analysis of the data (such as improved measurements of beam conditions or assessments of data quality). A new web based interface called “runBrowser” makes these Conditions Metadata available as a Run based selection service. runBrowser, based on php and javascript, uses jQuery to present selection criteria and report results. It not only facilitates data selection by conditions attrib...

The Global Streamflow Indices and Metadata Archive (GSIM – Part 1: The production of a daily streamflow archive and metadata

Directory of Open Access Journals (Sweden)

H. X. Do

2018-04-01

Full Text Available This is the first part of a two-paper series presenting the Global Streamflow Indices and Metadata archive (GSIM, a worldwide collection of metadata and indices derived from more than 35 000 daily streamflow time series. This paper focuses on the compilation of the daily streamflow time series based on 12 free-to-access streamflow databases (seven national databases and five international collections. It also describes the development of three metadata products (freely available at https://doi.pangaea.de/10.1594/PANGAEA.887477: (1 a GSIM catalogue collating basic metadata associated with each time series, (2 catchment boundaries for the contributing area of each gauge, and (3 catchment metadata extracted from 12 gridded global data products representing essential properties such as land cover type, soil type, and climate and topographic characteristics. The quality of the delineated catchment boundary is also made available and should be consulted in GSIM application. The second paper in the series then explores production and analysis of streamflow indices. Having collated an unprecedented number of stations and associated metadata, GSIM can be used to advance large-scale hydrological research and improve understanding of the global water cycle.

Design and fabrication of an exprerimental model of a seeding unit with widthwise sugarcane scions seeding for use in sugarcane planter

Directory of Open Access Journals (Sweden)

A Akbarnia

2017-05-01

Full Text Available Introduction Sugarcane, a plant which sugar is extracted from, is planted in vast areas with hot and humid climate. Brazil is the largest producer of sugarcane in the world. The next five major producers, in decreasing order, are India, China, Thailand, Pakistan and Mexico. Sugarcane is a tropical, perennial grass that forms lateral shoots at the base to produce multiple stems, typically three to four meters high and about 5 cm in diameter. The total area under sugarcane plantation in Iran (Khozestan Province is about 80,000 hectares with an average yield of 100 tons per hectare. To increase the yield per unit of land and reduce production costs and move toward sustainable agriculture, mechanization of agricultural operations seems inevitable. Planters are the most important of farm machinery among the mechanization equipment. Sugarcane cultivation is done both by hand and machine. Hand planting operations is laborious and painstaking work and work efficiency is so low and culture costs are so high. In Iran farms, the sugarcane plantation process is carried out manually by the farmers. Considering the climatic conditions, the agricultural soil composition and constitution, and the different plantation pattern used in Iran, the imported planting machines are not suitable for the farming conditions in the country. Moreover, the domestically produced machines, which are mostly based on the imported versions, do not provide adequate performance. Therefore, fabrication of a machine, capable of continuously lifting the sugarcane scions from a container and sending them to a dropper pipe, uniformly and in conformance with the climatic conditions of the sugarcane farms in the country, is of great importance. Materials and Methods In this research, initially, a field study was carried out to identify the problems and shortcomings of imported and copied planting machines in sugarcane farms, such as jamming of the scions conveying mechanism and the

Prediction of Solar Eruptions Using Filament Metadata

Science.gov (United States)

Aggarwal, Ashna; Schanche, Nicole; Reeves, Katharine K.; Kempton, Dustin; Angryk, Rafal

2018-05-01

We perform a statistical analysis of erupting and non-erupting solar filaments to determine the properties related to the eruption potential. In order to perform this study, we correlate filament eruptions documented in the Heliophysics Event Knowledgebase (HEK) with HEK filaments that have been grouped together using a spatiotemporal tracking algorithm. The HEK provides metadata about each filament instance, including values for length, area, tilt, and chirality. We add additional metadata properties such as the distance from the nearest active region and the magnetic field decay index. We compare trends in the metadata from erupting and non-erupting filament tracks to discover which properties present signs of an eruption. We find that a change in filament length over time is the most important factor in discriminating between erupting and non-erupting filament tracks, with erupting tracks being more likely to have decreasing length. We attempt to find an ensemble of predictive filament metadata using a Random Forest Classifier approach, but find the probability of correctly predicting an eruption with the current metadata is only slightly better than chance.

Inoculation of sugarcane with diazotrophic bacteria

Directory of Open Access Journals (Sweden)

Nivaldo Schultz

2014-04-01

Full Text Available The sugarcane industry, a strategic crop in Brazil, requires technological improvements in production efficiency to increase the crop energy balance. Among the various currently studied alternatives, inoculation with diazotrophic bacteria proved to be a technology with great potential. In this context, the efficiency of a mixture of bacterial inoculant was evaluated with regard to the agronomic performance and N nutrition of sugarcane. The experiment was carried out on an experimental field of Embrapa Agrobiologia, in Seropédica, Rio de Janeiro, using a randomized block, 2 × 3 factorial design (two varieties and three treatments with four replications, totaling 24 plots. The varieties RB867515 and RB72454 were tested in treatments consisting of: inoculation with diazotrophic bacteria, N-fertilized control with 120 kg ha-1 N and absolute control (no inoculation and no N fertilizer. The inoculum was composed of five strains of five diazotrophic species. The yield, dry matter accumulation, total N in the shoot dry matter and the contribution of N by biological fixation were evaluated, using the natural 15N abundance in non-inoculated sugarcane as reference. The bacterial inoculant increased the stalk yield of variety RB72454 similarly to fertilization with 120 kg ha-1 N in the harvests of plant-cane and first ratoon crops, however the contribution of biological N fixation was unchanged by inoculation, indicating that the benefits of the inoculant in sugarcane may have resulted from plant growth promotion.

Soil Quality Indexing Strategies for Evaluating Sugarcane Expansion in Brazil.

Science.gov (United States)

Cherubin, Maurício R; Karlen, Douglas L; Cerri, Carlos E P; Franco, André L C; Tormena, Cássio A; Davies, Christian A; Cerri, Carlos C

2016-01-01

Increasing demand for biofuel has intensified land-use change (LUC) for sugarcane (Saccharum officinarum) expansion in Brazil. Assessments of soil quality (SQ) response to this LUC are essential for quantifying and monitoring sustainability of sugarcane production over time. Since there is not a universal methodology for assessing SQ, we conducted a field-study at three sites within the largest sugarcane-producing region of Brazil to develop a SQ index (SQI). The most common LUC scenario (i.e., native vegetation to pasture to sugarcane) was evaluated using six SQI strategies with varying complexities. Thirty eight soil indicators were included in the total dataset. Two minimum datasets were selected: one using principal component analysis (7 indicators) and the other based on expert opinion (5 indicators). Non-linear scoring curves were used to interpret the indicator values. Weighted and non-weighted additive methods were used to combine individual indicator scores into an overall SQI. Long-term conversion from native vegetation to extensive pasture significantly decreased overall SQ. In contrast, conversion from pasture to sugarcane had no significant impact on overall SQ at the regional scale, but site-specific responses were found. In general, sugarcane production improved chemical attributes (i.e., higher macronutrient levels and lower soil acidity); however it has negative effects on physical and biological attributes (i.e., higher soil compaction and structural degradation as well as lower soil organic carbon (SOC), abundance and diversity of macrofauna and microbial activity). Overall, we found that simple, user-friendly strategies were as effective as more complex ones for identifying SQ changes. Therefore, as a protocol for SQ assessments in Brazilian sugarcane areas, we recommend using a small number of indicators (e.g., pH, P, K, Visual Evaluation of Soil Structure -VESS scores and SOC concentration) and proportional weighting to reflect chemical

Soil Quality Indexing Strategies for Evaluating Sugarcane Expansion in Brazil

Science.gov (United States)

Cherubin, Maurício R.; Karlen, Douglas L.; Cerri, Carlos E. P.; Franco, André L. C.; Tormena, Cássio A.; Davies, Christian A.; Cerri, Carlos C.

2016-01-01

Increasing demand for biofuel has intensified land-use change (LUC) for sugarcane (Saccharum officinarum) expansion in Brazil. Assessments of soil quality (SQ) response to this LUC are essential for quantifying and monitoring sustainability of sugarcane production over time. Since there is not a universal methodology for assessing SQ, we conducted a field-study at three sites within the largest sugarcane-producing region of Brazil to develop a SQ index (SQI). The most common LUC scenario (i.e., native vegetation to pasture to sugarcane) was evaluated using six SQI strategies with varying complexities. Thirty eight soil indicators were included in the total dataset. Two minimum datasets were selected: one using principal component analysis (7 indicators) and the other based on expert opinion (5 indicators). Non-linear scoring curves were used to interpret the indicator values. Weighted and non-weighted additive methods were used to combine individual indicator scores into an overall SQI. Long-term conversion from native vegetation to extensive pasture significantly decreased overall SQ. In contrast, conversion from pasture to sugarcane had no significant impact on overall SQ at the regional scale, but site-specific responses were found. In general, sugarcane production improved chemical attributes (i.e., higher macronutrient levels and lower soil acidity); however it has negative effects on physical and biological attributes (i.e., higher soil compaction and structural degradation as well as lower soil organic carbon (SOC), abundance and diversity of macrofauna and microbial activity). Overall, we found that simple, user-friendly strategies were as effective as more complex ones for identifying SQ changes. Therefore, as a protocol for SQ assessments in Brazilian sugarcane areas, we recommend using a small number of indicators (e.g., pH, P, K, Visual Evaluation of Soil Structure -VESS scores and SOC concentration) and proportional weighting to reflect chemical

Soil Quality Indexing Strategies for Evaluating Sugarcane Expansion in Brazil.

Directory of Open Access Journals (Sweden)

Maurício R Cherubin

Full Text Available Increasing demand for biofuel has intensified land-use change (LUC for sugarcane (Saccharum officinarum expansion in Brazil. Assessments of soil quality (SQ response to this LUC are essential for quantifying and monitoring sustainability of sugarcane production over time. Since there is not a universal methodology for assessing SQ, we conducted a field-study at three sites within the largest sugarcane-producing region of Brazil to develop a SQ index (SQI. The most common LUC scenario (i.e., native vegetation to pasture to sugarcane was evaluated using six SQI strategies with varying complexities. Thirty eight soil indicators were included in the total dataset. Two minimum datasets were selected: one using principal component analysis (7 indicators and the other based on expert opinion (5 indicators. Non-linear scoring curves were used to interpret the indicator values. Weighted and non-weighted additive methods were used to combine individual indicator scores into an overall SQI. Long-term conversion from native vegetation to extensive pasture significantly decreased overall SQ. In contrast, conversion from pasture to sugarcane had no significant impact on overall SQ at the regional scale, but site-specific responses were found. In general, sugarcane production improved chemical attributes (i.e., higher macronutrient levels and lower soil acidity; however it has negative effects on physical and biological attributes (i.e., higher soil compaction and structural degradation as well as lower soil organic carbon (SOC, abundance and diversity of macrofauna and microbial activity. Overall, we found that simple, user-friendly strategies were as effective as more complex ones for identifying SQ changes. Therefore, as a protocol for SQ assessments in Brazilian sugarcane areas, we recommend using a small number of indicators (e.g., pH, P, K, Visual Evaluation of Soil Structure -VESS scores and SOC concentration and proportional weighting to reflect

Development of somaclones in sugarcane genotype BF-162 and ...

African Journals Online (AJOL)

pris

2012-02-21

Feb 21, 2012 ... Cluster and sub cluster formation further verified the presence of variability in the red rot resistant somaclones with respect to the parent. Key words: Sugarcane, callogenesis, organogenesis, somaclone, polymorphism, cluster. INTRODUCTION. Sugarcane (Saccharum officinarum L) is a major source.

A web-based, dynamic metadata interface to MDSplus

International Nuclear Information System (INIS)

Gardner, Henry J.; Karia, Raju; Manduchi, Gabriele

2008-01-01

We introduce the concept of a Fusion Data Grid and discuss the management of metadata within such a Grid. We describe a prototype application which serves fusion data over the internet together with metadata information which can be flexibly created and modified over time. The application interfaces with the MDSplus data acquisition system and it has been designed to capture metadata which is generated by scientists from the post-processing of experimental data. The implementation of dynamic metadata tables using the Java programming language together with an object-relational mapping system, Hibernate, is described in the Appendix

Frost Damage Detection in Sugarcane Crop Using Modis Images and Srtm Data

Science.gov (United States)

Rudorff, B.; Alves de Aguiar, D.; Adami, M.

2011-12-01

Brazil is the largest world producer of sugarcane which is used to produce almost equal proportions of either sugar (food) or ethanol (biofuel). In recent years sugarcane crop production has increased fast to meet the growing market demand for sugar and ethanol. This increase has been mainly due to expansion in crop area, but sugarcane production is also subjected to several factors that influence both the agricultural crop yield (tons of stalks/ha) and the industrial yield (kg of sugar/ton of stalks). Sugarcane is a semi-perennial crop that experiences major growth during spring and summer seasons with large demands for water and high temperatures to produce good stalk formation (crop yield). The harvest is performed mainly during fall and winter seasons when water availability and temperature should be low in order to accumulate sucrose in the stalks (industrial yield). These favorable climatic conditions for sugarcane crop are found in several regions in Brazil, particularly in São Paulo state, which is the major sugarcane producer in Brazil being responsible for almost 60% of its production. Despite the favorable climate in São Paulo state there is a certain probability of frost occurrence from time to time that has a negative impact on sugarcane crop, particularly on industrial yield, reducing the amount of sugar in the stalks; having consequences on price increase and product shortage. To evaluate the impact of frost on sugarcane crop, in the field, on a state level, is not a trivial task; however, this information is relevant due to its direct impact on the consumer market. Remote sensing images allow a synoptic view and present great potential to monitor large sugarcane plantations as has been done since 2003 in São Paulo state by the Canasat Project with Landsat type images (http://www.dsr.inpe.br/laf/canasat/en/). Images acquired from sensors with high temporal resolution such as MODIS (Moderate-Resolution Imaging Spectroradiometer) present the

Creating metadata that work for digital libraries and Google

OpenAIRE

Dawson, Alan

2004-01-01

For many years metadata has been recognised as a significant component of the digital information environment. Substantial work has gone into creating complex metadata schemes for describing digital content. Yet increasingly Web search engines, and Google in particular, are the primary means of discovering and selecting digital resources, although they make little use of metadata. This article considers how digital libraries can gain more value from their metadata by adapting it for Google us...

Technologies for metadata management in scientific a

OpenAIRE

Castro-Romero, Alexander; González-Sanabria, Juan S.; Ballesteros-Ricaurte, Javier A.

2015-01-01

The use of Semantic Web technologies has been increasing, so it is common using them in different ways. This article evaluates how these technologies can contribute to improve the indexing in articles in scientific journals. Initially, there is a conceptual review about metadata. Later, studying the most important technologies for the use of metadata in Web and, this way, choosing one of them to apply it in the case of study of scientific articles indexing, in order to determine the metadata ...

Study of protein and metabolic profile of sugarcane workers

Energy Technology Data Exchange (ETDEWEB)

Polachini, G.M.; Tajara, E.H. [Faculdade de Medicina de Sao Jose do Rio Preto (FAMERP), SP (Brazil); Santos, U.P. [Universidade de Sao Paulo (USP), SP (Brazil); Zeri, A.C.M.; Paes Leme, A.F. [Laboratorio Nacional de Luz Sincrotron (LNLS), Campinas, SP (Brazil)

2012-07-01

Full text: The National Alcohol Program (Proalcool) is a successful Brazilian renewable fuel initiative aiming to reduce the country's oil dependence. Producing ethanol from sugar cane, the program has shown positive results although accompanied by potential damage. The environmental impact mainly derives from the particulate matter emissions due to sugarcane burning, which is potentially harmful to human health. The physical activity of sugarcane workers is repetitive and exhaustive and is carried out in presence of dust, smoke and soot. The efforts by the sugarcane workers during the labor process result in increased risks of nervous, respiratory and cardiovascular system diseases and also in premature death. The aim of the present study was to investigate the effect of occupational stress on protein and metabolic profile of sugarcane workers. Forty serum samples were analyzed by 1-DE and LC MS/MS proteomic shotgun strategy and nuclear magnetic resonance (NMR). A set of proteins was found to be altered in workers after crops when compared with controls. The analysis of NMR spectra by Chenomx also showed differences in the expression of metabolites. For example, lactate displayed higher levels in control subjects than in sugarcane workers, and vice versa for the acetate. The concentrations of the two metabolites were lower after the crop, except in the case of acetate, which remained uniform in the control subjects before and after the crop. The present findings can have important application for rational designs of preventive measures and early disease detection in sugarcane workers. (author)

Study of protein and metabolic profile of sugarcane workers

International Nuclear Information System (INIS)

Polachini, G.M.; Tajara, E.H.; Santos, U.P.; Zeri, A.C.M.; Paes Leme, A.F.

2012-01-01

Full text: The National Alcohol Program (Proalcool) is a successful Brazilian renewable fuel initiative aiming to reduce the country's oil dependence. Producing ethanol from sugar cane, the program has shown positive results although accompanied by potential damage. The environmental impact mainly derives from the particulate matter emissions due to sugarcane burning, which is potentially harmful to human health. The physical activity of sugarcane workers is repetitive and exhaustive and is carried out in presence of dust, smoke and soot. The efforts by the sugarcane workers during the labor process result in increased risks of nervous, respiratory and cardiovascular system diseases and also in premature death. The aim of the present study was to investigate the effect of occupational stress on protein and metabolic profile of sugarcane workers. Forty serum samples were analyzed by 1-DE and LC MS/MS proteomic shotgun strategy and nuclear magnetic resonance (NMR). A set of proteins was found to be altered in workers after crops when compared with controls. The analysis of NMR spectra by Chenomx also showed differences in the expression of metabolites. For example, lactate displayed higher levels in control subjects than in sugarcane workers, and vice versa for the acetate. The concentrations of the two metabolites were lower after the crop, except in the case of acetate, which remained uniform in the control subjects before and after the crop. The present findings can have important application for rational designs of preventive measures and early disease detection in sugarcane workers. (author)

Application of sugarcane bagasse ash as a partial cement ...

African Journals Online (AJOL)

Sugarcane bagasse ash is a byproduct of sugar factories found after burning sugarcane ... making materials especially cement, resulting in an increase in price. ... advantages can also be exploited by using bagasse ash as a partial cement ... Normal consistency, Setting time, Compressive strength, Water penetration depth.

[Effects of reduced nitrogen application and soybean intercropping on nitrogen balance of sugarcane field].

Science.gov (United States)

Liu, Yu; Zhang, Ying; Yang, Wen-ting; Li, Zhi-xian; Guan, Ao-mei

2015-03-01

A four-year (2010-2013) field experiment was carried out to explore the effects of three planting patterns (sugarcane, soybean monoculture and sugarcane-soybean 1:2 intercropping) with two nitrogen input levels (300 and 525 kg . hm-2) on soybean nitrogen fixation, sugarcane and soybean nitrogen accumulation, and ammonia volatilization and nitrogen leaching in sugarcane field. The results showed that the soybean nitrogen fixation efficiency (NFE) of sugarcane-soybean inter-cropping was lower than that of soybean monoculture. There was no significant difference in NFE among the treatments with the two nitrogen application rates. The nitrogen application rate and inter-cropping did not remarkably affect nitrogen accumulation of sugarcane and soybean. The ammonia volatilization of the reduced nitrogen input treatment was significantly lower than that of the conventional nitrogen input treatment. Furthermore, there was no significant difference in nitrogen leaching at different nitrogen input levels and among different planting patterns. The sugarcane field nitrogen balance analysis indicated that the nitrogen application rate dominated the nitrogen budget of sugarcane field. During the four-year experiment, all treatments leaved a nitrogen surplus (from 73.10 to 400.03 kg . hm-2) , except a nitrogen deficit of 66.22 kg . hm-2 in 2011 in the treatment of sugarcane monoculture with the reduced nitrogen application. The excessive nitrogen surplus might increase the risk of nitrogen pollution in the field. In conclusion, sugarcane-soybean intercropping with reduced nitrogen application is feasible to practice in consideration of enriching the soil fertility, reducing nitrogen pollution and saving production cost in sugarcane field.

The role of metadata in managing large environmental science datasets. Proceedings

Energy Technology Data Exchange (ETDEWEB)

Melton, R.B.; DeVaney, D.M. [eds.] [Pacific Northwest Lab., Richland, WA (United States); French, J. C. [Univ. of Virginia, (United States)

1995-06-01

The purpose of this workshop was to bring together computer science researchers and environmental sciences data management practitioners to consider the role of metadata in managing large environmental sciences datasets. The objectives included: establishing a common definition of metadata; identifying categories of metadata; defining problems in managing metadata; and defining problems related to linking metadata with primary data.

Lack of Detection of Bt Sugarcane Cry1Ab and NptII DNA and Proteins in Sugarcane Processing Products Including Raw Sugar

Directory of Open Access Journals (Sweden)

Adriana Cheavegatti-Gianotto

2018-03-01

Full Text Available Brazil is the largest sugarcane producer and the main sugar exporter in the world. The industrial processes applied by Brazilian mills are very efficient in producing highly purified sugar and ethanol. Literature presents evidence of lack of DNA/protein in these products, regardless of the nature of sugarcane used as raw material. Recently CTNBio, the Brazilian biosafety authority, has approved the first biotechnology-derived sugarcane variety for cultivation, event CTC175-A, which expresses the Cry1Ab protein to control the sugarcane borer (Diatraea saccharalis. The event also expresses neomycin-phosphotransferase type II (NptII protein used as selectable marker during the transformation process. Because of the high purity of sugar and ethanol produced from genetically modified sugarcane, these end-products should potentially be classified as “pure substances, chemically defined,” by Brazilian Biosafety Law No. 11.105. If this classification is to be adopted, these substances are not considered as “GMO derivatives” and fall out of the scope of Law No. 11.105. In order to assess sugar composition and quality, we evaluate Cry1Ab and NptII expression in several sugarcane tissues and in several fractions from laboratory-scale processing of event CTC175-A for the presence of these heterologous proteins as well as for the presence of traces of recombinant DNA. The results of these studies show that CTC175-A presents high expression of Cry1Ab in leaves and barely detectable expression of heterologous proteins in stalks. We also evaluated the presence of ribulose-1,5-bisphosphate carboxylase/oxygenase protein and DNA in the fractions of the industrial processing of conventional Brazilian sugarcane cultivars. Results from both laboratory and industrial processing were concordant, demonstrating that DNA and protein are not detected in the clarified juice and downstream processed fractions, including ethanol and raw sugar, indicating that protein

Properties of Sugarcane Fiber on the Strength of the Normal and Lightweight Concrete

Directory of Open Access Journals (Sweden)

Sheikh Khalid Faisal

2017-01-01

Full Text Available The usage of natural fiber in construction are widely used in building materials engineering. However, using sugarcane fiber waste material as a natural in construction is very precious, because it can increase crack control and ductility, brittle concrete. Furthermore, the usage of sugarcane in construction can reduce of environmental pollution.In this study, a mixture of sugarcane fiber to be used in normal grade concrete and lightweight concrete to determine whether there is an increase in the compressive and tensile strength of the concrete. The objective of this study was to determine the compressive and tensile strength between control concrete and concrete mix with sugarcane fiber. In addition, the optimal volume of sugarcane fiber in the concrete mixture where the percentage of sugarcane fiber used was 0.5%, 1.0% and 1.5%. Compessive strength was tested on days 7 and 28 after curing test is carried out. Meanwhile, the tensile test, has been carried out to measure the tensile strength of sugarcane fiber relations in concrete mixes only at 28 day curing. Result of the testing showed that the optimum value containing admixtures of sugarcane is 0.5%. This percentage get the value of compressive strength is nearest with concrete control and the value of tensile strength is higher than concrete control and also the timing of concrete to cracked getting slower. Therefore, the use of sugarcane fiber suitable for addition that do not exceed 0.5% of the concrete mixture.

Growing Sugarcane for Bioenergy – Effects on the Soil

NARCIS (Netherlands)

Hartemink, A.E.

2010-01-01

An increasing area of sugarcane is being growing for the production of bioenergy. Sugarcane puts a high demands on the soil due to the use of heavy machinery and because large amounts of nutrients are removed with the harvest. Biocides and inorganic fertilizers introduces risks of groundwater

Trade-offs between Biofuels Energy Production, Land Use and Water Use in Florida

Energy Technology Data Exchange (ETDEWEB)

Fidler, Michal [Intelligentsia International Inc., LaBelle, FL (United States); Capece, John [Intelligentsia International Inc., LaBelle, FL (United States); Hanlon, Edward [Univ. of Florida, Immokalee, FL (United States); Alsharif, Kamal [Univ. of South Florida, Tampa, FL (United States)

2014-02-11

Objective of the presentation is to document land use and water use implications of biomass production to demonstrate the overall resources implications associated with bioethanol production for Florida’s transportation sector needs. Rationale for using biofuels (BF) is explained, so are advantages & challenges of BF production and use. Land use changes (LUC) in Florida are presented and consequences outlined. It is documented that Florida’s agricultural land is a very limited resource, with only 0.43 ac/person comparing to the global average of 1.71 ac/person. The direct relation of increased biofuels production causing increased water use is explained. Favorable climate, water resources, advanced research, traditional leading agricultural role, minor oil reserves, no refineries and increasing energy demands are the main reasons why Florida considers pursuing BF production in large scale. Eight various bioethanol crops produced in Florida were considered in this study (Miscanthus, Switchgrass, Sweet Sorghum, Corn, Elephantgrass, Sugarcane, Energycane, Eucalyptus). Biomass yield and bioethanol yield of these crops are documented. Bioethanol needs of Florida are estimated and related land requirements for the needed bioethanol production calculated. Projections for various bioethanol blends (E15 to E85) are then presented. Finally, water demand for biofuels production is quantified. It is concluded that land use requirement for production of all ethanol in E85 fuel blend in Florida is roughly the same as the total available ag land in Florida for the best yielding biofuels crops (energycane, eucalyptus). Water demand for production of all ethanol needed for E100 would increase current overall water consumption in Florida between 65% and 100% for the most common biofuels crops. Vehicular energy is only 33% of Floridians energy consumption, so even all Florida’s agricultural land was given up for biofuels, it would still produce only 33% of Florida’s total

Climate change and sugarcane expansion increase Hantavirus infection risk.

Science.gov (United States)

Prist, Paula Ribeiro; Uriarte, María; Fernandes, Katia; Metzger, Jean Paul

2017-07-01

Hantavirus Cardiopulmonary Syndrome (HCPS) is a disease caused by Hantavirus, which is highly virulent for humans. High temperatures and conversion of native vegetation to agriculture, particularly sugarcane cultivation can alter abundance of rodent generalist species that serve as the principal reservoir host for HCPS, but our understanding of the compound effects of land use and climate on HCPS incidence remains limited, particularly in tropical regions. Here we rely on a Bayesian model to fill this research gap and to predict the effects of sugarcane expansion and expected changes in temperature on Hantavirus infection risk in the state of São Paulo, Brazil. The sugarcane expansion scenario was based on historical data between 2000 and 2010 combined with an agro-environment zoning guideline for the sugar and ethanol industry. Future evolution of temperature anomalies was derived using 32 general circulation models from scenarios RCP4.5 and RCP8.5 (Representative greenhouse gases Concentration Pathways adopted by IPCC). Currently, the state of São Paulo has an average Hantavirus risk of 1.3%, with 6% of the 645 municipalities of the state being classified as high risk (HCPS risk ≥ 5%). Our results indicate that sugarcane expansion alone will increase average HCPS risk to 1.5%, placing 20% more people at HCPS risk. Temperature anomalies alone increase HCPS risk even more (1.6% for RCP4.5 and 1.7%, for RCP8.5), and place 31% and 34% more people at risk. Combined sugarcane and temperature increases led to the same predictions as scenarios that only included temperature. Our results demonstrate that climate change effects are likely to be more severe than those from sugarcane expansion. Forecasting disease is critical for the timely and efficient planning of operational control programs that can address the expected effects of sugarcane expansion and climate change on HCPS infection risk. The predicted spatial location of HCPS infection risks obtained here can be

Climate change and sugarcane expansion increase Hantavirus infection risk.

Directory of Open Access Journals (Sweden)

Paula Ribeiro Prist

2017-07-01

Full Text Available Hantavirus Cardiopulmonary Syndrome (HCPS is a disease caused by Hantavirus, which is highly virulent for humans. High temperatures and conversion of native vegetation to agriculture, particularly sugarcane cultivation can alter abundance of rodent generalist species that serve as the principal reservoir host for HCPS, but our understanding of the compound effects of land use and climate on HCPS incidence remains limited, particularly in tropical regions. Here we rely on a Bayesian model to fill this research gap and to predict the effects of sugarcane expansion and expected changes in temperature on Hantavirus infection risk in the state of São Paulo, Brazil. The sugarcane expansion scenario was based on historical data between 2000 and 2010 combined with an agro-environment zoning guideline for the sugar and ethanol industry. Future evolution of temperature anomalies was derived using 32 general circulation models from scenarios RCP4.5 and RCP8.5 (Representative greenhouse gases Concentration Pathways adopted by IPCC. Currently, the state of São Paulo has an average Hantavirus risk of 1.3%, with 6% of the 645 municipalities of the state being classified as high risk (HCPS risk ≥ 5%. Our results indicate that sugarcane expansion alone will increase average HCPS risk to 1.5%, placing 20% more people at HCPS risk. Temperature anomalies alone increase HCPS risk even more (1.6% for RCP4.5 and 1.7%, for RCP8.5, and place 31% and 34% more people at risk. Combined sugarcane and temperature increases led to the same predictions as scenarios that only included temperature. Our results demonstrate that climate change effects are likely to be more severe than those from sugarcane expansion. Forecasting disease is critical for the timely and efficient planning of operational control programs that can address the expected effects of sugarcane expansion and climate change on HCPS infection risk. The predicted spatial location of HCPS infection risks

Efficient processing of MPEG-21 metadata in the binary domain

Science.gov (United States)

Timmerer, Christian; Frank, Thomas; Hellwagner, Hermann; Heuer, Jörg; Hutter, Andreas

2005-10-01

XML-based metadata is widely adopted across the different communities and plenty of commercial and open source tools for processing and transforming are available on the market. However, all of these tools have one thing in common: they operate on plain text encoded metadata which may become a burden in constrained and streaming environments, i.e., when metadata needs to be processed together with multimedia content on the fly. In this paper we present an efficient approach for transforming such kind of metadata which are encoded using MPEG's Binary Format for Metadata (BiM) without additional en-/decoding overheads, i.e., within the binary domain. Therefore, we have developed an event-based push parser for BiM encoded metadata which transforms the metadata by a limited set of processing instructions - based on traditional XML transformation techniques - operating on bit patterns instead of cost-intensive string comparisons.

Improving Scientific Metadata Interoperability And Data Discoverability using OAI-PMH

Science.gov (United States)

Devarakonda, Ranjeet; Palanisamy, Giri; Green, James M.; Wilson, Bruce E.

2010-12-01

While general-purpose search engines (such as Google or Bing) are useful for finding many things on the Internet, they are often of limited usefulness for locating Earth Science data relevant (for example) to a specific spatiotemporal extent. By contrast, tools that search repositories of structured metadata can locate relevant datasets with fairly high precision, but the search is limited to that particular repository. Federated searches (such as Z39.50) have been used, but can be slow and the comprehensiveness can be limited by downtime in any search partner. An alternative approach to improve comprehensiveness is for a repository to harvest metadata from other repositories, possibly with limits based on subject matter or access permissions. Searches through harvested metadata can be extremely responsive, and the search tool can be customized with semantic augmentation appropriate to the community of practice being served. However, there are a number of different protocols for harvesting metadata, with some challenges for ensuring that updates are propagated and for collaborations with repositories using differing metadata standards. The Open Archive Initiative Protocol for Metadata Handling (OAI-PMH) is a standard that is seeing increased use as a means for exchanging structured metadata. OAI-PMH implementations must support Dublin Core as a metadata standard, with other metadata formats as optional. We have developed tools which enable our structured search tool (Mercury; http://mercury.ornl.gov) to consume metadata from OAI-PMH services in any of the metadata formats we support (Dublin Core, Darwin Core, FCDC CSDGM, GCMD DIF, EML, and ISO 19115/19137). We are also making ORNL DAAC metadata available through OAI-PMH for other metadata tools to utilize, such as the NASA Global Change Master Directory, GCMD). This paper describes Mercury capabilities with multiple metadata formats, in general, and, more specifically, the results of our OAI-PMH implementations and

Mining Building Metadata by Data Stream Comparison

DEFF Research Database (Denmark)

Holmegaard, Emil; Kjærgaard, Mikkel Baun

2016-01-01

to handle data streams with only slightly similar patterns. We have evaluated Metafier with points and data from one building located in Denmark. We have evaluated Metafier with 903 points, and the overall accuracy, with only 3 known examples, was 94.71%. Furthermore we found that using DTW for mining...... ways to annotate sensor and actuation points. This makes it difficult to create intuitive queries for retrieving data streams from points. Another problem is the amount of insufficient or missing metadata. We introduce Metafier, a tool for extracting metadata from comparing data streams. Metafier...... enables a semi-automatic labeling of metadata to building instrumentation. Metafier annotates points with metadata by comparing the data from a set of validated points with unvalidated points. Metafier has three different algorithms to compare points with based on their data. The three algorithms...

openPDS: protecting the privacy of metadata through SafeAnswers.

Directory of Open Access Journals (Sweden)

Yves-Alexandre de Montjoye

Full Text Available The rise of smartphones and web services made possible the large-scale collection of personal metadata. Information about individuals' location, phone call logs, or web-searches, is collected and used intensively by organizations and big data researchers. Metadata has however yet to realize its full potential. Privacy and legal concerns, as well as the lack of technical solutions for personal metadata management is preventing metadata from being shared and reconciled under the control of the individual. This lack of access and control is furthermore fueling growing concerns, as it prevents individuals from understanding and managing the risks associated with the collection and use of their data. Our contribution is two-fold: (1 we describe openPDS, a personal metadata management framework that allows individuals to collect, store, and give fine-grained access to their metadata to third parties. It has been implemented in two field studies; (2 we introduce and analyze SafeAnswers, a new and practical way of protecting the privacy of metadata at an individual level. SafeAnswers turns a hard anonymization problem into a more tractable security one. It allows services to ask questions whose answers are calculated against the metadata instead of trying to anonymize individuals' metadata. The dimensionality of the data shared with the services is reduced from high-dimensional metadata to low-dimensional answers that are less likely to be re-identifiable and to contain sensitive information. These answers can then be directly shared individually or in aggregate. openPDS and SafeAnswers provide a new way of dynamically protecting personal metadata, thereby supporting the creation of smart data-driven services and data science research.

Sugar-cane juice induces pectin lyase and polygalacturonase in Penicillium griseoroseum

Directory of Open Access Journals (Sweden)

Minussi Rosana Cristina

1998-01-01

Full Text Available The use of other inducers as substitutes for pectin was studied aiming to reduce the production costs of pectic enzymes. The effects of sugar-cane juice on the production of pectin lyase (PL and polygalacturonase (PG by Penicillium griseoroseum were investigated. The fungus was cultured in a mineral medium (pH 6.3 in a rotary shaker (150 rpm for 48 h at 25oC. Culture media were supplemented with yeast extract and sucrose or sugar-cane juice. Sugar-cane juice added singly to the medium promoted higher PL activity and mycelial dry weight when compared to pectin and the use of sugar-cane juice and yeast extract yielded levels of PG activity that were similar to those obtained with sucrose-yeast extract or pectin. The results indicated that, even at low concentrations, sugar-cane juice was capable of inducing pectin lyase and polygalacturonase with no cellulase activity in P. griseoroseum.

Sugarcane maturity estimation through edaphic-climatic parameters

Directory of Open Access Journals (Sweden)

Scarpari Maximiliano Salles

2004-01-01

Full Text Available Sugarcane (Saccharum officinarum L. grows under different weather conditions directly affecting crop maturation. Raw material quality predicting models are important tools in sugarcane crop management; the goal of these models is to provide productivity estimates during harvesting, increasing the efficiency of strategical and administrative decisions. The objective of this work was developing a model to predict Total Recoverable Sugars (TRS during harvesting, using data related to production factors such as soil water storage and negative degree-days. The database of a sugar mill for the crop seasons 1999/2000, 2000/2001 and 2001/2002 was analyzed, and statistical models were tested to estimate raw material. The maturity model for a one-year old sugarcane proved to be significant, with a coefficient of determination (R² of 0.7049*. No differences were detected between measured and estimated data in the simulation (P < 0.05.

Rumen dry matter degradability of fresh and ensiled sugarcane ...

African Journals Online (AJOL)

This study aimed to evaluate the chemical composition and in situ ruminal degradability of fresh (FSC) and ensiled (ESC) sugarcane. In situ dry matter degradability (DMD) was determined using the nylon bag technique with four cows equipped ruminal fistulas. Cows were fed with fresh or ensiled sugarcane and ...

The political organization of sugarcane production in Western Mexico

NARCIS (Netherlands)

Guzman - Flores, E.

1995-01-01

The strike of CNC sugarcane producers and the immediate response by the refinery administration are a good example of the ongoing political negotiations between the main actors involved in the organization of sugarcane production in the Valley of Autlán-El Grullo. I introduced in Chapter I

Soil carbon, nitrogen and phosphorus changes under sugarcane expansion in Brazil

Energy Technology Data Exchange (ETDEWEB)

Franco, André L.C., E-mail: andrefranco@usp.br [Center for Nuclear Energy in Agriculture, University of São Paulo, Av. Centenário 303, 13416-000 Piracicaba, SP (Brazil); Cherubin, Maurício R. [Center for Nuclear Energy in Agriculture, University of São Paulo, Av. Centenário 303, 13416-000 Piracicaba, SP (Brazil); Pavinato, Paulo S.; Cerri, Carlos E.P. [Department of Soil Science, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Av. Pádua Dias 11, 13418-900 Piracicaba, SP (Brazil); Six, Johan [Department of Environmental Systems Science, ETH Zurich, Tannenstrasse 1, 8092 Zurich (Switzerland); Davies, Christian A. [Shell Technology Centre Houston, 3333 Highway 6 South, Houston, TX 77082 (United States); Cerri, Carlos C. [Center for Nuclear Energy in Agriculture, University of São Paulo, Av. Centenário 303, 13416-000 Piracicaba, SP (Brazil)

2015-05-15

Historical data of land use change (LUC) indicated that the sugarcane expansion has mainly displaced pasture areas in Central–Southern Brazil, globally the largest producer, and that those pastures were prior established over native forests in the Cerrado biome. We sampled 3 chronosequences of land use comprising native vegetation (NV), pasture (PA), and sugarcane crop (SC) in the sugarcane expansion region to assess the effects of LUC on soil carbon, nitrogen, and labile phosphorus pools. Thirty years after conversion of NV to PA, we found significant losses of original soil organic matter (SOM) from NV, while insufficient new organic matter was introduced from tropical grasses into soil to offset the losses, reflecting in a net C emission of 0.4 Mg ha{sup −1} yr{sup −1}. These findings added to decreases in {sup 15}N signal indicated that labile portions of SOM are preserved under PA. Afterwards, in the firsts five years after LUC from PA to SC, sparse variations were found in SOM levels. After more than 20 years of sugarcane crop, however, there were losses of 40 and 35% of C and N stocks, respectively, resulting in a rate of C emission of 1.3 Mg ha{sup −1} yr{sup −1} totally caused by the respiration of SOM from C4-cycle plants. In addition, conversion of pastures to sugarcane mostly increased {sup 15}N signal, indicating an accumulation of more recalcitrant SOM under sugarcane. The microbe- and plant-available P showed site-specific responses to LUC as a function of different P-input managements, with the biological pool mostly accounting for more than 50% of the labile P in both anthropic land uses. With the projections of 6.4 Mha of land required by 2021 for sugarcane expansion in Brazil to achieve ethanol's demand, this explanatory approach to the responses of SOM to LUC will contribute for an accurate assessment of the CO{sub 2} balance of sugarcane ethanol. - Highlights: • An explanatory approach to the responses of soil C, N and P to

Soil carbon, nitrogen and phosphorus changes under sugarcane expansion in Brazil

International Nuclear Information System (INIS)

Franco, André L.C.; Cherubin, Maurício R.; Pavinato, Paulo S.; Cerri, Carlos E.P.; Six, Johan; Davies, Christian A.; Cerri, Carlos C.

2015-01-01

Historical data of land use change (LUC) indicated that the sugarcane expansion has mainly displaced pasture areas in Central–Southern Brazil, globally the largest producer, and that those pastures were prior established over native forests in the Cerrado biome. We sampled 3 chronosequences of land use comprising native vegetation (NV), pasture (PA), and sugarcane crop (SC) in the sugarcane expansion region to assess the effects of LUC on soil carbon, nitrogen, and labile phosphorus pools. Thirty years after conversion of NV to PA, we found significant losses of original soil organic matter (SOM) from NV, while insufficient new organic matter was introduced from tropical grasses into soil to offset the losses, reflecting in a net C emission of 0.4 Mg ha −1 yr −1 . These findings added to decreases in 15 N signal indicated that labile portions of SOM are preserved under PA. Afterwards, in the firsts five years after LUC from PA to SC, sparse variations were found in SOM levels. After more than 20 years of sugarcane crop, however, there were losses of 40 and 35% of C and N stocks, respectively, resulting in a rate of C emission of 1.3 Mg ha −1 yr −1 totally caused by the respiration of SOM from C4-cycle plants. In addition, conversion of pastures to sugarcane mostly increased 15 N signal, indicating an accumulation of more recalcitrant SOM under sugarcane. The microbe- and plant-available P showed site-specific responses to LUC as a function of different P-input managements, with the biological pool mostly accounting for more than 50% of the labile P in both anthropic land uses. With the projections of 6.4 Mha of land required by 2021 for sugarcane expansion in Brazil to achieve ethanol's demand, this explanatory approach to the responses of SOM to LUC will contribute for an accurate assessment of the CO 2 balance of sugarcane ethanol. - Highlights: • An explanatory approach to the responses of soil C, N and P to sugarcane expansion is provided. �

Large-Scale Transcriptome Analysis of Two Sugarcane Genotypes Contrasting for Lignin Content.

Directory of Open Access Journals (Sweden)

Renato Vicentini

Full Text Available Sugarcane is an important crop worldwide for sugar and first generation ethanol production. Recently, the residue of sugarcane mills, named bagasse, has been considered a promising lignocellulosic biomass to produce the second-generation ethanol. Lignin is a major factor limiting the use of bagasse and other plant lignocellulosic materials to produce second-generation ethanol. Lignin biosynthesis pathway is a complex network and changes in the expression of genes of this pathway have in general led to diverse and undesirable impacts on plant structure and physiology. Despite its economic importance, sugarcane genome was still not sequenced. In this study a high-throughput transcriptome evaluation of two sugarcane genotypes contrasting for lignin content was carried out. We generated a set of 85,151 transcripts of sugarcane using RNA-seq and de novo assembling. More than 2,000 transcripts showed differential expression between the genotypes, including several genes involved in the lignin biosynthetic pathway. This information can give valuable knowledge on the lignin biosynthesis and its interactions with other metabolic pathways in the complex sugarcane genome.

Feed Technology of Fibrous Sugarcane Residues for Ruminants

Directory of Open Access Journals (Sweden)

Kuswandi

2007-06-01

Full Text Available Abundant sugarcane residue during shortage of roughage in dry season gives an opportunity to raise ruminants around sugarcane industries. However, these products are not widely used by farmers due to an assumption that the usage is inefficient and that the feed utilization technology is not widely recognized. Sugarcane fibrous residues (tops, bagasse and pith may be a potential feed component if pre-treated to increase its digestion and consumption by the animal, and/or supplemented by other ingredients to balance nutrients in the rumen as well as those for production purpose. Digestibility can be increased by chemical treatments such as ammoniation and other alkaline treatments, whereas consumption can be increased by physical treatments such as grinding, hammermilling or pelleting. Nutrients that are missing in these fibrous residues can be provided by addition of urea, molasses and minerals for maintenance need, and bypass nutrients (carbohydrates, protein and fats that are digested in the small intestine and available for tissue or milk synthesis. There are three options for development of livestock agribusiness based on fibrous sugarcane residues; however, these require several technologies to optimize the utilization of these residues.

Handling Metadata in a Neurophysiology Laboratory

Directory of Open Access Journals (Sweden)

Lyuba Zehl

2016-07-01

Full Text Available To date, non-reproducibility of neurophysiological research is a matterof intense discussion in the scientific community. A crucial componentto enhance reproducibility is to comprehensively collect and storemetadata, that is all information about the experiment, the data,and the applied preprocessing steps on the data, such that they canbe accessed and shared in a consistent and simple manner. However,the complexity of experiments, the highly specialized analysis workflowsand a lack of knowledge on how to make use of supporting softwaretools often overburden researchers to perform such a detailed documentation.For this reason, the collected metadata are often incomplete, incomprehensiblefor outsiders or ambiguous. Based on our research experience in dealingwith diverse datasets, we here provide conceptual and technical guidanceto overcome the challenges associated with the collection, organization,and storage of metadata in a neurophysiology laboratory. Through theconcrete example of managing the metadata of a complex experimentthat yields multi-channel recordings from monkeys performing a behavioralmotor task, we practically demonstrate the implementation of theseapproaches and solutions with the intention that they may be generalizedto a specific project at hand. Moreover, we detail five use casesthat demonstrate the resulting benefits of constructing a well-organizedmetadata collection when processing or analyzing the recorded data,in particular when these are shared between laboratories in a modernscientific collaboration. Finally, we suggest an adaptable workflowto accumulate, structure and store metadata from different sourcesusing, by way of example, the odML metadata framework.

Metadata aided run selection at ATLAS

International Nuclear Information System (INIS)

Buckingham, R M; Gallas, E J; Tseng, J C-L; Viegas, F; Vinek, E

2011-01-01

Management of the large volume of data collected by any large scale scientific experiment requires the collection of coherent metadata quantities, which can be used by reconstruction or analysis programs and/or user interfaces, to pinpoint collections of data needed for specific purposes. In the ATLAS experiment at the LHC, we have collected metadata from systems storing non-event-wise data (Conditions) into a relational database. The Conditions metadata (COMA) database tables not only contain conditions known at the time of event recording, but also allow for the addition of conditions data collected as a result of later analysis of the data (such as improved measurements of beam conditions or assessments of data quality). A new web based interface called 'runBrowser' makes these Conditions Metadata available as a Run based selection service. runBrowser, based on PHP and JavaScript, uses jQuery to present selection criteria and report results. It not only facilitates data selection by conditions attributes, but also gives the user information at each stage about the relationship between the conditions chosen and the remaining conditions criteria available. When a set of COMA selections are complete, runBrowser produces a human readable report as well as an XML file in a standardized ATLAS format. This XML can be saved for later use or refinement in a future runBrowser session, shared with physics/detector groups, or used as input to ELSSI (event level Metadata browser) or other ATLAS run or event processing services.

NAIP National Metadata

Data.gov (United States)

Farm Service Agency, Department of Agriculture — The NAIP National Metadata Map contains USGS Quarter Quad and NAIP Seamline boundaries for every year NAIP imagery has been collected. Clicking on the map also makes...

Isolation and screening of glycolipid biosurfactant producers from sugarcane.

Science.gov (United States)

Morita, Tomotake; Fukuoka, Tokuma; Imura, Tomohiro; Hirose, Naoto; Kitamoto, Dai

2012-01-01

Forty-three fungal producers for glycolipid biosurfactants, mannosylerythritol lipids (MELs), were isolated from leaves and smuts of sugarcane plants. These isolates produced MELs with sugarcane juice as nutrient source. The strains were taxonomically categorized into the genera Pseudozyma and Ustilago on the basis of partial sequences of the ribosomal RNA gene.

An emergent theory of digital library metadata enrich then filter

CERN Document Server

Stevens, Brett

2015-01-01

An Emergent Theory of Digital Library Metadata is a reaction to the current digital library landscape that is being challenged with growing online collections and changing user expectations. The theory provides the conceptual underpinnings for a new approach which moves away from expert defined standardised metadata to a user driven approach with users as metadata co-creators. Moving away from definitive, authoritative, metadata to a system that reflects the diversity of users’ terminologies, it changes the current focus on metadata simplicity and efficiency to one of metadata enriching, which is a continuous and evolving process of data linking. From predefined description to information conceptualised, contextualised and filtered at the point of delivery. By presenting this shift, this book provides a coherent structure in which future technological developments can be considered.

Design and Implementation of a Metadata-rich File System

Energy Technology Data Exchange (ETDEWEB)

Ames, S; Gokhale, M B; Maltzahn, C

2010-01-19

Despite continual improvements in the performance and reliability of large scale file systems, the management of user-defined file system metadata has changed little in the past decade. The mismatch between the size and complexity of large scale data stores and their ability to organize and query their metadata has led to a de facto standard in which raw data is stored in traditional file systems, while related, application-specific metadata is stored in relational databases. This separation of data and semantic metadata requires considerable effort to maintain consistency and can result in complex, slow, and inflexible system operation. To address these problems, we have developed the Quasar File System (QFS), a metadata-rich file system in which files, user-defined attributes, and file relationships are all first class objects. In contrast to hierarchical file systems and relational databases, QFS defines a graph data model composed of files and their relationships. QFS incorporates Quasar, an XPATH-extended query language for searching the file system. Results from our QFS prototype show the effectiveness of this approach. Compared to the de facto standard, the QFS prototype shows superior ingest performance and comparable query performance on user metadata-intensive operations and superior performance on normal file metadata operations.

Persistence of Selected Pesticides used in Sugarcane Production in ...

African Journals Online (AJOL)

This study was conducted to monitor pesticide levels in soils and runoff water following treatment of a sugarcane field in the Northern Lake Victoria watershed. Soil and water samples were collected over a period of 304 days after planting of the sugarcane and analysed for pesticide residues. In soils, glyphosate levels ...

Identification of virus isolates inducing mosaic of sugarcane in ...

African Journals Online (AJOL)

SAM

2014-03-19

Mar 19, 2014 ... (JGMV), maize dwarf mosaic virus (MDMV) and sorghum mosaic Virus (SrMV) is an economically important viral disease of sugarcane ... race (“Bahausa”) and the least infected was the white land race (“fararkwama”). ... stripes symptoms on leaf blade and white stripe on stem in infected sugarcane and are ...

Improving Access to NASA Earth Science Data through Collaborative Metadata Curation

Science.gov (United States)

Sisco, A. W.; Bugbee, K.; Shum, D.; Baynes, K.; Dixon, V.; Ramachandran, R.

2017-12-01

The NASA-developed Common Metadata Repository (CMR) is a high-performance metadata system that currently catalogs over 375 million Earth science metadata records. It serves as the authoritative metadata management system of NASA's Earth Observing System Data and Information System (EOSDIS), enabling NASA Earth science data to be discovered and accessed by a worldwide user community. The size of the EOSDIS data archive is steadily increasing, and the ability to manage and query this archive depends on the input of high quality metadata to the CMR. Metadata that does not provide adequate descriptive information diminishes the CMR's ability to effectively find and serve data to users. To address this issue, an innovative and collaborative review process is underway to systematically improve the completeness, consistency, and accuracy of metadata for approximately 7,000 data sets archived by NASA's twelve EOSDIS data centers, or Distributed Active Archive Centers (DAACs). The process involves automated and manual metadata assessment of both collection and granule records by a team of Earth science data specialists at NASA Marshall Space Flight Center. The team communicates results to DAAC personnel, who then make revisions and reingest improved metadata into the CMR. Implementation of this process relies on a network of interdisciplinary collaborators leveraging a variety of communication platforms and long-range planning strategies. Curating metadata at this scale and resolving metadata issues through community consensus improves the CMR's ability to serve current and future users and also introduces best practices for stewarding the next generation of Earth Observing System data. This presentation will detail the metadata curation process, its outcomes thus far, and also share the status of ongoing curation activities.

Optimized Subsurface Irrigation System: The Future of Sugarcane Irrigation

Directory of Open Access Journals (Sweden)

M. H. J. P. Gunarathna

2018-03-01

Full Text Available Climate change may harm the growth and yield of sugarcane (Saccharum officinarum L. without the introduction of appropriate irrigation facilities. Therefore, new irrigation methods should be developed to maximize water use efficiency and reduce operational costs. OPSIS (optimized subsurface irrigation system is a new solar-powered automatic subsurface irrigation system that creates a phreatic zone below crop roots and relies on capillarity to supply water to the root zone. It is designed for upland crops such as sugarcane. We investigated the performance of OPSIS for irrigating sugarcane and evaluated its performance against sprinkler irrigation under subtropical conditions. We conducted field experiments in Okinawa, Japan, over the period from 2013 to 2016 and took measurements during spring- and summer-planted main crops and two ratoon crops of the spring-planted crop. Compared with sprinkler irrigation, OPSIS produced a significantly higher fresh cane yield, consumed less irrigation water and provided a higher irrigation water use efficiency. We conclude that OPSIS could be adopted as a sustainable solution to sugarcane irrigation in Okinawa and similar environments.

Application of radiation processing to produce biotic elicitor for sugarcane in Vietnam

International Nuclear Information System (INIS)

Nguyen, Quoc Hien; Tran, Tich Canh; Truong, Thi Hanh; Vo, Thi Kim Lang; Dang, Van Phu; Cao, Anh Duong

2007-01-01

Sugarcane is the main raw material for production of sugar and ethanol. In Vietnam, it was reported in 1998 that the area for sugarcane growth was about 257,000ha. Up to now, the biotic elicitor, oligosaccharide has not been used for sugarcane yet. This study has been carried out to investigate the elicitation and the growth promotion effect of irradiated chitosan (oligochitosan) for sugarcane. The field test results indicated that alpha chitosan (shrimp shell) and beta chitosan (squid pen) samples with the content of water soluble oligomer of about 70% were the most effective. The disease ratio of sugarcane tree-trunk treated with irradiated chitosan before harvesting time decreased to 30-40% compared to non-treated one (100%). In addition, the productivity of sugarcane increased to about 20%. The combination of metal ion (Zn ++ , Cu ++ ) with oligochitosan did not show the synergic elicitation effect. The results revealed that biotic elicitor made from chitosan by radiation degradation method is very promising for field application not only for protection of disease infection but also for growth promotion of plants. It is believed that this biotic elicitor could be largely used for safe and sustainable development of agriculture. (author)

ASDC Collaborations and Processes to Ensure Quality Metadata and Consistent Data Availability

Science.gov (United States)

Trapasso, T. J.

2017-12-01

With the introduction of new tools, faster computing, and less expensive storage, increased volumes of data are expected to be managed with existing or fewer resources. Metadata management is becoming a heightened challenge from the increase in data volume, resulting in more metadata records needed to be curated for each product. To address metadata availability and completeness, NASA ESDIS has taken significant strides with the creation of the United Metadata Model (UMM) and Common Metadata Repository (CMR). These UMM helps address hurdles experienced by the increasing number of metadata dialects and the CMR provides a primary repository for metadata so that required metadata fields can be served through a growing number of tools and services. However, metadata quality remains an issue as metadata is not always inherent to the end-user. In response to these challenges, the NASA Atmospheric Science Data Center (ASDC) created the Collaboratory for quAlity Metadata Preservation (CAMP) and defined the Product Lifecycle Process (PLP) to work congruently. CAMP is unique in that it provides science team members a UI to directly supply metadata that is complete, compliant, and accurate for their data products. This replaces back-and-forth communication that often results in misinterpreted metadata. Upon review by ASDC staff, metadata is submitted to CMR for broader distribution through Earthdata. Further, approval of science team metadata in CAMP automatically triggers the ASDC PLP workflow to ensure appropriate services are applied throughout the product lifecycle. This presentation will review the design elements of CAMP and PLP as well as demonstrate interfaces to each. It will show the benefits that CAMP and PLP provide to the ASDC that could potentially benefit additional NASA Earth Science Data and Information System (ESDIS) Distributed Active Archive Centers (DAACs).

Metadata Authoring with Versatility and Extensibility

Science.gov (United States)

Pollack, Janine; Olsen, Lola

2004-01-01

NASA's Global Change Master Directory (GCMD) assists the scientific community in the discovery of and linkage to Earth science data sets and related services. The GCMD holds over 13,800 data set descriptions in Directory Interchange Format (DIF) and 700 data service descriptions in Service Entry Resource Format (SERF), encompassing the disciplines of geology, hydrology, oceanography, meteorology, and ecology. Data descriptions also contain geographic coverage information and direct links to the data, thus allowing researchers to discover data pertaining to a geographic location of interest, then quickly acquire those data. The GCMD strives to be the preferred data locator for world-wide directory-level metadata. In this vein, scientists and data providers must have access to intuitive and efficient metadata authoring tools. Existing GCMD tools are attracting widespread usage; however, a need for tools that are portable, customizable and versatile still exists. With tool usage directly influencing metadata population, it has become apparent that new tools are needed to fill these voids. As a result, the GCMD has released a new authoring tool allowing for both web-based and stand-alone authoring of descriptions. Furthermore, this tool incorporates the ability to plug-and-play the metadata format of choice, offering users options of DIF, SERF, FGDC, ISO or any other defined standard. Allowing data holders to work with their preferred format, as well as an option of a stand-alone application or web-based environment, docBUlLDER will assist the scientific community in efficiently creating quality data and services metadata.

Sugarcane outgrowers in Ethiopia

DEFF Research Database (Denmark)

Assefa Wendimu, Mengistu; Henningsen, Arne; Gibbon, Peter

smallholders. We apply matching methods to analyze the effects of a public sugarcane outgrower scheme in Ethiopia. Participation in the outgrower scheme significantly reduces the income and asset stocks of outgrowers who contributed irrigated land to the outgrower scheme, while the effect was insignificant...

POOR FERTILITY, SHORT LONGEVITY AND LOW ABUNDANCE IN THE SOIL SEED BANK LIMIT VOLUNTEER SUGARCANE FROM SEED

Directory of Open Access Journals (Sweden)

Johann S Pierre

2015-06-01

Full Text Available The recent development of genetically modified sugarcane, with the aim of commercial production, requires an understanding of the potential risks of increased weediness of sugarcane as a result of spread and persistence of volunteer sugarcane. As sugarcane is propagated vegetatively from pieces of stalk and the seed plays no part in the production cycle the fate of seed in the environment is yet to be studied. In this study sugarcane seed samples, collected in fields over a two year period, were used to determine the overall level of sugarcane fertility, seed dormancy and longevity of seed under field conditions. A survey of the soil seed bank in and around sugarcane fields was used to quantify the presence of sugarcane seeds and to identify and quantify the weeds that would compete with sugarcane seedlings. We demonstrated that under field conditions, sugarcane has low fertility and produces non-dormant seed. The viability of the seeds decayed rapidly (half life between 1.5 and 2.1 months. This means that, in Australia, sugarcane seeds die before they encounter climatic conditions that could allow them to germinate and establish. Finally, the soil seed bank analysis revealed there were very few sugarcane seeds relative to the large number of weed seeds that exert a large competitive effect. In conclusion, low fertility, short persistence and poor ability to compete limit the capacity of sugarcane seed spread and persistence in the environment.

Poor Fertility, Short Longevity, and Low Abundance in the Soil Seed Bank Limit Volunteer Sugarcane from Seed.

Science.gov (United States)

Pierre, Johann S; Perroux, Jai; Whan, Alex; Rae, Anne L; Bonnett, Graham D

2015-01-01

The recent development of genetically modified sugarcane, with the aim of commercial production, requires an understanding of the potential risks of increased weediness of sugarcane as a result of spread and persistence of volunteer sugarcane. As sugarcane is propagated vegetatively from pieces of stalk and the seed plays no part in the production cycle, the fate of seed in the environment is yet to be studied. In this study, sugarcane seed samples, collected in fields over a 2-year period, were used to determine the overall level of sugarcane fertility, seed dormancy, and longevity of seed under field conditions. A survey of the soil seed bank in and around sugarcane fields was used to quantify the presence of sugarcane seeds and to identify and quantify the weeds that would compete with sugarcane seedlings. We demonstrated that under field conditions, sugarcane has low fertility and produces non-dormant seed. The viability of the seeds decayed rapidly (half-life between 1.5 and 2.1 months). This means that, in Australia, sugarcane seeds die before they encounter climatic conditions that could allow them to germinate and establish. Finally, the soil seed bank analysis revealed that there were very few sugarcane seeds relative to the large number of weed seeds that exert a large competitive effect. In conclusion, low fertility, short persistence, and poor ability to compete limit the capacity of sugarcane seed spread and persistence in the environment.

Making the Case for Embedded Metadata in Digital Images

DEFF Research Database (Denmark)

Smith, Kari R.; Saunders, Sarah; Kejser, U.B.

2014-01-01

This paper discusses the standards, methods, use cases, and opportunities for using embedded metadata in digital images. In this paper we explain the past and current work engaged with developing specifications, standards for embedding metadata of different types, and the practicalities of data...... exchange in heritage institutions and the culture sector. Our examples and findings support the case for embedded metadata in digital images and the opportunities for such use more broadly in non-heritage sectors as well. We encourage the adoption of embedded metadata by digital image content creators...... and curators as well as those developing software and hardware that support the creation or re-use of digital images. We conclude that the usability of born digital images as well as physical objects that are digitized can be extended and the files preserved more readily with embedded metadata....

Interpreting the ASTM 'content standard for digital geospatial metadata'

Science.gov (United States)

Nebert, Douglas D.

1996-01-01

ASTM and the Federal Geographic Data Committee have developed a content standard for spatial metadata to facilitate documentation, discovery, and retrieval of digital spatial data using vendor-independent terminology. Spatial metadata elements are identifiable quality and content characteristics of a data set that can be tied to a geographic location or area. Several Office of Management and Budget Circulars and initiatives have been issued that specify improved cataloguing of and accessibility to federal data holdings. An Executive Order further requires the use of the metadata content standard to document digital spatial data sets. Collection and reporting of spatial metadata for field investigations performed for the federal government is an anticipated requirement. This paper provides an overview of the draft spatial metadata content standard and a description of how the standard could be applied to investigations collecting spatially-referenced field data.

Making the Case for Embedded Metadata in Digital Images

DEFF Research Database (Denmark)

Smith, Kari R.; Saunders, Sarah; Kejser, U.B.

2014-01-01

exchange in heritage institutions and the culture sector. Our examples and findings support the case for embedded metadata in digital images and the opportunities for such use more broadly in non-heritage sectors as well. We encourage the adoption of embedded metadata by digital image content creators......This paper discusses the standards, methods, use cases, and opportunities for using embedded metadata in digital images. In this paper we explain the past and current work engaged with developing specifications, standards for embedding metadata of different types, and the practicalities of data...... and curators as well as those developing software and hardware that support the creation or re-use of digital images. We conclude that the usability of born digital images as well as physical objects that are digitized can be extended and the files preserved more readily with embedded metadata....

Biomass of cocoa and sugarcane

Science.gov (United States)

Siswanto; Sumanto; Hartati, R. S.; Prastowo, B.

2017-05-01

The role of the agricultural sector is very important as the upstream addressing downstream sectors and national energy needs. The agricultural sector itself is also highly dependent on the availability of energy. Evolving from it then it must be policies and strategies for agricultural development Indonesia to forward particularly agriculture as producers as well as users of biomass energy or bioenergy for national development including agriculture balance with agriculture and food production. Exports of biomass unbridled currently include preceded by ignorance, indifference and the lack of scientific data and potential tree industry in the country. This requires adequate scientific supporting data. This study is necessary because currently there are insufficient data on the potential of biomass, including tree biomasanya detailing the benefits of bioenergy, feed and food is very necessary as a basis for future policy. Measurement of the main estate plants biomass such as cocoa and sugarcane be done in 2015. Measurements were also conducted on its lignocellulose content. Tree biomass sugarcane potential measured consist of leaves, stems and roots, with the weight mostly located on the stem. Nevertheless, not all the potential of the stem is a good raw material for bioethanol. For cocoa turned out leaves more prospective because of its adequate hemicellulose content. For sugarcane, leaf buds contain a good indicator of digestion of feed making it more suitable for feed.

Soil carbon, nitrogen and phosphorus changes under sugarcane expansion in Brazil.

Science.gov (United States)

Franco, André L C; Cherubin, Maurício R; Pavinato, Paulo S; Cerri, Carlos E P; Six, Johan; Davies, Christian A; Cerri, Carlos C

2015-05-15

Historical data of land use change (LUC) indicated that the sugarcane expansion has mainly displaced pasture areas in Central-Southern Brazil, globally the largest producer, and that those pastures were prior established over native forests in the Cerrado biome. We sampled 3 chronosequences of land use comprising native vegetation (NV), pasture (PA), and sugarcane crop (SC) in the sugarcane expansion region to assess the effects of LUC on soil carbon, nitrogen, and labile phosphorus pools. Thirty years after conversion of NV to PA, we found significant losses of original soil organic matter (SOM) from NV, while insufficient new organic matter was introduced from tropical grasses into soil to offset the losses, reflecting in a net C emission of 0.4 Mg ha(-1)yr(-1). These findings added to decreases in (15)N signal indicated that labile portions of SOM are preserved under PA. Afterwards, in the firsts five years after LUC from PA to SC, sparse variations were found in SOM levels. After more than 20 years of sugarcane crop, however, there were losses of 40 and 35% of C and N stocks, respectively, resulting in a rate of C emission of 1.3 Mg ha(-1)yr(-1) totally caused by the respiration of SOM from C4-cycle plants. In addition, conversion of pastures to sugarcane mostly increased (15)N signal, indicating an accumulation of more recalcitrant SOM under sugarcane. The microbe- and plant-available P showed site-specific responses to LUC as a function of different P-input managements, with the biological pool mostly accounting for more than 50% of the labile P in both anthropic land uses. With the projections of 6.4 Mha of land required by 2021 for sugarcane expansion in Brazil to achieve ethanol's demand, this explanatory approach to the responses of SOM to LUC will contribute for an accurate assessment of the CO₂ balance of sugarcane ethanol. Copyright © 2015 Elsevier B.V. All rights reserved.

A Novel Architecture of Metadata Management System Based on Intelligent Cache

Institute of Scientific and Technical Information of China (English)

SONG Baoyan; ZHAO Hongwei; WANG Yan; GAO Nan; XU Jin

2006-01-01

This paper introduces a novel architecture of metadata management system based on intelligent cache called Metadata Intelligent Cache Controller (MICC). By using an intelligent cache to control the metadata system, MICC can deal with different scenarios such as splitting and merging of queries into sub-queries for available metadata sets in local, in order to reduce access time of remote queries. Application can find results patially from local cache and the remaining portion of the metadata that can be fetched from remote locations. Using the existing metadata, it can not only enhance the fault tolerance and load balancing of system effectively, but also improve the efficiency of access while ensuring the access quality.

Sugarcane Aphid in Sorghum

Science.gov (United States)

Evers, Logan

2018-01-01

This article is intended for readers in the production agriculture industry who deal with grain sorghum throughout the growing season. This publication will discuss the impacts of the sugarcane aphid in various crops and the ways to manage and identify them as they continue to advance north.

Production of Citric Acid from Solid State Fermentation of Sugarcane ...

African Journals Online (AJOL)

Aspergillus niger is the leading microorganism of choice for citric acid production. Sugarcane waste was used as substrate under solid state fermentation to comparatively evaluate the citric acid production capacity of Aspergillus niger isolates and the indigenous microflora in the sugarcane waste. Known optimal cultural ...

Potential of diazotrophic bacteria associated with sugarcane for energycane production

Science.gov (United States)

Crosses between sugarcane and wild species of Saccharum and other closely related genera are made to introgress new genes from the wild species into sugarcane. Characteristics of the progeny from these crosses may include increased biomass and the ability to be grown in a broader geographical range ...

The sugarcane-biofuel expansion and dairy farmers' responses in Brazil

NARCIS (Netherlands)

Monteiro Novo, A.L.; Jansen, K.; Slingerland, M.A.

2012-01-01

The expansion of sugarcane for biofuels is a highly contentious issue. The growth of sugarcane area has occurred simultaneously with a reduction of dairy production in São Paulo state, the primary production region for sugar and ethanol in Brazil. This paper analyses different dairy farm rationales

Leveraging Metadata to Create Better Web Services

Science.gov (United States)

Mitchell, Erik

2012-01-01

Libraries have been increasingly concerned with data creation, management, and publication. This increase is partly driven by shifting metadata standards in libraries and partly by the growth of data and metadata repositories being managed by libraries. In order to manage these data sets, libraries are looking for new preservation and discovery…

Louisiana sugarcane entomology: A look at the back and a peek at the future

Science.gov (United States)

Controlling insect pests is an important consideration for sugarcane farmers seeking to minimize losses and maximize profits. Research in managing insects has been conducted for almost as long as sugarcane has been grown in Louisiana. This presentation reviews Louisiana sugarcane entomology from the...

Physical-chemical and microbiological changes in Cerrado Soil under differing sugarcane harvest management systems

NARCIS (Netherlands)

Rachid, Caio T. C. C.; Piccolo, Marisa C.; Leite, Deborah Catharine A.; Balieiro, Fabiano C.; Coutinho, Heitor Luiz C.; van Elsas, Jan Dirk; Peixoto, Raquel S.; Rosado, Alexandre S.

2012-01-01

Background: Sugarcane cultivation plays an important role in Brazilian economy, and it is expanding fast, mainly due to the increasing demand for ethanol production. In order to understand the impact of sugarcane cultivation and management, we studied sugarcane under different management regimes

A Metadata Schema for Geospatial Resource Discovery Use Cases

Directory of Open Access Journals (Sweden)

Darren Hardy

2014-07-01

Full Text Available We introduce a metadata schema that focuses on GIS discovery use cases for patrons in a research library setting. Text search, faceted refinement, and spatial search and relevancy are among GeoBlacklight's primary use cases for federated geospatial holdings. The schema supports a variety of GIS data types and enables contextual, collection-oriented discovery applications as well as traditional portal applications. One key limitation of GIS resource discovery is the general lack of normative metadata practices, which has led to a proliferation of metadata schemas and duplicate records. The ISO 19115/19139 and FGDC standards specify metadata formats, but are intricate, lengthy, and not focused on discovery. Moreover, they require sophisticated authoring environments and cataloging expertise. Geographic metadata standards target preservation and quality measure use cases, but they do not provide for simple inter-institutional sharing of metadata for discovery use cases. To this end, our schema reuses elements from Dublin Core and GeoRSS to leverage their normative semantics, community best practices, open-source software implementations, and extensive examples already deployed in discovery contexts such as web search and mapping. Finally, we discuss a Solr implementation of the schema using a "geo" extension to MODS.

Managing ebook metadata in academic libraries taming the tiger

CERN Document Server

Frederick, Donna E

2016-01-01

Managing ebook Metadata in Academic Libraries: Taming the Tiger tackles the topic of ebooks in academic libraries, a trend that has been welcomed by students, faculty, researchers, and library staff. However, at the same time, the reality of acquiring ebooks, making them discoverable, and managing them presents library staff with many new challenges. Traditional methods of cataloging and managing library resources are no longer relevant where the purchasing of ebooks in packages and demand driven acquisitions are the predominant models for acquiring new content. Most academic libraries have a complex metadata environment wherein multiple systems draw upon the same metadata for different purposes. This complexity makes the need for standards-based interoperable metadata more important than ever. In addition to complexity, the nature of the metadata environment itself typically varies slightly from library to library making it difficult to recommend a single set of practices and procedures which would be releva...

International Metadata Initiatives: Lessons in Bibliographic Control.

Science.gov (United States)

Caplan, Priscilla

This paper looks at a subset of metadata schemes, including the Text Encoding Initiative (TEI) header, the Encoded Archival Description (EAD), the Dublin Core Metadata Element Set (DCMES), and the Visual Resources Association (VRA) Core Categories for visual resources. It examines why they developed as they did, major point of difference from…

Sugarcane exergy calculation; Calculo de la exergia de la cana de azucar

Energy Technology Data Exchange (ETDEWEB)

Fernandez P, Maria I.; Nebra P, Silvia A. [Universidade Estadual de Campinas, SP (Brazil). Faculdade de Engenharia Mecanica. Dept. de Energia]. E-mails: mariai@fem.unicamp.br.; sanebra@fem.unicamp.br; Martinez R, Arnaldo [Universidade de Oriente, Santiago de Cuba (Cuba). Facultad de Ingenieria Mecanica. Centro de Estudios de Refrigeracion Luis Fernando Brossard Perez]. E-mail: arnaldo@fim.ceefe.uo.edu.cu

2000-07-01

This paper presents a sugarcane exergy calculation, carried out considering the material as constituted by dry fiber and juice, being the last one that includes all the sucrose and water present in sugarcane. The variation intervals of sugarcane chemical composition and consequently the chemical composition of fibre and juice were obtained from a bibliography research. the finals results show that, the fibre exergy, as was considered totally dry and without sucrose, is a function of it chemical composition only. The quotient between the exergy and low calorific value has a middle value of 1,14 and the middle value of it exergy was 2329 kJ/kg of cane. Based on the environmental reference proposed by Szargut for the sugarcane juice exergy determination, it was obtained that the mixture component of the juice exergy has no piratical influence in the total exergy juice value, being the value of the reactive exergy component the determining of a middle value of sugarcane juice exergy of 2814,25 kJ/kg of juice and 2380Kj/Kg of cane. The sugarcane exergy value obtained for 8-18% of fiber, 75-82% of water and 14.5-22% of sucrose was 4709Kj/kg of cane. (author)

Building a Disciplinary Metadata Standards Directory

Directory of Open Access Journals (Sweden)

Alexander Ball

2014-07-01

Full Text Available The Research Data Alliance (RDA Metadata Standards Directory Working Group (MSDWG is building a directory of descriptive, discipline-specific metadata standards. The purpose of the directory is to promote the discovery, access and use of such standards, thereby improving the state of research data interoperability and reducing duplicative standards development work.This work builds upon the UK Digital Curation Centre's Disciplinary Metadata Catalogue, a resource created with much the same aim in mind. The first stage of the MSDWG's work was to update and extend the information contained in the catalogue. In the current, second stage, a new platform is being developed in order to extend the functionality of the directory beyond that of the catalogue, and to make it easier to maintain and sustain. Future work will include making the directory more amenable to use by automated tools.

Treating metadata as annotations: separating the content markup from the content

Directory of Open Access Journals (Sweden)

Fredrik Paulsson

2007-11-01

Full Text Available The use of digital learning resources creates an increasing need for semantic metadata, describing the whole resource, as well as parts of resources. Traditionally, schemas such as Text Encoding Initiative (TEI have been used to add semantic markup for parts of resources. This is not sufficient for use in a ”metadata ecology”, where metadata is distributed, coherent to different Application Profiles, and added by different actors. A new methodology, where metadata is “pointed in” as annotations, using XPointers, and RDF is proposed. A suggestion for how such infrastructure can be implemented, using existing open standards for metadata, and for the web is presented. We argue that such methodology and infrastructure is necessary to realize the decentralized metadata infrastructure needed for a “metadata ecology".

A Generic Metadata Editor Supporting System Using Drupal CMS

Science.gov (United States)

Pan, J.; Banks, N. G.; Leggott, M.

2011-12-01

Metadata handling is a key factor in preserving and reusing scientific data. In recent years, standardized structural metadata has become widely used in Geoscience communities. However, there exist many different standards in Geosciences, such as the current version of the Federal Geographic Data Committee's Content Standard for Digital Geospatial Metadata (FGDC CSDGM), the Ecological Markup Language (EML), the Geography Markup Language (GML), and the emerging ISO 19115 and related standards. In addition, there are many different subsets within the Geoscience subdomain such as the Biological Profile of the FGDC (CSDGM), or for geopolitical regions, such as the European Profile or the North American Profile in the ISO standards. It is therefore desirable to have a software foundation to support metadata creation and editing for multiple standards and profiles, without re-inventing the wheels. We have developed a software module as a generic, flexible software system to do just that: to facilitate the support for multiple metadata standards and profiles. The software consists of a set of modules for the Drupal Content Management System (CMS), with minimal inter-dependencies to other Drupal modules. There are two steps in using the system's metadata functions. First, an administrator can use the system to design a user form, based on an XML schema and its instances. The form definition is named and stored in the Drupal database as a XML blob content. Second, users in an editor role can then use the persisted XML definition to render an actual metadata entry form, for creating or editing a metadata record. Behind the scenes, the form definition XML is transformed into a PHP array, which is then rendered via Drupal Form API. When the form is submitted the posted values are used to modify a metadata record. Drupal hooks can be used to perform custom processing on metadata record before and after submission. It is trivial to store the metadata record as an actual XML file

The Branding of Sugarcane Juice in India

Directory of Open Access Journals (Sweden)

R. Sinha

2014-06-01

Full Text Available Sugarcane juice is traditionally sold in India by roadside vendors, often in unhygienic conditions. That’s why a few entrepreneurs have taken the initiative venturing into the marketing of branded sugarcane juice through a chain of franchised outlets. Initial indications are that this model is headed for success. Pune, Kolhapur, more known for its leather chappals, has also been blessed with an abundance of milk, water and sugar, which has made the region the nation's kitchen for many years. The Warana milk producers' cooperative located here has lived up to this reputation. It has been a contract manufacturer for products such as Cadbury's Bournvita, butter for Britannia Industries and Soya milk for Ruchi Soya. Now, the cooperative is preparing to assert its own identity through the launch of Warana Joy, its national brand. Among its new products is sugarcane juice in aseptic packs (Tetra Pak. This article outlines the development of this business; the opportunities and threats faced and also offer suggestions for the growth in this market.

The Branding of Sugarcane Juice in India

Directory of Open Access Journals (Sweden)

Rajendra Sinha

2014-01-01

Full Text Available Sugarcane juice is traditionally sold in India by roadside vendors, often in unhygienic conditions. That’s why a few entrepreneurs have taken the initiative venturing into the marketing of branded sugarcane juice through a chain of franchised outlets. Initial indications are that this model is headed for success. Pune, Kolhapur, more known for its leather chappals, has also been blessed with an abundance of milk, water and sugar, which has made the region the nation's kitchen for many years. The Warana milk producers' cooperative located here has lived up to this reputation. It has been a contract manufacturer for products such as Cadbury's Bournvita, butter for Britannia Industries and Soya milk for Ruchi Soya. Now, the cooperative is preparing to assert its own identity through the launch of Warana Joy, its national brand. Among its new products is sugarcane juice in aseptic packs (Tetra Pak. This article outlines the development of this business; the opportunities and threats faced and also offer suggestions for the growth in this market.

Distributed metadata in a high performance computing environment

Science.gov (United States)

Bent, John M.; Faibish, Sorin; Zhang, Zhenhua; Liu, Xuezhao; Tang, Haiying

2017-07-11

A computer-executable method, system, and computer program product for managing meta-data in a distributed storage system, wherein the distributed storage system includes one or more burst buffers enabled to operate with a distributed key-value store, the co computer-executable method, system, and computer program product comprising receiving a request for meta-data associated with a block of data stored in a first burst buffer of the one or more burst buffers in the distributed storage system, wherein the meta data is associated with a key-value, determining which of the one or more burst buffers stores the requested metadata, and upon determination that a first burst buffer of the one or more burst buffers stores the requested metadata, locating the key-value in a portion of the distributed key-value store accessible from the first burst buffer.

Metadata Design in the New PDS4 Standards - Something for Everybody

Science.gov (United States)

Raugh, Anne C.; Hughes, John S.

2015-11-01

The Planetary Data System (PDS) archives, supports, and distributes data of diverse targets, from diverse sources, to diverse users. One of the core problems addressed by the PDS4 data standard redesign was that of metadata - how to accommodate the increasingly sophisticated demands of search interfaces, analytical software, and observational documentation into label standards without imposing limits and constraints that would impinge on the quality or quantity of metadata that any particular observer or team could supply. And yet, as an archive, PDS must have detailed documentation for the metadata in the labels it supports, or the institutional knowledge encoded into those attributes will be lost - putting the data at risk.The PDS4 metadata solution is based on a three-step approach. First, it is built on two key ISO standards: ISO 11179 "Information Technology - Metadata Registries", which provides a common framework and vocabulary for defining metadata attributes; and ISO 14721 "Space Data and Information Transfer Systems - Open Archival Information System (OAIS) Reference Model", which provides the framework for the information architecture that enforces the object-oriented paradigm for metadata modeling. Second, PDS has defined a hierarchical system that allows it to divide its metadata universe into namespaces ("data dictionaries", conceptually), and more importantly to delegate stewardship for a single namespace to a local authority. This means that a mission can develop its own data model with a high degree of autonomy and effectively extend the PDS model to accommodate its own metadata needs within the common ISO 11179 framework. Finally, within a single namespace - even the core PDS namespace - existing metadata structures can be extended and new structures added to the model as new needs are identifiedThis poster illustrates the PDS4 approach to metadata management and highlights the expected return on the development investment for PDS, users and data

Metabolonote: A wiki-based database for managing hierarchical metadata of metabolome analyses

Directory of Open Access Journals (Sweden)

Takeshi eAra

2015-04-01

Full Text Available Metabolomics—technology for comprehensive detection of small molecules in an organism—lags behind the other omics in terms of publication and dissemination of experimental data. Among the reasons for this are difficulty precisely recording information about complicated analytical experiments (metadata, existence of various databases with their own metadata descriptions, and low reusability of the published data, resulting in submitters (the researchers who generate the data being insufficiently motivated. To tackle these issues, we developed Metabolonote, a Semantic MediaWiki-based database designed specifically for managing metabolomic metadata. We also defined a metadata and data description format, called TogoMD, with an ID system that is required for unique access to each level of the tree-structured metadata such as study purpose, sample, analytical method, and data analysis. Separation of the management of metadata from that of data and permission to attach related information to the metadata provide advantages for submitters, readers, and database developers. The metadata are enriched with information such as links to comparable data, thereby functioning as a hub of related data resources. They also enhance not only readers' understanding and use of data, but also submitters' motivation to publish the data. The metadata are computationally shared among other systems via APIs, which facilitates the construction of novel databases by database developers. A permission system that allows publication of immature metadata and feedback from readers also helps submitters to improve their metadata. Hence, this aspect of Metabolonote, as a metadata preparation tool, is complementary to high-quality and persistent data repositories such as MetaboLights. A total of 808 metadata for analyzed data obtained from 35 biological species are published currently. Metabolonote and related tools are available free of cost at http://metabolonote.kazusa.or.jp/.

RB975242 and RB975201 - Late maturation sugarcane varieties

Directory of Open Access Journals (Sweden)

Monalisa Sampaio Carneiro

2016-11-01

Full Text Available The sugarcane varieties RB975201 and RB975242 were developed and released for harvest at the end of the season (late maturation in the CentralSouth region of Brazil. In specific environments, these varieties were compared with commercial standards in sugar yield per area. They are resistant to major sugarcane diseases and present the Bru1 gene of resistance to brown rust.

Forensic devices for activism: Metadata tracking and public proof

Directory of Open Access Journals (Sweden)

Lonneke van der Velden

2015-10-01

Full Text Available The central topic of this paper is a mobile phone application, ‘InformaCam’, which turns metadata from a surveillance risk into a method for the production of public proof. InformaCam allows one to manage and delete metadata from images and videos in order to diminish surveillance risks related to online tracking. Furthermore, it structures and stores the metadata in such a way that the documentary material becomes better accommodated to evidentiary settings, if needed. In this paper I propose InformaCam should be interpreted as a ‘forensic device’. By using the conceptualization of forensics and work on socio-technical devices the paper discusses how InformaCam, through a range of interventions, rearranges metadata into a technology of evidence. InformaCam explicitly recognizes mobile phones as context aware, uses their sensors, and structures metadata in order to facilitate data analysis after images are captured. Through these modifications it invents a form of ‘sensory data forensics'. By treating data in this particular way, surveillance resistance does more than seeking awareness. It becomes engaged with investigatory practices. Considering the extent by which states conduct metadata surveillance, the project can be seen as a timely response to the unequal distribution of power over data.

Signal transduction-related responses to phytohormones and environmental challenges in sugarcane

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Hemerly Adriana S

2007-03-01

Full Text Available Abstract Background Sugarcane is an increasingly economically and environmentally important C4 grass, used for the production of sugar and bioethanol, a low-carbon emission fuel. Sugarcane originated from crosses of Saccharum species and is noted for its unique capacity to accumulate high amounts of sucrose in its stems. Environmental stresses limit enormously sugarcane productivity worldwide. To investigate transcriptome changes in response to environmental inputs that alter yield we used cDNA microarrays to profile expression of 1,545 genes in plants submitted to drought, phosphate starvation, herbivory and N2-fixing endophytic bacteria. We also investigated the response to phytohormones (abscisic acid and methyl jasmonate. The arrayed elements correspond mostly to genes involved in signal transduction, hormone biosynthesis, transcription factors, novel genes and genes corresponding to unknown proteins. Results Adopting an outliers searching method 179 genes with strikingly different expression levels were identified as differentially expressed in at least one of the treatments analysed. Self Organizing Maps were used to cluster the expression profiles of 695 genes that showed a highly correlated expression pattern among replicates. The expression data for 22 genes was evaluated for 36 experimental data points by quantitative RT-PCR indicating a validation rate of 80.5% using three biological experimental replicates. The SUCAST Database was created that provides public access to the data described in this work, linked to tissue expression profiling and the SUCAST gene category and sequence analysis. The SUCAST database also includes a categorization of the sugarcane kinome based on a phylogenetic grouping that included 182 undefined kinases. Conclusion An extensive study on the sugarcane transcriptome was performed. Sugarcane genes responsive to phytohormones and to challenges sugarcane commonly deals with in the field were identified

Metadata Creation, Management and Search System for your Scientific Data

Science.gov (United States)

Devarakonda, R.; Palanisamy, G.

2012-12-01

Mercury Search Systems is a set of tools for creating, searching, and retrieving of biogeochemical metadata. Mercury toolset provides orders of magnitude improvements in search speed, support for any metadata format, integration with Google Maps for spatial queries, multi-facetted type search, search suggestions, support for RSS (Really Simple Syndication) delivery of search results, and enhanced customization to meet the needs of the multiple projects that use Mercury. Mercury's metadata editor provides a easy way for creating metadata and Mercury's search interface provides a single portal to search for data and information contained in disparate data management systems, each of which may use any metadata format including FGDC, ISO-19115, Dublin-Core, Darwin-Core, DIF, ECHO, and EML. Mercury harvests metadata and key data from contributing project servers distributed around the world and builds a centralized index. The search interfaces then allow the users to perform a variety of fielded, spatial, and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury is being used more than 14 different projects across 4 federal agencies. It was originally developed for NASA, with continuing development funded by NASA, USGS, and DOE for a consortium of projects. Mercury search won the NASA's Earth Science Data Systems Software Reuse Award in 2008. References: R. Devarakonda, G. Palanisamy, B.E. Wilson, and J.M. Green, "Mercury: reusable metadata management data discovery and access system", Earth Science Informatics, vol. 3, no. 1, pp. 87-94, May 2010. R. Devarakonda, G. Palanisamy, J.M. Green, B.E. Wilson, "Data sharing and retrieval using OAI-PMH", Earth Science Informatics DOI: 10.1007/s12145-010-0073-0, (2010);

Estimating Canopy Nitrogen Concentration in Sugarcane Using Field Imaging Spectroscopy

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Marc Souris

2012-06-01

Full Text Available The retrieval of nutrient concentration in sugarcane through hyperspectral remote sensing is widely known to be affected by canopy architecture. The goal of this research was to develop an estimation model that could explain the nitrogen variations in sugarcane with combined cultivars. Reflectance spectra were measured over the sugarcane canopy using a field spectroradiometer. The models were calibrated by a vegetation index and multiple linear regression. The original reflectance was transformed into a First-Derivative Spectrum (FDS and two absorption features. The results indicated that the sensitive spectral wavelengths for quantifying nitrogen content existed mainly in the visible, red edge and far near-infrared regions of the electromagnetic spectrum. Normalized Differential Index (NDI based on FDS_(750/700 and Ratio Spectral Index (RVI based on FDS_(724/700 are best suited for characterizing the nitrogen concentration. The modified estimation model, generated by the Stepwise Multiple Linear Regression (SMLR technique from FDS centered at 410, 426, 720, 754, and 1,216 nm, yielded the highest correlation coefficient value of 0.86 and Root Mean Square Error of the Estimate (RMSE value of 0.033%N (n = 90 with nitrogen concentration in sugarcane. The results of this research demonstrated that the estimation model developed by SMLR yielded a higher correlation coefficient with nitrogen content than the model computed by narrow vegetation indices. The strong correlation between measured and estimated nitrogen concentration indicated that the methods proposed in this study could be used for the reliable diagnosis of nitrogen quantity in sugarcane. Finally, the success of the field spectroscopy used for estimating the nutrient quality of sugarcane allowed an additional experiment using the polar orbiting hyperspectral data for the timely determination of crop nutrient status in rangelands without any requirement of prior

Survey data and metadata modelling using document-oriented NoSQL

Science.gov (United States)

Rahmatuti Maghfiroh, Lutfi; Gusti Bagus Baskara Nugraha, I.

2018-03-01

Survey data that are collected from year to year have metadata change. However it need to be stored integratedly to get statistical data faster and easier. Data warehouse (DW) can be used to solve this limitation. However there is a change of variables in every period that can not be accommodated by DW. Traditional DW can not handle variable change via Slowly Changing Dimension (SCD). Previous research handle the change of variables in DW to manage metadata by using multiversion DW (MVDW). MVDW is designed using relational model. Some researches also found that developing nonrelational model in NoSQL database has reading time faster than the relational model. Therefore, we propose changes to metadata management by using NoSQL. This study proposes a model DW to manage change and algorithms to retrieve data with metadata changes. Evaluation of the proposed models and algorithms result in that database with the proposed design can retrieve data with metadata changes properly. This paper has contribution in comprehensive data analysis with metadata changes (especially data survey) in integrated storage.

Using Metadata to Build Geographic Information Sharing Environment on Internet

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Chih-hong Sun

1999-12-01

Full Text Available Internet provides a convenient environment to share geographic information. Web GIS (Geographic Information System even provides users a direct access environment to geographic databases through Internet. However, the complexity of geographic data makes it difficult for users to understand the real content and the limitation of geographic information. In some cases, users may misuse the geographic data and make wrong decisions. Meanwhile, geographic data are distributed across various government agencies, academic institutes, and private organizations, which make it even more difficult for users to fully understand the content of these complex data. To overcome these difficulties, this research uses metadata as a guiding mechanism for users to fully understand the content and the limitation of geographic data. We introduce three metadata standards commonly used for geographic data and metadata authoring tools available in the US. We also review the current development of geographic metadata standard in Taiwan. Two metadata authoring tools are developed in this research, which will enable users to build their own geographic metadata easily.[Article content in Chinese

Protocol optimization for in vitro mass propagation of two sugarcane ...

African Journals Online (AJOL)

SAM

2014-03-19

Mar 19, 2014 ... The present study was initiated to optimize in vitro protocol for mass propagation of two commercial sugarcane clones (Co 449 and Co .... mass propagation of sugarcane genotypes grown in. Ethiopia, and due to this the .... transferred cultures showed multiple shooting with an average of 9.10 ± 0.10 shoots ...

Regional based estimates of water use for commercial sugar-cane ...

African Journals Online (AJOL)

The water use of rain-fed sugar-cane has come under the spotlight in South Africa, largely as a result of changes in legislation and a focus on streamflow reduction activities. In this study a robust relationship between sugar-cane yield and evapotranspiration derived by Thompson in 1976 is applied in conjunction with ...

Regional-based estimates of water use for commercial sugar-cane ...

African Journals Online (AJOL)

derived by Thompson in 1976 is applied in conjunction with regional cane production records in South Africa. These were used to provide regional estimates of water use of commercial rain-fed and irrigated sugar-cane as affected by environmental limitations. The mean water use of sugar-cane at an industry scale was 598 ...

Development of health information search engine based on metadata and ontology.

Science.gov (United States)

Song, Tae-Min; Park, Hyeoun-Ae; Jin, Dal-Lae

2014-04-01

The aim of the study was to develop a metadata and ontology-based health information search engine ensuring semantic interoperability to collect and provide health information using different application programs. Health information metadata ontology was developed using a distributed semantic Web content publishing model based on vocabularies used to index the contents generated by the information producers as well as those used to search the contents by the users. Vocabulary for health information ontology was mapped to the Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT), and a list of about 1,500 terms was proposed. The metadata schema used in this study was developed by adding an element describing the target audience to the Dublin Core Metadata Element Set. A metadata schema and an ontology ensuring interoperability of health information available on the internet were developed. The metadata and ontology-based health information search engine developed in this study produced a better search result compared to existing search engines. Health information search engine based on metadata and ontology will provide reliable health information to both information producer and information consumers.

Where is sugarcane cropping expanding in the brazilian cerrado, and why? A case study

Directory of Open Access Journals (Sweden)

MURILO R. DE ARRUDA

2017-08-01

Full Text Available ABSTRACT Sugarcane growing area in Brazil sharply expanded between 2000 and 2010 due to the increasing world demand for sugar and ethanol. Since this expansion of sugarcane is said to occur in areas covered by degraded pastures, it is likely not threatening the environment or food production. In order to verify this assumption, we investigate at farm and field levels which types of land use sugarcane cropping replaced between 2005 and 2010 and the reasons for farmers shifting or not shifting to sugarcane, as a case study in two counties in the state of Goiás. Within the studied period, sugarcane cropping expansion was related to large farms, lower risk perceived by farmers, and higher profitability compared with soybean and beef cattle-raising. For smallholders, particularly dairy farmers, the need to comply with the set-aside rules under Brazilian Forest Code (Código Florestal Brasileiro made a shift to sugarcane less attractive, as it would have forced them to reduce farm cultivable area, with loss of incomes. From 30,408 ha under sugarcane surveyed, 45.7% had used to be pastures, 31% had previously been pastures rotated with soybean and maize, and 23.3% had been cropped exclusively with soybean or maize.

In Interactive, Web-Based Approach to Metadata Authoring

Science.gov (United States)

Pollack, Janine; Wharton, Stephen W. (Technical Monitor)

2001-01-01

NASA's Global Change Master Directory (GCMD) serves a growing number of users by assisting the scientific community in the discovery of and linkage to Earth science data sets and related services. The GCMD holds over 8000 data set descriptions in Directory Interchange Format (DIF) and 200 data service descriptions in Service Entry Resource Format (SERF), encompassing the disciplines of geology, hydrology, oceanography, meteorology, and ecology. Data descriptions also contain geographic coverage information, thus allowing researchers to discover data pertaining to a particular geographic location, as well as subject of interest. The GCMD strives to be the preeminent data locator for world-wide directory level metadata. In this vein, scientists and data providers must have access to intuitive and efficient metadata authoring tools. Existing GCMD tools are not currently attracting. widespread usage. With usage being the prime indicator of utility, it has become apparent that current tools must be improved. As a result, the GCMD has released a new suite of web-based authoring tools that enable a user to create new data and service entries, as well as modify existing data entries. With these tools, a more interactive approach to metadata authoring is taken, as they feature a visual "checklist" of data/service fields that automatically update when a field is completed. In this way, the user can quickly gauge which of the required and optional fields have not been populated. With the release of these tools, the Earth science community will be further assisted in efficiently creating quality data and services metadata. Keywords: metadata, Earth science, metadata authoring tools

Collaborative Metadata Curation in Support of NASA Earth Science Data Stewardship

Science.gov (United States)

Sisco, Adam W.; Bugbee, Kaylin; le Roux, Jeanne; Staton, Patrick; Freitag, Brian; Dixon, Valerie

2018-01-01

Growing collection of NASA Earth science data is archived and distributed by EOSDIS’s 12 Distributed Active Archive Centers (DAACs). Each collection and granule is described by a metadata record housed in the Common Metadata Repository (CMR). Multiple metadata standards are in use, and core elements of each are mapped to and from a common model – the Unified Metadata Model (UMM). Work done by the Analysis and Review of CMR (ARC) Team.

Nutrient Partitioning and Stoichiometry in Unburnt Sugarcane Ratoon at Varying Yield Levels

Directory of Open Access Journals (Sweden)

José Marcos Leite

2016-04-01

Full Text Available Unraveling nutrient imbalances in contemporary agriculture is a research priority to improve whenever possible yield and nutrient use efficiency in sugarcane (Saccharum spp. systems while minimizing the costs of cultivation (e.g., use of fertilizers and environmental concerns. The main goal of this study was therefore to investigate biomass and nutrient [nitrogen (N, phosphorus (P, and potassium (K] content, partitioning, stoichiometry and internal efficiencies in sugarcane ratoon at varying yield levels. Three sites were established on highly weathered tropical soils located in the Southeast region of Brazil. At all sites, seasonal biomass and nutrient uptake patterns were synthesized from four sampling times taken throughout the sugarcane ratoon season. At all sites, in-season nutrient partitioning (in diverse plant components, internal efficiencies (yield to nutrient content ratio and nutrient ratios (N:P and N:K were determined at harvesting. Sugarcane exhibited three distinct phases of plant growth, as follows: lag, exponential-linear, and stationary. Across sites, nutrient requirement per unit of yield was 1.4 kg N, 0.24 kg P, and 2.7 kg K per Mg of stalk produced, but nutrient removal varied with soil nutrient status (based on soil plus fertilizer nutrient supply and crop demand (potential yield. Dry leaves had lower nutrient content (N, P, and K and broader N:P and N:K ratios when compared with tops and stalks plant fractions. Greater sugarcane yield and narrowed N:P ratio (6:1 were verified for tops of sugarcane when increasing both N and P content. High-yielding sugarcane systems were related to higher nutrient content and more balanced N:P (6:1 and N:K (0.5:1 ratios.

Chronic consumption of distilled sugarcane spirit induces anxiolytic-like effects in mice.

Science.gov (United States)

Sena, Maria Clecia P; Nunes, Fabíola C; Salvadori, Mirian G S Stiebbe; Carvalho, Cleyton Charles D; Morais, Liana Clebia S L; Braga, Valdir A

2011-01-01

Chronic ethanol consumption is a major public health problem throughout the world. We investigated the anxiolytic-like effects and the possible ever injury induced by the chronic consumption of ethanol or sugarcane spirit in mice. Adult mice were exposed to a two-bottle free-choice paradigm for 6 weeks. The mice in Group A (n = 16) had access to sugarcane spirit + distilled water, the mice in Group B (n = 15) had access to ethanol + distilled water, and the mice in Group C (control, n = 14) had access to distilled water + distilled water. The ethanol content in the beverages offered to Groups A and B was 2% for the first week, 5% for the second week and 10% for the remaining four weeks. At the end of the experimental period, the mice were evaluated using the elevated-plus maze and the hole-board test to assess their anxiety-related behaviors. We also determined the serum aspartate aminotransferase and alanine aminotransferase levels. In the elevated-plus maze, the time spent in the open arms was increased in the mice exposed to chronic ethanol (32 ± 8 vs. 7 ± 2 s, n = 9) or sugarcane spirit (36 ± 9 vs. 7 ± 2 s, n = 9) compared to the controls. In the hole-board test, the mice exposed to ethanol or sugarcane spirit displayed increases in their head-dipping frequency (16 ± 1 for the control group, 27 ± 2 for the ethanol group, and 31 ± 3 for the sugarcane-spirit group; n = 9 for each group). In addition, the mice exposed to sugarcane spirit displayed an increase in the aspartate aminotransferase / alanine aminotransferase ratio compared to the ethanol group (1.29 ± 0.17 for the control group and 2.67 ± 0.17 for the sugarcane spirit group; n = 8 for each group). The chronic consumption of sugarcane-spirit produces liver injury and anxiolytic-like effects and the possible liver injury in mice.

Chronic consumption of distilled sugarcane spirit induces anxiolytic-like effects in mice

Directory of Open Access Journals (Sweden)

Maria Clecia P. Sena

2011-01-01

Full Text Available OBJECTIVE: Chronic ethanol consumption is a major public health problem throughout the world. We investigated the anxiolytic-like effects and the possible ever injury induced by the chronic consumption of ethanol or sugarcane spirit in mice. METHOD: Adult mice were exposed to a two-bottle free-choice paradigm for 6 weeks. The mice in Group A (n = 16 had access to sugarcane spirit + distilled water, the mice in Group B (n = 15 had access to ethanol + distilled water, and the mice in Group C (control, n = 14 had access to distilled water + distilled water. The ethanol content in the beverages offered to Groups A and B was 2% for the first week, 5% for the second week and 10% for the remaining four weeks. At the end of the experimental period, the mice were evaluated using the elevated-plus maze and the hole-board test to assess their anxiety-related behaviors. We also determined the serum aspartate aminotransferase and alanine aminotransferase levels. RESULTS: In the elevated-plus maze, the time spent in the open arms was increased in the mice exposed to chronic ethanol (32 + 8 vs. 7 + 2 s, n = 9 or sugarcane spirit (36 + 9 vs. 7 + 2 s, n = 9 compared to the controls. In the hole-board test, the mice exposed to ethanol or sugarcane spirit displayed increases in their head-dipping frequency (16 + 1 for the control group, 27 + 2 for the ethanol group, and 31 + 3 for the sugarcane-spirit group; n = 9 for each group. In addition, the mice exposed to sugarcane spirit displayed an increase in the aspartate aminotransferase / alanine aminotransferase ratio compared to the ethanol group (1.29 + 0.17 for the control group and 2.67 + 0.17 for the sugarcane spirit group; n = 8 for each group. CONCLUSION: The chronic consumption of sugarcane-spirit produces liver injury and anxiolytic-like effects and the possible liver injury in mice.

Detection of Genetically Modified Sugarcane by Using Terahertz Spectroscopy and Chemometrics

Science.gov (United States)

Liu, J.; Xie, H.; Zha, B.; Ding, W.; Luo, J.; Hu, C.

2018-03-01

A methodology is proposed to identify genetically modified sugarcane from non-genetically modified sugarcane by using terahertz spectroscopy and chemometrics techniques, including linear discriminant analysis (LDA), support vector machine-discriminant analysis (SVM-DA), and partial least squares-discriminant analysis (PLS-DA). The classification rate of the above mentioned methods is compared, and different types of preprocessing are considered. According to the experimental results, the best option is PLS-DA, with an identification rate of 98%. The results indicated that THz spectroscopy and chemometrics techniques are a powerful tool to identify genetically modified and non-genetically modified sugarcane.

EPA Metadata Style Guide Keywords and EPA Organization Names

Science.gov (United States)

The following keywords and EPA organization names listed below, along with EPA’s Metadata Style Guide, are intended to provide suggestions and guidance to assist with the standardization of metadata records.

Discrimination of sugarcane according to cultivar by 1H NMR and chemometric analyses

Energy Technology Data Exchange (ETDEWEB)

Alves Filho, Elenilson G.; Silva, Lorena M.A.; Choze, Rafael; Liao, Luciano M. [Laboratorio de Ressonancia Magnetica Nuclear, Instituto de Quimica, Universidade Federal de Goias (UFG), Goiania, GO (Brazil); Honda, Neli K.; Alcantara, Glaucia B. [Departamento de Quimica, Universidade Federal de Mato Grosso do Sul (UFMS), Campo Grande, MS (Brazil)

2012-07-01

Several technologies for the development of new sugarcane cultivars have mainly focused on the increase in productivity and greater disease resistance. Sugarcane cultivars are usually identified by the organography of the leaves and stems, the analysis of peroxidase and esterase isoenzyme activities and the total soluble protein as well as soluble solid content. Nuclear magnetic resonance (NMR) associated with chemometric analysis has proven to be a valuable tool for cultivar assessment. Thus, this article describes the potential of chemometric analysis applied to 1H high resolution magic angle spinning (HRMAS) and NMR in solution for the investigation of sugarcane cultivars. For this purpose, leaves from eight different cultivars of sugarcane were investigated by {sup 1}H NMR spectroscopy in combination with chemometric analysis. The approach shows to be a useful tool for the distinction and classification of different sugarcane cultivars as well as to access the differences on its chemical composition. (author)

A structured approach to target starch solubilisation and hydrolysis for the sugarcane industry.

Science.gov (United States)

Cole, Marsha R; Rose, Ingrid; Chung, Yoo Jin; Eggleston, Gillian

2015-01-01

In sugarcane processing, starch is considered an impurity that negatively affects processing and reduces the quality of the sugar end-product. In the last decade, there has been a general world-wide increase in starch concentrations in sugarcane. Industrial α-amylases have been used for many years to mitigate issues arising from starch in the sugarcane industry. Mixed results have prompted further studies of the behaviour of different physical forms of starch and their interactions with α-amylases during processing. By using corn starch as a reference in model juices and syrups, processing parameters, activities, and hydrolysis of insoluble, swollen, and soluble starch forms were evaluated for two commercial α-amylases with high (HT) and intermediate (IT) temperature stability, respectively. The ability of starch to solubilise across a sugarcane factory is largely limited by increased Brix values. Optimum target locations and conditions for the application of α-amylases in sugarcane processing are discussed in detail. Published by Elsevier Ltd.

ATLAS Metadata Task Force

Energy Technology Data Exchange (ETDEWEB)

ATLAS Collaboration; Costanzo, D.; Cranshaw, J.; Gadomski, S.; Jezequel, S.; Klimentov, A.; Lehmann Miotto, G.; Malon, D.; Mornacchi, G.; Nemethy, P.; Pauly, T.; von der Schmitt, H.; Barberis, D.; Gianotti, F.; Hinchliffe, I.; Mapelli, L.; Quarrie, D.; Stapnes, S.

2007-04-04

This document provides an overview of the metadata, which are needed to characterizeATLAS event data at different levels (a complete run, data streams within a run, luminosity blocks within a run, individual events).

Dyniqx: a novel meta-search engine for metadata based cross search

OpenAIRE

Zhu, Jianhan; Song, Dawei; Eisenstadt, Marc; Barladeanu, Cristi; Rüger, Stefan

2008-01-01

The effect of metadata in collection fusion has not been sufficiently studied. In response to this, we present a novel meta-search engine called Dyniqx for metadata based cross search. Dyniqx exploits the availability of metadata in academic search services such as PubMed and Google Scholar etc for fusing search results from heterogeneous search engines. In addition, metadata from these search engines are used for generating dynamic query controls such as sliders and tick boxes etc which are ...

N-glycosylation in sugarcane

Directory of Open Access Journals (Sweden)

Maia Ivan G.

2001-01-01

Full Text Available The N-linked glycosylation of secretory and membrane proteins is the most complex posttranslational modification known to occur in eukaryotic cells. It has been shown to play critical roles in modulating protein function. Although this important biological process has been extensively studied in mammals, much less is known about this biosynthetic pathway in plants. The enzymes involved in plant N-glycan biosynthesis and processing are still not well defined and the mechanism of their genetic regulation is almost completely unknown. In this paper we describe our first attempt to understand the N-linked glycosylation mechanism in a plant species by using the data generated by the Sugarcane Expressed Sequence Tag (SUCEST project. The SUCEST database was mined for sugarcane gene products potentially involved in the N-glycosylation pathway. This approach has led to the identification and functional assignment of 90 expressed sequence tag (EST clusters sharing significant sequence similarity with the enzymes involved in N-glycan biosynthesis and processing. The ESTs identified were also analyzed to establish their relative abundance.

Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse

Directory of Open Access Journals (Sweden)

Goldman Gustavo H

2011-10-01

Full Text Available Abstract Background Considering that the costs of cellulases and hemicellulases contribute substantially to the price of bioethanol, new studies aimed at understanding and improving cellulase efficiency and productivity are of paramount importance. Aspergillus niger has been shown to produce a wide spectrum of polysaccharide hydrolytic enzymes. To understand how to improve enzymatic cocktails that can hydrolyze pretreated sugarcane bagasse, we used a genomics approach to investigate which genes and pathways are transcriptionally modulated during growth of A. niger on steam-exploded sugarcane bagasse (SEB. Results Herein we report the main cellulase- and hemicellulase-encoding genes with increased expression during growth on SEB. We also sought to determine whether the mRNA accumulation of several SEB-induced genes encoding putative transporters is induced by xylose and dependent on glucose. We identified 18 (58% of A. niger predicted cellulases and 21 (58% of A. niger predicted hemicellulases cellulase- and hemicellulase-encoding genes, respectively, that were highly expressed during growth on SEB. Conclusions Degradation of sugarcane bagasse requires production of many different enzymes which are regulated by the type and complexity of the available substrate. Our presently reported work opens new possibilities for understanding sugarcane biomass saccharification by A. niger hydrolases and for the construction of more efficient enzymatic cocktails for second-generation bioethanol.

Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse

Science.gov (United States)

2011-01-01

Background Considering that the costs of cellulases and hemicellulases contribute substantially to the price of bioethanol, new studies aimed at understanding and improving cellulase efficiency and productivity are of paramount importance. Aspergillus niger has been shown to produce a wide spectrum of polysaccharide hydrolytic enzymes. To understand how to improve enzymatic cocktails that can hydrolyze pretreated sugarcane bagasse, we used a genomics approach to investigate which genes and pathways are transcriptionally modulated during growth of A. niger on steam-exploded sugarcane bagasse (SEB). Results Herein we report the main cellulase- and hemicellulase-encoding genes with increased expression during growth on SEB. We also sought to determine whether the mRNA accumulation of several SEB-induced genes encoding putative transporters is induced by xylose and dependent on glucose. We identified 18 (58% of A. niger predicted cellulases) and 21 (58% of A. niger predicted hemicellulases) cellulase- and hemicellulase-encoding genes, respectively, that were highly expressed during growth on SEB. Conclusions Degradation of sugarcane bagasse requires production of many different enzymes which are regulated by the type and complexity of the available substrate. Our presently reported work opens new possibilities for understanding sugarcane biomass saccharification by A. niger hydrolases and for the construction of more efficient enzymatic cocktails for second-generation bioethanol. PMID:22008461

Effect of orange rust on sugarcane breeding program at canal Point

Science.gov (United States)

Orange rust of sugarcane (Saccharum spp. hybrids), caused by Puccinia kuehnii (W. Krüger) E.J. Butler, appeared in the Western Hemisphere ten years ago. Orange rust substantially reduces yields in susceptible sugarcane genotypes. Majority of the commercial cultivars were susceptible at the time of o...

A search for markers of sugarcane evolution

Directory of Open Access Journals (Sweden)

M. Bacci Jr.

2001-12-01

Full Text Available To determine the phylogenetic relationship between sugarcane cultivars and other members of the Saccharinae subtribe, we identified the fast evolving ITS1-5.8S-ITS2 (ITS = internal transcribed spacer; 5.8S = 5.8S ribosomal DNA region of the sugarcane genome in the Sugarcane Expressed Sequence Tag (SUCEST genome project database. Parsimony analysis utilizing this region and homologs belonging to the 23 closely related Andropogoneae currently deposited in the GenBank database has shown sugarcane as the sister group of Saccharum sinense. However, because there are few parsimony-informative characters and high homoplasy in the ITS1-5.8S-ITS2 region we were not able to determine with confidence the phylogenetic relationship between sugarcane and some of the remaining members of Saccharine subtribe. To find alternatives for the phylogenetic reconstruction of sugarcane evolutionary history, we selected 17 markers (nuclear, chloroplastic or mitochondrial from the SUCEST database of which apha-tubulin, ribosomal protein L16 (rpl16 and DNA-directed RNA polymerase beta chain (rpoC2 were found to have a low incidence of polymorphism and comparable, or even faster, rates of evolution than the ITS1-5.8S-ITS2 region. We suggest that these markers should be considered as preferential choices for phylogenetic studies of Saccharinae subtribe.Com o propósito de determinar a relação filogenética entre a cana-de-açúcar e membros da subtribo Saccharinae, a região gênica nuclear ITS1-5,8S-ITS2 (ITS: espaçador interno transcrito; 5,8S: DNA ribossomal 5.8S, com alta taxa evolutiva, foi identificada no banco de dados do projeto genoma "Sugarcane Expressed Sequence Tag" (SUCEST. Uma análise através do método de parcimônia, utilizando esta região e seqüências homólogas de 23 Andropogoneae retiradas da base de dados GenBank, indicou que a cana-de-açúcar é o grupo-irmão de Saccharum sinense. No entanto, devido à pequena quantidade de caracteres

A Shared Infrastructure for Federated Search Across Distributed Scientific Metadata Catalogs

Science.gov (United States)

Reed, S. A.; Truslove, I.; Billingsley, B. W.; Grauch, A.; Harper, D.; Kovarik, J.; Lopez, L.; Liu, M.; Brandt, M.

2013-12-01

The vast amount of science metadata can be overwhelming and highly complex. Comprehensive analysis and sharing of metadata is difficult since institutions often publish to their own repositories. There are many disjoint standards used for publishing scientific data, making it difficult to discover and share information from different sources. Services that publish metadata catalogs often have different protocols, formats, and semantics. The research community is limited by the exclusivity of separate metadata catalogs and thus it is desirable to have federated search interfaces capable of unified search queries across multiple sources. Aggregation of metadata catalogs also enables users to critique metadata more rigorously. With these motivations in mind, the National Snow and Ice Data Center (NSIDC) and Advanced Cooperative Arctic Data and Information Service (ACADIS) implemented two search interfaces for the community. Both the NSIDC Search and ACADIS Arctic Data Explorer (ADE) use a common infrastructure which keeps maintenance costs low. The search clients are designed to make OpenSearch requests against Solr, an Open Source search platform. Solr applies indexes to specific fields of the metadata which in this instance optimizes queries containing keywords, spatial bounds and temporal ranges. NSIDC metadata is reused by both search interfaces but the ADE also brokers additional sources. Users can quickly find relevant metadata with minimal effort and ultimately lowers costs for research. This presentation will highlight the reuse of data and code between NSIDC and ACADIS, discuss challenges and milestones for each project, and will identify creation and use of Open Source libraries.

Enriching The Metadata On CDS

CERN Document Server

Chhibber, Nalin

2014-01-01

The project report revolves around the open source software package called Invenio. It provides the tools for management of digital assets in a repository and drives CERN Document Server. Primary objective is to enhance the existing metadata in CDS with data from other libraries. An implicit part of this task is to manage disambiguation (within incoming data), removal of multiple entries and handle replications between new and existing records. All such elements and their corresponding changes are integrated within Invenio to make the upgraded metadata available on the CDS. Latter part of the report discuss some changes related to the Invenio code-base itself.

Analysis of the stress-inducible transcription factor SsNAC23 in sugarcane plants

Directory of Open Access Journals (Sweden)

Renata Fava Ditt

2011-08-01

Full Text Available Stresses such as cold and drought can impair plant yield and induce a highly complex array of responses. Sugarcane (Saccharum spp. is cultivated in tropical and subtropical areas and is considered a cold-sensitive plant. We previously showed that cold stress induces the expression of several genes in in vitro sugarcane plantlets. Here we characterize one of those genes, SsNAC23, a member of the NAC family of plant-specific transcription factors, which are induced by low temperature and other stresses in several plant species. The expression of SsNAC23 was induced in sugarcane plants exposed to low temperatures (4ºC. With the aim of further understanding the regulatory network in response to stress, we used the yeast two-hybrid system to identify sugarcane proteins that interact with SsNAC23. Using SsNAC23 as bait, we screened a cDNA expression library of sugarcane plants submitted to 4ºC for 48 h. Several interacting partners were identified, including stress-related proteins, increasing our knowledge on how sugarcane plants respond to cold stress. One of these interacting partners, a thioredoxin h1, offers insights into the regulation of SsNAC23 activity.

The impact of some physiomorphic characters of sugarcane genotypes on their resistance against sugarcane pyrilla, pyrilla perpusilla wlk. (lophopidae: homoptera)

International Nuclear Information System (INIS)

Rasul, A.; Hassan, M.; Suhail, A.; Sahi, S.T.

2010-01-01

Field trials were conducted in the Research Area, Directorate of Sugarcane, Ayub Agricultural Research Institute, Faisalabad to study he physio-morphic characters of sugarcane resistance to the sucking pest Pyrilla perpusilla. Twenty genotypes of sugarcane were tested for their resistance susceptibility against P. perpusilla, as a preliminary screening experiment, during 2006. Based on the population-density count, 3 genotypes, viz., HSF- 240, CPF-243 and S-2002-US-114 showing resistance responses, 3 genotypes viz. CPHS-35, S-2003-US-394 and S-2003-US-623 showing susceptible trends and 3 genotypes viz. S-2003-US-809, S-2002-US-140 and S- 2002-US-104 exerting intermediate trends against the pest under test were selected for the final screening trials during 2007.The genotype S-2003-US-623, was found to be comparatively susceptible; whereas, HSF-240, showed resistance responses. The leaf-width and cane length showed a positive and significant correlation whereas the leaf-spine density had a significant negative effect with pest-population. The Leaf-length and Cane-Diameter did not show a significant correlation with the pest population. (author)

Converting developing and mature sugarcane carbohydrates into ethanol

Energy Technology Data Exchange (ETDEWEB)

Rolz, Carlos; De Leon, Roberto [Biochemical Engineering Center, Research Institute, Universidad del Valle de Guatemala (Guatemala)

2010-10-15

Experiments were performed employing cane particles obtained from sugarcane at different growth stages until maturation measuring the amount of ethanol produced and the carbohydrate consumption in order to estimate the sugarcane growth stage where both parameters were optimized. Two non-flowering commercial cane varieties NA56 and PR752002 were cultivated and samples taken at different time intervals. Two Saccharomyces cerevisae strains were also compared in the trials. Sucrose was poorly consumed in young cane, which was an unexpected result. Fructose on the other hand was the hexose that remained in the medium at the end of the fermentations specially when using mature sugarcane. There was an increasing trend in ethanol production as a function of days after planting (DAP) as expected; however, a plateau was reached after 225 DAP and the maximum value obtained was between 300 and 325 DAP. When these figures were compared with the corresponding DAP used for sugar production, only 25 days less were needed in the field for maximum ethanol production. On the other hand, it was clear from the data that cane harvesting for ethanol production should not be done after the recommended DAP for commercial sugar production. If this is done, the excess fructose present will not be completely utilized by yeast. Finally, it was observed that the yeast with more affinity for sugarcane fibers showed better ethanol yields in all samples tested. (Copyright copyright 2010 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

Biotechnological interventions in sugarcane improvement: strategies, methods and progress

International Nuclear Information System (INIS)

Suprasanna, P.

2010-01-01

Work has been conducted towards employing in vitro culture system combined with radiation induced mutagenesis in the improvement of sugarcane. Several radiation induced mutants with agronomically desirable traits were isolated and evaluated under field conditions, besides studying abiotic stress responses using biochemical, physiological and molecular tools. This article describes the developments in the in vitro culture systems and related biotechnologies that are evolving as novel strategies in the recent years for use in sugarcane improvement

Phosphorus fertilization in sugarcane cultivation under different soil managements

OpenAIRE

Sousa Junior, Paulo R. de; Brunharo, Caio A. C. G.; Furlani, Carlos E. A.; Prado, Renato de M.; Maldonado Júnior, Walter; Zerbato, Cristiano

2017-01-01

ABSTRACT Soil preparation along with its chemical adjustment is the most important step in sugarcane plantation, especially because it provides proper conditions for plant development. The objective of the present research was to evaluate sugarcane response to the application of different phosphorus doses and their location, associated with both minimum soil tillage and conventional soil tillage. The experiment was conducted in a split-split-plot randomized block design, where the main plots ...

Sugarcane field residue and bagasse allelopathic impact on vegetable seed germination

Science.gov (United States)

The chemical interaction between plants, which is referred to as allelopathy, may result in the inhibition of plant growth and development. The objective of this research was to determine the allelopathic impact of sugarcane (Saccharum officinarum) var. ‘HoCP 96-540’ field residue and sugarcane baga...

The Theory and Implementation for Metadata in Digital Library/Museum

Directory of Open Access Journals (Sweden)

Hsueh-hua Chen

1998-12-01

Full Text Available Digital Libraries and Museums (DL/M have become one of the important research issues of Library and Information Science as well as other related fields. This paper describes the basic concepts of DL/M and briefly introduces the development of Taiwan Digital Museum Project. Based on the features of various collections, wediscuss how to maintain, to manage and to exchange metadata, especially from the viewpoint of users. We propose the draft of metadata, MICI (Metadata Interchange for Chinese Information , developed by ROSS (Resources Organization and SearchingSpecification team. Finally, current problems and future development of metadata will be touched.[Article content in Chinese

Impacts of sugarcane agriculture expansion over low-intensity cattle ranch pasture in Brazil on greenhouse gases.

Science.gov (United States)

Bento, Camila Bolfarini; Filoso, Solange; Pitombo, Leonardo Machado; Cantarella, Heitor; Rossetto, Raffaella; Martinelli, Luiz Antonio; do Carmo, Janaina Braga

2018-01-15

Sugarcane is a widespread bioenergy crop in tropical regions, and the growing global demand for renewable energy in recent years has led to a dramatic expansion and intensification of sugarcane agriculture in Brazil. Currently, extensive areas of low-intensity pasture are being converted to sugarcane, while management in the remaining pasture is becoming more intensive, i.e., includes tilling and fertilizer use. In this study, we assessed how such changes in land use and management practices alter emissions of greenhouse gases (GHG) such as CO 2 , N 2 O and CH 4 by measuring in situ fluxes for one year after conversion from low-intensity pasture to conventional sugarcane agriculture and management-intensive pasture. Results show that CO 2 and N 2 O fluxes increased significantly in pasture and sugarcane with tillage, fertilizer use, or both combined. Emissions were highly variable for all GHGs, yet, cumulatively, it was clear that annual emissions in CO 2 -equivalent (CO 2 -eq) were higher in management-intense pasture and sugarcane than in unmanaged pasture. Surprisingly, tilled pasture with fertilizer (management-intensive pasture) resulted in higher CO 2 -eq emissions than conventional sugarcane. We concluded that intensification of pasture management and the conversion of pasture to sugarcane can increase the emission factor (EF) estimated for sugarcane produced in Brazil. The role of management practices and environmental conditions and the potential for reducing emissions are discussed. Copyright © 2017 Elsevier Ltd. All rights reserved.

Expansion of Sugarcane area for Ethanol production in Brazil: a Threat to Food Production and Environmental Sustainability?

Science.gov (United States)

Monteiro, J. M.; Coutinho, H. L.; Veiga, L. B.

2012-12-01

The raise in fossil fuels prices and the increase in Greenhouse Gas emissions is leading nations to adopt non-fossil fuels based energy sources. Sugarcane crops for biofuel production are expanding fast in Brazil, mainly through land use change (LUC) processes, in substitution of pasturelands and grain crops plantations. Would these changes affect negatively sustainability assessments of bioethanol production in the future? We estimate the extent of sugarcane cropland needed to produce sufficient ethanol to attend to market demands. This work presents a baseline scenario for sugarcane cropping area in Brazil in 2017, taking into account market forces (supply and demand). We also comment on a policy instrument targetting sustainable sugarcane production in Brazil. The expansion scenarios took into account the demand for ethanol from 2008-2017, produced by the Energy Research Corporation, of Brazil. In order to develop the expansion scenario, we estimated the amount of sugarcane needed to attend the ethanol demand. We then calculated the area needed to generate that amount of sugarcane. The analytical parameters were: 1) one tonne of sugarcane produces an average 81.6 liters of ethanol; 2) the average sugarcane crop productivity varied linearly from 81.4 tons/hectare in 2008 to 86.2 tons/hectare in 2017. We also assumed that sugarcane productivity in 2017 as the current average productivity of sugarcane in the State of São Paulo. The results show that the requirement for 3.5 million ha in 2007 will increase to 9 million ha in 2017. The Sugarcane Agroecologic Zoning (ZAECANA), published by Embrapa (2009), is a tool that not only informs the territory occupation and use policies, but also classifies land as qualified, restricted or non-qualified for the plantation of sugarcane crops. The ZAECANA is based on soil and climate suitability assessments, and is presented in a spatially-explicit format. Adopting the precautionary principle, a national policy was established

Growth, cane yield and sugar content of six genotypes of sugarcane ...

African Journals Online (AJOL)

The growth and yield of six sugarcane genotypes were studied in field plots between 1999 and 2001, at Umudike, in the humid forest zone of southeastern Nigeria. Treatments comprised five improved sugarcane genotypes (NCS 001, NCS 003, NCS 004, NCS 005 and C062175) and one local variety (Umudike Local) ...

DEVELOPMENT OF A METADATA MANAGEMENT SYSTEM FOR AN INTERDISCIPLINARY RESEARCH PROJECT

Directory of Open Access Journals (Sweden)

C. Curdt

2012-07-01

Full Text Available In every interdisciplinary, long-term research project it is essential to manage and archive all heterogeneous research data, produced by the project participants during the project funding. This has to include sustainable storage, description with metadata, easy and secure provision, back up, and visualisation of all data. To ensure the accurate description of all project data with corresponding metadata, the design and implementation of a metadata management system is a significant duty. Thus, the sustainable use and search of all research results during and after the end of the project is particularly dependent on the implementation of a metadata management system. Therefore, this paper will describe the practical experiences gained during the development of a scientific research data management system (called the TR32DB including the corresponding metadata management system for the multidisciplinary research project Transregional Collaborative Research Centre 32 (CRC/TR32 'Patterns in Soil-Vegetation-Atmosphere Systems'. The entire system was developed according to the requirements of the funding agency, the user and project requirements, as well as according to recent standards and principles. The TR32DB is basically a combination of data storage, database, and web-interface. The metadata management system was designed, realized, and implemented to describe and access all project data via accurate metadata. Since the quantity and sort of descriptive metadata depends on the kind of data, a user-friendly multi-level approach was chosen to cover these requirements. Thus, the self-developed CRC/TR32 metadata framework is designed. It is a combination of general, CRC/TR32 specific, as well as data type specific properties.

Metadata Exporter for Scientific Photography Management

Science.gov (United States)

Staudigel, D.; English, B.; Delaney, R.; Staudigel, H.; Koppers, A.; Hart, S.

2005-12-01

Photographs have become an increasingly important medium, especially with the advent of digital cameras. It has become inexpensive to take photographs and quickly post them on a website. However informative photos may be, they still need to be displayed in a convenient way, and be cataloged in such a manner that makes them easily locatable. Managing the great number of photographs that digital cameras allow and creating a format for efficient dissemination of the information related to the photos is a tedious task. Products such as Apple's iPhoto have greatly eased the task of managing photographs, However, they often have limitations. Un-customizable metadata fields and poor metadata extraction tools limit their scientific usefulness. A solution to this persistent problem is a customizable metadata exporter. On the ALIA expedition, we successfully managed the thousands of digital photos we took. We did this with iPhoto and a version of the exporter that is now available to the public under the name "CustomHTMLExport" (http://www.versiontracker.com/dyn/moreinfo/macosx/27777), currently undergoing formal beta testing This software allows the use of customized metadata fields (including description, time, date, GPS data, etc.), which is exported along with the photo. It can also produce webpages with this data straight from iPhoto, in a much more flexible way than is already allowed. With this tool it becomes very easy to manage and distribute scientific photos.

NDVI to Detect Sugarcane Aphid Injury to Grain Sorghum.

Science.gov (United States)

Elliott, N C; Backoulou, G F; Brewer, M J; Giles, K L

2015-06-01

Multispectral remote sensing has potential to provide quick and inexpensive information on sugarcane aphid, Melanaphis sacchari (Zehntner), pest status in sorghum fields. We describe a study conducted to determine if injury caused by sugarcane aphid to sorghum plants in fields of grain sorghum could be detected using multispectral remote sensing from a fixed wing aircraft. A study was conducted in commercial grain sorghum fields in the Texas Gulf Coast region in June 2014. Twenty-six commercial grain sorghum fields were selected and rated for the level of injury to sorghum plants in the field caused by sugarcane aphid. Plant growth stage ranged from 5.0 (watery ripe) to 7.0 (hard dough) among fields; and plant injury rating from sugarcane aphid ranged from 1.0 (little or no injury) to 4.0 (>40% of plants displaying injury) among fields. The normalized differenced vegetation index (NDVI) is calculated from light reflectance in the red and near-infrared wavelength bands in multispectral imagery and is a common index of plant stress. High NDVI indicates low levels of stress and low NDVI indicates high stress. NDVI ranged from -0.07 to 0.26 among fields. The correlation between NDVI and plant injury rating was negative and significant, as was the correlation between NDVI and plant growth stage. The negative correlation of NDVI with injury rating indicated that plant stress increased with increasing plant injury. Reduced NDVI with increasing plant growth probably resulted from reduced photosynthetic activity in more mature plants. The correlation between plant injury rating and plant growth stage was positive and significant indicating that plant injury from sugarcane aphid increased as plants matured. The partial correlation of NDVI with plant injury rating was negative and significant indicating that NDVI decreased with increasing plant injury after adjusting for its association with plant growth stage. We demonstrated that remotely sensed imagery acquired from grain

Assessment of Sugarcane Germplasm ( Saccharum spp. complex Against Red Rot Pathogen Colletotrichum Falcatum

Directory of Open Access Journals (Sweden)

Atul Singh

2017-08-01

Full Text Available ABSTRACT Red rot, caused by Colletotrichum falcatum Went is the most important disease of sugarcane in India inflicting substantial loss to both cane industry and cane growers. To keep in view the importance of red rot disease of sugarcane, 117 accession of sugarcane germplasm including different Saccharum species and Indian and foreign commercial hybrids were tested against red rot with Cf 07, Cf 08 & Cf 09 (national pathotypes by plug method of inoculation. Out of 117, 6 were found resistant and 12 were moderately resistant against red rot and rest were moderately susceptible/susceptible/highly susceptible. Theses resistance and moderately resistant accession can be further utilize to produce resistance varieties against the most devastating pathogen of sugarcane.

Potential of Sugarcane in Modern Energy Development in Southern Africa

Energy Technology Data Exchange (ETDEWEB)

Souza, Simone P., E-mail: sp.souza@yahoo.com.br; Horta Nogueira, Luiz A. [Interdisciplinary Center for Energy Planning, University of Campinas (UNICAMP), Campinas, SP (Brazil); Watson, Helen K. [School of Agricultural, Earth and Environmental Sciences, University of KwaZulu-Natal, Durban, KZN (South Africa); Lynd, Lee Rybeck [Dartmouth College, Thayer School of Engineering, Dartmouth, NH (United States); Elmissiry, Mosad [New Partnership for Africa’s Development (NEPAD), Johannesburg, GT (South Africa); Cortez, Luís A. B. [Faculty of Agricultural Engineering, University of Campinas (UNICAMP), Campinas, SP (Brazil)

2016-12-26

For more than half of the Southern African population, human development is limited by a lack of access to electricity and modern energy for cooking. Modern bioenergy merits consideration as one means to address this situation in areas where sufficient arable land is available. While numerous studies have concluded that Africa has significant biomass potential, they do not indicate by how much it can effectively reduce the use of traditional biomass and provide more accessible energy, especially at a country level. Here, we evaluate the potential of sugarcane to replace traditional biomass and fossil fuel and enlarge the access to electricity in Southern Africa. By using its current molasses for ethanol production, Swaziland could increase electricity generation by 40% using bagasse and replace 60% of cooking fuel or 30% of liquid fossil fuel. Sugarcane expansion over 1% of the pasture land in Angola, Mozambique, and Zambia could replace greater than 70% of cooking fuel. Bioelectricity generation from modest sugarcane expansion could be increased by 10% in Malawi, Mozambique, and Zambia and by 20% in Angola. Our results support the potential of sugarcane as a modern energy alternative for Southern Africa.

Potential of Sugarcane in Modern Energy Development in Southern Africa

International Nuclear Information System (INIS)

Souza, Simone P.; Horta Nogueira, Luiz A.; Watson, Helen K.; Lynd, Lee Rybeck; Elmissiry, Mosad; Cortez, Luís A. B.

2016-01-01

For more than half of the Southern African population, human development is limited by a lack of access to electricity and modern energy for cooking. Modern bioenergy merits consideration as one means to address this situation in areas where sufficient arable land is available. While numerous studies have concluded that Africa has significant biomass potential, they do not indicate by how much it can effectively reduce the use of traditional biomass and provide more accessible energy, especially at a country level. Here, we evaluate the potential of sugarcane to replace traditional biomass and fossil fuel and enlarge the access to electricity in Southern Africa. By using its current molasses for ethanol production, Swaziland could increase electricity generation by 40% using bagasse and replace 60% of cooking fuel or 30% of liquid fossil fuel. Sugarcane expansion over 1% of the pasture land in Angola, Mozambique, and Zambia could replace greater than 70% of cooking fuel. Bioelectricity generation from modest sugarcane expansion could be increased by 10% in Malawi, Mozambique, and Zambia and by 20% in Angola. Our results support the potential of sugarcane as a modern energy alternative for Southern Africa.

Phenotype adaptability and stability of sugarcane genotypes in the sugarcane belt of the state of Pernambuco, Brazil.

Science.gov (United States)

Dutra Filho, J A; Junior, T C; Simões Neto, D E

2014-08-29

We assessed the agroindustrial performance of 25 sugarcane genotypes adapted to the edaphoclimatic conditions of the State of Pernambuco, Brazil, within the microregions Mata Norte, Mata Sul, Região Central, Litoral Norte, and Litoral Sul. The variables analyzed were POL tonnage per hectare, sugarcane tonnage per hectare, fiber and total recoverable sugar tonnage per hectare, using a randomized block design with four repetitions. Combined variance of experiments, genetic parameter estimates, decomposition of the genotype-environment interaction, and environment stratification were analyzed. Phenotype adaptability and stability were also analyzed. The various genotypes presented great potential for improvement and a similar response pattern to the microregions Centro and Mata Sul of the state of Pernambuco. Genotypes RB863129, RB867515, RB92579, RB953180, SP81-3250, RB75126, and RB942520 were better in productivity and phenotype adaptability and stability compared to genotypes RB892700, RB943365, SP79-1011, Q138, RB943538, SP78-4764, RB953281, RB943066, RB928064, RB93509, RB72454, RB952675, RB952991, RB943161, RB942898, RB872552, RB952900, and RB942849. These genotypes are recommended as cultivation options in the sugarcane belt in the state of Pernambuco, since they stand out in terms of phenotype adaptability and stability as evaluated using the method by Annicchiarico, Lin and Bins, and the method by Eberhart and Russel.

Pre-Harvest Sugarcane Burning: Determination of Emission Factors through Laboratory Measurements

Directory of Open Access Journals (Sweden)

João Andrade Carvalho

2012-02-01

Full Text Available Sugarcane is an important crop for the Brazilian economy and roughly 50% of its production is used to produce ethanol. However, the common practice of pre-harvest burning of sugarcane straw emits particulate material, greenhouse gases, and tropospheric ozone precursors to the atmosphere. Even with policies to eliminate the practice of pre-harvest sugarcane burning in the near future, there is still significant environmental damage. Thus, the generation of reliable inventories of emissions due to this activity is crucial in order to assess their environmental impact. Nevertheless, the official Brazilian emissions inventory does not presently include the contribution from pre-harvest sugarcane burning. In this context, this work aims to determine sugarcane straw burning emission factors for some trace gases and particulate material smaller than 2.5 μm in the laboratory. Excess mixing ratios for CO2, CO, NOX, UHC (unburned hydrocarbons, and PM2.5 were measured, allowing the estimation of their respective emission factors. Average estimated values for emission factors (g kg−1 of burned dry biomass were 1,303 ± 218 for CO2, 65 ± 14 for CO, 1.5 ± 0.4 for NOX, 16 ± 6 for UHC, and 2.6 ± 1.6 for PM2.5. These emission factors can be used to generate more realistic emission inventories and therefore improve the results of air quality models.

Phytochemical profile of sugarcane and its potential health aspects

OpenAIRE

Singh, Amandeep; Lal, Uma Ranjan; Mukhtar, Hayat Muhammad; Singh, Prabh Simran; Shah, Gagan; Dhawan, Ravi Kumar

2015-01-01

Sugarcane (Saccharum officinarum Linn.) is an important perennial grass of Poaceae family, indigenous to tropical South Asia and Southeast Asia. It is cultivated worldwide due to the economical and medicinal value of its high yielding products. Sugarcane juice is well known as a raw material for the production of refined sugar and its wax is considered as a potential substitute for the expensive carnauba wax, which is of cosmetic and pharmaceutical interest. Refined sugar is the primary produ...

Languages for Metadata

NARCIS (Netherlands)

Brussee, R.; Veenstra, M.; Blanken, Henk; de Vries, A.P.; Blok, H.E.; Feng, L.

2007-01-01

The term meta origins from the Greek word µ∈τα, meaning after. The word Metaphysics is the title of Aristotle’s book coming after his book on nature called Physics. This has given meta the modern connotation of a nature of a higher order or of a more fundamental kind [1]. Literally, metadata is

An Assessment of the Evolving Common Metadata Repository Standards for Airborne Field Campaigns

Science.gov (United States)

Northup, E. A.; Chen, G.; Early, A. B.; Beach, A. L., III; Walter, J.; Conover, H.

2016-12-01

The NASA Earth Venture Program has led to a dramatic increase in airborne observations, requiring updated data management practices with clearly defined data standards and protocols for metadata. While the current data management practices demonstrate some success in serving airborne science team data user needs, existing metadata models and standards such as NASA's Unified Metadata Model (UMM) for Collections (UMM-C) present challenges with respect to accommodating certain features of airborne science metadata. UMM is the model implemented in the Common Metadata Repository (CMR), which catalogs all metadata records for NASA's Earth Observing System Data and Information System (EOSDIS). One example of these challenges is with representation of spatial and temporal metadata. In addition, many airborne missions target a particular geophysical event, such as a developing hurricane. In such cases, metadata about the event is also important for understanding the data. While coverage of satellite missions is highly predictable based on orbit characteristics, airborne missions feature complicated flight patterns where measurements can be spatially and temporally discontinuous. Therefore, existing metadata models will need to be expanded for airborne measurements and sampling strategies. An Airborne Metadata Working Group was established under the auspices of NASA's Earth Science Data Systems Working Group (ESDSWG) to identify specific features of airborne metadata that can not be currently represented in the UMM and to develop new recommendations. The group includes representation from airborne data users and providers. This presentation will discuss the challenges and recommendations in an effort to demonstrate how airborne metadata curation/management can be improved to streamline data ingest and discoverability to a broader user community.

Experimental assessment of the accuracy of genomic selection in sugarcane.

Science.gov (United States)

Gouy, M; Rousselle, Y; Bastianelli, D; Lecomte, P; Bonnal, L; Roques, D; Efile, J-C; Rocher, S; Daugrois, J; Toubi, L; Nabeneza, S; Hervouet, C; Telismart, H; Denis, M; Thong-Chane, A; Glaszmann, J C; Hoarau, J-Y; Nibouche, S; Costet, L

2013-10-01

Sugarcane cultivars are interspecific hybrids with an aneuploid, highly heterozygous polyploid genome. The complexity of the sugarcane genome is the main obstacle to the use of marker-assisted selection in sugarcane breeding. Given the promising results of recent studies of plant genomic selection, we explored the feasibility of genomic selection in this complex polyploid crop. Genetic values were predicted in two independent panels, each composed of 167 accessions representing sugarcane genetic diversity worldwide. Accessions were genotyped with 1,499 DArT markers. One panel was phenotyped in Reunion Island and the other in Guadeloupe. Ten traits concerning sugar and bagasse contents, digestibility and composition of the bagasse, plant morphology, and disease resistance were used. We used four statistical predictive models: bayesian LASSO, ridge regression, reproducing kernel Hilbert space, and partial least square regression. The accuracy of the predictions was assessed through the correlation between observed and predicted genetic values by cross validation within each panel and between the two panels. We observed equivalent accuracy among the four predictive models for a given trait, and marked differences were observed among traits. Depending on the trait concerned, within-panel cross validation yielded median correlations ranging from 0.29 to 0.62 in the Reunion Island panel and from 0.11 to 0.5 in the Guadeloupe panel. Cross validation between panels yielded correlations ranging from 0.13 for smut resistance to 0.55 for brix. This level of correlations is promising for future implementations. Our results provide the first validation of genomic selection in sugarcane.

Informative genomic microsatellite markers for efficient genotyping applications in sugarcane.

Science.gov (United States)

Parida, Swarup K; Kalia, Sanjay K; Kaul, Sunita; Dalal, Vivek; Hemaprabha, G; Selvi, Athiappan; Pandit, Awadhesh; Singh, Archana; Gaikwad, Kishor; Sharma, Tilak R; Srivastava, Prem Shankar; Singh, Nagendra K; Mohapatra, Trilochan

2009-01-01

Genomic microsatellite markers are capable of revealing high degree of polymorphism. Sugarcane (Saccharum sp.), having a complex polyploid genome requires more number of such informative markers for various applications in genetics and breeding. With the objective of generating a large set of microsatellite markers designated as Sugarcane Enriched Genomic MicroSatellite (SEGMS), 6,318 clones from genomic libraries of two hybrid sugarcane cultivars enriched with 18 different microsatellite repeat-motifs were sequenced to generate 4.16 Mb high-quality sequences. Microsatellites were identified in 1,261 of the 5,742 non-redundant clones that accounted for 22% enrichment of the libraries. Retro-transposon association was observed for 23.1% of the identified microsatellites. The utility of the microsatellite containing genomic sequences were demonstrated by higher primer designing potential (90%) and PCR amplification efficiency (87.4%). A total of 1,315 markers including 567 class I microsatellite markers were designed and placed in the public domain for unrestricted use. The level of polymorphism detected by these markers among sugarcane species, genera, and varieties was 88.6%, while cross-transferability rate was 93.2% within Saccharum complex and 25% to cereals. Cloning and sequencing of size variant amplicons revealed that the variation in the number of repeat-units was the main source of SEGMS fragment length polymorphism. High level of polymorphism and wide range of genetic diversity (0.16-0.82 with an average of 0.44) assayed with the SEGMS markers suggested their usefulness in various genotyping applications in sugarcane.

Metadata capture in an electronic notebook: How to make it as simple as possible?

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Menzel, Julia

2015-09-01

Full Text Available In the last few years electronic laboratory notebooks (ELNs have become popular. ELNs offer the great possibility to capture metadata automatically. Due to the high documentation effort metadata documentation is neglected in science. To close the gap between good data documentation and high documentation effort for the scientists a first user-friendly solution to capture metadata in an easy way was developed.At first, different protocols for the Western Blot were collected within the Collaborative Research Center 1002 and analyzed. Together with existing metadata standards identified in a literature search a first version of the metadata scheme was developed. Secondly, the metadata scheme was customized for future users including the implementation of default values for automated metadata documentation.Twelve protocols for the Western Blot were used to construct one standard protocol with ten different experimental steps. Three already existing metadata standards were used as models to construct the first version of the metadata scheme consisting of 133 data fields in ten experimental steps. Through a revision with future users the final metadata scheme was shortened to 90 items in three experimental steps. Using individualized default values 51.1% of the metadata can be captured with present values in the ELN.This lowers the data documentation effort. At the same time, researcher could benefit by providing standardized metadata for data sharing and re-use.

Brazilian organic sugarcane spirits: Physicochemical and chromatographic profile

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Felipe Cimino Duarte

Full Text Available ABSTRACT There has been a growing demand for products from organic agriculture for the food market. Brazil leads the production of sugarcane spirits and produces about 1.6 billion liters/year. New technologies have been sought throughout the supply chain to improve production, and organic raw material has been used in the production of sugar cane for the production of beverages. This study aimed to define the physicochemical and chromatographic profiles of eleven organic sugarcane spirits samples from various Brazilian states. The secondary components and contaminants were identified and quantified through physicochemical analyses, HPLC and gas chromatography (GC. A significant percentage of the organic sugarcane spirits samples contained concentrations of components that were above the limits required by the Ministry of Agriculture, Livestock and Provisioning (MAPA, specifically the esters (18.20%, copper and dry extract (9.10%. This contamination is caused by bad conditions employed during the production process, which are not in compliance with the good manufacturing practices determined and legislated by Brazilian law.

Sugarcane Initial Growth with Vinasse Application in Latosol under Gradual Aluminum Stress

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Marques Viglio, Larissa; Leal Varanda, Leticia; Soares, Marcio Roberto; Casagrande, José Carlos

2015-04-01

One of the strategies for overcoming the high acidity of soils and the consequent toxicity of aluminum (Al) is based on the use of varieties adapted to these conditions. In Brazil, the application of vinasse is routine practice in the cultivation of sugarcane due to its fertilizing effect, mainly because of high potassium content. However, the vinasse may also attenuate the toxic effects of Al in the soil by forming complexes with low molecular weight organic acids providing greater depth of the root of sugarcane. The aim of this work was to evaluate the effect of vinasse on the initial growth of three cultivars of sugarcane (RB855453, RB966928 and RB867515), as well as its influence on root depth in a Dystrophic Red-Yellow Latosol (Typic Hapludox) with gradient of saturation by Al. The experiment was conducted in a greenhouse, in totally randomized design with factorial arrangement and three replications. Seedlings of sugarcane were transplanted to PVC columns 0.8 m high, built by stacking four rings (0.2 m high), filled with soil samples, which offered an increasing gradient of saturation by Al (m%) at depth (0-0.2 m (m% = 0,7); 0.2-0.4 m (m% = 7,9); 0.4-0.6 m (m %= 40.8); 0.6-0.8 m (m%= 62.6)). The collection of the experiment was conducted 120 days after planting, with the determination of the stalk diameter (DC), plant height (ALT), leaf nutrient content, dry matter of the aerial part (MSPA) and dry matter of the root system (MSSR). Cultivars of sugarcane and the application of vinasse had effect on DC and the MSSR. Cultivar RB867515 showed higher DC than in other cultivars, with 20.8 mm. The increase of MSSR by sugarcane cultivars varied due to depth. There were no effects of sugarcane cultivars and vinasse application in MSPA. The vinasse application resulted in plants with higher ALT. With the exception of the foliar content of Fe, the N, Ca, Mg, S and Mn content were below those considered appropriate for sugarcane. Unlike other cultivars, the application

Biosynthesis of secondary metabolites in sugarcane

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S.C. França

2001-12-01

Full Text Available A set of genes related to secondary metabolism was extracted from the sugarcane expressed sequence tag (SUCEST database and was used to investigate both the gene expression pattern of key enzymes regulating the main biosynthetic secondary metabolism pathways and the major classes of metabolites involved in the response of sugarcane to environmental and developmental cues. The SUCEST database was constructed with tissues in different physiological conditions which had been collected under varied situation of environmental stress. This database allows researchers to identify and characterize the expressed genes of a wide range of putative enzymes able to catalyze steps in the phenylpropanoid, isoprenoid and other pathways of the special metabolic mechanisms involved in the response of sugarcane to environmental changes. Our results show that sugarcane cDNAs encoded putative ultra-violet induced sesquiterpene cyclases (SC; chalcone synthase (CHS, the first enzyme in the pathway branch for flavonoid biosynthesis; isoflavone synthase (IFS, involved in plant defense and root nodulation; isoflavone reductase (IFR, a key enzyme in phenylpropanoid phytoalexin biosynthesis; and caffeic acid-O-methyltransferase, a key enzyme in the biosynthesis of lignin cell wall precursors. High levels of CHS transcripts from plantlets infected with Herbaspirillum rubri or Gluconacetobacter diazotroficans suggests that agents of biotic stress can elicit flavonoid biosynthesis in sugarcane. From this data we have predicted the profile of isoprenoid and phenylpropanoid metabolism in sugarcane and pointed the branches of secondary metabolism activated during tissue-specific stages of development and the adaptive response of sugarcane to agents of biotic and abiotic stress, although our assignment of enzyme function should be confirmed by careful biochemical and genetic supporting evidence.Este trabalho foi realizado com os objetivos de gerar uma coleção de genes

Trimming and clustering sugarcane ESTs

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Guilherme P. Telles

2001-12-01

Full Text Available The original clustering procedure adopted in the Sugarcane Expressed Sequence Tag project (SUCEST had many problems, for instance too many clusters, the presence of ribosomal sequences, etc. We therefore redesigned the clustering procedure entirely, including a much more careful initial trimming of the reads. In this paper the new trimming and clustering strategies are described in detail and we give the new official figures for the project, 237,954 expressed sequence tags and 43,141 clusters.O método de clustering adotado no Projeto SUCEST (Sugarcane EST Project tinha vários problemas (muitos clusters, presença de seqüências de ribossomo etc. Nós assumimos a tarefa de reprojetar todo o processo de clustering, propondo uma "limpeza" inicial mais cuidadosa das seqüências. Neste artigo as estratégias de limpeza das seqüências e de clustering são descritas em detalhe, incluindo os números oficiais do projeto (237,954 ESTs e 43,141 clusters.

Remote Sensing Time Series to Evaluate Direct Land Use Change of Recent Expanded Sugarcane Crop in Brazil

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Marcio Pupin Mello

2012-04-01

Full Text Available The use of biofuels to mitigate global carbon emissions is highly dependent on direct and indirect land use changes (LUC. The direct LUC (dLUC can be accurately evaluated using remote sensing images. In this work we evaluated the dLUC of about 4 million hectares of sugarcane expanded from 2005 to 2010 in the South-central region of Brazil. This region has a favorable climate for rain-fed sugarcane, a great potential for agriculture expansion without deforestation, and is currently responsible for almost 90% of Brazilian’s sugarcane production. An available thematic map of sugarcane along with MODIS and Landast images, acquired from 2000 to 2009, were used to evaluate the land use prior to the conversion to sugarcane. A systematic sampling procedure was adopted and the land use identification prior to sugarcane, for each sample, was performed using a web tool developed to visualize both the MODIS time series and the multitemporal Landsat images. Considering 2000 as reference year, it was observed that sugarcane expanded: 69.7% on pasture land; 25.0% on annual crops; 0.6% on forest; while 3.4% was sugarcane land under crop rotation. The results clearly show that the dLUC of recent sugarcane expansion has occurred on more than 99% of either pasture or agriculture land.

Metadata Schema Used in OCLC Sampled Web Pages

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Fei Yu

2005-12-01

Full Text Available The tremendous growth of Web resources has made information organization and retrieval more and more difficult. As one approach to this problem, metadata schemas have been developed to characterize Web resources. However, many questions have been raised about the use of metadata schemas such as which metadata schemas have been used on the Web? How did they describe Web accessible information? What is the distribution of these metadata schemas among Web pages? Do certain schemas dominate the others? To address these issues, this study analyzed 16,383 Web pages with meta tags extracted from 200,000 OCLC sampled Web pages in 2000. It found that only 8.19% Web pages used meta tags; description tags, keyword tags, and Dublin Core tags were the only three schemas used in the Web pages. This article revealed the use of meta tags in terms of their function distribution, syntax characteristics, granularity of the Web pages, and the length distribution and word number distribution of both description and keywords tags.

Productivity of sugarcane plants of ratooning with fertilizing treatment

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MUHADIONO

2010-01-01

Full Text Available Latief AS, Syarief R, Pramudya B, Muhadiono. 2010. Productivity of sugarcane plants of ratooning with various fertilizing treatments. Nusantara Bioscience 2: 43-47. This research aims to determine the sugarcane plants of ratooning productivity with low external input of fertilization treatment towards farmers can increase profits. The method used is the Completely Randomized Block Design (CRBD with four treatments and three repetitions (4x3. Sugarcane varieties R 579 planted in each patch experiment 5x5 m2. Dosage of fertilizer: P0 = 3.6 kg/year plot experiment was 100% dosage usage of chemical fertilizers used by farmers. Further dosages were P1 (75% = 2.7 kg/plot, P2 (50% = 1.8 kg/plot and P3 (0.25% = 0.9 kg/plot, each supplemented with fertilizer 5 mL of liquid organic/patch a year. Sugarcane crops with a variety of treatment showed no significant difference. The highest productivity was achieved at dosages of P2 (50% chemical fertilizers plus organic fertilizer is 21.67 kg per square meter. Chemical fertilizers can be saved 7 quintals per hectare a year or Rp 997,500 per year. Additional costs of liquid organic fertilizer Rp. 100,000 per hectare year and labor Rp 100,000 per hectare, so the additional advantage of saving farmers fertilizer Rp. 797,500 per year.

Surplus electricity production in sugarcane mills using residual bagasse and straw as fuel

International Nuclear Information System (INIS)

Alves, Moises; Ponce, Gustavo H.S.F.; Silva, Maria Aparecida; Ensinas, Adriano V.

2015-01-01

The cogeneration system is one of the most important parts of sugarcane mills which use the bagasse as fuel. In the recent years, modern equipments and energy efficiency measures made possible to the sugarcane industry, the production of surplus electricity which become, besides the sugar and ethanol, a third product from the same renewable source, the sugarcane. This work analyses the surplus electric power systems for three different schemes of cogeneration system in the sugarcane industry through the simulator Thermoflow"®. The analysis is made considering both the available bagasse and sugarcane straw recovery as fuel in three different scenarios for the industrial process energy requirements. The results show that the CEST (Condensing Extraction Steam Turbine) system can have a surplus of electricity of up to four times higher than the BPST (Backpressure Steam Turbine) system. The system CEST can have an increase in surplus power above 23% and 102% for the rate of 10% and 50% of cane straw recovery in the field respectively. The BPST-C (Backpressure and Condensing Turbines) system can produce similar values of surplus electricity when compared with the system CEST, but may represent an opportunity of flexible operation of the cogeneration systems in harvest and off-seasons. - Highlights: • At least three cogeneration system options are available in sugarcane mills. • Nowadays, only steam-based cycle cogeneration systems are used in sugarcane mills. • BPST system is limited to 70 e kWh/t cane of surplus electricity production. • CEST system increases the surplus electricity up to four times than the BPST. • Operation during off-season of the BPST-C system is an advantage for this option.

Geospatial characteristics of Florida's coastal and offshore environments: Distribution of important habitats for coastal and offshore biological resources and offshore sand resources

Science.gov (United States)

Demopoulos, Amanda W.J.; Foster, Ann M.; Jones, Michal L.; Gualtieri, Daniel J.

2011-01-01

The Geospatial Characteristics GeoPDF of Florida's Coastal and Offshore Environments is a comprehensive collection of geospatial data describing the political boundaries and natural resources of Florida. This interactive map provides spatial information on bathymetry, sand resources, and locations of important habitats (for example, Essential Fish Habitats (EFH), nesting areas, strandings) for marine invertebrates, fish, reptiles, birds, and marine mammals. The map should be useful to coastal resource managers and others interested in marine habitats and submerged obstructions of Florida's coastal region. In particular, as oil and gas explorations continue to expand, the map can be used to explore information regarding sensitive areas and resources in the State of Florida. Users of this geospatial database will have access to synthesized information in a variety of scientific disciplines concerning Florida's coastal zone. This powerful tool provides a one-stop assembly of data that can be tailored to fit the needs of many natural resource managers. The map was originally developed to assist the Bureau of Ocean Energy Management, Regulation, and Enforcement (BOEMRE) and coastal resources managers with planning beach restoration projects. The BOEMRE uses a systematic approach in planning the development of submerged lands of the Continental Shelf seaward of Florida's territorial waters. Such development could affect the environment. BOEMRE is required to ascertain the existing physical, biological, and socioeconomic conditions of the submerged lands and estimate the impact of developing these lands. Data sources included the National Oceanic and Atmospheric Administration, BOEMRE, Florida Department of Environmental Protection, Florida Geographic Data Library, Florida Fish and Wildlife Conservation Commission, Florida Natural Areas Inventory, and the State of Florida, Bureau of Archeological Research. Federal Geographic Data Committee (FGDC) compliant metadata are

Describing Geospatial Assets in the Web of Data: A Metadata Management Scenario

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Cristiano Fugazza

2016-12-01

Full Text Available Metadata management is an essential enabling factor for geospatial assets because discovery, retrieval, and actual usage of the latter are tightly bound to the quality of these descriptions. Unfortunately, the multi-faceted landscape of metadata formats, requirements, and conventions makes it difficult to identify editing tools that can be easily tailored to the specificities of a given project, workgroup, and Community of Practice. Our solution is a template-driven metadata editing tool that can be customised to any XML-based schema. Its output is constituted by standards-compliant metadata records that also have a semantics-aware counterpart eliciting novel exploitation techniques. Moreover, external data sources can easily be plugged in to provide autocompletion functionalities on the basis of the data structures made available on the Web of Data. Beside presenting the essentials on customisation of the editor by means of two use cases, we extend the methodology to the whole life cycle of geospatial metadata. We demonstrate the novel capabilities enabled by RDF-based metadata representation with respect to traditional metadata management in the geospatial domain.

CHANGES OF SUCROSE CONTENT AND INVERTASE ACTIVITY DURING SUGARCANE STEM STORAGE

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Tri Agus Siswoyo

2016-10-01

Full Text Available Invertases (beta-D-fructofuranosidase, E.C. 3.2.1.26 are the key enzymes involved in sucrose metabolism in sugarcane plants. They are highly correlated with sucrose and reducing sugar contents during plant growth. The sugarcane plants have two kinds of invertases, namely neutral invertase (NI and acid invertase (AI. They have different function in sucrose accumulation. The research aimed to study the role of AI and NI in accumulation of reducing sugar during storage of sugarcane stems. Plant materials of 18-month-old field grown sugarcane of the commercial variety R-579 (wet-land and M 442-51 (dry-land were used. Three internodes were sampled to represent immature (internode 1-8/F1, maturing (internode 9-16/F2, and mature (internode 17-24/F3 stem tissues. All tissues were stored for 0-9 days at room temperature (28-32oC and each day, the samplewas extracted to determine invertase activity, total soluble protein, and sugar contents. This observation was valid for invertase activity expressed on a protein basis. At the initiateharvested (0-3 days, NI had a higher specific activity than AI in the sucrose-accumulating region of the sugarcane stems. Negative significant correlation was found between NI specific activity and sucrose accumulation (r2 = 0.41, P < 0.05. AI showed a higher specific activity after 4 days harvested and had negative correlation with sucrose accumulation (r2 = 0.40, P < 0.05. These results showed that NI could be more  responsible in sucrose hydrolisis than AI at early storage of sugarcane stems.

Genotype-specific microsatellite (SSR) markers for the sugarcane germplasm in the Karst region of Guizhou, China

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It is the first report on SSR-based molecular evaluation of genetic variability among sugarcane genotypes from the Karst region of China that provides useful information for local sugarcane improvement. Eighteen sugarcane genotypes including 13 active cultivars and five elite QT-series clones bred l...

Effects of phosphate limestone on structure and quality under sugarcane vertisoles

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Pedro Cairo Cairo

2017-10-01

Full Text Available The work was developed in sugarcane areas of cuban vertisols of the north coast of the province of Villa Clara municipality of Sagua la Grande, with the aim of evaluating the effectiveness of phosphate limestone and their combinations with fertilizers and organic manure on the structure and quality of vertisols under sugarcane cultivation. An experiment with phosphate limestone levels and combinations with organic manure (compost, filter cake and fertilizers (NPK was carried out on a wasstrip-block design. A soil analysis was performedat the depth of 0-20 and 20 -40 cm 36 months after the application of treatments. Organic matter, stable aggregates, factor structure, permeability, T value, exchangeable cations, index soil quality and productivity of sugarcane were evaluated. Phosphate limestone and there combinations with organic manures manifested significant effects on soil structure both in the surface layer and subsurface with residual impact over time to 36 months. The results show the close relationship between phosphate limestone and there combinations with organic manures on soil quality index additive, yield of sugarcane and economic impact.

A mixed model QTL analysis for sugarcane multiple-harvest-location trial data

NARCIS (Netherlands)

Pastina, M.M.; Malosetti, M.; Gazaffi, R.; Mollinari, M.; Margarido, G.R.A.; Oliveira, K.M.; Pinto, L.R.; Souza, A.P.; Eeuwijk, van F.A.; Garcia, A.A.F.

2012-01-01

Sugarcane-breeding programs take at least 12 years to develop new commercial cultivars. Molecular markers offer a possibility to study the genetic architecture of quantitative traits in sugarcane, and they may be used in marker-assisted selection to speed up artificial selection. Although the

Epicoccum nigrum P16, a Sugarcane Endophyte, Produces Antifungal Compounds and Induces Root Growth

Science.gov (United States)

Fávaro, Léia Cecilia de Lima; Sebastianes, Fernanda Luiza de Souza; Araújo, Welington Luiz

2012-01-01

Background Sugarcane is one of the most important crops in Brazil, mainly because of its use in biofuel production. Recent studies have sought to determine the role of sugarcane endophytic microbial diversity in microorganism-plant interactions, and their biotechnological potential. Epicoccum nigrum is an important sugarcane endophytic fungus that has been associated with the biological control of phytopathogens, and the production of secondary metabolites. In spite of several studies carried out to define the better conditions to use E. nigrum in different crops, little is known about the establishment of an endophytic interaction, and its potential effects on plant physiology. Methodology/Principal Findings We report an approach based on inoculation followed by re-isolation, molecular monitoring, microscopic analysis, plant growth responses to fungal colonization, and antimicrobial activity tests to study the basic aspects of the E. nigrum endophytic interaction with sugarcane, and the effects of colonization on plant physiology. The results indicate that E. nigrum was capable of increasing the root system biomass and producing compounds that inhibit the in vitro growth of sugarcane pathogens Fusarium verticillioides, Colletotrichum falcatum, Ceratocystis paradoxa, and Xanthomomas albilineans. In addition, E. nigrum preferentially colonizes the sugarcane surface and, occasionally, the endophytic environment. Conclusions/Significance Our work demonstrates that E. nigrum has great potential for sugarcane crop application because it is capable of increasing the root system biomass and controlling pathogens. The study of the basic aspects of the interaction of E. nigrum with sugarcane demonstrated the facultative endophytism of E. nigrum and its preference for the phylloplane environment, which should be considered in future studies of biocontrol using this species. In addition, this work contributes to the knowledge of the interaction of this ubiquitous endophyte

Nitrous oxide emissions from sugarcane straw left on the soil surface in Brazil

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Galdos, M. V.; Cerri, C. E.; Carvalho, J. L.; Cerri, C. C.

2012-12-01

In Brazil, the largest exporter of ethanol from sugarcane in the world, burning the dry leaves and tops in order to facilitate the harvest and transportation of the stalks is still a common practice. Burning plant residues causes emissions of greenhouse gases (GHGs) such as CO2, CH4 and N2O, besides the release of charcoal particles into the atmosphere. Due to a combination of pressure from changes in the public opinion and economical reasons, in Brazil sugarcane harvest is changing from a burned into an unburned system. Since manual harvest of sugarcane without burning is not economically feasible, mechanical harvesters have been developed that can take the stalk and leave the residues on the field, forming a mulch, in a system called green cane management. It is expected that 80% of the cane harvested in the main producing regions in Brazil will be harvested without burning by 2014. The conversion from burning sugarcane to green management of sugarcane will have impacts on the biogeochemical cycling of carbon and nitrogen in the plant soil system. The green cane management results in the deposition of large amounts of plant litter on the soil surface after harvest, ranging from 10 to 20 tons per hectare, which impact the whole production process of sugarcane, influencing yields, fertilizer management and application, soil erosion, soil organic matter dynamics as well as greenhouse gas emissions (CO2, N2O, CH4). From a GHG perspective, the conservation of sugarcane residues prevents emissions from the burning process, may promote carbon sequestration in soils and releases nitrogen during the decomposition process replacing the need for, and GHG emissions from, fossil fuel based nitrogen fertilizer sources. Measurements of soil C and N stocks and associated greenhouse gas emissions from the burned and unburned sugarcane systems and in the sugarcane expansion areas are still scarce. Therefore, the main objective of this work was to quantify the nitrous oxide

Estimation of herbicide bioconcentration in sugarcane (Saccharum officinarum L.

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Antonio Luiz Cerdeira

2015-04-01

Full Text Available Sugarcane is an important crop for sugar and biofuel production in Brazil. Growers depend greatly on herbicides to produce it. This experiment used herbicide physical-chemical and sugarcane plant physiological properties to simulate herbicide uptake and estimate the bioconcentration factor (BCF. The (BCF was calculated for the steady state chemical equilibrium between the plant herbicide concentration and soil solution. Plant-water partition coefficient (sugarcane bagasse-water partition coefficient, herbicide dilution rate, metabolism and dissipation in the soil-plant system, as well as total plant biomass factors were used. In addition, we added Tebuthiuron at rate of 5.0kg a.i. ha-1 to physically test the model. In conclusion, the model showed the following ranking of herbicide uptake: sulfentrazone > picloram >tebuthiuron > hexazinone > metribuzin > simazine > ametryn > diuron > clomazone > acetochlor. Furthermore, the highest BCF herbicides showed higher Groundwater Ubiquity Score (GUS index indicating high leaching potential. We did not find tebuthiuron in plants after three months of herbicide application

Towards Precise Metadata-set for Discovering 3D Geospatial Models in Geo-portals

Science.gov (United States)

Zamyadi, A.; Pouliot, J.; Bédard, Y.

2013-09-01

Accessing 3D geospatial models, eventually at no cost and for unrestricted use, is certainly an important issue as they become popular among participatory communities, consultants, and officials. Various geo-portals, mainly established for 2D resources, have tried to provide access to existing 3D resources such as digital elevation model, LIDAR or classic topographic data. Describing the content of data, metadata is a key component of data discovery in geo-portals. An inventory of seven online geo-portals and commercial catalogues shows that the metadata referring to 3D information is very different from one geo-portal to another as well as for similar 3D resources in the same geo-portal. The inventory considered 971 data resources affiliated with elevation. 51% of them were from three geo-portals running at Canadian federal and municipal levels whose metadata resources did not consider 3D model by any definition. Regarding the remaining 49% which refer to 3D models, different definition of terms and metadata were found, resulting in confusion and misinterpretation. The overall assessment of these geo-portals clearly shows that the provided metadata do not integrate specific and common information about 3D geospatial models. Accordingly, the main objective of this research is to improve 3D geospatial model discovery in geo-portals by adding a specific metadata-set. Based on the knowledge and current practices on 3D modeling, and 3D data acquisition and management, a set of metadata is proposed to increase its suitability for 3D geospatial models. This metadata-set enables the definition of genuine classes, fields, and code-lists for a 3D metadata profile. The main structure of the proposal contains 21 metadata classes. These classes are classified in three packages as General and Complementary on contextual and structural information, and Availability on the transition from storage to delivery format. The proposed metadata set is compared with Canadian Geospatial

Determining yield loss caused by brown rust in production fields of sugarcane

Science.gov (United States)

Infections of Puccinia melanocephala, the causal agent of brown rust, appear on Louisiana sugarcane in the spring. Disease expression is usually limited to 2 to 3 months until temperatures exceed those favorable for spore production. The affected sugarcane is harvested 4 to 6 months after rust sympt...

Building organic matter of long-term sugarcane soils in a temperate environment

Science.gov (United States)

Mineral soils with a history of sugarcane monoculture cropping contain less soil organic matter (-35%), and plant macro- and micronutrients, including N (-20%), K (-26%), S (-7%), Ca (-8%), B (-33%), Zn (-88%), Mn (-29%), and Cu (-26%), than adjacent non-cultivated soils. Harvesting sugarcane ‘green...

Reducing dissolved inorganic nitrogen in surface runoff water from sugarcane production systems.

Science.gov (United States)

Webster, A J; Bartley, R; Armour, J D; Brodie, J E; Thorburn, P J

2012-01-01

Nitrogen (N) lost from farms, especially as the highly bioavailable dissolved inorganic form, may be damaging Australia's Great Barrier Reef (GBR). As sugarcane is the dominant cropping system in GBR catchments, its N management practises are coming under increasing scrutiny. This study measured dissolved inorganic N lost in surface runoff water and sugarcane productivity over 3 years. The experiment compared the conventional fertiliser N application rate to sugarcane (average 180kg N/ha/year) and a rate based on replacing N exported in the previous crop (average 94kg N/ha/year). Dissolved inorganic N losses in surface water were 72%, 48% and 66% lower in the three monitored years in the reduced N fertiliser treatment. There was no significant difference in sugarcane yield between the two fertiliser N treatments, nor any treatment difference in soil mineral N - both of these results are indicators of the sustainability of the lower fertiliser N applications. Copyright © 2012 Elsevier Ltd. All rights reserved.

AMMI analysis to evaluate the adaptability and phenotypic stability of sugarcane genotypes

Directory of Open Access Journals (Sweden)

Luís Cláudio Inácio da Silveira

2013-02-01

Full Text Available Sugarcane (Saccharum sp. is one of the most important crops in Brazil. The high demand for sugarcane-derived products has stimulated the expansion of sugarcane cultivation in recent years, exploring different environments. The adaptability and the phenotypic stability of sugarcane genotypes in the Minas Gerais state, Brazil, were evaluated based on the additive main effects and multiplicative interaction (AMMI method. We evaluated 15 genotypes (13 clones and two checks: RB867515 and RB72454 in nine environments. The average of two cuttings for the variable tons of pol per hectare (TPH measure was used to discriminate genotypes. Besides the check RB867515 (20.44 t ha-1, the genotype RB987935 showed a high average TPH (20.71 t ha-1, general adaptability and phenotypic stability, and should be suitable for cultivation in the target region. The AMMI method allowed for easy visual identification of superior genotypes for each set of environments.

Physical and Mechanical Characterization of Sugarcane Bagasse Particleboards for Civil Construction

Directory of Open Access Journals (Sweden)

Rosane Battistelle

2016-12-01

Full Text Available In the worldwide market of particleboard production, the use of alternative raw materials is increasing, due to high demand and lack of traditional raw material, despite efforts of reforestation. In Brazil, the main agricultural commodity is sugarcane due to the copious production of sugar and ethanol. In the state of São Paulo alone approximately 140 million tons of sugarcane bagasse are produced every year, from which around 70% is burned for energy production, not adding value to the residue and generating pollution to the environment; and the other 30% is sold for composting. The objective of this work is to add value to the sugarcane bagasse by using it as a raw material for particleboard production to be employed as flooring in the area of civil construction. To achieve this, the present research characterized the physical and mechanical characteristics of the particleboards with the following alternative raw materials: sugarcane bagasse and leaves of bamboo. Particleboards were produced to reach high density (0.8g/cm3 using the resin (bi-component polyurethane castor oil. Tests for abrasion, roughness and resistance to denting and wear (Janka hardness verified that the addition of leaves of bamboo in the mixtures, contrary to what was expected, did not confer a greater degree of resistance to the particleboards. Lastly, the results showed that sugarcane bagasse is a viable raw material alternative for the production of particleboards, intended to be used as products and flooring.

Comparative performance of sugarcane bagasse and black polyethylene as mulch for squash (Cucurbita pepo L.) production

Science.gov (United States)

Louisiana processed 11.6 million mt of sugarcane in 2014, producing 1.36 million mt of raw sugar and an estimated 3.5 million mt of bagasse. Sugarcane bagasse is the fibrous material remaining after removing the sucrose, water, and other impurities (filter mud) from the millable sugarcane. Typically...

A document centric metadata registration tool constructing earth environmental data infrastructure

Science.gov (United States)

Ichino, M.; Kinutani, H.; Ono, M.; Shimizu, T.; Yoshikawa, M.; Masuda, K.; Fukuda, K.; Kawamoto, H.

2009-12-01

DIAS (Data Integration and Analysis System) is one of GEOSS activities in Japan. It is also a leading part of the GEOSS task with the same name defined in GEOSS Ten Year Implementation Plan. The main mission of DIAS is to construct data infrastructure that can effectively integrate earth environmental data such as observation data, numerical model outputs, and socio-economic data provided from the fields of climate, water cycle, ecosystem, ocean, biodiversity and agriculture. Some of DIAS's data products are available at the following web site of http://www.jamstec.go.jp/e/medid/dias. Most of earth environmental data commonly have spatial and temporal attributes such as the covering geographic scope or the created date. The metadata standards including these common attributes are published by the geographic information technical committee (TC211) in ISO (the International Organization for Standardization) as specifications of ISO 19115:2003 and 19139:2007. Accordingly, DIAS metadata is developed with basing on ISO/TC211 metadata standards. From the viewpoint of data users, metadata is useful not only for data retrieval and analysis but also for interoperability and information sharing among experts, beginners and nonprofessionals. On the other hand, from the viewpoint of data providers, two problems were pointed out after discussions. One is that data providers prefer to minimize another tasks and spending time for creating metadata. Another is that data providers want to manage and publish documents to explain their data sets more comprehensively. Because of solving these problems, we have been developing a document centric metadata registration tool. The features of our tool are that the generated documents are available instantly and there is no extra cost for data providers to generate metadata. Also, this tool is developed as a Web application. So, this tool does not demand any software for data providers if they have a web-browser. The interface of the tool

Lithium storage into carbonaceous materials obtained from sugarcane bagasse

International Nuclear Information System (INIS)

Matsubara, Elaine Y.; Lala, Stella M.; Rosolen, Jose Mauricio

2010-01-01

Carbonaceous materials with different structures are prepared by carbonization of sugarcane bagasse. Depending on carbonization conditions, it is possible to obtain soot rich in flakes or in honeycomb-shaped micrometric particles, whose concentration has large influence on lithium storage into electrodes. The soot rich in honeycomb-shaped particles provides the best electrochemical performance, with a reversible specific capacity of 310 mAh g -1 . The results suggest that the sugarcane bagasse can be potentially used in the design of anodic materials for lithium ion batteries. (author)

RNAseq Transcriptional Profiling following Whip Development in Sugarcane Smut Disease.

Directory of Open Access Journals (Sweden)

Patricia D C Schaker

Full Text Available Sugarcane smut disease is caused by the biotrophic fungus Sporisorium scitamineum. The disease is characterized by the development of a whip-like structure from the primary meristems, where billions of teliospores are produced. Sugarcane smut also causes tillering and low sucrose and high fiber contents, reducing cane productivity. We investigated the biological events contributing to disease symptoms in a smut intermediate-resistant sugarcane genotype by examining the transcriptional profiles (RNAseq shortly after inoculating the plants and immediately after whip emission. The overall picture of disease progression suggests that premature transcriptional reprogramming of the shoot meristem functions continues until the emergence of the whip. The guidance of this altered pattern is potentially primarily related to auxin mobilization in addition to the involvement of other hormonal imbalances. The consequences associated with whip emission are the modulation of typical meristematic functions toward reproductive organ differentiation, requiring strong changes in carbon partitioning and energy production. These changes include the overexpression of genes coding for invertases and trehalose-6P synthase, as well as other enzymes from key metabolic pathways, such as from lignin biosynthesis. This is the first report describing changes in the transcriptional profiles following whip development, providing a hypothetical model and candidate genes to further study sugarcane smut disease progression.

RNAseq Transcriptional Profiling following Whip Development in Sugarcane Smut Disease

Science.gov (United States)

Taniguti, Lucas M.; Peters, Leila P.; Creste, Silvana; Aitken, Karen S.; Van Sluys, Marie-Anne; Kitajima, João P.; Vieira, Maria L. C.; Monteiro-Vitorello, Claudia B.

2016-01-01

Sugarcane smut disease is caused by the biotrophic fungus Sporisorium scitamineum. The disease is characterized by the development of a whip-like structure from the primary meristems, where billions of teliospores are produced. Sugarcane smut also causes tillering and low sucrose and high fiber contents, reducing cane productivity. We investigated the biological events contributing to disease symptoms in a smut intermediate-resistant sugarcane genotype by examining the transcriptional profiles (RNAseq) shortly after inoculating the plants and immediately after whip emission. The overall picture of disease progression suggests that premature transcriptional reprogramming of the shoot meristem functions continues until the emergence of the whip. The guidance of this altered pattern is potentially primarily related to auxin mobilization in addition to the involvement of other hormonal imbalances. The consequences associated with whip emission are the modulation of typical meristematic functions toward reproductive organ differentiation, requiring strong changes in carbon partitioning and energy production. These changes include the overexpression of genes coding for invertases and trehalose-6P synthase, as well as other enzymes from key metabolic pathways, such as from lignin biosynthesis. This is the first report describing changes in the transcriptional profiles following whip development, providing a hypothetical model and candidate genes to further study sugarcane smut disease progression. PMID:27583836

Toxic heavy metal contamination assessment and speciation in sugarcane soil

Science.gov (United States)

Wang, Xiaofei; Deng, Chaobing; Yin, Juan; Tang, Xiang

2018-01-01

The increasing heavy metal pollution in the sugarcane soils along the Great Huanjiang River was caused by leakage and spills of Lead (Pb) and Zinc (Zn) tailing dams during a flood event. Copper (Cu), Zn, Pb, Cadmium (Cd), and Arsenic (As) concentrations of soil samples collected from 16 different sites along the Great Huanjiang River coast typical pollution area were analyzed by Inductive Coupled Plasma Mass Spectrometry (ICP-MS). The mean concentrations of Pb, Cd, Zn, Cu, and As in the sugarcane soils were 151.57 mg/kg, 0.33 mg/kg, 155.52 mg/kg, 14.19 mg/kg, and 18.74 mg/kg, respectively. Results from the analysis of heavy metal speciation distribution showed that Cu, Zn, Pb, and Cd existed in weak acid, reducible, and oxidizable fractions, and the sum of these fractions accounted for significant proportions in sugarcane soils. However, the residual fraction of As with high proportion of reducible fraction indicated that this trace element still poses some environmental risk in the sugarcane soils because of its high content. Assessments of pollution levels revealed that the highest environmental risk was arouse by Pb. In addition, moderate to strong Cd and Zn pollution were found, while As has zero to medium level of pollution and Cu has zero level.

Relationship between sugarcane rust severity and soil properties in louisiana.

Science.gov (United States)

Johnson, Richard M; Grisham, Michael P; Richard, Edward P

2007-06-01

ABSTRACT The extent of spatial and temporal variability of sugarcane rust (Puccinia melanocephala) infestation was related to variation in soil properties in five commercial fields of sugarcane (interspecific hybrids of Saccharum spp., cv. LCP 85-384) in southern Louisiana. Sugarcane fields were grid-soil sampled at several intensities and rust ratings were collected at each point over 6 to 7 weeks. Soil properties exhibited significant variability (coefficients of variation = 9 to 70.1%) and were spatially correlated in 39 of 40 cases with a range of spatial correlation varying from 39 to 201 m. Rust ratings were spatially correlated in 32 of 33 cases, with a range varying from 29 to 241 m. Rust ratings were correlated with several soil properties, most notably soil phosphorus (r = 0.40 to 0.81) and soil sulfur (r = 0.36 to 0.68). Multiple linear regression analysis resulted in coefficients of determination that ranged from 0.22 to 0.73, and discriminant analysis further improved the overall predictive ability of rust models. Finally, contour plots of soil properties and rust levels clearly suggested a link between these two parameters. These combined data suggest that sugarcane growers that apply fertilizer in excess of plant requirements will increase the incidence and severity of rust infestations in their fields.

microRNAs Associated with Drought Response in the Bioenergy Crop Sugarcane (Saccharum spp.)

Science.gov (United States)

Vilela, Romel Duarte; Costa, Gustavo Gilson Lacerda; Dias, Lara Isys; Endres, Laurício; Menossi, Marcelo

2012-01-01

Sugarcane (Saccharum spp.) is one of the most important crops in the world. Drought stress is a major abiotic stress factor that significantly reduces sugarcane yields. However the gene network that mediates plant responses to water stress remains largely unknown in several crop species. Although several microRNAs that mediate post-transcriptional regulation during water stress have been described in other species, the role of the sugarcane microRNAs during drought stress has not been studied. The objective of this work was to identify sugarcane miRNAs that are differentially expressed under drought stress and to correlate this expression with the behavior of two sugarcane cultivars with different drought tolerances. The sugarcane cultivars RB867515 (higher drought tolerance) and RB855536 (lower drought tolerance) were cultivated in a greenhouse for three months and then subjected to drought for 2, 4, 6 or 8 days. By deep sequencing of small RNAs, we were able to identify 18 miRNA families. Among all of the miRNAs thus identified, seven were differentially expressed during drought. Six of these miRNAs were differentially expressed at two days of stress, and five miRNAs were differentially expressed at four days. The expression levels of five miRNAs (ssp-miR164, ssp-miR394, ssp-miR397, ssp-miR399-seq 1 and miR528) were validated by RT-qPCR (quantitative reverse transcriptase PCR). Six precursors and the targets of the differentially expressed miRNA were predicted using an in silico approach and validated by RT-qPCR; many of these targets may play important roles in drought tolerance. These findings constitute a significant increase in the number of identified miRNAs in sugarcane and contribute to the elucidation of the complex regulatory network that is activated by drought stress. PMID:23071617

Automated Metadata Extraction

Science.gov (United States)

2008-06-01

Store [4]. The files purchased from the iTunes Music Store include the following metadata. • Name • Email address of purchaser • Year • Album ...6 3. Music : MP3 and AAC .........................................................................7 4. Tagged Image File Format...Expert Group (MPEG) set of standards for music encoding. Open Document Format (ODF) – an open, license-free, and clearly documented file format

Diversity and antifungal activity of endophytic diazotrophic bacteria colonizing sugarcane in Egypt

Science.gov (United States)

The price of nitrogen continues to increase and is a major input in sugarcane production. Sugarcane grown in Egypt was screened for the presence of nitrogen-fixing bacteria. Nitrogen-free medium LGI-P was used to isolate bacteria from cane stalks. Among the 52 isolates subjected to acetylene redu...

Learning Object Metadata in a Web-Based Learning Environment

NARCIS (Netherlands)

Avgeriou, Paris; Koutoumanos, Anastasios; Retalis, Symeon; Papaspyrou, Nikolaos

2000-01-01

The plethora and variance of learning resources embedded in modern web-based learning environments require a mechanism to enable their structured administration. This goal can be achieved by defining metadata on them and constructing a system that manages the metadata in the context of the learning

Automating the Extraction of Metadata from Archaeological Data Using iRods Rules

Directory of Open Access Journals (Sweden)

David Walling

2011-10-01

Full Text Available The Texas Advanced Computing Center and the Institute for Classical Archaeology at the University of Texas at Austin developed a method that uses iRods rules and a Jython script to automate the extraction of metadata from digital archaeological data. The first step was to create a record-keeping system to classify the data. The record-keeping system employs file and directory hierarchy naming conventions designed specifically to maintain the relationship between the data objects and map the archaeological documentation process. The metadata implicit in the record-keeping system is automatically extracted upon ingest, combined with additional sources of metadata, and stored alongside the data in the iRods preservation environment. This method enables a more organized workflow for the researchers, helps them archive their data close to the moment of data creation, and avoids error prone manual metadata input. We describe the types of metadata extracted and provide technical details of the extraction process and storage of the data and metadata.

OlyMPUS - The Ontology-based Metadata Portal for Unified Semantics

Science.gov (United States)

Huffer, E.; Gleason, J. L.

2015-12-01

The Ontology-based Metadata Portal for Unified Semantics (OlyMPUS), funded by the NASA Earth Science Technology Office Advanced Information Systems Technology program, is an end-to-end system designed to support data consumers and data providers, enabling the latter to register their data sets and provision them with the semantically rich metadata that drives the Ontology-Driven Interactive Search Environment for Earth Sciences (ODISEES). OlyMPUS leverages the semantics and reasoning capabilities of ODISEES to provide data producers with a semi-automated interface for producing the semantically rich metadata needed to support ODISEES' data discovery and access services. It integrates the ODISEES metadata search system with multiple NASA data delivery tools to enable data consumers to create customized data sets for download to their computers, or for NASA Advanced Supercomputing (NAS) facility registered users, directly to NAS storage resources for access by applications running on NAS supercomputers. A core function of NASA's Earth Science Division is research and analysis that uses the full spectrum of data products available in NASA archives. Scientists need to perform complex analyses that identify correlations and non-obvious relationships across all types of Earth System phenomena. Comprehensive analytics are hindered, however, by the fact that many Earth science data products are disparate and hard to synthesize. Variations in how data are collected, processed, gridded, and stored, create challenges for data interoperability and synthesis, which are exacerbated by the sheer volume of available data. Robust, semantically rich metadata can support tools for data discovery and facilitate machine-to-machine transactions with services such as data subsetting, regridding, and reformatting. Such capabilities are critical to enabling the research activities integral to NASA's strategic plans. However, as metadata requirements increase and competing standards emerge

Roles of Non-Coding RNA in Sugarcane-Microbe Interaction.

Science.gov (United States)

Thiebaut, Flávia; Rojas, Cristian A; Grativol, Clícia; Calixto, Edmundo P da R; Motta, Mariana R; Ballesteros, Helkin G F; Peixoto, Barbara; de Lima, Berenice N S; Vieira, Lucas M; Walter, Maria Emilia; de Armas, Elvismary M; Entenza, Júlio O P; Lifschitz, Sergio; Farinelli, Laurent; Hemerly, Adriana S; Ferreira, Paulo C G

2017-12-20

Studies have highlighted the importance of non-coding RNA regulation in plant-microbe interaction. However, the roles of sugarcane microRNAs (miRNAs) in the regulation of disease responses have not been investigated. Firstly, we screened the sRNA transcriptome of sugarcane infected with Acidovorax avenae . Conserved and novel miRNAs were identified. Additionally, small interfering RNAs (siRNAs) were aligned to differentially expressed sequences from the sugarcane transcriptome. Interestingly, many siRNAs aligned to a transcript encoding a copper-transporter gene whose expression was induced in the presence of A. avenae , while the siRNAs were repressed in the presence of A. avenae . Moreover, a long intergenic non-coding RNA was identified as a potential target or decoy of miR408. To extend the bioinformatics analysis, we carried out independent inoculations and the expression patterns of six miRNAs were validated by quantitative reverse transcription-PCR (qRT-PCR). Among these miRNAs, miR408-a copper-microRNA-was downregulated. The cleavage of a putative miR408 target, a laccase, was confirmed by a modified 5'RACE (rapid amplification of cDNA ends) assay. MiR408 was also downregulated in samples infected with other pathogens, but it was upregulated in the presence of a beneficial diazotrophic bacteria. Our results suggest that regulation by miR408 is important in sugarcane sensing whether microorganisms are either pathogenic or beneficial, triggering specific miRNA-mediated regulatory mechanisms accordingly.

Roles of Non-Coding RNA in Sugarcane-Microbe Interaction

Science.gov (United States)

Grativol, Clícia; Motta, Mariana R.; Ballesteros, Helkin G. F.; Peixoto, Barbara; Vieira, Lucas M.; Walter, Maria Emilia; de Armas, Elvismary M.; Entenza, Júlio O. P.; Lifschitz, Sergio; Farinelli, Laurent; Hemerly, Adriana S.

2017-01-01

Studies have highlighted the importance of non-coding RNA regulation in plant-microbe interaction. However, the roles of sugarcane microRNAs (miRNAs) in the regulation of disease responses have not been investigated. Firstly, we screened the sRNA transcriptome of sugarcane infected with Acidovorax avenae. Conserved and novel miRNAs were identified. Additionally, small interfering RNAs (siRNAs) were aligned to differentially expressed sequences from the sugarcane transcriptome. Interestingly, many siRNAs aligned to a transcript encoding a copper-transporter gene whose expression was induced in the presence of A. avenae, while the siRNAs were repressed in the presence of A. avenae. Moreover, a long intergenic non-coding RNA was identified as a potential target or decoy of miR408. To extend the bioinformatics analysis, we carried out independent inoculations and the expression patterns of six miRNAs were validated by quantitative reverse transcription-PCR (qRT-PCR). Among these miRNAs, miR408—a copper-microRNA—was downregulated. The cleavage of a putative miR408 target, a laccase, was confirmed by a modified 5′RACE (rapid amplification of cDNA ends) assay. MiR408 was also downregulated in samples infected with other pathogens, but it was upregulated in the presence of a beneficial diazotrophic bacteria. Our results suggest that regulation by miR408 is important in sugarcane sensing whether microorganisms are either pathogenic or beneficial, triggering specific miRNA-mediated regulatory mechanisms accordingly. PMID:29657296

Roles of Non-Coding RNA in Sugarcane-Microbe Interaction

Directory of Open Access Journals (Sweden)

Flávia Thiebaut

2017-12-01

Full Text Available Studies have highlighted the importance of non-coding RNA regulation in plant-microbe interaction. However, the roles of sugarcane microRNAs (miRNAs in the regulation of disease responses have not been investigated. Firstly, we screened the sRNA transcriptome of sugarcane infected with Acidovorax avenae. Conserved and novel miRNAs were identified. Additionally, small interfering RNAs (siRNAs were aligned to differentially expressed sequences from the sugarcane transcriptome. Interestingly, many siRNAs aligned to a transcript encoding a copper-transporter gene whose expression was induced in the presence of A. avenae, while the siRNAs were repressed in the presence of A. avenae. Moreover, a long intergenic non-coding RNA was identified as a potential target or decoy of miR408. To extend the bioinformatics analysis, we carried out independent inoculations and the expression patterns of six miRNAs were validated by quantitative reverse transcription-PCR (qRT-PCR. Among these miRNAs, miR408—a copper-microRNA—was downregulated. The cleavage of a putative miR408 target, a laccase, was confirmed by a modified 5′RACE (rapid amplification of cDNA ends assay. MiR408 was also downregulated in samples infected with other pathogens, but it was upregulated in the presence of a beneficial diazotrophic bacteria. Our results suggest that regulation by miR408 is important in sugarcane sensing whether microorganisms are either pathogenic or beneficial, triggering specific miRNA-mediated regulatory mechanisms accordingly.

Metadata Quality in Institutional Repositories May be Improved by Addressing Staffing Issues

Directory of Open Access Journals (Sweden)

Elizabeth Stovold

2016-09-01

Full Text Available A Review of: Moulaison, S. H., & Dykas, F. (2016. High-quality metadata and repository staffing: Perceptions of United States–based OpenDOAR participants. Cataloging & Classification Quarterly, 54(2, 101-116. http://dx.doi.org/10.1080/01639374.2015.1116480 Objective – To investigate the quality of institutional repository metadata, metadata practices, and identify barriers to quality. Design – Survey questionnaire. Setting – The OpenDOAR online registry of worldwide repositories. Subjects – A random sample of 50 from 358 administrators of institutional repositories in the United States of America listed in the OpenDOAR registry. Methods – The authors surveyed a random sample of administrators of American institutional repositories included in the OpenDOAR registry. The survey was distributed electronically. Recipients were asked to forward the email if they felt someone else was better suited to respond. There were questions about the demographics of the repository, the metadata creation environment, metadata quality, standards and practices, and obstacles to quality. Results were analyzed in Excel, and qualitative responses were coded by two researchers together. Main results – There was a 42% (n=21 response rate to the section on metadata quality, a 40% (n=20 response rate to the metadata creation section, and 40% (n=20 to the section on obstacles to quality. The majority of respondents rated their metadata quality as average (65%, n=13 or above average (30%, n=5. No one rated the quality as high or poor, while 10% (n=2 rated the quality as below average. The survey found that the majority of descriptive metadata was created by professional (84%, n=16 or paraprofessional (53%, n=10 library staff. Professional staff were commonly involved in creating administrative metadata, reviewing the metadata, and selecting standards and documentation. Department heads and advisory committees were also involved in standards and documentation

Butanol-acetone fermentation of sugar-cane juice

Energy Technology Data Exchange (ETDEWEB)

Perdomo, E V

1958-01-01

Sixteen new varieties of Clostridium acetobutylicum of varying activity were isolated from different sources. The most active one was obtained from sugar-cane roots. The effects of 86 additives were studied. The following formulation gave a 32% yield (with respect to sucrose) of solvent mixture (73% BuOH, 19 to 23% acetone, and 3 to 4% EtOH) sugar-cane juice (I) (20/sup 0/ Brix) 250 ml, ground Vicia sativa 1 g, KH/sub 2/PO/sub 4/ 2.5 g, CaCO/sub 3/ 4 g, H/sub 2/O 1000 ml; the pH of this solution was 5.6 to 6.0. Unclarified, it was inverted by invertase; the other components were added and the mixture was sterilized (20 minutes, 15 pounds).

Role of mutation breeding in sugarcane improvement

International Nuclear Information System (INIS)

Shama Rao, H.K.

1980-01-01

Bud setts of a popular sugarcane var. Co-419 irradiated with Co 60 gamma rays produced wide genetic variations. It was easy to rapidly multiply and maintain the mutants appearing in the MV1 generation by repeated vegetative propagations. Two promising mutants (TS-1 and TS-8) found stable over 8 vegetative generations show increased cane girth and weight, enhanced sucrose content and possible early maturity, as compared to var. Co-419. Large scale field trials under different agroclimatic conditions for yield and mill tests are in progress in collaboration with some of the leading sugar factories in the country. Simultaneously, they are also being tested for disease resistance and agronomic performance at several Government Sugarcane Research Stations. Results obtained so far are presented. (author)

An overview of sugarcane brown rust in Cuba

Directory of Open Access Journals (Sweden)

María La O

Full Text Available ABSTRACT: Multiple pathogens affect sugarcane, among them Puccinia melanocephala, the causal agent of brown rust. This disease was first reported in Cuba in 1979 when it was responsible for a severe attack on the main sugarcane variety B4362. The aims of the present study were to give an overview of sugarcane brown rust in Cuba and show the current disease situation in the country. A retrospective analysis regard to sugarcane cultivar composition resistant to brown rust in Cuba was carried out. In addition 154 genotypes, including the most used progenitors in the breeding program and commercial varieties were evaluated under natural infection conditions. The identity of P. melanocephala was verified by Polymerase Chain Reaction (PCR and by sequencing the ITS1 region. After the introduction of P. melanocephala into Cuba, the susceptible variety, B4362, was replaced by Ja60-5 which remained resistant until 1998. Since 2002, a varietal policy supported by a governmental resolution establishing that any single cultivar cannot occupy more than 20 % of the production area for each production company, local area and province, has been applied. Out of the genotypes evaluated, 49 showed resistance to the disease and 35 intermediate behavior, while 39 were susceptible and 31, highly susceptible. P. melanocephala was detected by PCR in all symptomatic samples and its identify confirmed by sequencing the ITS1 region. The adopted measurement together with permanent phytosanitary monitoring and commercial release of resistant or intermediate cultivars succeeded in avoiding any new epidemic. Inoculum pressure was reduced, even on susceptible and highly susceptible varieties since, by resolution, they cannot occupy more than 10 % of the planted area.

Life cycle assessment of sugarcane ethanol production in India in comparison to Brazil

NARCIS (Netherlands)

Tsiropoulos, Ioannis; Faaij, André P C; Seabra, Joaquim E A; Lundquist, Lars; Schenker, Urs; Briois, Jean François; Patel, Martin K.

2014-01-01

Purpose: India's biofuel programme relies on ethanol production from sugarcane molasses. However, there is limited insight on environmental impacts across the Indian ethanol production chain. This study closes this gap by assessing the environmental impacts of ethanol production from sugarcane

Sugarcane Genotype Performance in Three Environments (Based on Crop Cycle) at Mardan, Pakistan

Science.gov (United States)

Sugarcane breeders often face significant genotype x environment interactions in their trials grown under multiple environments. Hence, genotypes need to be tested for their stability across different environments keeping in view the significant interactions. An experiment comprising 28 sugarcane ge...

Studies of Big Data metadata segmentation between relational and non-relational databases

Science.gov (United States)

Golosova, M. V.; Grigorieva, M. A.; Klimentov, A. A.; Ryabinkin, E. A.; Dimitrov, G.; Potekhin, M.

2015-12-01

In recent years the concepts of Big Data became well established in IT. Systems managing large data volumes produce metadata that describe data and workflows. These metadata are used to obtain information about current system state and for statistical and trend analysis of the processes these systems drive. Over the time the amount of the stored metadata can grow dramatically. In this article we present our studies to demonstrate how metadata storage scalability and performance can be improved by using hybrid RDBMS/NoSQL architecture.

Studies of Big Data metadata segmentation between relational and non-relational databases

CERN Document Server

Golosova, M V; Klimentov, A A; Ryabinkin, E A; Dimitrov, G; Potekhin, M

2015-01-01

In recent years the concepts of Big Data became well established in IT. Systems managing large data volumes produce metadata that describe data and workflows. These metadata are used to obtain information about current system state and for statistical and trend analysis of the processes these systems drive. Over the time the amount of the stored metadata can grow dramatically. In this article we present our studies to demonstrate how metadata storage scalability and performance can be improved by using hybrid RDBMS/NoSQL architecture.

Callus induction, regeneration and transformation of sugarcane ...

African Journals Online (AJOL)

Yomi

2012-03-22

Mar 22, 2012 ... dichlorophenoxyacetic acid (2,4-D), naphthalene acetic acid (NAA), yeast extract and coconut water .... transformed (control) plantlets using CTAB method (Doyle and .... Embryogenic Sugarcane Callus by Image Analysis.

Integrated Array/Metadata Analytics

Science.gov (United States)

Misev, Dimitar; Baumann, Peter

2015-04-01

Data comes in various forms and types, and integration usually presents a problem that is often simply ignored and solved with ad-hoc solutions. Multidimensional arrays are an ubiquitous data type, that we find at the core of virtually all science and engineering domains, as sensor, model, image, statistics data. Naturally, arrays are richly described by and intertwined with additional metadata (alphanumeric relational data, XML, JSON, etc). Database systems, however, a fundamental building block of what we call "Big Data", lack adequate support for modelling and expressing these array data/metadata relationships. Array analytics is hence quite primitive or non-existent at all in modern relational DBMS. Recognizing this, we extended SQL with a new SQL/MDA part seamlessly integrating multidimensional array analytics into the standard database query language. We demonstrate the benefits of SQL/MDA with real-world examples executed in ASQLDB, an open-source mediator system based on HSQLDB and rasdaman, that already implements SQL/MDA.

Metadata and Ontologies in Learning Resources Design

Science.gov (United States)

Vidal C., Christian; Segura Navarrete, Alejandra; Menéndez D., Víctor; Zapata Gonzalez, Alfredo; Prieto M., Manuel

Resource design and development requires knowledge about educational goals, instructional context and information about learner's characteristics among other. An important information source about this knowledge are metadata. However, metadata by themselves do not foresee all necessary information related to resource design. Here we argue the need to use different data and knowledge models to improve understanding the complex processes related to e-learning resources and their management. This paper presents the use of semantic web technologies, as ontologies, supporting the search and selection of resources used in design. Classification is done, based on instructional criteria derived from a knowledge acquisition process, using information provided by IEEE-LOM metadata standard. The knowledge obtained is represented in an ontology using OWL and SWRL. In this work we give evidence of the implementation of a Learning Object Classifier based on ontology. We demonstrate that the use of ontologies can support the design activities in e-learning.

A case for user-generated sensor metadata

Science.gov (United States)

Nüst, Daniel

2015-04-01

Cheap and easy to use sensing technology and new developments in ICT towards a global network of sensors and actuators promise previously unthought of changes for our understanding of the environment. Large professional as well as amateur sensor networks exist, and they are used for specific yet diverse applications across domains such as hydrology, meteorology or early warning systems. However the impact this "abundance of sensors" had so far is somewhat disappointing. There is a gap between (community-driven) sensor networks that could provide very useful data and the users of the data. In our presentation, we argue this is due to a lack of metadata which allows determining the fitness of use of a dataset. Syntactic or semantic interoperability for sensor webs have made great progress and continue to be an active field of research, yet they often are quite complex, which is of course due to the complexity of the problem at hand. But still, we see the most generic information to determine fitness for use is a dataset's provenance, because it allows users to make up their own minds independently from existing classification schemes for data quality. In this work we will make the case how curated user-contributed metadata has the potential to improve this situation. This especially applies for scenarios in which an observed property is applicable in different domains, and for set-ups where the understanding about metadata concepts and (meta-)data quality differs between data provider and user. On the one hand a citizen does not understand the ISO provenance metadata. On the other hand a researcher might find issues in publicly accessible time series published by citizens, which the latter might not be aware of or care about. Because users will have to determine fitness for use for each application on their own anyway, we suggest an online collaboration platform for user-generated metadata based on an extremely simplified data model. In the most basic fashion

FSA 2002 Digital Orthophoto Metadata

Data.gov (United States)

Minnesota Department of Natural Resources — Metadata for the 2002 FSA Color Orthophotos Layer. Each orthophoto is represented by a Quarter 24k Quad tile polygon. The polygon attributes contain the quarter-quad...

ONEMercury: Towards Automatic Annotation of Earth Science Metadata

Science.gov (United States)

Tuarob, S.; Pouchard, L. C.; Noy, N.; Horsburgh, J. S.; Palanisamy, G.

2012-12-01

Earth sciences have become more data-intensive, requiring access to heterogeneous data collected from multiple places, times, and thematic scales. For example, research on climate change may involve exploring and analyzing observational data such as the migration of animals and temperature shifts across the earth, as well as various model-observation inter-comparison studies. Recently, DataONE, a federated data network built to facilitate access to and preservation of environmental and ecological data, has come to exist. ONEMercury has recently been implemented as part of the DataONE project to serve as a portal for discovering and accessing environmental and observational data across the globe. ONEMercury harvests metadata from the data hosted by multiple data repositories and makes it searchable via a common search interface built upon cutting edge search engine technology, allowing users to interact with the system, intelligently filter the search results on the fly, and fetch the data from distributed data sources. Linking data from heterogeneous sources always has a cost. A problem that ONEMercury faces is the different levels of annotation in the harvested metadata records. Poorly annotated records tend to be missed during the search process as they lack meaningful keywords. Furthermore, such records would not be compatible with the advanced search functionality offered by ONEMercury as the interface requires a metadata record be semantically annotated. The explosion of the number of metadata records harvested from an increasing number of data repositories makes it impossible to annotate the harvested records manually, urging the need for a tool capable of automatically annotating poorly curated metadata records. In this paper, we propose a topic-model (TM) based approach for automatic metadata annotation. Our approach mines topics in the set of well annotated records and suggests keywords for poorly annotated records based on topic similarity. We utilize the

Metadata as a means for correspondence on digital media

NARCIS (Netherlands)

Stouffs, R.; Kooistra, J.; Tuncer, B.

2004-01-01

Metadata derive their action from their association to data and from the relationship they maintain with this data. An interpretation of this action is that the metadata lays claim to the data collection to which it is associated, where the claim is successful if the data collection gains quality as

Soil Carbon and Nitrogen Stocks of Different Hawaiian Sugarcane Cultivars

Directory of Open Access Journals (Sweden)

Rebecca Tirado-Corbalá

2015-06-01

Full Text Available Sugarcane has been widely used as a biofuel crop due to its high biological productivity, ease of conversion to ethanol, and its relatively high potential for greenhouse gas reduction and lower environmental impacts relative to other derived biofuels from traditional agronomic crops. In this investigation, we studied four sugarcane cultivars (H-65-7052, H-78-3567, H-86-3792 and H-87-4319 grown on a Hawaiian commercial sugarcane plantation to determine their ability to store and accumulate soil carbon (C and nitrogen (N across a 24-month growth cycle on contrasting soil types. The main study objective establish baseline parameters for biofuel production life cycle analyses; sub-objectives included (1 determining which of four main sugarcane cultivars sequestered the most soil C and (2 assessing how soil C sequestration varies among two common Hawaiian soil series (Pulehu-sandy clay loam and Molokai-clay. Soil samples were collected at 20 cm increments to depths of up to 120 cm using hand augers at the three main growth stages (tillering, grand growth, and maturity from two experimental plots at to observe total carbon (TC, total nitrogen (TN, dissolved organic carbon (DOC and nitrates (NO−3 using laboratory flash combustion for TC and TN and solution filtering and analysis for DOC and NO−3. Aboveground plant biomass was collected and subsampled to determine lignin and C and N content. This study determined that there was an increase of TC with the advancement of growing stages in the studied four sugarcane cultivars at both soil types (increase in TC of 15–35 kg·m2. Nitrogen accumulation was more variable, and NO−3 (<5 ppm were insignificant. The C and N accumulation varies in the whole profile based on the ability of the sugarcane cultivar’s roots to explore and grow in the different soil types. For the purpose of storing C in the soil, cultivar H-65-7052 (TC accumulation of ~30 kg·m−2 and H-86-3792 (25 kg·m−2 rather H-78

Plant resistance in sorghums to the sugarcane aphid Melanaphis sacchari (Hemiptera: Aphididae)

Science.gov (United States)

We evaluated ten sorghum lines that were near or in commercial release with the intent of identifying phenotypic expression of host-plant resistance to the sugarcane aphid. Two of the ten entries OL2042 and SP7715 expressed a high degree of resistance to the sugarcane aphid with damage ratings <3.0...

Finding Atmospheric Composition (AC) Metadata

Science.gov (United States)

Strub, Richard F..; Falke, Stefan; Fiakowski, Ed; Kempler, Steve; Lynnes, Chris; Goussev, Oleg

2015-01-01

The Atmospheric Composition Portal (ACP) is an aggregator and curator of information related to remotely sensed atmospheric composition data and analysis. It uses existing tools and technologies and, where needed, enhances those capabilities to provide interoperable access, tools, and contextual guidance for scientists and value-adding organizations using remotely sensed atmospheric composition data. The initial focus is on Essential Climate Variables identified by the Global Climate Observing System CH4, CO, CO2, NO2, O3, SO2 and aerosols. This poster addresses our efforts in building the ACP Data Table, an interface to help discover and understand remotely sensed data that are related to atmospheric composition science and applications. We harvested GCMD, CWIC, GEOSS metadata catalogs using machine to machine technologies - OpenSearch, Web Services. We also manually investigated the plethora of CEOS data providers portals and other catalogs where that data might be aggregated. This poster is our experience of the excellence, variety, and challenges we encountered.Conclusions:1.The significant benefits that the major catalogs provide are their machine to machine tools like OpenSearch and Web Services rather than any GUI usability improvements due to the large amount of data in their catalog.2.There is a trend at the large catalogs towards simulating small data provider portals through advanced services. 3.Populating metadata catalogs using ISO19115 is too complex for users to do in a consistent way, difficult to parse visually or with XML libraries, and too complex for Java XML binders like CASTOR.4.The ability to search for Ids first and then for data (GCMD and ECHO) is better for machine to machine operations rather than the timeouts experienced when returning the entire metadata entry at once. 5.Metadata harvest and export activities between the major catalogs has led to a significant amount of duplication. (This is currently being addressed) 6.Most (if not all

Separation of metadata and pixel data to speed DICOM tag morphing.

Science.gov (United States)

Ismail, Mahmoud; Philbin, James

2013-01-01

The DICOM information model combines pixel data and metadata in single DICOM object. It is not possible to access the metadata separately from the pixel data. There are use cases where only metadata is accessed. The current DICOM object format increases the running time of those use cases. Tag morphing is one of those use cases. Tag morphing includes deletion, insertion or manipulation of one or more of the metadata attributes. It is typically used for order reconciliation on study acquisition or to localize the issuer of patient ID (IPID) and the patient ID attributes when data from one domain is transferred to a different domain. In this work, we propose using Multi-Series DICOM (MSD) objects, which separate metadata from pixel data and remove duplicate attributes, to reduce the time required for Tag Morphing. The time required to update a set of study attributes in each format is compared. The results show that the MSD format significantly reduces the time required for tag morphing.

Mercury- Distributed Metadata Management, Data Discovery and Access System

Science.gov (United States)

Palanisamy, Giri; Wilson, Bruce E.; Devarakonda, Ranjeet; Green, James M.

2007-12-01

Mercury is a federated metadata harvesting, search and retrieval tool based on both open source and ORNL- developed software. It was originally developed for NASA, and the Mercury development consortium now includes funding from NASA, USGS, and DOE. Mercury supports various metadata standards including XML, Z39.50, FGDC, Dublin-Core, Darwin-Core, EML, and ISO-19115 (under development). Mercury provides a single portal to information contained in disparate data management systems. It collects metadata and key data from contributing project servers distributed around the world and builds a centralized index. The Mercury search interfaces then allow the users to perform simple, fielded, spatial and temporal searches across these metadata sources. This centralized repository of metadata with distributed data sources provides extremely fast search results to the user, while allowing data providers to advertise the availability of their data and maintain complete control and ownership of that data. Mercury supports various projects including: ORNL DAAC, NBII, DADDI, LBA, NARSTO, CDIAC, OCEAN, I3N, IAI, ESIP and ARM. The new Mercury system is based on a Service Oriented Architecture and supports various services such as Thesaurus Service, Gazetteer Web Service and UDDI Directory Services. This system also provides various search services including: RSS, Geo-RSS, OpenSearch, Web Services and Portlets. Other features include: Filtering and dynamic sorting of search results, book-markable search results, save, retrieve, and modify search criteria.

Exogenous nitric oxide improves sugarcane growth and photosynthesis under water deficit.

Science.gov (United States)

Silveira, Neidiquele M; Frungillo, Lucas; Marcos, Fernanda C C; Pelegrino, Milena T; Miranda, Marcela T; Seabra, Amedea B; Salgado, Ione; Machado, Eduardo C; Ribeiro, Rafael V

2016-07-01

Nitric oxide (NO)-mediated redox signaling plays a role in alleviating the negative impact of water stress in sugarcane plants by improving root growth and photosynthesis. Drought is an environmental limitation affecting sugarcane growth and yield. The redox-active molecule nitric oxide (NO) is known to modulate plant responses to stressful conditions. NO may react with glutathione (GSH) to form S-nitrosoglutathione (GSNO), which is considered the main reservoir of NO in cells. Here, we investigate the role of NO in alleviating the effects of water deficit on growth and photosynthesis of sugarcane plants. Well-hydrated plants were compared to plants under drought and sprayed with mock (water) or GSNO at concentrations ranging from 10 to 1000 μM. Leaf GSNO sprayed plants showed significant improvement of relative water content and leaf and root dry matter under drought compared to mock-sprayed plants. Additionally, plants sprayed with GSNO (≥ 100 μM) showed higher leaf gas exchange and photochemical activity as compared to mock-sprayed plants under water deficit and after rehydration. Surprisingly, a raise in the total S-nitrosothiols content was observed in leaves sprayed with GSH or GSNO, suggesting a long-term role of NO-mediated responses to water deficit. Experiments with leaf discs fumigated with NO gas also suggested a role of NO in drought tolerance of sugarcane plants. Overall, our data indicate that the NO-mediated redox signaling plays a role in alleviating the negative effects of water stress in sugarcane plants by protecting the photosynthetic apparatus and improving shoot and root growth.

Mites associated with sugarcane crop and with native trees from adjacent Atlantic forest fragment in Brazil.

Science.gov (United States)

Duarte, Mércia E; Navia, Denise; dos Santos, Lucas R; Rideiqui, Pedro J S; Silva, Edmilson S

2015-08-01

In some Brazilian regions the Atlantic forest biome is currently restrict to fragments occurring amid monocultures, as sugarcane crops in the Northeast region. Important influence of forest remnants over mite fauna of permanent crops have been showed, however it has been poorly explored on annual crops. The first step for understanding ecological relationship in an agricultural systems is known its composition. The objective of this study was to investigate the plant-inhabiting mite fauna associated with sugarcane crop (Saccharum officinarum L.) (Poaceae) and caboatã (Cupania oblongifolia Mart.) (Sapindaceae) trees in the state of Alagoas, Brazil. Sugarcane stalks and sugarcane and caboatã apical, middle and basal leaves were sampled. A total of 2565 mites were collected from sugarcane and classified into seven families of Trombidiformes and Mesostigmata orders, with most individuals belonging to the Eriophyidae, Tetranychidae and Tarsonemidae families. Among predatory mites, the Phytoseiidae were the most common. A total of 1878 mites were found on C. oblongifolia and classified into 13 families of Trombidiformes and Mesostigmata orders. The most abundant phytophagous mite family on caboatã was also Eriophyidae. In contrast to sugarcane, Ascidae was the most common predatory mite family observed in caboatã. No phytophagous species were common to both sugarcane and C. oblongifolia. However two predatory mites were shared between host plants. Although mites associated with only one native species in the forest fragment were evaluated in this study, our preliminary results suggest Atlantic forest native vegetation can present an important role in the sugarcane agricultural system as a source of natural enemies.

Cytometry metadata in XML

Science.gov (United States)

Leif, Robert C.; Leif, Stephanie H.

2016-04-01

Introduction: The International Society for Advancement of Cytometry (ISAC) has created a standard for the Minimum Information about a Flow Cytometry Experiment (MIFlowCyt 1.0). CytometryML will serve as a common metadata standard for flow and image cytometry (digital microscopy). Methods: The MIFlowCyt data-types were created, as is the rest of CytometryML, in the XML Schema Definition Language (XSD1.1). The datatypes are primarily based on the Flow Cytometry and the Digital Imaging and Communication (DICOM) standards. A small section of the code was formatted with standard HTML formatting elements (p, h1, h2, etc.). Results:1) The part of MIFlowCyt that describes the Experimental Overview including the specimen and substantial parts of several other major elements has been implemented as CytometryML XML schemas (www.cytometryml.org). 2) The feasibility of using MIFlowCyt to provide the combination of an overview, table of contents, and/or an index of a scientific paper or a report has been demonstrated. Previously, a sample electronic publication, EPUB, was created that could contain both MIFlowCyt metadata as well as the binary data. Conclusions: The use of CytometryML technology together with XHTML5 and CSS permits the metadata to be directly formatted and together with the binary data to be stored in an EPUB container. This will facilitate: formatting, data- mining, presentation, data verification, and inclusion in structured research, clinical, and regulatory documents, as well as demonstrate a publication's adherence to the MIFlowCyt standard, promote interoperability and should also result in the textual and numeric data being published using web technology without any change in composition.

Sugarcane trash management assessed by the interaction of yield with soil properties

Directory of Open Access Journals (Sweden)

Flávio Carlos Dalchiavon

2013-12-01

Full Text Available Currently, sugarcane plays an important global role, particularly with a view to alternative energy sources. Thus, in a sugarcane field of the mill Vale do Paraná S/A Álcool e Açúcar, Rubineia, São Paulo State, managed under two green cane harvest systems (cane trash left on and cane trash removed from the soil, Pearson and spatial correlations between the sugarcane yield (variety RB855035 in the third cut and soil physical and chemical properties were studied to identify the property best correlated with stalk yield and the best harvest method. For this purpose, two geostatistical grids (121 sampling points on 1.30 ha were installed on a eutrophic Red Argisol (homogeneous slope of 0.065 m m-1, in 2011, to determine the properties: stalk yield and sugarcane plant population, and soil resistance to penetration, gravimetric moisture, bulk density, and carbon stock, in the layers 0-0.20 and 0.20-0.40 m. The data were analyzed by descriptive, linear correlation and geostatistical analysis. In both treatments, the property stand density was best correlated with sugarcane yield (r = 0.725 in the trash mulching treatment - TM and r = 0.769 in the trash removal treatment - TR. However, in relation to the soil properties, bulk density (0-0.20 m was best correlated (r = 0.305 in TM, r = 0.211 in TR. Similarly, from the spatial point of view, stand density was the property that best explained the sugarcane yield. However, in the TM treatment the density (0.20-0.40 m was the only soil property spatially correlated with stalk yield. The carbon stock in the soil of the TM was 11.5 % higher than in the TR treatment. Results of the TM treatment were best, also with regard to soil management and conservation.

Using normalized difference vegetation index (NDVI) to estimate sugarcane yield and yield components

Science.gov (United States)

Sugarcane (Saccharum spp.) yield and yield components are important traits for growers and scientists to evaluate and select cultivars. Collection of these yield data would be labor intensive and time consuming in the early selection stages of sugarcane breeding cultivar development programs with a ...

Identifying Quantitative Trait Loci (QTLs) and Developing Diagnostic Markers Linked to Orange Rust Resistance in Sugarcane (Saccharum spp.).

Science.gov (United States)

Yang, Xiping; Islam, Md S; Sood, Sushma; Maya, Stephanie; Hanson, Erik A; Comstock, Jack; Wang, Jianping

2018-01-01

Sugarcane ( Saccharum spp.) is an important economic crop, contributing up to 80% of table sugar used in the world and has become a promising feedstock for biofuel production. Sugarcane production has been threatened by many diseases, and fungicide applications for disease control have been opted out for sustainable agriculture. Orange rust is one of the major diseases impacting sugarcane production worldwide. Identifying quantitative trait loci (QTLs) and developing diagnostic markers are valuable for breeding programs to expedite release of superior sugarcane cultivars for disease control. In this study, an F 1 segregating population derived from a cross between two hybrid sugarcane clones, CP95-1039 and CP88-1762, was evaluated for orange rust resistance in replicated trails. Three QTLs controlling orange rust resistance in sugarcane (qORR109, qORR4 and qORR102) were identified for the first time ever, which can explain 58, 12 and 8% of the phenotypic variation, separately. We also characterized 1,574 sugarcane putative resistance ( R ) genes. These sugarcane putative R genes and simple sequence repeats in the QTL intervals were further used to develop diagnostic markers for marker-assisted selection of orange rust resistance. A PCR-based Resistance gene-derived maker, G1 was developed, which showed significant association with orange rust resistance. The putative QTLs and marker developed in this study can be effectively utilized in sugarcane breeding programs to facilitate the selection process, thus contributing to the sustainable agriculture for orange rust disease control.

Feruloyl esterase from Aspergillus clavatus improves xylan hydrolysis of sugarcane bagasse

Directory of Open Access Journals (Sweden)

Dyoni M. de Oliveira

2016-12-01

Full Text Available Feruloyl esterase is a subclass of carboxylic acid esterases with the capacity to release ferulic acid and other cinnamic acids from plant cell walls and synthetic substrates. Feruloyl esterases act synergistically with xylanases removing ferulic acid residues esterified to arabinoxylans. Feruloyl esterase type D from Aspergillus clavatus (AcFAE was expressed in Escherichia coli, purified, and applied with a commercial xylanase consortium (Novozymes for hydrolysis of sugarcane bagasse. Feruloyl esterase plus xylanase increased 5.13-fold the releasing of ferulic acid from sugarcane bagasse. Removal of only 7.7% of ferulic acid content by AcFAE increased 97.3% the sugarcane bagasse hydrolysis by xylanase. These data support the use of AcFAE as an interesting adjuvant enzyme to improve lignocellulose digestion and biotechnological tool for biorefineries.

Sugarcane productivity correlated with physical-chemical attributes to create soil management zone

Directory of Open Access Journals (Sweden)

Flávio Carlos Dalchiavon

2013-10-01

Full Text Available The socioeconomic importance of sugar cane in Brazil is unquestionable because it is the raw material for the production of ethanol and sugar. The accurate spatial intervention in the management of the crop, resulting zones of soil management, increases productivity as well as its agricultural yields. The spatial and Person's correlations between sugarcane attributes and physico-chemical attributes of a Typic Tropustalf were studied in the growing season of 2009, in Suzanápolis, State of São Paulo, Brazil (20°28'10'' S lat.; 50°49'20'' W long., in order to obtain the one that best correlates with agricultural productivity. Thus, the geostatistical grid with 120 sampling points was installed to soil and data collection in a plot of 14.6 ha with second crop sugarcane. Due to their substantial and excellent linear and spatial correlations with the productivity of the sugarcane, the population of plants and the organic matter content of the soil, by evidencing substantial correlations, linear and spatial, with the productivity of sugarcane, were indicators of management zones strongly attached to such productivity.

A TaqMan Real-Time PCR Assay for Detection and Quantification of Sporisorium scitamineum in Sugarcane

Directory of Open Access Journals (Sweden)

Yachun Su

2013-01-01

Full Text Available Sporisorium scitamineum is a fungal smut pathogen epidemic in sugarcane producing areas. Early detection and proper identification of the smut are an essential requirement in its management practice. In this study, we developed a TaqMan real-time PCR assay using specific primers (bEQ-F/bEQ-R and a TaqMan probe (bEQ-P which were designed based on the bE (b East mating type gene (Genbank Accession no. U61290.1. This method was more sensitive (a detection limit of 10 ag pbE DNA and 0.8 ng sugarcane genomic DNA than that of conventional PCR (10 fg and 100 ng, resp.. Reliability was demonstrated through the positive detection of samples collected from artificially inoculated sugarcane plantlets (FN40. This assay was capable of detecting the smut pathogen at the initial stage (12 h of infection and suitable for inspection of sugarcane pathogen-free seed cane and seedlings. Furthermore, quantification of pathogen was verified in pathogen-challenged buds in different sugarcane genotypes, which suggested its feasibility for evaluation of smut resistance in different sugarcane genotypes. Taken together, this novel assay can be used as a diagnostic tool for sensitive, accurate, fast, and quantitative detection of the smut pathogen especially for asymptomatic seed cane or plants and evaluation of smut resistance of sugarcane genotypes.

Soil bacterial community shifts associated with sugarcane straw removal

Science.gov (United States)

Pimentel, Laisa; Gumiere, Thiago; Andreote, Fernando; Cerri, Carlos

2017-04-01

In Brazil, the adoption of the mechanical unburned sugarcane harvest potentially increase the quantity of residue left in the field after harvesting. Economically, this material has a high potential for second generation ethanol (2G) production. However, crop residues have an essential role in diverse properties and processes in the soil. The greater part of the uncertainties about straw removal for 2G ethanol production is based on its effects in soil microbial community. In this sense, it is important to identify the main impacts of sugarcane straw removal on soil microbial community. Therefore, we conducted a field study, during one year, in Valparaíso (São Paulo state - Brazil) to evaluate the effects of straw decomposition on soil bacterial community. Specifically, we wanted: i) to compare the rates of straw removal and ii) to evaluate the effects of straw decomposition on soil bacterial groups over one year. The experiment was in a randomized block design with treatments arranged in strip plot. The treatments are different rates of sugarcane straw removal, namely: no removal, 50, 75 and 100% of straw removal. Soil sampling was carried out at 0, 4, 8 and 12 months after the sugarcane harvest (August 2015). Total DNA was extracted from soil using the PowersoilTM DNA Isolation kit. And the abundance of bacterial in each soil sample was estimated via quantification of 16S rRNA gene. The composition of the bacterial communities was estimated via terminal restriction fragment length polymorphism (T-RFLP) analysis, and the T-RF sizes were performed on a 3500 Genetic Analyzer. Finally, the results were examined with GeneMapper 4.1 software. There was bacterial community shifts through the time and among the rates of sugarcane straw removal. Bacterial community was firstly determined by the time scale, which explained 29.16% of total variation. Rates of straw removal explained 11.55% of shifts on bacterial community. Distribution through the time is an important

Sustainability assessment of sugarcane biorefinery and molasses ethanol production in Thailand using eco-efficiency indicator

International Nuclear Information System (INIS)

Silalertruksa, Thapat; Gheewala, Shabbir H.; Pongpat, Patcharaporn

2015-01-01

Highlights: • Sugarcane biorefinery in Thailand is evaluated using the eco-efficiency concept. • Green cane along with cane trash use for electricity yields highest eco-efficiency. • Proposed biorefinery system increases eco-efficiency by 20–70%. - Abstract: The study aims to evaluate the sugarcane biorefinery and molasses ethanol production in Thailand using the combined environmental and economic sustainability indicator, so called “Eco-efficiency”. Four sugarcane biorefinery scenarios in Thailand are evaluated. The total output values (US$) and the life cycle greenhouse gas (GHG) emissions (kg CO_2eq) are selected as the indicators for characterizing economic and environmental performance, respectively. The results show that the biorefinery system of mechanized farming along with cane trash utilization for power generation yields the highest eco-efficiency. The benefits come from the increased value added of the biorefinery together with the decreased GHG emissions of the biorefinery system. As compared to the base case scenario, the new systems proposed result in the eco-efficiency improvement by around 20–70%. The biorefinery concept induces reduction of GHG emissions attributed to molasses ethanol. Green cane production and harvesting results in further lowering of the GHG emissions. Integration of sugarcane biomass utilization across the entire sugarcane complex would enhance the sustainability of the sugarcane production system.

Sugarcane straw and the populations of pests and nematodes

Directory of Open Access Journals (Sweden)

Leila Luci Dinardo-Miranda

2013-10-01

Full Text Available The green cane harvesting represented a significant change in sugarcane ecosystem due to the presence of straw left on the soil and to the absence of fire. These two factors may affect the populations of pests and their natural enemies. Among the pests benefit from the green cane harvesting stand out the spittlebug, Mahanarva fimbriolata, the curculionid Sphenophorus levis and sugarcane borer, Diatraea saccharalis. In areas of green cane harvesting, the population of these species grew faster than in areas of burnt cane. On the other hand, there are virtually no records of attacks by lesser cornstalk borers in areas of green cane harvesting. Populations of plant parasitic nematodes and the beetles Migdolus fryanus, very important pests of sugarcane, were apparently not affected by the green cane harvesting. Despite the absence of more consistent information, it appears that populations of ants and the giant borer Telchin licus can increase in green cane areas, due primarily to the difficulty of pest control. The partial or total removal of straw from the field represents an additional change to the ecosystem that could alter the status of pests and nematodes. It is likely that spittlebug, the curculionid S. levis and sugarcane borer populations decrease if a portion of the straw is removed from the field. However, the pest populations in areas where the straw is collected will not return to their original conditions at the time of burnt cane harvesting because the absence of fire will be maintained.

Sugarcane leaf area estimate obtained from the corrected Normalized Difference Vegetation Index (NDVI

Directory of Open Access Journals (Sweden)

Rodrigo Moura Pereira

2016-06-01

Full Text Available Large farmland areas and the knowledge on the interaction between solar radiation and vegetation canopies have increased the use of data from orbital remote sensors in sugarcane monitoring. However, the constituents of the atmosphere affect the reflectance values obtained by imaging sensors. This study aimed at improving a sugarcane Leaf Area Index (LAI estimation model, concerning the Normalized Difference Vegetation Index (NDVI subjected to atmospheric correction. The model generated by the NDVI with atmospheric correction showed the best results (R2 = 0.84; d = 0.95; MAE = 0.44; RMSE = 0.55, in relation to the other models compared. LAI estimation with this model, during the sugarcane plant cycle, reached a maximum of 4.8 at the vegetative growth phase and 2.3 at the end of the maturation phase. Thus, the use of atmospheric correction to estimate the sugarcane LAI is recommended, since this procedure increases the correlations between the LAI estimated by image and by plant parameters.

Multivariate genetic divergence among sugarcane clones by multivariate analysis associated with mixed models

Directory of Open Access Journals (Sweden)

Valéria Rosa Lopes

2014-02-01

Full Text Available This work had the aim to evaluate the genetic divergence in sugarcane clones using the methodology of graphic dispersion by principal components analysis associated to linear mixed models, indentifying the more divergent and productive genotypes with more precision, for a subsequent combination. 138 sugarcane clones of the RB97 series of the Sugarcane Breeding Program of the Universidade Federal do Parana, more two standard cultivars were evaluated in three environments, with two replications. The two first components explained 96% of the total variation, sufficiently for explaining the divergence found. The variable that contributed the most to de divergence was kilogram of brix per plot (BKP followed by brix, mass of 10 stalks and number of stalks per plot. The more divergent sugarcane clones were RB975008, RB975112, RB975019, RB975153 and RB975067 and the more productive clones were RB975269, RB977533, RB975102, RB975317 and RB975038.

OAI-PMH repositories : quality issues regarding metadata and protocol compliance, tutorial 1

CERN Multimedia

CERN. Geneva; Cole, Tim

2005-01-01

This tutorial will provide an overview of emerging guidelines and best practices for OAI data providers and how they relate to expectations and needs of service providers. The audience should already be familiar with OAI protocol basics and have at least some experience with either data provider or service provider implementations. The speakers will present both protocol compliance best practices and general recommendations for creating and disseminating high-quality "shareable metadata". Protocol best practices discussion will include coverage of OAI identifiers, date-stamps, deleted records, sets, resumption tokens, about containers, branding, errors conditions, HTTP server issues, and repository lifecycle issues. Discussion of what makes for good, shareable metadata will cover topics including character encoding, namespace and XML schema issues, metadata crosswalk issues, support of multiple metadata formats, general metadata authoring recommendations, specific recommendations for use of Dublin Core elemen...

Selection of Suitable Endogenous Reference Genes for Relative Copy Number Detection in Sugarcane

Directory of Open Access Journals (Sweden)

Bantong Xue

2014-05-01

Full Text Available Transgene copy number has a great impact on the expression level and stability of exogenous gene in transgenic plants. Proper selection of endogenous reference genes is necessary for detection of genetic components in genetically modification (GM crops by quantitative real-time PCR (qPCR or by qualitative PCR approach, especially in sugarcane with polyploid and aneuploid genomic structure. qPCR technique has been widely accepted as an accurate, time-saving method on determination of copy numbers in transgenic plants and on detection of genetically modified plants to meet the regulatory and legislative requirement. In this study, to find a suitable endogenous reference gene and its real-time PCR assay for sugarcane (Saccharum spp. hybrids DNA content quantification, we evaluated a set of potential “single copy” genes including P4H, APRT, ENOL, CYC, TST and PRR, through qualitative PCR and absolute quantitative PCR. Based on copy number comparisons among different sugarcane genotypes, including five S. officinarum, one S. spontaneum and two S. spp. hybrids, these endogenous genes fell into three groups: ENOL-3—high copy number group, TST-1 and PRR-1—medium copy number group, P4H-1, APRT-2 and CYC-2—low copy number group. Among these tested genes, P4H, APRT and CYC were the most stable, while ENOL and TST were the least stable across different sugarcane genotypes. Therefore, three primer pairs of P4H-3, APRT-2 and CYC-2 were then selected as the suitable reference gene primer pairs for sugarcane. The test of multi-target reference genes revealed that the APRT gene was a specific amplicon, suggesting this gene is the most suitable to be used as an endogenous reference target for sugarcane DNA content quantification. These results should be helpful for establishing accurate and reliable qualitative and quantitative PCR analysis of GM sugarcane.

Loss of soil (macro)fauna due to the expansion of Brazilian sugarcane acreage.

Science.gov (United States)

Franco, André L C; Bartz, Marie L C; Cherubin, Maurício R; Baretta, Dilmar; Cerri, Carlos E P; Feigl, Brigitte J; Wall, Diana H; Davies, Christian A; Cerri, Carlos C

2016-09-01

Land use changes (LUC) from pasture to sugarcane (Saccharum spp.) crop are expected to add 6.4Mha of new sugarcane land by 2021 in the Brazilian Cerrado and Atlantic Forest biomes. We assessed the effects of these LUC on the abundance and community structure of animals that inhabit soils belowground through a field survey using chronosequences of land uses comprising native vegetation, pasture, and sugarcane along a 1000-km-long transect across these two major tropical biomes in Brazil. Macrofauna community composition differed among land uses. While most groups were associated with samples taken in native vegetation, high abundance of termites and earthworms appeared associated with pasture soils. Linear mixed effects analysis showed that LUC affected total abundance (X(2)(1)=6.79, p=0.03) and taxa richness (X(2)(1)=6.08, p=0.04) of soil macrofauna. Abundance increased from 411±70individualsm(-2) in native vegetation to 1111±202individualsm(-2) in pasture, but decreased sharply to 106±24individualsm(-2) in sugarcane soils. Diversity decreased 24% from native vegetation to pasture, and 39% from pasture to sugarcane. Thus, a reduction of ~90% in soil macrofauna abundance, besides a loss of ~40% in the diversity of macrofauna groups, can be expected when sugarcane crops replace pasture in Brazilian tropical soils. In general, higher abundances of major macrofauna groups (ants, coleopterans, earthworms, and termites) were associated with higher acidity and low contents of macronutrients and organic matter in soil. This study draws attention for a significant biodiversity loss belowground due to tropical LUC in sugarcane expansion areas. Given that many groups of soil macrofauna are recognized as key mediators of ecosystem processes such as soil aggregation, nutrients cycling and soil carbon storage, our results warrant further efforts to understand the impacts of altering belowground biodiversity and composition on soil functioning and agriculture performance

Efficacy of Alkali-treated Sugarcane Fiber for Improving Physicochemical and Textural Properties of Meat Emulsions with Different Fat Levels

Science.gov (United States)

Kim, Hyun-Wook; Setyabrata, Derico; Lee, Yong-Jae; Brad Kim, Yuan H.

2018-01-01

Abstract The objective of this study was to evaluate the efficacy of alkaline-treated sugarcane bagasse fiber on physicochemical and textural properties of meat emulsion with different fat levels. Crude sugarcane bagasse fiber (CSF) was treated with calcium hydroxide (Ca(OH2)) to obtain alkaline-treated sugarcane bagasse fiber (ASF). The two types of sugarcane bagasse fiber (CSF and ASF) were incorporated at 2% levels in pork meat emulsions prepared with 5%, 10% and 20% fat levels. Alkaline-treatment markedly increased acid detergent fiber content (p=0.002), but significantly decreased protein, fat, ash and other carbohydrate contents. ASF exhibited significantly higher water-binding capacity, but lower oil-binding and emulsifying capacities than CSF. Meat emulsions formulated with 10% fat and 2% sugarcane bagasse fiber had equivalent cooking loss and textural properties to control meat emulsion (20% fat without sugarcane bagasse fiber). The two types of sugarcane bagasse fiber had similar impacts on proximate composition, cooking yield and texture of meat emulsion at the same fat level, respectively (p>0.05). Our results confirm that sugarcane bagasse fiber could be a functional food ingredient for improving physicochemical and textural properties of meat emulsion, at 2% addition level. Further, the altered functional properties of alkaline-treated sugarcane bagasse fiber had no impacts on physicochemical and textural properties of meat emulsions, regardless of fat level at 5%, 10% and 20%. PMID:29805281

Provenance metadata gathering and cataloguing of EFIT++ code execution

Energy Technology Data Exchange (ETDEWEB)

Lupelli, I., E-mail: ivan.lupelli@ccfe.ac.uk [CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB (United Kingdom); Muir, D.G.; Appel, L.; Akers, R.; Carr, M. [CCFE, Culham Science Centre, Abingdon, Oxon OX14 3DB (United Kingdom); Abreu, P. [Instituto de Plasmas e Fusão Nuclear, Instituto Superior Técnico, Universidade de Lisboa, 1049-001 Lisboa (Portugal)

2015-10-15

Highlights: • An approach for automatic gathering of provenance metadata has been presented. • A provenance metadata catalogue has been created. • The overhead in the code runtime is less than 10%. • The metadata/data size ratio is about ∼20%. • A visualization interface based on Gephi, has been presented. - Abstract: Journal publications, as the final product of research activity, are the result of an extensive complex modeling and data analysis effort. It is of paramount importance, therefore, to capture the origins and derivation of the published data in order to achieve high levels of scientific reproducibility, transparency, internal and external data reuse and dissemination. The consequence of the modern research paradigm is that high performance computing and data management systems, together with metadata cataloguing, have become crucial elements within the nuclear fusion scientific data lifecycle. This paper describes an approach to the task of automatically gathering and cataloguing provenance metadata, currently under development and testing at Culham Center for Fusion Energy. The approach is being applied to a machine-agnostic code that calculates the axisymmetric equilibrium force balance in tokamaks, EFIT++, as a proof of principle test. The proposed approach avoids any code instrumentation or modification. It is based on the observation and monitoring of input preparation, workflow and code execution, system calls, log file data collection and interaction with the version control system. Pre-processing, post-processing, and data export and storage are monitored during the code runtime. Input data signals are captured using a data distribution platform called IDAM. The final objective of the catalogue is to create a complete description of the modeling activity, including user comments, and the relationship between data output, the main experimental database and the execution environment. For an intershot or post-pulse analysis (∼1000

Provenance metadata gathering and cataloguing of EFIT++ code execution

International Nuclear Information System (INIS)

Lupelli, I.; Muir, D.G.; Appel, L.; Akers, R.; Carr, M.; Abreu, P.

2015-01-01

Highlights: • An approach for automatic gathering of provenance metadata has been presented. • A provenance metadata catalogue has been created. • The overhead in the code runtime is less than 10%. • The metadata/data size ratio is about ∼20%. • A visualization interface based on Gephi, has been presented. - Abstract: Journal publications, as the final product of research activity, are the result of an extensive complex modeling and data analysis effort. It is of paramount importance, therefore, to capture the origins and derivation of the published data in order to achieve high levels of scientific reproducibility, transparency, internal and external data reuse and dissemination. The consequence of the modern research paradigm is that high performance computing and data management systems, together with metadata cataloguing, have become crucial elements within the nuclear fusion scientific data lifecycle. This paper describes an approach to the task of automatically gathering and cataloguing provenance metadata, currently under development and testing at Culham Center for Fusion Energy. The approach is being applied to a machine-agnostic code that calculates the axisymmetric equilibrium force balance in tokamaks, EFIT++, as a proof of principle test. The proposed approach avoids any code instrumentation or modification. It is based on the observation and monitoring of input preparation, workflow and code execution, system calls, log file data collection and interaction with the version control system. Pre-processing, post-processing, and data export and storage are monitored during the code runtime. Input data signals are captured using a data distribution platform called IDAM. The final objective of the catalogue is to create a complete description of the modeling activity, including user comments, and the relationship between data output, the main experimental database and the execution environment. For an intershot or post-pulse analysis (∼1000

Residual recovery and yield performance of nitrogen fertilizer applied at sugarcane planting

Directory of Open Access Journals (Sweden)

Henrique Coutinho Junqueira Franco

2015-12-01

Full Text Available ABSTRACTThe low effectiveness of nitrogen fertilizer (N is a substantial concern that threatens global sugarcane production. The aim of the research reported in this paper was to assess the residual effect of N-fertilizer applied at sugarcane planting over four crop seasons in relation to sugarcane crop yield. Toward this end three field experiments were established in the state of São Paulo, Brazil, during February of 2005 and July of 2009, in a randomized block design with four treatments: 0, 40, 80 and 120 kg ha−1 of N applied as urea during sugarcane planting. Within each plot, a microplot was established to which 15N-labeled urea was applied. The application of N at planting increased plant cane yield in two of the three sites and sucrose content at the other, whereas the only residual effect was higher sucrose content in one of the following ratoons. The combined effect was an increase in sugar yield for three of the 11 crop seasons evaluated. Over the crop cycle of a plant cane and three ratoon crops, only 35 % of the applied N was recovered, split 75, 13, 7 and 5 % in the plant cane, first, second and third ratoons, respectively. These findings document the low efficiency of N recovery by sugarcane, which increases the risk that excessive N fertilization will reduce profitability and have an adverse effect on the environment.

Physical chemical evaluation of sugarcane spirit with Anatto subjected to gamma irradiation for aging

International Nuclear Information System (INIS)

Perina, Vanessa C.S.; Arthur, Valter; Silva, Lucia A.C.S.; Harder, Marcia N.C.; Pires, Juliana A.; Scanholato, Mariana; Santos, Mariana R.; Bortoleto, Gisele G.

2011-01-01

The sugarcane spirit beverage has economic and cultural importance in Brazil, and is produced by distilling the fermented sugarcane juice. The aging process, generally done in oak barrels, consists of chemical reactions which occur slowly and continuously, leading to richer and more complex flavours. Annatto, a native fruit from tropical America is used in the production of natural dyes, in the replacement for artificial colorants, especially by the food industry. Also, the beverage industry uses it to make products resembling the natural aged ones. Nowadays, modern methods use irradiation to accelerate the aging process. There are many reasons to use it in sugarcane spirit production: sterilizing the wort, changing sensory characteristics of sugarcane liquor and aging speedup. For this study, samples of sugarcane spirit were obtained at FATEC Piracicaba and annatto was added at a ratio of 3%, when using annatto seeds, and 0.25%, when using annatto extract. The samples, except the controls, were directly irradiated in polyethylene containers with doses of 200 Gy and 300 Gy at a rate of 0.406 Gy/h. The evaluation parameters were soluble solids, pH, acidity and ashes content. For statistical purposes, the Tukey test was used with a 5% significance level. From the obtained results, the gamma radiation ages the sugarcane spirit and parameters as soluble solids and acidity can be used for aging determination. Annatto addition is allowed in the process. (author)

Fast processing of digital imaging and communications in medicine (DICOM) metadata using multiseries DICOM format.

Science.gov (United States)

Ismail, Mahmoud; Philbin, James

2015-04-01

The digital imaging and communications in medicine (DICOM) information model combines pixel data and its metadata in a single object. There are user scenarios that only need metadata manipulation, such as deidentification and study migration. Most picture archiving and communication system use a database to store and update the metadata rather than updating the raw DICOM files themselves. The multiseries DICOM (MSD) format separates metadata from pixel data and eliminates duplicate attributes. This work promotes storing DICOM studies in MSD format to reduce the metadata processing time. A set of experiments are performed that update the metadata of a set of DICOM studies for deidentification and migration. The studies are stored in both the traditional single frame DICOM (SFD) format and the MSD format. The results show that it is faster to update studies' metadata in MSD format than in SFD format because the bulk data is separated in MSD and is not retrieved from the storage system. In addition, it is space efficient to store the deidentified studies in MSD format as it shares the same bulk data object with the original study. In summary, separation of metadata from pixel data using the MSD format provides fast metadata access and speeds up applications that process only the metadata.

The Use of Metadata Visualisation Assist Information Retrieval

Science.gov (United States)

2007-10-01

album title, the track length and the genre of music . Again, any of these pieces of information can be used to quickly search and locate specific...that person. Music files also have metadata tags, in a format called ID3. This usually contains information such as the artist, the song title, the...tracks, to provide more information about the entire music collection, or to find similar or diverse tracks within the collection. Metadata is

Land Suitability Assessment for Sugarcane in "Herois de Caxito" (Angola

Directory of Open Access Journals (Sweden)

Baert, G.

2005-01-01

Full Text Available The suitability of the soils surrounding the sugarcane plantation at "Herois de Caxito" (7068 ha is assessed. The main goal is to identify land suitability for the enlargement of the present plantation, using FAO land evaluation models (modified to suit Herois de Caxito conditions and GIS. Calculations of the radiationthermal production potential (RPP, land production potential (LPP, irrigation suitability index, and evaluation of the irrigation water quality are done. The water-limited production potential (WPP is found equal to the RPP, because water needs were fully met under irrigation. Maps showing the spatial distribution of the LPP and the suitability for irrigation are generated. The matching of irrigation and fertility indices has shown that, about 40% of the soils with good fertility for sugarcane production present low suitability for irrigation, the main limitations being the very fine texture and the drainage. The available surface water at Herois de Caxito (Dande river is of very good quality for irrigation of sugarcane.

Preparation and characterization of super absorbent polymer from sugarcane bagasse

International Nuclear Information System (INIS)

Wiwien Andriyanti; Suyanti; Ngasifudin

2012-01-01

Sugarcane bagasse is a source of biomass which large enough numbers and has not been fully exploited. At this time has developed a super absorbent polymer material of sugarcane bagasse that can absorb water up to several times of its own weight and keep this water. Super absorbent polymers can be used as a soil conditioner that can be used as an absorber and storage of ground water, the giver of nutrients for plants, and can improve soil properties. The purpose of this study is to make and characterization of super absorbent polymer (PCS) from sugarcane bagasse. Preparation of super absorbent polymers (PCS) has been done by grafting method using ionizing radiation from Electron Beam Engineering (MBE) 350 mA keV/10. Irradiation process carried out with a dose variation of 20, 35, and 50 kGy. Increasing doses of radiation will increase the percentage fraction of transplantation (grafting) and the fraction of water absorption ability (swelling ratio). (author)

Linked data for libraries, archives and museums how to clean, link and publish your metadata

CERN Document Server

Hooland, Seth van

2014-01-01

This highly practical handbook teaches you how to unlock the value of your existing metadata through cleaning, reconciliation, enrichment and linking and how to streamline the process of new metadata creation. Libraries, archives and museums are facing up to the challenge of providing access to fast growing collections whilst managing cuts to budgets. Key to this is the creation, linking and publishing of good quality metadata as Linked Data that will allow their collections to be discovered, accessed and disseminated in a sustainable manner. This highly practical handbook teaches you how to unlock the value of your existing metadata through cleaning, reconciliation, enrichment and linking and how to streamline the process of new metadata creation. Metadata experts Seth van Hooland and Ruben Verborgh introduce the key concepts of metadata standards and Linked Data and how they can be practically applied to existing metadata, giving readers the tools and understanding to achieve maximum results with limited re...

Normalized Metadata Generation for Human Retrieval Using Multiple Video Surveillance Cameras

Directory of Open Access Journals (Sweden)

Jaehoon Jung

2016-06-01

Full Text Available Since it is impossible for surveillance personnel to keep monitoring videos from a multiple camera-based surveillance system, an efficient technique is needed to help recognize important situations by retrieving the metadata of an object-of-interest. In a multiple camera-based surveillance system, an object detected in a camera has a different shape in another camera, which is a critical issue of wide-range, real-time surveillance systems. In order to address the problem, this paper presents an object retrieval method by extracting the normalized metadata of an object-of-interest from multiple, heterogeneous cameras. The proposed metadata generation algorithm consists of three steps: (i generation of a three-dimensional (3D human model; (ii human object-based automatic scene calibration; and (iii metadata generation. More specifically, an appropriately-generated 3D human model provides the foot-to-head direction information that is used as the input of the automatic calibration of each camera. The normalized object information is used to retrieve an object-of-interest in a wide-range, multiple-camera surveillance system in the form of metadata. Experimental results show that the 3D human model matches the ground truth, and automatic calibration-based normalization of metadata enables a successful retrieval and tracking of a human object in the multiple-camera video surveillance system.

The sugarcane signal transduction (SUCAST catalogue: prospecting signal transduction in sugarcane

Directory of Open Access Journals (Sweden)

Glaucia Mendes Souza

2001-12-01

Full Text Available EST sequencing has enabled the discovery of many new genes in a vast array of organisms, and the utility of this approach to the scientific community is greatly increased by the establishment of fully annotated databases. The present study aimed to identify sugarcane ESTs sequenced in the sugarcane expressed sequence tag (SUCEST project (http://sucest.lad.ic.unicamp.br that corresponded to signal transduction components. We also produced a sugarcane signal transduction (SUCAST catalogue (http://sucest.lad.ic.unicamp.br/private/mining-reports/QG/QG-mining.htm that covered the main categories and pathways. Expressed sequence tags (ESTs encoding enzymes for hormone (gibberellins, ethylene, auxins, abscisic acid and jasmonic acid biosynthetic pathways were found and tissue specificity was inferred from their relative frequency of occurrence in the different libraries. Whenever possible, transducers of hormones and plant peptide signaling were catalogued to the respective pathway. Over 100 receptors were found in sugarcane, which contains a large family of Ser/Thr kinase receptors and also photoreceptors, histidine kinase receptors and their response regulators. G-protein and small GTPases were analyzed and compared to known members of these families found in mammalian and plant systems. Major kinase and phosphatase pathways were mapped, with special attention being given to the MAP kinase and the inositol pathway, both of which are well known in plants.O sequenciamento de ESTs (etiquetas de sequencias transcritas tem possibilitado a descoberta de muitos novos genes em uma ampla variedade de organismos. Um aumento do aproveitamento desta informação pela comunidade científica tem sido possível graças ao desenvolvimento de base de dados contendo seqüências completamente anotadas. O trabalho aqui relatado teve como objetivo a identificação de ESTs de cana de açúcar seqüenciadas através do projeto SUCEST (http://sucest.lad.ic. unicamp.br que

Ametryn Leaching in Soils from the Sugarcane Region in Northeastern Brazilian

OpenAIRE

SILVA, K.S.; FREITAS, F.C.L.; BRAGA, D.F.; DOMBROSKI, J.L.D.; SANTOS, A.F.B.

2016-01-01

ABSTRACT Ametryn is one of the most widely used herbicides in the sugarcane culture. Little is known about the interactions between this herbicide and the attributes of soils in the sugarcane region of northeastern Brazil. This knowledge, before recommending herbicide, will minimize the negative effects on the environment, particularly on water resources, and will ensure weed control efficacy. In this work, ametryn leaching potential was estimated through bioassays and chromatography, in five...

Shared Geospatial Metadata Repository for Ontario University Libraries: Collaborative Approaches

Science.gov (United States)

Forward, Erin; Leahey, Amber; Trimble, Leanne

2015-01-01

Successfully providing access to special collections of digital geospatial data in academic libraries relies upon complete and accurate metadata. Creating and maintaining metadata using specialized standards is a formidable challenge for libraries. The Ontario Council of University Libraries' Scholars GeoPortal project, which created a shared…

Statistical Data Processing with R – Metadata Driven Approach

Directory of Open Access Journals (Sweden)

Rudi SELJAK

2016-06-01

Full Text Available In recent years the Statistical Office of the Republic of Slovenia has put a lot of effort into re-designing its statistical process. We replaced the classical stove-pipe oriented production system with general software solutions, based on the metadata driven approach. This means that one general program code, which is parametrized with process metadata, is used for data processing for a particular survey. Currently, the general program code is entirely based on SAS macros, but in the future we would like to explore how successfully statistical software R can be used for this approach. Paper describes the metadata driven principle for data validation, generic software solution and main issues connected with the use of statistical software R for this approach.

AN APPROACH TO FINANCIAL RISK IN A PORTFOLIO FOR PLANNING THE INDUSTRIAL PRODUCTION OF PRODUCTS DERIVED FROM SUGARCANE

Directory of Open Access Journals (Sweden)

Thárcylla R.N. Clemente

2015-12-01

Full Text Available ABSTRACT Brazil's location and tropical weather conditions are favourable cultivating sugarcane, which has led to Brazil being one of the world's largest producers of sugarcane. The influence of the sugarcane industry on its economy stands out among the indicators of Brazilian economic growth and because the diversified investment when planning the production of products derived from this sector is encouraged. The decision on which derivative (for example, crystal sugar, anhydrous ethanol, or hydrous ethanol to produce from raw sugarcane can be modelled as an investment decision in a portfolio decision problem whenever a combination of these products is considered. As to the future price of these commodities, raw sugarcane is considered to be capital that should be invested. Thus, this paper puts forward a decision model which uses concepts from Decision Analysis and Bayesian Risk Analysis that may well assist the process of managing assets in the Brazilian sugarcane industry by considering the financial aspect when compiling a portfolio for planning production.

Sugarcane yield estimation for climatic conditions in the state of Goiás

Directory of Open Access Journals (Sweden)

Jordana Moura Caetano

Full Text Available ABSTRACT Models that estimate potential and depleted crop yield according to climatic variable enable the crop planning and production quantification for a specific region. Therefore, the objective of this study was to compare methods to sugarcane yield estimates grown in the climatic condition in the central part of Goiás, Brazil. So, Agroecological Zone Method (ZAE and the model proposed by Scarpari (S were correlated with real data of sugarcane yield from an experimental area, located in Santo Antônio de Goiás, state of Goiás, Brazil. Data yield refer to the crops of 2008/2009 (sugarcane plant, 2009/2010, 2010/2011 and 2011/2012 (ratoon sugarcane. Yield rates were calculated as a function of atmospheric water demand and water deficit in the area under study. Real and estimated yields were adjusted in function of productivity loss due to cutting stage of sugarcane, using an average reduction in productivity observed in the experimental area and the average reduction in the state of Goiás. The results indicated that the ZAE method, considering the water deficit, displayed good yield estimates for cane-plant (d > 0.90. Water deficit decreased the yield rates (r = -0.8636; α = 0.05 while the thermal sum increased that rate for all evaluated harvests (r > 0.68; α = 0.05.

Brazilian sugarcane ethanol as an expandable green alternative to crude oil use

Science.gov (United States)

Jaiswal, Deepak; de Souza, Amanda P.; Larsen, Søren; Lebauer, David S.; Miguez, Fernando E.; Sparovek, Gerd; Bollero, Germán; Buckeridge, Marcos S.; Long, Stephen P.

2017-11-01

Reduction of CO2 emissions will require a transition from fossil fuels to alternative energy sources. Expansion of Brazilian sugarcane ethanol provides one near-term scalable solution to reduce CO2 emissions from the global transport sector. In contrast to corn ethanol, the Brazilian sugarcane ethanol system may offset 86% of CO2 emissions compared to oil use, and emissions resulting from land-use change to sugarcane are paid back in just 2-8 years. But, it has been uncertain how much further expansion is possible given increasing demand for food and animal feed, climate change impacts and protection of natural ecosystems. We show that Brazilian sugarcane ethanol can provide the equivalent of 3.63-12.77 Mb d-1 of crude oil by 2045 under projected climate change while protecting forests under conservation and accounting for future land demand for food and animal feed production. The corresponding range of CO2 offsets is 0.55-2.0 Gigatons yr-1. This would displace 3.8-13.7% of crude oil consumption and 1.5-5.6% of net CO2 emission globally relative to data for 2014.

Pyraclostrobin wash-off from sugarcane leaves and aerobic dissipation in agricultural soil.

Science.gov (United States)

Fulcher, James M; Wayment, Darcey G; White, Paul M; Webber, Charles L

2014-03-12

To mitigate damage from the fungal sugarcane pathogen brown rust (Puccinia melanocephala), a Section 18 Emergency Use Label was put in place by the United States Environmental Protection Agency (U.S. EPA) for the application of pyraclostrobin (trade name Headline SC, produced by BASF, Research Triangle Park, NC) on sugarcane in 2008. To assess the dynamics of this fungicide in Louisiana soil, samples (n = 24) from a non-treated field were spiked with pyraclostrobin (3.1 μg g(-1)) and analyzed in laboratory conditions over the course of 63 days using quick, easy, cheap, effective, rugged, and safe (QuEChERS) dispersive solid-phase extraction/high-performance liquid chromatography with ultraviolet-visible detection (dSPE/HPLC-UV). Modeling was performed using Microsoft Excel to predict DTx values. Pyraclostrobin was found to follow biphasic kinetics with DT50 and DT90 values of 60 and 282 days, suggesting that it is moderately persistent to persistent in soils. Wash-off studies on sugarcane indicate that very little fungicide is in the wash-off after 48 h. If applied to sugarcane according to label recommendations, the fungicide should have minimal dissipation from rainfall events.

A LCA (life cycle assessment) of the methanol production from sugarcane bagasse

International Nuclear Information System (INIS)

Reno, Maria Luiza Grillo; Lora, Electo Eduardo Silva; Palacio, Jose Carlos Escobar; Venturini, Osvaldo Jose; Buchgeister, Jens; Almazan, Oscar

2011-01-01

Nowadays one of the most important environmental issues is the exponential increase of the greenhouse effect by the polluting action of the industrial and transport sectors. The production of biofuels is considered a viable alternative for the pollution mitigation but also to promote rural development. The work presents an analysis of the environmental impacts of the methanol production from sugarcane bagasse, taking into consideration the balance of the energy life cycle and its net environmental impacts, both are included in a LCA (Life Cycle Assessment) approach. The evaluation is done as a case study of a 100,000 t/y methanol plant, using sugarcane bagasse as raw material. The methanol is produced through the BTL (Biomass to Liquid) route. The results of the environmental impacts were compared to others LCA studies of biofuel and it was showed that there are significant differences of environmental performance among the existing biofuel production system, even for the same feedstock. The differences are dependent on many factors such as farming practices, technology of the biomass conversion. With relation to the result of output/input ratio, the methanol production from sugarcane bagasse showed to be a feasible alternative for the substitution of an amount of fossil methanol obtained from natural gas. -- Highlights: → High and favorable energy ratio value of methanol from bagasse. → Sugarcane production has a low participation on environmental impacts. → The gasification and methanol synthesis can be combined in a biorefinery. → Farming biomass could cause the environmental impact land competition. → The trash of sugarcane can be used successfully in methanol production.

Prioritizing Crop Management to Increase Nitrogen Use Efficiency in Australian Sugarcane Crops.

Science.gov (United States)

Thorburn, Peter J; Biggs, Jody S; Palmer, Jeda; Meier, Elizabeth A; Verburg, Kirsten; Skocaj, Danielle M

2017-01-01

Sugarcane production relies on the application of large amounts of nitrogen (N) fertilizer. However, application of N in excess of crop needs can lead to loss of N to the environment, which can negatively impact ecosystems. This is of particular concern in Australia where the majority of sugarcane is grown within catchments that drain directly into the World Heritage listed Great Barrier Reef Marine Park. Multiple factors that impact crop yield and N inputs of sugarcane production systems can affect N use efficiency (NUE), yet the efficacy many of these factors have not been examined in detail. We undertook an extensive simulation analysis of NUE in Australian sugarcane production systems to investigate (1) the impacts of climate on factors determining NUE, (2) the range and drivers of NUE, and (3) regional variation in sugarcane N requirements. We found that the interactions between climate, soils, and management produced a wide range of simulated NUE, ranging from ∼0.3 Mg cane (kg N) -1 , where yields were low (i.e., 5 Mg cane (kg N) -1 in plant crops where yields were high and N inputs low. Of the management practices simulated (N fertilizer rate, timing, and splitting; fallow management; tillage intensity; and in-field traffic management), the only practice that significantly influenced NUE in ratoon crops was N fertilizer application rate. N rate also influenced NUE in plant crops together with the management of the preceding fallow. In addition, there is regional variation in N fertilizer requirement that could make N fertilizer recommendations more specific. While our results show that complex interrelationships exist between climate, crop growth, N fertilizer rates and N losses to the environment, they highlight the priority that should be placed on optimizing N application rate and fallow management to improve NUE in Australian sugarcane production systems. New initiatives in seasonal climate forecasting, decisions support systems and enhanced efficiency

Prioritizing Crop Management to Increase Nitrogen Use Efficiency in Australian Sugarcane Crops

Directory of Open Access Journals (Sweden)

Peter J. Thorburn

2017-09-01

Full Text Available Sugarcane production relies on the application of large amounts of nitrogen (N fertilizer. However, application of N in excess of crop needs can lead to loss of N to the environment, which can negatively impact ecosystems. This is of particular concern in Australia where the majority of sugarcane is grown within catchments that drain directly into the World Heritage listed Great Barrier Reef Marine Park. Multiple factors that impact crop yield and N inputs of sugarcane production systems can affect N use efficiency (NUE, yet the efficacy many of these factors have not been examined in detail. We undertook an extensive simulation analysis of NUE in Australian sugarcane production systems to investigate (1 the impacts of climate on factors determining NUE, (2 the range and drivers of NUE, and (3 regional variation in sugarcane N requirements. We found that the interactions between climate, soils, and management produced a wide range of simulated NUE, ranging from ∼0.3 Mg cane (kg N-1, where yields were low (i.e., <50 Mg ha-1 and N inputs were high, to >5 Mg cane (kg N-1 in plant crops where yields were high and N inputs low. Of the management practices simulated (N fertilizer rate, timing, and splitting; fallow management; tillage intensity; and in-field traffic management, the only practice that significantly influenced NUE in ratoon crops was N fertilizer application rate. N rate also influenced NUE in plant crops together with the management of the preceding fallow. In addition, there is regional variation in N fertilizer requirement that could make N fertilizer recommendations more specific. While our results show that complex interrelationships exist between climate, crop growth, N fertilizer rates and N losses to the environment, they highlight the priority that should be placed on optimizing N application rate and fallow management to improve NUE in Australian sugarcane production systems. New initiatives in seasonal climate forecasting

Burnt sugarcane harvesting - cardiovascular effects on a group of healthy workers, Brazil.

Directory of Open Access Journals (Sweden)

Cristiane Maria Galvão Barbosa

Full Text Available Brazil is the world's largest producer of sugarcane. Harvest is predominantly manual, exposing workers to health risks: intense physical exertion, heat, pollutants from sugarcane burning.Panel study to evaluate the effects of burnt sugarcane harvesting on blood markers and on cardiovascular system.Twenty-eight healthy male workers, living in the countryside of Brazil were submitted to blood markers, blood pressure, heart rate variability, cardiopulmonary exercise testing, sympathetic nerve activity evaluation and forearm blood flow measures (venous occlusion plethysmography during burnt sugarcane harvesting and four months later while they performed other activities in sugar cane culture.Mean participant age was 31 ± 6.3 years, and had worked for 9.8 ± 8.4 years on sugarcane work. Work during the harvest period was associated with higher serum levels of Creatine Kinase - 136.5 U/L (IQR: 108.5-216.0 vs. 104.5 U/L (IQR: 77.5-170.5, (p = 0.001; plasma Malondialdehyde-7.5 ± 1.4 µM/dl vs. 6.9 ± 1.0 µM/dl, (p = 0.058; Glutathione Peroxidase - 55.1 ± 11.8 Ug/Hb vs. 39.5 ± 9.5 Ug/Hb, (p<0.001; Glutathione Transferase- 3.4±1.3 Ug/Hb vs. 3.0 ± 1.3 Ug/Hb, (p = 0.001; and 24-hour systolic blood pressure - 120.1 ± 10.3 mmHg vs. 117.0 ± 10.0 mmHg, (p = 0.034. In cardiopulmonary exercise testing, rest-to-peak diastolic blood pressure increased by 11.12 mmHg and 5.13 mmHg in the harvest and non-harvest period, respectively. A 10 miliseconds reduction in rMSSD and a 10 burst/min increase in sympathetic nerve activity were associated to 2.2 and 1.8 mmHg rises in systolic arterial pressure, respectively.Work in burnt sugarcane harvesting was associated with changes in blood markers and higher blood pressure, which may be related to autonomic imbalance.

A METHOD FOR EXERGY ANALYSIS OF SUGARCANE BAGASSE BOILERS

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CORTEZ L.A.B.

1998-01-01

Full Text Available This work presents a method to conduct a thermodynamic analysis of sugarcane bagasse boilers. The method is based on the standard and actual reactions which allows the calculation of the enthalpies of each process subequation and the exergies of each of the main flowrates participating in the combustion. The method is presented using an example with real data from a sugarcane bagasse boiler. A summary of the results obtained is also presented together based on the 1st Law of Thermodynamics analysis, the exergetic efficiencies, and the irreversibility rates. The method presented is very rigorous with respect to data consistency, particularly for the flue gas composition.

A Comparative Study on Metadata Scheme of Chinese and American Open Data Platforms

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Yang Sinan

2018-01-01

Full Text Available [Purpose/significance] Open government data is conducive to the rational development and utilization of data resources. It can encourage social innovation and promote economic development. Besides, in order to ensure effective utilization and social increment of open government data, high-quality metadata schemes is necessary. [Method/process] Firstly, this paper analyzed the related research of open government data at home and abroad. Then, it investigated the open metadata schemes of some Chinese main local governments’ data platforms, and made a comparison with the metadata standard of American open government data. [Result/conclusion] This paper reveals that there are some disadvantages about Chinese local government open data affect the use effect of open data, which including that different governments use different data metadata schemes, the description of data set is too simple for further utilization and usually presented in HTML Web page format with lower machine-readable. Therefore, our government should come up with a standardized metadata schemes by drawing on the international mature and effective metadata standard, to ensure the social needs of high quality and high value data.

Climate Variability and Sugarcane Yield in Louisiana.

Science.gov (United States)

Greenland, David

2005-11-01

This paper seeks to understand the role that climate variability has on annual yield of sugarcane in Louisiana. Unique features of sugarcane growth in Louisiana and nonclimatic, yield-influencing factors make this goal an interesting and challenging one. Several methods of seeking and establishing the relations between yield and climate variables are employed. First, yield climate relations were investigated at a single research station where crop variety and growing conditions could be held constant and yield relations could be established between a predominant older crop variety and a newer one. Interviews with crop experts and a literature survey were used to identify potential climatic factors that control yield. A statistical analysis was performed using statewide yield data from the American Sugar Cane League from 1963 to 2002 and a climate database. Yield values for later years were adjusted downward to form an adjusted yield dataset. The climate database was principally constructed from daily and monthly values of maximum and minimum temperature and daily and monthly total precipitation for six cooperative weather-reporting stations representative of the area of sugarcane production. The influence of 74 different, though not independent, climate-related variables on sugarcane yield was investigated. The fact that a climate signal exists is demonstrated by comparing mean values of the climate variables corresponding to the upper and lower third of adjusted yield values. Most of these mean-value differences show an intuitively plausible difference between the high- and low-yield years. The difference between means of the climate variables for years corresponding to the upper and lower third of annual yield values for 13 of the variables is statistically significant at or above the 90% level. A correlation matrix was used to identify the variables that had the largest influence on annual yield. Four variables [called here critical climatic variables (CCV

Policies, Socioeconomic, Institutional and Biophysical Factors Influencing the Change from Rice to Sugarcane in Nong Bua Lamphu Province, Thailand

Science.gov (United States)

Lakapunrat, Narinpat; Thapa, Gopal B.

2017-06-01

For the past decade, Thailand pursued a strategy of promoting biofuel crop production, including sugarcane, to meet the ever increasing energy demand and to increase the income of farmers. This study analyzed the influence of policy instruments implemented to promote the sugarcane cultivation, farm household socioeconomic levels, biophysical, and institutional factors driving the conversion of rice fields into sugarcane farms. Primary information was collected from 230 farm households through a structured questionnaire. Relevant policy documents published by the responsible government agencies were the main sources of secondary information collected for policy analysis. The analyses revealed that farmers in the study area converted 25-75% of their rice fields into sugarcane farms as a result of implementation of policy instruments that made sugarcane financially far more attractive than rice. The results of the regression analysis showed that eight variables were found significant and positively influenced the conversion of rice fields into sugarcane farms. These were access to extension services, information, sugarcane loading stations, and ground water for irrigation, and duration of experience in sugarcane farming as well as household head's age and education. Irrespective of landholding size, the majority of farmers were not concerned about food security. In view of the finding, if feasible, in the form of additional price supports and commercial cane sugar index-based pricing strategies to promote sugarcane production should benefit all concerned farmers. Likewise, attention should be paid to deliver essential extension and marketing services in an effective way, particularly to those farmers who are not receiving such services.

Development and integration of an SSR-based molecular identity database into sugarcane breeding program

Science.gov (United States)

Sugarcane breeding is very difficult and it takes 12 to 14 years to develop a new cultivar for commercial production. This is because sugarcane varieties are highly polyploid, inter-specific hybrids with 100 to 130 chromosomes that may vary across geographical areas. Other obstacles/constraints incl...

Identification and Functional Characterization of Sugarcane Invertase Inhibitor (ShINH1: A Potential Candidate for Reducing Pre- and Post-harvest Loss of Sucrose in Sugarcane

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Suresha G. Shivalingamurthy

2018-05-01

Full Text Available In sugarcane, invertase enzymes play a key role in sucrose accumulation and are also involved in futile reactions where sucrose is continuously degraded during the pre- and post-harvest period, thereby reducing sugar yield and recovery. Invertase inhibitor (INVINH proteins play a key role in post-translation regulation of plant invertases through which sucrose hydrolysis is controlled. INVINH proteins are small (18 kDa members of the pectin methylesterase inhibitor superfamily and they are moderately conserved across plants. In the present study, we identified two INVINH genes from sugarcane, ShINH1 and ShINH2. In silico characterization of the encoded proteins revealed 43% sequence identity at the amino acid level, confirming the non-allelic nature of the proteins. The presence of putative signal peptide and subcellular targeting sequences revealed that ShINH1 and ShINH2 likely have apoplasmic and vacuolar localization, respectively. Experimental visualization of ShINH1–GFP revealed that ShINHI is indeed exported to the apoplast. Differential tissue-specific and developmental expression of ShINH1 between leaf, stalk, flower and root suggest that it plays a role in controlling source-sink metabolic regulation during sucrose accumulation in sugarcane. ShINH1 is expressed at relatively high levels in leaves and stalk compared to flowers and roots, and expression decreases significantly toward internodal maturity during stalk development. ShINH1 is expressed at variable levels in flowers with no specific association to floral maturity. Production of recombinant ShINH1 enabled experimental validation of protein function under in vitro conditions. Recombinant ShINH1 potently inhibited acid invertase (IC50 22.5 nM, making it a candidate for controlling pre- and post-harvest deterioration of sucrose in sugarcane. Our results indicate that ShINH1 and ShINH2 are likely to play a regulatory role in sucrose accumulation and contribute to the improvement

EUDAT B2FIND : A Cross-Discipline Metadata Service and Discovery Portal

Science.gov (United States)

Widmann, Heinrich; Thiemann, Hannes

2016-04-01

The European Data Infrastructure (EUDAT) project aims at a pan-European environment that supports a variety of multiple research communities and individuals to manage the rising tide of scientific data by advanced data management technologies. This led to the establishment of the community-driven Collaborative Data Infrastructure that implements common data services and storage resources to tackle the basic requirements and the specific challenges of international and interdisciplinary research data management. The metadata service B2FIND plays a central role in this context by providing a simple and user-friendly discovery portal to find research data collections stored in EUDAT data centers or in other repositories. For this we store the diverse metadata collected from heterogeneous sources in a comprehensive joint metadata catalogue and make them searchable in an open data portal. The implemented metadata ingestion workflow consists of three steps. First the metadata records - provided either by various research communities or via other EUDAT services - are harvested. Afterwards the raw metadata records are converted and mapped to unified key-value dictionaries as specified by the B2FIND schema. The semantic mapping of the non-uniform, community specific metadata to homogenous structured datasets is hereby the most subtle and challenging task. To assure and improve the quality of the metadata this mapping process is accompanied by • iterative and intense exchange with the community representatives, • usage of controlled vocabularies and community specific ontologies and • formal and semantic validation. Finally the mapped and checked records are uploaded as datasets to the catalogue, which is based on the open source data portal software CKAN. CKAN provides a rich RESTful JSON API and uses SOLR for dataset indexing that enables users to query and search in the catalogue. The homogenization of the community specific data models and vocabularies enables not

Sugarcane biorefineries: Case studies applied to the Brazilian sugar–alcohol industry

International Nuclear Information System (INIS)

Renó, Maria Luiza Grillo; Olmo, Oscar Almazán del; Palacio, José Carlos Escobar; Lora, Electo Eduardo Silva; Venturini, Osvaldo José

2014-01-01

Highlights: • Advanced system of co-generation improves the energy performance of biorefineries. • Sugarcane straw as additional source of fuel in the biorefinery resulted positive. • The farming and transport of sugarcane cause the main environmental impacts. - Abstract: The use of biomasses is becoming increasingly appealing alternative, to give an partial solution lack of energy, with an ecofriendly approach, having on sugarcane a solid fundament; that receives the new and valuable complement of the innovative concept of the biorefineries it is productive installations, that can be summarized as to reach the higher overall yield from the raw materials, with the lowest environmental impact, at minimum energy input and giving the maximum of the energy output. The biorefinery is the true valuable option of a wide diversification, with by-products like the single cell protein and biogas from the distillery vinasse, new oxidants like methanol, second generation biofuels, biobutanol, etc. In this context this paper presents a study of five different configurations of biorefineries. Each case study being a system based on an autonomous distillery or sugar mill with an annexed distillery and coproduction of methanol from bagasse. The paper includes the use of sugarcane harvest residues (mainly straw) and a BIG–GT plant (Biomass Integrated Gasification–Gas Turbine) as alternatives to fulfill the energy demands of the complex

Cultivating C4 crops in a changing climate: sugarcane in Ghana

International Nuclear Information System (INIS)

Black, Emily; Vidale, Pier Luigi; Osborne, Tom; Van den Hoof, Catherine; Verhoef, Anne; Cuadra, Santiago Vianna

2012-01-01

Over the next few decades, it is expected that increasing fossil fuel prices will lead to a proliferation of energy crop cultivation initiatives. The environmental sustainability of these activities is thus a pressing issue—particularly when they take place in vulnerable regions, such as West Africa. In more general terms, the effect of increased CO 2 concentrations and higher temperatures on biomass production and evapotranspiration affects the evolution of the global hydrological and carbon cycles. Investigating these processes for a C4 crop, such as sugarcane, thus provides an opportunity both to extend our understanding of the impact of climate change, and to assess our capacity to model the underpinning processes. This paper applies a process-based crop model to sugarcane in Ghana (where cultivation is planned), and the São Paulo region of Brazil (which has a well-established sugarcane industry). We show that, in the Daka River region of Ghana, provided there is sufficient irrigation, it is possible to generate approximately 75% of the yield achieved in the São Paulo region. In the final part of the study, the production of sugarcane under an idealized temperature increase climate change scenario is explored. It is shown that doubling CO 2 mitigates the degree of water stress associated with a 4 °C increase in temperature. (letter)

Frequency and distribution of the brown rust resistance gene Bru1 and implications for the Louisiana sugarcane breeding programme

Science.gov (United States)

Brown rust, caused by the fungus Puccinia melanocephala, is an important disease of sugarcane posing an increasing threat to sugarcane industries worldwide. A major gene, Bru1, has been shown to contribute a significant proportion of brown rust resistance in multiple sugarcane industries. The recent...

FSA 2003-2004 Digital Orthophoto Metadata

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Minnesota Department of Natural Resources — Metadata for the 2003-2004 FSA Color Orthophotos Layer. Each orthophoto is represented by a Quarter 24k Quad tile polygon. The polygon attributes contain the...

Probing genetic diversity to characterize red rot resistance in sugarcane

Energy Technology Data Exchange (ETDEWEB)

Mumtaz, A S; Dure-e-Nayab,; Iqbal, M J; Shinwari, Z.K., E-mail: asmumtaz@qau.edu.pk

2011-10-15

Genetic diversity was assessed in a set of twelve sugarcane genotypes using Random Amplified Polymorphic DNA (RAPD). A total of thirty-two oligo-primers were employed, sixteen of them revealed amplification at 149 loci, out of which 136 were polymorphic. The genotype SPSG-26 showed the highest number of polymorphic loci, followed by CSSG-668 and HSF-242. Pairwise genetic similarity ranged from 67.2% to 83.3%. The UPGMA cluster analysis resolved most of the accessions in two groups. The clustering pattern did not place all resistant varieties in one or related group which depict diverse resistance source in the present set of sugarcane varieties. Ten primers revealed genotype specific bands among which four primers (K07, H02, K10 and F01) produced multiple genotype specific bands that aid genotype identification especially those with red rot resistance. The present study not only provided information on the genetic diversity among the genotypes but also revealed the potential of RAPD-PCR markers for genotype identification and therefore could be utilized in marker assisted selection for red rot resistance in sugarcane. (author)

Sugarcane transcriptome analysis in response to infection caused by Acidovorax avenae subsp. avenae.

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Ailton B Santa Brigida

Full Text Available Sugarcane is an important tropical crop mainly cultivated to produce ethanol and sugar. Crop productivity is negatively affected by Acidovorax avenae subsp avenae (Aaa, which causes the red stripe disease. Little is known about the molecular mechanisms triggered in response to the infection. We have investigated the molecular mechanism activated in sugarcane using a RNA-seq approach. We have produced a de novo transcriptome assembly (TR7 from sugarcane RNA-seq libraries submitted to drought and infection with Aaa. Together, these libraries present 247 million of raw reads and resulted in 168,767 reference transcripts. Mapping in TR7 of reads obtained from infected libraries, revealed 798 differentially expressed transcripts, of which 723 were annotated, corresponding to 467 genes. GO and KEGG enrichment analysis showed that several metabolic pathways, such as code for proteins response to stress, metabolism of carbohydrates, processes of transcription and translation of proteins, amino acid metabolism and biosynthesis of secondary metabolites were significantly regulated in sugarcane. Differential analysis revealed that genes in the biosynthetic pathways of ET and JA PRRs, oxidative burst genes, NBS-LRR genes, cell wall fortification genes, SAR induced genes and pathogenesis-related genes (PR were upregulated. In addition, 20 genes were validated by RT-qPCR. Together, these data contribute to a better understanding of the molecular mechanisms triggered by the Aaa in sugarcane and opens the opportunity for the development of molecular markers associated with disease tolerance in breeding programs.

Sugarcane transcriptome analysis in response to infection caused by Acidovorax avenae subsp. avenae.

Science.gov (United States)

Santa Brigida, Ailton B; Rojas, Cristian A; Grativol, Clícia; de Armas, Elvismary M; Entenza, Júlio O P; Thiebaut, Flávia; Lima, Marcelo de F; Farrinelli, Laurent; Hemerly, Adriana S; Lifschitz, Sérgio; Ferreira, Paulo C G

2016-01-01

Sugarcane is an important tropical crop mainly cultivated to produce ethanol and sugar. Crop productivity is negatively affected by Acidovorax avenae subsp avenae (Aaa), which causes the red stripe disease. Little is known about the molecular mechanisms triggered in response to the infection. We have investigated the molecular mechanism activated in sugarcane using a RNA-seq approach. We have produced a de novo transcriptome assembly (TR7) from sugarcane RNA-seq libraries submitted to drought and infection with Aaa. Together, these libraries present 247 million of raw reads and resulted in 168,767 reference transcripts. Mapping in TR7 of reads obtained from infected libraries, revealed 798 differentially expressed transcripts, of which 723 were annotated, corresponding to 467 genes. GO and KEGG enrichment analysis showed that several metabolic pathways, such as code for proteins response to stress, metabolism of carbohydrates, processes of transcription and translation of proteins, amino acid metabolism and biosynthesis of secondary metabolites were significantly regulated in sugarcane. Differential analysis revealed that genes in the biosynthetic pathways of ET and JA PRRs, oxidative burst genes, NBS-LRR genes, cell wall fortification genes, SAR induced genes and pathogenesis-related genes (PR) were upregulated. In addition, 20 genes were validated by RT-qPCR. Together, these data contribute to a better understanding of the molecular mechanisms triggered by the Aaa in sugarcane and opens the opportunity for the development of molecular markers associated with disease tolerance in breeding programs.

Influence of the catalyzer in the esterification of the sugarcane bagasse fibers

International Nuclear Information System (INIS)

Maia, Tatiana F.; Mulinari, Daniella R.; Suzuki, Paulo A.

2011-01-01

In this work chemical modification of the sugarcane bagasse fibers by anhydride system using amount Abstract: In this work chemical modification of the sugarcane bagasse fibers by anhydride system using amount different of catalyze was studied. The chemical modification of the fibers was evaluated by techniques of X-Ray Diffractometry (XRD) and Infrared Spectrophotometer (FTIR). Results showed that the amount of catalyze influenced in the chemical modification of the fibers. (author)

TECHNOLOGICAL SCENARIOS TO THE DEMAND FOR SUGARCANE

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Ana Paula Franco Paes Leme Barbosa

2012-06-01

Full Text Available From the first decade of the 2000s, it is clear that there is an increase in discussions involving sustainability, including the bioenergy issue, to which Brazil has drawn the attention due to advances in the ethanol industry. Advances in engine technology reflected new opportunities for this industry and, according to the Ten-Year Energy Plan for 2019 developed by the Ministry of Mines and Energy, there is an expected increase in demand for ethanol of 90% by 2019 (Brazil, 2010. However, new technologies for the conversion and use of sugarcane and the complex context of this industry add uncertainties to this sector. Aiming to discuss and include the uncertainties on the agenda of this industry, this study proposes to elaborate and discuss prospective scenarios to the demand for sugarcane. Four scenarios with different perspectives of technological advance and market development were elaborated and discussed in the conclusion.

Where is sugarcane cropping expanding in the brazilian cerrado, and why? A case study

NARCIS (Netherlands)

Arruda, de M.R.; Giller, K.E.; Slingerland, M.A.

2017-01-01

Sugarcane growing area in Brazil sharply expanded between 2000 and 2010 due to the increasing world demand for sugar and ethanol. Since this expansion of sugarcane is said to occur in areas covered by degraded pastures, it is likely not threatening the environment or food production. In order to

USGS Digital Orthophoto Quad (DOQ) Metadata

Data.gov (United States)

Minnesota Department of Natural Resources — Metadata for the USGS DOQ Orthophoto Layer. Each orthophoto is represented by a Quarter 24k Quad tile polygon. The polygon attributes contain the quarter-quad tile...

Scale insects (Hemiptera: Coccomorpha) on sugarcane in Colombia, with description of a new species of Tillancoccus Ben-Dov (Coccidae).

Science.gov (United States)

Caballero, Alejandro; Ramos-Portilla, Andrea Amalia; Kondo, Takumasa

2017-05-02

Herein we describe a new species, Tillancoccus koreguajae Caballero & Ramos, sp. n. (Hemiptera: Coccidae) from Colombia collected on sugarcane. Pinnaspis strachani (Cooley) is also recorded on sugarcane for the first time worldwide. An updated list of seven species of Coccomorpha on sugarcane in Colombia is provided, including information on its distribution, biology, and mutualistic ants for each species. Seven species of scale insects (Hemiptera: Coccomorpha) have been recorded previously on sugarcane, Saccharum officinarum L. (Poaceae) in Colombia: Pseudococcidae: Dysmicoccus boninsis (Kuwana), D. brevipes (Cockerell), Pseudococcus calceolariae (Maskell), Saccharicoccus sacchari (Cockerell); Coccidae: Pulvinaria elongata Newstead; Diaspididae: Duplachionaspis divergens (Green) and Serenaspis minima (Maskell). However, the record of S. minima in Colombia is considered doubtful as there are no voucher specimens from Colombia and because the distribution of this species is currently limited to the Australasian region. Pseudococcus calceolariae is present in Colombia but its record on sugarcane is also doubtful. A taxonomic key for the identification of scale insects on sugarcane in Colombia is provided.

Vinasse from Sugarcane Ethanol Production: Better Treatment or Better Utilization?

Energy Technology Data Exchange (ETDEWEB)

Rodrigues Reis, Cristiano E.; Hu, Bo, E-mail: bhu@umn.edu [Department of Bioproducts and Biosystems Engineering, University of Minnesota, Saint Paul, MN (United States)

2017-04-10

Ethanol production from sugarcane in Brazil is a well-established industry, with relatively simple operations and high yield. The ethanol primarily serves as a renewable fuel blending with gasoline and diesel to increase the energy security in Brazil. Several environmental concerns are emerged around the by-products from this industry. Vinasse, the liquid fraction generated from the rectification and distillation operations of ethanol, is a sulfur-rich, low pH, dark-colored, and odorous effluent, produced at volumes as high as 20-fold of ethanol. Traditional wastewater treatments, such as bioprocessing, advanced oxidative processes, anaerobic digestion (AD), and chemical-based processes, have been applied to vinasse management. Despite most of its utilization being in fertirrigation practices, vinasse may represent a key factor in enhancing profitability and environmental outcomes of a sugarcane-to-ethanol plant. The application of some upgrade solutions to sugarcane-derived vinasse may represent additional sources of energy, production of animal feed components, and reduction in water consumption within a plant. The use of mature technologies, yet not widespread in the sugarcane-to-ethanol industry, could help attenuate environmental concerns. Oxidation and chemical processes, AD, and microbial fermentation have been presented as alternative impactful alternatives to (i) reduce its organic and mineral load, converting it to a feedstock with fewer environmental applications when applied as fertilizer and (ii) to convert organic matter and nutrients to a nutritious biomass, simultaneously increasing water reclamation potential by plants. This mini-review article provides a critical and comprehensive summary of the alternatives developed or under development to vinasse management.

DESIGN AND PRACTICE ON METADATA SERVICE SYSTEM OF SURVEYING AND MAPPING RESULTS BASED ON GEONETWORK

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Z. Zha

2012-08-01

Full Text Available Based on the analysis and research on the current geographic information sharing and metadata service，we design, develop and deploy a distributed metadata service system based on GeoNetwork covering more than 30 nodes in provincial units of China.. By identifying the advantages of GeoNetwork, we design a distributed metadata service system of national surveying and mapping results. It consists of 31 network nodes, a central node and a portal. Network nodes are the direct system metadata source, and are distributed arround the country. Each network node maintains a metadata service system, responsible for metadata uploading and management. The central node harvests metadata from network nodes using OGC CSW 2.0.2 standard interface. The portal shows all metadata in the central node, provides users with a variety of methods and interface for metadata search or querying. It also provides management capabilities on connecting the central node and the network nodes together. There are defects with GeoNetwork too. Accordingly, we made improvement and optimization on big-amount metadata uploading, synchronization and concurrent access. For metadata uploading and synchronization, by carefully analysis the database and index operation logs, we successfully avoid the performance bottlenecks. And with a batch operation and dynamic memory management solution, data throughput and system performance are significantly improved; For concurrent access, , through a request coding and results cache solution, query performance is greatly improved. To smoothly respond to huge concurrent requests, a web cluster solution is deployed. This paper also gives an experiment analysis and compares the system performance before and after improvement and optimization. Design and practical results have been applied in national metadata service system of surveying and mapping results. It proved that the improved GeoNetwork service architecture can effectively adaptive for

Isolation and characterization of pulp from sugarcane bagasse and rice straw

International Nuclear Information System (INIS)

Saiful Azhari, S.; Suhardy, D.; Kasim, F.H; Nazry Saleh, M.

2007-01-01

The amount of sugarcane bagasse and rice straw in the state of Perlis (Malaysia) is abundant while its utilization is still limited. One of the alternatives for the bagasse and straw utilization is as pulp raw material. This paper reviews on pulp from sugarcane bagasse and rice straw and its suitability for paper production. In this study, the pulp was extracted by the Soxhlet extraction method. The objective of this study was to investigate the cellulose, lignin and silica content of the pulp from sugarcane bagasse and rice straw. For rice straw, the presence of large amount of pentosanes in the pulp and black liquors, which also contain silica were decreased the using of straw in the paper industry. Therefore, formic acid pulping and NaOH treatment are studied to reduce or prevent silica. The isolated pulp samples were further characterized by Scanning Electron Microscope (SEM) to investigate their fiber dimensions. (Author)

AREAS OF ECONOMIC INFLUENCE OF SUGARCANE INDUSTRY IN MATO GROSSO, 2010.

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Wladimir Colman de Azevedo Junior

2015-09-01

Full Text Available The Macroeconomic data reveals the increase of sugarcane chain relevance to Mato Grosso economy, however does not exist studies that evaluate the scope of regional impacts. This research has as the main objective the identification of the territory extension of the sugarcane industry influence in Mato Grosso during 2010, characterizing relationships between industrial plants and the regions where they acting. Was used the gravitational model developed by Isard (1956 to estimate this interrelation commerce patterns of the chain in the state, to find the sugarcane regional centers, as well as, to set up their potential areas of influence. As results has the identification of the 13 cane regions, three cities in first level, seven in the second level and three sub-centers. The relations between this centers and the respective regions has different specifications and their complete understanding allows destination of private investments and public politics. Keywords: Gravitational Model. Cane Sugar Suply Chain. Mato Grosso.

Extraction of CT dose information from DICOM metadata: automated Matlab-based approach.

Science.gov (United States)

Dave, Jaydev K; Gingold, Eric L

2013-01-01

The purpose of this study was to extract exposure parameters and dose-relevant indexes of CT examinations from information embedded in DICOM metadata. DICOM dose report files were identified and retrieved from a PACS. An automated software program was used to extract from these files information from the structured elements in the DICOM metadata relevant to exposure. Extracting information from DICOM metadata eliminated potential errors inherent in techniques based on optical character recognition, yielding 100% accuracy.

MMI's Metadata and Vocabulary Solutions: 10 Years and Growing

Science.gov (United States)

Graybeal, J.; Gayanilo, F.; Rueda-Velasquez, C. A.

2014-12-01

The Marine Metadata Interoperability project (http://marinemetadata.org) held its public opening at AGU's 2004 Fall Meeting. For 10 years since that debut, the MMI guidance and vocabulary sites have served over 100,000 visitors, with 525 community members and continuous Steering Committee leadership. Originally funded by the National Science Foundation, over the years multiple organizations have supported the MMI mission: "Our goal is to support collaborative research in the marine science domain, by simplifying the incredibly complex world of metadata into specific, straightforward guidance. MMI encourages scientists and data managers at all levels to apply good metadata practices from the start of a project, by providing the best guidance and resources for data management, and developing advanced metadata tools and services needed by the community." Now hosted by the Harte Research Institute at Texas A&M University at Corpus Christi, MMI continues to provide guidance and services to the community, and is planning for marine science and technology needs for the next 10 years. In this presentation we will highlight our major accomplishments, describe our recent achievements and imminent goals, and propose a vision for improving marine data interoperability for the next 10 years, including Ontology Registry and Repository (http://mmisw.org/orr) advancements and applications (http://mmisw.org/cfsn).

Biogas Production from Sugarcane Waste: Assessment on Kinetic Challenges for Process Designing

Science.gov (United States)

Janke, Leandro; Leite, Athaydes; Nikolausz, Marcell; Schmidt, Thomas; Liebetrau, Jan; Nelles, Michael; Stinner, Walter

2015-01-01

Biogas production from sugarcane waste has large potential for energy generation, however, to enable the optimization of the anaerobic digestion (AD) process each substrate characteristic should be carefully evaluated. In this study, the kinetic challenges for biogas production from different types of sugarcane waste were assessed. Samples of vinasse, filter cake, bagasse, and straw were analyzed in terms of total and volatile solids, chemical oxygen demand, macronutrients, trace elements, and nutritional value. Biochemical methane potential assays were performed to evaluate the energy potential of the substrates according to different types of sugarcane plants. Methane yields varied considerably (5–181 Nm3·tonFM−1), mainly due to the different substrate characteristics and sugar and/or ethanol production processes. Therefore, for the optimization of AD on a large-scale, continuous stirred-tank reactor with long hydraulic retention times (>35 days) should be used for biogas production from bagasse and straw, coupled with pre-treatment process to enhance the degradation of the fibrous carbohydrates. Biomass immobilization systems are recommended in case vinasse is used as substrate, due to its low solid content, while filter cake could complement the biogas production from vinasse during the sugarcane offseason, providing a higher utilization of the biogas system during the entire year. PMID:26404248

Characterization of typical aquatic humic substances in areas of sugarcane cultivation in Brazil using tetramethylammonium hydroxide thermochemolysis

Energy Technology Data Exchange (ETDEWEB)

Tadini, A.M.; Constantino, I.C. [Departamento de Química e Ciências Ambientais, Instituto de Biociências, Letras e Ciências Exatas, Universidade Estadual Paulista “Júlio de Mesquita Filho”, R. Cristóvão Colombo 2265, 15054-000 São José do Rio Preto, SP (Brazil); Nuzzo, A.; Spaccini, R.; Piccolo, A. [Dipartimento Scienze del Suolo, della Pianta, e dell' Ambiente, Università di Napoli Federico II, Via Università 100, 80055 Portici (Italy); Moreira, A.B. [Departamento de Química e Ciências Ambientais, Instituto de Biociências, Letras e Ciências Exatas, Universidade Estadual Paulista “Júlio de Mesquita Filho”, R. Cristóvão Colombo 2265, 15054-000 São José do Rio Preto, SP (Brazil); and others

2015-06-15

Aquatic humic substances (AHSs) differ from one environment to another depending on land use and occupation. In addition, the effects of planting sugarcane on AHSs are not well known. Thus, the aim of this study was to characterize AHSs extracted from a river in a typical region of sugarcane cultivation during dry and rainy seasons. The main characteristics of the AHSs were obtained using Fourier transformation infrared (FTIR) spectroscopy, nuclear magnetic resonance (NMR) spectroscopy and off-line pyrolysis coupled with gas chromatography and mass spectrometry (off-line tetramethylammonium hydroxide (TMAH)-GC–MS-thermochemolysis). The FTIR and NMR results were used to infer that no distinctions occurred between the sampling periods. The samples were composed of aromatic groups that were potentially associated with the presence of residual vegetable materials (lignin). The results of the off-line TMAH-GC–MS-thermochemolysis indicated that the structures of the AHSs had uniform compositions that were rich in fatty acid methyl esters (FAMEs), polysaccharide derivatives, aliphatic biopolymers derived from plants, long hydrocarbon chains, branched alkyl groups and methylene carbons. Thus, the results showed that the AHSs obtained from the sugarcane cultivation area during the crop period mainly consisted of resistant aliphatic hydrocarbons, which are derivatives of lignin and FAMEs in compounds rich in humic acid. Therefore, we concluded that sugarcane cultivation produces changes in AHSs because greater amounts of lignin derivatives were observed during the dry season, corresponding to sugarcane cultivation. - Highlights: • AHSs differ from one environment to another depending on land use and occupation. • AHSs extracted from a river in a typical region of sugarcane cultivation. • AHSs from the sugarcane area are influenced by the soil use and occupation. • AHSs contain lignin derivatives, fatty acid methyl esters and others. • Lignin was observed with

Advancements in Large-Scale Data/Metadata Management for Scientific Data.

Science.gov (United States)

Guntupally, K.; Devarakonda, R.; Palanisamy, G.; Frame, M. T.

2017-12-01

Scientific data often comes with complex and diverse metadata which are critical for data discovery and users. The Online Metadata Editor (OME) tool, which was developed by an Oak Ridge National Laboratory team, effectively manages diverse scientific datasets across several federal data centers, such as DOE's Atmospheric Radiation Measurement (ARM) Data Center and USGS's Core Science Analytics, Synthesis, and Libraries (CSAS&L) project. This presentation will focus mainly on recent developments and future strategies for refining OME tool within these centers. The ARM OME is a standard based tool (https://www.archive.arm.gov/armome) that allows scientists to create and maintain metadata about their data products. The tool has been improved with new workflows that help metadata coordinators and submitting investigators to submit and review their data more efficiently. The ARM Data Center's newly upgraded Data Discovery Tool (http://www.archive.arm.gov/discovery) uses rich metadata generated by the OME to enable search and discovery of thousands of datasets, while also providing a citation generator and modern order-delivery techniques like Globus (using GridFTP), Dropbox and THREDDS. The Data Discovery Tool also supports incremental indexing, which allows users to find new data as and when they are added. The USGS CSAS&L search catalog employs a custom version of the OME (https://www1.usgs.gov/csas/ome), which has been upgraded with high-level Federal Geographic Data Committee (FGDC) validations and the ability to reserve and mint Digital Object Identifiers (DOIs). The USGS's Science Data Catalog (SDC) (https://data.usgs.gov/datacatalog) allows users to discover a myriad of science data holdings through a web portal. Recent major upgrades to the SDC and ARM Data Discovery Tool include improved harvesting performance and migration using new search software, such as Apache Solr 6.0 for serving up data/metadata to scientific communities. Our presentation will highlight

Health risks due to pre-harvesting sugarcane burning in São Paulo State, Brazil

Directory of Open Access Journals (Sweden)

Maria Leticia de Souza Paraiso

2015-09-01

Full Text Available After 2003, a new period of expansion of the sugarcane culture began in Brazil. Pre-harvesting burning of sugarcane straw is an agricultural practice that, despite the nuisance for the population and pollution generated, still persisted in over 70% of the municipalities of São Paulo State in 2010. In order to study the distribution of this risk factor, an ecological epidemiological study was conducted associating the rates of deaths and hospital admissions for respiratory diseases, for each municipality in the State, with the exposure to the pre-harvesting burning of sugarcane straw. A Bayesian multivariate regression model, controlled for the possible effects of socioeconomic and climate (temperature, humidity, and rainfall variations, has been used. The effect on health was measured by the standardized mortality and morbidity ratio. The measures of exposure to the pre-harvesting burning used were: percentage of the area of sugarcane harvested with burning, average levels of aerosol, and number of outbreaks of burning. The autocorrelation between data was controlled using a neighborhood matrix. It was observed that the increase in the number of outbreaks of burning was significantly associated with higher rates of hospital admissions for respiratory disease in children under five years old. Pre-harvesting burning of sugarcane effectively imposes risk to population health and therefore it should be eliminated.

GENETIC VARIABILITY OF SUGARCANE-ASSOCIATED DIAZOTROPHIC BACTERIA CAPABLE OF INORGANIC PHOSPHATE SOLUBILIZING

OpenAIRE

Lira-Cadete, Luana; Barbosa de Farias, Andreza Raquel; de Souza Ramos, Andresa Priscila; da Costa, Diogo Paes; Freire, Fernando Jose; Kuklinsky-Sobral, Julia

2013-01-01

The sugarcane is a culture of great importance for the Brazilian agriculture. Every year this culture consumes great amounts of nitrogen and phosphate fertilizers. However, the use of plant growth-promoting bacteria can reduce the use of the chemical fertilizers, contributing to the economy and the environment conservation. So, the goal of this study was to select sugarcane-associated diazotrophic bacteria able to solubilize inorganic phosphate and to evaluate the genetic diversity of these b...

Contribution of Root Respiration to Soil Respiration in Sugarcane Plantation in Thailand

OpenAIRE

Wilaiwan Sornpoon; Sebastien Bonnet; Poonpipope Kasemsap; Savitri Garivait

2013-01-01

The understanding on the contribution of root respiration to total soil respiration is still very limited, especially for sugarcane. In this study, trenching experiments in sugarcane plantations were conducted to separate and investigate soil respiration for this crop. The measurements were performed for the whole growing period of 344 days to quantify root respiration. The obtained monitoring data showed that the respiration rate is increasing with the age of the plant, accounting for up to ...

Use of radiation and in vitro techniques for development of salt tolerant mutants in sugarcane and potato

International Nuclear Information System (INIS)

Saif-Ur-Rasheed, M.; Asad, S.; Zafar, Y.; Waheed, R.A.

2001-01-01

Sugarcane and potato are propagated vegetatively and are important crops in Pakistan. Protocols were established to initiate callus and regenerate plants in sugarcane and to multiply potato in- vitro from nodal segments. Cultures of potato and sugarcane were irradiated with 5, 20, 40, and 60 Gy. Increase in radiation dose above 20 Gy reduced regeneration capacity of sugarcane callus. Doses higher than 20 Gy were lethal to micropropagated plants of potato. Culture of irradiated sugarcane callus on media containing salt was tried, but no regeneration was obtained. Variants for tolerance to salinity were selected, and evaluated under saline field conditions at four locations. The study showed that the selected variants of both sugarcane and potato were sensitive to high levels of salinity. Variants tested within the same salinity treatment did not differ significantly from each other in the traits investigated. Only boron uptake in the variants was much higher on saline soil than on the normal soil. Polymorphism was detected among the variants by DNA fingerprinting using randomly amplified polymorphic DNA (RAPD) markers. RAPD analysis showed that most of the variants reverted back to normal type. It is concluded that a large number of variants need be screened to obtain the desired mutants. (author)

ncISO Facilitating Metadata and Scientific Data Discovery

Science.gov (United States)

Neufeld, D.; Habermann, T.

2011-12-01

Increasing the usability and availability climate and oceanographic datasets for environmental research requires improved metadata and tools to rapidly locate and access relevant information for an area of interest. Because of the distributed nature of most environmental geospatial data, a common approach is to use catalog services that support queries on metadata harvested from remote map and data services. A key component to effectively using these catalog services is the availability of high quality metadata associated with the underlying data sets. In this presentation, we examine the use of ncISO, and Geoportal as open source tools that can be used to document and facilitate access to ocean and climate data available from Thematic Realtime Environmental Distributed Data Services (THREDDS) data services. Many atmospheric and oceanographic spatial data sets are stored in the Network Common Data Format (netCDF) and served through the Unidata THREDDS Data Server (TDS). NetCDF and THREDDS are becoming increasingly accepted in both the scientific and geographic research communities as demonstrated by the recent adoption of netCDF as an Open Geospatial Consortium (OGC) standard. One important source for ocean and atmospheric based data sets is NOAA's Unified Access Framework (UAF) which serves over 3000 gridded data sets from across NOAA and NOAA-affiliated partners. Due to the large number of datasets, browsing the data holdings to locate data is impractical. Working with Unidata, we have created a new service for the TDS called "ncISO", which allows automatic generation of ISO 19115-2 metadata from attributes and variables in TDS datasets. The ncISO metadata records can be harvested by catalog services such as ESSI-labs GI-Cat catalog service, and ESRI's Geoportal which supports query through a number of services, including OpenSearch and Catalog Services for the Web (CSW). ESRI's Geoportal Server provides a number of user friendly search capabilities for end users

Evaluation of Loss Resources during Sugarcane Production Process and Provide Solutions to Reduce Waste

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H Zakidizaji

2018-03-01

Full Text Available Introduction No use of advanced mechanization and weakness in post harvesting technology are the main reasons of agricultural losses. Some of these wastes (agricultural losses are related to crop growing conditions in field and the remaining to processing of sugar in mill. The most useful priority setting methods for agricultural projects are the Analytic Hierarchy Process (AHP. So, this study presents an introduction of application manner of the AHP as a mostly common method of setting agricultural projects priorities. The purpose of this work is studying the sugarcane loss during production process using AHP in Khuzestan province. Materials and Methods The resources of sugarcane waste have been defined based on expert’s opinions. A questionnaire and personal interviews have formed the basis of this research. The study was applied to a panel of qualified informants made up of thirty-two experts. Those interviewed were distributed in Sugarcane Development and By-products Company in 2015-2016. Then, with using the analytical hierarchy process, a questionnaire was designed for defining the weight and importance of parameters effecting on sugarcane waste. For this method of evaluation, three main criteria considered, were yield criteria, cost criteria and income criteria. Criteria and prioritizing of them was done by questionnaire and interview with sophisticated experts. This technique determined and ranked the importance of sugarcane waste resources based on attributing relative weights to factors with respect to comments provided in the questionnaires. Analytical Hierarchy Process was done by using of software (Expert choice and the inconsistency rate on expert judgments was investigated. Results and Discussion How to use agricultural implements and machinery during planting and harvesting of sugarcane, can increase or decrease the volume of waste. In planting period, the losses mainly consists of loss of setts during cutting them by machine

Selected Abiotic and Biotic Environmental Stress Factors Affecting Two Economically Important Sugarcane Stalk Boring Pests in the United States

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Allan T. Showler

2016-02-01

Full Text Available Sugarcane, Saccharum spp., in the United States is attacked by a number of different arthropod pests. The most serious among those pests are two stalk boring moths in the Family Crambidae: the sugarcane borer, Diatraea saccharalis (F., and the Mexican rice borer, Eoreuma loftini (Dyar. The two species are affected by abiotic and biotic environmental stress factors. Water deficit and excessive soil nitrogen alter physical and physiochemical aspects of the sugarcane plant that make the crop increasingly vulnerable to E. loftini. Weed growth can be competitive with sugarcane but it also supports enhanced abundances and diversity of natural enemies that can suppress infestations of D. saccharalis. In an instance where the stalk borer is considered a stress factor, proximity of vulnerable crops to sugarcane can influence levels of E. loftini infestation of sugarcane. The adverse effects of each stress factor, in terms of stalk borer attack, can be reduced by adopting appropriate cultural practices, such as adequate irrigation, judicious use of nitrogen fertilizer, using noncompetitive weed growth, and not planting vulnerable crops near sugarcane fields. Understanding the relationships between stress factors and crop pests can provide valuable insights for plant breeders and tools for incorporation into integrated pest management strategies.

Callus induction, regeneration and transformation of sugarcane ...

African Journals Online (AJOL)

Yomi

2012-03-22

Mar 22, 2012 ... 2Department of Agronomy, Faculty of Agriculture, Khon Kaen University, Khonkaen 40002, Thailand. ... The genetic transformation was achieved ..... image processing. Int. J. Eng. Technol. 3(5): 297-301. Nasir NM, Qureshi RH, Aslam M (2000). Effect of salinity on emergence of sugarcane lines. Pak.

Exposure- and flux-based assessment of ozone risk to sugarcane plants

Science.gov (United States)

Moura, Bárbara Baêsso; Hoshika, Yasutomo; Ribeiro, Rafael Vasconcelos; Paoletti, Elena

2018-03-01

Ozone (O3) is a toxic oxidative air pollutant, with significant detrimental effects on crops. Sugarcane (Saccharum spp.) is an important crop with no O3 risk assessment performed so far. This study aimed to assess O3 risk to sugarcane plants by using exposure-based indices (AOT40 and W126) based on O3 concentrations in the air, and the flux-based index (PODy, where y is a threshold of uptake) that considers leaf O3 uptake and the influence of environmental conditions on stomatal conductance (gsto). Two sugarcane genotypes (IACSP94-2094 and IACSP95-5000) were subjected to a 90-day Free-Air Controlled Experiment (FACE) exposure at three levels of O3 concentrations: ambient (Amb); Amb x1.2; and Amb x1.4. Total above-ground biomass (AGB), stalk biomass (SB) and leaf biomass (LB) were evaluated and the potential biomass production in a clean air was estimated by assuming a theoretical clean atmosphere at 10 ppb as 24 h O3 average. The Jarvis-type multiplicative algorithm was used to parametrize gsto including environmental factors i.e. air temperature, light intensity, air vapor pressure deficit, and minimum night-time temperature. Ozone exposure caused a negative impact on AGB, SB and LB. The O3 sensitivity of sugarcane may be related to its high gsto (∼535 mmol H2O m-2 s-1). As sugarcane is adapted to hot climate conditions, gsto was restricted when the current minimum air temperature (Tmin) was below ∼14 °C and the minimum night-time air temperature of the previous day (Tnmin) was below ∼7.5 °C. The flux-based index (PODy) performed better than the exposure-based indices in estimating O3 effect on biomass losses. We recommend a y threshold of 2 nmol m-2 s-1 to incorporate O3 effects on both AGB and SB and 1 nmol m-2 s-1 on LB. In order not to exceed 4% reduction in the growth of these two sugarcane genotypes, we recommend the following critical levels: 1.09 and 1.04 mmol m-2 POD2 for AGB, 0.91 and 0.96 mmol m-2 POD2 for SB, and 3.00 and 2.36 mmol m-2 POD1 for

Fast processing of digital imaging and communications in medicine (DICOM) metadata using multiseries DICOM format

OpenAIRE

Ismail, Mahmoud; Philbin, James

2015-01-01

The digital imaging and communications in medicine (DICOM) information model combines pixel data and its metadata in a single object. There are user scenarios that only need metadata manipulation, such as deidentification and study migration. Most picture archiving and communication system use a database to store and update the metadata rather than updating the raw DICOM files themselves. The multiseries DICOM (MSD) format separates metadata from pixel data and eliminates duplicate attributes...

Improving Earth Science Metadata: Modernizing ncISO

Science.gov (United States)

O'Brien, K.; Schweitzer, R.; Neufeld, D.; Burger, E. F.; Signell, R. P.; Arms, S. C.; Wilcox, K.

2016-12-01

ncISO is a package of tools developed at NOAA's National Center for Environmental Information (NCEI) that facilitates the generation of ISO 19115-2 metadata from NetCDF data sources. The tool currently exists in two iterations: a command line utility and a web-accessible service within the THREDDS Data Server (TDS). Several projects, including NOAA's Unified Access Framework (UAF), depend upon ncISO to generate the ISO-compliant metadata from their data holdings and use the resulting information to populate discovery tools such as NCEI's ESRI Geoportal and NOAA's data.noaa.gov CKAN system. In addition to generating ISO 19115-2 metadata, the tool calculates a rubric score based on how well the dataset follows the Attribute Conventions for Dataset Discovery (ACDD). The result of this rubric calculation, along with information about what has been included and what is missing is displayed in an HTML document generated by the ncISO software package. Recently ncISO has fallen behind in terms of supporting updates to conventions such updates to the ACDD. With the blessing of the original programmer, NOAA's UAF has been working to modernize the ncISO software base. In addition to upgrading ncISO to utilize version1.3 of the ACDD, we have been working with partners at Unidata and IOOS to unify the tool's code base. In essence, we are merging the command line capabilities into the same software that will now be used by the TDS service, allowing easier updates when conventions such as ACDD are updated in the future. In this presentation, we will discuss the work the UAF project has done to support updated conventions within ncISO, as well as describe how the updated tool is helping to improve metadata throughout the earth and ocean sciences.

Functional characterization of sugarcane mustang domesticated transposases and comparative diversity in sugarcane, rice, maize and sorghum

Directory of Open Access Journals (Sweden)

Daniela Kajihara

2012-01-01

Full Text Available Transposable elements (TEs account for a large portion of plant genomes, particularly in grasses, in which they correspond to 50%-80% of the genomic content. TEs have recently been shown to be a source of new genes and new regulatory networks. The most striking contribution of TEs is referred as “molecular domestication”, by which the element coding sequence loses its movement capacity and acquires cellular function. Recently, domesticated transposases known as mustang and derived from the Mutator element have been described in sugarcane. In order to improve our understanding of the function of these proteins, we identified mustang genes from Sorghum bicolor and Zea mays and performed a phenetic analysis to assess the diversity and evolutionary history of this gene family. This analysis identified orthologous groups and showed that mustang genes are highly conserved in grass genomes. We also explored the transcriptional activity of sugarcane mustang genes in heterologous and homologous systems. These genes were found to be ubiquitously transcribed, with shoot apical meristem having the highest expression levels, and were downregulated by phytohormones. Together, these findings suggest the possible involvement of mustang proteins in the maintenance of hormonal homeostasis.

Assessment of chemical and sensory quality of sugarcane alcoholic fermented beverage.

Science.gov (United States)

Resende Oliveira, Érica; Caliari, Márcio; Soares Soares Júnior, Manoel; Ribeiro Oliveira, Aryane; Cristina Marques Duarte, Renata; Valério de Barros Vilas Boas, Eduardo

2018-01-01

This study aimed to verify the technological feasibility, chemical quality and sensory acceptance of alcoholic fermented beverage obtained from sugarcane juice. A completely randomized design was applied. Sugar and alcohol content, phenolic (HPLC-MS) and volatile (GS-MS) compounds, pH, density, dry matter and acidity of the fermented beverage of sugarcane were quantified, as well as the acceptance of the product was carried out. The complete fermentation of sugarcane lasted 7 days, and it was obtained an alcohol content of 8.0% v/v. Titrable acidity of the beverage was of 67.31 meq L -1 , pH 4.03, soluble solids of 5 °Brix, reducing sugar of 0.07 g glucose 100 g -1 , density of 0.991 g cm -3 , reduced dry matter of 14.15 g L -1 , sulfates lower than 0.7 g K 2 SO 4  L -1 . Various phenolic compounds, among which, gallic acid (10.97%), catechin (1.73%), chlorogenic acid (3.52%), caffeic acid (1.49%), vanillic acid (0.28%), p -coumaric acid (0.24%), ferulic acid (6.63%), m -coumaric acid (0.36%), and o -coumaric acid (0.04%). Amongst aromatic compounds, were found mainly esters with fruity aromas (ethyl ester hexanoic acid and ethyl ester octanoic acid). The sugarcane juice can be commercialized as an alternative wine, as it presented adequate features to an alcoholic fermented beverage and was sensory accepted by consumers.

Design, Fabrication and Performance Evaluation of an Inter-Row Cultivator for Sugarcane Fields

Directory of Open Access Journals (Sweden)

Yuttana Khaehanchanpong

2017-09-01

Full Text Available The aims of this research were to design and fabricate an inter-row cultivator for mounting on a medium-sized tractor (25.3 or 37.3 kW for sugarcane fields, and to assess the performance of the cultivator when harvesting is conducted either by hand or with a sugarcane harvester. Moreover, this study was also designed to assess the performance of the cultivator in mixing sugarcane residues in the field. The inter-row cultivator has a working width of 80 cm, a rotor shaft speed of 500 rpm, and a total weight of 518 kg. The cultivator comprises 18 European C-type blades attached to three disk holder flanges arranged in a spiral formation. Two notch-cutting discs were mounted on the front to cut and press the sugarcane leaves before they were chopped and mixed by the inter-row cultivator. The working performance test was conducted for different thicknesses of trash blankets while using the inter-row cultivator mounted on 25.3 kW- and 37.3 kW-size tractors. The effective field capacity for trash incorporation of the inter-row cultivator was 0.30 ha·h−1 when trash was left through harvesting by hand. On the other hand, effective field capacity was 0.31 ha·h−1 when a sugarcane harvester was used. Moreover, the field efficiency exceeded 90% in all tested fields, with greater soil inversion. The results also showed that the fuel consumption of both tractors was higher when harvesting by hand compared with harvesting using a harvester.

Evaluating the bio-energy potential of groundnut shell and sugarcane bagasse waste composite

Directory of Open Access Journals (Sweden)

Olatunde Ajani Oyelaran

2015-12-01

Full Text Available An assessment has been carried out on bio-coal briquettes from coal with sugarcane bagasse and coal with groundnut shell. Proximate analyses and elemental compositions of the coal and biomasses were determined. Different samples of briquettes were produced by blending varying composition of the coal with the biomasses in the ratio of 100:0; 90:10, 80:20, 70:30, 60:40, 50:50, 40:60 and 0: 100, using calcium carbonate as a desulfurizing agent and cassava starch as a binder. A manual hydraulically operated briquetting machine was used with the pressure kept at 5MPa. The results of the properties evaluated shows that biomass increases the burning efficiency of briquettes with increase in the biomass material, increasing combustion rate, faster ignition, producing lesser ash and fewer pollutants. Results obtained shows that the calorific value of briquettes produced from coal-groundnut shells and coal-sugarcane bagasse ranges from 16.94 - 20.81 and 17.31 – 21.03 MJ/kg respectively. The ignition time ranges from 6.9 – 12.5 minutes for coal-groundnut shells briquettes while that of coal-sugarcane bagasse ranges from 6.5 – 11.1 minutes. The bio-coal blends with sugarcane bagasse were better than that of groundnut shells. However, both sugarcane bagasse and groundnut shells produce bio-coal briquettes that are very efficient, providing sufficient heat as at the time necessary, generating less smoke and gases (e.g sulphur that are harmful to environment, and generating less ash, as these have adverse effect during cooking.

Mining the enzymes involved in the detoxification of reactive oxygen species (ROS) in sugarcane.

Science.gov (United States)

Kurama, Eiko E; Fenille, Roseli C; Rosa, Vicente E; Rosa, Daniel D; Ulian, Eugenio C

2002-07-01

Summary Adopting the sequencing of expressed sequence tags (ESTs) of a sugarcane database derived from libraries induced and not induced by pathogens, we identified EST clusters homologous to genes corresponding to enzymes involved in the detoxification of reactive oxygen species. The predicted amino acids of these enzymes are superoxide dismutases (SODs), glutathione-S-transferase (GST), glutathione peroxidase (GPX), and catalases. Three MnSOD mitochondrial precursors and 10 CuZnSOD were identified in sugarcane: the MnSOD mitochondrial precursor is 96% similar to the maize MnSOD mitochondrial precursor and, of the 10 CuZnSOD identified, seven were 98% identical to maize cytosolic CuZnSOD4 and one was 67% identical to putative peroxisomal CuZnSOD from Arabidopsis. Three homologues to class Phi GST were 87-88% identical to GST III from maize. Five GPX homologues were identified: three were homologous to cytosolic GPX from barley, one was 88% identical to phospholipid hydroperoxide glutathione peroxidase (PHGPX) from rice, and the last was 71% identical to GPX from A. thaliana. Three enzymes similar to maize catalase were identified in sugarcane: two were similar to catalase isozyme 3 and catalase chain 3 from maize, which are mitochondrial, and one was similar to catalase isozyme 1 from maize, whose location is peroxisomal subcellular. All enzymes were induced in all sugarcane libraries (flower, seed, root, callus, leaves) and also in the pathogen-induced libraries, except for CuZnSOD whose cDNA was detected in none of the libraries induced by pathogens (Acetobacter diazotroficans and Herbaspirillum rubrisubalbicans). The expression of the enzymes SOD, GST, GPX, and catalases involved in the detoxification was examined using reverse transcriptase-polymerase chain reaction in cDNA from leaves of sugarcane under biotic stress conditions, inoculated with Puccinia melanocephala, the causal agent of sugarcane rust disease.

Integrated production of sugarcane ethanol and soybean biodiesel: Environmental and economic implications of fossil diesel displacement

International Nuclear Information System (INIS)

Souza, Simone P.; Seabra, Joaquim E.A.

2014-01-01

Highlights: • Sugarcane sector is responsible for around 4% of the diesel consumption in Brazil. • Soybean biodiesel can reduce the fossil diesel demand in the sugarcane sector. • The local use of biodiesel could reduce logistic problems and environmental burdens. • The sugarcane–soybean integration is likely to improve ethanol life cycle performance. • Fiscal incentives could reduce the economic uncertainties of the integration. - Abstract: The sugarcane industry in Brazil has been considered promising for the production of advanced fuels and bio-based products. However, the sugarcane crop requires high volumes of fossil fuel for cultivation and transport. The use of biodiesel as a diesel substitute could reduce the environmental burdens associated with this high consumption. This work performed a stochastic evaluation of the environmental and economic implications of the integrated production of sugarcane bioethanol and soybean biodiesel, in comparison with the traditional sugarcane-to-ethanol process. The analysis was focused on the states of Goiás, Mato Grosso and São Paulo, where this integration would be particularly attractive. The environmental aspects addressed were the fossil energy use and the GHG emissions in a cradle-to-gate approach. The economic analysis comprised the evaluation of the net present value of an incremental cash flow generated by the soybean production and by the adjacent plants of oil extraction and biodiesel. Results indicate that the integrated system is likely to improve the ethanol environmental performance, especially with regard to the fossil energy use. The integration is economically feasible but highly uncertain; however, it could be significantly improved through fiscal incentives to biodiesel producers, founded on the reduction of fossil energy use and on improvements in logistics. In addition, the proposed model may also assist in the design of other integrated systems applied to the sugarcane sector in Brazil

Genetic variability among the brown rust resistant and susceptible genotypes of sugarcane by RAPD technique

Science.gov (United States)

Brown leaf rust in sugarcane is caused by Puccinia melanocephala (Syd. & P. Syd.), which is major cause of cultivar withdrawal. We attempted to analyze the RAPD diversity of two discrete phenotypic classes i.e. rust resistant (R) and rust susceptible (S) of six commercially available sugarcane elite...

Alleviation of Salinity Effects by Exogenous Applications of Salicylic Acid in Sugarcane (Saccharum officinarum L. Seedlings

Directory of Open Access Journals (Sweden)

F Chaharlang Badil

2016-12-01

Full Text Available Introduction Abiotic stresses cause 71% reduction in crop yield around the world, from which 20% is related to salinity stress. The importance of sugarcane increases every day due to greater demand for sugar. Since sugarcane has mainly grown in arid and semi-arid regions, salinity is one of the main problems for this crop due to higher evaporation in these areas. Salicylic acid (SA is classified as a phyto – hormone and belongs to a group of phenol compounds. Salicylic acid can improve plant tolerance to abiotic stresses. This research aimed at studying the effect of SA on the alleviating of salinity stress in sugarcane. Materials and Methods The effects of salicylic acid on the growth and some physiological responses of sugarcane (Saccharum officinarum L. cv. CP69-1062 were studied under salt stress. The experiment design was a factorial of two factors, based on a randomized completely design with three replications. The experiment was conducted in a greenhouse at the Sugarcane Research and Training Institute of Khuzestan, Iran in 2012. Treatments evaluated in this study were three levels of salt stress, including (ECW

Improvement of gaseous energy recovery from sugarcane bagasse by dark fermentation followed by biomethanation process.

Science.gov (United States)

Kumari, Sinu; Das, Debabrata

2015-10-01

The aim of the present study was to enhance the gaseous energy recovery from sugarcane bagasse. The two stage (biohydrogen and biomethanation) batch process was considered under mesophilic condition. Alkali pretreatment (ALP) was used to remove lignin from sugarcane bagasse. This enhanced the enzymatic digestibility of bagasse to a great extent. The maximum lignin removal of 60% w/w was achieved at 0.25 N NaOH concentration (50°C, 30 min). The enzymatic hydrolysis efficiency was increased to about 2.6-folds with alkali pretreated sugarcane bagasse as compared to untreated one. The maximum hydrogen and methane yields from the treated sugarcane bagasse by biohydrogen and biomethanation processes were 93.4 mL/g-VS and 221.8 mL/g-VS respectively. This process resulted in significant increase in energy conversion efficiency (44.8%) as compared to single stage hydrogen production process (5.4%). Copyright © 2015 Elsevier Ltd. All rights reserved.

Carcass characteristics of lambs fed spineless cactus as a replacement for sugarcane.

Science.gov (United States)

de Oliveira, Juliana Paula Felipe; de Andrade Ferreira, Marcelo; Alves, Adryanne Marjorie Souza Vitor; de Melo, Ana Caroline Cerqueira; de Andrade, Ida Barbosa; Urbano, Stela Antas; Suassuna, Juraci Marcos Alves; de Barros, Leonardo José Assis; de Barros Melo, Tobias Tobit

2018-04-01

Fresh sugarcane has been a new roughage source for ruminant's in semiarid regions, a function of the decline of sugar and alcohol industry in recent years. However, there is little data published regarding lambs fed sugarcane associated with spineless cactus. This study evaluated the effect of sugarcane replacement with spineless cactus (0%, 33%, 66%, and 100%) in the diet of Santa Inês lambs on carcass characteristics. Thirty-six non-castrated Santa Ines lambs at four months of age and an initial body weight of 22±2.3 kg were assigned in a randomized block design and slaughtered after 70 days of confinement. The effects of spineless cactus as a replacement for sugarcane in the diet of the lambs on the carcass characteristics, commercial cut weight and yield, leg tissue composition, and carcass measurements were studied. The study revealed quadratic behavior in slaughter body weight, and hot and cold carcass weight, with maximum values of 38.60, 18.60, and 18.11 kg and replacement levels of 40.18%, 44.42%, and 43.14%, respectively. The cold carcass yield presented an increasing linear behavior. The compactness index of carcass and leg presented a quadratic effect, with estimated maximal values of 0.28 and 0.57 kg/cm and replacement levels of 43.37% and 45.5%, respectively. The weights of commercial cuts of leg, loin, shoulder, and breast showed quadratic behavior, with maximum values of 2.79, 0.852, 1.46, and 1.30 kg and replacement levels of 49.5, 45.32, 39.0, and 40.7, respectively. For tissue composition, quadratic behavior was verified for leg weight, subcutaneous fat, and total fat. The replacement of sugarcane by spineless cactus at level 44% is recommended for finishing lambs considering that this level improved most of the carcass characteristics, weights, and yields of commercial cuts and leg tissue composition.

Soil and crop residue CO2-C emission under tillage systems in sugarcane-producing areas of southern Brazil

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Luís Gustavo Teixeira

2013-10-01

Full Text Available Appropriate management of agricultural crop residues could result in increases on soil organic carbon (SOC and help to mitigate gas effect. To distinguish the contributions of SOC and sugarcane (Saccharum spp. residues to the short-term CO2-C loss, we studied the influence of several tillage systems: heavy offset disk harrow (HO, chisel plow (CP, rotary tiller (RT, and sugarcane mill tiller (SM in 2008, and CP, RT, SM, moldboard (MP, and subsoiler (SUB in 2009, with and without sugarcane residues relative to no-till (NT in the sugarcane producing region of Brazil. Soil CO2-C emissions were measured daily for two weeks after tillage using portable soil respiration systems. Daily CO2-C emissions declined after tillage regardless of tillage system. In 2008, total CO2-C from SOC and/or residue decomposition was greater for RT and lowest for CP. In 2009, emission was greatest for MP and CP with residues, and smallest for NT. SOC and residue contributed 47 % and 41 %, respectively, to total CO2-C emissions. Regarding the estimated emissions from sugarcane residue and SOC decomposition within the measurement period, CO2-C factor was similar to sugarcane residue and soil organic carbon decomposition, depending on the tillage system applied. Our approach may define new emission factors that are associated to tillage operations on bare or sugarcane-residue-covered soils to estimate the total carbon loss.

Improvements to the Ontology-based Metadata Portal for Unified Semantics (OlyMPUS)

Science.gov (United States)

Linsinbigler, M. A.; Gleason, J. L.; Huffer, E.

2016-12-01

The Ontology-based Metadata Portal for Unified Semantics (OlyMPUS), funded by the NASA Earth Science Technology Office Advanced Information Systems Technology program, is an end-to-end system designed to support Earth Science data consumers and data providers, enabling the latter to register data sets and provision them with the semantically rich metadata that drives the Ontology-Driven Interactive Search Environment for Earth Sciences (ODISEES). OlyMPUS complements the ODISEES' data discovery system with an intelligent tool to enable data producers to auto-generate semantically enhanced metadata and upload it to the metadata repository that drives ODISEES. Like ODISEES, the OlyMPUS metadata provisioning tool leverages robust semantics, a NoSQL database and query engine, an automated reasoning engine that performs first- and second-order deductive inferencing, and uses a controlled vocabulary to support data interoperability and automated analytics. The ODISEES data discovery portal leverages this metadata to provide a seamless data discovery and access experience for data consumers who are interested in comparing and contrasting the multiple Earth science data products available across NASA data centers. Olympus will support scientists' services and tools for performing complex analyses and identifying correlations and non-obvious relationships across all types of Earth System phenomena using the full spectrum of NASA Earth Science data available. By providing an intelligent discovery portal that supplies users - both human users and machines - with detailed information about data products, their contents and their structure, ODISEES will reduce the level of effort required to identify and prepare large volumes of data for analysis. This poster will explain how OlyMPUS leverages deductive reasoning and other technologies to create an integrated environment for generating and exploiting semantically rich metadata.

Predicting age groups of Twitter users based on language and metadata features.

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Antonio A Morgan-Lopez

Full Text Available Health organizations are increasingly using social media, such as Twitter, to disseminate health messages to target audiences. Determining the extent to which the target audience (e.g., age groups was reached is critical to evaluating the impact of social media education campaigns. The main objective of this study was to examine the separate and joint predictive validity of linguistic and metadata features in predicting the age of Twitter users. We created a labeled dataset of Twitter users across different age groups (youth, young adults, adults by collecting publicly available birthday announcement tweets using the Twitter Search application programming interface. We manually reviewed results and, for each age-labeled handle, collected the 200 most recent publicly available tweets and user handles' metadata. The labeled data were split into training and test datasets. We created separate models to examine the predictive validity of language features only, metadata features only, language and metadata features, and words/phrases from another age-validated dataset. We estimated accuracy, precision, recall, and F1 metrics for each model. An L1-regularized logistic regression model was conducted for each age group, and predicted probabilities between the training and test sets were compared for each age group. Cohen's d effect sizes were calculated to examine the relative importance of significant features. Models containing both Tweet language features and metadata features performed the best (74% precision, 74% recall, 74% F1 while the model containing only Twitter metadata features were least accurate (58% precision, 60% recall, and 57% F1 score. Top predictive features included use of terms such as "school" for youth and "college" for young adults. Overall, it was more challenging to predict older adults accurately. These results suggest that examining linguistic and Twitter metadata features to predict youth and young adult Twitter users may

Molecular characterization of soil organic matter from native vegetation–pasture–sugarcane transitions in Brazil

Energy Technology Data Exchange (ETDEWEB)

Oliveira, Dener Márcio da Silva, E-mail: denermsoliveira@gmail.com [University of São Paulo, Luiz de Queiroz College of Agriculture, Department of Soil Science, 11 Páduas Dias Avenue, 13418-900 Piracicaba, SP (Brazil); Colorado State University, Natural Resource Ecology Laboratory, 1231 East Drive, 80523-1499 Fort Collins, CO (United States); Schellekens, Judith; Cerri, Carlos Eduardo Pellegrino [University of São Paulo, Luiz de Queiroz College of Agriculture, Department of Soil Science, 11 Páduas Dias Avenue, 13418-900 Piracicaba, SP (Brazil)

2016-04-01

Replacing pastures (PA) with sugarcane (SG) has been deemed an agronomically feasible strategy for sugarcane expansion in Brazil. However, there are some uncertainties about the environmental impacts regarding this land use change (LUC), mainly related to soil organic matter (SOM), a key factor of environmental sustainability of Brazilian ethanol. LUC-related losses of SOM can overcome the C savings from biofuels. The molecular composition of SOM was evaluated to understand the C dynamics regarding LUC from PA to SG, using native vegetation (NV) as reference. Our study area was located in the south-central region of Brazil. Soil sampling was performed at three depths (0–0.1 m, 0.2–0.3 m and 0.9–1 m) in three representative sites with known LUC history and management practice since 1970. Pyrolysis–gas chromatography/mass spectrometry (Py–GC/MS) was chosen to study SOM chemistry. Content and isotopic composition of soil organic C and N were also determined. The LUC caused decreases on C and N contents and on δ{sup 13}C isotopic values. Depth was the major factor that influenced SOM composition, while the influence of LUC was mainly evident in surface soils and diminished rapidly with depth. The main difference in SOM composition undergoing the conversion PA-SG was a higher contribution from compounds associated to fresh litter inputs. The high contribution from fresh litter, having a relatively low mean residence time and increasing decomposition rates, is probably a major factor that drives C losses in areas undergoing sugarcane expansion. - Graphical abstract: We chose 3 sites in Brazil (1) and collected soil samples in areas undergoing LUC pasture–sugarcane (2) to evaluate SOM composition using Py–GC/MS (3). The LUC causes shifts on SOM signature (4), highlighting the increase of fresh litter compounds in sugarcane areas (5). - Highlights: • Effect of land use change (LUC) on SOM composition in Brazilian soils • Py-GC/MS of NaOH extractable SOM

Potential to expand sustainable bioenergy from sugarcane in southern Africa

International Nuclear Information System (INIS)

Watson, Helen K.

2011-01-01

The Cane Resources Network for Southern Africa evaluated how bioenergy from sugarcane can support sustainable development and improve global competitiveness in the region. The assessment of six countries with good contemporary potential for expanding sugarcane cultivation described in this paper was part of their analysis. Its principal objective was to identify land where such production will not have detrimental environmental and/or socio-economic impacts. Geographic Information Systems (GIS) was used to interrogate 1 km 2 resolution protected area, land cover, climate, elevation and soil data sets. To avoid detrimental impacts on biodiversity, all categories of protected areas, closed canopy forests and wetlands were excluded. To safeguard food security, all areas under food and/or cash crop production were excluded. Areas unsuitable because of climate, terrain and soil constraints were also excluded. The assessment found that almost 6 million hectares of suitable land is available in these countries, clearly suggesting that 'land' is unlikely to be a limiting factor in harnessing sugarcane's bioenergy potential in the region. However, land identified as such in this study needs to be verified using better resolution, preferably ground, information.

Survey of transposable elements in sugarcane expressed sequence tags (ESTs

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Rossi Magdalena

2001-01-01

Full Text Available The sugarcane expressed sequence tag (SUCEST project has produced a large number of cDNA sequences from several plant tissues submitted or not to different conditions of stress. In this paper we report the result of a search for transposable elements (TEs revealing a surprising amount of expressed TEs homologues. Of the 260,781 sequences grouped in 81,223 fragment assembly program (Phrap clusters, a total of 276 clones showed homology to previously reported TEs using a stringent cut-off value of e-50 or better. Homologous clones to Copia/Ty1 and Gypsy/Ty3 groups of long terminal repeat (LTR retrotransposons were found but no non-LTR retroelements were identified. All major transposon families were represented in sugarcane including Activator (Ac, Mutator (MuDR, Suppressor-mutator (En/Spm and Mariner. In order to compare the TE diversity in grasses genomes, we carried out a search for TEs described in sugarcane related species O.sativa, Z. mays and S. bicolor. We also present preliminary results showing the potential use of TEs insertion pattern polymorphism as molecular markers for cultivar identification.

Document Classification in Support of Automated Metadata Extraction Form Heterogeneous Collections

Science.gov (United States)

Flynn, Paul K.

2014-01-01

A number of federal agencies, universities, laboratories, and companies are placing their documents online and making them searchable via metadata fields such as author, title, and publishing organization. To enable this, every document in the collection must be catalogued using the metadata fields. Though time consuming, the task of identifying…

An Assistant for Loading Learning Object Metadata: An Ontology Based Approach

Science.gov (United States)

Casali, Ana; Deco, Claudia; Romano, Agustín; Tomé, Guillermo

2013-01-01

In the last years, the development of different Repositories of Learning Objects has been increased. Users can retrieve these resources for reuse and personalization through searches in web repositories. The importance of high quality metadata is key for a successful retrieval. Learning Objects are described with metadata usually in the standard…

A metadata schema for data objects in clinical research.

Science.gov (United States)

Canham, Steve; Ohmann, Christian

2016-11-24

A large number of stakeholders have accepted the need for greater transparency in clinical research and, in the context of various initiatives and systems, have developed a diverse and expanding number of repositories for storing the data and documents created by clinical studies (collectively known as data objects). To make the best use of such resources, we assert that it is also necessary for stakeholders to agree and deploy a simple, consistent metadata scheme. The relevant data objects and their likely storage are described, and the requirements for metadata to support data sharing in clinical research are identified. Issues concerning persistent identifiers, for both studies and data objects, are explored. A scheme is proposed that is based on the DataCite standard, with extensions to cover the needs of clinical researchers, specifically to provide (a) study identification data, including links to clinical trial registries; (b) data object characteristics and identifiers; and (c) data covering location, ownership and access to the data object. The components of the metadata scheme are described. The metadata schema is proposed as a natural extension of a widely agreed standard to fill a gap not tackled by other standards related to clinical research (e.g., Clinical Data Interchange Standards Consortium, Biomedical Research Integrated Domain Group). The proposal could be integrated with, but is not dependent on, other moves to better structure data in clinical research.

Metadata-Driven SOA-Based Application for Facilitation of Real-Time Data Warehousing

Science.gov (United States)

Pintar, Damir; Vranić, Mihaela; Skočir, Zoran

Service-oriented architecture (SOA) has already been widely recognized as an effective paradigm for achieving integration of diverse information systems. SOA-based applications can cross boundaries of platforms, operation systems and proprietary data standards, commonly through the usage of Web Services technology. On the other side, metadata is also commonly referred to as a potential integration tool given the fact that standardized metadata objects can provide useful information about specifics of unknown information systems with which one has interest in communicating with, using an approach commonly called "model-based integration". This paper presents the result of research regarding possible synergy between those two integration facilitators. This is accomplished with a vertical example of a metadata-driven SOA-based business process that provides ETL (Extraction, Transformation and Loading) and metadata services to a data warehousing system in need of a real-time ETL support.

Ontology-based Metadata Portal for Unified Semantics

Data.gov (United States)

National Aeronautics and Space Administration — The Ontology-based Metadata Portal for Unified Semantics (OlyMPUS) will extend the prototype Ontology-Driven Interactive Search Environment for Earth Sciences...

Cultivar Evaluation and Essential Test Locations Identification for Sugarcane Breeding in China

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Jun Luo

2014-01-01

Full Text Available The discrepancies across test sites and years, along with the interaction between cultivar and environment, make it difficult to accurately evaluate the differences of the sugarcane cultivars. Using a genotype main effect plus genotype-environment interaction (GGE Biplot software, the yield performance data of seven sugarcane cultivars in the 8th Chinese National Sugarcane Regional Tests were analyzed to identify cultivars recommended for commercial release. Fn38 produced a high and stable sugar yield. Gn02-70 had the lowest cane yield with high stability. Yz06-407 was a high cane yield cultivar with poor stability in sugar yield. Yz05-51 and Lc03-1137 had an unstable cane yield but relatively high sugar yield. Fn39 produced stable high sugar yield with low and unstable cane production. Significantly different sugar and cane yields were observed across seasons due to strong cultivar-environment interactions. Three areas, Guangxi Chongzuo, Guangxi Baise, and Guangxi Hechi, showed better representativeness of cane yield and sugar content than the other four areas. On the other hand, the areas Guangxi Chongzuo, Yunnan Lincang, and Yunnan Baoshan showed strong discrimination ability, while the areas Guangxi Hechi and Guangxi Liuzhou showed poor discrimination ability. This study provides a reference for cultivar evaluation and essential test locations identification for sugarcane breeding in China.

Increased sink strength offsets the inhibitory effect of sucrose on sugarcane photosynthesis.

Science.gov (United States)

Ribeiro, Rafael V; Machado, Eduardo C; Magalhães Filho, José R; Lobo, Ana Karla M; Martins, Márcio O; Silveira, Joaquim A G; Yin, Xinyou; Struik, Paul C

2017-01-01

Spraying sucrose inhibits photosynthesis by impairing Rubisco activity and stomatal conductance (g s ), whereas increasing sink demand by partially darkening the plant stimulates sugarcane photosynthesis. We hypothesized that the stimulatory effect of darkness can offset the inhibitory effect of exogenous sucrose on photosynthesis. Source-sink relationship was perturbed in two sugarcane cultivars by imposing partial darkness, spraying a sucrose solution (50mM) and their combination. Five days after the onset of the treatments, the maximum Rubisco carboxylation rate (V cmax ) and the initial slope of A-C i curve (k) were estimated by measuring leaf gas exchange and chlorophyll fluorescence. Photosynthesis was inhibited by sucrose spraying in both genotypes, through decreases in V cmax , k, g s and ATP production driven by electron transport (J atp ). Photosynthesis of plants subjected to the combination of partial darkness and sucrose spraying was similar to photosynthesis of reference plants for both genotypes. Significant increases in V cmax , g s and J atp and marginal increases in k were noticed when combining partial darkness and sucrose spraying compared with sucrose spraying alone. Our data also revealed that increases in sink strength due to partial darkness offset the inhibition of sugarcane photosynthesis caused by sucrose spraying, enhancing the knowledge on endogenous regulation of sugarcane photosynthesis through the source-sink relationship. Copyright © 2016 Elsevier GmbH. All rights reserved.

Anaerobic biodigestion of sugarcane vinasse under mesophilic conditions using manure as inoculum

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Carlos Eduardo de Farias Silva

2016-11-01

Full Text Available Sugarcane vinasse is one of the most polluting residues produced by Brazilian ethanol industries, mainly because of its harmful effects on the environmental, such as high organic matter load and acidity. Anaerobic digestion is a highly efficient wastewater treatment method that could potentially be used to treat sugarcane vinasse. This study examined the anaerobic biodigestion of sugarcane vinasse in mesophilic conditions (30 - 45°C by varying the inoculum concentration (0.5 to 5.5% and pH (6 - 8. Changes of Chemical Oxygen Demand (COD, total solids content, and yield and composition of biogas after the biodigestion of the vinasse were assessed. The vinasse was efficiently digested under mesophilic anaerobic conditions over a 23-day Hydraulic Retention Time (HRT and a 5-day acidogenic phase with a consequent reduction of COD (54 - 83% and total solids (52 - 87%. Statistical analyses at a confidence level of 95% suggested that temperature, pH and inoculum concentration did not influence on the anaerobic biodigestion of the vinasse. The optimal operating parameters were found to be temperatures of 30 - 35°C, inoculum concentration of 0.5% and pH of 6 - 7. The results emphasize the promising use of the treated sugarcane vinasse as a biofertilizer for agriculture, indicating that the anaerobic digestion process is an excellent alternative for Brazilian ethanol industries.

Utilisation of sugarcane trash and other cellulosic wastes for production of oxalic acid

Energy Technology Data Exchange (ETDEWEB)

Mane, J D; Modak, H M; Ramaiah, N A; Jadhav, S J

1988-01-01

The nitric acid oxidation process was developed for the production of oxalic acid from sugarcane trash, groundnut shells, corn cobs and rice husks. Good yields of oxalic acid from the above raw materials were obtained under optimum conditions, with sugarcane trash as the preferable raw material. The absorption of waste nitrogen oxide gases in aqueous NaOH to get a valuable by-product, sodium nitrite, was also successful.

A New Proposal Of Cellulosic Ethanol To Boost Sugarcane Biorefineries: Techno-economic Evaluation

OpenAIRE

Albarelli J.Q.; Ensinas A.V.; Silva M.A.

2014-01-01

Commercial simulator Aspen Plus was used to simulate a biorefinery producing ethanol from sugarcane juice and second generation ethanol production using bagasse fine fraction composed of parenchyma cells (P-fraction). Liquid hot water and steam explosion pretreatment technologies were evaluated. The processes were thermal and water integrated and compared to a biorefinery producing ethanol from juice and sugarcane bagasse. The results indicated that after thermal and water integration, the ev...

Antioxidant enzymes activity in embryogenic and non-embryogenic tissues in Sugarcane

International Nuclear Information System (INIS)

Marina Medeiros de Araujo Silva; Ulisses, Claudia; Lacerda E Medeiros, Maria Jaislanny; Cavalcante Granja, Manuela Maria; Willadino, Lilia; Camara, Terezinha

2014-01-01

The objective of this work was to induce direct somatic embryogenesis from segments of immature leaves of the RB872552 variety of sugarcane and to correlate this morphogenic event with oxidative stress. Two previously described protocols were utilized for the induction of somatic embryogenesis in sugarcane with different supplementations of the culture medium and different incubation conditions. For the conversion of embryos into plants was used ms medium without phytoregulators. Histological analyses and activity of antioxidant enzymes were also conducted for the embryogenic and non-embryogenic tissues. The formation of somatic embryos was obtained in 81 % of the explants with the combination of regulators 2,4-D (2,4-dichlorophenoxyacetic acid)and BAP (6-benzylaminopurine) when incubated under 16 h photoperiod. With regards to the antioxidant enzymes, there was increased activity of peroxidase and an increase in the soluble protein content in embryogenic tissues, whereas lower activities of polyphenol oxidase and catalase appeared in these tissues compared to nonembryogenic tissues. It could be inferred that oxidative stress plays an important role in the induction of somatic embryogenesis in sugarcane.

Water stress indices for the sugarcane crop on different irrigated surfaces

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Rodrigo G. Brunini

Full Text Available ABSTRACT Sugarcane (Saccharum officinarum L. is a crop of vital importance to Brazil, in the production of sugar and ethanol, power generation and raw materials for various purposes. Strategic information such as topography and canopy temperature can provide management technologies accessible to farmers. The objective of this study was to determine water stress indices for sugarcane in irrigated areas, with different exposures and slopes. The daily water stress index of the plants and the water potential in the soil were evaluated and the production system was analyzed. The experiment was carried out in an “Experimental Watershed”, using six surfaces, two horizontal and the other ones with 20 and 40% North and South exposure slopes. Water stress level was determined by measuring the temperatures of the vegetation cover and the ambient air. Watering was carried out using a drip irrigation system. The results showed that water stress index of sugarcane varies according to exposure and slope of the terrain, while areas whose water stress index was above 5.0 oC had lower yield values.

Radiological dose and metadata management

International Nuclear Information System (INIS)

Walz, M.; Madsack, B.; Kolodziej, M.

2016-01-01

This article describes the features of management systems currently available in Germany for extraction, registration and evaluation of metadata from radiological examinations, particularly in the digital imaging and communications in medicine (DICOM) environment. In addition, the probable relevant developments in this area concerning radiation protection legislation, terminology, standardization and information technology are presented. (orig.) [de

Pathogen toxin-indiced electrolyte leakage and phytoalexin accumulation as indices of red-rot (Colletotrichum falcatum Went resistance in sugarcane

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D. Mohanraj

2003-08-01

Full Text Available A phytotoxin produced by the sugarcane red-rot fungus Colletotrichum falcatum Went was partially purified. The phytotoxin caused increased electrolyte leakage in susceptible sugarcane varieties and higher levels of phytoalexins (3-deoxyanthocyanidins in resistant sugarcane varieties. This relationship between phytotoxin induced changes and disease reaction could possibly be used as an additional index to rapidly identify red-rot resistant varieties.

Liming in the sugarcane burnt system and the green harvest practice affect soil bacterial community in northeastern São Paulo, Brazil.

Science.gov (United States)

Val-Moraes, Silvana Pompeia; de Macedo, Helena Suleiman; Kishi, Luciano Takeshi; Pereira, Rodrigo Matheus; Navarrete, Acacio Aparecido; Mendes, Lucas William; de Figueiredo, Eduardo Barretto; La Scala, Newton; Tsai, Siu Mui; de Macedo Lemos, Eliana Gertrudes; Alves, Lúcia Maria Carareto

2016-12-01

Here we show that both liming the burnt sugarcane and the green harvest practice alter bacterial community structure, diversity and composition in sugarcane fields in northeastern São Paulo state, Brazil. Terminal restriction fragment length polymorphism fingerprinting and 16S rRNA gene cloning and sequencing were used to analyze changes in soil bacterial communities. The field experiment consisted of sugarcane-cultivated soils under different regimes: green sugarcane (GS), burnt sugarcane (BS), BS in soil amended with lime applied to increase soil pH (BSL), and native forest (NF) as control soil. The bacterial community structures revealed disparate patterns in sugarcane-cultivated soils and forest soil (R = 0.786, P = 0.002), and overlapping patterns were shown for the bacterial community structure among the different management regimes applied to sugarcane (R = 0.194, P = 0.002). The numbers of operational taxonomic units (OTUs) found in the libraries were 117, 185, 173 and 166 for NF, BS, BSL and GS, respectively. Sugarcane-cultivated soils revealed higher bacterial diversity than NF soil, with BS soil accounting for a higher richness of unique OTUs (101 unique OTUs) than NF soil (23 unique OTUs). Cluster analysis based on OTUs revealed similar bacterial communities in NF and GS soils, while the bacterial community from BS soil was most distinct from the others. Acidobacteria and Alphaproteobacteria were the most abundant bacterial phyla across the different soils with Acidobacteria Gp1 accounting for a higher abundance in NF and GS soils than burnt sugarcane-cultivated soils (BS and BSL). In turn, Acidobacteria Gp4 abundance was higher in BS soils than in other soils. These differential responses in soil bacterial community structure, diversity and composition can be associated with the agricultural management, mainly liming practices, and harvest methods in the sugarcane-cultivated soils, and they can be detected shortly after harvest.

Meta-Data Objects as the Basis for System Evolution

CERN Document Server

Estrella, Florida; Tóth, N; Kovács, Z; Le Goff, J M; Clatchey, Richard Mc; Toth, Norbert; Kovacs, Zsolt; Goff, Jean-Marie Le

2001-01-01

One of the main factors driving object-oriented software development in the Web- age is the need for systems to evolve as user requirements change. A crucial factor in the creation of adaptable systems dealing with changing requirements is the suitability of the underlying technology in allowing the evolution of the system. A reflective system utilizes an open architecture where implicit system aspects are reified to become explicit first-class (meta-data) objects. These implicit system aspects are often fundamental structures which are inaccessible and immutable, and their reification as meta-data objects can serve as the basis for changes and extensions to the system, making it self- describing. To address the evolvability issue, this paper proposes a reflective architecture based on two orthogonal abstractions - model abstraction and information abstraction. In this architecture the modeling abstractions allow for the separation of the description meta-data from the system aspects they represent so that th...

Florescimento em cana-de-açúcar Flowering in sugarcane

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Rosilaine Araldi

2010-03-01

Full Text Available O florescimento da cana-de-açúcar é um processo fisiológico complexo formado por vários estádios de desenvolvimento, e cada estádio tem a sua própria necessidade ambiental e fisiológica. Os fatores externos relacionados com o florescimento são: fotoperíodo, temperatura, umidade e radiação solar, além da fertilidade do solo. Por outro lado, os fatores internos envolvem fitocromo, hormônios, florígeno, ácidos nucleicos, dentre outros. A intensidade do processo de florescimento e as consequências na qualidade da cana-de-açúcar variam com a variedade e com o clima. A redução do volume de caldo é o principal fator no qual o florescimento interfere, resultante do aumento do teor de fibras. Como as demais Poaceae, a cana-de-açúcar floresce, frutifica e morre, garantindo a perpetuação da espécie. Dessa forma, o homem procura interferir na natureza tentando evitar o florescimento da cana-de-açúcar, seja por meio de melhoramento genético ou por meio de reguladores vegetais. Em áreas comerciais de produção de cana-de-açúcar, onde há condições ideais para o florescimento da cultura, é recomendado o uso de variedade com potencial menos florífero. E, quando não é possível esse manejo varietal, o uso de inibidores do florescimento é a melhor alternativa para evitar mais perdas no conteúdo de sacarose.The sugarcane flowering is a complex physiological process that consists of several stages of development, each stage has its physiological and environmental requisition. The external factors related to flowering are: photoperiod, temperature, humidity, solar radiation in addition to soil fertility. Already the internal factors involved are: phytochrome, hormones, florigene, nucleic acids, among others. The intensity of the flowering and the consequences on the quality of sugarcane vary with the variety and the climate. The reduction of the sugarcane juice is the main factor which affected by the flowering, resulting

Plant growth inhibitors isolated from sugarcane (Saccharum officinarum) straw.

Science.gov (United States)

Sampietro, Diego Alejandro; Vattuone, Marta Amelia; Isla, María Ines

2006-07-01

Several compounds related with plant defense and pharmacological activities have been isolated from sugarcane. Straw phytotoxins and their possible mechanisms of growth inhibition are largely unknown. A bioassay-guided fractionation of the phytotoxic constituents leachated from a sugarcane straw led to the isolation of trans-ferulic (trans-FA), cis-ferulic (cis-FA), vanillic (VA) and syringic (SA) acids. The straw leachates and their identified constituents significantly inhibited root growth of lettuce and four weeds. VA was more phytotoxic to root elongation than FA and SA. The identified phenolic compounds significantly increased leakage of root cell constituents, inhibited dehydrogenase activity and reduced chlorophyll content in lettuce. VA and FA inhibited mitotic index while SA increased cell division. Additive (VA-FA and FA-SA) and synergistic (VA-SA) interactions on root growth were observed at the response level of EC(25). Although the isolated compounds differed in their relative phytotoxic activities, the observed physiological responses suggest that they have a common mode of action. HPLC analysis indicated that sugarcane straw can potentially release 1.43 (ratio 2:1, trans:cis), 1.14 and 0.14mmolkg(-1) (straw dry weight) of FA, VA and SA, respectively. As phenolic acids are often found spatially concentrated in the top soil layers under plant straws, further studies are needed to establish the impact of these compounds in natural settings.

Batch metadata assignment to archival photograph collections using facial recognition software

Directory of Open Access Journals (Sweden)

Kyle Banerjee

2013-07-01

Full Text Available Useful metadata is essential to giving individual meaning and value within the context of a greater image collection as well as making them more discoverable. However, often little information is available about the photos themselves, so adding consistent metadata to large collections of digital and digitized photographs is a time consuming process requiring highly experienced staff. By using facial recognition software, staff can identify individuals more quickly and reliably. Knowledge of individuals in photos helps staff determine when and where photos are taken and also improves understanding of the subject matter. This article demonstrates simple techniques for using facial recognition software and command line tools to assign, modify, and read metadata for large archival photograph collections.

The sugarcane defense protein SUGARWIN2 causes cell death in Colletotrichum falcatum but not in non-pathogenic fungi.

Directory of Open Access Journals (Sweden)

Flávia P Franco

Full Text Available Plants respond to pathogens and insect attacks by inducing and accumulating a large set of defense-related proteins. Two homologues of a barley wound-inducible protein (BARWIN have been characterized in sugarcane, SUGARWIN1 and SUGARWIN2 (sugarcane wound-inducible proteins. Induction of SUGARWINs occurs in response to Diatraea saccharalis damage but not to pathogen infection. In addition, the protein itself does not show any effect on insect development; instead, it has antimicrobial activities toward Fusarium verticillioides, an opportunistic fungus that usually occurs after D. saccharalis borer attacks on sugarcane. In this study, we sought to evaluate the specificity of SUGARWIN2 to better understand its mechanism of action against phytopathogens and the associations between fungi and insects that affect plants. We used Colletotrichum falcatum, a fungus that causes red rot disease in sugarcane fields infested by D. saccharalis, and Ceratocystis paradoxa, which causes pineapple disease in sugarcane. We also tested whether SUGARWIN2 is able to cause cell death in Aspergillus nidulans, a fungus that does not infect sugarcane, and in the model yeast Saccharomyces cerevisiae, which is used for bioethanol production. Recombinant SUGARWIN2 altered C. falcatum morphology by increasing vacuolization, points of fractures and a leak of intracellular material, leading to germling apoptosis. In C. paradoxa, SUGARWIN2 showed increased vacuolization in hyphae but did not kill the fungi. Neither the non-pathogenic fungus A. nidulans nor the yeast S. cerevisiae was affected by recombinant SUGARWIN2, suggesting that the protein is specific to sugarcane opportunistic fungal pathogens.

Selection and evaluation of reference genes for RT-qPCR expression studies on Burkholderia tropica strain Ppe8, a sugarcane-associated diazotrophic bacterium grown with different carbon sources or sugarcane juice.

Science.gov (United States)

da Silva, Paula Renata Alves; Vidal, Marcia Soares; de Paula Soares, Cleiton; Polese, Valéria; Simões-Araújo, Jean Luís; Baldani, José Ivo

2016-11-01

Among the members of the genus Burkholderia, Burkholderia tropica has the ability to fix nitrogen and promote sugarcane plant growth as well as act as a biological control agent. There is little information about how this bacterium metabolizes carbohydrates as well as those carbon sources found in the sugarcane juice that accumulates in stems during plant growth. Reverse transcription quantitative PCR (RT-qPCR) can be used to evaluate changes in gene expression during bacterial growth on different carbon sources. Here we tested the expression of six reference genes, lpxC, gyrB, recA, rpoA, rpoB, and rpoD, when cells were grown with glucose, fructose, sucrose, mannitol, aconitic acid, and sugarcane juice as carbon sources. The lpxC, gyrB, and recA were selected as the most stable reference genes based on geNorm and NormFinder software analyses. Validation of these three reference genes during strain Ppe8 growth on the same carbon sources showed that genes involved in glycogen biosynthesis (glgA, glgB, glgC) and trehalose biosynthesis (treY and treZ) were highly expressed when Ppe8 was grown in aconitic acid relative to other carbon sources, while otsA expression (trehalose biosynthesis) was reduced with all carbon sources. In addition, the expression level of the ORF_6066 (gluconolactonase) gene was reduced on sugarcane juice. The results confirmed the stability of the three selected reference genes (lpxC, gyrB, and recA) during the RT-qPCR and also their robustness by evaluating the relative expression of genes involved in glycogen and trehalose biosynthesis when strain Ppe8 was grown on different carbon sources and sugarcane juice.

NCPP's Use of Standard Metadata to Promote Open and Transparent Climate Modeling

Science.gov (United States)

Treshansky, A.; Barsugli, J. J.; Guentchev, G.; Rood, R. B.; DeLuca, C.

2012-12-01

The National Climate Predictions and Projections (NCPP) Platform is developing comprehensive regional and local information about the evolving climate to inform decision making and adaptation planning. This includes both creating and providing tools to create metadata about the models and processes used to create its derived data products. NCPP is using the Common Information Model (CIM), an ontology developed by a broad set of international partners in climate research, as its metadata language. This use of a standard ensures interoperability within the climate community as well as permitting access to the ecosystem of tools and services emerging alongside the CIM. The CIM itself is divided into a general-purpose (UML & XML) schema which structures metadata documents, and a project or community-specific (XML) Controlled Vocabulary (CV) which constraints the content of metadata documents. NCPP has already modified the CIM Schema to accommodate downscaling models, simulations, and experiments. NCPP is currently developing a CV for use by the downscaling community. Incorporating downscaling into the CIM will lead to several benefits: easy access to the existing CIM Documents describing CMIP5 models and simulations that are being downscaled, access to software tools that have been developed in order to search, manipulate, and visualize CIM metadata, and coordination with national and international efforts such as ES-DOC that are working to make climate model descriptions and datasets interoperable. Providing detailed metadata descriptions which include the full provenance of derived data products will contribute to making that data (and, the models and processes which generated that data) more open and transparent to the user community.

Radiometric relations of a sugarcane crop

International Nuclear Information System (INIS)

Machado, E.C.; Pereira, A.R.; Camargo, M.B.P. de; Fahl, J.I.

1985-01-01

The radiometric relations of a sugarcane crop, cv. NA56-79, are studied during the period of maximum leaf area index. The coefficients of reflection, transmission and absorption of the incoming solar radiation were function of solar elevation and the waveband considered. The photosynthetically active radiation was always less reflected and transmitted but more absorved than the near infrared radiation. (M.A.C.) [pt

Data catalog project—A browsable, searchable, metadata system

International Nuclear Information System (INIS)

Stillerman, Joshua; Fredian, Thomas; Greenwald, Martin; Manduchi, Gabriele

2016-01-01

Modern experiments are typically conducted by large, extended groups, where researchers rely on other team members to produce much of the data they use. The experiments record very large numbers of measurements that can be difficult for users to find, access and understand. We are developing a system for users to annotate their data products with structured metadata, providing data consumers with a discoverable, browsable data index. Machine understandable metadata captures the underlying semantics of the recorded data, which can then be consumed by both programs, and interactively by users. Collaborators can use these metadata to select and understand recorded measurements. The data catalog project is a data dictionary and index which enables users to record general descriptive metadata, use cases and rendering information as well as providing them a transparent data access mechanism (URI). Users describe their diagnostic including references, text descriptions, units, labels, example data instances, author contact information and data access URIs. The list of possible attribute labels is extensible, but limiting the vocabulary of names increases the utility of the system. The data catalog is focused on the data products and complements process-based systems like the Metadata Ontology Provenance project [Greenwald, 2012; Schissel, 2015]. This system can be coupled with MDSplus to provide a simple platform for data driven display and analysis programs. Sites which use MDSplus can describe tree branches, and if desired create ‘processed data trees’ with homogeneous node structures for measurements. Sites not currently using MDSplus can either use the database to reference local data stores, or construct an MDSplus tree whose leaves reference the local data store. A data catalog system can provide a useful roadmap of data acquired from experiments or simulations making it easier for researchers to find and access important data and understand the meaning of the

Data catalog project—A browsable, searchable, metadata system

Energy Technology Data Exchange (ETDEWEB)

Stillerman, Joshua, E-mail: jas@psfc.mit.edu [MIT Plasma Science and Fusion Center, Cambridge, MA (United States); Fredian, Thomas; Greenwald, Martin [MIT Plasma Science and Fusion Center, Cambridge, MA (United States); Manduchi, Gabriele [Consorzio RFX, Euratom-ENEA Association, Corso Stati Uniti 4, Padova 35127 (Italy)

2016-11-15

Modern experiments are typically conducted by large, extended groups, where researchers rely on other team members to produce much of the data they use. The experiments record very large numbers of measurements that can be difficult for users to find, access and understand. We are developing a system for users to annotate their data products with structured metadata, providing data consumers with a discoverable, browsable data index. Machine understandable metadata captures the underlying semantics of the recorded data, which can then be consumed by both programs, and interactively by users. Collaborators can use these metadata to select and understand recorded measurements. The data catalog project is a data dictionary and index which enables users to record general descriptive metadata, use cases and rendering information as well as providing them a transparent data access mechanism (URI). Users describe their diagnostic including references, text descriptions, units, labels, example data instances, author contact information and data access URIs. The list of possible attribute labels is extensible, but limiting the vocabulary of names increases the utility of the system. The data catalog is focused on the data products and complements process-based systems like the Metadata Ontology Provenance project [Greenwald, 2012; Schissel, 2015]. This system can be coupled with MDSplus to provide a simple platform for data driven display and analysis programs. Sites which use MDSplus can describe tree branches, and if desired create ‘processed data trees’ with homogeneous node structures for measurements. Sites not currently using MDSplus can either use the database to reference local data stores, or construct an MDSplus tree whose leaves reference the local data store. A data catalog system can provide a useful roadmap of data acquired from experiments or simulations making it easier for researchers to find and access important data and understand the meaning of the

Direct saponification preparation and analysis of free and conjugated phytosterols in sugarcane (Saccharum officinarum L.) by reversed-phase high-performance liquid chromatography.

Science.gov (United States)

Feng, Simin; Liu, Songbai; Luo, Zisheng; Tang, Kaichen

2015-08-15

A simple method based on direct saponification followed by RP-HPLC analysis was developed for quantification of free and conjugated sterols in sugarcane. Acid hydrolysis prior to alkaline saponification was used to determined acylated steryl glycoside and steryl glycoside in sugarcane. The applicability and generality of this method were improved with intensive investigation. Compared to traditional solvent extraction method, this method was more time saving and appropriate for characterization of sterol fractions in sugarcane. This method was successfully applied for determination of free and conjugated sterols in different sugarcane samples. The results exhibited that stigmasterol (varied from 883.3 ± 23.5 to 1823.9 ± 24.5 μg/g dry weigh) and β-sitosterol (varied from 117.6 ± 19.9 to 801.4 ± 33.5 μg/g dry weight) were major phytosterols in the sugarcane sample, and their glycosylated forms accounted for almost 87.0% of stigmasterol and 87.5% of β-sitosterol in sugarcane, respectively. In addition, among other parts of sugarcane, tips contained the greatest amount of phytosterols. Copyright © 2015 Elsevier Ltd. All rights reserved.

Endophytic nitrogen fixation in sugarcane: Present knowledge and future applications

International Nuclear Information System (INIS)

Boddey, Robert M.; Urquiaga, Segundo; Alves, Bruno J.R.; Reis, Veronica

2001-01-01

In Brazil the long-term continuous cultivation of sugarcane with low N fertiliser inputs, without apparent depletion of soil-N reserves, led to the suggestion that N 2 -fixing bacteria associated with the plants may be the source of agronomically significant N inputs to this crop. From the 1950s to 1970s, considerable numbers of N 2 -fixing bacteria were found to be associated with the crop, but it was not until the late 1980s that evidence from N balance and 15 N dilution experiments showed that some Brazilian varieties of sugarcane were able to obtain significant contributions from this source. The results of these studies renewed the efforts to search for N 2 -fixing bacteria, but this time the emphasis was on those diazotrophs that infected the interior of the plants. Within a few years several species of such 'endophytic diazotrophs' were discovered including Gluconacetobacter diazotrophicus, Herbaspirillum seropedicae, H. rubrisubalbicans and Burkholderia sp. Work has continued on these endophytes within sugarcane plants, but to date little success has been attained in elucidating which endophyte is responsible for the observed BNF and in what site, or sites, within the cane plants the N 2 fixation mainly occurs. Until such important questions are answered further developments or extension of this novel N 2 -fixing system to other economically important non-legumes (e.g. cereals) will be seriously hindered. As far as application of present knowledge to maximise BNF with sugarcane is concerned, molybdenum is an essential micronutrient. An abundant water supply favours high BNF inputs, and the best medium term strategy to increase BNF would appear to be based on cultivar selection on irrigated N deficient soils fertilised with Mo. (author)

Sweet attraction: sugarcane pollen-associated volatiles attract gravid Anopheles arabiensis.

Science.gov (United States)

Wondwosen, Betelehem; Birgersson, Göran; Tekie, Habte; Torto, Baldwyn; Ignell, Rickard; Hill, Sharon R

2018-02-21

Anopheles arabiensis is a key vector for the transmission of human malaria in sub-Saharan Africa. Over the past 10,000 years, humans have successfully cultivated grasses and altered the landscape, creating An. arabiensis favourable environments that contain excellent habitats for both larvae and adults. Sugarcane is the most expanding agricultural system in sub-Saharan Africa, and is linked to the increased threat of malaria in rural communities. The prolific production and wind dispersal of sugarcane pollen, together with standing pools of water, often provide, as a result of irrigation, a nutrient-rich environment for the offspring of gravid malaria mosquitoes. In the present study, sugarcane pollen-associated volatiles from two cultivars are shown to attract gravid An. arabiensis in a still air two-port olfactometer and stimulate egg laying in an oviposition bioassay. Through combined gas chromatography and electroantennographic detection, as well as combined gas chromatography and mass spectrometric analyses, we identified the bioactive volatiles and generated a synthetic blend that reproduced the full behavioural repertoire of gravid mosquitoes in the Y-tube assay. Two subtractive odour blends, when compared with the full blend, were significantly more attractive. These three and four-component subtractive blends share the compounds (1R)-(+)-α-pinene, nonanal and benzaldehyde, of which, (1R)-(+)-α-pinene and nonanal are found in the attractive odour blends from rice plants and maize pollen. In pairwise comparisons, the rice synthetic odour blend was more attractive to gravid mosquitoes than either of the pollen blends, whereas the pollen blends did not differ in attraction. The attraction of gravid females to sugarcane pollen volatiles demonstrated in this study, together with the previously found grass-associated volatiles, raise the potential of developing a bioactive chimeric blend to attract gravid malaria mosquitoes. This is discussed in relation to

Title, Description, and Subject are the Most Important Metadata Fields for Keyword Discoverability

Directory of Open Access Journals (Sweden)

Laura Costello

2016-09-01

Full Text Available A Review of: Yang, L. (2016. Metadata effectiveness in internet discovery: An analysis of digital collection metadata elements and internet search engine keywords. College & Research Libraries, 77(1, 7-19. http://doi.org/10.5860/crl.77.1.7 Objective – To determine which metadata elements best facilitate discovery of digital collections. Design – Case study. Setting – A public research university serving over 32,000 graduate and undergraduate students in the Southwestern United States of America. Subjects – A sample of 22,559 keyword searches leading to the institution’s digital repository between August 1, 2013, and July 31, 2014. Methods – The author used Google Analytics to analyze 73,341 visits to the institution’s digital repository. He determined that 22,559 of these visits were due to keyword searches. Using Random Integer Generator, the author identified a random sample of 378 keyword searches. The author then matched the keywords with the Dublin Core and VRA Core metadata elements on the landing page in the digital repository to determine which metadata field had drawn the keyword searcher to that particular page. Many of these keywords matched to more than one metadata field, so the author also analyzed the metadata elements that generated unique keyword hits and those fields that were frequently matched together. Main Results – Title was the most matched metadata field with 279 matched keywords from searches. Description and Subject were also significant fields with 208 and 79 matches respectively. Slightly more than half of the results, 195 keywords, matched the institutional repository in one field only. Both Title and Description had significant match rates both independently and in conjunction with other elements, but Subject keywords were the sole match in only three of the sampled cases. Conclusion – The Dublin Core elements of Title, Description, and Subject were the most frequently matched fields in keyword

New Tools to Document and Manage Data/Metadata: Example NGEE Arctic and ARM

Science.gov (United States)

Crow, M. C.; Devarakonda, R.; Killeffer, T.; Hook, L.; Boden, T.; Wullschleger, S.

2017-12-01

Tools used for documenting, archiving, cataloging, and searching data are critical pieces of informatics. This poster describes tools being used in several projects at Oak Ridge National Laboratory (ORNL), with a focus on the U.S. Department of Energy's Next Generation Ecosystem Experiment in the Arctic (NGEE Arctic) and Atmospheric Radiation Measurements (ARM) project, and their usage at different stages of the data lifecycle. The Online Metadata Editor (OME) is used for the documentation and archival stages while a Data Search tool supports indexing, cataloging, and searching. The NGEE Arctic OME Tool [1] provides a method by which researchers can upload their data and provide original metadata with each upload while adhering to standard metadata formats. The tool is built upon a Java SPRING framework to parse user input into, and from, XML output. Many aspects of the tool require use of a relational database including encrypted user-login, auto-fill functionality for predefined sites and plots, and file reference storage and sorting. The Data Search Tool conveniently displays each data record in a thumbnail containing the title, source, and date range, and features a quick view of the metadata associated with that record, as well as a direct link to the data. The search box incorporates autocomplete capabilities for search terms and sorted keyword filters are available on the side of the page, including a map for geo-searching. These tools are supported by the Mercury [2] consortium (funded by DOE, NASA, USGS, and ARM) and developed and managed at Oak Ridge National Laboratory. Mercury is a set of tools for collecting, searching, and retrieving metadata and data. Mercury collects metadata from contributing project servers, then indexes the metadata to make it searchable using Apache Solr, and provides access to retrieve it from the web page. Metadata standards that Mercury supports include: XML, Z39.50, FGDC, Dublin-Core, Darwin-Core, EML, and ISO-19115.

System for Earth Sample Registration SESAR: Services for IGSN Registration and Sample Metadata Management

Science.gov (United States)

Chan, S.; Lehnert, K. A.; Coleman, R. J.

2011-12-01

SESAR, the System for Earth Sample Registration, is an online registry for physical samples collected for Earth and environmental studies. SESAR generates and administers the International Geo Sample Number IGSN, a unique identifier for samples that is dramatically advancing interoperability amongst information systems for sample-based data. SESAR was developed to provide the complete range of registry services, including definition of IGSN syntax and metadata profiles, registration and validation of name spaces requested by users, tools for users to submit and manage sample metadata, validation of submitted metadata, generation and validation of the unique identifiers, archiving of sample metadata, and public or private access to the sample metadata catalog. With the development of SESAR v3, we placed particular emphasis on creating enhanced tools that make metadata submission easier and more efficient for users, and that provide superior functionality for users to manage metadata of their samples in their private workspace MySESAR. For example, SESAR v3 includes a module where users can generate custom spreadsheet templates to enter metadata for their samples, then upload these templates online for sample registration. Once the content of the template is uploaded, it is displayed online in an editable grid format. Validation rules are executed in real-time on the grid data to ensure data integrity. Other new features of SESAR v3 include the capability to transfer ownership of samples to other SESAR users, the ability to upload and store images and other files in a sample metadata profile, and the tracking of changes to sample metadata profiles. In the next version of SESAR (v3.5), we will further improve the discovery, sharing, registration of samples. For example, we are developing a more comprehensive suite of web services that will allow discovery and registration access to SESAR from external systems. Both batch and individual registrations will be possible

Leveraging Metadata to Create Interactive Images... Today!

Science.gov (United States)

Hurt, Robert L.; Squires, G. K.; Llamas, J.; Rosenthal, C.; Brinkworth, C.; Fay, J.

2011-01-01

The image gallery for NASA's Spitzer Space Telescope has been newly rebuilt to fully support the Astronomy Visualization Metadata (AVM) standard to create a new user experience both on the website and in other applications. We encapsulate all the key descriptive information for a public image, including color representations and astronomical and sky coordinates and make it accessible in a user-friendly form on the website, but also embed the same metadata within the image files themselves. Thus, images downloaded from the site will carry with them all their descriptive information. Real-world benefits include display of general metadata when such images are imported into image editing software (e.g. Photoshop) or image catalog software (e.g. iPhoto). More advanced support in Microsoft's WorldWide Telescope can open a tagged image after it has been downloaded and display it in its correct sky position, allowing comparison with observations from other observatories. An increasing number of software developers are implementing AVM support in applications and an online image archive for tagged images is under development at the Spitzer Science Center. Tagging images following the AVM offers ever-increasing benefits to public-friendly imagery in all its standard forms (JPEG, TIFF, PNG). The AVM standard is one part of the Virtual Astronomy Multimedia Project (VAMP); http://www.communicatingastronomy.org

Extraction optimization by response surface methodology: Purification and characterization of phytosterol from sugarcane (Saccharum officinarum L.) rind.

Science.gov (United States)

Feng, Simin; Luo, Zisheng; Zhong, Zhou; Jiang, Lei; Tang, Kaichen

2014-06-01

A green, simple, and effective method for the extraction of sugarcane lipids from sugarcane rind was investigated by response surface methodology. The optimum conditions of technological progress obtained through response surface methodology were as follows: liquid-to-solid ratio 7.94: 1 mL/g, extraction temperature 50°C and extraction time 5.98 h. The practical sugarcane lipids extraction yield was 6.55 ± 0.28%, which was in good consistence with the predicted extraction yield of 6.47%. The results showed that the sugarcane lipids extraction yield obtained in optimum conditions increased by 1.16∼7.28-fold compared to the yields obtained in single-factor experiments. After saponification and SPE steps, the nonsaponifiable fraction of sugarcane lipids was analyzed by gas chromatography with mass spectrometry and high-performance liquid chromatography. β-Sitosterol, stigmasterol, and campesterol were the prevailing phytosterols in the sample, while fucosterol, gramisterol, stigmast-7-en-3-ol, (3β,5α,24S)-, stigmasta-4,6,22-trien-3α-ol, and cholest-8(14)-en-3β-ol acetate were also identified as minor steroids. Furthermore, the content of β-sitosterol and a mixture of campesterol and stigmasterol (quantified by high-performance liquid chromatography) was 44.18 mg/100 g dry weight and 43.20 mg stigmasterol/100 g dry weight, respectively. Our results indicate that sugarcane rind is a good source of phytosterol. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.