WorldWideScience

Sample records for fish communities evolution

  1. Community Evolution

    OpenAIRE

    Saganowski, Stanisław; Bródka, Piotr; Kazienko, Przemysław

    2016-01-01

    The continuous interest in the social network area contributes to the fast development of this field. The new possibilities of obtaining and storing data facilitate deeper analysis of the entire social network, extracted social groups and single individuals as well. One of the most interesting research topic is the network dynamics and dynamics of social groups in particular, it means analysis of group evolution over time. It is the natural step forward after social community extraction. Havi...

  2. Fishing Community Profiles

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — To enable fisheries managers to comply with National Standard 8 (NS8), NMFS social scientists around the nation are preparing fishing community profiles that present...

  3. Freshwater Fish Communities

    Science.gov (United States)

    Freshwater fish are ecologically important in stream ecosystems, and they provide people with significant food, recreation, and conservation value as biological indicator of freshwater streams. Historically, the streams and rivers of southern New England supported moderately dive...

  4. The offshore benthic fish community

    Science.gov (United States)

    Lantry, Brian F.; Lantry, Jana R.; Weidel, Brian C.; Walsh, Maureen; Hoyle, James A.; Schaner, Teodore; Neave, Fraser B.; Keir, Michael

    2014-01-01

    Lake Ontario’s offshore benthic fish community includes primarily slimy sculpin, lake whitefish, rainbow smelt, lake trout, burbot, and sea lamprey. Of these, lake trout have been the focus of an international restoration effort for more than three decades (Elrod et al. 1995; Lantry and Lantry 2008). The deepwater sculpin and three species of deepwater ciscoes (Coregonus spp.) that were historically important in the offshore benthic zone became rare or were extirpated by the 1960s (Christie 1973; Owens et al. 2003; Lantry et al. 2007b; Roth et al. 2013). Ecosystem changes continue to influence the offshore benthic fish community, including the effects of dreissenid mussels, the near disappearance of burrowing amphipods (Diporeia spp.) (Dermott et al. 2005; Watkins et al. 2007), and the increased abundance and expanded geographic distribution of round goby (see Nearshore Fish Community chapter) (Lantry et al. 2007b). The fish-community objectives for the offshore benthic fish community, as described by Stewart et al. (1999), are:

  5. Offshore Fish Community: Ecological Interactions

    Science.gov (United States)

    The offshore (>80 m) fish community of Lake Superior is made up of predominately native species. The most prominent species are deepwater sculpin, kiyi, cisco, siscowet lake trout, burbot, and the exotic sea lamprey. Bloater and shortjaw cisco are also found in the offshore zone...

  6. Fishing degrades size structure of coral reef fish communities.

    Science.gov (United States)

    Robinson, James P W; Williams, Ivor D; Edwards, Andrew M; McPherson, Jana; Yeager, Lauren; Vigliola, Laurent; Brainard, Russell E; Baum, Julia K

    2017-03-01

    Fishing pressure on coral reef ecosystems has been frequently linked to reductions of large fishes and reef fish biomass. Associated impacts on overall community structure are, however, less clear. In size-structured aquatic ecosystems, fishing impacts are commonly quantified using size spectra, which describe the distribution of individual body sizes within a community. We examined the size spectra and biomass of coral reef fish communities at 38 US-affiliated Pacific islands that ranged in human presence from near pristine to human population centers. Size spectra 'steepened' steadily with increasing human population and proximity to market due to a reduction in the relative biomass of large fishes and an increase in the dominance of small fishes. Reef fish biomass was substantially lower on inhabited islands than uninhabited ones, even at inhabited islands with the lowest levels of human presence. We found that on populated islands size spectra exponents decreased (analogous to size spectra steepening) linearly with declining biomass, whereas on uninhabited islands there was no relationship. Size spectra were steeper in regions of low sea surface temperature but were insensitive to variation in other environmental and geomorphic covariates. In contrast, reef fish biomass was highly sensitive to oceanographic conditions, being influenced by both oceanic productivity and sea surface temperature. Our results suggest that community size structure may be a more robust indicator than fish biomass to increasing human presence and that size spectra are reliable indicators of exploitation impacts across regions of different fish community compositions, environmental drivers, and fisheries types. Size-based approaches that link directly to functional properties of fish communities, and are relatively insensitive to abiotic variation across biogeographic regions, offer great potential for developing our understanding of fishing impacts in coral reef ecosystems. © 2016

  7. 85 million years of pelagic ecosystem evolution: Pacific Ocean deep-sea ichthyolith records reveal fish community dynamics and a long-term decline in sharks

    Science.gov (United States)

    Sibert, E. C.; Norris, R. D.; Cuevas, J. M.; Graves, L. G.

    2015-12-01

    The structure and productivity of open ocean consumers has undergone major changes over the past 85 million years. Here, we present the first long-term detailed records of pelagic fish and sharks utilizing the record of ichthyoliths (teeth and dermal scales) from the deep Pacific Ocean. While the North and South Pacific Oceans show similar patterns throughout the 85 million year history, the North Pacific ichthyolith accumulation is significantly higher than the South Pacific, suggesting that the basin has been a more productive region for tens of millions of years. Fish and sharks were not abundant in the Pacific gyres until ~75 million years ago (Ma) suggesting that neither group was quantitatively important in oligotrophic pelagic food webs prior to the latest Cretaceous. Relative to ray-finned fish, sharks were common in the ancient ocean. Most ichthyolith assemblages have >50% shark dermal scales (denticles), but denticle abundance has been declining in both absolute and relative abundance since the Cretaceous-Paleogene (K/Pg) mass extinction. The accumulation rate of ichthyoliths of both sharks and ray-finned fish was highest in the Early Eocene, during the peak of the Cenozoic 'greenhouse' climate where production of shark dermal denticles and fish teeth increased almost five times over Paleocene production rates. Ichthyolith fluxes fell with cooler climates in the later Eocene and Oligocene, but fish production is almost always higher than in the Cretaceous and Paleocene reflecting the expanded ecological roles and importance of pelagic fish in marine ecosystems. Shark denticle production fell to less than half that of the Cretaceous by 20 Ma when it dropped abruptly to near-zero levels. Currently denticles make up sharks appear to be falling as major pelagic consumers over the Late Cretaceous and Cenozoic, and particularly over the past 20 Ma, perhaps reflecting demographic changes in shark and fish communities, or the rise of resource competition from

  8. Amphibious fishes: evolution and phenotypic plasticity.

    Science.gov (United States)

    Wright, Patricia A; Turko, Andy J

    2016-08-01

    Amphibious fishes spend part of their life in terrestrial habitats. The ability to tolerate life on land has evolved independently many times, with more than 200 extant species of amphibious fishes spanning 17 orders now reported. Many adaptations for life out of water have been described in the literature, and adaptive phenotypic plasticity may play an equally important role in promoting favourable matches between the terrestrial habitat and behavioural, physiological, biochemical and morphological characteristics. Amphibious fishes living at the interface of two very different environments must respond to issues relating to buoyancy/gravity, hydration/desiccation, low/high O2 availability, low/high CO2 accumulation and high/low NH3 solubility each time they traverse the air-water interface. Here, we review the literature for examples of plastic traits associated with the response to each of these challenges. Because there is evidence that phenotypic plasticity can facilitate the evolution of fixed traits in general, we summarize the types of investigations needed to more fully determine whether plasticity in extant amphibious fishes can provide indications of the strategies used during the evolution of terrestriality in tetrapods. © 2016. Published by The Company of Biologists Ltd.

  9. Molecular epidemiology and evolution of fish Novirhabdoviruses

    Science.gov (United States)

    Kurath, Gael

    2014-01-01

    The genus Novirhabdoviridae contains several of the important rhabdoviruses that infect fish hosts. There are four established virus species: Infectious hematopoietic necrosis virus (IHNV), Viral hemorrhagic septicemia virus (VHSV), Hirame rhabdovirus(HIRRV), and Snakehead rhabdovirus (SHRV). Viruses of these species vary in host and geographic range, and they have all been studied at the molecular and genomic level. As globally significant pathogens of cultured fish, IHNV and VHSV have been particularly well studied in terms of molecular epidemiology and evolution. Phylogenic analyses of hundreds of field isolates have defined five major genogroups of IHNV and four major genotypes of VHSV worldwide. These phylogenies are informed by the known histories of IHNV and VHSV, each involving a series of viral emergence events that are sometimes associated with host switches, most often into cultured rainbow trout. In general, IHNV has relatively low genetic diversity and a narrow host range, and has been spread from its endemic source in North American to Europe and Asia due to aquaculture activities. In contrast, VHSV has broad host range and high genetic diversity, and the source of emergence events is virus in widespread marine fish reservoirs in the northern Atlantic and Pacific Oceans. Common mechanisms of emergence and host switch events include use of raw feed, proximity to wild fish reservoirs of virus, and geographic translocations of virus or naive fish hosts associated with aquaculture.

  10. Adaptive evolution in ecological communities.

    Directory of Open Access Journals (Sweden)

    Martin M Turcotte

    Full Text Available Understanding how natural selection drives evolution is a key challenge in evolutionary biology. Most studies of adaptation focus on how a single environmental factor, such as increased temperature, affects evolution within a single species. The biological relevance of these experiments is limited because nature is infinitely more complex. Most species are embedded within communities containing many species that interact with one another and the physical environment. To understand the evolutionary significance of such ecological complexity, experiments must test the evolutionary impact of interactions among multiple species during adaptation. Here we highlight an experiment that manipulates species composition and tracks evolutionary responses within each species, while testing for the mechanisms by which species interact and adapt to their environment. We also discuss limitations of previous studies of adaptive evolution and emphasize how an experimental evolution approach can circumvent such shortcomings. Understanding how community composition acts as a selective force will improve our ability to predict how species adapt to natural and human-induced environmental change.

  11. Fish Ecology and Evolution in the World's Oxygen Minimum Zones and Implications of a Warming Ocean

    Science.gov (United States)

    Gallo, N.; Navarro, E. C.; Yazzie, A. T.; Barry, J. P.; Levin, L. A.

    2016-02-01

    Predicting how demersal fish communities will respond as hypoxic areas expand with climate change requires an understanding of how existing oxygen gradients influence the abundance, diversity, and trophic ecology of demersal fish communities. A literature review of studies from continental margins with oxygen minimum zones in the Pacific, Atlantic, and Indian Ocean, is combined with new data from research cruises to the Gulf of California and the US West Coast, to examine how hypoxic areas influence the structure and function of demersal fish communities. Oxygen minimum zones (OMZs) are deep-sea environments where organisms experience chronic hypoxic and suboxic conditions and have persisted over much longer timescales than coastal eutrophication-induced hypoxic zones, allowing for the evolution of adaptations to low oxygen conditions. While coastal studies have found that fish are one of the most hypoxia-intolerant groups, representative demersal fish species in the orders Cottiformes, Scorpaeniformes, Pleuronectiformes, Gobiiformes, Perciformes, Lophiiformes, Carcharhiniformes, Ophidiiformes, Myxiniformes, and Gadiformes have evolved to exploit physiologically extreme OMZ environments and are important components of the benthic community. In OMZs, certain fish species are some of the most hypoxia-tolerant members of the megafauna community, present even under extremely low oxygen conditions (< 5 µmol/kg) where most invertebrates are absent, though these communities are typically characterized by single-species dominance. To explore differences in the trophic ecology of these "hypoxia-tolerant" fish communities, stable isotope and gut content analysis are used to compare the Southern California Bight OMZ core fish community to the hypoxia-intolerant upper slope fish community. Results show that fish living in the OMZ core have significantly enriched δ13C and δ15N signatures and feed on different prey items.

  12. Does functional redundancy stabilize fish communities?

    DEFF Research Database (Denmark)

    Rice, Jake; Daan, Niels; Gislason, Henrik

    2013-01-01

    in abundance or biomass could be accounted for by the Law of Large Numbers, providing no evidence that specific ecological processes or co-adaptations are necessary to produce this effect. This implies that successful conservation policies to maintain the resilience of a marine fish community could be based......Functional redundancy of species sharing a feeding strategy and/or maximum size has been hypothesized to contribute to increased resilience of marine fish communities (the “portfolio effect”). A consistent time-series of survey data of fish in the North Sea was used to examine if trophic functional...... groups or maximum length of species (Lmax) groups with larger numbers of species had lower coefficients of variation in abundance and biomass over time than did groupings with fewer species. Results supported this hypothesis. However, the stabilizing effect of numbers of species in a group on variation...

  13. Changes in the North Sea fish community: evidence of indirect effects of fishing?

    DEFF Research Database (Denmark)

    Daan, N.; Gislason, Henrik; Pope, J.

    2005-01-01

    , but such changes may simply reflect the cumulative, direct effects of fishing through selective removal of large individuals. If there is resilience in a fish community towards fishing, we may expect increases in specific components, for instance as a consequence of an associated reduction in predation and....... Taking average fishing mortality of assessed commercial species as an index of exploitation rate of the fish community, it appears that fishing effort reached its maximum in the mid-1980s and has declined slightly since. If the observed changes in the community are caused by indirect effects of fishing...

  14. Relative and combined effects of habitat and fishing on reef fish communities across a limited fishing gradient at Ningaloo.

    Science.gov (United States)

    Wilson, Shaun K; Babcock, Russ C; Fisher, Rebecca; Holmes, Thomas H; Moore, James A Y; Thomson, Damian P

    2012-10-01

    Habitat degradation and fishing are major drivers of temporal and spatial changes in fish communities. The independent effects of these drivers are well documented, but the relative importance and interaction between fishing and habitat shifts is poorly understood, particularly in complex systems such as coral reefs. To assess the combined and relative effects of fishing and habitat we examined the composition of fish communities on patch reefs across a gradient of high to low structural complexity in fished and unfished areas of the Ningaloo Marine Park, Western Australia. Biomass and species richness of fish were positively correlated with structural complexity of reefs and negatively related to macroalgal cover. Total abundance of fish was also positively related to structural complexity, however this relationship was stronger on fished reefs than those where fishing is prohibited. The interaction between habitat condition and fishing pressure is primarily due to the high abundance of small bodied planktivorous fish on fished reefs. However, the influence of management zones on the abundance and biomass of predators and target species is small, implying spatial differences in fishing pressure are low and unlikely to be driving this interaction. Our results emphasise the importance of habitat in structuring reef fish communities on coral reefs especially when gradients in fishing pressure are low. The influence of fishing effort on this relationship may however become more important as fishing pressure increases. Copyright © 2012 Elsevier Ltd. All rights reserved.

  15. Comparison of fish-community size spectra based on length ...

    African Journals Online (AJOL)

    Estimates of fish-community size spectra are promising indicators of the impact of fishing on fish assemblages. Size spectra consist of logarithmic graphs of abundance plotted against fish body size. Size spectra may either be constructed from length frequency data or estimated from the mean sizes and abundances of the ...

  16. Offshore Fish Community: Ecological Interactions | Science ...

    Science.gov (United States)

    The offshore (>80 m) fish community of Lake Superior is made up of predominately native species. The most prominent species are deepwater sculpin, kiyi, cisco, siscowet lake trout, burbot, and the exotic sea lamprey. Bloater and shortjaw cisco are also found in the offshore zone. Bloater is abundant in the offshore zone but appears restricted to depths shallower than 150 m (Selgeby and Hoff 1996; Stockwell et al. 2010), although it occuppied greater depths several decades ago (Dryer 1966; Peck 1977). Shortjaw is relatively rare in the offshore zone (Hoff and Todd 2004; Gorman and Hoff 2009; Gorman and Todd 2007). Lake whitefish is also known to frequent bathymetric depths >100 m (Yule et al. 2008b). In this chapter, we develop a conceptual model of the offshore food web based on data collected during 2001-2005 and on inferences from species interactions known for the nearshore fish community. We then develop a framework for examination of energy and nutrient movements within the pelagic and benthic habitats of the offshore zone and across the offshore and nearshore zones. To document research results.

  17. The evolution of phenotypic plasticity in fish swimming

    Science.gov (United States)

    Oufiero, Christopher E.; Whitlow, Katrina R.

    2016-01-01

    Abstract Fish have a remarkable amount of variation in their swimming performance, from within species differences to diversity among major taxonomic groups. Fish swimming is a complex, integrative phenotype and has the ability to plastically respond to a myriad of environmental changes. The plasticity of fish swimming has been observed on whole-organismal traits such as burst speed or critical swimming speed, as well as underlying phenotypes such as muscle fiber types, kinematics, cardiovascular system, and neuronal processes. Whether the plastic responses of fish swimming are beneficial seems to depend on the environmental variable that is changing. For example, because of the effects of temperature on biochemical processes, alterations of fish swimming in response to temperature do not seem to be beneficial. In contrast, changes in fish swimming in response to variation in flow may benefit the fish to maintain position in the water column. In this paper, we examine how this plasticity in fish swimming might evolve, focusing on environmental variables that have received the most attention: temperature, habitat, dissolved oxygen, and carbon dioxide variation. Using examples from previous research, we highlight many of the ways fish swimming can plastically respond to environmental variation and discuss potential avenues of future research aimed at understanding how plasticity of fish swimming might evolve. We consider the direct and indirect effects of environmental variation on swimming performance, including changes in swimming kinematics and suborganismal traits thought to predict swimming performance. We also discuss the role of the evolution of plasticity in shaping macroevolutionary patterns of diversity in fish swimming. PMID:29491937

  18. Changes in the North Sea fish community: evidence of indirect effects of fishing?

    NARCIS (Netherlands)

    Daan, N.; Gislason, H.; Pope, J.G.; Rice, J.C.

    2005-01-01

    We investigate changes in the North Sea fish community with particular reference to possible indirect effects of fishing, mediated through the ecosystem. In the past, long-term changes in the slope of size spectra of research vessel catches have been related to changes in fishing effort, but such

  19. Effect of Recreational Fish Feeding on Reef Fish Community ...

    African Journals Online (AJOL)

    ... that the reaction to bread at feeding sites was quicker than at control sites, which indicates that some species learn to feed on this novel source of food. Keywords:human-animal interactions, reef fish, recreational fish feeding, tourism impacts, MPAs, coral reefs, Kenya West Indian Ocean Journal of Marine Science Vol.

  20. The consequences of balanced harvesting of fish communities

    DEFF Research Database (Denmark)

    Jacobsen, Nis Sand; Gislason, Henrik; Andersen, Ken Haste

    2014-01-01

    community structure and yield. We use a size- and trait-based model that resolves individual interactions through competition and predation to compare balanced harvesting with traditional selective harvesting, which protects juvenile fish from fishing. Four different exploitation patterns, generated......Balanced harvesting, where species or individuals are exploited in accordance with their productivity, has been proposed as a way to minimize the effects of fishing on marine fish communities and ecosystems. This calls for a thorough examination of the consequences balanced harvesting has on fish...... by combining selective or unselective harvesting with balanced or unbalanced fishing, are compared. We find that unselective balanced fishing, where individuals are exploited in proportion to their productivity, produces a slightly larger total maximum sustainable yield than the other exploitation patterns and...

  1. Species succession and sustainability of the Great Lakes fish community

    Science.gov (United States)

    Eshenroder, Randy L.; Burnham-Curtis, Mary K.; Taylor, William W.; Ferreri, C. Paola

    1999-01-01

    This article concentrates on the sustainability of the offshore pelagic and deepwater fish communities that were historically dominated by lake trout (Salvelinus namaycush). The causes of alteration in these fish communities (i.e., overfishing, introductions, and cultural eutrophication) were identified by Loftus and Regier (1972). Here we look at the ecology of these altered communities in relation to sustainability and discuss the need for restoration.

  2. Opinion Evolution in Closed Community

    Science.gov (United States)

    Sznajd-Weron, Katarzyna; Sznajd, Józef

    A simple Ising spin model which can describe a mechanism of making a decision in a closed community is proposed. It is shown via standard Monte Carlo simulations that very simple rules lead to rather complicated dynamics and to a power law in the decision time distribution. It is found that a closed community has to evolve either to a dictatorship or a stalemate state (inability to take any common decision). A common decision can be taken in a ``democratic way'' only by an open community.

  3. Change in fish community structure in the Barents Sea.

    Directory of Open Access Journals (Sweden)

    Michaela Aschan

    Full Text Available Change in oceanographic conditions causes structural alterations in marine fish communities, but this effect may go undetected as most monitoring programs until recently mainly have focused on oceanography and commercial species rather than on whole ecosystems. In this paper, the objective is to describe the spatial and temporal changes in the Barents Sea fish community in the period 1992-2004 while taking into consideration the observed abundance and biodiversity patterns for all 82 observed fish species. We found that the spatial structure of the Barents Sea fish community was determined by abiotic factors such as temperature and depth. The observed species clustered into a deep assemblage, a warm water southern assemblage, both associated with Atlantic water, and a cold water north-eastern assemblage associated with mixed water. The latitude of the cold water NE and warm water S assemblages varied from year to year, but no obvious northward migration was observed over time. In the period 1996-1999 we observed a significant reduction in total fish biomass, abundance, mean fish weight, and a change in community structure including an increase in the pelagic/demersal ratio. This change in community structure is probably due to extremely cold conditions in 1996 impacting on a fish community exposed to historically high fishing rates. After 1999 the fish community variables such as biomass, abundance, mean weight, P/D ratio as well as community composition did not return to levels of the early 90s, although fishing pressure and climatic conditions returned to earlier levels.

  4. The role of the nervous system in fish evolution

    Directory of Open Access Journals (Sweden)

    Michael H Hofmann

    2015-12-01

    Full Text Available The nervous system plays an important role in the evolution and adaptation of animals. All sensory and motor functions as well as cognitive abilities are organized in the brain and spinal cord. Volumetric measurements of different brain regions were made in more than 150 species of ray finned fishes as well as in several outgroups. In Actanthopterygii, the hypothalamus shows greatest enlargement most likely due to an enormous visual input via the nucleus glomerulosos. The telencephalon is highly differentiated in many acanthopterygii, mostly coral reef species, but its relative size is not much effected. There is, however, a clear shift from olfactory to visual functions in ray finned fishes. In species with a highly differentiated telencephalon, the area where place memory may be located is very prominent. In basal ray finned fishes, lungfish, amphibia and elasmobranchs, the olfactory bulb is relatively large and the ratio of the olfactory bulb and telencephalon large as well. This holds also for elopomorpha and spiny eels, but in most other groups vision dominates. Apart from differences between larger clades, variation in brain architecture are also seen in closely related species and even between sexes of the same species. Profound differences are present in the cerebellum between male and female swordtails and in the telencephalon of sticklebacks. Morphometric analysis of brain architecture turned out to be an important tool to study the evolution and adaptations of the brain in fishes.

  5. Status and future of Lake Huron fish communities

    Science.gov (United States)

    Ebener, M.P.; Johnson, J.E.; Reid, D.M.; Payne, N.P.; Argyle, R.L.; Wright, G.M.; Krueger, K.; Baker, J.P.; Morse, T.; Weise, J.; Munawar, M.; Edsall, T.; Leach, J.

    1995-01-01

    In 1993, fishery management agencies with jurisdiction over Lake Huron fish populations developed draft fish community objectives in response to the Joint Strategic Plan for Management of Great Lakes Fisheries. The Joint Strategic Plan charged the Great Lakes Fishery Commission sponsored Lake Huron Committee to define objectives for what the fish community of Lake Huron should look like in the future, and to develop means for measuring progress toward the objectives. The overall management objective for Lake Huron is to 'over the next two decades restore an ecologically balanced fish community dominated by top predators and consisting largely of self-sustaining, indigenous and naturalized species and capable of sustaining annual harvests of 8.9 million kg'. This paper represents the first attempt at consolidating current biological information from different management agencies on a lake-wide basis for the purpose of assessing the current status and dynamics of Lake Huron fishes.

  6. Transactional sex in the fishing communities along Lake Victoria ...

    African Journals Online (AJOL)

    The study describes the nature, context and implications of a unique form of transactional sexual relationships in the fishing communities along Lake Victoria in Kisumu County, Kenya. We conducted 12 focus group discussions and 17 key informant interviews among fishermen, fishmongers and fish transporters in Kisumu.

  7. Baseline assessment of fish communities of the Flower Garden Banks

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The work developed baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys employed diving,...

  8. Habitat degradation and fishing effects on the size structure of coral reef fish communities.

    Science.gov (United States)

    Wilson, S K; Fisher, R; Pratchett, M S; Graham, N A J; Dulvy, N K; Turner, R A; Cakacaka, A; Polunin, N V C

    2010-03-01

    Overfishing and habitat degradation through climate change pose the greatest threats to sustainability of marine resources on coral reefs. We examined how changes in fishing pressure and benthic habitat composition influenced the size spectra of island-scale reef fish communities in Lau, Fiji. Between 2000 and 2006 fishing pressure declined in the Lau Islands due to declining human populations and reduced demand for fresh fish. At the same time, coral cover declined and fine-scale architectural complexity eroded due to coral bleaching and outbreaks of crown-of-thorns starfish, Acanthaster planci. We examined the size distribution of reef fish communities using size spectra analysis, the linearized relationship between abundance and body size class. Spatial variation in fishing pressure accounted for 31% of the variation in the slope of the size spectra in 2000, higher fishing pressure being associated with a steeper slope, which is indicative of fewer large-bodied fish and/or more small-bodied fish. Conversely, in 2006 spatial variation in habitat explained 53% of the variation in the size spectra slopes, and the relationship with fishing pressure was much weaker (approximately 12% of variation) than in 2000. Reduced cover of corals and lower structural complexity was associated with less steep size spectra slopes, primarily due to reduced abundance of fish < 20 cm. Habitat degradation will compound effects of fishing on coral reefs as increased fishing reduces large-bodied target species, while habitat loss results in fewer small-bodied juveniles and prey that replenish stocks and provide dietary resources for predatory target species. Effective management of reef resources therefore depends on both reducing fishing pressure and maintaining processes that encourage rapid recovery of coral habitat.

  9. Interactions between fishes and the structure of fish communities in Dutch shallow, eutrophic lakes

    NARCIS (Netherlands)

    Lammens, E.

    1986-01-01

    This thesis describes the structure of fish communities in Tjeukemeer (21 km 2) and some other surrounding very eutrophic lakes and emphasizes the interactions of the fishes with each other and their food organisms (predation and (exploitative) competition). It is a compilation of seven

  10. Preliminary assessment of factors influencing riverine fish communities in Massachusetts.

    Science.gov (United States)

    Armstrong, David S.; Richards, Todd A.; Brandt, Sara L.

    2010-01-01

    The U.S. Geological Survey, in cooperation with the Massachusetts Department of Conservation and Recreation (MDCR), Massachusetts Department of Environmental Protection (MDEP), and the Massachusetts Department of Fish and Game (MDFG), conducted a preliminary investigation of fish communities in small- to medium-sized Massachusetts streams. The objective of this investigation was to determine relations between fish-community characteristics and anthropogenic alteration, including flow alteration and impervious cover, relative to the effect of physical basin and land-cover (environmental) characteristics. Fish data were obtained for 756 fish-sampling sites from the Massachusetts Division of Fisheries and Wildlife fish-community database. A review of the literature was used to select a set of fish metrics responsive to flow alteration. Fish metrics tested include two fish-community metrics (fluvial-fish relative abundance and fluvial-fish species richness), and five indicator species metrics (relative abundance of brook trout, blacknose dace, fallfish, white sucker, and redfin pickerel). Streamflows were simulated for each fish-sampling site using the Sustainable Yield Estimator application (SYE). Daily streamflows and the SYE water-use database were used to determine a set of indicators of flow alteration, including percent alteration of August median flow, water-use intensity, and withdrawal and return-flow fraction. The contributing areas to the fish-sampling sites were delineated and used with a Geographic Information System (GIS) to determine a set of environmental characteristics, including elevation, basin slope, percent sand and gravel, percent wetland, and percent open water, and a set of anthropogenic-alteration variables, including impervious cover and dam density. Two analytical techniques, quantile regression and generalized linear modeling, were applied to determine the association between fish-response variables and the selected environmental and

  11. Predicting Community Evolution in Social Networks

    Directory of Open Access Journals (Sweden)

    Stanisław Saganowski

    2015-05-01

    Full Text Available Nowadays, sustained development of different social media can be observed worldwide. One of the relevant research domains intensively explored recently is analysis of social communities existing in social media as well as prediction of their future evolution taking into account collected historical evolution chains. These evolution chains proposed in the paper contain group states in the previous time frames and its historical transitions that were identified using one out of two methods: Stable Group Changes Identification (SGCI and Group Evolution Discovery (GED. Based on the observed evolution chains of various length, structural network features are extracted, validated and selected as well as used to learn classification models. The experimental studies were performed on three real datasets with different profile: DBLP, Facebook and Polish blogosphere. The process of group prediction was analysed with respect to different classifiers as well as various descriptive feature sets extracted from evolution chains of different length. The results revealed that, in general, the longer evolution chains the better predictive abilities of the classification models. However, chains of length 3 to 7 enabled the GED-based method to almost reach its maximum possible prediction quality. For SGCI, this value was at the level of 3–5 last periods.

  12. Evolution of the fish rhabdovirus viral haemorrhagic septicaemia virus

    DEFF Research Database (Denmark)

    Einer-Jensen, Katja; Ahrens, Peter; Forsberg, Roald

    2004-01-01

    of free-living marine fish species. To study the genetic evolution of VHSV, the entire G gene from 74 isolates was analysed. VHSV from wild marine species caught in the Baltic Sea, Skagerrak, Kattegat, North Sea, and English Channel and European freshwater isolates, appeared to share a recent common...... ancestor. Based on the estimated nucleotide substitution rate, the ancestor of the European fresh water isolates was dated some 50 years ago. This finding fits with the initial reports in the 1950s on clinical observations of VHS in Danish freshwater rainbow trout farms. The study also indicates...

  13. Governance and Welfare of Fishing Communities of Lake Victoria ...

    African Journals Online (AJOL)

    These include the introduction of a co-management system of Beach Management units (BMUs) which are elected by the fishing communities and will work with the ... Educational standards remain low and many communities lack proper sanitation, and are therefore at risk of disease, while most basic facilities such as ...

  14. Fragmentation alters stream fish community structure in dendritic ecological networks.

    Science.gov (United States)

    Perkin, Joshuah S; Gido, Keith B

    2012-12-01

    Effects of fragmentation on the ecology of organisms occupying dendritic ecological networks (DENs) have recently been described through both conceptual and mathematical models, but few hypotheses have been tested in complex, real-world ecosystems. Stream fishes provide a model system for assessing effects of fragmentation on the structure of communities occurring within DENs, including how fragmentation alters metacommunity dynamics and biodiversity. A recently developed habitat-availability measure, the "dendritic connectivity index" (DCI), allows for assigning quantitative measures of connectivity in DENs regardless of network extent or complexity, and might be used to predict fish community response to fragmentation. We characterized stream fish community structure in 12 DENs in the Great Plains, USA, during periods of dynamic (summer) and muted (fall) discharge regimes to test the DCI as a predictive model of fish community response to fragmentation imposed by road crossings. Results indicated that fish communities in stream segments isolated by road crossings had reduced species richness (alpha diversity) relative to communities that maintained connectivity with the surrounding DEN during summer and fall. Furthermore, isolated communities had greater dissimilarity (beta diversity) to downstream sites notisolated by road crossings during summer and fall. Finally, dissimilarity among communities within DENs decreased as a function of increased habitat connectivity (measured using the DCI) for summer and fall, suggesting that communities within highly connected DENs tend to be more homogeneous. Our results indicate that the DCI is sensitive to community effects of fragmentation in riverscapes and might be used by managers to predict ecological responses to changes in habitat connectivity. Moreover, our findings illustrate that relating structural connectivity of riverscapes to functional connectivity among communities might aid in maintaining metacommunity

  15. Richness patterns in the parasite communities of exotic poeciliid fishes.

    Science.gov (United States)

    Dove, A D

    2000-06-01

    Three species of poeciliids (Gambusia holbrooki, Xiphophorus helleri and X. maculatus) and 15 species of ecologically similar native freshwater fishes (mainly eleotrids, ambassids, melanotaeniids and retropinnids) were examined for parasite richness to investigate parasite flux, qualitative differences, quantitative differences and the structuring factors in parasite communities in the 2 fish types in Queensland, Australia. Theory suggests that poeciliids would harbour depauperate parasite communities. Results supported this hypothesis; poeciliids harboured more species-poor parasite infracommunities and regional faunas than natives (P analysis of presence/absence data for poeciliids and the 6 most-sampled native fishes revealed that parasite communities of the 2 fish groups are qualitatively distinct; the proportion of parasite species with complex life-cycles was lower in poeciliids than in native species, and Myxosporea, Microspora, Coccidia and parasitic Crustacea were all absent from poeciliids. Limited exchange of parasite species has occurred between natives and poeciliids. Logistic ordinal regression analysis revealed that fish origin (exotic or native), environmental disturbance and host sex were all significant determinants of parasite community richness (P competitive advantage over native fishes because of their lack of parasites.

  16. Effects of fishing disturbance on benthic communities and secondary production within an intensively fished area

    NARCIS (Netherlands)

    Reiss, H.; Greenstreet, S.P.R.; Sieben, K.; Ehrich, S.; Piet, G.J.; Quirijns, F.; Wolff, W.J.; Kroncke, I.

    2009-01-01

    Demersal fishing alters seabed habitats and affects the structure and functioning of benthic invertebrate communities. At a critical level of disturbance, such communities may approach an equilibrium disturbed state in which a further increase in disturbance has little additional impact. Such

  17. Impact of fishing on size composition and diversity of demersal fish communities

    DEFF Research Database (Denmark)

    Bianchi, G.; Gislason, Henrik; Graham, K.

    2000-01-01

    . but particularly in high-latitude regions, we observe a decreasing trend in the slope, reflecting changes in size composition toward a relative decline in larger fish. The results from tropical regions are less conclusive, partly owing to the difficulty in obtaining consistent data series, but probably also......By analysing data sets from different world regions we add evidence to documented changes in demersal fish community structure that may be related to fishing. Changes are analysed by community properties that might be expected to capture relevant overall changes - size spectra slopes and intercepts...... because the generally higher growth rates of the constituent species make the slope less sensitive to changes in fishing. No evidence was found of any decline in species richness, while changes in diversity (richness and evenness) were caused either by changes in patterns of dominance or by changes...

  18. Fish-derived nutrient hotspots shape coral reef benthic communities.

    Science.gov (United States)

    Shantz, Andrew A; Ladd, Mark C; Schrack, Elizabeth; Burkepile, Deron E

    2015-12-01

    Animal-derived nutrients play an important role in structuring nutrient regimes within and between ecosystems. When animals undergo repetitive, aggregating behavior through time, they can create nutrient hotspots where rates of biogeochemical activity are higher than those found in the surrounding environment. In turn, these hotspots can influence ecosystem processes and community structure. We examined the potential for reef fishes from the family Haemulidae (grunts) to create nutrient hotspots and the potential impact of these hotspots on reef communities. To do so, we tracked the schooling locations of diurnally migrating grunts, which shelter at reef sites during the day but forage off reef each night, and measured the impact of these fish schools on benthic communities. We found that grunt schools showed a high degree of site fidelity, repeatedly returning to the same coral heads. These aggregations created nutrient hotspots around coral heads where nitrogen and phosphorus delivery was roughly 10 and 7 times the respective rates of delivery to structurally similar sites that lacked schools of these fishes. In turn, grazing rates of herbivorous fishes at grunt-derived hotspots were approximately 3 times those of sites where grunts were rare. These differences in nutrient delivery and grazing led to distinct benthic communities with higher cover of crustose coralline algae and less total algal abundance at grunt aggregation sites. Importantly, coral growth was roughly 1.5 times greater at grunt hotspots, likely due to the important nutrient subsidy. Our results suggest that schooling reef fish and their nutrient subsidies play an important role in mediating community structure on coral reefs and that overfishing may have important negative consequences on ecosystem functions. As such, management strategies must consider mesopredatory fishes in addition to current protection often offered to herbivores and top-tier predators. Furthermore, our results suggest that

  19. Community Structure Of Reef Fish In Eastern Luwu Water Territory

    Directory of Open Access Journals (Sweden)

    Henny Tribuana Cinnawara

    2015-01-01

    Full Text Available Abstract One bio-indicators the condition of coral reefs is a presence of reef fish. The purpose of research is to determine species composition abundance distribution and structure of reef fish communities in these waters. Data collection was conducted in April at six locations in the north and the south eastern Luwu. Mechanical Underwater Visual Cencus UVC and transect method Line intercept Transec LIT with SCUBA equipment used for research data collection. Total reef fish species collected as many as 366 species belonging to 31 families consisting of 150 species of fish target fish consumption 10 species of indicator fish indicator species 206 types of major fissh. The most dominant indicator type of fish is Chaetodon octofasciatus while the major dominant family Pomacentridae Labridae and Apogonidae. Diversity index values ranged from 2.145 to 3.408. Dominance index C is in the range of 0.056 to 0.298. The result is expected to be a reference literature as basic data for the management of reef fish especially in the waters of eastern Luwu.

  20. Do Mangroves Subsidize Carbon to Adjacent Mudflat Fish Communities?

    Science.gov (United States)

    Henkel, S.; Kasten, S.; Hartmann, J.; Staubwasser, M.; Hernandez, M. F.; West, L.; Midway, S. R.; Polito, M. J.

    2017-12-01

    Mangroves are often implicated as energetic sources for fisheries productivity. However, the validity of this connection still remains in contention. Stable isotopes may provide answers by tracking the use of specific basal carbon sources in fish and invertebrates living in mangrove-mudflat habitat mosaics. We analyzed 307 consumer samples representing n=44 fish and invertebrate species collected from mangrove forest creeks and adjacent mudflats in coastal Tanzania using bulk carbon and nitrogen stable isotope analysis. Given the proposed high productivity of mangrove habitats, we hypothesize that mudflat communities will have carbon stable isotope values similar to mangrove communities either through the flux of mangrove carbon into adjacent mudflats and/or via the movement of mudflat fish communities into and out of mangrove habitats. Alternatively, mangrove carbon is often refractory, which may result in mudflat communities with isotopic values that differ from those found in adjacent mangrove communities. This scenario would suggest limited carbon flow between mudflat and mangrove food webs and that the movement of fish into and out of mangrove habitats is related to shelter from predation more than feeding. Data analysis is ongoing to test these competing hypotheses. By understanding the contribution of mangrove carbon to adjacent habitats, managers in Tanzania can make better informed decisions regarding the protection of mangroves and the local fisheries, which are a crucial source of income and food.

  1. Reef fish communities in the central Red Sea show evidence of asymmetrical fishing pressure

    KAUST Repository

    Kattan, Alexander; Coker, Darren James; Berumen, Michael L.

    2017-01-01

    In order to assess human impacts and develop rational restoration goals for corals reefs, baseline estimates of fish communities are required. In Saudi Arabian waters of the Red Sea, widespread unregulated fishing is thought to have been ongoing for decades, but there is little direct evidence of the impact on reef communities. To contextualize this human influence, reef-associated fish assemblages on offshore reefs in Saudi Arabia and Sudan in the central Red Sea were investigated. These reefs have comparable benthic environments, experience similar oceanographic influences, and are separated by less than 300 km, offering an ideal comparison for identifying potential anthropogenic impacts such as fishing pressure. This is the first study to assess reef fish biomass in both these regions, providing important baselines estimates. We found that biomass of top predators on offshore Sudanese reefs was on average almost three times that measured on comparable reefs in Saudi Arabia. Biomass values from some of the most remote reefs surveyed in Sudan’s far southern region even approach those previously reported in the Northwestern Hawaiian Islands, northern Line Islands, Pitcairn Islands, and other isolated Pacific islands and atolls. The findings suggest that fishing pressure has significantly altered the fish community structure of Saudi Arabian Red Sea reefs, most conspicuously in the form of top predator removal. The results point towards the urgent need for enhanced regulation and enforcement of fishing practices in Saudi Arabia, while making a strong case for protection in the form of no-take marine protected areas to maintain preservation of the relatively intact southern Sudanese Red Sea.

  2. Reef fish communities in the central Red Sea show evidence of asymmetrical fishing pressure

    KAUST Repository

    Kattan, Alexander

    2017-03-09

    In order to assess human impacts and develop rational restoration goals for corals reefs, baseline estimates of fish communities are required. In Saudi Arabian waters of the Red Sea, widespread unregulated fishing is thought to have been ongoing for decades, but there is little direct evidence of the impact on reef communities. To contextualize this human influence, reef-associated fish assemblages on offshore reefs in Saudi Arabia and Sudan in the central Red Sea were investigated. These reefs have comparable benthic environments, experience similar oceanographic influences, and are separated by less than 300 km, offering an ideal comparison for identifying potential anthropogenic impacts such as fishing pressure. This is the first study to assess reef fish biomass in both these regions, providing important baselines estimates. We found that biomass of top predators on offshore Sudanese reefs was on average almost three times that measured on comparable reefs in Saudi Arabia. Biomass values from some of the most remote reefs surveyed in Sudan’s far southern region even approach those previously reported in the Northwestern Hawaiian Islands, northern Line Islands, Pitcairn Islands, and other isolated Pacific islands and atolls. The findings suggest that fishing pressure has significantly altered the fish community structure of Saudi Arabian Red Sea reefs, most conspicuously in the form of top predator removal. The results point towards the urgent need for enhanced regulation and enforcement of fishing practices in Saudi Arabia, while making a strong case for protection in the form of no-take marine protected areas to maintain preservation of the relatively intact southern Sudanese Red Sea.

  3. Restoration of a temperate reef: Effects on the fish community

    DEFF Research Database (Denmark)

    Støttrup, Josianne; Stenberg, Claus; Dahl, Karsten

    2014-01-01

    Trindel in Kattegat, Denmark, has now been re-established with the aim of restoring the reef’s historical structure and function. The effects of the restoration on the local fish community are reported here. Fishing surveys using gillnets and fyke nets were conducted before the restoration (2007) and four...... years after the restoration of the reef (2012). Species of the family Labridae, which have a high affinity for rocky reefs, dominated both before and after the restoration. Commercially important species such as cod Gadus morhua, and saithe Pollachius virens, occurred infrequently in the catches in 2007....... The findings highlight the importance of reef habitats for fish communities and the need for their protection...

  4. CHARACTERISTICS OFBENTHIC FISH COMMUNITY OF DNIEPER STORAGE POOL LITTORAL ZONE

    Directory of Open Access Journals (Sweden)

    Novitskiy R. A.

    2011-11-01

    Full Text Available Specific composition of bull-calves is analyzed together with their quantitative and quality parameters in the littoral zone of the Dnepr storage pool. The structural-functional features of organization of littoral communities of bull-calves were studied. The patterns of spatial distribution of Bull-calf (Gobiidae representatives were analyzed for the storage pool; their role in the littoral fish communities was clarified.

  5. Recruitment and retention of women in fishing communities in HIV ...

    African Journals Online (AJOL)

    ... complete all study visits. Conclusion: Women had better retention rates than men at 18 months. Strategies for recruiting and retaining younger women and those who have stayed for less than 5 years need to be developed for improved retention of women in fishing communities in HIV prevention and research Programs.

  6. Comparison of bacterial communities of tilapia fish from Cameroon ...

    African Journals Online (AJOL)

    Comparison of bacterial communities of tilapia fish from Cameroon and Vietnam using PCR-DGGE (polymerase chain reaction-denaturing gradient gel electrophoresis) ... The different PCR-DGGE 16S rDNA banding profiles obtained were analysed and results showed that there were specific bands for each geographical ...

  7. Social network analysis community detection and evolution

    CERN Document Server

    Missaoui, Rokia

    2015-01-01

    This book is devoted to recent progress in social network analysis with a high focus on community detection and evolution. The eleven chapters cover the identification of cohesive groups, core components and key players either in static or dynamic networks of different kinds and levels of heterogeneity. Other important topics in social network analysis such as influential detection and maximization, information propagation, user behavior analysis, as well as network modeling and visualization are also presented. Many studies are validated through real social networks such as Twitter. This edit

  8. Native fish conservation areas: a vision for large-scale conservation of native fish communities

    Science.gov (United States)

    Jack E. Williams; Richard N. Williams; Russell F. Thurow; Leah Elwell; David P. Philipp; Fred A. Harris; Jeffrey L. Kershner; Patrick J. Martinez; Dirk Miller; Gordon H. Reeves; Christopher A. Frissell; James R. Sedell

    2011-01-01

    The status of freshwater fishes continues to decline despite substantial conservation efforts to reverse this trend and recover threatened and endangered aquatic species. Lack of success is partially due to working at smaller spatial scales and focusing on habitats and species that are already degraded. Protecting entire watersheds and aquatic communities, which we...

  9. Exploring fish microbial communities to mitigate emerging diseases in aquaculture.

    Science.gov (United States)

    de Bruijn, Irene; Liu, Yiying; Wiegertjes, Geert F; Raaijmakers, Jos M

    2018-01-01

    Aquaculture is the fastest growing animal food sector worldwide and expected to further increase to feed the growing human population. However, existing and (re-)emerging diseases are hampering fish and shellfish cultivation and yield. For many diseases, vaccination protocols are not in place and the excessive use of antibiotics and other chemicals is of substantial concern. A more sustainable disease control strategy to protect fish and shellfish from (re-)emerging diseases could be achieved by introduction or augmentation of beneficial microbes. To establish and maintain a 'healthy' fish microbiome, a fundamental understanding of the diversity and temporal-spatial dynamics of fish-associated microbial communities and their impact on growth and health of their aquatic hosts is required. This review describes insights in the diversity and functions of the fish bacterial communities elucidated with next-generation sequencing and discusses the potential of the microbes to mitigate (re-)emerging diseases in aquaculture. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  10. Does functional redundancy stabilize fish communities?

    DEFF Research Database (Denmark)

    Rice, Jake; Daan, Niels; Gislason, Henrik

    2012-01-01

    Functional redundancy is a community property thought to contribute to ecosystem resilience. It is argued that trophic (or other) functional groups with more species have more linkages and opportunities to buffer variation in abundance of individual species. We explored this concept with a 30‐year...... time‐series of data on 83 species sampled in the International Bottom Trawl Survey. Our results were consistent with the hypothesis that functional redundancy leads to more stable (and by inference more resilient) communities. Over the time‐series trophic groups (assigned by diet, size (Lmax) group......, or both factors) with more species had lower coefficients of variation (CVs) in abundance and biomass than did trophic groups with fewer species. These findings are also consistent with Bernoulli’s Law of Large Numbers, a rule that does not require complex ecological and evolutionary processes to produce...

  11. Fishing top predators indirectly affects condition and reproduction in a reef-fish community.

    Science.gov (United States)

    Walsh, S M; Hamilton, S L; Ruttenberg, B I; Donovan, M K; Sandin, S A

    2012-03-01

    To examine the indirect effects of fishing on energy allocation in non-target prey species, condition and reproductive potential were measured for five representative species (two-spot red snapper Lutjanus bohar, arc-eye hawkfish Paracirrhites arcatus, blackbar devil Plectroglyphidodon dickii, bicolour chromis Chromis margaritifer and whitecheek surgeonfish Acanthurus nigricans) from three reef-fish communities with different levels of fishing and predator abundance in the northern Line Islands, central Pacific Ocean. Predator abundance differed by five to seven-fold among islands, and despite no clear differences in prey abundance, differences in prey condition and reproductive potential among islands were found. Body condition (mean body mass adjusted for length) was consistently lower at sites with higher predator abundance for three of the four prey species. Mean liver mass (adjusted for total body mass), an indicator of energy reserves, was also lower at sites with higher predator abundance for three of the prey species and the predator. Trends in reproductive potential were less clear. Mean gonad mass (adjusted for total body mass) was high where predator abundance was high for only one of the three species in which it was measured. Evidence of consistently low prey body condition and energy reserves in a diverse suite of species at reefs with high predator abundance suggests that fishing may indirectly affect non-target prey-fish populations through changes in predation and predation risk. © 2012 The Authors. Journal of Fish Biology © 2012 The Fisheries Society of the British Isles.

  12. Adaptive Evolution of CENP-A in Percid Fishes

    Directory of Open Access Journals (Sweden)

    Harriet N. A. Abbey

    2015-07-01

    Full Text Available Centromeric protein A (CENP-A is the epigenetic determinant of centromeres. This protein has been shown to be adaptively evolving in a number of animal and plant species. In a previous communication we were able to demonstrate that signs of adaptive evolution were detected in the comparison of CENP-A sequences from three percid fish species. In this study we isolated the CENP-A gene from eight additional species from the Percidae family. With these sequences and those previously obtained, we carried out a more robust statistical analysis of codon specific positive selection in CENP-A coding sequences of eleven percid species. We were able to demonstrate that at least two amino acid positions within the N-terminal tail are under strong positive selection and that one of these positions is potentially a substrate for phosphorylation. While nonsynonymous substitutions were detected in the histone fold domain, these were not statistically supported as resulting from positive selection.

  13. Functionally diverse reef-fish communities ameliorate coral disease.

    Science.gov (United States)

    Raymundo, Laurie J; Halford, Andrew R; Maypa, Aileen P; Kerr, Alexander M

    2009-10-06

    Coral reefs, the most diverse of marine ecosystems, currently experience unprecedented levels of degradation. Diseases are now recognized as a major cause of mortality in reef-forming corals and are complicit in phase shifts of reef ecosystems to algal-dominated states worldwide. Even so, factors contributing to disease occurrence, spread, and impact remain poorly understood. Ecosystem resilience has been linked to the conservation of functional diversity, whereas overfishing reduces functional diversity through cascading, top-down effects. Hence, we tested the hypothesis that reefs with trophically diverse reef fish communities have less coral disease than overfished reefs. We surveyed reefs across the central Philippines, including well-managed marine protected areas (MPAs), and found that disease prevalence was significantly negatively correlated with fish taxonomic diversity. Further, MPAs had significantly higher fish diversity and less disease than unprotected areas. We subsequently investigated potential links between coral disease and the trophic components of fish diversity, finding that only the density of coral-feeding chaetodontid butterflyfishes, seldom targeted by fishers, was positively associated with disease prevalence. These previously uncharacterized results are supported by a second large-scale dataset from the Great Barrier Reef. We hypothesize that members of the charismatic reef-fish family Chaetodontidae are major vectors of coral disease by virtue of their trophic specialization on hard corals and their ecological release in overfished areas, particularly outside MPAs.

  14. Trophic interactions between native and introduced fish species in a littoral fish community.

    Science.gov (United States)

    Monroy, M; Maceda-Veiga, A; Caiola, N; De Sostoa, A

    2014-11-01

    The trophic interactions between 15 native and two introduced fish species, silverside Odontesthes bonariensis and rainbow trout Oncorhynchus mykiss, collected in a major fishery area at Lake Titicaca were explored by integrating traditional ecological knowledge and stable-isotope analyses (SIA). SIA suggested the existence of six trophic groups in this fish community based on δ(13)C and δ(15)N signatures. This was supported by ecological evidence illustrating marked spatial segregation between groups, but a similar trophic level for most of the native groups. Based on Bayesian ellipse analyses, niche overlap appeared to occur between small O. bonariensis (<90 mm) and benthopelagic native species (31.6%), and between the native pelagic killifish Orestias ispi and large O. bonariensis (39%) or O. mykiss (19.7%). In addition, Bayesian mixing models suggested that O. ispi and epipelagic species are likely to be the main prey items for the two introduced fish species. This study reveals a trophic link between native and introduced fish species, and demonstrates the utility of combining both SIA and traditional ecological knowledge to understand trophic relationships between fish species with similar feeding habits. © 2014 The Fisheries Society of the British Isles.

  15. Helminth communities of four commercially important fish species from Chetumal Bay, Mexico.

    Science.gov (United States)

    Aguirre-Macedo, M L; Vidal-Martínez, V M; González-Solís, D; Caballero, P I

    2007-03-01

    The relative importance of ecology and evolution as factors determining species richness and composition of the helminth communities of fish is a matter of current debate. Theoretical studies use host-parasite lists, but these do not include studies on a temporal or spatial scale. Local environmental conditions and host biological characteristics are shown to influence helminth species richness and composition in four fish species (Eugerres plumieri, Hexanematichthys assimilis, Oligoplites saurus, and Scomberomorus maculatus) in Chetumal Bay, Mexico. With the exception of H. assimilis, the helminth communities had not been previously studied and possible associations between environmental and host biological characteristics as factors determining helminth species richness and composition using redundancy analysis (RDA) are described. Thirty-four helminth species are identified, with the highest number of species (19 total (mean = 6.3 +/- 2.1)) and the lowest (9 (4.0 +/- 1.0)) occurring in H. assimilis and S. maculatus, respectively. The larval nematodes Contracaecum sp. and Pseudoterranova sp. were not only the helminth species shared by all four host species but also were the most prevalent and abundant. Statistical associations between helminth community parameters and local ecological variables such as host habitat use, feeding habits, mobility, and time of residence in coastal lagoons are identified. Phylogeny is important because it clearly separates all four host species by their specialist parasites, although specific habitat and feeding habits also significantly influence the differentiation between the four fish species.

  16. [Effects of submarine topography and water depth on distribution of pelagic fish community in minnan-taiwan bank fishing ground].

    Science.gov (United States)

    Fang, Shuimei; Yang, Shengyun; Zhang, Chengmao; Zhu, Jinfu

    2002-11-01

    According to the fishing record of the light-seine information vessel in Minnan-Taiwan bank ground during 1989 to 1999, the effects of submarine topography and water depth on distribution of pelagic fish community in Minnan-Taiwan bank fishing ground was studied. The results showed that the pelagic fish distributed concentratively, while the submarine topography and water depth varied widely, but in different fishing regions, the distribution of pelagic fishes was uneven. The distribution of fishing yield increased from north to south, and closed up from sides of the bank to south or north in the regions. Pelagic fish distributed mainly in mixed water in the southern Taiwan Strait, and in warm water in the Taiwan Strait. The central fishing grounds were at high salt regions. Close gathering regions of pelagic fish or central fishing ground would be varied with the seasonal variation of mixed water in the southern Taiwan Strait and warm water in the Taiwan Strait. Central fishing ground was not only related to submarine topography and water depth, but also related to wind direction, wind-power and various water systems. In the fishing ground, the gathering depth of pelagic fish was 30-60 m in spring and summer, and 40-80 m in autumn and winter.

  17. Vertebrate Genome Evolution in the Light of Fish Cytogenomics and rDNAomics

    Science.gov (United States)

    Howell, W. Mike

    2018-01-01

    To understand the cytogenomic evolution of vertebrates, we must first unravel the complex genomes of fishes, which were the first vertebrates to evolve and were ancestors to all other vertebrates. We must not forget the immense time span during which the fish genomes had to evolve. Fish cytogenomics is endowed with unique features which offer irreplaceable insights into the evolution of the vertebrate genome. Due to the general DNA base compositional homogeneity of fish genomes, fish cytogenomics is largely based on mapping DNA repeats that still represent serious obstacles in genome sequencing and assembling, even in model species. Localization of repeats on chromosomes of hundreds of fish species and populations originating from diversified environments have revealed the biological importance of this genomic fraction. Ribosomal genes (rDNA) belong to the most informative repeats and in fish, they are subject to a more relaxed regulation than in higher vertebrates. This can result in formation of a literal ‘rDNAome’ consisting of more than 20,000 copies with their high proportion employed in extra-coding functions. Because rDNA has high rates of transcription and recombination, it contributes to genome diversification and can form reproductive barrier. Our overall knowledge of fish cytogenomics grows rapidly by a continuously increasing number of fish genomes sequenced and by use of novel sequencing methods improving genome assembly. The recently revealed exceptional compositional heterogeneity in an ancient fish lineage (gars) sheds new light on the compositional genome evolution in vertebrates generally. We highlight the power of synergy of cytogenetics and genomics in fish cytogenomics, its potential to understand the complexity of genome evolution in vertebrates, which is also linked to clinical applications and the chromosomal backgrounds of speciation. We also summarize the current knowledge on fish cytogenomics and outline its main future avenues. PMID

  18. Repeated and Widespread Evolution of Bioluminescence in Marine Fishes.

    Directory of Open Access Journals (Sweden)

    Matthew P Davis

    Full Text Available Bioluminescence is primarily a marine phenomenon with 80% of metazoan bioluminescent genera occurring in the world's oceans. Here we show that bioluminescence has evolved repeatedly and is phylogenetically widespread across ray-finned fishes. We recover 27 independent evolutionary events of bioluminescence, all among marine fish lineages. This finding indicates that bioluminescence has evolved many more times than previously hypothesized across fishes and the tree of life. Our exploration of the macroevolutionary patterns of bioluminescent lineages indicates that the present day diversity of some inshore and deep-sea bioluminescent fish lineages that use bioluminescence for communication, feeding, and reproduction exhibit exceptional species richness given clade age. We show that exceptional species richness occurs particularly in deep-sea fishes with intrinsic bioluminescent systems and both shallow water and deep-sea lineages with luminescent systems used for communication.

  19. Evolution of the EOSDIS Data User Communities

    Science.gov (United States)

    Krupp, B. M.; Murphy, K. J.; Wanchoo, L.; Chang, H.

    2011-12-01

    Since NASA's EOS Terra platform began operations in early FY2000, data centers affiliated with the EOS Data and Information System (EOSDIS) have distributed over 12.8 Petabytes (PB) and 1.2 billion files of data to over 2.3 million distinct users through the end of FY2010. Metrics on data ingest, archive, and distribution have been collected throughout the EOS era by different automated systems. The functionality of these systems has improved over the years, allowing more types of metrics analyses to be made with greater precision. The ESDIS Metrics System (EMS) replaced the earlier ESDIS Data Gathering and Reporting System (EDGRS) in FY2005. Since then it has collected increasingly more accurate information about data users obtaining products from the many EOSDIS data centers. The information allows characterization of the various EOSDIS user communities, and enables studies of how these communities have changed over time. User information obtained when an order is placed, or products are downloaded from a data center's FTP site, include the user's IP host (or IP address) and email address. The EMS system is able to resolve most IP addresses to specific domains. Combined with science discipline information associated with the data products themselves, users and data distributions to them can be characterized in a number of ways, including by countries, disciplines (e.g. Atmosphere, Ocean, Land), and [most readily for the United States] affiliations (Government, Education, Non-profit, or Commercial). The purpose of this investigation is to analyze patterns of data distributions within the different user groups mentioned above and to trace their evolution over time. Results show, for example, that the number of foreign users has increased greatly over the years, as has the number of countries receiving EOSDIS data products. These kinds of studies can be very useful to the various data centers. By gaining a better understanding of how their user communities are

  20. Accounting for Incomplete Species Detection in Fish Community Monitoring

    Energy Technology Data Exchange (ETDEWEB)

    McManamay, Ryan A [ORNL; Orth, Dr. Donald J [Virginia Polytechnic Institute and State University; Jager, Yetta [ORNL

    2013-01-01

    Riverine fish assemblages are heterogeneous and very difficult to characterize with a one-size-fits-all approach to sampling. Furthermore, detecting changes in fish assemblages over time requires accounting for variation in sampling designs. We present a modeling approach that permits heterogeneous sampling by accounting for site and sampling covariates (including method) in a model-based framework for estimation (versus a sampling-based framework). We snorkeled during three surveys and electrofished during a single survey in suite of delineated habitats stratified by reach types. We developed single-species occupancy models to determine covariates influencing patch occupancy and species detection probabilities whereas community occupancy models estimated species richness in light of incomplete detections. For most species, information-theoretic criteria showed higher support for models that included patch size and reach as covariates of occupancy. In addition, models including patch size and sampling method as covariates of detection probabilities also had higher support. Detection probability estimates for snorkeling surveys were higher for larger non-benthic species whereas electrofishing was more effective at detecting smaller benthic species. The number of sites and sampling occasions required to accurately estimate occupancy varied among fish species. For rare benthic species, our results suggested that higher number of occasions, and especially the addition of electrofishing, may be required to improve detection probabilities and obtain accurate occupancy estimates. Community models suggested that richness was 41% higher than the number of species actually observed and the addition of an electrofishing survey increased estimated richness by 13%. These results can be useful to future fish assemblage monitoring efforts by informing sampling designs, such as site selection (e.g. stratifying based on patch size) and determining effort required (e.g. number of

  1. Fishing-induced evolution of growth: concepts, mechanisms and the empirical evidence

    Czech Academy of Sciences Publication Activity Database

    Enberg, K.; Jørgensen, C.; Dunlop, E. S.; Varpe, Ø.; Boukal S., David; Baulier, L.; Eliassen, S.; Heino, M.

    2012-01-01

    Roč. 33, č. 1 (2012), s. 1-25 ISSN 0173-9565 Institutional research plan: CEZ:AV0Z50070508 Keywords : fisheries -induced evolution * fishing-induced evolution * growth Subject RIV: ED - Physiology Impact factor: 2.561, year: 2012 http://onlinelibrary.wiley.com/doi/10.1111/j.1439-0485.2011.00460.x/pdf

  2. Assessment of the pelagic fish populations using CEN multi-mesh gillnets: consequences for the characterization of the fish communities

    Directory of Open Access Journals (Sweden)

    C. Deceliere-Vergès

    2008-01-01

    Full Text Available The contribution of CEN standard pelagic nets to the assessment of fish communities is tested by comparing three metrics (species composition, species abundance, and size structures measured in accordance with the standard (i.e. using benthic nets only to those calculated from the total effort (i.e. including pelagic nets. Hydroacoustic surveys were used simultaneously to assess fish densities in the pelagic habitat. The results show that in most cases the pelagic nets did not provide any extra information about these three metrics. However, their inclusion in the calculation of CPUE and size structures may affect the picture of the fish communities, especially in lakes containing salmonid populations. This study highlights the need to sample pelagic fish when assessing fish communities in order to determine lake quality.

  3. A Genomic Survey of SCPP Family Genes in Fishes Provides Novel Insights into the Evolution of Fish Scales.

    Science.gov (United States)

    Lv, Yunyun; Kawasaki, Kazuhiko; Li, Jia; Li, Yanping; Bian, Chao; Huang, Yu; You, Xinxin; Shi, Qiong

    2017-11-16

    The family of secretory calcium-binding phosphoproteins (SCPPs) have been considered vital to skeletal tissue mineralization. However, most previous SCPP studies focused on phylogenetically distant animals but not on those closely related species. Here we provide novel insights into the coevolution of SCPP genes and fish scales in 10 species from Otophysi . According to their scale phenotypes, these fishes can be divided into three groups, i.e., scaled, sparsely scaled, and scaleless. We identified homologous SCPP genes in the genomes of these species and revealed an absence of some SCPP members in some genomes, suggesting an uneven evolutionary history of SCPP genes in fishes. In addition, most of these SCPP genes, with the exception of SPP1 , individually form one or two gene cluster(s) on each corresponding genome. Furthermore, we constructed phylogenetic trees using maximum likelihood method to estimate their evolution. The phylogenetic topology mostly supports two subclasses in some species, such as Cyprinus carpio , Sinocyclocheilus anshuiensis , S. grahamin , and S. rhinocerous , but not in the other examined fishes. By comparing the gene structures of recently reported candidate genes, SCPP1 and SCPP5 , for determining scale phenotypes, we found that the hypothesis is suitable for Astyanax mexicanus , but denied by S. anshuiensis , even though they are both sparsely scaled for cave adaptation. Thus, we conclude that, although different fish species display similar scale phenotypes, the underlying genetic changes however might be diverse. In summary, this paper accelerates the recognition of the SCPP family in teleosts for potential scale evolution.

  4. Distance from a fishing community explains fish abundance in a no-take zone with weak compliance.

    Science.gov (United States)

    Advani, Sahir; Rix, Laura N; Aherne, Danielle M; Alwany, Magdy A; Bailey, David M

    2015-01-01

    There are numerous examples of no-take marine reserves effectively conserving fish stocks within their boundaries. However, no-take reserves can be rendered ineffective and turned into 'paper parks' through poor compliance and weak enforcement of reserve regulations. Long-term monitoring is thus essential to assess the effectiveness of marine reserves in meeting conservation and management objectives. This study documents the present state of the 15-year old no-take zone (NTZ) of South El Ghargana within the Nabq Managed Resource Protected Area, South Sinai, Egyptian Red Sea. Previous studies credited willing compliance by the local fishing community for the increased abundances of targeted fish within the designated NTZ boundaries compared to adjacent fished or take-zones. We compared benthic habitat and fish abundance within the NTZ and the adjacent take sites open to fishing, but found no significant effect of the reserve. Instead, the strongest evidence was for a simple negative relationship between fishing pressure and distance from the closest fishing village. The abundance of targeted piscivorous fish increased significantly with increasing distance from the village, while herbivorous fish showed the opposite trend. This gradient was supported by a corresponding negative correlation between the amount of discarded fishing gear observed on the reef and increasing distance from the village. Discarded fishing gear within the NTZ suggested decreased compliance with the no-take regulations. Our findings indicate that due to non-compliance the no-take reserve is no longer functioning effectively, despite its apparent initial successes and instead a gradient of fishing pressure exists with distance from the nearest fishing community.

  5. Distance from a fishing community explains fish abundance in a no-take zone with weak compliance.

    Directory of Open Access Journals (Sweden)

    Sahir Advani

    Full Text Available There are numerous examples of no-take marine reserves effectively conserving fish stocks within their boundaries. However, no-take reserves can be rendered ineffective and turned into 'paper parks' through poor compliance and weak enforcement of reserve regulations. Long-term monitoring is thus essential to assess the effectiveness of marine reserves in meeting conservation and management objectives. This study documents the present state of the 15-year old no-take zone (NTZ of South El Ghargana within the Nabq Managed Resource Protected Area, South Sinai, Egyptian Red Sea. Previous studies credited willing compliance by the local fishing community for the increased abundances of targeted fish within the designated NTZ boundaries compared to adjacent fished or take-zones. We compared benthic habitat and fish abundance within the NTZ and the adjacent take sites open to fishing, but found no significant effect of the reserve. Instead, the strongest evidence was for a simple negative relationship between fishing pressure and distance from the closest fishing village. The abundance of targeted piscivorous fish increased significantly with increasing distance from the village, while herbivorous fish showed the opposite trend. This gradient was supported by a corresponding negative correlation between the amount of discarded fishing gear observed on the reef and increasing distance from the village. Discarded fishing gear within the NTZ suggested decreased compliance with the no-take regulations. Our findings indicate that due to non-compliance the no-take reserve is no longer functioning effectively, despite its apparent initial successes and instead a gradient of fishing pressure exists with distance from the nearest fishing community.

  6. When does fishing lead to more fish? Community consequences of bottom trawl fisheries in demersal food webs

    NARCIS (Netherlands)

    Denderen, van P.D.; Kooten, van T.; Rijnsdorp, A.D.

    2013-01-01

    Bottom trawls are a globally used fishing gear that physically disturb the seabed and kill non-target organisms, including those that are food for the targeted fish species. There are indications that ensuing changes to the benthic invertebrate community may increase the availability of food and

  7. Marine protected areas increase temporal stability of community structure, but not density or diversity, of tropical seagrass fish communities.

    Directory of Open Access Journals (Sweden)

    Elisa Alonso Aller

    Full Text Available Marine protected areas (MPAs have been shown to increase long-term temporal stability of fish communities and enhance ecosystem resilience to anthropogenic disturbance. Yet, the potential ability of MPAs to buffer effects of environmental variability at shorter time scales remains widely unknown. In the tropics, the yearly monsoon cycle is a major natural force affecting marine organisms in tropical regions, and its timing and severity are predicted to change over the coming century, with potentially severe effects on marine organisms, ecosystems and ecosystem services. Here, we assessed the ability of MPAs to buffer effects of monsoon seasonality on seagrass-associated fish communities, using a field survey in two MPAs (no-take zones and two unprotected (open-access sites around Zanzibar (Tanzania. We assessed the temporal stability of fish density and community structure within and outside MPAs during three monsoon seasons in 2014-2015, and investigated several possible mechanisms that could regulate temporal stability. Our results show that MPAs did not affect fish density and diversity, but that juvenile fish densities were temporally more stable within MPAs. Second, fish community structure was more stable within MPAs for juvenile and adult fish, but not for subadult fish or the total fish community. Third, the observed effects may be due to a combination of direct and indirect (seagrass-mediated effects of seasonality and, potentially, fluctuating fishing pressure outside MPAs. In summary, these MPAs may not have the ability to enhance fish density and diversity and to buffer effects of monsoon seasonality on the whole fish community. However, they may increase the temporal stability of certain groups, such as juvenile fish. Consequently, our results question whether MPAs play a general role in the maintenance of biodiversity and ecosystem functioning under changing environmental conditions in tropical seagrass fish communities.

  8. Evolution properties of the community members for dynamic networks

    Science.gov (United States)

    Yang, Kai; Guo, Qiang; Li, Sheng-Nan; Han, Jing-Ti; Liu, Jian-Guo

    2017-03-01

    The collective behaviors of community members for dynamic social networks are significant for understanding evolution features of communities. In this Letter, we empirically investigate the evolution properties of the new community members for dynamic networks. Firstly, we separate data sets into different slices, and analyze the statistical properties of new members as well as communities they joined in for these data sets. Then we introduce a parameter φ to describe community evolution between different slices and investigate the dynamic community properties of the new community members. The empirical analyses for the Facebook, APS, Enron and Wiki data sets indicate that both the number of new members and joint communities increase, the ratio declines rapidly and then becomes stable over time, and most of the new members will join in the small size communities that is s ≤ 10. Furthermore, the proportion of new members in existed communities decreases firstly and then becomes stable and relatively small for these data sets. Our work may be helpful for deeply understanding the evolution properties of community members for social networks.

  9. A new freshwater biodiversity indicator based on fish community assemblages.

    Directory of Open Access Journals (Sweden)

    Joanne Clavel

    Full Text Available Biodiversity has reached a critical state. In this context, stakeholders need indicators that both provide a synthetic view of the state of biodiversity and can be used as communication tools. Using river fishes as model, we developed community indicators that aim at integrating various components of biodiversity including interactions between species and ultimately the processes influencing ecosystem functions. We developed indices at the species level based on (i the concept of specialization directly linked to the niche theory and (ii the concept of originality measuring the overall degree of differences between a species and all other species in the same clade. Five major types of originality indices, based on phylogeny, habitat-linked and diet-linked morphology, life history traits, and ecological niche were analyzed. In a second step, we tested the relationship between all biodiversity indices and land use as a proxy of human pressures. Fish communities showed no significant temporal trend for most of these indices, but both originality indices based on diet- and habitat- linked morphology showed a significant increase through time. From a spatial point of view, all indices clearly singled out Corsica Island as having higher average originality and specialization. Finally, we observed that the originality index based on niche traits might be used as an informative biodiversity indicator because we showed it is sensitive to different land use classes along a landscape artificialization gradient. Moreover, its response remained unchanged over two other land use classifications at the global scale and also at the regional scale.

  10. Spatial Structure and Temporal Variation of Fish Communities in the Upper Mississippi River System

    National Research Council Canada - National Science Library

    Chick, John H; Ickes, Brian S; Pegg, Mark A; Barko, Valerie A; Hrabik, Robert A; Herzog, David P

    2005-01-01

    Variation in community composition (presence/absence data) and structure (relative abundance) of Upper Mississippi River fishes was assessed using data from the Long Term Resource Monitoring Program...

  11. Changes in the fish community and water quality during seven years of stocking piscivorous fish in a shallow lake

    DEFF Research Database (Denmark)

    Skov, Christian; Perrow, M.R.; Berg, Søren

    2002-01-01

    evaluated between predatory fish and potential prey and between zooplanktivorous or benthivorous fish and water quality parameters. In addition, potential consumption of piscivorous fishes was calculated. 3. The density of fish feeding on larger zooplankton or benthos (roach >15 cm, crucian carp >15 cm......1. Piscivores (annual stocking of 1000 individuals ha(-1) of 0+ pike and a single stocking of 30 kg ha(-1) of large 20-30 cm perch) were stocked in seven consecutive years in a shallow eutrophic lake in Denmark. The stocking programme aimed at changing food-web structure by reducing...... zooplanktivorous and benthivorous fish, with resultant effects on lower trophic levels and ultimately water quality. 2. The fish community and water quality parameters (Secchi depth, concentrations of total phosphorus, chlorophyll a and suspended solids) were monitored between 1996 and 2000 and relationships were...

  12. Rebuilding fish communities: the ghost of fisheries past and the virtue of patience.

    Science.gov (United States)

    Collie, Jeremy; Rochet, Marie-Joëlle; Bell, Richard

    2013-03-01

    The ecosystem approach to management requires the status of individual species to be considered in a community context. We conducted a comparative ecosystem analysis of the Georges Bank and North Sea fish communities to determine the extent to which biological diversity is restored when fishing pressure is reduced. First, fishing mortality estimates were combined to quantify the community-level intensity and selectivity of fishing pressure. Second, standardized bottom-trawl survey data were used to investigate the temporal trends in community metrics. Third, a size-based, multispecies model (LeMans) was simulated to test the response of community metrics to both hypothetical and observed changes in fishing pressure in the two communities. These temperate North Atlantic fish communities have much in common, including a history of overfishing. In recent decades fishing pressure has been reduced, and some species have started to rebuild. The Georges Bank fishery has been more selective, and fishing pressure was reduced sooner. The two communities have similar levels of size diversity and biomass per unit area, but fundamentally different community structure. The North Sea is dominated by smaller species and has lower evenness than Georges Bank. These fundamental differences in community structure are not explained by recent fishing patterns. The multispecies model was able to predict the observed changes in community metrics better on Georges Bank, where rebuilding is more apparent than in the North Sea. Model simulations predicted hysteresis in rebuilding community metrics toward their unfished levels, particularly in the North Sea. Species in the community rebuild at different rates, with smaller prey species outpacing their large predators and overshooting their pre-exploitation abundances. This indirect effect of predator release delays the rebuilding of community structure and biodiversity. Therefore community rebuilding is not just the sum of single

  13. How Are Fishing Patterns and Fishing Communities Responding to Climate Change? A Test Case from the Northwest Atlantic

    Science.gov (United States)

    Young, T.; Fuller, E.; Coleman, K.; Provost, M.; Pinsky, M. L.; St Martin, K.

    2016-02-01

    We know climate is changing and fish are moving in response to those changes. But we understand less about how harvesters are responding to these changes in fish distribution and the ramifications of those changes for fishing communities. Ecological and evolutionary theory suggests that organisms must move, adapt, or die in response to environmental changes, and a related frame may be relevant for human harvesters in the face of climate change. Furthermore, research suggests that there may be a portfolio effect: a wider diversity of catch may buffer harvesters from some effects of climate change. To get at these questions, we explored changes in fishing patterns among commercial fishing communities in the northeast US from 1997-2014 using NOAA-collected logbook data. We found that communities using more mobile gear (large trawl vessels) demonstrated a greater range of latitudinal shift than communities using any other gear. Latitudinal shift was also inversely related to species diversity of catch and port latitude in those communities: southern communities that caught few species shifted dramatically northward, and northern communities that caught many species did not demonstrate marked latitudinal shifts. Those communities that demonstrated larger latitudinal shifts also demonstrated smaller changes in catch composition than their more stationary counterparts. We also found that vessels are indeed leaving many, but not all, fisheries in this region. These results suggest that harvesters are moving, adapting, and leaving fisheries, and that there does appear to be a portfolio effect, with catch diversity mediating some of these responses. While these changes in fishing patterns cannot all be directly attributed to climate change per se, marine fishes in this region are shifting north rapidly, as is expected under climate change. This study provides a valuable test case for exploring the potential ramifications of climate change on coastal socio-ecological systems.

  14. Seasonal changes in the assembly mechanisms structuring tropical fish communities.

    Science.gov (United States)

    Fitzgerald, Daniel B; Winemiller, Kirk O; Sabaj Pérez, Mark H; Sousa, Leandro M

    2017-01-01

    Despite growing interest in trait-based approaches to community assembly, little attention has been given to seasonal variation in trait distribution patterns. Mobile animals can rapidly mediate influences of environmental factors and species interactions through dispersal, suggesting that the relative importance of different assembly mechanisms can vary over short time scales. This study analyzes seasonal changes in functional trait distributions of tropical fishes in the Xingu River, a major tributary of the Amazon with large predictable temporal variation in hydrologic conditions and species density. Comparison of observed functional diversity revealed that species within wet-season assemblages were more functionally similar than those in dry-season assemblages. Further, species within wet-season assemblages were more similar than random expectations based on null model predictions. Higher functional richness within dry season communities is consistent with increased niche complementarity during the period when fish densities are highest and biotic interactions should be stronger; however, null model tests suggest that stochastic factors or a combination of assembly mechanisms influence dry-season assemblages. These results demonstrate that the relative influence of community assembly mechanisms can vary seasonally in response to changing abiotic conditions, and suggest that studies attempting to infer a single dominant mechanism from functional patterns may overlook important aspects of the assembly process. During the prolonged flood pulse of the wet season, expanded habitat and lower densities of aquatic organisms likely reduce the influence of competition and predation. This temporal shift in the influence of different assembly mechanisms, rather than any single mechanism, may play a large role in maintaining the structure and diversity of tropical rivers and perhaps other dynamic and biodiverse systems. © 2016 by the Ecological Society of America.

  15. [Phytoplankton community in a recreational fishing lake, Brazil].

    Science.gov (United States)

    Matsuzaki, Mayla; Mucci, José Luiz Negrão; Rocha, Aristides Almeida

    2004-10-01

    The assessment of water quality and phytoplankton community in recreational environments allows to setting management programs aiming at preventing potential harm to human health. The purpose of the present study was to describe phytoplankton seasonal changes in a freshwater system and their relation to water quality. The recreational fishing lake is located in the southern area of the city of São Paulo, Brazil. Water samples were collected in three previously selected sites in the lake throughout a year and analyzed regarding floristic composition and physical and chemical parameters. The phytoplankton qualitative analysis revealed 91 taxa distributed among eight classes: Chlorophyceae, Cyanophyceae, Euglenophyceae, Zygnemaphyceae, Bacillariophyceae, Xantophyceae, Dinophyceae, and Chrysophyceae. Some physical and chemical parameters seemed to influence phytoplankton community behavior. Chlorophyceae development was favored by local conditions. Among the species of cyanobacteria identified, Microcystis paniformis, Cylindrospermopsis raciborskii, and Anabaena species were the most important due to their ability to produce toxins, posing a high risk to public health. Some physical and chemical parameters had an impact on the structure of phytoplankton community. The presence of Microcystis paniformis, Cylindrospermopsis raciborskii and Anabaena species indicates toxic potential and likelihood of public health problems unless there is constant monitoring. Further studies are recommended to prevent hazardous effects to the environment and public health.

  16. Community Core Evolution in Mobile Social Networks

    Directory of Open Access Journals (Sweden)

    Hao Xu

    2013-01-01

    Full Text Available Community detection in social networks attracts a lot of attention in the recent years. Existing methods always depict the relationship of two nodes using the temporary connection. However, these temporary connections cannot be fully recognized as the real relationships when the history connections among nodes are considered. For example, a casual visit in Facebook cannot be seen as an establishment of friendship. Hence, our question is the following: how to cluster the real friends in mobile social networks? In this paper, we study the problem of detecting the stable community core in mobile social networks. The cumulative stable contact is proposed to depict the relationship among nodes. The whole process is divided into timestamps. Nodes and their connections can be added or removed at each timestamp, and historical contacts are considered when detecting the community core. Also, community cores can be tracked through the incremental computing, which can help to recognize the evolving of community structure. Empirical studies on real-world social networks demonstrate that our proposed method can effectively detect stable community cores in mobile social networks.

  17. Community core evolution in mobile social networks.

    Science.gov (United States)

    Xu, Hao; Xiao, Weidong; Tang, Daquan; Tang, Jiuyang; Wang, Zhenwen

    2013-01-01

    Community detection in social networks attracts a lot of attention in the recent years. Existing methods always depict the relationship of two nodes using the temporary connection. However, these temporary connections cannot be fully recognized as the real relationships when the history connections among nodes are considered. For example, a casual visit in Facebook cannot be seen as an establishment of friendship. Hence, our question is the following: how to cluster the real friends in mobile social networks? In this paper, we study the problem of detecting the stable community core in mobile social networks. The cumulative stable contact is proposed to depict the relationship among nodes. The whole process is divided into timestamps. Nodes and their connections can be added or removed at each timestamp, and historical contacts are considered when detecting the community core. Also, community cores can be tracked through the incremental computing, which can help to recognize the evolving of community structure. Empirical studies on real-world social networks demonstrate that our proposed method can effectively detect stable community cores in mobile social networks.

  18. Investigating the link between fish community structure and environmental state in deep-time

    Science.gov (United States)

    Sibert, E. C.

    2017-12-01

    In the modern ocean, a bottom-up ecological viewpoint posits that the composition of plankton communities is often a function of ambient oceanographic conditions, including nutrient concentrations and water temperature. Thus, certain plankton species or communities can be associated with specific oceanographic conditions, giving them potential as carriers of paleoceanographic information. Furthermore, consumer groups, such as fish, depend on the structure and composition of these plankton, and therefore different plankton communities will support different types of fish. In addition, fish have their own physiological constraints for surviving in particular environments, such as oxygen demand, and metabolic rate, causing certain clades to be selectively associated with different water mass characteristics. Thus, the relative or absolute abundances of different fish species or groups could shed light on shifting oxygen concentrations, temperature, or primary productivity in the past. To assess whether fish communities have sufficient environmental control to provide paleoceanographic insights, I use a variety of morphological, phylogenetic, and ecological statistical approaches, to correlate modern fish communities from around the world with environmental variables. I then apply these principles to a series of ichthyolith assemblages from the Cretaceous and Cenozoic, across both space and time, to assess whether fish community composition, abundance, or other characteristics can be predictive of ocean temperature or export productivity. I find that while the abundance of fish fossils in deep-sea cores is often, though not always, correlated with certain export production and temperature proxies, community composition appears to vary independently of these variables on long timescales, driven more by evolutionary processes. However, there are distinct differences in contemporary communities in different locations, suggesting that there is potential in using fish

  19. Fish community status in Norwegian lakes in relation to acidification: a comparison between interviews and actual catches by test fishing

    Energy Technology Data Exchange (ETDEWEB)

    Hesthagen, T.; Berger, H.M.; Larsen, B.M. (Norwegian Inst. for Nature Research, Trondheim (Norway)); Rosseland, B.O. (Norwegian Inst. for Water Research, Oslo (Norway))

    1993-01-01

    Inquiries are used to obtain information on fish community status in terms of unchanged, reduced and lost communities, to assess the effects of acidification in lakes. The aim of this paper was to investigate the validity of this method by comparing fish status with actual catches on standard gill net series (CPUE). Data from 230 test fishing incidents comprising 357 stocks of 7 different fish species are presented. We found significant differences in CPUE between perceived fish status categories for brown trout (Salmo trutta), arctic char (Salvelinus alpinus) and perch (Perca fluviatilis), for which sufficient data were available. A discriminant analysis revealed that for stocks reported as unchanged and lost, the predicted membership ranged between 60.0-72.1 % respectively. However, a dominant fraction (50.0-66.7 %) of stocks reported as reduced were assigned as lost. Stocks which have been declining for less than 10 years, had a significantly higher CPUE than stocks which have declined for a longer period of time. Another apparent change in population characteristics was an acidification induced increase in mean weight for fish affected stocks. It is suggested that interviews tend to overestimate the current fish status. This is discussed in relation to a time lag between the damage and the time when it became apparent to fishermen, and rapid decline in population numbers. 26 refs, 2 figs, 4 tabs

  20. Impacts of species introductions on the health of fish communities receiving chronic radionuclide exposures

    International Nuclear Information System (INIS)

    Yankovich, T.L.; Casselman, J.M.; Cornett, R.J.J.

    2006-01-01

    A study was conducted to evaluate the potential impacts of a northern pike introduction on the health of a fish community receiving chronic radionuclide exposure, primarily from 90 Sr. Overall, although significant changes occurred in the community composition and the health of fish populations following the pike introduction, these were not linked to radionuclide dose to fishes. This finding was further supported by assessing the health of forage fishes, which did not significantly change in the pre-versus post-pike fish communities and were comparable in condition to forage fishes inhabiting lakes with background radionuclide levels. Application of such resilient species as 'baseline organisms' can provide a useful tool in the routine monitoring of ecosystems affected by multiple stressors. (author)

  1. Acoustic backscatter models of fish: Gradual or punctuated evolution

    Science.gov (United States)

    Horne, John K.

    2004-05-01

    Sound-scattering characteristics of aquatic organisms are routinely investigated using theoretical and numerical models. Development of the inverse approach by van Holliday and colleagues in the 1970s catalyzed the development and validation of backscatter models for fish and zooplankton. As the understanding of biological scattering properties increased, so did the number and computational sophistication of backscatter models. The complexity of data used to represent modeled organisms has also evolved in parallel to model development. Simple geometric shapes representing body components or the whole organism have been replaced by anatomically accurate representations derived from imaging sensors such as computer-aided tomography (CAT) scans. In contrast, Medwin and Clay (1998) recommend that fish and zooplankton should be described by simple theories and models, without acoustically superfluous extensions. Since van Holliday's early work, how has data and computational complexity influenced accuracy and precision of model predictions? How has the understanding of aquatic organism scattering properties increased? Significant steps in the history of model development will be identified and changes in model results will be characterized and compared. [Work supported by ONR and the Alaska Fisheries Science Center.

  2. Correlated evolution of body and fin morphology in the cichlid fishes.

    Science.gov (United States)

    Feilich, Kara L

    2016-10-01

    Body and fin shapes are chief determinants of swimming performance in fishes. Different configurations of body and fin shapes can suit different locomotor specializations. The success of any configuration is dependent upon the hydrodynamic interactions between body and fins. Despite the importance of body-fin interactions for swimming, there are few data indicating whether body and fin configurations evolve in concert, or whether these structures vary independently. The cichlid fishes are a diverse family whose well-studied phylogenetic relationships make them ideal for the study of macroevolution of ecomorphology. This study measured body, and caudal and median fin morphology from radiographs of 131 cichlid genera, using morphometrics and phylogenetic comparative methods to determine whether these traits exhibit correlated evolution. Partial least squares canonical analysis revealed that body, caudal fin, dorsal fin, and anal fin shapes all exhibited strong correlated evolution consistent with locomotor ecomorphology. Major patterns included the evolution of deep body profiles with long fins, suggestive of maneuvering specialization; and the evolution of narrow, elongate caudal peduncles with concave tails, a combination that characterizes economical cruisers. These results demonstrate that body shape evolution does not occur independently of other traits, but among a suite of other morphological changes that augment locomotor specialization. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

  3. Structure of Caribbean coral reef communities across a large gradient of fish biomass.

    Science.gov (United States)

    Newman, Marah J H; Paredes, Gustavo A; Sala, Enric; Jackson, Jeremy B C

    2006-11-01

    The collapse of Caribbean coral reefs has been attributed in part to historic overfishing, but whether fish assemblages can recover and how such recovery might affect the benthic reef community has not been tested across appropriate scales. We surveyed the biomass of reef communities across a range in fish abundance from 14 to 593 g m(-2), a gradient exceeding that of any previously reported for coral reefs. Increased fish biomass was correlated with an increased proportion of apex predators, which were abundant only inside large marine reserves. Increased herbivorous fish biomass was correlated with a decrease in fleshy algal biomass but corals have not yet recovered.

  4. A model for evolution of overlapping community networks

    Science.gov (United States)

    Karan, Rituraj; Biswal, Bibhu

    2017-05-01

    A model is proposed for the evolution of network topology in social networks with overlapping community structure. Starting from an initial community structure that is defined in terms of group affiliations, the model postulates that the subsequent growth and loss of connections is similar to the Hebbian learning and unlearning in the brain and is governed by two dominant factors: the strength and frequency of interaction between the members, and the degree of overlap between different communities. The temporal evolution from an initial community structure to the current network topology can be described based on these two parameters. It is possible to quantify the growth occurred so far and predict the final stationary state to which the network is likely to evolve. Applications in epidemiology or the spread of email virus in a computer network as well as finding specific target nodes to control it are envisaged. While facing the challenge of collecting and analyzing large-scale time-resolved data on social groups and communities one faces the most basic questions: how do communities evolve in time? This work aims to address this issue by developing a mathematical model for the evolution of community networks and studying it through computer simulation.

  5. A phylogenetic perspective on the evolution of Mediterranean teleost fishes.

    Directory of Open Access Journals (Sweden)

    Christine N Meynard

    Full Text Available The Mediterranean Sea is a highly diverse, highly studied, and highly impacted biogeographic region, yet no phylogenetic reconstruction of fish diversity in this area has been published to date. Here, we infer the timing and geographic origins of Mediterranean teleost species diversity using nucleotide sequences collected from GenBank. We assembled a DNA supermatrix composed of four mitochondrial genes (12S ribosomal DNA, 16S ribosomal DNA, cytochrome c oxidase subunit I and cytochrome b and two nuclear genes (rhodopsin and recombination activating gene I, including 62% of Mediterranean teleost species plus 9 outgroups. Maximum likelihood and Bayesian phylogenetic and dating analyses were calibrated using 20 fossil constraints. An additional 124 species were grafted onto the chronogram according to their taxonomic affinity, checking for the effects of taxonomic coverage in subsequent diversification analyses. We then interpreted the time-line of teleost diversification in light of Mediterranean historical biogeography, distinguishing non-endemic natives, endemics and exotic species. Results show that the major Mediterranean orders are of Cretaceous origin, specifically ~100-80 Mya, and most Perciformes families originated 80-50 Mya. Two important clade origin events were detected. The first at 100-80 Mya, affected native and exotic species, and reflects a global diversification period at a time when the Mediterranean Sea did not yet exist. The second occurred during the last 50 Mya, and is noticeable among endemic and native species, but not among exotic species. This period corresponds to isolation of the Mediterranean from Indo-Pacific waters before the Messinian salinity crisis. The Mediterranean fish fauna illustrates well the assembly of regional faunas through origination and immigration, where dispersal and isolation have shaped the emergence of a biodiversity hotspot.

  6. Environmental monitoring at the La Grande Complex : evolution of fish mercury levels : summary report 1978-2000

    Energy Technology Data Exchange (ETDEWEB)

    Schetagne, R. [Hydro-Quebec, Montreal, PQ (Canada). Direction Barrages et Environnement; Therrien, J.; Lalumiere, R. [Genivar SEC, Montreal, PQ (Canada)

    2003-12-15

    In Northern Quebec, mercury has accumulated since the last ice age as a result of atmospheric fallout from natural sources such as the weathering of rocks in the earth's crust, forest fires and volcanoes, as well as from anthropogenic sources such as coal combustion and waste incineration. Mercury of atmospheric origin exists mainly in inorganic form, not readily assimilated by living organisms. In aquatic environments, it is converted to methylmercury by the bacteria that break down organic matter containing mercury which is readily assimilated by living organisms, travels through the food chain and accumulates in fish. The presence of mercury in the environment poses a potential concern as a result of the toxicity of methylmercury for humans, and especially Inuit communities through fish consumption. At the La Grande complex, mercury levels in the flesh of fish have been monitored since 1978, in both natural and modified environments. The main goals of the monitoring are to determine the temporal evolution of the increase in fish mercury levels in environments modified by the development of the La Grande hydroelectric complex, inform fish consumers and allow a comparison of the impacts actually measured with the effects predicted in the impact assessment studies. This report summarized results obtained between 1978 and 2000 at the La Grande complex. It included information presented in previous summary reports or articles as well as data from special studies and other hydroelectric projects. Specifically, the report provided a description of the study area and the hydroelectric developments; the rationale for the monitoring and the objectives; the prediction of the development's impacts; the methods used for the study; and, the results obtained in natural and modified environments. The main lessons learned and recommendations were also presented. 153 refs., 20 tabs., 45 figs., 1 appendix.

  7. Environmental monitoring at the La Grande Complex : evolution of fish mercury levels : summary report 1978-2000

    International Nuclear Information System (INIS)

    Schetagne, R.

    2003-12-01

    In Northern Quebec, mercury has accumulated since the last ice age as a result of atmospheric fallout from natural sources such as the weathering of rocks in the earth's crust, forest fires and volcanoes, as well as from anthropogenic sources such as coal combustion and waste incineration. Mercury of atmospheric origin exists mainly in inorganic form, not readily assimilated by living organisms. In aquatic environments, it is converted to methylmercury by the bacteria that break down organic matter containing mercury which is readily assimilated by living organisms, travels through the food chain and accumulates in fish. The presence of mercury in the environment poses a potential concern as a result of the toxicity of methylmercury for humans, and especially Inuit communities through fish consumption. At the La Grande complex, mercury levels in the flesh of fish have been monitored since 1978, in both natural and modified environments. The main goals of the monitoring are to determine the temporal evolution of the increase in fish mercury levels in environments modified by the development of the La Grande hydroelectric complex, inform fish consumers and allow a comparison of the impacts actually measured with the effects predicted in the impact assessment studies. This report summarized results obtained between 1978 and 2000 at the La Grande complex. It included information presented in previous summary reports or articles as well as data from special studies and other hydroelectric projects. Specifically, the report provided a description of the study area and the hydroelectric developments; the rationale for the monitoring and the objectives; the prediction of the development's impacts; the methods used for the study; and, the results obtained in natural and modified environments. The main lessons learned and recommendations were also presented. 153 refs., 20 tabs., 45 figs., 1 appendix.

  8. Impacts of species introductions on the health of fish communities receiving chronic radionuclide inputs

    International Nuclear Information System (INIS)

    Yankovich, T.L.; Casselman, J.M.; Cornett, R.J.J.

    2004-01-01

    There is widespread interest in gaining further understanding of the relative influences of multiple stressors on aquatic ecosystem structure and function. To address this, work has been done to evaluate the effects of the introduction of an efficient predator (northern pike) on a fish community in a small lake (Perch Lake, Chalk River, Ontario) receiving chronic inputs of radionuclides over a 50-year period. In general, large changes in fish community structure, with corresponding changes in fish health, occurred following the pike introduction. For example, several forage fish species were extirpated from the lake and densities of the past top predator, yellow perch, became greatly reduced, likely due to predation by northern pike and/or other species in the lake. The reduced perch numbers appeared to alleviate an ecological bottleneck, which resulted in significant increases in brown bullhead densities to levels that were much higher than observed in other water bodies under typical conditions. Corresponding changes in the health of the Perch Lake fish community could also be detected, and included decreased fish diversity, shifts in fish community size structure to smaller body sizes, significant reductions in fish condition factors, reduced hepato-somatic indices, depletion of fish internal fat reserves, hardening of the gastrointestinal tract, resorption of gonadal material, degradation of muscle tissue, emaciation and ultimately, mortality of northern pike and brown bullheads. Evaluation of data indicated that female fishes responded more quickly than did males in terms of condition loss, likely due to their higher energetic requirements. In addition, although pike and bullheads were detrimentally affected by the pike introduction, health of forage fish species, such as pumpkinseeds, did not appear to be greatly influenced. No clear relationships existed between fish community health and exposure to radionuclides in the lake. (author)

  9. Repeated evolution of amphibious behavior in fish and its implications for the colonization of novel environments.

    Science.gov (United States)

    Ord, Terry J; Cooke, Georgina M

    2016-08-01

    We know little about on how frequently transitions into new habitats occur, especially the colonization of novel environments that are the most likely to instigate adaptive evolution. One of the most extreme ecological transitions has been the shift in habitat associated with the move from water to land by amphibious fish. We provide the first phylogenetic investigation of these transitions for living fish. Thirty-three families have species reported to be amphibious and these are likely independent evolutionary origins of fish emerging onto land. Phylogenetic reconstructions of closely related taxa within one of these families, the Blenniidae, inferred as many as seven convergences on a highly amphibious lifestyle. Taken together, there appear to be few constraints on fish emerging onto land given amphibious behavior has evolved repeatedly many times across ecologically diverse families. The colonization of novel habitats by other taxa resulting in less dramatic changes in environment should be equally, if not, more frequent in nature, providing an important prerequisite for subsequent adaptive differentiation. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

  10. Invasive lionfish had no measurable effect on prey fish community structure across the Belizean Barrier Reef.

    Science.gov (United States)

    Hackerott, Serena; Valdivia, Abel; Cox, Courtney E; Silbiger, Nyssa J; Bruno, John F

    2017-01-01

    Invasive lionfish are assumed to significantly affect Caribbean reef fish communities. However, evidence of lionfish effects on native reef fishes is based on uncontrolled observational studies or small-scale, unrepresentative experiments, with findings ranging from no effect to large effects on prey density and richness. Moreover, whether lionfish affect populations and communities of native reef fishes at larger, management-relevant scales is unknown. The purpose of this study was to assess the effects of lionfish on coral reef prey fish communities in a natural complex reef system. We quantified lionfish and the density, richness, and composition of native prey fishes (0-10 cm total length) at sixteen reefs along ∼250 km of the Belize Barrier Reef from 2009 to 2013. Lionfish invaded our study sites during this four-year longitudinal study, thus our sampling included fish community structure before and after our sites were invaded, i.e., we employed a modified BACI design. We found no evidence that lionfish measurably affected the density, richness, or composition of prey fishes. It is possible that higher lionfish densities are necessary to detect an effect of lionfish on prey populations at this relatively large spatial scale. Alternatively, negative effects of lionfish on prey could be small, essentially undetectable, and ecologically insignificant at our study sites. Other factors that influence the dynamics of reef fish populations including reef complexity, resource availability, recruitment, predation, and fishing could swamp any effects of lionfish on prey populations.

  11. Invasive lionfish had no measurable effect on prey fish community structure across the Belizean Barrier Reef

    Directory of Open Access Journals (Sweden)

    Serena Hackerott

    2017-05-01

    Full Text Available Invasive lionfish are assumed to significantly affect Caribbean reef fish communities. However, evidence of lionfish effects on native reef fishes is based on uncontrolled observational studies or small-scale, unrepresentative experiments, with findings ranging from no effect to large effects on prey density and richness. Moreover, whether lionfish affect populations and communities of native reef fishes at larger, management-relevant scales is unknown. The purpose of this study was to assess the effects of lionfish on coral reef prey fish communities in a natural complex reef system. We quantified lionfish and the density, richness, and composition of native prey fishes (0–10 cm total length at sixteen reefs along ∼250 km of the Belize Barrier Reef from 2009 to 2013. Lionfish invaded our study sites during this four-year longitudinal study, thus our sampling included fish community structure before and after our sites were invaded, i.e., we employed a modified BACI design. We found no evidence that lionfish measurably affected the density, richness, or composition of prey fishes. It is possible that higher lionfish densities are necessary to detect an effect of lionfish on prey populations at this relatively large spatial scale. Alternatively, negative effects of lionfish on prey could be small, essentially undetectable, and ecologically insignificant at our study sites. Other factors that influence the dynamics of reef fish populations including reef complexity, resource availability, recruitment, predation, and fishing could swamp any effects of lionfish on prey populations.

  12. Toxin gene determination and evolution in scorpaenoid fish.

    Science.gov (United States)

    Chuang, Po-Shun; Shiao, Jen-Chieh

    2014-09-01

    In this study, we determine the toxin genes from both cDNA and genomic DNA of four scorpaenoid fish and reconstruct their evolutionary relationship. The deduced protein sequences of the two toxin subunits in Sebastapistes strongia, Scorpaenopsis oxycephala, and Sebastiscus marmoratus are about 700 amino acid, similar to the sizes of the stonefish (Synanceia horrida, and Synanceia verrucosa) and lionfish (Pterois antennata and Pterois volitans) toxins previously published. The intron positions are highly conserved among these species, which indicate the applicability of gene finding by using genomic DNA template. The phylogenetic analysis shows that the two toxin subunits were duplicated prior to the speciation of Scorpaenoidei. The precedence of the gene duplication over speciation indicates that the toxin genes may be common to the whole family of Scorpaeniform. Furthermore, one additional toxin gene has been determined in the genomic DNA of Dendrochirus zebra. The phylogenetic analysis suggests that an additional gene duplication occurred before the speciation of the lionfish (Pteroinae) and a pseudogene may be generally present in the lineage of lionfish. Copyright © 2014 Elsevier Ltd. All rights reserved.

  13. Evolution of the Sinus Venosus from Fish to Human

    Directory of Open Access Journals (Sweden)

    Bjarke Jensen

    2014-03-01

    Full Text Available The sinus venosus, the cardiac chamber upstream of the (right atrium, is a severely underinvestigated structure. Yet, its myocardium harbors the cardiac pacemaker in all vertebrates. In human, ectopic pacemaking and subsequent pathologies may originate from sinus venosus-derived myocardium surrounding the coronary sinus and the superior caval vein. In ectothermic vertebrates, i.e., fishes, amphibians and reptiles, the sinus venosus aids atrial filling by contracting prior to the atrium (atria. This is facilitated by the sinuatrial delay of approximately the same duration as the atrioventricular delay, which facilitates atrial filling of the ventricles. In mammals, the sinuatrial delay is lost, and the sinus venosus-derived myocardium persists as an extensive myocardial sheet surrounding the caval veins, which is activated in synchrony with the myocardium of the atria. The caval vein myocardium is hardly of significance in the healthy formed heart, but we suggest that the sinus venosus functions as a chamber during development when cardiac output, heart rate, blood pressure and architecture is much more like that of ectothermic vertebrates. The remodeling of the sinus venosus in mammals may be an adaptation associated with the high heart rates necessary for postnatal endothermy. If so, the endothermic birds should exhibit a similar remodeling as mammals, which remains to be investigated.

  14. The evolution of fishes and corals on reefs: form, function and interdependence.

    Science.gov (United States)

    Bellwood, David R; Goatley, Christopher H R; Bellwood, Orpha

    2017-05-01

    Coral reefs are renowned for their spectacular biodiversity and the close links between fishes and corals. Despite extensive fossil records and common biogeographic histories, the evolution of these two key groups has rarely been considered together. We therefore examine recent advances in molecular phylogenetics and palaeoecology, and place the evolution of fishes and corals in a functional context. In critically reviewing the available fossil and phylogenetic evidence, we reveal a marked congruence in the evolution of the two groups. Despite one group consisting of swimming vertebrates and the other colonial symbiotic invertebrates, fishes and corals have remarkably similar evolutionary histories. In the Paleocene and Eocene [66-34 million years ago (Ma)] most modern fish and coral families were present, and both were represented by a wide range of functional morphotypes. However, there is little evidence of diversification at this time. By contrast, in the Oligocene and Miocene (34-5.3 Ma), both groups exhibited rapid lineage diversification. There is also evidence of increasing reef area, occupation of new habitats, increasing coral cover, and potentially, increasing fish abundance. Functionally, the Oligocene-Miocene is marked by the appearance of new fish and coral taxa associated with high-turnover fast-growth ecosystems and the colonization of reef flats. It is in this period that the functional characteristics of modern coral reefs were established. Most species, however, only arose in the last 5.3 million years (Myr; Plio-Pleistocene), with the average age of fish species being 5.3 Myr, and corals just 1.9 Myr. While these species are genetically distinct, phenotypic differences are often limited to variation in colour or minor morphological features. This suggests that the rapid increase in biodiversity during the last 5.3 Myr was not matched by changes in ecosystem function. For reef fishes, colour appears to be central to recent

  15. Ethnotaxonomical considerations and usage of ichthyofauna in a fishing community in Cear? State, Northeast Brazil

    OpenAIRE

    Pinto, M?rcia Freire; Mour?o, Jos? da Silva; Alves, R?mulo Romeu N?brega

    2013-01-01

    Background Artisanal fishery is one of the most important economic activities for human populations living in coastal areas. The traditional knowledge that fishermen have of fishes is of utmost importance for the establishment of conservation strategies for many species. This study aimed to analyse the knowledge of and utilization of fishes by the artisanal fishermen in a fishing community on the coast of Cear? State (Northeast Brazil). Methods In 2011, a number of semi-structured interviews ...

  16. Reef fish community in presence of the lionfish (Pterois volitans) in Santa Marta, Colombian Caribbean

    OpenAIRE

    García-Urueña, Rocío; Acero P, Arturo; Coronado-Carrascal, Víctor

    2015-01-01

    ABSTRACT Objective. Fish species community structure and benthic organisms coverage were studied in five localities in Santa Marta where the lionfish is present. Materials and methods. Abundance of fish species, including lion fish, was established using 30 m random visual censuses and video transects; trophic guilds were established according to available references. On the other hand benthic coverage was evaluated using the software Coral Point Count (CPCe) 4.0. Results. Families with highe...

  17. Fish Community Structure and Diet Responses to Newbury Weirs in a Low-Gradient River

    Science.gov (United States)

    Bonjour, Sophia M.; Rantala, Heidi M.; Bennett, Micah G.; Whiles, Matt R.

    2018-06-01

    Restoration projects are often implemented to address specific issues in the environment. Consequences of a restoration project, if any are measured, typically focus on direct changes to the projects focus. However, changing habitat structure likely results in changes to the environment that affect the communities living there. Rock weirs have been used for channel stabilization in many midwestern rivers. Previous research in a southern Illinois river found that weirs benefitted aquatic macroinvertebrate and riparian bird communities by enhancing habitat heterogeneity and insect emergence production. We hypothesized that fishes would also benefit from weirs through enhanced habitat and food availability. We collected fishes in the Cache River in southern Illinois using hand nets, seines, and electroshocking at sites where weirs had been installed and at non-weir sites. Gut contents were identified and individual food items measured. Fish species richness, but not diversity, was higher at weir sites. Fish communities also differed between site types, with benthic feeders characterizing weir sites. Gut content biomass and abundance differed among fish guilds but not between weir and non-weir sites. Fishes from both site types selected for prey taxa predominately found at weirs. Differences between site types were not always captured by univariate metrics, but connecting fish prey to habitat suggests a reach-scale benefit for fishes through increased abundance of favored prey and enhanced prey diversity. Additionally, given the paucity of rocky substrata in the river as a whole, rock weirs enhance fish species richness by providing habitat for less common benthic species.

  18. Establishment of a fish community in the hayden-rhodes and salt-gila aqueducts, Arizona

    Science.gov (United States)

    Mueller, G.

    1996-01-01

    Fish populations were studied in the Central Arizona Project's canal system during the first 4 years of aqueduct operation (1986-1989). Ichthyoplankton entering the canal from Lake Havasu averaged 1 larva/m3 during April-June 1987 and 1988. Larval fish densities increased significantly in downstream samples, substantiating diver observations that fish were spawning in the canal system. Of the 16 fish species collected, 14 were assumed to have originated from Lake Havasu and 2 were introduced by anglers from their bait buckets. Initially, the fish community was dominated numerically by threadfin shad Dorosoma petenense (>88%), centrarchids (< 10%), cyprinids (<2%), and striped bass Morone saxatilis (<1%). However, as annual water diversions increased from 13 x 108 m3 in 1986 to 9.4 x 108 m3 in 1989, community composition shifted from clupeids to centrarchids (70%). Fish densities dropped from an estimated 1,260 fish/ha in 1986 to 17 fish/ha in 1989, and biomass dropped from 116 to 73 kg/ha. Declines were attributed to higher operational velocities, associated scour, deprivation, and predation. Although initial populations adjusted downward to planned operational conditions, the fish community continued to represent a potentially valuable, but as yet unused, resource.

  19. Diversity and community structure of epibenthic invertebrates and fish in the North Sea

    DEFF Research Database (Denmark)

    Callaway, R.; Alsväg, J.; de Boois, I.

    2002-01-01

    The structure of North Sea benthic invertebrate and fish communities is an important indicator of anthropogenic and environmental impacts. Although North Sea fish stocks are monitored regularly, benthic fauna are not. Here, we report the results of a survey carried out in 2000, in which five...

  20. Community based fish culture in the public and private floodplains of Bangladesh

    NARCIS (Netherlands)

    Mahfuzul Haque, A.B.

    2015-01-01

    Seasonal floodplains are water bodies that retain water for 5-6 months during which they are suitable to grow fish and other aquatic animals. Out of 2.8 million ha of medium and deep-flooded areas, about 1.5 million ha are estimated to be suitable for Community-Based Fish Culture (CBFC).

  1. Spatial and temporal repeatability in parasite community structure of tropical fish hosts.

    Science.gov (United States)

    Vidal-Martínez, V M; Poulin, R

    2003-10-01

    An assessment is made of the repeatability of parasite community structure in space for a marine fish, and in space and time for a freshwater fish from south-eastern Mexico. The marine fish species was the red grouper, Epinephelus morio (collected from 9 localities), and the freshwater species was the cichlid, Cichlasoma urophthalmus (collected from 6 localities: including monthly at 2 localities for 1 year, and bimonthly at 1 locality in 1990 and 1999). Pairwise interspecific associations and analyses of nested patterns in the distributions of parasite species among hosts were used in both fish species, with comparisons over time made only with the cichlid. Positive interspecific associations, and nested patterns were noted in some localities for both fish species, and/or at some sampling times for the cichlid fish. However, non-random patterns in the structure of parasite communities in these 2 host species only were observed sporadically. When present, nestedness in both fish species was apparently linked with a positive association between total infection intensities and fish size. Additionally, adjacent localities were more likely to display similar parasite community structure than distant ones. This preliminary result suggests that distance between localities is an important determinant of predictability in parasite community structure.

  2. The importance of surrogate habitats in lowland river floodplains for fish community composition

    Czech Academy of Sciences Publication Activity Database

    Ryšavá-Nováková, Michaela; Ondračková, Markéta; Jurajda, Pavel

    2009-01-01

    Roč. 16, č. 6 (2009), s. 468-477 ISSN 0969-997X R&D Projects: GA MŠk LC522 Institutional research plan: CEZ:AV0Z60930519 Keywords : fish community * fish recruitment * flood * rehabilitation * substitute habitats Subject RIV: EH - Ecology, Behaviour Impact factor: 1.264, year: 2009

  3. Impacts of climate warming on lake fish community structure and potential effects on ecosystem function

    NARCIS (Netherlands)

    Jeppesen, E.; Meerhoff, M.; Holmgren, K.; González-Bergonzoni, I.; Teixeira-de Mello, F.; Declerck, Steven A.J.; De Meester, L.; Søndergaard, M.; Lauridsen, T.; Bjerring, R.; Conde-Porcuna, J-M.; Mazzeo, N.; Iglesias, C.; Reizenstein, M.; Malmquist, H.J.; Liu, Z.; Balayla, D.; Lazzaro, X.

    2010-01-01

    Fish play a key role in the trophic dynamics of lakes, not least in shallow systems. With climate warming, complex changes in fish community structure may be expected owing to the direct and indirect effects of temperature, and indirect effects of eutrophication, water-level changes and salinisation

  4. PISCATOR, an individual-based model to analyze the dynamics of lake fish communities

    NARCIS (Netherlands)

    Nes, van E.H.; Lammens, E.H.R.R.; Scheffer, M.

    2002-01-01

    Unraveling the mechanisms that drive dynamics of multi-species fish communities is notoriously difficult. Not only are the interactions between fish populations complex, but also the functional niche of individual animals changes profoundly as they grow, making variation in size within populations

  5. Spearfishing data reveals the littoral fish communities' association to coastal configuration

    Science.gov (United States)

    Boada, Jordi; Sagué, Oscar; Gordoa, Ana

    2017-12-01

    Increasing the knowledge about littoral fish communities is important for ecological sciences, fisheries and the sustainability of human communities. The scarcity of baseline data at large spatial scales in a fast-changing world makes it necessary to implement special programs to monitor natural ecosystems. In the present study, we evaluate littoral fish communities using data from spearfishing contests. The Catalan Federation of Underwater Activities (FECDAS) regularly organizes fishing contests across ca. 600 km of coast. Catch records made over the last sixteen years were used to study the fish communities along the coastline. We found two different communities that are closely related to the habitat configuration at a regional level. Interestingly, contests held on the northern coast were mainly grouped together and were characterized by species that inhabit complex rocky habitats, and contests held on the southern coast were grouped together and were mainly determined by soft bottoms species (i.e. mugilids and Sarpa salpa). In the south group the white sea bream was also very abundant compared to the north group. No significant changes in the community composition were found in the studied period and we successfully set descriptive baselines. Finally, based on these results we propose that studying the data from fishing contest records can be used to complement the available tools for monitoring fish communities.

  6. Genomic Diversity and Evolution of the Fish Pathogen Flavobacterium psychrophilum

    Directory of Open Access Journals (Sweden)

    Eric Duchaud

    2018-02-01

    Full Text Available Flavobacterium psychrophilum, the etiological agent of rainbow trout fry syndrome and bacterial cold-water disease in salmonid fish, is currently one of the main bacterial pathogens hampering the productivity of salmonid farming worldwide. In this study, the genomic diversity of the F. psychrophilum species is analyzed using a set of 41 genomes, including 30 newly sequenced isolates. These were selected on the basis of available MLST data with the two-fold objective of maximizing the coverage of the species diversity and of allowing a focus on the main clonal complex (CC-ST10 infecting farmed rainbow trout (Oncorhynchus mykiss worldwide. The results reveal a bacterial species harboring a limited genomic diversity both in terms of nucleotide diversity, with ~0.3% nucleotide divergence inside CDSs in pairwise genome comparisons, and in terms of gene repertoire, with the core genome accounting for ~80% of the genes in each genome. The pan-genome seems nevertheless “open” according to the scaling exponent of a power-law fitted on the rate of new gene discovery when genomes are added one-by-one. Recombination is a key component of the evolutionary process of the species as seen in the high level of apparent homoplasy in the core genome. Using a Hidden Markov Model to delineate recombination tracts in pairs of closely related genomes, the average recombination tract length was estimated to ~4.0 Kbp and the typical ratio of the contributions of recombination and mutations to nucleotide-level differentiation (r/m was estimated to ~13. Within CC-ST10, evolutionary distances computed on non-recombined regions and comparisons between 22 isolates sampled up to 27 years apart suggest a most recent common ancestor in the second half of the nineteenth century in North America with subsequent diversification and transmission of this clonal complex coinciding with the worldwide expansion of rainbow trout farming. With the goal to promote the development of

  7. Evolution of movement rate increases the effectiveness of marine reserves for the conservation of pelagic fishes.

    Science.gov (United States)

    Mee, Jonathan A; Otto, Sarah P; Pauly, Daniel

    2017-06-01

    Current debates about the efficacy of no-take marine reserves (MR) in protecting large pelagic fish such as tuna and sharks have usually not considered the evolutionary dimension of this issue, which emerges because the propensity to swim away from a given place, like any other biological trait, will probably vary in a heritable fashion among individuals. Here, based on spatially explicit simulations, we investigated whether selection to remain in MRs to avoid higher fishing mortality can lead to the evolution of more philopatric fish. Our simulations, which covered a range of life histories among tuna species (skipjack tuna vs. Atlantic bluefin tuna) and shark species (great white sharks vs. spiny dogfish), suggested that MRs were most effective at maintaining viable population sizes when movement distances were lowest. Decreased movement rate evolved following the establishment of marine reserves, and this evolution occurred more rapidly with higher fishing pressure. Evolutionary reductions in movement rate led to increases in within-reserve population sizes over the course of the 50 years following MR establishment, although this varied among life histories, with skipjack responding fastest and great white sharks slowest. Our results suggest the evolution of decreased movement can augment the efficacy of marine reserves, especially for species, such as skipjack tuna, with relatively short generation times. Even when movement rates did not evolve substantially over 50 years (e.g., given long generation times or little heritable variation), marine reserves were an effective tool for the conservation of fish populations when mean movement rates were low or MRs were large.

  8. Evolution of the branchiostegal membrane and restricted gill openings in Actinopterygian fishes.

    Science.gov (United States)

    Farina, Stacy C; Near, Thomas J; Bemis, William E

    2015-06-01

    A phylogenetic survey is a powerful approach for investigating the evolutionary history of a morphological characteristic that has evolved numerous times without obvious functional implications. Restricted gill openings, an extreme modification of the branchiostegal membrane, are an example of such a characteristic. We examine the evolution of branchiostegal membrane morphology and highlight convergent evolution of restricted gill openings. We surveyed specimens from 433 families of actinopterygians for branchiostegal membrane morphology and measured head and body dimensions. We inferred a relaxed molecular clock phylogeny with branch length estimates based on nine nuclear genes sampled from 285 species that include all major lineages of Actinopterygii. We calculated marginal state reconstructions of four branchiostegal membrane conditions and found that restricted gill openings have evolved independently in at least 11 major actinopterygian clades, and the total number of independent origins of the trait is likely much higher. A principal component analysis revealed that fishes with restricted gill openings occupy a larger morphospace, as defined by our linear measurements, than do fishes with nonrestricted openings. We used a decision tree analysis of ecological data to determine if restricted gill openings are linked to certain environments. We found that fishes with restricted gill openings repeatedly occur under a variety of ecological conditions, although they are rare in open-ocean pelagic environments. We also tested seven ratios for their utility in distinguishing between fishes with and without restricted gill openings, and we propose a simple metric for quantifying restricted gill openings (RGO), defined as a ratio of the distance from the ventral midline to the gill opening relative to half the circumference of the head. Functional explanations for this specialized morphology likely differ within each clade, but its repeated evolution indicates a need

  9. Baseline assessment of the fish and benthic communities of the Flower Garden Banks (NODC Accession 0118358)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The proposed work develop baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys will employ...

  10. Baseline assessment of fish and benthic communities of the Flower Garden Banks (NODC Accession 0118358)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The proposed work develop baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys will employ...

  11. Baseline assessment of fish and benthic communities of the Flower Garden Banks

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The work developed baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys employed diving,...

  12. Spatial patterns of infauna, epifauna and demersal fish communities in the North Sea.

    NARCIS (Netherlands)

    Reiss, H.; Degraer, S.; Duineveld, G.C.A.; Craeymeersch, J.A.M.

    2010-01-01

    Understanding the structure and interrelationships of North Sea benthic invertebrate and fish communities and their underlying environmental drivers is an important prerequisite for conservation and spatial ecosystem management on scales relevant to ecological processes. Datasets of North Sea

  13. Baseline assessment of fish communities of the Flower Garden Banks (2010 - present): 2011

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The proposed work develop baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys will employ...

  14. Application of the target fish community model to an urban river system.

    Science.gov (United States)

    Meixler, Marcia S

    2011-04-01

    Several models have been developed to assess the biological integrity of aquatic systems using fish community data. One of these, the target fish community (TFC) model, has been used primarily to assess the biological integrity of larger, mainstem rivers in southern New England with basins characterized by dispersed human activities. We tested the efficacy of the TFC approach to specify the fish community in the highly urbanized Charles River watershed in eastern Massachusetts. To create a TFC for the Charles River we assembled a list of fish species that historically inhabited the Charles River watershed, identified geomorphically and zoogeographically similar reference rivers regarded as being in high quality condition, amassed fish survey data for the reference rivers, and extracted from the collections the information needed to define a TFC. We used a similarity measurement method to assess the extent to which the study river community complies with the TFC and an inference approach to summarize the manner in which the existing fish community differed from target conditions. The five most abundant species in the TFC were common shiners (34%), fallfish (17%) redbreast sunfish (11%), white suckers (8%), and American eel (7%). Three of the five species predicted to be most abundant in the TFC were scarce or absent in the existing river community. Further, the river was dominated by macrohabitat generalists (99%) while the TFC was predicted to contain 19% fluvial specialist species, 43% fluvial dependent species, and 38% macrohabitat generalist species. In addition, while the target community was dominated by fish intolerant (37%) and moderately tolerant (39%) of water quality degradation, the existing community was dominated by tolerant individuals (59%) and lacked intolerant species expected in the TFC. Similarity scores for species, habitat use specialization, and water quality degradation tolerance categories were 28%, 35% and 66%, respectively. The clear

  15. The structure and evolution of plankton communities

    Science.gov (United States)

    Longhurst, Alan R.

    New understanding of the circulation of ancient oceans is not yet matched by progress in our understanding of their pelagic ecology, though it was the planktonic ecosystems that generated our offshore oil and gas reserves. Can we assume that present-day models of ecosystem function are also valid for ancient seas? This question is addressed by a study of over 4000 plankton samples to derive a comprehensive, global description of zooplankton community structure in modern oceans: this shows that copepods form only 50% of the biomass of all plankton, ranging from 70% in polar to 35% in tropical seas. Comparable figures are derived from 14 other taxonomic categories of zooplankton. For trophic groupings, the data indicate globally: geletinous predators - 14%; gelatinous herbivores - 4%; raptorial predators - 33%; macrofiltering herbivores - 20%; macrofiltering omnivores - 25%; and detritivores - 3%. A simple, idealized model for the modern pelagic ecosystem is derived from these percentages which indicates that metazooplankton are not the most important consumers of pico- and nano-plankton production which itself probably constitutes 90% of primary production in warm oceans. This model is then compared with candidate life-forms available in Palaeozoic and Mesozoic oceans to determine to what extent it is also valid for ancient ecosystems: it is concluded that it is probably unnecessary to postulate models fundamentally differing from it in order to accommodate the life-forms, both protozoic and metazoic, known to have populated ancient seas. Remarkably few life-forms have existed which cannot be paralleled in the modern ocean, which contains remarkably few life-forms which cannot be paralleled in the Palaeozoic ocean. As a first assumption, then, it is reasonable to assume that energy pathways were similar in ancient oceans to those we study today.

  16. Status of Coral Reef Fish Communities within the Mombasa Marine ...

    African Journals Online (AJOL)

    The abundance, trophic composition and diversity of fish were investigated in the Mombasa Marine Protected Area (MPA) on the Kenya coast over a period of four years (2004-2007) sixteen years after its establishment to determine its effectiveness. Fish monitoring data collected using belt transects revealed significant ...

  17. Molecular Evolution of Aralkylamine N-Acetyltransferase in Fish: A Genomic Survey

    Directory of Open Access Journals (Sweden)

    Jia Li

    2015-12-01

    Full Text Available All living organisms synchronize biological functions with environmental changes; melatonin plays a vital role in regulating daily and seasonal variations. Due to rhythmic activity of the timezyme aralkylamine N-acetyltransferase (AANAT, the blood level of melatonin increases at night and decreases during daytime. Whereas other vertebrates have a single form of AANAT, bony fishes possess various isoforms of aanat genes, though the reasons are still unclear. Here, we have taken advantage of multiple unpublished teleost aanat sequences to explore and expand our understanding of the molecular evolution of aanat in fish. Our results confirm that two rounds of whole-genome duplication (WGD led to the existence of three fish isoforms of aanat, i.e., aanat1a, aanat1b, and aanat2; in addition, gene loss led to the absence of some forms from certain special fish species. Furthermore, we suggest the different roles of two aanat1s in amphibious mudskippers, and speculate that the loss of aanat1a, may be related to terrestrial vision change. Several important sites of AANAT proteins and regulatory elements of aanat genes were analyzed for structural comparison and functional forecasting, respectively, which provides insights into the molecular evolution of the differences between AANAT1 and AANAT2.

  18. Effects of marine reserves versus nursery habitat availability on structure of reef fish communities.

    Science.gov (United States)

    Nagelkerken, Ivan; Grol, Monique G G; Mumby, Peter J

    2012-01-01

    No-take marine fishery reserves sustain commercial stocks by acting as buffers against overexploitation and enhancing fishery catches in adjacent areas through spillover. Likewise, nursery habitats such as mangroves enhance populations of some species in adjacent habitats. However, there is lack of understanding of the magnitude of stock enhancement and the effects on community structure when both protection from fishing and access to nurseries concurrently act as drivers of fish population dynamics. In this study we test the separate as well as interactive effects of marine reserves and nursery habitat proximity on structure and abundance of coral reef fish communities. Reserves had no effect on fish community composition, while proximity to nursery habitat only had a significant effect on community structure of species that use mangroves or seagrass beds as nurseries. In terms of reef fish biomass, proximity to nursery habitat by far outweighed (biomass 249% higher than that in areas with no nursery access) the effects of protection from fishing in reserves (biomass 21% lower than non-reserve areas) for small nursery fish (≤ 25 cm total length). For large-bodied individuals of nursery species (>25 cm total length), an additive effect was present for these two factors, although fish benefited more from fishing protection (203% higher biomass) than from proximity to nurseries (139% higher). The magnitude of elevated biomass for small fish on coral reefs due to proximity to nurseries was such that nursery habitats seem able to overrule the usually positive effects on fish biomass by reef reserves. As a result, conservation of nursery habitats gains importance and more consideration should be given to the ecological processes that occur along nursery-reef boundaries that connect neighboring ecosystems.

  19. Effects of marine reserves versus nursery habitat availability on structure of reef fish communities.

    Directory of Open Access Journals (Sweden)

    Ivan Nagelkerken

    Full Text Available No-take marine fishery reserves sustain commercial stocks by acting as buffers against overexploitation and enhancing fishery catches in adjacent areas through spillover. Likewise, nursery habitats such as mangroves enhance populations of some species in adjacent habitats. However, there is lack of understanding of the magnitude of stock enhancement and the effects on community structure when both protection from fishing and access to nurseries concurrently act as drivers of fish population dynamics. In this study we test the separate as well as interactive effects of marine reserves and nursery habitat proximity on structure and abundance of coral reef fish communities. Reserves had no effect on fish community composition, while proximity to nursery habitat only had a significant effect on community structure of species that use mangroves or seagrass beds as nurseries. In terms of reef fish biomass, proximity to nursery habitat by far outweighed (biomass 249% higher than that in areas with no nursery access the effects of protection from fishing in reserves (biomass 21% lower than non-reserve areas for small nursery fish (≤ 25 cm total length. For large-bodied individuals of nursery species (>25 cm total length, an additive effect was present for these two factors, although fish benefited more from fishing protection (203% higher biomass than from proximity to nurseries (139% higher. The magnitude of elevated biomass for small fish on coral reefs due to proximity to nurseries was such that nursery habitats seem able to overrule the usually positive effects on fish biomass by reef reserves. As a result, conservation of nursery habitats gains importance and more consideration should be given to the ecological processes that occur along nursery-reef boundaries that connect neighboring ecosystems.

  20. The origin and evolution of the surfactant system in fish: insights into the evolution of lungs and swim bladders.

    Science.gov (United States)

    Daniels, Christopher B; Orgeig, Sandra; Sullivan, Lucy C; Ling, Nicholas; Bennett, Michael B; Schürch, Samuel; Val, Adalberto Luis; Brauner, Colin J

    2004-01-01

    Several times throughout their radiation fish have evolved either lungs or swim bladders as gas-holding structures. Lungs and swim bladders have different ontogenetic origins and can be used either for buoyancy or as an accessory respiratory organ. Therefore, the presence of air-filled bladders or lungs in different groups of fishes is an example of convergent evolution. We propose that air breathing could not occur without the presence of a surfactant system and suggest that this system may have originated in epithelial cells lining the pharynx. Here we present new data on the surfactant system in swim bladders of three teleost fish (the air-breathing pirarucu Arapaima gigas and tarpon Megalops cyprinoides and the non-air-breathing New Zealand snapper Pagrus auratus). We determined the presence of surfactant using biochemical, biophysical, and morphological analyses and determined homology using immunohistochemical analysis of the surfactant proteins (SPs). We relate the presence and structure of the surfactant system to those previously described in the swim bladders of another teleost, the goldfish, and those of the air-breathing organs of the other members of the Osteichthyes, the more primitive air-breathing Actinopterygii and the Sarcopterygii. Snapper and tarpon swim bladders are lined with squamous and cuboidal epithelial cells, respectively, containing membrane-bound lamellar bodies. Phosphatidylcholine dominates the phospholipid (PL) profile of lavage material from all fish analyzed to date. The presence of the characteristic surfactant lipids in pirarucu and tarpon, lamellar bodies in tarpon and snapper, SP-B in tarpon and pirarucu lavage, and SPs (A, B, and D) in swim bladder tissue of the tarpon provide strong evidence that the surfactant system of teleosts is homologous with that of other fish and of tetrapods. This study is the first demonstration of the presence of SP-D in the air-breathing organs of nonmammalian species and SP-B in actinopterygian

  1. Habitat dynamics, marine reserve status, and the decline and recovery of coral reef fish communities

    Science.gov (United States)

    Williamson, David H; Ceccarelli, Daniela M; Evans, Richard D; Jones, Geoffrey P; Russ, Garry R

    2014-01-01

    Severe climatic disturbance events often have major impacts on coral reef communities, generating cycles of decline and recovery, and in some extreme cases, community-level phase shifts from coral-to algal-dominated states. Benthic habitat changes directly affect reef fish communities, with low coral cover usually associated with low fish diversity and abundance. No-take marine reserves (NTRs) are widely advocated for conserving biodiversity and enhancing the sustainability of exploited fish populations. Numerous studies have documented positive ecological and socio-economic benefits of NTRs; however, the ability of NTRs to ameliorate the effects of acute disturbances on coral reefs has seldom been investigated. Here, we test these factors by tracking the dynamics of benthic and fish communities, including the important fishery species, coral trout (Plectropomus spp.), over 8 years in both NTRs and fished areas in the Keppel Island group, Great Barrier Reef, Australia. Two major disturbances impacted the reefs during the monitoring period, a coral bleaching event in 2006 and a freshwater flood plume in 2011. Both disturbances generated significant declines in coral cover and habitat complexity, with subsequent declines in fish abundance and diversity, and pronounced shifts in fish assemblage structure. Coral trout density also declined in response to the loss of live coral, however, the approximately 2:1 density ratio between NTRs and fished zones was maintained over time. The only post-disturbance refuges for coral trout spawning stocks were within the NTRs that escaped the worst effects of the disturbances. Although NTRs had little discernible effect on the temporal dynamics of benthic or fish communities, it was evident that the post-disturbance refuges for coral trout spawning stocks within some NTRs may be critically important to regional-scale population persistence and recovery. PMID:24634720

  2. Impact of 21st century climate change on the Baltic Sea fish community and fisheries

    DEFF Research Database (Denmark)

    MacKenzie, Brian; Gislason, Henrik; Möllmann, C.

    2007-01-01

    reviewed. We then use recent regional - scale climate - ocean modelling results to consider how climate change during this century will affect the fish community of the Baltic and fisheries management. Expected climate changes in northern Europe will likely affect both the temperature and salinity...... some of the uncertainties and complexities associated with forecasting how fish populations, communities and industries dependent on an estuarine ecosystem might respond to future climate change.......The Baltic Sea is a large brackish semienclosed sea whose species-poor fish community supports important commercial and recreational fisheries. Both the fish species and the fisheries are strongly affected by climate variations. These climatic effects and the underlying mechanisms are briefly...

  3. Food resource partitioning in a fish community of the central Amazon floodplain

    Directory of Open Access Journals (Sweden)

    Bernard de Mérona

    Full Text Available Diets of most of fish species inhabiting a floodplain lake in central Amazonia were studied over a two years and half period. Based on the percentage of relative occurrence of 11 major food categories a classification of species in 11 feeding guilds is proposed. Many species were found to be specialized feeders. Fish, detritus and insects were the most important food resources supporting the fish community in both seasons, but the proportions of fruits, invertebrates and fish were reduced during the low water season. At the community level mean diet overlap between species was low, suggesting efficient resource partitioning within the community. However mean overlap between unspecialized feeders was high. Based on the 23 most abundant species belonging to the different feeding guilds, there was no difference in mean overlap between seasons. Whereas individual species exhibited diet changes between high water and low water seasons, there was no general pattern of seasonal change within feeding guilds.

  4. Long-term trends in the St. Marys River open water fish community

    Science.gov (United States)

    Schaeffer, Jeffrey S.; Fielder, David G.; Godby, Neal; Bowen, Anjanette; O'Connor, Lisa; Parrish, Josh; Greenwood, Susan; Chong, Stephen; Wright, Greg

    2011-01-01

    We examined trends in species composition and abundance of the St. Marys River fish community. Abundance data were available approximately once every six years from 1975 through 2006, and size and age data were available from 1995 through 2006. We also compared survey data in 2006 with results of a concurrent creel survey that year, as well as data from prior surveys spanning a 69 year time frame. The St. Marys River fish community was best characterized as a coolwater fish community with apparent little variation in species composition, and only slight variation in overall fish abundance since 1975. However, we did find recent trends in abundance among target species sought by anglers: centrarchids increased, percids appeared stable, and both northern pike Esox lucius and cisco Coregonus artedii declined. Survey results suggested that walleye (Sander vitreus) and yellow perch (Perca flavescens) experienced moderate exploitation but benefited from recent strong recruitment and faster growth. Mechanisms underlying declines of northern pike and cisco were not clear; reduced abundance could have resulted from high exploitation, variation in recruitment, or a combination of both factors. Despite these challenges, the St. Marys River fish community appears remarkably stable. We suggest that managers insure that creel surveys occur simultaneously with assessments, but periodic gill net surveys may no longer provide adequate data in support of recent, more complex management objectives. While additional surveys would add costs, more frequent data might ensure sustainability of a unique fish community that supports a large proportion of angler effort on Lake Huron.

  5. Fish community composition, seasonality and abundance in Fortaleza Lagoon, cidreira

    Directory of Open Access Journals (Sweden)

    Lúcia Cabral Schifino

    2004-09-01

    Full Text Available The Fortaleza Lagoon belongs to the Southern Tramandaí subsystem, formed by lagoons disposed linearly on the north-south direction (30º 08’S, 50º 13’W. The objective of this study was to describe some aspects related to the composition of the fish community of Fortaleza Lagoon. Samples were collected monthly from November 1998 to October 1999. The specimens were captured at four previously determined points in the lagoon, and classified in five orders, 12 families and 22 species. Cyphocharax voga, Hyphessobrycon luetkenii, Oligosarcus jenynsii, Oligosarcus robustus and Loricariichthys anus were more abundant species. Amongst the sampled species only two could not be characterised as freshwater species: Centropomus sp (marine and Lycengraulius grossidens (estuarine. The ichthyofauna of the lagoon was predominantly composed by constant species.A Planície Costeira do Rio Grande do Sul é formada por uma série de corpos d’água, dispostos em seqüência ao longo da costa. A lagoa da Fortaleza pertence ao subsistema lagunar Tramandaí-Sul que é composto por lagoas, dispostas linearmente no sentido norte-sul. O do presente estudo teve como objetivo descrever alguns aspectos relacionados à composição da comunidade de peixes da Lagoa da Fortaleza. As amostragens foram realizadas, mensalmente, no período de novembro de 1998 a outubro de 1999. Os exemplares foram capturados em 4 pontos da lagoa previamente determinados e classificados em 5 ordens, 11 famílias e 22 espécies. As espécies Cyphocharax voga, Hyphessobrycon luetkenii, Oligosarcus jenynsii, Oligosarcus robustus e Loricariichthys anus mostraram-se as mais abundantes. Entre as espécies coletadas apenas duas não caracterizam espécies de água doce: Centropomus sp (marinha and Lycengraulius grossidens (estuarina. A ictiofauna da lagoa caracterizou-se por uma predominância de espécies constantes.

  6. [Fish community structure and its seasonal change in subtidal sandy beach habitat off southern Gouqi Island].

    Science.gov (United States)

    Wang, Zhen-Hua; Wang, Kai; Zhao, Jing; Zhang, Shou-Yu

    2011-05-01

    To understand the characteristics of fish community structure in sandy beach habitats of island reef water areas, and to evaluate the potential capacity of these habitats in local fish stock maintenance, fishes were monthly collected with multi-mesh trammel nets in 2009 from the subtidal sandy beach habitat off southern Gouqi Island, taking the adjacent rocky reef habitat as the control. alpha and beta species diversity indices, index of relative importance (IRI), relative catch rate, and dominance curve for abundance and biomass (ABC curve) were adopted to compare the fish species composition, diversity, and community pattern between the two habitats, and multivariate statistical analyses such as non-metric multidimensional scaling (nMDS) and cluster were conducted to discuss the fish assemblage patterns. A total of 63 fish species belonging to 11 orders, 38 families, and 56 genera were collected, of which, 46 fish species were appeared in the two habitats. Due to the appearance of more warm water species in sandy bottom, the fishes in subtidal sandy beach habitat showed much higher richness, and the abundance catch rate (ACR) from May to July was higher than that in rocky reef habitat. In most rest months, the ACR in subtidal sandy beach habitat also showed the similar trend. However, the species richness and diversity in spring and summer were significantly lower in subtidal sandy beach habitat than in rocky reef habitat, because of the high species dominance and low evenness in the sandy beach habitat. Japanese tonguefish (Paraplagusia japonica) was the indicator species in the sandy beach habitat, and dominated in early spring, later summer, autumn, and winter when the fishing pressure was not strong. In sandy bottom, a unique community structure was formed and kept in dynamic, due to the nursery use of sandy beach by Japanese anchovy (Engraulis japonicus) from May to July, the gathering of gray mullet (Mugil cephalus) in most months for feeding, and the large

  7. The hidden half: ecology and evolution of cryptobenthic fishes on coral reefs.

    Science.gov (United States)

    Brandl, Simon J; Goatley, Christopher H R; Bellwood, David R; Tornabene, Luke

    2018-05-07

    Teleost fishes are the most diverse group of vertebrates on Earth. On tropical coral reefs, their species richness exceeds 6000 species; one tenth of total vertebrate biodiversity. A large proportion of this diversity is composed of cryptobenthic reef fishes (CRFs): bottom-dwelling, morphologically or behaviourally cryptic species typically less than 50 mm in length. Yet, despite their diversity and abundance, these fishes are both poorly defined and understood. Herein we provide a new quantitative definition and synthesise current knowledge on the diversity, distribution and life history of CRFs. First, we use size distributions within families to define 17 core CRF families as characterised by the high prevalence (>10%) of small-bodied species (fishes, in which virtually no small-bodied species have evolved. We posit that small body size has allowed CRFs to diversify at extremely high rates, primarily by allowing for fine partitioning of microhabitats and facilitation of allopatric reproductive isolation; yet, we are far from understanding and documenting the biodiversity of CRFs. Using rates of description since 1758, we predict that approximately 30 new species of cryptobenthic species will be described per year until 2050 (approximately twice the annual rate compared to large fishes). Furthermore, we predict that by the year 2031, more than half of the described coral reef fish biodiversity will consist of CRFs. These fishes are the 'hidden half' of vertebrate biodiversity on coral reefs. Notably, global geographic coverage and spatial resolution of quantitative data on CRF communities is uniformly poor, which further emphasises the remarkable reservoir of biodiversity that is yet to be discovered. Although small body size may have enabled extensive diversification within CRF families, small size also comes with a suite of ecological challenges that affect fishes' capacities to feed, survive and reproduce; we identify a range of life-history adaptations that

  8. Invasive lionfish harbor a different external bacterial community than native Bahamian fishes

    Science.gov (United States)

    Stevens, J. L.; Olson, J. B.

    2013-12-01

    The introduction and subsequent spread of lionfish into the Atlantic Ocean and Caribbean Sea has become a worldwide conservation issue. These highly successful invaders may also be capable of introducing non-native microorganisms to the invaded regions. This study compared the bacterial communities associated with lionfish external tissue to those of native Bahamian fishes and ambient water. Terminal restriction fragment length polymorphism analyses demonstrated that lionfish bacterial communities were significantly different than those associated with three native Bahamian fishes. Additionally, all fishes harbored distinct bacterial communities from the ambient bacterioplankton. Analysis of bacterial clone libraries from invasive lionfish and native squirrelfish indicated that lionfish communities were more diverse than those associated with squirrelfish, yet did not contain known fish pathogens. Using microscopy and molecular genetic approaches, lionfish eggs were examined for the presence of bacteria to evaluate the capacity for vertical transmission. Eggs removed from the ovaries of gravid females were free of bacteria, suggesting that lionfish likely acquire bacteria from the environment. This study was the first examination of bacterial communities associated with the invasive lionfish and indicated that they support different communities of environmentally derived bacteria than Caribbean reef fishes.

  9. Evolution of the duplicated intracellular lipid-binding protein genes of teleost fishes.

    Science.gov (United States)

    Venkatachalam, Ananda B; Parmar, Manoj B; Wright, Jonathan M

    2017-08-01

    Increasing organismal complexity during the evolution of life has been attributed to the duplication of genes and entire genomes. More recently, theoretical models have been proposed that postulate the fate of duplicated genes, among them the duplication-degeneration-complementation (DDC) model. In the DDC model, the common fate of a duplicated gene is lost from the genome owing to nonfunctionalization. Duplicated genes are retained in the genome either by subfunctionalization, where the functions of the ancestral gene are sub-divided between the sister duplicate genes, or by neofunctionalization, where one of the duplicate genes acquires a new function. Both processes occur either by loss or gain of regulatory elements in the promoters of duplicated genes. Here, we review the genomic organization, evolution, and transcriptional regulation of the multigene family of intracellular lipid-binding protein (iLBP) genes from teleost fishes. Teleost fishes possess many copies of iLBP genes owing to a whole genome duplication (WGD) early in the teleost fish radiation. Moreover, the retention of duplicated iLBP genes is substantially higher than the retention of all other genes duplicated in the teleost genome. The fatty acid-binding protein genes, a subfamily of the iLBP multigene family in zebrafish, are differentially regulated by peroxisome proliferator-activated receptor (PPAR) isoforms, which may account for the retention of iLBP genes in the zebrafish genome by the process of subfunctionalization of cis-acting regulatory elements in iLBP gene promoters.

  10. Defining thresholds of sustainable impact on benthic communities in relation to fishing disturbance.

    Science.gov (United States)

    Lambert, G I; Murray, L G; Hiddink, J G; Hinz, H; Lincoln, H; Hold, N; Cambiè, G; Kaiser, M J

    2017-07-14

    While the direct physical impact on seabed biota is well understood, no studies have defined thresholds to inform an ecosystem-based approach to managing fishing impacts. We addressed this knowledge gap using a large-scale experiment that created a controlled gradient of fishing intensity and assessed the immediate impacts and short-term recovery. We observed a mosaic of taxon-specific responses at various thresholds. The lowest threshold of significant lasting impact occurred between 1 and 3 times fished and elicited a decrease in abundance of 39 to 70% for some sessile epifaunal organisms (cnidarians, bryozoans). This contrasted with significant increases in abundance and/or biomass of scavenging species (epifaunal echinoderms, infaunal crustaceans) by two to four-fold in areas fished twice and more. In spite of these significant specific responses, the benthic community structure, biomass and abundance at the population level appeared resilient to fishing. Overall, natural temporal variation in community metrics exceeded the effects of fishing in this highly dynamic study site, suggesting that an acute level of disturbance (fished over six times) would match the level of natural variation. We discuss the implications of our findings for natural resources management with respect to context-specific human disturbance and provide guidance for best fishing practices.

  11. Marine fish community structure and habitat associations on the Canadian Beaufort shelf and slope

    Science.gov (United States)

    Majewski, Andrew R.; Atchison, Sheila; MacPhee, Shannon; Eert, Jane; Niemi, Andrea; Michel, Christine; Reist, James D.

    2017-03-01

    Marine fishes in the Canadian Beaufort Sea have complex interactions with habitats and prey, and occupy a pivotal position in the food web by transferring energy between lower- and upper-trophic levels, and also within and among habitats (e.g., benthic-pelagic coupling). The distributions, habitat associations, and community structure of most Beaufort Sea marine fishes, however, are unknown thus precluding effective regulatory management of emerging offshore industries in the region (e.g., hydrocarbon development, shipping, and fisheries). Between 2012 and 2014, Fisheries and Oceans Canada conducted the first baseline survey of offshore marine fishes, their habitats, and ecological relationships in the Canadian Beaufort Sea. Benthic trawling was conducted at 45 stations spanning 18-1001 m depths across shelf and slope habitats. Physical oceanographic variables (depth, salinity, temperature, oxygen), biological variables (benthic chlorophyll and integrated water-column chlorophyll) and sediment composition (grain size) were assessed as potential explanatory variables for fish community structure using a non-parametric statistical approach. Selected stations were re-sampled in 2013 and 2014 for a preliminary assessment of inter-annual variability in the fish community. Four distinct fish assemblages were delineated on the Canadian Beaufort Shelf and slope: 1) Nearshore-shelf: 50 and ≤200 m depths, 3) Upper-slope: ≥200 and ≤500 m depths, and 4) Lower-slope: ≥500 m depths. Depth was the environmental variable that best explained fish community structure, and each species assemblage was spatially associated with distinct aspects of the vertical water mass profile. Significant differences in the fish community from east to west were not detected, and the species composition of the assemblages on the Canadian Beaufort Shelf have not changed substantially over the past decade. This community analysis provides a framework for testing hypotheses regarding the trophic

  12. Responses of epibenthic and nektonic macroinvertebrate communities to a gradient of fish size in ponds

    Directory of Open Access Journals (Sweden)

    Marek Nieoczym

    2014-07-01

    Full Text Available Size relationships between fish and organisms from adjacent trophic levels are crucial for predicting the structure and dynamics of aquatic ecosystems. We compared macroinvertebrate communities along a fish-size gradient created by separate stocking of three age cohorts of common carp Cyprinus carpio in semi-natural ponds. The specific size range of fish (small, medium and large corresponding to fish age in ponds was the factor most strongly associated with macroinvertebrate composition. The other significant habitat variables were dissolved oxygen concentration in the water and submerged vegetation abundance in the open-water zone. Among the most numerous taxa in the ponds, relative abundances of Hirudinea, Gastropoda, Odonata and Coleoptera were larger in the presence of small-sized than of larger-sized carp. However, fish size effect was not linear, in that macroinvertebrate assemblages were less similar between ponds containing medium- vs large-sized fish than between ponds with small- vs large-sized fish. The dissimilarity patterns were mainly determined by disparities in abundance of Corixidae, which unlike other taxa common in the ponds occurred in the greatest numbers in the presence of large-sized carp. Macroinvertebrate diversity was greatest in ponds with small-sized fish and was positively related to emergent macrophyte cover. Enhancement of emergent vegetation is recommended as the most effective management strategy to buffer adverse impacts of fish on macroinvertebrates. If fish are present in the system, assessment of the size structure of fish populations can be advantageous in unravelling the essential processes driving the variation in pond communities.

  13. THE INFLUENCE OF SLOW THAWING ON EVOLUTION OF SOME BIOCHEMICAL COMPOUNDS IN FROZEN FISHES

    Directory of Open Access Journals (Sweden)

    Marcel AVRAMIUC

    2017-06-01

    Full Text Available The aim of this work was to study the evolution of pH, amino nitrogen and nitrogen from aminoacids in four fish species, during 48 hours of slow thawing, in order to assess the fish spoilage speed in these keeping conditions. The biological material was represented by frozen fishes (carp, catfish, mackerel and hake which were subjected to slow thawing at room temperature (+20..+22°C, by analysing, at certain time intervals, pH, amino nitrogen - AN (mg %, and nitrogen from aminoacids - NAA (g %. The pH was determined with a digital pH-meter type Hanna, and the nitrogen from aminoacids according to Sörensen method. The amino nitrogen was determined by the difference between the nitrogen content of volatile bases and the nitrogen content of the ammonia and primary amines. As compared to frozen samples, both pH and the amino nitrogen values of all fish samples showed constant and significant increases up to the end of the analyzed period, while the nitrogen from aminoacids only in the first 30 hours of thawing. The amino nitrogen and the nitrogen from amino acids values have indicated the highest spoilage speed in catfish and hake, and the least speed in mackerel.

  14. Brain structure evolution in a basal vertebrate clade: evidence from phylogenetic comparative analysis of cichlid fishes

    Directory of Open Access Journals (Sweden)

    Kolm Niclas

    2009-09-01

    Full Text Available Abstract Background The vertebrate brain is composed of several interconnected, functionally distinct structures and much debate has surrounded the basic question of how these structures evolve. On the one hand, according to the 'mosaic evolution hypothesis', because of the elevated metabolic cost of brain tissue, selection is expected to target specific structures mediating the cognitive abilities which are being favored. On the other hand, the 'concerted evolution hypothesis' argues that developmental constraints limit such mosaic evolution and instead the size of the entire brain varies in response to selection on any of its constituent parts. To date, analyses of these hypotheses of brain evolution have been limited to mammals and birds; excluding Actinopterygii, the basal and most diverse class of vertebrates. Using a combination of recently developed phylogenetic multivariate allometry analyses and comparative methods that can identify distinct rates of evolution, even in highly correlated traits, we studied brain structure evolution in a highly variable clade of ray-finned fishes; the Tanganyikan cichlids. Results Total brain size explained 86% of the variance in brain structure volume in cichlids, a lower proportion than what has previously been reported for mammals. Brain structures showed variation in pair-wise allometry suggesting some degree of independence in evolutionary changes in size. This result is supported by variation among structures on the strength of their loadings on the principal size axis of the allometric analysis. The rate of evolution analyses generally supported the results of the multivariate allometry analyses, showing variation among several structures in their evolutionary patterns. The olfactory bulbs and hypothalamus were found to evolve faster than other structures while the dorsal medulla presented the slowest evolutionary rate. Conclusion Our results favor a mosaic model of brain evolution, as certain

  15. Consistent nutrient storage and supply mediated by diverse fish communities in coral reef ecosystems.

    Science.gov (United States)

    Allgeier, Jacob E; Layman, Craig A; Mumby, Peter J; Rosemond, Amy D

    2014-08-01

    Corals thrive in low nutrient environments and the conservation of these globally imperiled ecosystems is largely dependent on mitigating the effects of anthropogenic nutrient enrichment. However, to better understand the implications of anthropogenic nutrients requires a heightened understanding of baseline nutrient dynamics within these ecosystems. Here, we provide a novel perspective on coral reef nutrient dynamics by examining the role of fish communities in the supply and storage of nitrogen (N) and phosphorus (P). We quantified fish-mediated nutrient storage and supply for 144 species and modeled these data onto 172 fish communities (71 729 individual fish), in four types of coral reefs, as well as seagrass and mangrove ecosystems, throughout the Northern Antilles. Fish communities supplied and stored large quantities of nutrients, with rates varying among ecosystem types. The size structure and diversity of the fish communities best predicted N and P supply and storage and N : P supply, suggesting that alterations to fish communities (e.g., overfishing) will have important implications for nutrient dynamics in these systems. The stoichiometric ratio (N : P) for storage in fish mass (~8 : 1) and supply (~20 : 1) was notably consistent across the four coral reef types (but not seagrass or mangrove ecosystems). Published nutrient enrichment studies on corals show that deviations from this N : P supply ratio may be associated with poor coral fitness, providing qualitative support for the hypothesis that corals and their symbionts may be adapted to specific ratios of nutrient supply. Consumer nutrient stoichiometry provides a baseline from which to better understand nutrient dynamics in coral reef and other coastal ecosystems, information that is greatly needed if we are to implement more effective measures to ensure the future health of the world's oceans. © 2014 John Wiley & Sons Ltd.

  16. Fish community-based measures of estuarine ecological quality and pressure-impact relationships

    Science.gov (United States)

    Fonseca, Vanessa F.; Vasconcelos, Rita P.; Gamito, Rita; Pasquaud, Stéphanie; Gonçalves, Catarina I.; Costa, José L.; Costa, Maria J.; Cabral, Henrique N.

    2013-12-01

    Community-based responses of fish fauna to anthropogenic pressures have been extensively used to assess the ecological quality of estuarine ecosystems. Several methodologies have been developed recently combining metrics reflecting community structure and function. A fish community facing significant environmental disturbances will be characterized by a simplified structure, with lower diversity and complexity. However, estuaries are naturally dynamic ecosystems exposed to numerous human pressures, making it difficult to distinguish between natural and anthropogenic-induced changes to the biological community. In the present work, the variability of several fish metrics was assessed in relation to different pressures in estuarine sites. The response of a multimetric index (Estuarine Fish Assessment Index) was also analysed. Overall, fish metrics and the multimetric index signalled anthropogenic stress, particularly environmental chemical pollution. The fish assemblage associated with this type of pressure was characterized by lower species diversity, lower number of functional guilds, lower abundance of marine migrants and of piscivorous individuals, and higher abundance of estuarine resident species. A decreased ecological quality status, based on the EFAI, was also determined for sites associated with this pressure group. Ultimately, the definition of each pressure groups favoured a stressor-specific analysis, evidencing pressure patterns and accounting for multiple factors in a highly dynamic environment.

  17. Bioaccumulation of selenium from coal fly ash and associated environmental hazards in a freshwater fish community

    International Nuclear Information System (INIS)

    Besser, J.; Giesy, J.; Brown, R.; Herdt, T.; Dawson, G.

    1995-01-01

    Bioaccumulation of Se by fish from Pigeon River and Pigeon Lake, Michigan, which receive inputs of Se from a coal fly-ash disposal facility, was studied to assess potential hazards of Se toxicity to fish and wildlife. Se concentrations in fish from sites receiving Se inputs from fly ash disposal ponds were significantly greater than concentrations in fish from upstream sites, which were near normal background concentrations. Se bioaccumulation differed substantially among fish species, especially in the most contaminated site, where whole-body Se concentrations for the five species analyzed ranged from 1.4 to 3.8 microg/g (wet wt.). The top predator in the community, northern pike (Esox lucius), had Se concentrations less than those in likely prey species. Among lower-order consumers, Se concentrations were greater in limnetic species (spottail shiner, Notropis hudsonius, and yellow perch, Perca flavescens), than in benthic species (white sucker, Catostomus commersoni, and rock bass, Ambloplites rupestris). Se concentrations in tissues of fish from the lower Pigeon River and Pigeon Lake approached, but did not exceed lowest observable effect concentrations (LOAECs) for Se in tissues of sensitive fish species. However, Se concentrations in several fish species exceeded LOAECs for dietary Se exposure of sensitive species of birds and mammals, suggesting that consumption of fish in these areas may pose a hazard to piscivorous wildlife

  18. Taxonomy of USA east coast fishing communities in terms of social vulnerability and resilience

    Energy Technology Data Exchange (ETDEWEB)

    Pollnac, Richard B., E-mail: pollnac3@gmail.com [Department of Marine Affairs, University of Rhode Island, 1 Greenhouse Rd., Kingston, RI 02881 (United States); Seara, Tarsila, E-mail: tarsila.seara@noaa.gov [National Marine Fisheries Service, NOAA, Northeast Fisheries Science Center, Social Sciences Branch, 28 Tarzwell Dr., Narragansett, RI 02882 (United States); Colburn, Lisa L., E-mail: lisa.l.colburn@noaa.gov [National Marine Fisheries Service, NOAA, Northeast Fisheries Science Center, Social Sciences Branch, 28 Tarzwell Dr., Narragansett, RI 02882 (United States); Jepson, Michael, E-mail: michael.jepson@noaa.gov [National Marine Fisheries Service, NOAA, Southeast Fisheries Science Center, Social Sciences Branch, 263 13th Avenue South, Saint Petersburg, FL 33701 (United States)

    2015-11-15

    Increased concern with the impacts that changing coastal environments can have on coastal fishing communities led to a recent effort by NOAA Fisheries social scientists to develop a set of indicators of social vulnerability and resilience for the U.S. Southeast and Northeast coastal communities. A goal of the NOAA Fisheries social vulnerability and resilience indicator program is to support time and cost effective use of readily available data in furtherance of both social impact assessments of proposed changes to fishery management regulations and climate change adaptation planning. The use of the indicators to predict the response to change in coastal communities would be enhanced if community level analyses could be grouped effectively. This study examines the usefulness of combining 1130 communities into 35 relevant subgroups by comparing results of a numerical taxonomy with data collected by interview methods, a process herein referred to as “ground-truthing.” The validation of the taxonomic method by the method of ground-truthing indicates that the clusters are adequate to be used to select communities for in-depth research. - Highlights: • We develop a taxonomy of fishing communities based on vulnerability indicators. • We validate the community clusters through the use of surveys (“ground-truthing”). • Clusters differ along important aspects of fishing community vulnerability. • Clustering communities allows for accurate and timely social impact assessments.

  19. Taxonomy of USA east coast fishing communities in terms of social vulnerability and resilience

    International Nuclear Information System (INIS)

    Pollnac, Richard B.; Seara, Tarsila; Colburn, Lisa L.; Jepson, Michael

    2015-01-01

    Increased concern with the impacts that changing coastal environments can have on coastal fishing communities led to a recent effort by NOAA Fisheries social scientists to develop a set of indicators of social vulnerability and resilience for the U.S. Southeast and Northeast coastal communities. A goal of the NOAA Fisheries social vulnerability and resilience indicator program is to support time and cost effective use of readily available data in furtherance of both social impact assessments of proposed changes to fishery management regulations and climate change adaptation planning. The use of the indicators to predict the response to change in coastal communities would be enhanced if community level analyses could be grouped effectively. This study examines the usefulness of combining 1130 communities into 35 relevant subgroups by comparing results of a numerical taxonomy with data collected by interview methods, a process herein referred to as “ground-truthing.” The validation of the taxonomic method by the method of ground-truthing indicates that the clusters are adequate to be used to select communities for in-depth research. - Highlights: • We develop a taxonomy of fishing communities based on vulnerability indicators. • We validate the community clusters through the use of surveys (“ground-truthing”). • Clusters differ along important aspects of fishing community vulnerability. • Clustering communities allows for accurate and timely social impact assessments

  20. Gonad development in Midas cichlids and the evolution of sex change in fishes.

    Science.gov (United States)

    Oldfield, Ronald G

    2011-01-01

    Some fishes mature and function as one sex and later transform to the other sex in response to social interactions. Previous evidence suggested that a change in developmental timing may be involved in the evolution of adult sex change in fishes. The most recent support for this idea came from reports that sex in the Midas cichlid, Amphilophus citrinellus, was determined by social conditions experienced at the juvenile stage. Differentiation as a male was reported to be dependent on large body size relative to group-mates, and thought to be mediated through aggressive interactions. Here I demonstrate that socially controlled sex determination does not occur as was originally reported. Previously, I found that sex was not associated with body size in juveniles either in nature or in captivity. Similarly, I found no association between aggressive behavior and sex in juveniles. I later demonstrated that socially controlled sex determination does not typically occur in the Midas cichlid and closely related species and supported an alternative mechanism to explain large body size in adult males. Finally, in the current study I analyze gonad histology of fish from the same population used by the original authors and lay to rest the idea of socially controlled sex determination in this species. Recent observations of socially controlled sex determination in juveniles of species that typically change sex at the adult stage are examples of phenotypic plasticity, not genetic variation. Therefore, juvenile socially controlled sex determination does not support a theory that a change in developmental timing is involved in the evolution of adult sex change in fishes. © 2011 Wiley Periodicals, Inc.

  1. Why the short face? Developmental disintegration of the neurocranium drives convergent evolution in neotropical electric fishes.

    Science.gov (United States)

    Evans, Kory M; Waltz, Brandon; Tagliacollo, Victor; Chakrabarty, Prosanta; Albert, James S

    2017-03-01

    Convergent evolution is widely viewed as strong evidence for the influence of natural selection on the origin of phenotypic design. However, the emerging evo-devo synthesis has highlighted other processes that may bias and direct phenotypic evolution in the presence of environmental and genetic variation. Developmental biases on the production of phenotypic variation may channel the evolution of convergent forms by limiting the range of phenotypes produced during ontogeny. Here, we study the evolution and convergence of brachycephalic and dolichocephalic skull shapes among 133 species of Neotropical electric fishes (Gymnotiformes: Teleostei) and identify potential developmental biases on phenotypic evolution. We plot the ontogenetic trajectories of neurocranial phenotypes in 17 species and document developmental modularity between the face and braincase regions of the skull. We recover a significant relationship between developmental covariation and relative skull length and a significant relationship between developmental covariation and ontogenetic disparity. We demonstrate that modularity and integration bias the production of phenotypes along the brachycephalic and dolichocephalic skull axis and contribute to multiple, independent evolutionary transformations to highly brachycephalic and dolichocephalic skull morphologies.

  2. Challenges in using fish communities for assessing the ecological ...

    African Journals Online (AJOL)

    2009-10-02

    Oct 2, 2009 ... context of a Reserve determination process, in order to comply ... natural conditions and a Category F represents a critically- ... Define ecological categories and recommend one ... that the Seekoei River experiences surface flow for approxi- ... To apply the FRAI model to the acquired fish data, the 8 steps.

  3. Exploring fish microbial communities to mitigate emerging diseases in aquaculture

    NARCIS (Netherlands)

    Bruijn, de Irene; Liu, Yiying; Wiegertjes, Geert F.; Raaijmakers, Jos M.

    2018-01-01

    Aquaculture is the fastest growing animal food sector worldwide and expected to further increase to feed the growing human population. However, existing and (re-)emerging diseases are hampering fish and shellfish cultivation and yield. For many diseases, vaccination protocols are not in place and

  4. Women fishing activities in rural communities of Epe Local ...

    African Journals Online (AJOL)

    Women are not aware of fishery extension activities in the area and the fisherwomen faced different types of problems in their fishery activities. However, to improve fishery activities by women in the area, extension agents should organize training workshops for the women on how to construct and mend fishing nets and ...

  5. Phylogenetic perspectives on the evolution of functional hermaphroditism in teleost fishes.

    Science.gov (United States)

    Erisman, Brad E; Petersen, Christopher W; Hastings, Philip A; Warner, Robert R

    2013-10-01

    Hermaphroditism is taxonomically widespread among teleost fishes and takes on many forms including simultaneous, protogynous, and protandrous hermaphroditism, bidirectional sex change, and androdioecy. The proximate mechanisms that influence the timing, incidence, and forms of hermaphroditism in fishes are supported by numerous theoretical and empirical studies on their mating systems and sexual patterns, but few have examined aspects of sex-allocation theory or the evolution of hermaphroditism for this group within a strict phylogenetic context. Fortunately, species-level phylogenetic reconstructions of the evolutionary history of many lineages of fishes have emerged, providing opportunities for understanding fine-scale evolutionary pathways and transformations of sex allocation. Examinations of several families of fishes with adequate data on phylogeny, patterns of sex allocation, mating systems, and with some form of hermaphroditism reveal that the evolution and expression of protogyny and other forms of sex allocation show little evidence of phylogenetic inertia within specific lineages but rather are associated with particular mating systems in accordance with prevalent theories about sex allocation. Transformations from protogyny to gonochorism in groupers (Epinephelidae), seabasses (Serranidae), and wrasses and parrotfishes (Labridae) are associated with equivalent transformations in the structure of mating groups from spawning of pairs to group spawning and related increases in sperm competition. Similarly, patterns of protandry, androdioecy, simultaneous hermaphroditism, and bidirectional sex change in other lineages (Aulopiformes, Gobiidae, and Pomacentridae) match well with particular mating systems in accordance with sex-allocation theory. Unlike other animals and plants, we did not find evidence that transitions between hermaphroditism and gonochorism required functional intermediates. Two instances in which our general conclusions might not hold

  6. Seasonal fish and invertebrate communities in three northern California estuaries

    OpenAIRE

    Osborn, Katherine

    2017-01-01

    The majority of Northern California estuaries are small, flooded, river valleys that are largely unstudied due to their small sizes and remote locations. Yet these estuaries serve as important nursery areas for many marine fish species including rockfish, flatfish, smelt, and herring, and they are vital to anadromous species such as Chinook Salmon (Oncorhynchus tshawytscha) and Steelhead (O. mykiss). I sampled the summer and winter fish and invertebrate communities of the Big, Mad, and Ten Mi...

  7. Report of the Workshop on Population Characteristics and Change in Coastal Fishing Communities: Madras, India, 10-14 March 1997

    National Research Council Canada - National Science Library

    1997-01-01

    This workshop brought together 23 fisheries scientists/socio-economists and population experts with experience in demographic and population research on fishing communities and in fisheries management...

  8. Relationship of dietary intake of fish and non-fish selenium to serum lipids in Japanese rural coastal community.

    Science.gov (United States)

    Miyazaki, Yukiko; Koyama, Hiroshi; Nojiri, Masami; Suzuki, Shosuke

    2002-01-01

    Several studies have suggested that dietary selenium deficiency may be associated with an increased risk of coronary heart disease (CHD). In the present study, 55 men and 71 women were selected from participants in a health examination in a rural coastal community in Japan. The mean dietary selenium intake calculated from the simple food frequency questionnaire (SFFQ) was 127.5 micrograms/day. Fish was the major source of dietary selenium and it contributed to 68.7% of the daily total. HDL cholesterol was higher in the middle selenium intake group and in the high selenium intake group than in the low selenium intake group in all subjects and for males, and a significant difference was found between the middle selenium intake group and the low selenium intake group. The atherogenic index was significantly higher in the low selenium intake group than in the middle selenium intake group and in the high selenium intake group in males. GPx activity, total cholesterol and triacylglycerols did not show any significant differences among the three different selenium intake groups. Dietary intake of non-fish Se had a positive correlation with HDL cholesterol, and an inverse correlation with the atherogenic index in all subjects and for females. On the other hand, dietary intake of fish-Se had no relationship with any serum lipids. Non-fish Se is an important factor in selenium status for the prevention of CHD.

  9. Does human pressure affect the community structure of surf zone fish in sandy beaches?

    Science.gov (United States)

    Costa, Leonardo Lopes; Landmann, Júlia G.; Gaelzer, Luiz R.; Zalmon, Ilana R.

    2017-01-01

    Intense tourism and human activities have resulted in habitat destruction in sandy beach ecosystems with negative impacts on the associated communities. To investigate whether urbanized beaches affect surf zone fish communities, fish and their benthic macrofaunal prey were collected during periods of low and high human pressure at two beaches on the Southeastern Brazilian coast. A BACI experimental design (Before-After-Control-Impact) was adapted for comparisons of tourism impact on fish community composition and structure in urbanized, intermediate and non-urbanized sectors of each beach. At the end of the summer season, we observed a significant reduction in fish richness, abundance, and diversity in the high tourist pressure areas. The negative association between visitors' abundance and the macrofaunal density suggests that urbanized beaches are avoided by surf zone fish due to higher human pressure and the reduction of food availability. Our results indicate that surf zone fish should be included in environmental impact studies in sandy beaches, including commercial species, e.g., the bluefish Pomatomus saltatrix. The comparative results from the less urbanized areas suggest that environmental zoning and visitation limits should be used as effective management and preservation strategies on beaches with high conservation potential.

  10. PCDD and PCDF exposures among fishing community through intake of fish and shellfish from the Straits of Malacca.

    Science.gov (United States)

    Azlan, Azrina; Nasir, Nurul Nadiah Mohamad; Shamsudin, Norashikin; Rahman, Hejar Abdul; Khoo, Hock Eng; Razman, Muhammad Rizal

    2015-07-21

    Exposure to PCDD/PCDF (dioxin and furan) through consumption of fish and shellfish is closely related to the occurrence of skin diseases, such as chloracne and hyperpigmentation. This study aimed to determine the exposure of PCDD/PCDF and its congeners in fish and shellfish obtained from different regions of the Straits of Malacca among the fishing community. The risk of fish and shellfish consumption and exposure to PCDD/PCDF among fishermen living in coastal areas of the Straits were evaluated based on a cross-sectional study involving face to face interviews, blood pressure and anthropometric measurements, and administration of food frequency questionnaires (FFQ). Skin examination was done by a dermatologist after the interview session. Determination of 17 congeners of PCDD/PCDF in 48 composite samples of fish and shellfish was performed based on HRGC/HRMS analysis. The total PCDD/PCDF in the seafood samples ranged from 0.12 to 1.24 pg WHO-TEQ/g fresh weight (4.6-21.8 pg WHO-TEQ/g fat). No significant difference found for the concentrations of PCDD/PCDF between the same types of seafood samples obtained from the three different regions. The concentrations of the most potent congener, 2,3,7,8-TCDD in the seafood samples ranged from 0.01 to 0.11 pg WHO-TEQ/g FW (1.9 pg WHO-TEQ/g fat). A positive moderate correlation was found between the fat contents and concentrations of PCDD/PCDF determined in the seafood samples. The total PCDD/PCDF in all seafood samples were below the 1 pg WHO-TEQ/g fresh weight, with the exception of grey eel-catfish. The respondents had consumed fish and shellfish with the amounts ranging between 2.02 g and 44.06 g per person per day. The total PCDD/PCDF exposures through consumption of fish and shellfish among the respondents were between 0.01 and 0.16 pg WHO-TEQ/kg BW/day. With regard to the two PCDD/PCDF-related skin diseases, no chloracne case was found among the respondents, but 2.2% of the respondents were diagnosed to have

  11. Habitat loss and gain: Influence on habitat attractiveness for estuarine fish communities

    Science.gov (United States)

    Amorim, Eva; Ramos, Sandra; Elliott, Michael; Franco, Anita; Bordalo, Adriano A.

    2017-10-01

    Habitat structure and complexity influence the structuring and functioning of fish communities. Habitat changes are one of the main pressures affecting estuarine systems worldwide, yet the degree and rate of change and its impact on fish communities is still poorly understood. In order to quantify historical modifications in habitat structure, an ecohydrological classification system using physiotopes, i.e. units with homogenous abiotic characteristics, was developed for the lower Lima estuary (NW Portugal). Field data, aerial imagery, historical maps and interpolation methods were used to map input variables, including bathymetry, substratum (hard/soft), sediment composition, hydrodynamics (current velocity) and vegetation coverage. Physiotopes were then mapped for the years of 1933 and 2013 and the areas lost and gained over the 80 years were quantified. The implications of changes for the benthic and demersal fish communities using the lower estuary were estimated using the attractiveness to those communities of each physiotope, while considering the main estuarine habitat functions for fish, namely spawning, nursery, feeding and refuge areas and migratory routes. The lower estuary was highly affected due to urbanisation and development and, following a port/harbour expansion, its boundary moved seaward causing an increase in total area. Modifications led to the loss of most of its sandy and saltmarsh intertidal physiotopes, which were replaced by deeper subtidal physiotopes. The most attractive physiotopes for fish (defined as the way in which they supported the fish ecological features) decreased in area while less attractive ones increased, producing an overall lower attractiveness of the studied area in 2013 compared to 1933. The implications of habitat alterations for the fish using the estuary include potential changes in the nursery carrying capacity and the functioning of the fish community. The study also highlighted the poor knowledge of the impacts of

  12. Community structure and seasonal variation of an inshore demersal fish community at Goa, west coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Ansari, Z.A.; Chatterji, A.; Ingole, B.S.; Sreepada, R.A.; Rivonker, C.U.; Parulekar, A.H.

    as an environment for nekton. Fish Community Ecology in Estuaries aud Coastal Lagoons: Towards an Ecosystem Integration (Yanez-Arancibia, A., ed.). DR(R) UNAM Press Mexico, Mexico City, pp. 17-34. Fisher, W. & Biachi, G. 1984 FAO Species Indenttjkation Sheets...

  13. Temporal dynamics of fish communities on an exposed shoreline in Hawaii

    Science.gov (United States)

    Friedlander, A.M.; Parrish, J.D.

    1998-01-01

    Environmental conditions on higher latitude coral reefs can be extremely variable, and may structure fish communities in ways not previously observed in the more stable, low latitude locations where communities have usually been studied. Temporal changes in fish community structure were examined in an intensive two-year study of the reef fishes of Hanalei Bay, Kauai, Hawaii. Hanalei Bay is directly exposed to winter swells with high surf, as well as frequent heavy winter rainfall and high river discharge. Twenty-two transects (25 x 5 m) were established in a wide variety of habitats and censused monthly (N = 1052 censuses). Over 121 000 sightings of individuals from 150 species were made during the study. Seasonal patterns in number of species, number of individuals, species diversity, and evenness were observed, with winter values usually lowest. Values of these ensemble variables tended to be higher at deeper sites and at sites with greater habitat complexity. Surf height and degree of wave exposure were negatively correlated with several measures of community organization. Groups of fishes with different levels of spatial mobility tended to occupy depths consistent with their various abilities to respond to events of heavy weather. The rank abundance of fish taxa tended to be more stable seasonally at sites with less exposure to high wave energy. These seasonal effects may suggest some type of short-range movement from more exposed and monotypic habitats to locations that are deeper or otherwise provide refuge from seasonally heavy seas.

  14. Fish community in the chronically polluted middle Elbe River

    Czech Academy of Sciences Publication Activity Database

    Jurajda, Pavel; Janáč, Michal; Valová, Zdenka; Streck, G.

    2010-01-01

    Roč. 59, č. 2 (2010), s. 157-168 ISSN 0139-7893 R&D Projects: GA MŠk LC522 Grant - others:6th Framework Programme EC(XE) MODELKEY (511237-GOCE) Institutional research plan: CEZ:AV0Z60930519 Keywords : fish * bioindicators * pollution * channelization Subject RIV: EG - Zoology Impact factor: 0.548, year: 2010 http://www.ivb.cz/folia/59/2/9_ms_1491_jurajda.pdf

  15. Phylogenetic community structure: temporal variation in fish assemblage

    OpenAIRE

    Santorelli, Sergio; Magnusson, William; Ferreira, Efrem; Caramaschi, Erica; Zuanon, Jansen; Amadio, Sidnéia

    2014-01-01

    Hypotheses about phylogenetic relationships among species allow inferences about the mechanisms that affect species coexistence. Nevertheless, most studies assume that phylogenetic patterns identified are stable over time. We used data on monthly samples of fish from a single lake over 10 years to show that the structure in phylogenetic assemblages varies over time and conclusions depend heavily on the time scale investigated. The data set was organized in guild structures and temporal scales...

  16. Longitudinal structure in temperate stream fish communities: evaluating conceptual models with temporal data

    Science.gov (United States)

    Roberts, James H.; Hitt, Nathaniel P.

    2010-01-01

    Five conceptual models of longitudinal fish community organization in streams were examined: (1) niche diversity model (NDM), (2) stream continuum model (SCM), (3) immigrant accessibility model (IAM), (4) environmental stability model (ESM), and (5) adventitious stream model (ASM). We used differences among models in their predictions about temporal species turnover, along with five spatiotemporal fish community data sets, to evaluate model applicability. Models were similar in predicting a positive species richness–stream size relationship and longitudinal species nestedness, but differed in predicting either similar temporal species turnover throughout the stream continuum (NDM, SCM), higher turnover upstream (IAM, ESM), or higher turnover downstream (ASM). We calculated measures of spatial and temporal variation from spatiotemporal fish data in five wadeable streams in central and eastern North America spanning 34–68 years (French Creek [New York], Piasa Creek [Illinois], Spruce Run [Virginia], Little Stony Creek [Virginia], and Sinking Creek [Virginia]). All streams exhibited substantial species turnover (i.e., at least 27% turnover in stream-scale species pools), in contrast to the predictions of the SCM. Furthermore, community change was greater in downstream than upstream reaches in four of five streams. This result is most consistent with the ASM and suggests that downstream communities are strongly influenced by migrants to and from species pools outside the focal stream. In Sinking Creek, which is isolated from external species pools, temporal species turnover (via increased richness) was higher upstream than downstream, which is a pattern most consistent with the IAM or ESM. These results corroborate the hypothesis that temperate stream habitats and fish communities are temporally dynamic and that fish migration and environmental disturbances play fundamental roles in stream fish community organization.

  17. Modelling an exploited marine fish community with 15 parameters - results from a simple size-based model

    NARCIS (Netherlands)

    Pope, J.G.; Rice, J.C.; Daan, N.; Jennings, S.; Gislason, H.

    2006-01-01

    To measure and predict the response of fish communities to exploitation, it is necessary to understand how the direct and indirect effects of fishing interact. Because fishing and predation are size-selective processes, the potential response can be explored with size-based models. We use a

  18. Impact of habitat diversity on the sampling effort required for the assessment of river fish communities and IBI

    NARCIS (Netherlands)

    Van Liefferinge, C.; Simoens, I.; Vogt, C.; Cox, T.J.S.; Breine, J.; Ercken, D.; Goethals, P.; Belpaire, C.; Meire, P.

    2010-01-01

    The spatial variation in the fish communities of four small Belgian rivers with variable habitat diversity was investigated by electric fishing to define the minimum sampling distance required for optimal fish stock assessment and determination of the Index of Biotic Integrity. This study shows that

  19. Correlated evolution of thermal niches and functional physiology in tropical freshwater fishes.

    Science.gov (United States)

    Culumber, Zachary W; Tobler, Michael

    2018-05-01

    The role of ecology in phenotypic and species diversification is widely documented. Nonetheless, numerous nonadaptive processes can shape realized niches and phenotypic variation in natural populations, complicating inferences about adaptive evolution at macroevolutionary scales. We tested for evolved differences in thermal tolerances and their association with the realized thermal niche (including metrics describing diurnal and seasonal patterns of temperature extremes and variability) across a genus of tropical freshwater fishes reared in a standardized environment. There was limited evolution along the thermal niche axis associated with variation in maximum temperature and in upper thermal limits. In contrast, there was considerable diversification along the first major axis of the thermal niche associated with minimum temperatures and in lower thermal limits. Across our adaptive landscape analyses, 70% of species exhibited evidence of divergence in thermal niches. Most importantly, the first two major axes of thermal niche variation were significantly correlated with variation in lower thermal limits. Our results indicate adaptation to divergent thermal niches and adaptive evolution of related functional traits, and highlight the importance of divergence in lower thermal limits for the evolution of tropical biodiversity. © 2018 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2018 European Society For Evolutionary Biology.

  20. Trait-based approaches in the analysis of stream fish communities

    Science.gov (United States)

    Frimpong, Emmanuel; Angermeier, Paul

    2010-01-01

    Species traits are used to study the functional organization of fish communities for a range of reasons, from simply reducing data dimensionality to providing mechanistic explanations for observed variation in communities. Ecological and life history traits have been used to understand the basic ecology of fishes and predict (1) species and community responses to habitat and climate alteration, and (2) species extinction, species invasion, and community homogenization. Many approaches in this arena have been developed during the past three decades, but they often have not been integrated with related ecological concepts or subdisciplines, which has led to confusion in terminology. We review 102 studies of species traits and then summarize patterns in traits being used and questions being addressed with trait-based approaches. Overall, studies of fish–habitat relationships that apply habitat templates and hierarchical filters dominate our sample; the most frequently used traits are related to feeding. We define and show the relationships among key terms such as fundamental and realized niches; functional traits, performance, and fitness; tactic, trait-state, syndromes, and strategies; and guilds and functional groups. We propose accelerating research to (1) quantify trait plasticity, (2) identify traits useful for testing ecological hypotheses, (3) model habitat and biotic interactions in communities while explicitly accounting for phylogenetic relationships, (4) explore how traits control community assembly, and (5) document the importance of traits in fish– community responses to anthropogenic change and in delivering ecosystem services. Further synthesis of these topics is still needed to develop concepts, models, and principles that can unify the disparate approaches taken in trait-based analysis of fish communities, link fish community ecology to general community ecology, and inform sustainable management of ecosystems.

  1. The importance of sponges and mangroves in supporting fish communities on degraded coral reefs in Caribbean Panama.

    Science.gov (United States)

    Seemann, Janina; Yingst, Alexandra; Stuart-Smith, Rick D; Edgar, Graham J; Altieri, Andrew H

    2018-01-01

    Fish communities associated with coral reefs worldwide are threatened by habitat degradation and overexploitation. We assessed coral reefs, mangrove fringes, and seagrass meadows on the Caribbean coast of Panama to explore the influences of their proximity to one another, habitat cover, and environmental characteristics in sustaining biomass, species richness and trophic structure of fish communities in a degraded tropical ecosystem. We found 94% of all fish across all habitat types were of small body size (≤10 cm), with communities dominated by fishes that usually live in habitats of low complexity, such as Pomacentridae (damselfishes) and Gobiidae (gobies). Total fish biomass was very low, with the trend of small fishes from low trophic levels over-represented, and top predators under-represented, relative to coral reefs elsewhere in the Caribbean. For example, herbivorous fishes comprised 27% of total fish biomass in Panama relative to 10% in the wider Caribbean, and the small parrotfish Scarus iseri comprised 72% of the parrotfish biomass. We found evidence that non-coral biogenic habitats support reef-associated fish communities. In particular, the abundance of sponges on a given reef and proximity of mangroves were found to be important positive correlates of reef fish species richness, biomass, abundance and trophic structure. Our study indicates that a diverse fish community can persist on degraded coral reefs, and that the availability and arrangement within the seascape of other habitat-forming organisms, including sponges and mangroves, is critical to the maintenance of functional processes in such ecosystems.

  2. Overestimating fish counts by non-instantaneous visual censuses: consequences for population and community descriptions.

    Directory of Open Access Journals (Sweden)

    Christine Ward-Paige

    Full Text Available BACKGROUND: Increasingly, underwater visual censuses (UVC are used to assess fish populations. Several studies have demonstrated the effectiveness of protected areas for increasing fish abundance or provided insight into the natural abundance and structure of reef fish communities in remote areas. Recently, high apex predator densities (>100,000 individuals x km(-2 and biomasses (>4 tonnes x ha(-1 have been reported for some remote islands suggesting the occurrence of inverted trophic biomass pyramids. However, few studies have critically evaluated the methods used for sampling conspicuous and highly mobile fish such as sharks. Ideally, UVC are done instantaneously, however, researchers often count animals that enter the survey area after the survey has started, thus performing non-instantaneous UVC. METHODOLOGY/PRINCIPAL FINDINGS: We developed a simulation model to evaluate counts obtained by divers deploying non-instantaneous belt-transect and stationary-point-count techniques. We assessed how fish speed and survey procedure (visibility, diver speed, survey time and dimensions affect observed fish counts. Results indicate that the bias caused by fish speed alone is huge, while survey procedures had varying effects. Because the fastest fishes tend to be the largest, the bias would have significant implications on their biomass contribution. Therefore, caution is needed when describing abundance, biomass, and community structure based on non-instantaneous UVC, especially for highly mobile species such as sharks. CONCLUSIONS/SIGNIFICANCE: Based on our results, we urge that published literature state explicitly whether instantaneous counts were made and that survey procedures be accounted for when non-instantaneous counts are used. Using published density and biomass values of communities that include sharks we explore the effect of this bias and suggest that further investigation may be needed to determine pristine shark abundances and the

  3. Is Fish Farming an Illusion for Lake Malawi Riparian Communities under Environmental Changes?

    Directory of Open Access Journals (Sweden)

    Moses Majid Limuwa

    2018-05-01

    Full Text Available Global environmental changes have negatively affected many food systems while the demand for food has continued to rise. An urgent need exists to identify other sustainable means of producing food. This is a case in Malawi, where capture fisheries and agriculture are not supplying sufficient food. Fish farming food systems by communities who rely on inland fisheries have not been evaluated. Therefore, a study was conducted in two phases: January 2016 to May 2016 and in July 2017 to evaluate if fish farming could sustainably support livelihoods of Lake Malawi riparian communities. We used mixed methods to collect and analyze data. The data collection methods included explorative surveys, household survey interviews, focus group discussion and key informant interviews. Qualitative data was analyzed using content analysis for themes. This identified themes that were quantitatively analyzed using descriptive and inferential statistics. We observed that fish farming was dominated by men and also not the main occupation for the respondents despite owning fishponds. The respondents have water and land, which are prerequisite for any farming. The study also observed fish farming production challenges related to quality fingerlings, formulated diets, and extension services. Cases of food insecurity amongst the respondents were also prevalent due to lack of food to cover the entire year. Weak synergies existed between fish farming and agriculture restricting bio-resource flow and water usage between these two food systems, meaning the outcomes of the food systems provide unsustainable diets. Furthermore, water availability, money spent on food, and cassava cropping increased fish farming participation. Whereas operating a bicycle taxi, casual labor, former fish farming, as well as application of agricultural wastes negatively affected fish farming. On the other hand, extreme weather events (increased incidences of droughts and floods attributed to inter

  4. Spatial patterns of fish communities along two estuarine gradients in southern Florida

    Science.gov (United States)

    Green, D.P.J.; Trexler, J.C.; Lorenz, J.J.; McIvor, C.C.; Philippi, T.

    2006-01-01

    In tropical and subtropical estuaries, gradients of primary productivity and salinity are generally invoked to explain patterns in community structure and standing crops of fishes. We documented spatial and temporal patterns in fish community structure and standing crops along salinity and nutrient gradients in two subtropical drainages of Everglades National Park, USA. The Shark River drains into the Gulf of Mexico and experiences diurnal tides carrying relatively nutrient enriched waters, while Taylor River is more hydrologically isolated by the oligohaline Florida Bay and experiences no discernable lunar tides. We hypothesized that the more nutrient enriched system would support higher standing crops of fishes in its mangrove zone. We collected 50 species of fish from January 2000 to April 2004 at six sampling sites spanning fresh to brackish salinities in both the Shark and Taylor River drainages. Contrary to expectations, we observed lower standing crops and density of fishes in the more nutrient rich tidal mangrove forest of the Shark River than in the less nutrient rich mangrove habitats bordering the Taylor River. Tidal mangrove habitats in the Shark River were dominated by salt-tolerant fish and displayed lower species richness than mangrove communities in the Taylor River, which included more freshwater taxa and yielded relatively higher richness. These differences were maintained even after controlling for salinity at the time of sampling. Small-scale topographic relief differs between these two systems, possibly created by tidal action in the Shark River. We propose that this difference in topography limits movement of fishes from upstream marshes into the fringing mangrove forest in the Shark River system, but not the Taylor River system. Understanding the influence of habitat structure, including connectivity, on aquatic communities is important to anticipate effects of construction and operational alternatives associated with restoration of the

  5. Fish communities associated with cold-water corals vary with depth and substratum type

    Science.gov (United States)

    Milligan, Rosanna J.; Spence, Gemma; Roberts, J. Murray; Bailey, David M.

    2016-08-01

    Understanding the processes that drive the distribution patterns of organisms and the scales over which these processes operate are vital when considering the effective management of species with high commercial or conservation value. In the deep sea, the importance of scleractinian cold-water corals (CWCs) to fish has been the focus of several studies but their role remains unclear. We propose this may be due to the confounding effects of multiple drivers operating over multiple spatial scales. The aims of this study were to investigate the role of CWCs in shaping fish community structure and individual species-habitat associations across four spatial scales in the NE Atlantic ranging from "regions" (separated by >500 km) to "substratum types" (contiguous). Demersal fish and substratum types were quantified from three regions: Logachev Mounds, Rockall Bank and Hebrides Terrace Seamount (HTS). PERMANOVA analyses showed significant differences in community composition between all regions which were most likely caused by differences in depths. Within regions, significant variation in community composition was recorded at scales of c. 20-3500 m. CWCs supported significantly different fish communities to non-CWC substrata at Rockall Bank, Logachev and the HTS. Single-species analyses using generalised linear mixed models showed that Sebastes sp. was strongly associated with CWCs at Rockall Bank and that Neocyttus helgae was more likely to occur in CWCs at the HTS. Depth had a significant effect on several other fish species. The results of this study suggest that the importance of CWCs to fish is species-specific and depends on the broader spatial context in which the substratum is found. The precautionary approach would be to assume that CWCs are important for associated fish, but must acknowledge that CWCs in different depths will not provide redundancy or replication within spatially-managed conservation networks.

  6. Effect of multiple electro-fishing on determining the structure of fish communities in small streams

    Czech Academy of Sciences Publication Activity Database

    Humpl, Martin; Lusk, Stanislav

    2006-01-01

    Roč. 55, č. 3 (2006), s. 315-322 ISSN 0139-7893 R&D Projects: GA MŽP SM/6/3/05 Institutional research plan: CEZ:AV0Z60930519 Keywords : electro- fishing efficacy * repeated sampling * probability of detection * species richness Subject RIV: EH - Ecology, Behaviour Impact factor: 0.529, year: 2006 http://www.ivb.cz/folia/55/3/315-322.pdf

  7. Boys Go Fishing, Girls Work at Home: Gender Roles, Poverty and Unequal School Access among Semi-Nomadic Fishing Communities in South Western Madagascar

    Science.gov (United States)

    Nascimento Moreira, Catarina; Rabenevanana, Man Wai; Picard, David

    2017-01-01

    Drawing from data gathered in South Western Madagascar in 2011, the work explores the combination of poverty and traditional gender roles as a critical factor in determining unequal school access among young people from semi-nomadic fishing communities. It demonstrates that from the age of early puberty, most boys go fishing with their fathers and…

  8. Biogeographic Patterns of Reef Fish Communities in the Saudi Arabian Red Sea

    KAUST Repository

    Roberts, May B.

    2014-12-01

    As a region renowned for high biodiversity, endemism and extreme temperature and salinity levels, the Red Sea is of high ecological interest. Despite this, there is relatively little literature on basic broad scale characteristics of the biodiversity or overall reef fish communities and how they change across latitude. We conducted visual transects recording the abundance of over 200 species of fish from 45 reefs spanning over 1000 km of Saudi Arabian coastline and used hierarchical cluster analysis to find that for combined depths from 0m-10m across this geographical range, the reef fish communities are relatively similar. However we find some interesting patterns both at the community level across depth and latitude as well as in endemic community distributions. We find that the communities, much like the environmental factors, shift gradually along latitude but do not show distinct clusters within the range we surveyed (from Al-Wajh in the north to the Farasan Banks in the south). Numbers of endemic species tend to be higher in the Thuwal region and further south. This type of baseline data on reef fish distribution and possible factors that may influence their ranges in the Red Sea are critical for future scientific studies as well as effective monitoring and in the face of the persistent anthropogenic influences such as coastal development, overfishing and climate change.

  9. Assessing historical fish community composition using surveys, historical collection data, and species distribution models.

    Science.gov (United States)

    Labay, Ben; Cohen, Adam E; Sissel, Blake; Hendrickson, Dean A; Martin, F Douglas; Sarkar, Sahotra

    2011-01-01

    Accurate establishment of baseline conditions is critical to successful management and habitat restoration. We demonstrate the ability to robustly estimate historical fish community composition and assess the current status of the urbanized Barton Creek watershed in central Texas, U.S.A. Fish species were surveyed in 2008 and the resulting data compared to three sources of fish occurrence information: (i) historical records from a museum specimen database and literature searches; (ii) a nearly identical survey conducted 15 years earlier; and (iii) a modeled historical community constructed with species distribution models (SDMs). This holistic approach, and especially the application of SDMs, allowed us to discover that the fish community in Barton Creek was more diverse than the historical data and survey methods alone indicated. Sixteen native species with high modeled probability of occurrence within the watershed were not found in the 2008 survey, seven of these were not found in either survey or in any of the historical collection records. Our approach allowed us to more rigorously establish the true baseline for the pre-development fish fauna and then to more accurately assess trends and develop hypotheses regarding factors driving current fish community composition to better inform management decisions and future restoration efforts. Smaller, urbanized freshwater systems, like Barton Creek, typically have a relatively poor historical biodiversity inventory coupled with long histories of alteration, and thus there is a propensity for land managers and researchers to apply inaccurate baseline standards. Our methods provide a way around that limitation by using SDMs derived from larger and richer biodiversity databases of a broader geographic scope. Broadly applied, we propose that this technique has potential to overcome limitations of popular bioassessment metrics (e.g., IBI) to become a versatile and robust management tool for determining status of

  10. Temporal and geographic variation in fish communities of lower Cook Inlet, Alaska

    Science.gov (United States)

    Robards, Martin D.; Piatt, John F.; Kettle, Arthur B.; Abookire, Alisa A.

    1999-01-01

    Nearshore and shelf fish communities were studied in three areas of lower Cook Inlet, Alaska: the Barren Islands (oceanic and well-mixed waters), Kachemak Bay (mixed oceanic waters with significant freshwater runoff), and Chisik Island (estuarine waters). Fish were sampled with beach seines (n=413 sets) and midwater trawls (n=39 sets). We found that lower Cook Inlet supported a diverse nearshore fish community of at least 52 species. Fifty of these species were caught in Kachemak Bay, 24 at Chisik Island, and 12 at the Barren Islands. Pacific sand lance dominated Barren Islands and Kachemak Bay nearshore habitats, comprising 99% and 71% of total individuals, respectively. The nearshore Chisik Island fish community was not dominated by any one species; instead it exhibited higher diversity. These spatial differences appeared linked to local oceanographic regimes and sediment influx. Analysis of historical data revealed that the nearshore Kachemak Bay fish community changed significantly between 1976 and 1996, showing increased diversity and abundance in several taxa, notably gadids, salmonids, pleuronectids, and sculpins. Decadal differences appeared to be related to large-scale climate changes in the North Pacific. Catches of most taxa peaked in May-August, and were low during other months of the year. Several species were present for only part of the summer. Species composition of seine catches differed significantly between consecutive high and low tides, but not between consecutive sets or years. Midwater trawls took 26 species, 14 of which were present in Kachemak Bay, 19 near Chisik Island, and 7 at the Barren Islands. Community structures in shelf and nearshore waters were similar: diversity was high and abundance low at Chisik Island, whereas a few abundant species dominated at both Kachemak Bay and the Barren Islands. In addition, the low fish abundance near Chisik Island appeared to be related to declining seabird numbers at this colony.

  11. Non-Random Variability in Functional Composition of Coral Reef Fish Communities along an Environmental Gradient.

    Science.gov (United States)

    Plass-Johnson, Jeremiah G; Taylor, Marc H; Husain, Aidah A A; Teichberg, Mirta C; Ferse, Sebastian C A

    2016-01-01

    Changes in the coral reef complex can affect predator-prey relationships, resource availability and niche utilisation in the associated fish community, which may be reflected in decreased stability of the functional traits present in a community. This is because particular traits may be favoured by a changing environment, or by habitat degradation. Furthermore, other traits can be selected against because degradation can relax the association between fishes and benthic habitat. We characterised six important ecological traits for fish species occurring at seven sites across a disturbed coral reef archipelago in Indonesia, where reefs have been exposed to eutrophication and destructive fishing practices for decades. Functional diversity was assessed using two complementary indices (FRic and RaoQ) and correlated to important environmental factors (live coral cover and rugosity, representing local reef health, and distance from shore, representing a cross-shelf environmental gradient). Indices were examined for both a change in their mean, as well as temporal (short-term; hours) and spatial (cross-shelf) variability, to assess whether fish-habitat association became relaxed along with habitat degradation. Furthermore, variability in individual traits was examined to identify the traits that are most affected by habitat change. Increases in the general reef health indicators, live coral cover and rugosity (correlated with distance from the mainland), were associated with decreases in the variability of functional diversity and with community-level changes in the abundance of several traits (notably home range size, maximum length, microalgae, detritus and small invertebrate feeding and reproductive turnover). A decrease in coral cover increased variability of RaoQ while rugosity and distance both inversely affected variability of FRic; however, averages for these indices did not reveal patterns associated with the environment. These results suggest that increased

  12. Mercury exposure as a function of fish consumption in two Asian communities in coastal Virginia, USA.

    Science.gov (United States)

    Xu, Xiaoyu; Newman, Michael C

    2015-04-01

    Fish consumption and associated mercury exposure were explored for two Asian-dominated church communities in coastal Virginia and compared with that of two non-Asian church communities. Seafood-consumption rates for the Chinese (36.9 g/person/day) and Vietnamese (52.7 g/person/day) church communities were greater than the general United States fish-consumption rate (12.8 g/person/day). Correspondingly, hair mercury concentrations for people from the Chinese (0.52 µg/g) and the Vietnamese church (1.46 µg/g) were greater than the overall level for United States women (0.20 µg/g) but lower than the published World Health Organization exposure threshold (14 µg/g). A conventional regression model indicated a positive relationship between seafood consumption rates and hair mercury concentrations suggesting the importance of mercury exposure through seafood consumption. The annual-average daily methylmercury intake rate for the studied communities calculated by Monte Carlo simulations followed the sequence: Vietnamese community > Chinese community > non-Asian communities. Regardless, their daily methylmercury intake rates were all lower than the United States Environmental Protection Agency reference dose of 0.1 µg/kg body weight-day. In conclusion, fish-consumption patterns differed among communities, which resulted in different levels of mercury exposure. The greater seafood and mercury ingestion rates of studied Asian groups compared with non-Asian groups suggest the need for specific seafood consumption advice for ethnic communities in the United States. Otherwise the health benefits from fish consumption could be perceived as trivial compared with the ill-defined risk of mercury exposure.

  13. Conversion of sulfur compounds and microbial community in anaerobic treatment of fish and pork waste.

    Science.gov (United States)

    He, Ruo; Yao, Xing-Zhi; Chen, Min; Ma, Ruo-Chan; Li, Hua-Jun; Wang, Chen; Ding, Shen-Hua

    2018-04-07

    Volatile sulfur compounds (VSCs) are not only the main source of malodor in anaerobic treatment of organic waste, but also pose a threat to human health. In this study, VSCs production and microbial community was investigated during the anaerobic degradation of fish and pork waste. The results showed that after the operation of 245 days, 94.5% and 76.2% of sulfur compounds in the fish and pork waste was converted into VSCs. Among the detected VSCs including H 2 S, carbon disulfide, methanethiol, ethanethiol, dimethyl sulfide, dimethyl disulfide and dimethyl trisulfide, methanethiol was the major component with the maximum concentration of 4.54% and 3.28% in the fish and pork waste, respectively. The conversion of sulfur compounds including total sulfur, SO 4 2- -S, S 2- , methionine and cysteine followed the first-order kinetics. Miseq sequencing analysis showed that Acinetobacter, Clostridium, Proteus, Thiobacillus, Hyphomicrobium and Pseudomonas were the main known sulfur-metabolizing microorganisms in the fish and pork waste. The C/N value had most significant influence on the microbial community in the fish and pork waste. A main conversion of sulfur compounds with CH 3 SH as the key intermediate was firstly hypothesized during the anaerobic degradation of fish and pork waste. These findings are helpful to understand the conversion of sulfur compounds and to develop techniques to control ordor pollution in the anaerobic treatment of organic waste. Copyright © 2018. Published by Elsevier Ltd.

  14. Molecular evolution of ependymin and the phylogenetic resolution of early divergences among euteleost fishes.

    Science.gov (United States)

    Ortí, G; Meyer, A

    1996-04-01

    The rate and pattern of DNA evolution of ependymin, a single-copy gene coding for a highly expressed glycoprotein in the brain matrix of teleost fishes, is characterized and its phylogenetic utility for fish systematics is assessed. DNA sequences were determined from catfish, electric fish, and characiforms and compared with published ependymin sequences from cyprinids, salmon, pike, and herring. Among these groups, ependymin amino acid sequences were highly divergent (up to 60% sequence difference), but had surprisingly similar hydropathy profiles and invariant glycosylation sites, suggesting that functional properties of the proteins are conserved. Comparison of base composition at third codon positions and introns revealed AT-rich introns and GC-rich third codon positions, suggesting that the biased codon usage observed might not be due to mutational bias. Phylogenetic information content of third codon positions was surprisingly high and sufficient to recover the most basal nodes of the tree, in spite of the observation that pairwise distances (at third codon positions) were well above the presumed saturation level. This finding can be explained by the high proportion of phylogenetically informative nonsynonymous changes at third codon positions among these highly divergent proteins. Ependymin DNA sequences have established the first molecular evidence for the monophyly of a group containing salmonids and esociforms. In addition, ependymin suggests a sister group relationship of electric fish (Gymnotiformes) and Characiformes, constituting a significant departure from currently accepted classifications. However, relationships among characiform lineages were not completely resolved by ependymin sequences in spite of seemingly appropriate levels of variation among taxa and considerably low levels of homoplasy in the data (consistency index = 0.7). If the diversification of Characiformes took place in an "explosive" manner, over a relatively short period of time

  15. Ecomorphology of a size-structured tropical freshwater fish community

    NARCIS (Netherlands)

    Piet, G.J.

    1998-01-01

    Among nine species of a tropical community ecomorphological correlates were sought throughout ontogeny. Ontogenetic changes were distinguished by establishing six pre-defined size- classes. Morphometric data associated with feeding were compared by canonical correspondence analysis to dietary data.

  16. Trophic structure of a coastal fish community determined with diet and stable isotope analyses.

    Science.gov (United States)

    Malek, A J; Collie, J S; Taylor, D L

    2016-09-01

    A combination of dietary guild analysis and nitrogen (δ(15) N) and carbon (δ(13) C) stable-isotope analysis was used to assess the trophic structure of the fish community in Rhode Island and Block Island Sounds, an area off southern New England identified for offshore wind energy development. In the autumn of 2009, 2010 and 2011, stomach and tissue samples were taken from 20 fish and invertebrate species for analysis of diet composition and δ(15) N and δ(13) C signatures. The food chain in Rhode Island and Block Island Sounds comprises approximately four trophic levels within which the fish community is divided into distinct dietary guilds, including planktivores, benthivores, crustacivores and piscivores. Within these guilds, inter-species isotopic and dietary overlap is high, suggesting that resource partitioning or competitive interactions play a major role in structuring the fish community. Carbon isotopes indicate that most fishes are supported by pelagic phytoplankton, although there is evidence that benthic production also plays a role, particularly for obligate benthivores such as skates Leucoraja spp. This type of analysis is useful for developing an ecosystem-based approach to management, as it identifies species that act as direct links to basal resources as well as species groups that share trophic roles. © 2016 The Fisheries Society of the British Isles.

  17. The offshore fish community in southern Lake Ontario, 1972-1998

    Science.gov (United States)

    Owens, Randall W.; O'Gorman, Robert; Eckert, Thomas H.; Lantry, Brian F.; Munawar, M.

    2003-01-01

    The authors document the status of Lake Ontario's open-water fish community in 1972, near the beginning of an era of massive fish stocking and when phosphorus levels in the lake from anthropogenic inputs, were near their peak. They then describe changes that occurred in the fish community in 1978-98. This was a period when large numbers of young salmonid piscivores were released annually, sea lamprey control continued to improve, and phosphorus levels were declining due to successful nutrient abatement programs. Coincident with the above, the lower food web was changed by the addition of new exotic invertebrates, the zooplankter Bythotrephes cederstroemi and particularly the zebra mussel, Dreissena polymorpha, and quagga mussel, D. bugensis. The picture of the fish community structure is drawn from records of catches in bottom trawls and gill nets during surveys of southern Lake Ontario conducted the the U.S. Geological Survey (USGS) and the New York Department of Environmental Conservation (NYDEC), from records of fish stocked in Lake Ontario by the NYDEC, and from a creel census of boat anglers returning to southern Lake Ontario ports conducted by the NYDEC.

  18. A hierarchical community occurrence model for North Carolina stream fish

    Science.gov (United States)

    Midway, S.R.; Wagner, Tyler; Tracy, B.H.

    2016-01-01

    The southeastern USA is home to one of the richest—and most imperiled and threatened—freshwater fish assemblages in North America. For many of these rare and threatened species, conservation efforts are often limited by a lack of data. Drawing on a unique and extensive data set spanning over 20 years, we modeled occurrence probabilities of 126 stream fish species sampled throughout North Carolina, many of which occur more broadly in the southeastern USA. Specifically, we developed species-specific occurrence probabilities from hierarchical Bayesian multispecies models that were based on common land use and land cover covariates. We also used index of biotic integrity tolerance classifications as a second level in the model hierarchy; we identify this level as informative for our work, but it is flexible for future model applications. Based on the partial-pooling property of the models, we were able to generate occurrence probabilities for many imperiled and data-poor species in addition to highlighting a considerable amount of occurrence heterogeneity that supports species-specific investigations whenever possible. Our results provide critical species-level information on many threatened and imperiled species as well as information that may assist with re-evaluation of existing management strategies, such as the use of surrogate species. Finally, we highlight the use of a relatively simple hierarchical model that can easily be generalized for similar situations in which conventional models fail to provide reliable estimates for data-poor groups.

  19. Natural shorelines promote the stability of fish communities in an urbanized coastal system.

    Directory of Open Access Journals (Sweden)

    Steven B Scyphers

    Full Text Available Habitat loss and fragmentation are leading causes of species extinctions in terrestrial, aquatic and marine systems. Along coastlines, natural habitats support high biodiversity and valuable ecosystem services but are often replaced with engineered structures for coastal protection or erosion control. We coupled high-resolution shoreline condition data with an eleven-year time series of fish community structure to examine how coastal protection structures impact community stability. Our analyses revealed that the most stable fish communities were nearest natural shorelines. Structurally complex engineered shorelines appeared to promote greater stability than simpler alternatives as communities nearest vertical walls, which are among the most prevalent structures, were most dissimilar from natural shorelines and had the lowest stability. We conclude that conserving and restoring natural habitats is essential for promoting ecological stability. However, in scenarios when natural habitats are not viable, engineered landscapes designed to mimic the complexity of natural habitats may provide similar ecological functions.

  20. PiSCES: Pi(scine) stream community estimation software: A tool for nationwide fish assemblage predictions

    Science.gov (United States)

    Background/Question/Methods What species of fish might someone find in a local stream? How might that community change as a result of changes to characteristics of the stream and its watershed? PiSCES is a browser-based toolkit developed to predict a fish community for any NHD-Pl...

  1. Effects of fish community on occurrences of Yangtze finless porpoise in confluence of the Yangtze and Wanhe Rivers.

    Science.gov (United States)

    Zhang, Xiaoke; Yu, Daoping; Wang, Huili; Wan, An; Chen, Minmin; Tao, Feng; Song, Zunrong

    2015-06-01

    The Yangtze finless porpoise is a subspecies of narrow-ridged finless porpoise endemic to the middle and lower reaches of the Yangtze River and the adjoining Poyang and Dongting Lakes. With the depletion of fish stocks in the Yangtze River in recent decades, food availability has become the most important factor affecting the survival of this subspecies. Despite this, the relationships between fish community and occurrences of porpoise are far from being fully understood. Therefore, during September 2013 to August 2014, the occurrences of porpoise were investigated in confluence of the Yangtze and Wanhe Rivers; fish community was also surveyed synchronously in confluence and two adjacent transects. The results showed that (1) the confluence had maximum fish species richness, and the main dominant species was upper fish, while the other two transects were mainly dominated by demersal fish. ANOVA analyses showed that individual number and yield of upper fish which can be eaten by porpoise (upper edible fish) in the confluence were significantly higher than other two transects. (2) Average group size of the porpoise was 3.7 ± 1.8 individuals. The occurrences of porpoise in different seasons had great differences, and the porpoise was more likely to be detected in autumn and winter. (3) Fish community had significant effects on occurrences of porpoise, and the main influencing factors were fish species richness, individual number, and yield of edible fish, especially the upper edible fish. The results of this study will have important implications for the conservation of porpoise.

  2. Estuarine fish communities respond to climate variability over both river and ocean basins.

    Science.gov (United States)

    Feyrer, Frederick; Cloern, James E; Brown, Larry R; Fish, Maxfield A; Hieb, Kathryn A; Baxter, Randall D

    2015-10-01

    Estuaries are dynamic environments at the land-sea interface that are strongly affected by interannual climate variability. Ocean-atmosphere processes propagate into estuaries from the sea, and atmospheric processes over land propagate into estuaries from watersheds. We examined the effects of these two separate climate-driven processes on pelagic and demersal fish community structure along the salinity gradient in the San Francisco Estuary, California, USA. A 33-year data set (1980-2012) on pelagic and demersal fishes spanning the freshwater to marine regions of the estuary suggested the existence of five estuarine salinity fish guilds: limnetic (salinity = 0-1), oligohaline (salinity = 1-12), mesohaline (salinity = 6-19), polyhaline (salinity = 19-28), and euhaline (salinity = 29-32). Climatic effects propagating from the adjacent Pacific Ocean, indexed by the North Pacific Gyre Oscillation (NPGO), affected demersal and pelagic fish community structure in the euhaline and polyhaline guilds. Climatic effects propagating over land, indexed as freshwater outflow from the watershed (OUT), affected demersal and pelagic fish community structure in the oligohaline, mesohaline, polyhaline, and euhaline guilds. The effects of OUT propagated further down the estuary salinity gradient than the effects of NPGO that propagated up the estuary salinity gradient, exemplifying the role of variable freshwater outflow as an important driver of biotic communities in river-dominated estuaries. These results illustrate how unique sources of climate variability interact to drive biotic communities and, therefore, that climate change is likely to be an important driver in shaping the future trajectory of biotic communities in estuaries and other transitional habitats. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

  3. Mathematics Funds of Knowledge: "Sotmaute" and "Sermaute" Fish in a Torres Strait Islander Community

    Science.gov (United States)

    Ewing, Bronwyn

    2012-01-01

    The purpose of this article is to describe a project with one Torres Strait Islander Community. It provides some insights into parents' funds of knowledge that are mathematical in nature, such as sorting shells and giving fish. The idea of funds of knowledge is based on the premise that people are competent and have knowledge that has been…

  4. Determinants of Selenium Intake in a High HIV Prevalence Fishing Community in Bondo District, Kenya

    OpenAIRE

    Samwel Boaz Otieno; Fred Were; Ephantus Kabiru; Kaunda Waza

    2016-01-01

    A study was done to establish determinants of selenium intake in a high HIV prevalence fishing community in the Pala Bondo district, Kenya. It was established that most of the respondents (61%) were small holder Farmers and Fishermen {χ2 (1, N=386) p

  5. Effects of fishing on a temperate reef community in South Africa 2 ...

    African Journals Online (AJOL)

    Crinoidea, the principal food source of roman Chrysoblephus laticeps, was scarce at protected sites where this species was most abundant. Low algal abundance at protected sites was negatively correlated with grazer abundance within the fish communities encountered there, suggesting a high potential for coexistence of ...

  6. The fish community of East Cape tidal pools and an assessment of ...

    African Journals Online (AJOL)

    Fish occurring in tidal pools in the lower balanoid zone near Port Elizabeth were examined by visual census and rotenone collections. Numerically, Clinidae constituted 28% of the community, Sparidae 23%, Gobiidae 17% and the Cheilodactylidae 12%, while eleven other families contributed to the remaining 20%. The 44 ...

  7. From traits to life-history strategies: Deconstructing fish community composition across European seas

    DEFF Research Database (Denmark)

    Pécuchet, Lauréne; Lindegren, Martin; Hidalgo, Manuel

    2017-01-01

    The life history of a species is determined by trade-offs between growth, survival and reproduction to maximize fitness in a given environment. Following a theoretical model, we investigate whether the composition of marine fish communities can be understood in terms of a set of lifehistory...

  8. The subtidal gully fish community of the eastern Cape and the role of ...

    African Journals Online (AJOL)

    1988-02-25

    Feb 25, 1988 ... The subtidal gully fish community of the eastern Cape and the ... relation to previous studies of intertidal pools in the eastern and western Cape, ... transient species, particularly two species in the family ..... schooling species (27%) made up the balance. ..... consistent with other work that has shown greater.

  9. The theoretical foundations for size spectrum models of fish communities

    DEFF Research Database (Denmark)

    Andersen, Ken Haste; Jacobsen, Nis Sand; Farnsworth, K.D.

    2016-01-01

    Size spectrum models have emerged from 40 years of basic research on how body size determines individual physiology and structures marine communities. They are based on commonly accepted assumptions and have a low parameter set, which make them easy to deploy for strategic ecosystem oriented impact...... assessment of fisheries. We describe the fundamental concepts in size-based models about food encounter and the bioenergetics budget of individuals. Within the general framework three model types have emerged that differs in their degree of complexity: the food-web, the trait-based and the community model...

  10. Fish community response to increased river flow in the Kariega ...

    African Journals Online (AJOL)

    In the absence of freshwater inflow, the ichthyofaunal community in the littoral zone was numerically dominated by estuarine resident species, whilst after the freshwater pulse an increased contribution of marine migrant species was observed. Within the demersal zone, marine straggler species dominated during the dry ...

  11. A synthesis of ecological and fish-community changes in Lake Ontario, 1970-2000

    Science.gov (United States)

    Mills, E.L.; Casselman, J.M.; Dermott, R.; Fitzsimons, J.D.; Gal, G.; Holeck, K. T.; Hoyle, J.A.; Johannsson, O.E.; Lantry, B.F.; Makarewicz, J.C.; Millard, E.S.; Munawar, I.F.; Munawar, M.; O'Gorman, R.; Owens, R.W.; Rudstam, L. G.; Schaner, T.; Stewart, T.J.

    2005-01-01

    We assessed stressors associated with ecological and fishcommunity changes in Lake Ontario since 1970, when the first symposium on Salmonid Communities in Oligotrophic Lakes (SCOL I) was held (J. Fish. Res. Board Can. 29: 613-616). Phosphorus controls implemented in the early 1970s were undeniably successful; lower food-web studies showed declines in algal abundance and epilimnetic zooplankton production and a shift in pelagic primary productivity toward smaller organisms. Stressors on the fish community prior to 1970 such as exploitation, sea lamprey (Petromyzon marinus) predation, and effects of nuisance populations of alewife (Alosa pseudoharengus) were largely ameliorated by the 1990s. The alewife became a pivotal species supporting a multi-million-dollar salmonid sport fishery, but alewife-induced thiamine deficiency continued to hamper restoration and sustainability of native lake trout (Salvelinus namaycush). Expanding salmonine populations dependent on alewife raised concerns about predator demand and prey supply, leading to reductions in salmonine stocking in the early 1990s. Relaxation of the predation impact by alewives and their shift to deeper water allowed recovery of native fishes such as threespine stickleback (Gasterosteus aculeatus) and emerald shiner (Notropis atherinoides). The return of the Lake Ontario ecosystem to historical conditions has been impeded by unplanned introductions. Establishment of Dreissena spp. led to increased water clarity and increased vectoring of lower trophic-level production to benthic habitats and contributed to the collapse of Diporeia spp. populations, behavioral modifications of key fish species, and the decline of native lake whitefish (Coregonus clupeaformis). Despite reduced productivity, exotic-species introductions, and changes in the fish community, offshore Mysis relicta populations remained relatively stable. The effects of climate and climate change on the population abundance and dynamics of Lake Ontario

  12. An approach of community evolution based on gravitational relationship refactoring in dynamic networks

    International Nuclear Information System (INIS)

    Yin, Guisheng; Chi, Kuo; Dong, Yuxin; Dong, Hongbin

    2017-01-01

    In this paper, an approach of community evolution based on gravitational relationship refactoring between the nodes in a dynamic network is proposed, and it can be used to simulate the process of community evolution. A static community detection algorithm and a dynamic community evolution algorithm are included in the approach. At first, communities are initialized by constructing the core nodes chains, the nodes can be iteratively searched and divided into corresponding communities via the static community detection algorithm. For a dynamic network, an evolutionary process is divided into three phases, and behaviors of community evolution can be judged according to the changing situation of the core nodes chain in each community. Experiments show that the proposed approach can achieve accuracy and availability in the synthetic and real world networks. - Highlights: • The proposed approach considers both the static community detection and dynamic community evolution. • The approach of community evolution can identify the whole 6 common evolution events. • The proposed approach can judge the evolutionary events according to the variations of the core nodes chains.

  13. Tropical fish community does not recover 45 years after predator introduction.

    Science.gov (United States)

    Sharpe, D M T; De León, L F; González, R; Torchin, M E

    2017-02-01

    Predation is considered to be an important factor structuring natural communities. However, it is often difficult to determine how it may influence long-term, broad-scale, diversity patterns, particularly in diverse tropical systems. Biological introductions can provide powerful insight to test the sustained consequences of predation in natural communities, if pre-introduction data are available. Half a century ago, Zaret and Paine demonstrated strong and immediate community-level effects following the introduction of a novel apex predator (peacock bass, Cichla monoculus) into Lake Gatun, Panama. To test for long-term changes associated with this predator introduction, we followed up on their classic study by replicating historical sampling methods and examining changes in the littoral fish community at two sites in Lake Gatun 45 years post-introduction. To broaden our inference, we complemented this temporal comparison with a spatial analysis, wherein we compared the fish communities from two lakes with and one lake without peacock bass. Comparisons with historical data revealed that the peacock bass remains the most abundant predator in Lake Gatun. Furthermore, the collapse of the littoral prey community observed immediately following the invasion has been sustained over the past 45 years. The mean abundance of native littoral fish is now 96% lower than it was prior to the introduction. Diversity (rarefied species richness) declined by 64% post-introduction, and some native species appear to have been locally extirpated. We observed a similar pattern across invaded and uninvaded lakes: the mean abundance of native fishes was 5-40 times lower in lakes with (Gatun, Alajuela) relative to the lake without peacock bass (Bayano). In particular, small-bodied native fishes (Characidae, Peociliidae), which are common prey of the peacock bass, were more than two orders of magnitude (307 times) less abundant in Gatun and one order of magnitude (28 times) less abundant in

  14. Diet compositions and trophic guild structure of the eastern Chukchi Sea demersal fish community

    Science.gov (United States)

    Whitehouse, George A.; Buckley, Troy W.; Danielson, Seth L.

    2017-01-01

    Fishes are an important link in Arctic marine food webs, connecting production of lower trophic levels to apex predators. We analyzed 1773 stomach samples from 39 fish species collected during a bottom trawl survey of the eastern Chukchi Sea in the summer of 2012. We used hierarchical cluster analysis of diet dissimilarities on 21 of the most well sampled species to identify four distinct trophic guilds: gammarid amphipod consumers, benthic invertebrate generalists, fish and shrimp consumers, and zooplankton consumers. The trophic guilds reflect dominant prey types in predator diets. We used constrained analysis of principal coordinates (CAP) to determine if variation within the composite guild diets could be explained by a suite of non-diet variables. All CAP models explained a significant proportion of the variance in the diet matrices, ranging from 7% to 25% of the total variation. Explanatory variables tested included latitude, longitude, predator length, depth, and water mass. These results indicate a trophic guild structure is present amongst the demersal fish community during summer in the eastern Chukchi Sea. Regular monitoring of the food habits of the demersal fish community will be required to improve our understanding of the spatial, temporal, and interannual variation in diet composition, and to improve our ability to identify and predict the impacts of climate change and commercial development on the structure and functioning of the Chukchi Sea ecosystem.

  15. Evolution of sperm quality but not quantity in the internally fertilized fish Xiphophorus nigrensis.

    Science.gov (United States)

    Smith, C C; Ryan, M J

    2010-08-01

    Species with alternative reproductive strategies are characterized by discrete differences among males in suites of traits related to competition for fertilizations. Models predict sneaker males should allocate more resources to their ejaculates because they experience sperm competition more frequently and often occupy a disfavoured 'role' owing to subordinance in intramale competition and female preferences for larger males. We examined whether sperm number and quality differed between male strategies in the internally fertilized fish Xiphophorus nigrensis and explored the relationship between sperm morphology and performance. We found sneaker males had similar testes sizes compared to courting males but ejaculates with both more viable and longer lived sperm. Sneaker sperm also had longer midpieces, which was positively correlated with both velocity and longevity. Our study suggests that the evolution of sperm quantity and quality can be decoupled and that the sperm morphology is likely to play an important role in mediating sperm competition through its effects on sperm performance.

  16. Methylmercury exposure in a subsistence fishing community in Lake Chapala, Mexico: an ecological approach

    Directory of Open Access Journals (Sweden)

    Abercrombie Mary I

    2010-01-01

    Full Text Available Abstract Background Elevated concentrations of mercury have been documented in fish in Lake Chapala in central Mexico, an area that is home to a large subsistence fishing community. However, neither the extent of human mercury exposure nor its sources and routes have been elucidated. Methods Total mercury concentrations were measured in samples of fish from Lake Chapala; in sections of sediment cores from the delta of Rio Lerma, the major tributary to the lake; and in a series of suspended-particle samples collected at sites from the mouth of the Lerma to mid-Lake. A cross-sectional survey of 92 women ranging in age from 18-45 years was conducted in three communities along the Lake to investigate the relationship between fish consumption and hair mercury concentrations among women of child-bearing age. Results Highest concentrations of mercury in fish samples were found in carp (mean 0.87 ppm. Sediment data suggest a pattern of moderate ongoing contamination. Analyses of particles filtered from the water column showed highest concentrations of mercury near the mouth of the Lerma. In the human study, 27.2% of women had >1 ppm hair mercury. On multivariable analysis, carp consumption and consumption of fish purchased or captured from Lake Chapala were both associated with significantly higher mean hair mercury concentrations. Conclusions Our preliminary data indicate that, despite a moderate level of contamination in recent sediments and suspended particulate matter, carp in Lake Chapala contain mercury concentrations of concern for local fish consumers. Consumption of carp appears to contribute significantly to body burden in this population. Further studies of the consequences of prenatal exposure for child neurodevelopment are being initiated.

  17. Aquatic insects as the main food resource of fish the community in a Neotropical reservoir

    Directory of Open Access Journals (Sweden)

    Ana Paula Vidotto-Magnoni

    Full Text Available We evaluated the feeding of fish species of the Nova Avanhandava Reservoir, low Tietê River, São Paulo State, Brazil. Fishes were collected in two stretches of the reservoir: Santa Bárbara (14 samples and Bonito (two samples between September 2002 and March 2004, using gill and seining nets. The results of stomach contents analysis were expressed with the frequency of occurrence and gravimetric method, combined in the Alimentary Index (AI. The 20 species studied consumed 52 food items, grouped in 10 food categories: aquatic insects, terrestrial insects, crustaceans, fish, macroinvertebrates, microcrustaceans, algae, vegetal matter, detritus/sediment and scales. The aquatic insects (mainly Chironomidae, Odonata and Ephemeroptera were the most common food resources, consumed by 18 species. The diet composition of the community (species grouped indicated that the dominant food category in the diet of fishes was aquatic insects (AI = 77.6%, followed by crustaceans (AI = 7.1%. Four trophic guilds were identified according a cluster analysis (Pearson distance: insectivorous (10 species, omnivorous (4 species, detritivorous (3 species and piscivorous/carcinophagous (3 species. Despite the highest number of species, the insectivorous guild was responsible for more than 80% in captures in number and biomass (CPUEn and CPUEb. The low values of niche breadth presented by all species, along with the low values of diet overlap between species pairs indicate a high degree of food resources partitioning among species. The aquatic insects, despite being the main food resource of insectivorous fishes, also complemented the diet of other species, which demonstrate the importance of this food resource for the fish community, sustaining a high diversity, abundance and biomass of fishes.

  18. Reef fish community in presence of the lionfish (Pterois volitans in Santa Marta, Colombian Caribbean

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    Rocío García-Urueña

    2015-11-01

    Full Text Available Objective. Fish species community structure and benthic organisms coverage were studied in five localities in Santa Marta where the lionfish is present. Materials and methods. Abundance of fish species, including lion fish, was established using 30 m random visual censuses and video transects; trophic guilds were established according to available references. On the other hand benthic coverage was evaluated using the software Coral Point Count (CPCe 4.0. Results. Families with higher species numbers were Serranidae, Labridae, and Pomacentridae. Lionfish abundances were low (2.6±2.1 ind/120 m2, but in any case Pterois volitans was observed as the eleventh more abundant species, surpassing species of commercial value such as Cephalopholis cruentata. Species that were found in larger numbers (>100, Thalassoma bifasciatum, Haemulon aurolineatum, Canthigaster rostrata, Abudefduf saxatilis, Chromis cyanea, and Stegastes partitus were mainly invertebrate eaters, planctivores, and territorial herbivores. Coral coverage showed higher coral percentages in Chengue (69.9% and Cinto (27.4%, larger sponge percentages in Morro (32.7%; Isla Aguja and Remanso showed the larger figures for abiotic substrate (41.6 and 37%, respectively; corals, sponges, and gorgonians were the components best explaining fish community, but not for the lion fish, which inhabit all studied reef formations. Conclusions. Lion fish is ranked between the 20 more abundant species, with none commercially important species larger, hence no species may qualify as a natural control. Lion fish has as well become a relatively abundant species in Santa Marta reefs, independent of benthic coverage.

  19. Patterns and drivers of fish community assembly in a large marine ecosystem

    DEFF Research Database (Denmark)

    Pécuchet, Lauréne; Törnroos, Anna; Lindegren, Martin

    2016-01-01

    . To determine assembly rules, ecological similarities of co-occurring species are often investigated. This can be evaluated using trait-based indices summarizing the species’ niches in a given community. In order to investigate the underlying processes shaping community assembly in marine ecosystems, we...... investigated the patterns and drivers of fish community composition in the Baltic Sea, a semi-enclosed sea characterized by a pronounced environmental gradient. Our results showed a marked decline in species- and functional richness, largely explained by decreasing salinities. In addition, habitat complexity...

  20. Environmental factors predicting fish community structure in two neotropical rivers in Brazil

    Directory of Open Access Journals (Sweden)

    Yzel Rondon Súarez

    Full Text Available In order to assess the organization patterns of the fish communities in the Jogui and Iguatemi rivers, we collected fish with gill nets tri-monthly from November 1999 to August 2000. Hypostomus ancistroides and Parauchenipterus galeatus were the most abundant species in the Jogui and Iguatemi rivers, respectively. Longitudinal variation was more important than seasonal in determining the species composition in both rivers, and the difference between seasons was not statistically significant. Altitude was the most important factor determining species distribution.

  1. Low Functional β-Diversity Despite High Taxonomic β-Diversity among Tropical Estuarine Fish Communities

    Science.gov (United States)

    Villéger, Sébastien; Miranda, Julia Ramos; Hernandez, Domingo Flores; Mouillot, David

    2012-01-01

    The concept of β-diversity, defined as dissimilarity among communities, has been widely used to investigate biodiversity patterns and community assembly rules. However, in ecosystems with high taxonomic β-diversity, due to marked environmental gradients, the level of functional β-diversity among communities is largely overlooked while it may reveal processes shaping community structure. Here, decomposing biodiversity indices into α (local) and γ (regional) components, we estimated taxonomic and functional β-diversity among tropical estuarine fish communities, through space and time. We found extremely low functional β-diversity values among fish communities (diversities, α and γ functional diversities were very close to the minimal value. These patterns were caused by two dominant functional groups which maintained a similar functional structure over space and time, despite the strong dissimilarity in taxonomic structure along environmental gradients. Our findings suggest that taxonomic and functional β-diversity deserve to be quantified simultaneously since these two facets can show contrasting patterns and the differences can in turn shed light on community assembly rules. PMID:22792395

  2. Characterization of water quality and biological communities, Fish Creek, Teton County, Wyoming, 2007-2011

    Science.gov (United States)

    Eddy-Miller, Cheryl A.; Peterson, David A.; Wheeler, Jerrod D.; Edmiston, C. Scott; Taylor, Michelle L.; Leemon, Daniel J.

    2013-01-01

    Fish Creek, an approximately 25-kilometer-long tributary to Snake River, is located in Teton County in western Wyoming near the town of Wilson. Fish Creek is an important water body because it is used for irrigation, fishing, and recreation and adds scenic value to the Jackson Hole properties it runs through. Public concern about nuisance growths of aquatic plants in Fish Creek has been increasing since the early 2000s. To address these concerns, the U.S. Geological Survey conducted a study in cooperation with the Teton Conservation District to characterize the hydrology, water quality, and biologic communities of Fish Creek during 2007–11. The hydrology of Fish Creek is strongly affected by groundwater contributions from the area known as the Snake River west bank, which lies east of Fish Creek and west of Snake River. Because of this continuous groundwater discharge to the creek, land-use activities in the west bank area can affect the groundwater quality. Evaluation of nitrate isotopes and dissolved-nitrate concentrations in groundwater during the study indicated that nitrate was entering Fish Creek from groundwater, and that the source of nitrate was commonly a septic/sewage effluent or manure source, or multiple sources, potentially including artificial nitrogen fertilizers, natural soil organic matter, and mixtures of sources. Concentrations of dissolved nitrate and orthophosphate, which are key nutrients for growth of aquatic plants, generally were low in Fish Creek and occasionally were less than reporting levels (not detected). One potential reason for the low nutrient concentrations is that nutrients were being consumed by aquatic plant life that increases during the summer growing season, as a result of the seasonal increase in temperature and larger number of daylight hours. Several aspects of Fish Creek’s hydrology contribute to higher productivity and biovolume of aquatic plants in Fish Creek than typically observed in streams of its size in

  3. A sensory bias has triggered the evolution of egg-spots in cichlid fishes.

    Directory of Open Access Journals (Sweden)

    Bernd Egger

    Full Text Available Although, generally, the origin of sex-limited traits remains elusive, the sensory exploitation hypothesis provides an explanation for the evolution of male sexual signals. Anal fin egg-spots are such a male sexual signal and a key characteristic of the most species-rich group of cichlid fishes, the haplochromines. Males of about 1500 mouth-brooding species utilize these conspicuous egg-dummies during courtship--apparently to attract females and to maximize fertilization success. Here we test the hypothesis that the evolution of haplochromine egg-spots was triggered by a pre-existing bias for eggs or egg-like coloration. To this end, we performed mate-choice experiments in the basal haplochromine Pseudocrenilabrus multicolor, which manifests the plesiomorphic character-state of an egg-spot-less anal fin. Experiments using computer-animated photographs of males indeed revealed that females prefer images of males with virtual ('in-silico' egg-spots over images showing unaltered males. In addition, we tested for color preferences (outside a mating context in a phylogenetically representative set of East African cichlids. We uncovered a strong preference for yellow, orange or reddish spots in all haplochromines tested and, importantly, also in most other species representing more basal lines. This pre-existing female sensory bias points towards high-quality (carotenoids-enriched food suggesting that it is adaptive.

  4. Sex-specific evolution during the diversification of live-bearing fishes.

    Science.gov (United States)

    Culumber, Zachary W; Tobler, Michael

    2017-08-01

    Natural selection is often assumed to drive parallel functional diversification of the sexes. But males and females exhibit fundamental differences in their biology, and it remains largely unknown how sex differences affect macroevolutionary patterns. On microevolutionary scales, we understand how natural and sexual selection interact to give rise to sex-specific evolution during phenotypic diversification and speciation. Here we show that ignoring sex-specific patterns of functional trait evolution misrepresents the macroevolutionary adaptive landscape and evolutionary rates for 112 species of live-bearing fishes (Poeciliidae). Males and females of the same species evolve in different adaptive landscapes. Major axes of female morphology were correlated with environmental variables but not reproductive investment, while male morphological variation was primarily associated with sexual selection. Despite the importance of both natural and sexual selection in shaping sex-specific phenotypic diversification, species diversification was overwhelmingly associated with ecological divergence. Hence, the inter-predictability of mechanisms of phenotypic and species diversification may be limited in many systems. These results underscore the importance of explicitly addressing sex-specific diversification in empirical and theoretical frameworks of evolutionary radiations to elucidate the roles of different sources of selection and constraint.

  5. Intrasexual competition facilitates the evolution of alternative mating strategies in a colour polymorphic fish.

    Science.gov (United States)

    Hurtado-Gonzales, Jorge L; Uy, J Albert C

    2010-12-23

    Intense competition for access to females can lead to males exploiting different components of sexual selection, and result in the evolution of alternative mating strategies (AMSs). Males of Poecilia parae, a colour polymorphic fish, exhibit five distinct phenotypes: drab-coloured (immaculata), striped (parae), structural-coloured (blue) and carotenoid-based red and yellow morphs. Previous work indicates that immaculata males employ a sneaker strategy, whereas the red and yellow morphs exploit female preferences for carotenoid-based colours. Mating strategies favouring the maintenance of the other morphs remain to be determined. Here, we report the role of agonistic male-male interactions in influencing female mating preferences and male mating success, and in facilitating the evolution of AMSs. Our study reveals variation in aggressiveness among P. parae morphs during indirect and direct interactions with sexually receptive females. Two morphs, parae and yellow, use aggression to enhance their mating success (i.e., number of copulations) by 1) directly monopolizing access to females, and 2) modifying female preferences after winning agonistic encounters. Conversely, we found that the success of the drab-coloured immaculata morph, which specializes in a sneak copulation strategy, relies in its ability to circumvent both male aggression and female choice when facing all but yellow males. Strong directional selection is expected to deplete genetic variation, yet many species show striking genetically-based polymorphisms. Most studies evoke frequency dependent selection to explain the persistence of such variation. Consistent with a growing body of evidence, our findings suggest that a complex form of balancing selection may alternatively explain the evolution and maintenance of AMSs in a colour polymorphic fish. In particular, this study demonstrates that intrasexual competition results in phenotypically distinct males exhibiting clear differences in their levels of

  6. Intrasexual competition facilitates the evolution of alternative mating strategies in a colour polymorphic fish

    Directory of Open Access Journals (Sweden)

    Uy J Albert C

    2010-12-01

    Full Text Available Abstract Background Intense competition for access to females can lead to males exploiting different components of sexual selection, and result in the evolution of alternative mating strategies (AMSs. Males of Poecilia parae, a colour polymorphic fish, exhibit five distinct phenotypes: drab-coloured (immaculata, striped (parae, structural-coloured (blue and carotenoid-based red and yellow morphs. Previous work indicates that immaculata males employ a sneaker strategy, whereas the red and yellow morphs exploit female preferences for carotenoid-based colours. Mating strategies favouring the maintenance of the other morphs remain to be determined. Here, we report the role of agonistic male-male interactions in influencing female mating preferences and male mating success, and in facilitating the evolution of AMSs. Results Our study reveals variation in aggressiveness among P. parae morphs during indirect and direct interactions with sexually receptive females. Two morphs, parae and yellow, use aggression to enhance their mating success (i.e., number of copulations by 1 directly monopolizing access to females, and 2 modifying female preferences after winning agonistic encounters. Conversely, we found that the success of the drab-coloured immaculata morph, which specializes in a sneak copulation strategy, relies in its ability to circumvent both male aggression and female choice when facing all but yellow males. Conclusions Strong directional selection is expected to deplete genetic variation, yet many species show striking genetically-based polymorphisms. Most studies evoke frequency dependent selection to explain the persistence of such variation. Consistent with a growing body of evidence, our findings suggest that a complex form of balancing selection may alternatively explain the evolution and maintenance of AMSs in a colour polymorphic fish. In particular, this study demonstrates that intrasexual competition results in phenotypically distinct

  7. Environmental monitoring of the La Grande complex (2003-2004) : evolution of mercury levels in the flesh of fish

    International Nuclear Information System (INIS)

    Therrien, J.; Schetagne, R.

    2005-11-01

    The results of surveys conducted to assess the duration of temporary mercury levels in piscivorous species in the La Grande Complex were presented. A 2003 survey conducted in the easter sector and a 2004 survey conducted in the western sector of the complex showed that for non-piscivorous fishes of standardized length, a return to mean natural mercury levels will be achieved between 10 and 20 years after impounding. For piscivorous fishes, the evolution pattern of the mean mercury levels suggested that a return to background levels will occur after 20 to 30 years. Mercury levels for northern pike in the Robert-Bourassa Reservoir are expected to return to normal levels after 30 to 35 years. The surveys indicated that mean mercury levels in non-piscivorous fishes were often higher immediately below the La Grande generating stations. Similar observations were made for northern pike and lake trout downstream of the generating stations in the eastern sector of the complex. Mean mercury levels were significantly higher for fishes in the complex than fishes in the natural lakes of the region. Results of the surveys suggested that additional consumption restrictions for piscivorous fishes in the reservoirs are needed. Consumption guidelines for varieties of non-piscivorous and piscivorous fishes from the complex were included

  8. Fluctuating interaction network and time-varying stability of a natural fish community

    Science.gov (United States)

    Ushio, Masayuki; Hsieh, Chih-Hao; Masuda, Reiji; Deyle, Ethan R.; Ye, Hao; Chang, Chun-Wei; Sugihara, George; Kondoh, Michio

    2018-02-01

    Ecological theory suggests that large-scale patterns such as community stability can be influenced by changes in interspecific interactions that arise from the behavioural and/or physiological responses of individual species varying over time. Although this theory has experimental support, evidence from natural ecosystems is lacking owing to the challenges of tracking rapid changes in interspecific interactions (known to occur on timescales much shorter than a generation time) and then identifying the effect of such changes on large-scale community dynamics. Here, using tools for analysing nonlinear time series and a 12-year-long dataset of fortnightly collected observations on a natural marine fish community in Maizuru Bay, Japan, we show that short-term changes in interaction networks influence overall community dynamics. Among the 15 dominant species, we identify 14 interspecific interactions to construct a dynamic interaction network. We show that the strengths, and even types, of interactions change with time; we also develop a time-varying stability measure based on local Lyapunov stability for attractor dynamics in non-equilibrium nonlinear systems. We use this dynamic stability measure to examine the link between the time-varying interaction network and community stability. We find seasonal patterns in dynamic stability for this fish community that broadly support expectations of current ecological theory. Specifically, the dominance of weak interactions and higher species diversity during summer months are associated with higher dynamic stability and smaller population fluctuations. We suggest that interspecific interactions, community network structure and community stability are dynamic properties, and that linking fluctuating interaction networks to community-level dynamic properties is key to understanding the maintenance of ecological communities in nature.

  9. Fish community responses to submerged aquatic vegetation in Maumee Bay, Western Lake Erie

    Science.gov (United States)

    Miller, Jacob; Kocovsky, Patrick; Wiegmann, Daniel; Miner, Jeffery G.

    2018-01-01

    Submerged aquatic vegetation (SAV) in clearwater systems simultaneously provides habitat for invertebrate prey and acts as refugia for small fishes. Many fishes in Lake Erie rely on shallow, heavily vegetated bays as spawning grounds and the loss or absence of which is known to reduce recruitment in other systems. The Maumee River and Maumee Bay, which once had abundant macrophyte beds, have experienced a decline of SAV and an increase in suspended solids (turbidity) over the last century due to numerous causes. To compare fish communities in open‐water (turbid) and in SAV (clearer water) habitats in this region, which is designated by the U.S. Environmental Protection Agency as an Area of Concern, and to indicate community changes that could occur with expansion of SAV habitat, we sampled a 300‐ha sector of northern Maumee Bay that contained both habitats. Using towed neuston nets through patches of each habitat, we determined that areas of SAV contained more species and a different species complex (based on the Jaccard index and the wetland fish index), than did the open‐water habitat (averaging 8.6 versus 5 species per net trawl). The SAV habitat was dominated by centrarchids, namely Largemouth Bass Micropterus salmoides, Bluegill Lepomis macrochirus, and Black Crappie Pomoxis nigromaculatus. Open‐water habitat was dominated by Spottail Shiner Notropis hudsonius, Gizzard Shad Dorosoma cepedianum, and White Perch Morone americana, an invasive species. These results indicate that restoration efforts aimed at decreasing turbidity and increasing the distribution of SAV could cause substantive shifts in the fish community and address important metrics for assessing the beneficial use impairments in this Area of Concern.

  10. Patchiness in a large floodplain river: Associations among hydrology, nutrients, and fish communities

    Science.gov (United States)

    DeJager, Nathan R.; Houser, Jeff N.

    2016-01-01

    Large floodplain rivers have internal structures shaped by directions and rates of water movement. In a previous study, we showed that spatial variation in local current velocities and degrees of hydrological exchange creates a patch-work mosaic of nitrogen and phosphorus concentrations and ratios in the Upper Mississippi River. Here, we used long-term fish and limnological data sets to test the hypothesis that fish communities differ between the previously identified patches defined by high or low nitrogen to phosphorus ratios (TN:TP) and to determine the extent to which select limnological covariates might explain those differences. Species considered as habitat generalists were common in both patch types but were at least 2 times as abundant in low TN:TP patches. Dominance by these species resulted in lower diversity in low TN:TP patches, whereas an increased relative abundance of a number of rheophilic (flow-dependent) species resulted in higher diversity and a more even species distribution in high TN:TP patches. Of the limnological variables considered, the strongest predictor of fish species assemblage and diversity was water flow velocity, indicating that spatial patterns in water-mediated connectivity may act as the main driver of both local nutrient concentrations and fish community composition in these reaches. The coupling among hydrology, biogeochemistry, and biodiversity in these river reaches suggests that landscape-scale restoration projects that manipulate hydrogeomorphic patterns may also modify the spatial mosaic of nutrients and fish communities. Published 2016. This article is a U.S. Government work and is in the public domain in the USA.

  11. Adirondack lakes survey: An interpretive analysis of fish communities and water chemistry, 1984--1987

    Energy Technology Data Exchange (ETDEWEB)

    Baker, J.P. (Baker (Joan P.), Raleigh, NC (USA)); Gherini, S.A.; Munson, R.K. (Tetra Tech, Inc., Pasadena, CA (USA)); Christensen, S.W. (Oak Ridge National Lab., TN (USA)); Driscoll, C.T. (Syracuse Univ., NY (USA)); Gallagher, J. (Adirondack Lakes Survey Corp., Ray Brook, NY (USA)); Newton, R.M. (Smith Coll., Northampton, MA (USA)); Reckhow, K.H. (Duke Univ., Durham, NC (USA)); Schofield, C.L. (Co

    1990-01-01

    The Adirondack Lakes Survey Corporation (ALSC) was formed as a cooperative effort of the New York State Department of Environmental Conservation and the Empire State Electric Energy Research Corporation to better characterize the chemical and biological status of Adirondack lakes. Between 1984 and 1987, the ALSC surveyed 1469 lakes within the Adirondack ecological zone. As a follow-up to the survey, the ALSC sponsored a series of interpretive analyses of the ALSC data base. The primary objectives of these analyses were as follows: Evaluate the influence of mineral acids (from acidic deposition) and nonmineral acids (natural organic acids) on lake pH levels; classify Adirondack lakes according to lake and watershed features expected to influence their responsiveness to changes in acidic deposition; evaluate the sensitivity of Adirondack lakes to changes in environmental conditions, such as changes in mineral acids or dissolved organic carbon concentrations; identify lake characteristics important in explaining the observed present-day status of fish communities in Adirondack lakes, in particular the relative importance of lake acidity; evaluate changes that have occurred over time in Adirondack fish communities and probable causes for these trends by using the available historical data on fish communities in the Adirondacks and the ALSC data base; and determine the degree to which the existing fish resource might be at risk from continued acidic deposition, or might recover if acidity levels were reduced. The basic approach examined relationships observed in the ALSC data base among watershed characteristics, lake chemistry, and fish status. Individual reports are processed separately for the data bases.

  12. Composition and temporal patterns of larval fish communities in Chesapeake and Delaware Bays

    Directory of Open Access Journals (Sweden)

    Filipe Ribeiro

    2015-11-01

    Full Text Available Comparing larval fish assemblages in different estuaries provides insights about the coastal distribution of larval populations, larval transport, and adult spawning locations (Ribeiro et al. 2015. We simultaneously compared the larval fish assemblages entering two Middle Atlantic Bight (MAB estuaries (Delaware Bay and Chesapeake Bay, USA through weekly sampling from 2007 to 2009. In total, 43 taxa (32 families and 36 taxa (24 families were collected in Delaware and Chesapeake Bays, respectively. Mean taxonomic diversity, mean richness, and evenness were generally lower in Delaware Bay. Communities of both bays were dominated by Anchoa spp., Gobiosoma spp., Micropogonias undulatus, and Brevoortia tyrannus; Paralichthys spp. was more abundant in Delaware Bay and Microgobius thalassinus was more abundant in Chesapeake Bay. Inter-annual variation in the larval fish communities was low at both sites, with a relatively consistent composition across years, but strong seasonal (intra-annual variation in species composition occurred in both bays. Two groups were identified in Chesapeake Bay: a ‘winter’ group dominated by shelf-spawned species (e.g. M. undulatus and a ‘summer’ group comprising obligate estuarine species and coastal species (e.g. Gobiosoma spp. and Cynoscion regalis, respectively. In Delaware Bay, 4 groups were identified: a ‘summer’ group of mainly obligate estuarine fishes (e.g. Menidia sp. being replaced by a ‘fall’ group (e.g. Ctenogobius boleosoma and Gobionellus oceanicus; ‘winter’ and ‘spring’ groups were dominated by shelf-spawned (e.g. M. undulatus and Paralichthys spp. and obligate estuarine species (e.g. Leiostomus xanthurus and Pseudopleuronectes americanus, respectively. This study demonstrates that inexpensive and simultaneous sampling in different estuaries provides important insights into the variability in community structure of fish assemblages at large spatial scales.

  13. Evidence for serial discontinuity in the fish community of a heavily impounded river

    Science.gov (United States)

    Miranda, Leandro E.; Dembkowski, D.J.

    2016-01-01

    In the Tennessee River, USA, we examined lengthwise patterns in fish community structure and species richness within and among nine reservoirs organized in sequence and connected through navigational locks. Within reservoirs, the riverine, transition and lacustrine zones supported distinct, although overlapping, nearshore fish assemblages; differences were also reflected in measures of species richness. Spatial patterns were most apparent for rheophilic species, which increased in species richness and representation upstream within each reservoir and downstream across the chain of reservoirs. This pattern resembled a sawtooth wave, with the amplitude of the wave peaking in the riverine zone below each dam, and progressively higher wave amplitude developing downstream in the reservoir chain. The observed sawtooth pattern supports the serial discontinuity concept in that the continuity of the riverine fish community is interrupted by the lacustrine conditions created behind each dam. Upstream within each reservoir, and downstream in the chain of reservoirs, habitat characteristics become more riverine. To promote sustainability of rheophilic fishes and maintain biodiversity in impounded rivers, conservation plans could emphasize maintenance and preservation of riverine environments of the reservoir's upper reaches, while remaining cognizant of the broader basin trends that provide opportunities for a lengthwise array of conservation and management policy. 

  14. Ecological risk assessment in a large river-reservoir. 2: Fish community

    International Nuclear Information System (INIS)

    Suter, G.W. II; Barnthouse, L.W.; Efroymson, R.A.; Jager, H.

    1999-01-01

    This paper summarizes the assessment of risks to fishes in the Clinch River Operable Unit due to contaminants released by the US Department of Energy's activities on its Oak Ridge Reservation in Tennessee. This paper focuses on the most contaminated area, the Poplar Creek (PC) embayment. The assessment is of interest because of its use of five distinct lines of evidence: fish community surveys, fish body burdens, toxicity tests of ambient waters, suborganismal bioindicators, and single chemical toxicity tests. None of these lines of evidence provided unambiguous evidence of a significant risk, but the surveys indicated that the fish community in PC was depauperate, polychlorinated biphenyl body burdens may have been at toxic levels in catfish, one of the three tests of ambient water showed clear toxicity, some of the indicators were indicative of toxic effects, and concentrations that have been toxic in the laboratory were detected periodically. Interpretation was further complicated by upstream contamination of both the Clinch River and PC. The risk characterization was performed by evaluating each line of evidence separately and then weighing the evidence using an ecoepidemiological approach

  15. Warming shelf seas drive the subtropicalization of European pelagic fish communities.

    Science.gov (United States)

    Montero-Serra, Ignasi; Edwards, Martin; Genner, Martin J

    2015-01-01

    Pelagic fishes are among the most ecologically and economically important fish species in European seas. In principle, these pelagic fishes have potential to demonstrate rapid abundance and distribution shifts in response to climatic variability due to their high adult motility, planktonic larval stages, and low dependence on benthic habitat for food or shelter during their life histories. Here, we provide evidence of substantial climate-driven changes to the structure of pelagic fish communities in European shelf seas. We investigated the patterns of species-level change using catch records from 57,870 fisheries-independent survey trawls from across European continental shelf region between 1965 and 2012. We analysed changes in the distribution and rate of occurrence of the six most common species, and observed a strong subtropicalization of the North Sea and Baltic Sea assemblages. These areas have shifted away from cold-water assemblages typically characterized by Atlantic herring and European sprat from the 1960s to 1980s, to warmer-water assemblages including Atlantic mackerel, Atlantic horse mackerel, European pilchard and European anchovy from the 1990s onwards. We next investigated if warming sea temperatures have forced these changes using temporally comprehensive data from the North Sea region. Our models indicated the primary driver of change in these species has been sea surface temperatures in all cases. Together, these analyses highlight how individual species responses have combined to result in a dramatic subtropicalization of the pelagic fish assemblage of the European continental shelf. © 2014 John Wiley & Sons Ltd.

  16. Breaking the Bounds of Rationality: Values, Relationships, and Decision-making in Mexican Fishing Communities

    Directory of Open Access Journals (Sweden)

    Nicole D Peterson

    2014-01-01

    Full Text Available In fishing communities in Baja California Sur, Mexico, fisheries management is heavily influenced by models of individual economic rationality held by biologists and others involved in management, in which fishermen ′choose′ to overfish because they are motivated by selfish individual rationality. Yet there is much that is neglected by these models, including the pressures of economic markets, family and community expectations, and cultural and personal value systems. Actual decisions about fishing and resource management rarely match the expectations of classical or neoliberal economic models of individual behaviour. I argue here that rational choice theory is a historically and culturally constructed discourse that becomes a taken-for-granted lens for viewing behaviour around the world. The effects of this discourse can be seen in the policies that are derived from them, as shown through this case study.

  17. Persistence and stability of fish community structure in a southwest New York stream

    Science.gov (United States)

    Hansen, Michael J.; Ramm, Carl W.

    1994-01-01

    We used multivariate and nonparametric statistics to examine persistence and stability of fish species in the upper 43 km of French Creek, New York. Species occurred in upstream and downstream groups in 1937 that persisted in 1979. However, the downstream group expanded its range in the drainage from 1937 to 1979 at the expense of the upstream group. A dam prevented further upstream expansion of the downstream group. Ranks of species abundances were stable, as tests of group similarity were significant. The abundances and distributions of benthic species were stable across seven sampling dates in 1980 despite several floods and repeated removals by sampling that could have altered community structure. We conclude that the fish community in French Creek persisted and was stable over the 42-yr interval, 1937-1979, and that abundances of benthic species were stable in summer 1980.

  18. Fish communities in sandy pool of Magela Creek, Alligator Rivers Region

    International Nuclear Information System (INIS)

    Woodland, D.J.; Ward, P.J.

    1992-01-01

    Physico-chemical conditions, changes in fish communities and characteristics of species populations of eight permanent sandy pools along Magela Creek during the 1981 Dry season are described. Causes of mortality in each species, especially Craterocephalus marianae, were investigated. It is emphasised that in using baseline data to assess the impact of mining and animal communities, it may sometimes be difficult to differentiate natural mortality from mortality resulting from pollution. The aim of this study was to distinguish the most important environmental factors responsible for fish mortality. The study indicates that the mortality was low (<50% of the original population) in most pools. In populations that did suffer high mortality, anoxic conditions may have been an important cause. 67 refs., 36 tabs., 21 figs., ills

  19. Reconstructing riverine mesohabitat unit composition using fish community data and an autecology matrix.

    Science.gov (United States)

    Suen, J P; Su, W C

    2010-09-01

    This research proposes a simplified method for estimating the mesohabitat composition that would favour members of a given set of aquatic species. The simulated composition of four types of mesohabitat units (deep pool, shallow pool, deep riffle and shallow riffle) could guide the design of in-stream structures in creating pool-riffle systems with ecological reference. Fish community data and an autecology matrix are used to support the development of a stream mesohabitat simulation based on regression models for reaches in mid to upper-order streams. The fish community-mesohabitat model results constitute a reference condition that can be used to guide stream restoration and ecological engineering decisions aimed at maintaining the natural ecological integrity and diversity of rivers. © 2010 The Authors. Journal compilation © 2010 The Fisheries Society of the British Isles.

  20. Fish-T1K (Transcriptomes of 1,000 Fishes) Project: large-scale transcriptome data for fish evolution studies.

    Science.gov (United States)

    Sun, Ying; Huang, Yu; Li, Xiaofeng; Baldwin, Carole C; Zhou, Zhuocheng; Yan, Zhixiang; Crandall, Keith A; Zhang, Yong; Zhao, Xiaomeng; Wang, Min; Wong, Alex; Fang, Chao; Zhang, Xinhui; Huang, Hai; Lopez, Jose V; Kilfoyle, Kirk; Zhang, Yong; Ortí, Guillermo; Venkatesh, Byrappa; Shi, Qiong

    2016-01-01

    Ray-finned fishes (Actinopterygii) represent more than 50 % of extant vertebrates and are of great evolutionary, ecologic and economic significance, but they are relatively underrepresented in 'omics studies. Increased availability of transcriptome data for these species will allow researchers to better understand changes in gene expression, and to carry out functional analyses. An international project known as the "Transcriptomes of 1,000 Fishes" (Fish-T1K) project has been established to generate RNA-seq transcriptome sequences for 1,000 diverse species of ray-finned fishes. The first phase of this project has produced transcriptomes from more than 180 ray-finned fishes, representing 142 species and covering 51 orders and 109 families. Here we provide an overview of the goals of this project and the work done so far.

  1. The importance of sponges and mangroves in supporting fish communities on degraded coral reefs in Caribbean Panama

    Directory of Open Access Journals (Sweden)

    Janina Seemann

    2018-03-01

    Full Text Available Fish communities associated with coral reefs worldwide are threatened by habitat degradation and overexploitation. We assessed coral reefs, mangrove fringes, and seagrass meadows on the Caribbean coast of Panama to explore the influences of their proximity to one another, habitat cover, and environmental characteristics in sustaining biomass, species richness and trophic structure of fish communities in a degraded tropical ecosystem. We found 94% of all fish across all habitat types were of small body size (≤10 cm, with communities dominated by fishes that usually live in habitats of low complexity, such as Pomacentridae (damselfishes and Gobiidae (gobies. Total fish biomass was very low, with the trend of small fishes from low trophic levels over-represented, and top predators under-represented, relative to coral reefs elsewhere in the Caribbean. For example, herbivorous fishes comprised 27% of total fish biomass in Panama relative to 10% in the wider Caribbean, and the small parrotfish Scarus iseri comprised 72% of the parrotfish biomass. We found evidence that non-coral biogenic habitats support reef-associated fish communities. In particular, the abundance of sponges on a given reef and proximity of mangroves were found to be important positive correlates of reef fish species richness, biomass, abundance and trophic structure. Our study indicates that a diverse fish community can persist on degraded coral reefs, and that the availability and arrangement within the seascape of other habitat-forming organisms, including sponges and mangroves, is critical to the maintenance of functional processes in such ecosystems.

  2. Fish communities in the Poodří Protected Landscape Area (the Odra River basin)

    Czech Academy of Sciences Publication Activity Database

    Lojkásek, B.; Lusk, Stanislav; Halačka, Karel; Lusková, Věra

    2004-01-01

    Roč. 49, č. 3 (2004), s. 121-130 ISSN 1212-1819 R&D Projects: GA AV ČR IAA6093105; GA ČR GA206/00/0824; GA AV ČR KSK6005114 Institutional research plan: CEZ:AV0Z6093917 Keywords : fish communities * River Odra * floodplain Subject RIV: EH - Ecology, Behaviour Impact factor: 0.227, year: 2004 http://www.cazv.cz/attachments/5-Lojkásek.pdf

  3. Habitat fragmentation and extinction rates within freshwater fish communities : a faunal relaxation approach

    OpenAIRE

    Hugueny, Bernard; Movellan, A.; Belliard, J.

    2011-01-01

    Aim To estimate population extinction rates within freshwater fish communities since the fragmentation of palaeo-rivers due to sea level rise at the end of the Pleistocene; to combine this information with rates estimated by other approaches (population surveys, fossil records); and to build an empirical extinction-area relationship. Location Temperate rivers from the Northern Hemisphere, with a special focus on rivers discharging into the English Channel, in north-western France. Methods (1)...

  4. Invasion of top and intermediate consumers in a size structured fish community

    OpenAIRE

    Ask, Per

    2010-01-01

    In this thesis I have investigated the effects of invading top and intermediate consumers in a size-structured fish community, using a combination of field studies, a lake invasion experiment and smaller scale pond and aquaria experiments. The lake invasion experiment was based on introductions of an intermediate consumer, ninespine stickleback (Pungitius pungitius L.), in to allopatric populations of an omnivorous top predator, Arctic char (Salvelinus alpinus L.). The invasion experiment was...

  5. Water quality improvements following political changes, enhanced fish communities, and fisheries in the Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Jurajda, Pavel; Peňáz, Milan; Reichard, Martin; Bernardová, I.

    2008-01-01

    Roč. 49, - (2008), s. 845-850. ISBN 978-1-888569-80-3. ISSN 0892-2284. [World fisheries congress /4./. Vancouver, 02.05.2004-06.05.2004] R&D Projects: GA AV ČR(CZ) IA66902; GA AV ČR IAB6093106 Institutional research plan: CEZ:AV0Z60930519 Keywords : fish communities * Morava River * water quality Subject RIV: EH - Ecology, Behaviour

  6. Status and trends in the fish community of Lake Superior, 2012

    Science.gov (United States)

    Gorman, Owen T.; Evrard, Lori M.; Cholwek, Gary A.; Vinson, Mark

    2012-01-01

    The Great Lakes Science Center has conducted daytime nearshore bottom trawl surveys of Lake Superior (15-80 m bathymetric depth zone) each spring since 1978 and an offshore survey (>80 m) since 2011 to provide long-term trends of relative abundance and biomass of the fish community. In 2012, 72 nearshore and 34 offshore stations were sampled with a 12-m Yankee bottom trawl.

  7. Effects of fish density and river fertilization on algal standing stocks, invertebrates communities, and fish production in an Arctic River

    Science.gov (United States)

    Deegan, Linda A.; Peterson, B.J.; Golden, H.; McIvor, C.C.; Miller, M.C.

    1997-01-01

    This study examined the relative importance of bottom-up and top-down controls of an arctic stream food web by simultaneous manipulation of the top predator and nutrient availability. We created a two-step trophic system (algae to insects) by removal of the top predator (Arctic grayling, Thymallus arcticus) in fertilized and control stream reaches. Fish abundance was also increased 10 times to examine the effect of high fish density on stream ecosystem dynamics and fish. We measured the response of epilithic algae, benthic and drifting insects, and fish to nutrient enrichment and to changes in fish density. Insect grazers had little effect on algae and fish had little effect on insects. In both the control and fertilized reaches, fish growth, energy storage, and reproductive response of females declined with increased fish density. Fish growth and energy storage were more closely correlated with per capita insect availability than with per capita algal standing stock

  8. Evolution of bacterial life-history traits is sensitive to community structure.

    Science.gov (United States)

    Ketola, Tarmo; Mikonranta, Lauri; Mappes, Johanna

    2016-06-01

    Very few studies have experimentally assessed the evolutionary effects of species interactions within the same trophic level. Here we show that when Serratia marcescens evolve in multispecies communities, their growth rate exceeds the growth rate of the bacteria that evolved alone, whereas the biomass yield gets lower. In addition to the community effects per se, we found that few species in the communities caused strong effects on S. marcescens evolution. The results indicate that evolutionary responses (of a focal species) are different in communities, compared to species evolving alone. Moreover, selection can lead to very different outcomes depending on the community structure. Such context dependencies cast doubt on our ability to predict the course of evolution in the wild, where species often inhabit very different kinds of communities. © 2016 The Author(s). Evolution © 2016 The Society for the Study of Evolution.

  9. Spatial variation in coral reef fish and benthic communities in the central Saudi Arabian Red Sea

    KAUST Repository

    Khalil, Maha T.

    2017-06-06

    Local-scale ecological information is critical as a sound basis for spatial management and conservation and as support for ongoing research in relatively unstudied areas. We conducted visual surveys of fish and benthic communities on nine reefs (3–24 km from shore) in the Thuwal area of the central Saudi Arabian Red Sea. Fish biomass increased with increasing distance from shore, but was generally low compared to reefs experiencing minimal human influence around the world. All reefs had a herbivore-dominated trophic structure and few top predators, such as sharks, jacks, or large groupers. Coral cover was considerably lower on inshore reefs, likely due to a 2010 bleaching event. Community analyses showed inshore reefs to be characterized by turf algae, slower-growing corals, lower herbivore diversity, and highly abundant turf-farming damselfishes. Offshore reefs had more planktivorous fishes, a more diverse herbivore assemblage, and faster-growing corals. All reefs appear to be impacted by overfishing, and inshore reefs seem more vulnerable to thermal bleaching. The study provides a description of the spatial variation in biomass and community structure in the central Saudi Arabian Red Sea and provides a basis for spatial prioritization and subsequent marine protected area design in Thuwal.

  10. Spatial variation in coral reef fish and benthic communities in the central Saudi Arabian Red Sea.

    Science.gov (United States)

    Khalil, Maha T; Bouwmeester, Jessica; Berumen, Michael L

    2017-01-01

    Local-scale ecological information is critical as a sound basis for spatial management and conservation and as support for ongoing research in relatively unstudied areas. We conducted visual surveys of fish and benthic communities on nine reefs (3-24 km from shore) in the Thuwal area of the central Saudi Arabian Red Sea. Fish biomass increased with increasing distance from shore, but was generally low compared to reefs experiencing minimal human influence around the world. All reefs had a herbivore-dominated trophic structure and few top predators, such as sharks, jacks, or large groupers. Coral cover was considerably lower on inshore reefs, likely due to a 2010 bleaching event. Community analyses showed inshore reefs to be characterized by turf algae, slower-growing corals, lower herbivore diversity, and highly abundant turf-farming damselfishes. Offshore reefs had more planktivorous fishes, a more diverse herbivore assemblage, and faster-growing corals . All reefs appear to be impacted by overfishing, and inshore reefs seem more vulnerable to thermal bleaching. The study provides a description of the spatial variation in biomass and community structure in the central Saudi Arabian Red Sea and provides a basis for spatial prioritization and subsequent marine protected area design in Thuwal.

  11. Spatial variation in coral reef fish and benthic communities in the central Saudi Arabian Red Sea

    Directory of Open Access Journals (Sweden)

    Maha T. Khalil

    2017-06-01

    Full Text Available Local-scale ecological information is critical as a sound basis for spatial management and conservation and as support for ongoing research in relatively unstudied areas. We conducted visual surveys of fish and benthic communities on nine reefs (3–24 km from shore in the Thuwal area of the central Saudi Arabian Red Sea. Fish biomass increased with increasing distance from shore, but was generally low compared to reefs experiencing minimal human influence around the world. All reefs had a herbivore-dominated trophic structure and few top predators, such as sharks, jacks, or large groupers. Coral cover was considerably lower on inshore reefs, likely due to a 2010 bleaching event. Community analyses showed inshore reefs to be characterized by turf algae, slower-growing corals, lower herbivore diversity, and highly abundant turf-farming damselfishes. Offshore reefs had more planktivorous fishes, a more diverse herbivore assemblage, and faster-growing corals. All reefs appear to be impacted by overfishing, and inshore reefs seem more vulnerable to thermal bleaching. The study provides a description of the spatial variation in biomass and community structure in the central Saudi Arabian Red Sea and provides a basis for spatial prioritization and subsequent marine protected area design in Thuwal.

  12. Spatial variation in coral reef fish and benthic communities in the central Saudi Arabian Red Sea

    KAUST Repository

    Khalil, Maha T.; Bouwmeester, Jessica; Berumen, Michael L.

    2017-01-01

    Local-scale ecological information is critical as a sound basis for spatial management and conservation and as support for ongoing research in relatively unstudied areas. We conducted visual surveys of fish and benthic communities on nine reefs (3–24 km from shore) in the Thuwal area of the central Saudi Arabian Red Sea. Fish biomass increased with increasing distance from shore, but was generally low compared to reefs experiencing minimal human influence around the world. All reefs had a herbivore-dominated trophic structure and few top predators, such as sharks, jacks, or large groupers. Coral cover was considerably lower on inshore reefs, likely due to a 2010 bleaching event. Community analyses showed inshore reefs to be characterized by turf algae, slower-growing corals, lower herbivore diversity, and highly abundant turf-farming damselfishes. Offshore reefs had more planktivorous fishes, a more diverse herbivore assemblage, and faster-growing corals. All reefs appear to be impacted by overfishing, and inshore reefs seem more vulnerable to thermal bleaching. The study provides a description of the spatial variation in biomass and community structure in the central Saudi Arabian Red Sea and provides a basis for spatial prioritization and subsequent marine protected area design in Thuwal.

  13. Research Note: Yavirau: A traditional Fijian fish drive as an example of culturally embedded community development

    Directory of Open Access Journals (Sweden)

    Fink, Michael

    2012-09-01

    Full Text Available A yavirau (traditional Fijian fish drive is an ancient Fijian custom which has been adapted to today’s needs. Implemented and organised by a village community without external assistance, this highly this culturally specific custom is an example of development on a local level. According to theorists and practitioners working on development issues, such a strategy for Community Development (CD is promising because it seizes current approaches as it fosters local, decentralised, cultural specific development and aims at a high level of local participation. This research note analyses a yavirau as an example of CD, showing its advantages as well as its limitations.

  14. Assessing the state of pelagic fish communities within an ecosystem approach and the European Marine Strategy Framework Directive

    DEFF Research Database (Denmark)

    Shephard, Samuel; Rindorf, Anna; Dickey-Collas, Mark

    2014-01-01

    Pelagic fish are key elements in marine foodwebs and thus comprise an important part of overall ecosystem health. We develop a suite of ecological indicators that track pelagic fish community state and evaluate state of specific objectives against Good Environmental Status (GES) criteria. Indicator...

  15. The composition of fish communities of nine Ethiopian lakes along a north-south gradient: threats and possible solutions

    NARCIS (Netherlands)

    Vijverberg, J.; Dejen, E.; Getahun, A.; Nagelkerke, L.A.J.

    2012-01-01

    Fish populations of nine Ethiopian freshwater lakes were quantitatively sampled with a standardized protocol, using multi-mesh gill nets. In total, 27 species were identified, but only 14 species were common. Based on the common species, the fish communities showed large differences in their species

  16. Geological differentiation explains diversity and composition of fish communities in upland streams in the southern Amazon of Colombia

    NARCIS (Netherlands)

    Arbeláez, F.; Duivenvoorden, J.F.; Maldonado-Ocampo, J.A.

    2008-01-01

    Fish biomass, species richness and composition were compared between upland streams draining two contrasting geological units (Pebas and Tsa) in Colombian Amazonia. Because Pebas sediments reportedly show higher levels of base concentrations than Tsa sediments, we expected that the fish communities

  17. The evolution of cooperative breeding in the African cichlid fish, Neolamprologus pulcher.

    Science.gov (United States)

    Wong, Marian; Balshine, Sigal

    2011-05-01

    The conundrum of why subordinate individuals assist dominants at the expense of their own direct reproduction has received much theoretical and empirical attention over the last 50 years. During this time, birds and mammals have taken centre stage as model vertebrate systems for exploring why helpers help. However, fish have great potential for enhancing our understanding of the generality and adaptiveness of helping behaviour because of the ease with which they can be experimentally manipulated under controlled laboratory and field conditions. In particular, the freshwater African cichlid, Neolamprologus pulcher, has emerged as a promising model species for investigating the evolution of cooperative breeding, with 64 papers published on this species over the past 27 years. Here we clarify current knowledge pertaining to the costs and benefits of helping in N. pulcher by critically assessing the existing empirical evidence. We then provide a comprehensive examination of the evidence pertaining to four key hypotheses for why helpers might help: (1) kin selection; (2) pay-to-stay; (3) signals of prestige; and (4) group augmentation. For each hypothesis, we outline the underlying theory, address the appropriateness of N. pulcher as a model species and describe the key predictions and associated empirical tests. For N. pulcher, we demonstrate that the kin selection and group augmentation hypotheses have received partial support. One of the key predictions of the pay-to-stay hypothesis has failed to receive any support despite numerous laboratory and field studies; thus as it stands, the evidence for this hypothesis is weak. There have been no empirical investigations addressing the key predictions of the signals of prestige hypothesis. By outlining the key predictions of the various hypotheses, and highlighting how many of these remain to be tested explicitly, our review can be regarded as a roadmap in which potential paths for future empirical research into the

  18. The gut microbial community of Midas cichlid fish in repeatedly evolved limnetic-benthic species pairs.

    Science.gov (United States)

    Franchini, Paolo; Fruciano, Carmelo; Frickey, Tancred; Jones, Julia C; Meyer, Axel

    2014-01-01

    Gut bacterial communities are now known to influence a range of fitness related aspects of organisms. But how different the microbial community is in closely related species, and if these differences can be interpreted as adaptive is still unclear. In this study we compared microbial communities in two sets of closely related sympatric crater lake cichlid fish species pairs that show similar adaptations along the limnetic-benthic axis. The gut microbial community composition differs in the species pair inhabiting the older of two crater lakes. One major difference, relative to other fish, is that in these cichlids that live in hypersaline crater lakes, the microbial community is largely made up of Oceanospirillales (52.28%) which are halotolerant or halophilic bacteria. This analysis opens up further avenues to identify candidate symbiotic or co-evolved bacteria playing a role in adaptation to similar diets and life-styles or even have a role in speciation. Future functional and phylosymbiotic analyses might help to address these issues.

  19. From fish to modern humans--comparative anatomy, homologies and evolution of the pectoral and forelimb musculature.

    Science.gov (United States)

    Diogo, R; Abdala, V; Aziz, M A; Lonergan, N; Wood, B A

    2009-05-01

    In a recent study Diogo & Abdala [(2007) J Morphol 268, 504-517] reported the results of the first part of a research project on the comparative anatomy, homologies and evolution of the pectoral muscles of osteichthyans (bony fish and tetrapods). That report mainly focused on actinopterygian fish but also compared these fish with certain non-mammalian sarcopterygians. This study, which reports the second part of the research project, focuses mainly on sarcopterygians and particularly on how the pectoral and forelimb muscles have evolved during the transitions from sarcopterygian fish and non-mammalian tetrapods to monotreme and therian mammals and humans. The data obtained by our own dissections of all the pectoral and forelimb muscles of representative members of groups as diverse as sarcopterygian fish, amphibians, reptiles, monotremes and therian mammals such as rodents, tree-shrews, colugos and primates, including humans, are compared with the information available in the literature. Our observations and comparisons clearly stress that, with regard to the number of pectoral and forelimb muscles, the most striking transition within sarcopterygian evolutionary history was that leading to the origin of tetrapods. Whereas extant sarcopterygian fish have an abductor and adductor of the fin and a largely undifferentiated hypaxial and epaxial musculature, extant salamanders such as Ambystoma have more than 40 pectoral and forelimb muscles. There is no clear increase in the number of pectoral and forelimb muscles within the evolutionary transition that led to the origin of mammals and surely not to that leading to the origin of primates and humans.

  20. Baseline assessment of fish communities of the Flower Garden Banks (2010 - 2013) using technical diving operations: 2011

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The proposed work develop baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys will employ...

  1. Red Lionfish (Pterois volitans Invade San Salvador, Bahamas: No Early Effects on Coral and Fish Communities

    Directory of Open Access Journals (Sweden)

    Alexander, Amanda K.

    2011-10-01

    Full Text Available Biological invaders are a leading contributor to global losses of biodiversity. A recent invader to the waters surrounding San Salvador, Bahamas, the red lionfish, Pterois volitans, was first reported in 2006; by 2009 they were common in waters 2-40 m deep around the island. Our study collected data on coral communities and fish assemblages at three patch reef complexes (Rice Bay, Rocky Point, Lindsay Reef in 2007, during the initial phase of the invasion, and compared the results to a nearly identical study done in 2001 before P. volitans colonized San Salvador. Prey selection and quantity of consumption by P. volitans were also examined. Coral and fish species richness, diversity, percent cover (corals and abundance (fish were similar in 2001 and 2007. Of the 5,078 fish recorded during our study on shallow patch reefs, only two were P. volitans, but they were more prevalent in deeper water along San Salvador’s “wall.” Captured P. volitans ranged in size from 19-32 cm, all longer than maturity length. Pallid goby (Coryphopterus eidolon, black cap basslet (Gramma melacara and red night shrimp (Rynchocienetes rigens were the most commonly identified stomach contents. The effects of the successful invasion and increasing population of P. volitans on San Salvador’s reef ecosystem are uncertain at this time; future monitoring of potential changes in coral and fish communities on the patch reefs of San Salvador is recommended to determine if population control measures need to be considered. Initial post-invasion data (2007, along with pre-invasion data (2001, are valuable benchmarks for future studies.

  2. The Evolution of Vicia ramuliflora (Fabaceae) at Tetraploid and Diploid Levels Revealed with FISH and RAPD

    Science.gov (United States)

    Han, Ying; Liu, Yuan; Wang, Haoyou; Liu, Xiangjun

    2017-01-01

    Vicia ramuliflora L. is a widely distributed species in Eurasia with high economic value. For past 200 years, it has evolved a tetraploid cytotype and new subspecies at the diploid level. Based on taxonomy, cytogeography and other lines of evidence, previous studies have provided valuable information about the evolution of V. ramuliflora ploidy level, but due to the limited resolution of traditional methods, important questions remain. In this study, fluorescence in situ hybridization (FISH) and random amplified polymorphic DNA (RAPD) were used to analyze the evolution of V. ramuliflora at the diploid and tetraploid levels. Our aim was to reveal the genomic constitution and parents of the tetraploid V. ramuliflora and the relationships among diploid V. ramuliflora populations. Our study showed that the tetraploid cytotype of V. ramuliflora at Changbai Mountains (M) has identical 18S and 5S rDNA distribution patterns with the diploid Hengdaohezi population (B) and the diploid Dailing population (H). However, UPGMA clustering, Neighbor-Joining clustering and principal coordinates analysis based on RAPD showed that the tetraploid cytotype (M) has more close relationships with Qianshan diploid population T. Based on our results and the fact that interspecific hybridization among Vicia species is very difficult, we think that the tetraploid V. ramuliflora is an autotetraploid and its genomic origin still needs further study. In addition, our study also found that Qianshan diploid population (T) had evolved distinct new traits compared with other diploid populations, which hints that V. ramuliflora evolved further at diploid level. We suggest that diploid population T be re-classified as a new subspecies. PMID:28135314

  3. Rapid and Parallel Adaptive Evolution of the Visual System of Neotropical Midas Cichlid Fishes.

    Science.gov (United States)

    Torres-Dowdall, Julián; Pierotti, Michele E R; Härer, Andreas; Karagic, Nidal; Woltering, Joost M; Henning, Frederico; Elmer, Kathryn R; Meyer, Axel

    2017-10-01

    Midas cichlid fish are a Central American species flock containing 13 described species that has been dated to only a few thousand years old, a historical timescale infrequently associated with speciation. Their radiation involved the colonization of several clear water crater lakes from two turbid great lakes. Therefore, Midas cichlids have been subjected to widely varying photic conditions during their radiation. Being a primary signal relay for information from the environment to the organism, the visual system is under continuing selective pressure and a prime organ system for accumulating adaptive changes during speciation, particularly in the case of dramatic shifts in photic conditions. Here, we characterize the full visual system of Midas cichlids at organismal and genetic levels, to determine what types of adaptive changes evolved within the short time span of their radiation. We show that Midas cichlids have a diverse visual system with unexpectedly high intra- and interspecific variation in color vision sensitivity and lens transmittance. Midas cichlid populations in the clear crater lakes have convergently evolved visual sensitivities shifted toward shorter wavelengths compared with the ancestral populations from the turbid great lakes. This divergence in sensitivity is driven by changes in chromophore usage, differential opsin expression, opsin coexpression, and to a lesser degree by opsin coding sequence variation. The visual system of Midas cichlids has the evolutionary capacity to rapidly integrate multiple adaptations to changing light environments. Our data may indicate that, in early stages of divergence, changes in opsin regulation could precede changes in opsin coding sequence evolution. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  4. New insights on early evolution of spiny-rayed fishes (Teleostei: Acanthomorpha

    Directory of Open Access Journals (Sweden)

    Wei-Jen eChen

    2014-10-01

    Full Text Available The Acanthomorpha is the largest group of teleost fishes with about one third of extant vertebrate species. In the course of its evolution this lineage experienced several episodes of radiation, leading to a large number of descendant lineages differing profoundly in morphology, ecology, distribution and behavior. Although Acanthomorpha was recognized decades ago, we are only now beginning to decipher its large-scale, time-calibrated phylogeny, a prerequisite to test various evolutionary hypotheses explaining the tremendous diversity of this group. In this study, we provide new insights into the early evolution of the acanthomorphs and the euteleost allies based on the phylogenetic analysis of a newly developed dataset combining nine nuclear and mitochondrial gene markers. Our inferred tree is time-calibrated using 15 fossils, some of which have not been used before. While our phylogeny strongly supports a monophyletic Neoteleostei, Ctenosquamata (i.e., Acanthomorpha plus Myctophiformes, and Acanthopterygii, we find weak support (bootstrap value < 48% for the traditionally defined Acanthomorpha, as well as evidence of non-monophyly for the traditional Paracanthopterygii, Beryciformes, and Percomorpha. We corroborate the new Paracanthopterygii sensu Miya et al. (2005 including Polymixiiformes, Zeiformes, Gadiformes, Percopsiformes, and likely the enigmatic Stylephorus chordatus. Our timetree largely agrees with other recent studies based on nuclear loci in inferring an Early Cretaceous origin for the acanthomorphs followed by a Late Cretaceous/Early Paleogene radiation of major lineages. This is in contrast to mitogenomic studies mostly inferring Jurassic or even Triassic ages for the origin of the acanthomorphs. We compare our results to those of previous studies, and attempt to address some of the issues that may have led to incongruence between the fossil record and the molecular clock studies, as well as between the different molecular

  5. A fish is not a fish: patterns in fatty acid composition of aquatic food may have had implications for hominin evolution.

    Science.gov (United States)

    Joordens, Josephine C A; Kuipers, Remko S; Wanink, Jan H; Muskiet, Frits A J

    2014-12-01

    From c. 2 Ma (millions of years ago) onwards, hominin brain size and cognition increased in an unprecedented fashion. The exploitation of high-quality food resources, notably from aquatic ecosystems, may have been a facilitator or driver of this phenomenon. The aim of this study is to contribute to the ongoing debate on the possible role of aquatic resources in hominin evolution by providing a more detailed nutritional context. So far, the debate has focused on the relative importance of terrestrial versus aquatic resources while no distinction has been made between different types of aquatic resources. Here we show that Indian Ocean reef fish and eastern African lake fish yield on average similarly high amounts of eicosapentaenoic acid (EPA), docosahexaenoic acid (DHA), and arachidonic acid (AA). Hence a shift from exploiting tropical marine to freshwater ecosystems (or vice versa) would entail no material difference in dietary long-chain polyunsaturated fatty acid (LC-PUFA) availability. However, a shift to marine ecosystems would likely mean a major increase in access to brain-selective micronutrients such as iodine. Fatty fish from marine temperate/cold waters yield twice as much DHA and four times as much EPA as tropical fish, demonstrating that a latitudinal shift in exploitation of African coastal ecosystems could constitute a significant difference in LC-PUFA availability with possible implications for brain development and functioning. We conclude that exploitation of aquatic food resources could have facilitated the initial moderate hominin brain increase as observed in fossils dated to c. 2 Ma, but not the exceptional brain increase in later stages of hominin evolution. We propose that the significant expansion in hominin brain size and cognition later on may have been aided by strong directional selecting forces such as runaway sexual selection of intelligence, and nutritionally supported by exploitation of high-quality food resources in stable and

  6. Importance of Natural and Anthropogenic Environmental Factors to Fish Communities of the Fox River in Illinois

    Science.gov (United States)

    Schnier, Spencer; Cai, Ximing; Cao, Yong

    2016-02-01

    The dominant environmental determinants of aquatic communities have been a persistent topic for many years. Interactions between natural and anthropogenic characteristics within the aquatic environment influence fish communities in complex ways that make the effect of a single characteristic difficult to ascertain. Researchers are faced with the question of how to deal with a large number of variables and complex interrelationships. This study utilized multiple approaches to identify key environmental variables to fish communities of the Fox River Basin in Illinois: Pearson and Spearman correlations, an algorithm based on information theory called mutual information, and a measure of variable importance built into the machine learning algorithm Random Forest. The results are based on a dataset developed for this study, which uses a fish index of biological integrity (IBI) and its ten component metrics as response variables and a range of environmental variables describing geomorphology, stream flow statistics, climate, and both reach-scale and watershed-scale land use as independent variables. Agricultural land use and the magnitude and duration of low flow events were ranked by the algorithms as key factors for the study area. Reach-scale characteristics were dominant for native sunfish, and stream flow metrics were rated highly for native suckers. Regression tree analyses of environmental variables on fish IBI identified breakpoints in percent agricultural land in the watershed (~64 %), duration of low flow pulses (~12 days), and 90-day minimum flow (~0.13 cms). The findings should be useful for building predictive models and design of more effective monitoring systems and restoration plans.

  7. Ecomorphology as a predictor of fish diet: a case study on the North Sea benthic fish community

    NARCIS (Netherlands)

    Diderich, W.P.

    2006-01-01

    A methodological approach based on fish ecomorphology was chosen to predict potential fish diet. This study tests a method used in earlier research on a marine ecosystem containing phylogenetically diverse organisms: the North Sea. Fish feeding morphology imposes constraints on feeding options. A

  8. From fish to fashion: experimental and theoretical insights into the evolution of culture

    OpenAIRE

    Laland, K. N.; Atton, N.; Webster, M. M.

    2011-01-01

    Recent years have witnessed a re-evaluation of the cognitive capabilities of fishes, including with respect to social learning. Indeed, some of the best experimental evidence for animal traditions can be found in fishes. Laboratory experimental studies reveal that many fishes acquire dietary, food site and mating preferences, predator recognition and avoidance behaviour, and learn pathways, through copying1 other fishes. Concentrating on foraging behaviour, we will present the findings of lab...

  9. [Changes in fish communities of coral reefs at Sabana-Camagüey Archipelago, Cuba].

    Science.gov (United States)

    Claro, Rodolfo; Cantelar, Karel; Amargós, Fabián Pina; García-Arteaga, Juan P

    2007-06-01

    A comparison of fish community structure in the Sabana-Camagüey Archipelago (1988-1989 and 2000) using visual census surveys (eight belt transects 2x50 m in each site) suggests a notable decrease on species richness, and a two thirds reduction in fish density and biomass on coral reefs. This decrease in fish populations may be related to the alarming decrease of scleractinian coral cover, and an enormous proliferation of algae, which currently covers 70-80% of the hard substrate, impeding the recovery of corals and other benthic organisms. High coral mortalities occurred between the study periods, which correlate with the high temperatures caused by the ENSO events of 1995, 1997 and 1998. These events caused massive bleaching of corals and subsequent algae overgrowth. Evidence of nutrient enrichment from the inner lagoons and overfishing are also present. Collectively, these effects have provoked a marked degradation of reef habitats. These changes appear to have affected the availability of refuges and food for fishes, and may be constraining individual growth potential and population size.

  10. Assessing the effect of marine reserves on household food security in Kenyan coral reef fishing communities.

    Directory of Open Access Journals (Sweden)

    Emily S Darling

    Full Text Available Measuring the success or failure of natural resource management is a key challenge to evaluate the impact of conservation for ecological, economic and social outcomes. Marine reserves are a popular tool for managing coastal ecosystems and resources yet surprisingly few studies have quantified the social-economic impacts of marine reserves on food security despite the critical importance of this outcome for fisheries management in developing countries. Here, I conducted semi-structured household surveys with 113 women heads-of-households to investigate the influence of two old, well-enforced, no-take marine reserves on food security in four coastal fishing communities in Kenya, East Africa. Multi-model information-theoretic inference and matching methods found that marine reserves did not influence household food security, as measured by protein consumption, diet diversity and food coping strategies. Instead, food security was strongly influenced by fishing livelihoods and household wealth: fishing families and wealthier households were more food secure than non-fishing and poorer households. These findings highlight the importance of complex social and economic landscapes of livelihoods, urbanization, power and gender dynamics that can drive the outcomes of marine conservation and management.

  11. On the structure of the inshore fish community of England and Wales

    International Nuclear Information System (INIS)

    Henderson, P.A.

    1988-12-01

    Records of fish captures on power station intake screens were used to analyse the structure of the English and Welsh inshore fish community. The study was undertaken as part of a programme to predict fish captures at future power station sites. It was found that 118 of the 122 fish species known to live inshore were recorded from the screens of only 12 coastal power stations. The minimum number of species at one site was about 80, found at fully marine localities along the English Channel coast. This number declined with increasing latitude and decreasing salinity. On average, 28 species were present simultaneously and these would include four pelagic, eight demersal and 16 benthic species. There was found to be 31 dominant species which comprised greater than 96% of the total catch by weight or number at all of the sites. These can be considered as the key species through which most of the energy and nutrients in the ecosystem must travel. The major factors determining the abundance of these species were salinity, degree of shelter, summer temperatures and winter temperatures. (author)

  12. Statistical power to detect change in a mangrove shoreline fish community adjacent to a nuclear power plant.

    Science.gov (United States)

    Dolan, T E; Lynch, P D; Karazsia, J L; Serafy, J E

    2016-03-01

    An expansion is underway of a nuclear power plant on the shoreline of Biscayne Bay, Florida, USA. While the precise effects of its construction and operation are unknown, impacts on surrounding marine habitats and biota are considered by experts to be likely. The objective of the present study was to determine the adequacy of an ongoing monitoring survey of fish communities associated with mangrove habitats directly adjacent to the power plant to detect fish community changes, should they occur, at three spatial scales. Using seasonally resolved data recorded during 532 fish surveys over an 8-year period, power analyses were performed for four mangrove fish metrics (fish diversity, fish density, and the occurrence of two ecologically important fish species: gray snapper (Lutjanus griseus) and goldspotted killifish (Floridichthys carpio). Results indicated that the monitoring program at current sampling intensity allows for detection of <33% changes in fish density and diversity metrics in both the wet and the dry season in the two larger study areas. Sampling effort was found to be insufficient in either season to detect changes at this level (<33%) in species-specific occurrence metrics for the two fish species examined. The option of supplementing ongoing, biological monitoring programs for improved, focused change detection deserves consideration from both ecological and cost-benefit perspectives.

  13. [The fish community in the Términos lagoon: compared current structure].

    Science.gov (United States)

    Amado Ayala-Pérez, Luis; Ramos Miranda, Julia; Flores Hernández, Domingo

    2003-01-01

    The structure of the fish community in Terminos Lagoon, Campeche, is analyzed on the base the description of the abundance, distribution, length composition and identification of the dominant species. The results are discussed and compared with the published information. 437 trawl tows were made in 19 monthly collection in 23 sites between September 1997 to March 1999. A total of 25,588 individual with a total weight of 601.5 kg were grouped in 107 species, 76 gender and 37 families. The abundance of the fish community showed the following intervals in temporal scale: 0.395 to 0.895 ind/m2; 8.637 to 18.316 g/m2 and 18.358 to 34.837 g/ind. The Shannon index oscillated between 1.875 and 3.995 and 4.94 and 7.88 respectively. 18 dominant species were identified. The most important species by its numerical abundance and appearance frequency is Arius melanopus that represents to the 26.5% of the total catch followed by Diapterus rhombeus with 18.9%. As dominant species, Bairdiella chrysura, B. ronchus, Archosargus rhomboidalis, Eugerres plumieri, Cynoscion arenarius and Chaetodipterus faber, are fishing resources with local and regional value.

  14. Water clarity of the Colorado River—Implications for food webs and fish communities

    Science.gov (United States)

    Voichick, Nicholas; Kennedy, Theodore A.; Topping, David; Griffiths, Ronald; Fry, Kyrie

    2016-11-01

    The closure of Glen Canyon Dam in 1963 resulted in drastic changes to water clarity, temperature, and flow of the Colorado River in Glen, Marble, and Grand Canyons. The Colorado River is now much clearer, water temperature is less variable throughout the year, and the river is much colder in the summer months. The flow—regulated by the dam—is now less variable annually, but has larger daily fluctuations than during pre-dam times. All of these changes have resulted in a different fish community and different food resources for fish than existed before the dam was built. Recent monitoring of water clarity, by measuring turbidity, has helped scientists and river managers understand modern water-clarity patterns in the dam-regulated Colorado River. These data were then used to estimate pre-dam turbidity in the Colorado River in order to make comparisons of pre-dam and dam-regulated conditions, which are useful for assessing biological changes in the river over time. Prior to dam construction, the large sediment load resulted in low water clarity almost all of the time, a condition which was more favorable for the native fish community.

  15. Distribution and habitat use of the Missouri River and Lower Yellowstone River benthic fishes from 1996 to 1998: A baseline for fish community recovery

    Science.gov (United States)

    Wildhaber, M.L.; Gladish, D.W.; Arab, A.

    2011-01-01

    Past and present Missouri River management practices have resulted in native fishes being identified as in jeopardy. In 1995, the Missouri River Benthic Fishes Study was initiated to provide improved information on Missouri River fish populations and how alterations might affect them. The study produced a baseline against which to evaluate future changes in Missouri River operating criteria. The objective was to evaluate population structure and habitat use of benthic fishes along the entire mainstem Missouri River, exclusive of reservoirs. Here we use the data from this study to provide a recent-past baseline for on-going Missouri River fish population monitoring programmes along with a more powerful method for analysing data containing large percentages of zero values. This is carried out by describing the distribution and habitat use of 21 species of Missouri River benthic fishes based on catch-per-unit area data from multiple gears. We employ a Bayesian zero-inflated Poisson model expanded to include continuous measures of habitat quality (i.e. substrate composition, depth, velocity, temperature, turbidity and conductivity). Along with presenting the method, we provide a relatively complete picture of the Missouri River benthic fish community and the relationship between their relative population numbers and habitat conditions. We demonstrate that our single model provides all the information that is often obtained by a myriad of analytical techniques. An important advantage of the present approach is reliable inference for patterns of relative abundance using multiple gears without using gear efficiencies.

  16. Ecology of selected marine communities in Glacier Bay: Zooplankton, forage fish, seabirds and marine mammals

    Science.gov (United States)

    Robards, Martin D.; Drew, Gary S.; Piatt, John F.; Anson, Jennifer Marie; Abookire, Alisa A.; Bodkin, James L.; Hooge, Philip N.; Speckman, Suzann G.

    2003-01-01

    We studied oceanography (including primary production), secondary production, small schooling fish (SSF), and marine bird and mammal predators in Glacier Bay during 1999 and 2000. Results from these field efforts were combined with a review of current literature relating to the Glacier Bay environment. Since the conceptual model developed by Hale and Wright (1979) ‘changes and cycles’ continue to be the underlying theme of the Glacier Bay ecosystem. We found marked seasonality in many of the parameters that we investigated over the two years of research, and here we provide a comprehensive description of the distribution and relative abundance of a wide array of marine biota. Glacier Bay is a tidally mixed estuary that leads into basins, which stratify in summer, with the upper arms behaving as traditional estuaries. The Bay is characterized by renewal and mixing events throughout the year, and markedly higher primary production than in many neighboring southeast Alaska fjords (Hooge and Hooge, 2002). Zooplankton diversity and abundance within the upper 50 meters of the water column in Glacier Bay is similar to communities seen throughout the Gulf of Alaska. Zooplankton in the lower regions of Glacier Bay peak in abundance in late May or early June, as observed at Auke Bay and in the Gulf of Alaska. The key distinction between the lower Bay and other estuaries in the Gulf of Alaska is that a second smaller peak in densities occurs in August. The upper Bay behaved uniformly in temporal trends, peaking in July. Densities had begun to decline in August, but were still more than twice those observed in that region in May. The highest density of zooplankton observed was 17,870 organisms/m3 in Tarr Inlet during July. Trends in zooplankton community abundance and diversity within the lower Bay were distinct from upper-Glacier Bay trends. Whereas the lower Bay is strongly influenced by Gulf of Alaska processes, local processes are the strongest influence in the upper

  17. Expanding perceptions of subsistence fish consumption: evidence of high commercial fish consumption and dietary mercury exposure in an urban coastal community.

    Science.gov (United States)

    Holloman, Erica L; Newman, Michael C

    2012-02-01

    Through collaborative partnerships established between current researchers and The Moton Community House (a local community center), African American women (ages 16-49yrs) from the Southeast Community of Newport News, Virginia, USA were surveyed to assess the reproducibility and consistency of fish consumption patterns (ingestion rates, exposure frequencies, weight, and fish consumption rates) derived from a community-specific fish consumption survey. Women were also surveyed to assess the reliability of the survey responses, and to estimate daily mercury intake. Fish consumption patterns were reproducible and the survey responses were reliable. Comparison between years revealed that fish consumption patterns remained consistent over time. In addition, the high fish consumption rate estimated in 2008 (147.8g/day; 95% CI: 117.6-185.8g/day) was confirmed with a rate (134.9g/day; 95% CI: 88-207g/day) not materially different and still considerably higher than mean fish consumption rates reported for U.S. women. Daily mercury intake rates were estimated using consumption data from 2008 and three consumption scenarios (canned white, canned light, and no tuna) due to confirmed differences in mercury concentration between canned white and light tuna. Arithmetic mean daily mercury intake rates were 0.284μg/kg bw/day (95% CI: 0.229-0.340μg/kg bw/day) using canned white tuna, 0.212μg/kg bw/day (95% CI: 0.165-0.259μg/kg bw/day) using light tuna, and 0.197μg/kg bw/day (95% CI: 0.151-0.243μg/kg bw/day) using no tuna. Approximately 58%-73% of the daily mercury intake rates for African American women in the Southeast Community exceeded US EPA's oral reference dose (RfD) of 0.10μg/kg bw/day for mercury. In addition, 2% of the rates exceeded a level (1.00μg/kg bw/day) documented to produce adverse health effects. Past and current investigations confirmed that even though women in this community were not subsistence fishers, they are subsistence fish consumers. Copyright

  18. Struktur Komunitas Ikan Karang di Perairan Kendari (Community Structure of Coral Reef Fishes at Kendari Waters

    Directory of Open Access Journals (Sweden)

    Muhammad Adrim

    2012-09-01

    Full Text Available Keberadaan ikan karang merupakan salah satu bioindikator terhadap kondisi terumbu karang yang baik. Penelitian ikan karang di perairan Kendari bertujuan untuk mengetahui komposisi jenis, kelimpahan, sebaran, dan struktur komunitas ikan karang di perairan tersebut. Pengumpulan data dilakukan bulan Juli 2011 pada lima lokasi di bagian utara dan selatan Kendari. Data dihimpun dengan menggunakan teknik Underwater Visual Census (UVC dan metode transek (Line Intersept Transect, LIT dengan peralatan SCUBA. Total jenis ikan karang terkumpul sebanyak 111 jenis yang mewakili 24 famili, terdiri dari 31 jenis ikan target (ikan konsumsi, 17 jenis ikan indikator (indicator species, dan kelompok major 63 jenis. Kelornpok ikan pangan (target yang dominan; Caesio cuning, Siganus vulpinus dan Ctenochaetus striatus. Jenis yang paling dominan dari ikan indikator adalah Chaetodon octofasciatus. Sedangkan kelompok lainnya (major yang dominan adalah Pomacentrus smithii, Chrysiptera rollandi, Chrysiptera springeri, dan Pomacentrus alexanderae. Nilai Indeks keanekaragaman berkisar 1,36– 3,23. Indeks dominasi Margalef (d berkisar 4,74–8,66. Indeks kemerataan Pielou (J’=H’/logeS diperololeh pada kisaran 0,38–0,81 . Hasil analisis kluster pada matrik kesamaan Bray-Curtis 37 % diperoleh dendrograrn yang menunjukkan dua pengelompokan stasiun. Berdasarkan ordinasi sampel dengan MDS diperoleh dari kesamaan (stress= 0 dengan jelas menunjukkan dua komunitas yang berbeda. Hasil penelitian ini diharapkan dapat menjadi masukan sebagai data dasar untuk pengelolaan daerah pesisir bagi pemerintahan daerah (PEMDA. Kata kunci: ikan karang, struktur komunitas, indeks ekologi, perairan Kendari. Coral reef Fishes is one of bio-indicators for good condition coral reef ecosystem. A study on coral reef fishes in the Kendari waters was aimed to find out species composition, abundance, distribution and community structure of coral reef fishes in that area. The study was conducted in

  19. Seasonal variation and community structure of fishes in the Mahananda River with special reference to conservation issues

    Directory of Open Access Journals (Sweden)

    Shams Muhammad Galib

    2016-04-01

    Full Text Available This study was carried out in the Mahananda River from January to December 2013 with a view to determining the seasonal variation and community structure of fishes along with some conservation issues. Monthly sampling was carried out using traditional fishing gears and fishes were identified based on morphometric and meristic characters. A total of 4082 individuals of native fish species were captured, analyzed and classified into 62 species belonging to 46 genera, 25 families and 9 orders. Cypriniformes and Siluriformes were the dominant fish orders represented by 19 species each and the most abundant family was Cyprinidae (14 species. In addition to indigenous individuals, 9 individuals of 2 exotic fish species (Hypophthalmichthys molitrix and Pangasius hypophthalmus were also recorded. Among three sampling sites, S-1 was the most diversified in terms of not only the number of individual fish but also the number of species present represented by mean (±SE individuals of 151.50±25.22 and species of 25.58±3.91. Three distinct fish groups of fish families were revealed from the cluster analysis of similarity. To improve the situation, control of illegal fishing gears, establishment of sanctuaries and legal protection for threatened species are recommended.

  20. Ethnotaxonomical considerations and usage of ichthyofauna in a fishing community in Ceará State, Northeast Brazil.

    Science.gov (United States)

    Pinto, Márcia Freire; Mourão, José da Silva; Alves, Rômulo Romeu Nóbrega

    2013-03-08

    Artisanal fishery is one of the most important economic activities for human populations living in coastal areas. The traditional knowledge that fishermen have of fishes is of utmost importance for the establishment of conservation strategies for many species. This study aimed to analyse the knowledge of and utilization of fishes by the artisanal fishermen in a fishing community on the coast of Ceará State (Northeast Brazil). In 2011, a number of semi-structured interviews were performed with fishermen with more than 20 years of fishery experience. The interviews were about fisheries (collecting spots, artefacts, etc.) and fish use. The fishes cited by the fishermen were identified scientifically and ethnotaxonomically. Considered masters of fishery, they cited 162 vernacular names of fishes, which corresponded to 290 different species, also including other animals such as dolphins, porpoises, whales and manatees. The criteria for the classification of the fishes were well known and utilised by the fishermen, and they were based on morphology, behaviour, habitat and the importance of commercial and fishing activities. Four hierarchical categories were identified in their classification system: kingdom, life-form, generic and specific. The fish nomenclature created by the fishermen was mostly composed of generic and monotypic names. The main uses of fish were for food and commercial purposes. The results stress the richness and complexity of the knowledge of the artisanal fishermen of Redonda Beach, and they provide support for the possibility of future studies and for the development of management plans and the management of wildlife resources.

  1. Evaluating the effectiveness of restoring longitudinal connectivity for stream fish communities: towards a more holistic approach.

    Science.gov (United States)

    Tummers, Jeroen S; Hudson, Steve; Lucas, Martyn C

    2016-11-01

    A more holistic approach towards testing longitudinal connectivity restoration is needed in order to establish that intended ecological functions of such restoration are achieved. We illustrate the use of a multi-method scheme to evaluate the effectiveness of 'nature-like' connectivity restoration for stream fish communities in the River Deerness, NE England. Electric-fishing, capture-mark-recapture, PIT telemetry and radio-telemetry were used to measure fish community composition, dispersal, fishway efficiency and upstream migration respectively. For measuring passage and dispersal, our rationale was to evaluate a wide size range of strong swimmers (exemplified by brown trout Salmo trutta) and weak swimmers (exemplified by bullhead Cottus perifretum) in situ in the stream ecosystem. Radio-tracking of adult trout during the spawning migration showed that passage efficiency at each of five connectivity-restored sites was 81.3-100%. Unaltered (experimental control) structures on the migration route had a bottle-neck effect on upstream migration, especially during low flows. However, even during low flows, displaced PIT tagged juvenile trout (total n=153) exhibited a passage efficiency of 70.1-93.1% at two nature-like passes. In mark-recapture experiments juvenile brown trout and bullhead tagged (total n=5303) succeeded in dispersing upstream more often at most structures following obstacle modification, but not at the two control sites, based on a Laplace kernel modelling approach of observed dispersal distance and barrier traverses. Medium-term post-restoration data (2-3years) showed that the fish assemblage remained similar at five of six connectivity-restored sites and two control sites, but at one connectivity-restored headwater site previously inhabited by trout only, three native non-salmonid species colonized. We conclude that stream habitat reconnection should support free movement of a wide range of species and life stages, wherever retention of such

  2. Response of fish communities to intense drought in Brazilian savanna streams

    Directory of Open Access Journals (Sweden)

    Dianne Michelle Alves da Silva

    2017-08-01

    Full Text Available The physical structures of streams are subjected to intense changes throughout the seasons. Intense drought in dry periods has been frequent and potentially harmful to aquatic species. In this study, we tested whether the changes in the habitat structure of the streams during the dry period determine the organization of fish communities. Five streams in the Upper Tocantins River were studied in the dry and rainy seasons. The species were characterized by 13 functional traits based on morphological measurements. The descriptors of functional diversity were: mean pairwise functional distance of species in the community (MPD and mean functionally nearest species distance (MNTD. We also calculated the standardized effect size for MPD and MNTD, an indicator of functional redundancy, and compared the observed patterns with those expected by chance. Streams differed between seasons with respect to environmental variables. Functional diversity in the rainy season did not differ from the pattern expected by chance for both metrics. While functional diversity in the dry season has not differed from the pattern expected by chance for SESMPD, a greater functional redundancy for SESMNTD was found in this season. These results indicate that environmental changes in the streams during the dry season are important constraints for fish occurrence, preventing the occurrence of functionally original species. Therefore, a prospective scenario of dry-period intensification could result in functionally redundant communities, with functional homogenization of the regional species pool.

  3. Evolution of opercle shape in cichlid fishes from Lake Tanganyika - adaptive trait interactions in extant and extinct species flocks.

    Science.gov (United States)

    Wilson, Laura A B; Colombo, Marco; Sánchez-Villagra, Marcelo R; Salzburger, Walter

    2015-11-20

    Phenotype-environment correlations and the evolution of trait interactions in adaptive radiations have been widely studied to gain insight into the dynamics underpinning rapid species diversification. In this study we explore the phenotype-environment correlation and evolution of operculum shape in cichlid fishes using an outline-based geometric morphometric approach combined with stable isotope indicators of macrohabitat and trophic niche. We then apply our method to a sample of extinct saurichthyid fishes, a highly diverse and near globally distributed group of actinopterygians occurring throughout the Triassic, to assess the utility of extant data to inform our understanding of ecomorphological evolution in extinct species flocks. A series of comparative methods were used to analyze shape data for 54 extant species of cichlids (N = 416), and 6 extinct species of saurichthyids (N = 44). Results provide evidence for a relationship between operculum shape and feeding ecology, a concentration in shape evolution towards present along with evidence for convergence in form, and significant correlation between the major axes of shape change and measures of gut length and body elongation. The operculum is one of few features that can be compared in extant and extinct groups, enabling reconstruction of phenotype-environment interactions and modes of evolutionary diversification in deep time.

  4. Phylogenetic analyses provide insights into the historical biogeography and evolution of Brachyrhaphis fishes.

    Science.gov (United States)

    Ingley, Spencer J; Reina, Ruth G; Bermingham, Eldredge; Johnson, Jerald B

    2015-08-01

    The livebearing fish genus Brachyrhaphis (Poeciliidae) has become an increasingly important model in evolution and ecology research, yet the phylogeny of this group is not well understood, nor has it been examined thoroughly using modern phylogenetic methods. Here, we present the first comprehensive phylogenetic analysis of Brachyrhaphis by using four molecular markers (3mtDNA, 1nucDNA) to infer relationships among species in this genus. We tested the validity of this genus as a monophyletic group using extensive outgroup sampling based on recent phylogenetic hypotheses of Poeciliidae. We also tested the validity of recently described species of Brachyrhaphis that are part of the B. episcopi complex in Panama. Finally, we examined the impact of historical events on diversification of Brachyrhaphis, and made predictions regarding the role of different ecological environments on evolutionary diversification where known historical events apparently fail to explain speciation. Based on our results, we reject the monophyly of Brachyrhaphis, and question the validity of two recently described species (B. hessfeldi and B. roswithae). Historical biogeography of Brachyrhaphis generally agrees with patterns found in other freshwater taxa in Lower Central America, which show that geological barriers frequently predict speciation. Specifically, we find evidence in support of an 'island' model of Lower Central American formation, which posits that the nascent isthmus was partitioned by several marine connections before linking North and South America. In some cases where historic events (e.g., vicariance) fail to explain allopatric species breaks in Brachyrhaphis, ecological processes (e.g., divergent predation environments) offer additional insight into our understanding of phylogenetic diversification in this group. Copyright © 2015 Elsevier Inc. All rights reserved.

  5. Planktivory in the changing Lake Huron zooplankton community: Bythotrephes consumption exceeds that of Mysis and fish

    Science.gov (United States)

    Bunnell, D.B.; Hunter, R. Douglas; Warner, D.M.; Chriscinske, M.A.; Roseman, E.F.

    2011-01-01

    Oligotrophic lakes are generally dominated by calanoid copepods because of their competitive advantage over cladocerans at low prey densities. Planktivory also can alter zooplankton community structure. We sought to understand the role of planktivory in driving recent changes to the zooplankton community of Lake Huron, a large oligotrophic lake on the border of Canada and the United States. We tested the hypothesis that excessive predation by fish (rainbow smelt Osmerus mordax, bloater Coregonus hoyi) and invertebrates (Mysis relicta, Bythotrephes longimanus) had driven observed declines in cladoceran and cyclopoid copepod biomass between 2002 and 2007. We used a field sampling and bioenergetics modelling approach to generate estimates of daily consumption by planktivores at two 91-m depth sites in northern Lake Huron, U.S.A., for each month, May-October 2007. Daily consumption was compared to daily zooplankton production. Bythotrephes was the dominant planktivore and estimated to have eaten 78% of all zooplankton consumed. Bythotrephes consumption exceeded total zooplankton production between July and October. Mysis consumed 19% of all the zooplankton consumed and exceeded zooplankton production in October. Consumption by fish was relatively unimportant - eating only 3% of all zooplankton consumed. Because Bythotrephes was so important, we explored other consumption estimation methods that predict lower Bythotrephes consumption. Under this scenario, Mysis was the most important planktivore, and Bythotrephes consumption exceeded zooplankton production only in August. Our results provide no support for the hypothesis that excessive fish consumption directly contributed to the decline of cladocerans and cyclopoid copepods in Lake Huron. Rather, they highlight the importance of invertebrate planktivores in structuring zooplankton communities, especially for those foods webs that have both Bythotrephes and Mysis. Together, these species occupy the epi-, meta- and

  6. Climate-driven changes in functional biogeography of Arctic marine fish communities.

    Science.gov (United States)

    Frainer, André; Primicerio, Raul; Kortsch, Susanne; Aune, Magnus; Dolgov, Andrey V; Fossheim, Maria; Aschan, Michaela M

    2017-11-14

    Climate change triggers poleward shifts in species distribution leading to changes in biogeography. In the marine environment, fish respond quickly to warming, causing community-wide reorganizations, which result in profound changes in ecosystem functioning. Functional biogeography provides a framework to address how ecosystem functioning may be affected by climate change over large spatial scales. However, there are few studies on functional biogeography in the marine environment, and none in the Arctic, where climate-driven changes are most rapid and extensive. We investigated the impact of climate warming on the functional biogeography of the Barents Sea, which is characterized by a sharp zoogeographic divide separating boreal from Arctic species. Our unique dataset covered 52 fish species, 15 functional traits, and 3,660 stations sampled during the recent warming period. We found that the functional traits characterizing Arctic fish communities, mainly composed of small-sized bottom-dwelling benthivores, are being rapidly replaced by traits of incoming boreal species, particularly the larger, longer lived, and more piscivorous species. The changes in functional traits detected in the Arctic can be predicted based on the characteristics of species expected to undergo quick poleward shifts in response to warming. These are the large, generalist, motile species, such as cod and haddock. We show how functional biogeography can provide important insights into the relationship between species composition, diversity, ecosystem functioning, and environmental drivers. This represents invaluable knowledge in a period when communities and ecosystems experience rapid climate-driven changes across biogeographical regions. Copyright © 2017 the Author(s). Published by PNAS.

  7. Evolution of Wenger's concept of community of practice

    Directory of Open Access Journals (Sweden)

    Coyte Peter C

    2009-03-01

    Full Text Available Abstract Background In the experience of health professionals, it appears that interacting with peers in the workplace fosters learning and information sharing. Informal groups and networks present good opportunities for information exchange. Communities of practice (CoPs, which have been described by Wenger and others as a type of informal learning organization, have received increasing attention in the health care sector; however, the lack of uniform operating definitions of CoPs has resulted in considerable variation in the structure and function of these groups, making it difficult to evaluate their effectiveness. Objective To critique the evolution of the CoP concept as based on the germinal work by Wenger and colleagues published between 1991 and 2002. Discussion CoP was originally developed to provide a template for examining the learning that happens among practitioners in a social environment, but over the years there have been important divergences in the focus of the concept. Lave and Wenger's earliest publication (1991 centred on the interactions between novices and experts, and the process by which newcomers create a professional identity. In the 1998 book, the focus had shifted to personal growth and the trajectory of individuals' participation within a group (i.e., peripheral versus core participation. The focus then changed again in 2002 when CoP was applied as a managerial tool for improving an organization's competitiveness. Summary The different interpretations of CoP make it challenging to apply the concept or to take full advantage of the benefits that CoP groups may offer. The tension between satisfying individuals' needs for personal growth and empowerment versus an organization's bottom line is perhaps the most contentious of the issues that make CoPs difficult to cultivate. Since CoP is still an evolving concept, we recommend focusing on optimizing specific characteristics of the concept, such as support for members

  8. The effects of tertiary treated municipal wastewater on fish communities of a small river tributary in Southern Ontario, Canada

    International Nuclear Information System (INIS)

    Brown, Carolyn J.M.; Knight, Brendan W.; McMaster, Mark E.; Munkittrick, Kelly R.; Oakes, Ken D.; Tetreault, Grald R.; Servos, Mark R.

    2011-01-01

    Fish community changes associated with a tertiary treated municipal wastewater effluent outfall in the Speed River, Ontario, Canada, were evaluated at nine sites over two seasons (2008) using standardized electrofishing. Habitat evaluations were conducted to ensure that the riffle sites selected were physically similar. The fish community was dominated by several species of darters that differed in their response to the effluent outfall. There was a significant decrease in Greenside Darter (Etheostoma blennioides) but an increase in Rainbow Darter (E. caeruleum) abundance directly downstream of the outfall. Stable isotope signatures (δ 13 C and δ 15 N), which indicate shifts in energy utilization and flow, increased in Rainbow Darter downstream, but showed no change in Greenside Darter. Rainbow Darter may be exploiting a food source that is not as available at upstream sites giving them a competitive advantage over the Greenside Darter immediately downstream of the outfall. - Highlights: → Fish communities are altered by tertiary treated municipal wastewater exposure. → Relative abundance of the two dominant fish (darter) species changed downstream. → Differing stable isotope signatures in fish suggests shifting energy flow and diet. → The altered environment may allow resilient species a competitive advantage. → The system recovers quickly downstream. - Tertiary treated effluent altered fish community composition in a small receiving stream possibly as a result of altered availability of resources (diet) as indicated by stable isotopes.

  9. Fish community of the river Tiber basin (Umbria-Italy: temporal changes and possible threats to native biodiversity

    Directory of Open Access Journals (Sweden)

    Carosi A.

    2015-01-01

    Full Text Available The introduction of exotic fish species in the river Tiber basin has probably caused a serious alteration of original faunal composition. The purpose of this research was to assess the changes occurred over time in the state of the fish communities with particular reference to the reduction of local communities of endemic species. The study area comprised 68 watercourses of the Umbrian portion of the River Tiber basin; the analyses were carried out using the data of the Regional Fish Map of 1st and 2nd level and the 1st update, respectively collected during the periods between the 1990–1996, 2000–2006 and 2007–2014, in 125 sampling stations. The results show a progressive alteration of the fish communities’ structure, as confirmed by the appearance in recent times of new alien species. A total of 40 species was found, only 14 native. The qualitative change of the fish communities appear to be closely related to the longitudinal gradient of the river. The results shows that particularly in the downstream reaches, the combined action of pollution and introduction of exotic species resulted in a gradual decrease in the indigenous component of fish communities. The information collected are the indispensable premise for taking the necessary strategies for conservation of endangered species.

  10. Evolution in the block: common elements of 5S rDNA organization and evolutionary patterns in distant fish genera.

    Science.gov (United States)

    Campo, Daniel; García-Vázquez, Eva

    2012-01-01

    The 5S rDNA is organized in the genome as tandemly repeated copies of a structural unit composed of a coding sequence plus a nontranscribed spacer (NTS). The coding region is highly conserved in the evolution, whereas the NTS vary in both length and sequence. It has been proposed that 5S rRNA genes are members of a gene family that have arisen through concerted evolution. In this study, we describe the molecular organization and evolution of the 5S rDNA in the genera Lepidorhombus and Scophthalmus (Scophthalmidae) and compared it with already known 5S rDNA of the very different genera Merluccius (Merluccidae) and Salmo (Salmoninae), to identify common structural elements or patterns for understanding 5S rDNA evolution in fish. High intra- and interspecific diversity within the 5S rDNA family in all the genera can be explained by a combination of duplications, deletions, and transposition events. Sequence blocks with high similarity in all the 5S rDNA members across species were identified for the four studied genera, with evidences of intense gene conversion within noncoding regions. We propose a model to explain the evolution of the 5S rDNA, in which the evolutionary units are blocks of nucleotides rather than the entire sequences or single nucleotides. This model implies a "two-speed" evolution: slow within blocks (homogenized by recombination) and fast within the gene family (diversified by duplications and deletions).

  11. Angler-caught piscivore diets reflect fish community changes in Lake Huron

    Science.gov (United States)

    Roseman, Edward F.; Schaeffer, Jeff; Bright, Ethan; Fielder, David G.

    2014-01-01

    Examination of angler-caught piscivore stomachs revealed that Lake Trout Salvelinus namaycush, Chinook Salmon Oncorhynchus tshawytscha, and Walleyes Sander vitreus altered theirdiets in response to unprecedented declines in Lake Huron's main-basin prey fish community.Diets varied by predator species, season, and location but were nearly always dominated numerically by some combination of Alewife Alosa pseudoharengus, Rainbow Smelt Osmerus mordax, Emerald Shiner Notropis atherinoides, Round Goby Neogobius melanostomus, or terrestrial insects. Rainbow Trout Oncorhynchus mykiss (steelhead), Coho Salmon Oncorhynchus kisutch, and Atlantic Salmon Salmo salar had varied diets that reflected higher contributions of insects. Compared with an earlier (1983–1986) examination of angler-caught predator fishes from Lake Huron, the contemporary results showed an increase in consumption of nontraditional prey (including conspecifics), use of smaller prey, and an increase in insects in the diet, suggesting that piscivores were faced with chronic prey limitation during this study. The management of all piscivores in Lake Huron will likely require consideration of the pervasive effects of changes in food webs, especially if prey fish remain at low levels.

  12. From fish to modern humans – comparative anatomy, homologies and evolution of the pectoral and forelimb musculature

    Science.gov (United States)

    Diogo, R; Abdala, V; Aziz, M A; Lonergan, N; Wood, B A

    2009-01-01

    In a recent study Diogo & Abdala [(2007) JMorphol268, 504–517] reported the results of the first part of a research project on the comparative anatomy, homologies and evolution of the pectoral muscles of osteichthyans (bony fish and tetrapods). That report mainly focused on actinopterygian fish but also compared these fish with certain non-mammalian sarcopterygians. This study, which reports the second part of the research project, focuses mainly on sarcopterygians and particularly on how the pectoral and forelimb muscles have evolved during the transitions from sarcopterygian fish and non-mammalian tetrapods to monotreme and therian mammals and humans. The data obtained by our own dissections of all the pectoral and forelimb muscles of representative members of groups as diverse as sarcopterygian fish, amphibians, reptiles, monotremes and therian mammals such as rodents, tree-shrews, colugos and primates, including humans, are compared with the information available in the literature. Our observations and comparisons clearly stress that, with regard to the number of pectoral and forelimb muscles, the most striking transition within sarcopterygian evolutionary history was that leading to the origin of tetrapods. Whereas extant sarcopterygian fish have an abductor and adductor of the fin and a largely undifferentiated hypaxial and epaxial musculature, extant salamanders such as Ambystoma have more than 40 pectoral and forelimb muscles. There is no clear increase in the number of pectoral and forelimb muscles within the evolutionary transition that led to the origin of mammals and surely not to that leading to the origin of primates and humans. PMID:19438764

  13. Evolution of the Sensor Fish Device for Measuring Physical Conditions in Severe Hydraulic Environments

    Energy Technology Data Exchange (ETDEWEB)

    Carlson, Thomas J.; Duncan, Joanne P.

    2003-02-28

    To assist in deriving biological specifications for design of turbine rehabilitation measures, new ''fish-friendly'' turbines, and spillway designs and operations, scientists at the Pacific Northwest National Laboratory (PNNL) have developed and tested an autonomous multi-sensor device called a Sensor Fish that can acquire pressure and tri-axial linear acceleration data during passage through severe hydraulic conditions. The purpose of the Sensor Fish is to characterize physical conditions fish experience during passage through hydro turbines, spill stilling basins, high-discharge outfalls, and other dam passage routes. The Sensor Fish was developed with the support of the U.S. Department of Energy's Advanced Hydropower Turbine System program. Field tests of the Sensor Fish at Rock Island, McNary, The Dalles, Bonneville, and Wanapum dams on the Columbia River and the Prosser Irrigation District on the Yakima River have shown that the device can withstand the severe environments of turbine, spill, and fish bypass passage and provide useful environmental data that can ultimately aid in the design and operation of new and existing turbines, spill, and dam fish bypass facilities.

  14. Heterogeneity of the HIV epidemic in agrarian, trading, and fishing communities in Rakai, Uganda: an observational epidemiological study.

    Science.gov (United States)

    Chang, Larry W; Grabowski, Mary K; Ssekubugu, Robert; Nalugoda, Fred; Kigozi, Godfrey; Nantume, Betty; Lessler, Justin; Moore, Sean M; Quinn, Thomas C; Reynolds, Steven J; Gray, Ronald H; Serwadda, David; Wawer, Maria J

    2016-08-01

    Understanding the extent to which HIV burden differs across communities and the drivers of local disparities is crucial for an effective and targeted HIV response. We assessed community-level variations in HIV prevalence, risk factors, and treatment and prevention service uptake in Rakai, Uganda. The Rakai Community Cohort Study (RCCS) is an open, population-based cohort of people aged 15-49 years in 40 communities. Participants are HIV tested and interviewed to obtain sociodemographic, behavioural, and health information. RCCS data from Aug 10, 2011, to May 30, 2013, were used to classify communities as agrarian (n=27), trading (n=9), or lakeside fishing sites (n=4). We mapped HIV prevalence with Bayesian methods, and characterised variability across and within community classifications. We also assessed differences in HIV risk factors and uptake of antiretroviral therapy and male circumcision between community types. 17 119 individuals were included, 9215 (54%) of whom were female. 9931 participants resided in agrarian, 3318 in trading, and 3870 in fishing communities. Median HIV prevalence was higher in fishing communities (42%, range 38-43) than in trading (17%, 11-21) and agrarian communities (14%, 9-26). Antiretroviral therapy use was significantly lower in both men and women in fishing communities than in trading (age-adjusted prevalence risk ratio in men 0·64, 95% CI 0·44-0·97; women 0·53, 0·42-0·66) and agrarian communities (men 0·55, 0·42-0·72; women 0·65, 0·54-0·79), as was circumcision coverage among men (vs trading 0·48, 0·42-0·55; vs agrarian 0·64, 0·56-0·72). Self-reported risk behaviours were significantly higher in men than in women and in fishing communities than in other community types. Substantial heterogeneity in HIV prevalence, risk factors, and service uptake in Rakai, Uganda, emphasises the need for local surveillance and the design of targeted HIV responses. High HIV burden, risk behaviours, and low use of combination

  15. Influence of mesoscale features on micronekton and large pelagic fish communities in the Mozambique Channel

    Science.gov (United States)

    Potier, Michel; Bach, Pascal; Ménard, Frédéric; Marsac, Francis

    2014-02-01

    We investigated the diversity and distribution of two communities, micronekton organisms and large predatory fishes, sampled in mesoscale features of the Mozambique Channel from 2003 to 2009, by combining mid-water trawls, stomach contents of fish predators and instrumented longline fishing surveys. The highest species richness for assemblages was found in divergences and fronts rather than in the core of eddies. Despite an unbalanced scheme, diversity indices did not differ significantly between cyclonic and anticyclonic eddies, divergences and fronts. We found that eddies and associated physical cues did not substantially affect the distribution of micronektonic species which are mainly driven by the diel vertical migration pattern. Top predators exhibited a more complex response. Swordfish (Xiphias gladius) associated better with mesoscale features than tunas, with a clear preference for divergences which is consistent with the diel vertical migrations and occurrence of its main prey, the flying squids Sthenoteuthis oualaniensis (Ommastrephidae). On the other hand, the probability of presence of yellowfin tuna was not tied to any specific eddy structure. However, the highest values of positive yellowfin CPUEs were associated with low horizontal gradients of sea-level anomalies. We also showed a non-linear response of positive yellowfin CPUEs with respect to the depth of the minimal oxygen content. The larger the distance between the hooks and the minimal oxygen layer, towards the surface or at greater depths, the higher the CPUE, highlighting that yellowfin congregated in well-oxygenated waters. Micronekton sampled by mid-water trawls and stomach contents exhibited different species composition. The highly mobile organisms were not caught by trawling whereas they remain accessible to predators. The combination of stomach contents and mid-water trawls undoubtedly improved our understanding of the micronekton assemblage distribution. Our results provide some

  16. Fish communities of the Wilderness Lakes System in the southern Cape, South Africa

    Directory of Open Access Journals (Sweden)

    Alexis A. Olds

    2016-08-01

    Full Text Available The Wilderness Lakes System, a temporarily open and closed estuary with three associated lakes situated in the southern Cape region of South Africa, was sampled using a range of sampling gears to assess the fish community. A total of 25 species were sampled throughout the system, with the highest diversity in the Touw Estuary (23 species and the lowest in Langvlei (11 species. Estuary-associated marine species (13 species dominated species richness with smaller proportions of estuarine resident (7 species, freshwater (3 species and catadromous species (2 species. Estuarine resident species dominated the catch numerically. The size–class distribution of euryhaline marine species indicated that upon entering the Touw Estuary as juveniles, the fish move up the system towards Rondevlei where they appear to remain. Three freshwater species were recorded in the system, all of which are alien to the Wilderness Lakes System. Decreasing salinity in the upper lakes appears to be a driving factor in the distribution and increasing abundance of the freshwater fishes. Sampling followed a drought, with the system experiencing substantially increased levels of mouth closure compared to a similar study conducted in the 1980s. The timing of mouth opening and the degree of connectivity between the lakes influence the nursery function of the system as a whole. Management actions need to focus on improving ecological functioning of this system, in particular how mouth opening is managed, to facilitate nursery function and limit the establishment of invasive species. Conservation implications: Key management actions are required to improve fish recruitment potential into and within the system. These include maintenance of adequate marine inflow through adherence to artificial mouth breaching protocols and improving connectivity between the lakes through sediment removal from localised deposition points within the connecting channels.

  17. How HIV diagnosis and disclosure affect sexual behavior and relationships in Ugandan fishing communities.

    Science.gov (United States)

    McArthur, Moriah; Birdthistle, Isolde; Seeley, Janet; Mpendo, Juliet; Asiki, Gershim

    2013-08-01

    In this article we examine how members of fishing communities on the shores of Lake Victoria in Uganda respond to HIV diagnosis in terms of disclosure to sexual partners. We then explore the subsequent changes in sexual behavior and relationships. To access this information, we collected life history data from 78 HIV-positive individuals in five fishing communities. We found that the strength of the sexual relationships shaped how and why individuals disclosed to partners, and that these relationships tended to be stronger when partners shared familial responsibility. Those who perceived their current sexual partnership to be weak sought to conceal their status by maintaining prediagnosis patterns of sexual behavior. The majority of the study's participants rarely changed their sexual behavior following HIV diagnosis, regardless of their relationship's strength. These findings elucidate barriers to disclosure and behavior change, and suggest that a life-course approach might enhance individual-level counseling so that counselors can provide tailored support to individuals regarding disclosure decisions and outcomes.

  18. Consumption dynamics of the adult piscivorous fish community in Spirit Lake, Iowa

    Science.gov (United States)

    Liao, H.; Pierce, C.L.; Larscheid, J.G.

    2004-01-01

    At Spirit Lake, one of Iowa's most important fisheries, walleye Sander vitreus (formerly Stizostedion vitreum) is one of the most popular species with anglers. Despite a century of walleye stocking and management in Spirit Lake, walleye growth rate, size structure, and angler harvest continue to decline. Our purpose was to determine the magnitude and dynamics of walleye population consumption relative to those of other piscivorous species in Spirit Lake, which would allow managers to judge the feasibility of increasing the abundance, growth rate, and size structure of the walleye population. We quantified food consumption by the adult piscivorous fish community in Spirit Lake over a 3-year period. Data on population dynamics, diet, energy density, and water temperature from 1995 to 1997 were used in bioenergetics models to estimate total consumption by walleye, yellow perch Perca flavescens, smallmouth bass Micropterus dolomieu, largemouth bass Micropterus salmoides, black crappie Pomoxis nigromaculatus, and northern pike Esox lucius. Estimated annual consumption by the piscivorous community varied roughly fourfold, ranging from 154,752 kg in 1995 to 662,776 kg in 1997. Walleyes dominated total consumption, accounting for 68, 73, and 90% (1995-1997, respectively) of total food consumption. Walleyes were also the dominant consumers of fish, accounting for 76, 86, and 97% of piscivorous consumption; yellow perch followed, accounting for 16% of piscivorous consumption in 1995 and 12% in 1996. Yellow perch were the predominant fish prey species in all 3 years, accounting for 68, 52, and 36% of the total prey consumed. Natural reproduction is weak, so high walleye densities are maintained by intensive stocking. Walleye stocking drives piscivorous consumption in Spirit Lake, and yearly variation in the cannibalism of stocked walleye fry may be an important determinant of walleye year-class strength and angler success. Reducing walleye stocking intensity, varying stocking

  19. Composition of Fish Communities in a European Macrotidal Salt Marsh (the Mont Saint-Michel Bay, France)

    Science.gov (United States)

    Laffaille, P.; Feunteun, E.; Lefeuvre, J.-C.

    2000-10-01

    At least 100 fish species are known to be present in the intertidal areas (estuaries, mudflats and salt marshes) of Mont Saint-Michel Bay. These and other comparable shallow marine coastal waters, such as estuaries and lagoons, play a nursery role for many fish species. However, in Europe little attention has been paid to the value of tidal salt marshes for fishes. Between March 1996 and April 1999, 120 tides were sampled in a tidal creek. A total of 31 species were caught. This community was largely dominated by mullets ( Liza ramada represent 87% of the total biomass) and sand gobies ( Pomatoschistus minutus and P. lozanoi represent 82% of the total numbers). These species and also Gasterosteus aculeatus , Syngnathus rostellatus, Dicentrarchus labrax, Mugil spp., Liza aurata and Sprattus sprattus were the most frequent species (>50% of monthly frequency of occurrence). In Europe, salt marshes and their creeks are flooded only during high spring tides. So, fishes only invade this environment during short immersion periods, and no species can be considered as marsh resident. But, the salt marsh was colonized by fish every time the tide reached the creek, and during the short time of flood, dominant fishes fed actively and exploited the high productivity. Nevertheless, this study shows that there is little interannual variation in the fish community and there are three ' seasons ' in the fish fauna of the marsh. Marine straggler and marine estuarine dependent species colonize marshes between spring (recruitment period in the bay) and autumn before returning into deeper adjacent waters. Estuarine fishes are present all year round with maximum abundances in the end of summer. The presence of fishes confirms that this kind of wetland plays an important trophic and nursery role for these species. Differences in densities and stages distribution of these species into Mont Saint-Michel systems (tidal mudflats, estuaries and tidal salt marshes) can reduce the trophic

  20. Present status and approaches for the sustainable development of community based fish culture in seasonal floodplains of Bangladesh.

    Science.gov (United States)

    Rahman, M F; Jalal, K C A; Jahan, Nasrin; Kamaruzzaman, B Y; Ara, R; Arshad, A

    2012-06-15

    Coordination among the different stakeholders at policy planning, implementation and target beneficiary level, particularly among the agencies responsible for development and management of water resources, agriculture and fisheries, is essential for overall sustainable development. Stocking of larger fingerlings at suitable stocking densities of endemic (rohu, catla, mrigal) and exotic (silver carp, bighead carp, common carp/mirror carp) species should be stocked at varying proportion. Floodplain fish production depends only on the natural fertility of the water bodies. Technological interventions should include the installation of low cost bamboo fencing at water inlet and outlet points and setting of ring culverts for maintaining suitable levels of water for fish culture without hampering the production of rice and other crops in the intervention areas, selective stocking with native and exotic carps, restricted fishing for certain period of time and guarding. It is expected to exert positive influences in enhancing the standing crop and biodiversity of non-stocked species of fishes in the intervention seasonal floodplain. Entry of fish larvae, hatchlings and young fry of wild non-stocked fishes into the seasonal floodplains because of large fence spacing (approximately 1.0 cm), could restrict fishing for certain period, undisturbed habitat and guarding could contribute to higher productivity and enhancement of fish biodiversity in the seasonal floodplains. Proper motivation and effective cooperation of the beneficiaries are extremely important to culture fish in the seasonal floodplains under community based management system. Institutional support and constant vigilance from the Department of Fisheries (DoF) and local administrations are indispensable to ensure the sustainability of fish culture initiatives in the seasonal floodplains. Active participation and involvement of the local community people in all stages of fish culture operation beginning from

  1. Environmental Determinants Influencing Fish Community Structure and Diversity in Two Distinct Seasons among Wetlands of Northern Region (Ghana

    Directory of Open Access Journals (Sweden)

    Collins Ayine Nsor

    2016-01-01

    Full Text Available Fish community structure was assessed in six wetlands using cast nets, to correlate with environmental variables with diversity and distribution patterns, from 2010 to 2012. A total of 2,239 individuals belonging to 44 species and 1,938 individuals belonging to 40 species were sampled in the dry and wet seasons. Mochokid and Mormyrid families dominated fish community and constituted 14.8%, respectively, followed by Alestids (12.9% and Chlariids (11.1%. Rarer taxons were centropomids, channids, malapteruds, and oesteoglossids and represented 1.9%, respectively. Overall, CPUE per net did not vary significantly (Tukey HSD test, p=0.27 in the dry and wet seasons. Wuntori marsh consistently showed dominance in mean monthly CPUE per net (dry = 115±4.5; wet = 107±7.7 seasons, while Bunglung constructed wetland was the least recorded (dry = 56.5±6.2; wet = 58.3±4.1 seasons. Fish diversity and richness differed significantly (F=0.11, p=0.03 among seasons. Environmental disturbances were season-specific and did not differ significantly (F=0.16, df=14, p=0.97 among sites. A DCA ordination explained 69% variability in fish distribution patterns, while PCA showed that 81.8% of nitrate-nitrogen, phosphate, and grazing intensity on axis 1 and conductivity, temperature, and turbidity on axis 2 influenced fish community structure. Wetland conservation must be promoted to sustain fish abundance and overall ecosystem stability.

  2. Venom evolution widespread in fishes: a phylogenetic road map for the bioprospecting of piscine venoms.

    Science.gov (United States)

    Smith, William Leo; Wheeler, Ward C

    2006-01-01

    Knowledge of evolutionary relationships or phylogeny allows for effective predictions about the unstudied characteristics of species. These include the presence and biological activity of an organism's venoms. To date, most venom bioprospecting has focused on snakes, resulting in six stroke and cancer treatment drugs that are nearing U.S. Food and Drug Administration review. Fishes, however, with thousands of venoms, represent an untapped resource of natural products. The first step involved in the efficient bioprospecting of these compounds is a phylogeny of venomous fishes. Here, we show the results of such an analysis and provide the first explicit suborder-level phylogeny for spiny-rayed fishes. The results, based on approximately 1.1 million aligned base pairs, suggest that, in contrast to previous estimates of 200 venomous fishes, >1,200 fishes in 12 clades should be presumed venomous. This assertion was corroborated by a detailed anatomical study examining potentially venomous structures in >100 species. The results of these studies not only alter our view of the diversity of venomous fishes, now representing >50% of venomous vertebrates, but also provide the predictive phylogeny or "road map" for the efficient search for potential pharmacological agents or physiological tools from the unexplored fish venoms.

  3. Evolution of the sensor fish device for measuring physical conditions in sever hydraulic environments

    Energy Technology Data Exchange (ETDEWEB)

    Carlson, Thomas J. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Duncan, J. P. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2003-03-01

    To assist in deriving biological specifications for design of turbine rehabilitation measures, new “fish-friendly” turbines, and spillway designs and operations, Pacific Northwest National Laboratory (PNNL) scientists have developed and tested an autonomous multi-sensor device called a Sensor Fish that can acquire pressure and tri-axial linear acceleration data during passage through severe hydraulic conditions. The purpose of the Sensor Fish is to characterize physical conditions fish experience during passage through hydro turbines, spill stilling basins, high-discharge outfalls, and other dam passage routes. This report discusses the development and field tests of the Sensor Fish at Rock Island, McNary, The Dalles, Bonneville, and Wanapum dams on the Columbia River and the Prosser Irrigation District on the Yakima River, which have shown that the device can withstand the severe environments of turbine, spill, and fish bypass passage and provide useful environmental data that can ultimately aid in the design and operation of new and existing turbines, spill, and dam fish bypass facilities.

  4. Evolution in plant populations as a driver of ecological changes in arthropod communities.

    Science.gov (United States)

    Johnson, Marc T J; Vellend, Mark; Stinchcombe, John R

    2009-06-12

    Heritable variation in traits can have wide-ranging impacts on species interactions, but the effects that ongoing evolution has on the temporal ecological dynamics of communities are not well understood. Here, we identify three conditions that, if experimentally satisfied, support the hypothesis that evolution by natural selection can drive ecological changes in communities. These conditions are: (i) a focal population exhibits genetic variation in a trait(s), (ii) there is measurable directional selection on the trait(s), and (iii) the trait(s) under selection affects variation in a community variable(s). When these conditions are met, we expect evolution by natural selection to cause ecological changes in the community. We tested these conditions in a field experiment examining the interactions between a native plant (Oenothera biennis) and its associated arthropod community (more than 90 spp.). Oenothera biennis exhibited genetic variation in several plant traits and there was directional selection on plant biomass, life-history strategy (annual versus biennial reproduction) and herbivore resistance. Genetically based variation in biomass and life-history strategy consistently affected the abundance of common arthropod species, total arthropod abundance and arthropod species richness. Using two modelling approaches, we show that evolution by natural selection in large O. biennis populations is predicted to cause changes in the abundance of individual arthropod species, increases in the total abundance of arthropods and a decline in the number of arthropod species. In small O. biennis populations, genetic drift is predicted to swamp out the effects of selection, making the evolution of plant populations unpredictable. In short, evolution by natural selection can play an important role in affecting the dynamics of communities, but these effects depend on several ecological factors. The framework presented here is general and can be applied to other systems to

  5. Evolution in plant populations as a driver of ecological changes in arthropod communities

    Science.gov (United States)

    Johnson, Marc T.J.; Vellend, Mark; Stinchcombe, John R.

    2009-01-01

    Heritable variation in traits can have wide-ranging impacts on species interactions, but the effects that ongoing evolution has on the temporal ecological dynamics of communities are not well understood. Here, we identify three conditions that, if experimentally satisfied, support the hypothesis that evolution by natural selection can drive ecological changes in communities. These conditions are: (i) a focal population exhibits genetic variation in a trait(s), (ii) there is measurable directional selection on the trait(s), and (iii) the trait(s) under selection affects variation in a community variable(s). When these conditions are met, we expect evolution by natural selection to cause ecological changes in the community. We tested these conditions in a field experiment examining the interactions between a native plant (Oenothera biennis) and its associated arthropod community (more than 90 spp.). Oenothera biennis exhibited genetic variation in several plant traits and there was directional selection on plant biomass, life-history strategy (annual versus biennial reproduction) and herbivore resistance. Genetically based variation in biomass and life-history strategy consistently affected the abundance of common arthropod species, total arthropod abundance and arthropod species richness. Using two modelling approaches, we show that evolution by natural selection in large O. biennis populations is predicted to cause changes in the abundance of individual arthropod species, increases in the total abundance of arthropods and a decline in the number of arthropod species. In small O. biennis populations, genetic drift is predicted to swamp out the effects of selection, making the evolution of plant populations unpredictable. In short, evolution by natural selection can play an important role in affecting the dynamics of communities, but these effects depend on several ecological factors. The framework presented here is general and can be applied to other systems to

  6. Host specificity and the structure of helminth parasite communities of fishes in a Neotropical river in Mexico

    Science.gov (United States)

    Salgado-Maldonado, Guillermo; Novelo-Turcotte, María Teresa; Caspeta-Mandujano, Juan Manuel; Vazquez-Hurtado, Gabriela; Quiroz-Martínez, Benjamin; Mercado-Silva, Norman; Favila, Mario

    2016-01-01

    In a tropical locality of Río La Antigua, Veracruz, Mexico, 11 fish species, represented by 244 individual fish from six freshwater fish families living sympatrically and synchronically, were examined for helminth parasites. A total of 36 taxa of helminths were recorded, 24 autogenic and 12 allogenic forms, including 6 monogeneans, 14 trematodes, 1 cestode, and 15 nematodes. Most helminth taxa were recovered for 10/11 of the component communities we analyzed. The results contribute empirical evidence that host specificity is an important force in the development of helminth communities of freshwater fishes. Each fish family has their own set of parasites, host species belonging to the same taxon share parasite species. High component community similarity among related host species was recorded, demonstrated by high prevalence and abundance, as well as dominance, of autogenic specialist species in each component community. Most autogenic helminth species are numerically and reproductively successful in relatively few host species. Autogenic helminths common in one host species are not common in others. Our findings give empirical support to the idea that low levels of sharing of parasites favor animal coexistence and high species richness, because large phylogenetic differences allow potentially competing animals to consume the same resources without being sensitive of another’s parasites. PMID:28004635

  7. Biodiversity and spatial patterns of benthic habitat and associated demersal fish communities at two tropical submerged reef ecosystems

    Science.gov (United States)

    Abdul Wahab, Muhammad Azmi; Radford, Ben; Cappo, Mike; Colquhoun, Jamie; Stowar, Marcus; Depczynski, Martial; Miller, Karen; Heyward, Andrew

    2018-06-01

    Submerged reef ecosystems can be very diverse and may serve as important refugia for shallow-water conspecifics. This study quantified the benthic and fish communities of two proximate, predominantly mesophotic coral ecosystems (MCEs), Glomar Shoal and Rankin Bank, which are geographically isolated from other similar features in the region. Glomar Shoal is identified as a key ecological feature (KEF) in the North West Marine Region of Australia. Multibeam surveys were performed to characterise the seafloor and to derive secondary environmental variables, used to explain patterns in benthic and fish communities. Towed video surveys quantified benthic cover, and stereo baited remote underwater stations were used to survey fish abundance and diversity. Surveys were completed in depths of 20-115 m. The two MCEs exhibited distinct communities; Rankin Bank consistently had higher cover (up to 30×) of benthic taxa across depths, and fish communities that were twice as abundant and 1.5× more diverse than Glomar Shoal. The location of the MCEs, depth and rugosity were most influential in structuring benthic communities. Phototrophic taxa, specifically macroalgae and hard corals, had up to 22 × higher cover at Rankin Bank than at Glomar Shoal and were dominant to 80 m (compared to 60 m at Glomar Shoal), presumably due to greater light penetration (lower turbidity) and lower sand cover at greater depths. The 20% coral cover at Rankin Bank was comparable to that reported for shallow reefs. The cover of sand, hard corals and sponges influenced fish communities, with higher abundance and diversity of fish associated with shallow hard coral habitats. This study demonstrated that the two MCEs were unique within the local context, and when coupled with their geographical isolation and biodiversity, presents compelling support for the additional recognition of Rankin Bank as a KEF.

  8. Rapidly shifting baselines in Yangtze fishing communities and local memory of extinct species.

    Science.gov (United States)

    Turvey, Samuel T; Barrett, Leigh A; Yujiang, Hao; Lei, Zhang; Xinqiao, Zhang; Xianyan, Wang; Yadong, Huang; Kaiya, Zhou; Hart, Tom; Ding, Wang

    2010-06-01

    Local ecological knowledge can provide a unique source of data for conservation, especially in efforts to investigate the status of rare or possibly extinct species, but it is unlikely to remain constant over time. Loss of perspective about past ecological conditions caused by lack of communication between generations may create "shifting baseline syndrome," in which younger generations are less aware of local species diversity or abundance in the recent past. This phenomenon has been widely discussed, but has rarely been examined quantitatively. We present new evidence of shifting baselines in local perception of regional species declines and on the duration of "community memory" of extinct species on the basis of extensive interviews with fishers in communities across the middle-lower Yangtze basin. Many Yangtze species have experienced major declines in recent decades, and the Yangtze River dolphin or baiji (Lipotes vexillifer) and Yangtze paddlefish (Psephurus gladius) may have become extinct during the 21(st) century. Although informants across all age classes were strongly aware of the Yangtze ecosystem's escalating resource depletion and environmental degradation, older informants were more likely to recognize declines in two commercially important fish species, Reeves' shad (Tenualosa reevesii) and Yangtze pufferfish (Takifugu fasciatus), and to have encountered baiji and paddlefish in the past. Age was also a strong predictor of whether informants had even heard of baiji or paddlefish, with younger informants being substantially less likely to recognize either species. A marked decrease in local knowledge about the Yangtze freshwater megafauna matched the time of major population declines of these species from the 1970s onwards, and paddlefish were already unknown to over 70% of all informants below the age of 40 and to those who first started fishing after 1995. This rapid rate of cultural baseline shift suggests that once even megafaunal species cease to

  9. Fish-mediated changes in bacterioplankton community composition: an in situ mesocosm experiment

    Science.gov (United States)

    Luo, Congqiang; Yi, Chunlong; Ni, Leyi; Guo, Longgen

    2017-06-01

    We characterized variations in bacterioplankton community composition (BCC) in mesocosms subject to three different treatments. Two groups contained fish (group one: Cyprinus carpio; group two: Hypophthalmichthys molitrix); and group three, the untreated mesocosm, was the control. Samples were taken seven times over a 49-day period, and BCC was analyzed by PCR-denaturing gradient gel electrophoresis (DGGE) and real-time quantitative PCR (qPCR). Results revealed that introduction of C. carpio and H. molitrix had a remarkable impact on the composition of bacterioplankton communities, and the BCC was significantly different between each treatment. Sequencing of DGGE bands revealed that the bacterioplankton community in the different treatment groups was consistent at a taxonomic level, but differed in its abundance. H. molitrix promoted the richness of Alphaproteobacteria and Actinobacteria, while more bands affiliated to Cyanobacteria were detected inC. carpio mesocosms. The redundancy analysis (RDA) result demonstrated that the BCC was closely related to the bottom-up (total phosphorus, chlorophyll a, phytoplankton biomass) and top-down forces (biomass of copepods and cladocera) in C. carpio and control mesocosms, respectively. We found no evidence for top-down regulation of BCC by zooplankton in H. molitrix mesocosms, while grazing by protozoa (heterotrophic nanoflagellates, ciliates) became the major way to regulate BCC. Total bacterioplankton abundances were significantly higher in C. carpio mesocosms because of high nutrient concentration and suspended solids. Our study provided insights into the relationship between fish and bacterioplankton at species level, leading to a deep understanding of the function of the microbial loop and the aquatic ecosystem.

  10. Fish-mediated changes in bacterioplankton community composition: an in situ mesocosm experiment

    Science.gov (United States)

    Luo, Congqiang; Yi, Chunlong; Ni, Leyi; Guo, Longgen

    2018-03-01

    We characterized variations in bacterioplankton community composition (BCC) in mesocosms subject to three different treatments. Two groups contained fish (group one: Cyprinus carpio; group two: Hypophthalmichthys molitrix); and group three, the untreated mesocosm, was the control. Samples were taken seven times over a 49-d period, and BCC was analyzed by PCR-denaturing gradient gel electrophoresis (DGGE) and real-time quantitative PCR (qPCR). Results revealed that introduction of C. carpio and H. molitrix had a remarkable impact on the composition of bacterioplankton communities, and the BCC was significantly different between each treatment. Sequencing of DGGE bands revealed that the bacterioplankton community in the different treatment groups was consistent at a taxonomic level, but differed in its abundance. H. molitrix promoted the richness of Alphaproteobacteria and Actinobacteria, while more bands affiliated to Cyanobacteria were detected in C. carpio mesocosms. The redundancy analysis (RDA) result demonstrated that the BCC was closely related to the bottom-up (total phosphorus, chlorophyll a, phytoplankton biomass) and top-down forces (biomass of copepods and cladocera) in C. carpio and control mesocosms, respectively. We found no evidence for top-down regulation of BCC by zooplankton in H. molitrix mesocosms, while grazing by protozoa (heterotrophic nanoflagellates, ciliates) became the major way to regulate BCC. Total bacterioplankton abundances were significantly higher in C. carpio mesocosms because of high nutrient concentration and suspended solids. Our study provided insights into the relationship between fish and bacterioplankton at species level, leading to a deep understanding of the function of the microbial loop and the aquatic ecosystem.

  11. Individual-based analyses reveal limited functional overlap in a coral reef fish community.

    Science.gov (United States)

    Brandl, Simon J; Bellwood, David R

    2014-05-01

    Detailed knowledge of a species' functional niche is crucial for the study of ecological communities and processes. The extent of niche overlap, functional redundancy and functional complementarity is of particular importance if we are to understand ecosystem processes and their vulnerability to disturbances. Coral reefs are among the most threatened marine systems, and anthropogenic activity is changing the functional composition of reefs. The loss of herbivorous fishes is particularly concerning as the removal of algae is crucial for the growth and survival of corals. Yet, the foraging patterns of the various herbivorous fish species are poorly understood. Using a multidimensional framework, we present novel individual-based analyses of species' realized functional niches, which we apply to a herbivorous coral reef fish community. In calculating niche volumes for 21 species, based on their microhabitat utilization patterns during foraging, and computing functional overlaps, we provide a measurement of functional redundancy or complementarity. Complementarity is the inverse of redundancy and is defined as less than 50% overlap in niche volumes. The analyses reveal extensive complementarity with an average functional overlap of just 15.2%. Furthermore, the analyses divide herbivorous reef fishes into two broad groups. The first group (predominantly surgeonfishes and parrotfishes) comprises species feeding on exposed surfaces and predominantly open reef matrix or sandy substrata, resulting in small niche volumes and extensive complementarity. In contrast, the second group consists of species (predominantly rabbitfishes) that feed over a wider range of microhabitats, penetrating the reef matrix to exploit concealed surfaces of various substratum types. These species show high variation among individuals, leading to large niche volumes, more overlap and less complementarity. These results may have crucial consequences for our understanding of herbivorous processes on

  12. Variation in fish community structure, richness and diversity of 56 Danish lakes with contrasting depth and trophic state: Does the method matter?

    DEFF Research Database (Denmark)

    Menezes, Rosemberg

    2011-01-01

    The understanding of the variables that determine the structure and composition of fish communities is crucial for developing fish monitoring programs for lakes. Although electrofishing has long been recognized as an efficient method for quantitative investigations of fish populations, it has typ...... are not well caught in the gill nets such as eel, common carp (Carassius carassius) and stickleback (Gasterosteus aculeatus)....

  13. Coding early naturalists' accounts into long-term fish community changes in the Adriatic Sea (1800-2000.

    Directory of Open Access Journals (Sweden)

    Tomaso Fortibuoni

    Full Text Available The understanding of fish communities' changes over the past centuries has important implications for conservation policy and marine resource management. However, reconstructing these changes is difficult because information on marine communities before the second half of the 20(th century is, in most cases, anecdotal and merely qualitative. Therefore, historical qualitative records and modern quantitative data are not directly comparable, and their integration for long-term analyses is not straightforward. We developed a methodology that allows the coding of qualitative information provided by early naturalists into semi-quantitative information through an intercalibration with landing proportions. This approach allowed us to reconstruct and quantitatively analyze a 200-year-long time series of fish community structure indicators in the Northern Adriatic Sea (Mediterranean Sea. Our analysis provides evidence of long-term changes in fish community structure, including the decline of Chondrichthyes, large-sized and late-maturing species. This work highlights the importance of broadening the time-frame through which we look at marine ecosystem changes and provides a methodology to exploit, in a quantitative framework, historical qualitative sources. To the purpose, naturalists' eyewitness accounts proved to be useful for extending the analysis on fish community back in the past, well before the onset of field-based monitoring programs.

  14. Exploring the larval fish community of the central Red Sea with an integrated morphological and molecular approach

    KAUST Repository

    Isari, Stamatina

    2017-08-03

    An important aspect of population dynamics for coral reef fishes is the input of new individuals from the pelagic larval pool. However, the high biodiversity and the difficulty of identifying larvae of closely related species represent obstacles to more fully understanding these populations. In this study, we combined morphology and genetic barcoding (Cytochrome Oxidase I gene) to characterize the seasonal patterns of the larval fish community at two sites in close proximity to coral reefs in the central-north Red Sea: one shallower inshore location (50 m depth) and a nearby site located in deeper and more offshore waters (~ 500 m depth). Fish larvae were collected using oblique tows of a 60 cm-bongo net (500 μm mesh size) every month for one year (2013). During the warmer period of the year (June-November), the larval fish stock was comparable between sampling sites. However, during the colder months, abundances were higher in the inshore than in the offshore waters. Taxonomic composition and temporal variation of community structure differed notably between sites, potentially reflecting habitat differences, reproductive patterns of adults, and/or advective processes in the area. Eleven out of a total of 62 recorded families comprised 69–94% of the fish larval community, depending on sampling site and month. Richness of taxa was notably higher in the inshore station compared to the offshore, particularly during the colder period of the year and especially for the gobiids and apogonids. Two mesopelagic taxa (Vinciguerria sp. and Benthosema spp.) comprised an important component of the larval community at the deeper site with only a small and sporadic occurrence in the shallower inshore waters. Our data provide an important baseline reference for the larval fish communities of the central Red Sea, representing the first such study from Saudi Arabian waters.

  15. Environmental changes on freshwater fish communities in South America in the last five decades: a case study in northeast Argentina.

    Directory of Open Access Journals (Sweden)

    Alejandra Volpedo

    2017-01-01

    Full Text Available Environmental changes together with other stressors, such as habitat destruction, may cause widespread extinctions, decrease in biodiversity and disrupt natural communities, resulting in novel species assemblages. South America has a large diversity of freshwater fishes with complex evolutionary histories, mainly due to the presence of a wide variety of aquatic environments. Argentina has experienced an increase in rainfall in the last five decades leading to important climatic and hydrological changes. These changes caused the displacement of the isohyets towards the west. This study reports changes in the composition of freshwater fishes in northeast Argentina during the last five decades, and investigated a causal relationship between the variation in fish assemblages and climate change. The changes in the distribution and composition of fish communities between 1962 and 2010 were analyzed in 22 stations. These stations were agrouped in relation to the ichthyogeographic provinces: Great Rivers province (GRp and Pampean province (Pp. The correlation between rainfall in relation to the number total species from each of the studied provinces showed a significant positive correlation in Pp and not correlation in GRp. The annual mean river discharge and the number of total species from each ecoregion showed a significant positive correlation in GRp, and not correlation in Pp. The results of this study strongly suggest that the rainfall variations and river discharges observed in northeast Argentina induced changes in the composition of fish assemblages that lead to the redistribution of fish species among ichthyogeographic provinces.

  16. Alcohol consumption and risky sexual behaviour in the fishing communities: evidence from two fish landing sites on Lake Victoria in Uganda.

    Science.gov (United States)

    Tumwesigye, Nazarius M; Atuyambe, Lynn; Wanyenze, Rhoda K; Kibira, Simon Ps; Li, Qing; Wabwire-Mangen, Fred; Wagner, Glenn

    2012-12-11

    The fishing communities are among population groups that are most at risk of HIV infection, with some studies putting the HIV prevalence at 5 to 10 times higher than in the general population. Alcohol consumption has been identified as one of the major drivers of the sexual risk behaviour in the fishing communities. This paper investigates the relationship between alcohol consumption patterns and risky behaviour in two fishing communities on Lake Victoria. Face-to-face interviews were conducted among 303 men and 172 women at the fish landing sites; categorised into fishermen, traders of fish or fish products and other merchandise, and service providers such as casual labourers and waitresses in bars and hotels, including 12 female sexual workers. Stratified random sampling methodology was used to select study units. Multivariable analysis was conducted to assess independent relationship between alcohol consumption and sexual risky behaviour. Measures of alcohol consumption included the alcohol use disorder test score (AUDIT), having gotten drunk in previous 30 days, drinking at least 2 times a week while measures for risky behaviour included engaging in transactional sex, inconsistent condom use, having sex with non-regular partner and having multiple sexual partners. The level of harmful use of alcohol in the two fishing communities was quite high as 62% of the male and 52% of the female drinkers had got drunk in previous 30 days. The level of risky sexual behaviour was equally high as 63% of the men and 59% of the women had unprotected sex at last sexual event. Of the 3 occupations fishermen had the highest levels of harmful use of alcohol and risky sexual behaviour followed by service providers judging from values of most indicators. The kind of alcohol consumption variables correlated with risky sexual behaviour variables, varied by occupation. Frequent alcohol consumption, higher AUDIT score, having got drunk, longer drinking hours and drinking any day of

  17. Alcohol consumption and risky sexual behaviour in the fishing communities: evidence from two fish landing sites on Lake Victoria in Uganda

    Directory of Open Access Journals (Sweden)

    Tumwesigye Nazarius M

    2012-12-01

    Full Text Available Abstract Background The fishing communities are among population groups that are most at risk of HIV infection, with some studies putting the HIV prevalence at 5 to 10 times higher than in the general population. Alcohol consumption has been identified as one of the major drivers of the sexual risk behaviour in the fishing communities. This paper investigates the relationship between alcohol consumption patterns and risky behaviour in two fishing communities on Lake Victoria. Methods Face-to-face interviews were conducted among 303 men and 172 women at the fish landing sites; categorised into fishermen, traders of fish or fish products and other merchandise, and service providers such as casual labourers and waitresses in bars and hotels, including 12 female sexual workers. Stratified random sampling methodology was used to select study units. Multivariable analysis was conducted to assess independent relationship between alcohol consumption and sexual risky behaviour. Measures of alcohol consumption included the alcohol use disorder test score (AUDIT, having gotten drunk in previous 30 days, drinking at least 2 times a week while measures for risky behaviour included engaging in transactional sex, inconsistent condom use, having sex with non-regular partner and having multiple sexual partners. Results The level of harmful use of alcohol in the two fishing communities was quite high as 62% of the male and 52% of the female drinkers had got drunk in previous 30 days. The level of risky sexual behaviour was equally high as 63% of the men and 59% of the women had unprotected sex at last sexual event. Of the 3 occupations fishermen had the highest levels of harmful use of alcohol and risky sexual behaviour followed by service providers judging from values of most indicators. The kind of alcohol consumption variables correlated with risky sexual behaviour variables, varied by occupation. Frequent alcohol consumption, higher AUDIT score, having

  18. The community structure of over-wintering larval and small juvenile fish in a large estuary

    Science.gov (United States)

    Munk, Peter; Cardinale, Massimiliano; Casini, Michele; Rudolphi, Ann-Christin

    2014-02-01

    The Skagerrak and Kattegat are estuarine straits of high hydrographical and ecological diversity, situated between the saline waters of the North Sea and the brackish waters of the Baltic Sea. These sustain important nursery grounds of many fish species, of which several overwinter during the larval and early juvenile stages. In order to give more insight into the communities of the overwintering ichthyoplankton in estuarine areas, we examine an annual series of observations from a standard survey carried out 1992-2010. Species differences and annual variability in distributions and abundances are described, and linkages between ichthyoplankton abundances and corresponding hydrographical information are analysed by GAM methods. Communities were dominated by herring, gobies, butterfish, sprat, pipefishes, lemon sole and European eel (i.e. glass eel), and all the sampled species showed large annual fluctuations in abundances. The species showed quite specific patterns of distribution although species assemblages with common distributional characteristics were identified. Within these assemblages, the ichthyoplankton abundances showed linkage to environmental characteristics described by bottom-depth and surface temperature and salinity. Hence the study points to a significant structuring of overwintering ichthyoplankton communities in large estuaries, based on the species habitat choice and its response to physical gradients.

  19. Functional diversity and redundancy across fish gut, sediment and water bacterial communities.

    Science.gov (United States)

    Escalas, Arthur; Troussellier, Marc; Yuan, Tong; Bouvier, Thierry; Bouvier, Corinne; Mouchet, Maud A; Flores Hernandez, Domingo; Ramos Miranda, Julia; Zhou, Jizhong; Mouillot, David

    2017-08-01

    This article explores the functional diversity and redundancy in a bacterial metacommunity constituted of three habitats (sediment, water column and fish gut) in a coastal lagoon under anthropogenic pressure. Comprehensive functional gene arrays covering a wide range of ecological processes and stress resistance genes to estimate the functional potential of bacterial communities were used. Then, diversity partitioning was used to characterize functional diversity and redundancy within (α), between (β) and across (γ) habitats. It was showed that all local communities exhibit a highly diversified potential for the realization of key ecological processes and resistance to various environmental conditions, supporting the growing evidence that macro-organisms microbiomes harbour a high functional potential and are integral components of functional gene dynamics in aquatic bacterial metacommunities. Several levels of functional redundancy at different scales of the bacterial metacommunity were observed (within local communities, within habitats and at the metacommunity level). The results suggested a high potential for the realization of spatial ecological insurance within this ecosystem, that is, the functional compensation among microorganisms for the realization and maintenance of key ecological processes, within and across habitats. Finally, the role of macro-organisms as dispersal vectors of microbes and their potential influence on marine metacommunity dynamics were discussed. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

  20. Variation in fish community structure, richness, and diversity in 56 Danish lakes with contrasting depth, size, and trophic state: does the method matter?

    DEFF Research Database (Denmark)

    Menezes, Rosemberg; Borchsenius, Finn; Svenning, J.-C.

    2013-01-01

    a better understanding of fish communities. We compare fish community composition, richness, and diversity in 56 Danish lakes using data obtained by gillnetting in different lake zones and near-shore electrofishing, respectively. On average, electrofishing captured more species than offshore gillnets......, but not more than littoral gillnets. Overall, the different fish sampling methods showed consistency as to fish community structure, but noticeable differences in community–environment relationships. Lake area was the best predictor for fish species richness in the littoral samplings, while it was poor...... community, as all methods miss some important species that other methods capture. However, electrofishing seems to be a fast alternative to gillnets for monitoring fish species richness and composition in littoral habitats of Danish lakes....

  1. Using fish communities to assess streams in Romania: Initial development of an index of biotic integrity

    Science.gov (United States)

    Angermeier, P.L.; Davideanu, G.

    2004-01-01

    Multimetric biotic indices increasingly are used to complement physicochemical data in assessments of stream quality. We initiated development of multimetric indices, based on fish communities, to assess biotic integrity of streams in two physiographic regions of central Romania. Unlike previous efforts to develop such indices for European streams, our metrics and scoring criteria were selected largely on the basis of empirical relations in the regions of interest. We categorised 54 fish species with respect to ten natural-history attributes, then used this information to compute 32 candidate metrics of five types (taxonomic, tolerance, abundance, reproductive, and feeding) for each of 35 sites. We assessed the utility of candidate metrics for detecting anthropogenic impact based on three criteria: (a) range of values taken, (b) relation to a site-quality index (SQI), which incorporated information on hydrologic alteration, channel alteration, land-use intensity, and water chemistry, and (c) metric redundancy. We chose seven metrics from each region to include in preliminary multimetric indices (PMIs). Both PMIs included taxonomic, tolerance, and feeding metrics, but only two metrics were common to both PMIs. Although we could not validate our PMIs, their strong association with the SQI in each region suggests that such indices would be valuable tools for assessing stream quality and could provide more comprehensive assessments than the traditional approaches based solely on water chemistry.

  2. Differences in the metabolic rates of exploited and unexploited fish populations: a signature of recreational fisheries induced evolution?

    Directory of Open Access Journals (Sweden)

    Jan-Michael Hessenauer

    Full Text Available Non-random mortality associated with commercial and recreational fisheries have the potential to cause evolutionary changes in fish populations. Inland recreational fisheries offer unique opportunities for the study of fisheries induced evolution due to the ability to replicate study systems, limited gene flow among populations, and the existence of unexploited reference populations. Experimental research has demonstrated that angling vulnerability is heritable in Largemouth Bass Micropterus salmoides, and is correlated with elevated resting metabolic rates (RMR and higher fitness. However, whether such differences are present in wild populations is unclear. This study sought to quantify differences in RMR among replicated exploited and unexploited populations of Largemouth Bass. We collected age-0 Largemouth Bass from two Connecticut drinking water reservoirs unexploited by anglers for almost a century, and two exploited lakes, then transported and reared them in the same pond. Field RMR of individuals from each population was quantified using intermittent-flow respirometry. Individuals from unexploited reservoirs had a significantly higher mean RMR (6% than individuals from exploited populations. These findings are consistent with expectations derived from artificial selection by angling on Largemouth Bass, suggesting that recreational angling may act as an evolutionary force influencing the metabolic rates of fishes in the wild. Reduced RMR as a result of fisheries induced evolution may have ecosystem level effects on energy demand, and be common in exploited recreational populations globally.

  3. From fish to modern humans--comparative anatomy, homologies and evolution of the head and neck musculature.

    Science.gov (United States)

    Diogo, R; Abdala, V; Lonergan, N; Wood, B A

    2008-10-01

    In a recent paper Diogo (2008) reported the results of the first part of an investigation of the comparative anatomy, homologies and evolution of the head and neck muscles of osteichthyans (bony fish + tetrapods). That report mainly focused on actinopterygian fish, but also compared these fish with certain non-mammalian sarcopterygians. The present paper focuses mainly on sarcopterygians, and particularly on how the head and neck muscles have evolved during the transitions from sarcopterygian fish and non-mammalian tetrapods to monotreme and therian mammals, including modern humans. The data obtained from our dissections of the head and neck muscles of representative members of sarcopterygian fish, amphibians, reptiles, monotremes and therian mammals, such as rodents, tree-shrews, colugos and primates, including modern humans, are compared with the information available in the literature. Our observations and comparisons indicate that the number of mandibular and true branchial muscles (sensu this work) present in modern humans is smaller than that found in mammals such as tree-shrews, rats and monotremes, as well as in reptiles such as lizards. Regarding the pharyngeal musculature, there is an increase in the number of muscles at the time of the evolutionary transition leading to therian mammals, but there was no significant increase during the transition leading to the emergence of higher primates and modern humans. The number of hypobranchial muscles is relatively constant within the therian mammals we examined, although in this case modern humans have more muscles than other mammals. The number of laryngeal and facial muscles in modern humans is greater than that found in most other therian taxa. Interestingly, modern humans possess peculiar laryngeal and facial muscles that are not present in the majority of the other mammalian taxa; this seems to corroborate the crucial role played by vocal communication and by facial expressions in primate and especially in

  4. Project Chrysalis: The Evolution of a Community School.

    Science.gov (United States)

    Garrett, K.

    1996-01-01

    Describes the creation and operation of Project Chrysalis, a community, service-learning school transformed from row houses, where children can learn, work, and gain inspiration from artists and social entrepreneurs involved with Houston's Project Row Houses. Personal narratives of two teachers highlight the school's and students' accomplishments…

  5. The influence of fire-coral colony size and agonistic behaviour of territorial damselfish on associated coral reef fish communities.

    Science.gov (United States)

    Leal, Isabela Carolina Silva; de Araújo, Maria Elisabeth; da Cunha, Simone Rabelo; Pereira, Pedro Henrique Cipresso

    2015-07-01

    Branching hydrocorals from the genus Millepora play an important ecological role in South Atlantic reefs, where branching scleractinian corals are absent. Previous studies have shown a high proportion of reef fish species using branching fire-coral colonies as shelter, breeding, and feeding sites. However, the effects of Millepora spp. colony size and how the agonistic behaviour of a competitive damselfish affect the associated reef fish community are still unknown. The present study examined how fire-coral colony volume and the presence of a highly territorial and aggressive damselfish (Brazilian endemic Stegastes fuscus) affects the reef fish community associated with the fire-coral Millepora alcicornis. M. alcicornis colonies were surveyed from September 2012 to April 2013 at Tamandaré Reefs off Northeast Brazil. Our results show that the abundance and richness of coral associated fish was positively correlated with M. alcicornis coral colony volume. Additionally, behaviour of S. fuscus, the most abundant reef fish species found associated with fire-coral colonies (almost 57% of the fish community), was also influenced by fire-coral colony volume. There was a clear trend of increased agonistic behaviour and feeding on coral polyps as colony volume increased. This trend was reversed for the non-occupational swimming category, which decreased as M. alcicornis colony volume increased. Behavioural ontogenetic changes were also detected for S. fuscus individuals. Juveniles mainly showed two distinct behaviours: sheltered on coral branches and feeding on coral polyps. In contrast, adults presented greater equitability among the behavioural categories, mostly non-occupational swimming around coral colonies and agonistic behaviour. Lastly, S. fuscus individuals actively defended fire-coral colonies from intruders. A large number of agonistic interactions occurred against potential food competitors, which were mainly roving herbivores, omnivores, and sessile

  6. Appropriate Model for Zoning Local Fish Conservation in front of Buddhist Temple on the Bank of the Chi River by Sustainable Community Participation

    OpenAIRE

    Somchob Poo-Inna; Song-Koon Jantakajon; Terdthai Pantachai

    2009-01-01

    Problem statement: The fresh water fish in The Chi River was a major source of food of people living in this area. The objectives of this research were: (1) to study the historical background, current situation and problems of local fish conservation in front of The Chi River by community participation and (2) to find the opriate model for zoning the local fish conservation on the bank of The Chi River by sustainable community participation. Approach: The research area in Esan Reg...

  7. Evolution study of contamination Russian Baltic fish by PCDD/F and WHO-PCB

    Energy Technology Data Exchange (ETDEWEB)

    Shelepchikov, A.; Brodsky, E. [Inst. of Ecology and Evolution of Russian Academy of Sciences (IPEE RAS) (Russian Federation); Shenderyuk, V.; Baholdina, L. [Atlantic Research Inst. of Fish Industry and Oceanography, (AtlantNIRO) (Russian Federation)

    2004-09-15

    Baltic Sea is well known as the most polluted sea in the world, but its fish products have a significant role in diet of Baltic countries habitants. In Dioxin 2003 meeting we have present first results of analysis of Baltic fishes caught by Russian fisherman for market. The results confirmed a rather high level of pollution in the Baltic seafood by PCDD/Fs and have shown necessity of the further researches. Although PCDD/Fs profile in fisher's body is not consist unsteady and was formed under affection of various factors, it was obvious that essential path comes with PCB; also previously were found that WHO-TEQ{sub PCB} in seafood could exceed WHO-TEQ{sub PCDD/F} level. In given works we present results of the analysis of two freshwater species of fishes and updating research of former analyzed kinds, included of WHO-PCBs determination.

  8. Genetic mating systems and reproductive natural histories of fishes: lessons for ecology and evolution.

    Science.gov (United States)

    Avise, John C; Jones, Adam G; Walker, DeEtte; DeWoody, J Andrew

    2002-01-01

    Fish species have diverse breeding behaviors that make them valuable for testing theories on genetic mating systems and reproductive tactics. Here we review genetic appraisals of paternity and maternity in wild fish populations. Behavioral phenomena quantified by genetic markers in various species include patterns of multiple mating by both sexes; frequent cuckoldry by males and rare cuckoldry by females in nest-tending species; additional routes to surrogate parentage via nest piracy and egg-thievery; egg mimicry by nest-tending males; brood parasitism by helper males in cooperative breeders; clutch mixing in oral brooders; kinship in schooling fry of broadcast spawners; sperm storage by dams in female-pregnant species; and sex-role reversal, polyandry, and strong sexual selection on females in some male-pregnant species. Additional phenomena addressed by genetic parentage analyses in fishes include clustered mutations, filial cannibalism, and local population size. All results are discussed in the context of relevant behavioral and evolutionary theory.

  9. Assessing Caribbean Shallow and Mesophotic Reef Fish Communities Using Baited-Remote Underwater Video (BRUV) and Diver-Operated Video (DOV) Survey Techniques

    Science.gov (United States)

    Macaya-Solis, Consuelo; Exton, Dan A.; Gress, Erika; Wright, Georgina; Rogers, Alex D.

    2016-01-01

    Fish surveys form the backbone of reef monitoring and management initiatives throughout the tropics, and understanding patterns in biases between techniques is crucial if outputs are to address key objectives optimally. Often biases are not consistent across natural environmental gradients such as depth, leading to uncertainty in interpretation of results. Recently there has been much interest in mesophotic reefs (reefs from 30–150 m depth) as refuge habitats from fishing pressure, leading to many comparisons of reef fish communities over depth gradients. Here we compare fish communities using stereo-video footage recorded via baited remote underwater video (BRUV) and diver-operated video (DOV) systems on shallow and mesophotic reefs in the Mesoamerican Barrier Reef, Caribbean. We show inconsistent responses across families, species and trophic groups between methods across the depth gradient. Fish species and family richness were higher using BRUV at both depth ranges, suggesting that BRUV is more appropriate for recording all components of the fish community. Fish length distributions were not different between methods on shallow reefs, yet BRUV recorded more small fish on mesophotic reefs. However, DOV consistently recorded greater relative fish community biomass of herbivores, suggesting that studies focusing on herbivores should consider using DOV. Our results highlight the importance of considering what component of reef fish community researchers and managers are most interested in surveying when deciding which survey technique to use across natural gradients such as depth. PMID:27959907

  10. Convergent evolution of modularity in metabolic networks through different community structures

    Directory of Open Access Journals (Sweden)

    Zhou Wanding

    2012-09-01

    Full Text Available Abstract Background It has been reported that the modularity of metabolic networks of bacteria is closely related to the variability of their living habitats. However, given the dependency of the modularity score on the community structure, it remains unknown whether organisms achieve certain modularity via similar or different community structures. Results In this work, we studied the relationship between similarities in modularity scores and similarities in community structures of the metabolic networks of 1021 species. Both similarities are then compared against the genetic distances. We revisited the association between modularity and variability of the microbial living environments and extended the analysis to other aspects of their life style such as temperature and oxygen requirements. We also tested both topological and biological intuition of the community structures identified and investigated the extent of their conservation with respect to the taxomony. Conclusions We find that similar modularities are realized by different community structures. We find that such convergent evolution of modularity is closely associated with the number of (distinct enzymes in the organism’s metabolome, a consequence of different life styles of the species. We find that the order of modularity is the same as the order of the number of the enzymes under the classification based on the temperature preference but not on the oxygen requirement. Besides, inspection of modularity-based communities reveals that these communities are graph-theoretically meaningful yet not reflective of specific biological functions. From an evolutionary perspective, we find that the community structures are conserved only at the level of kingdoms. Our results call for more investigation into the interplay between evolution and modularity: how evolution shapes modularity, and how modularity affects evolution (mainly in terms of fitness and evolvability. Further, our results

  11. Convergent evolution of modularity in metabolic networks through different community structures.

    Science.gov (United States)

    Zhou, Wanding; Nakhleh, Luay

    2012-09-14

    It has been reported that the modularity of metabolic networks of bacteria is closely related to the variability of their living habitats. However, given the dependency of the modularity score on the community structure, it remains unknown whether organisms achieve certain modularity via similar or different community structures. In this work, we studied the relationship between similarities in modularity scores and similarities in community structures of the metabolic networks of 1021 species. Both similarities are then compared against the genetic distances. We revisited the association between modularity and variability of the microbial living environments and extended the analysis to other aspects of their life style such as temperature and oxygen requirements. We also tested both topological and biological intuition of the community structures identified and investigated the extent of their conservation with respect to the taxonomy. We find that similar modularities are realized by different community structures. We find that such convergent evolution of modularity is closely associated with the number of (distinct) enzymes in the organism's metabolome, a consequence of different life styles of the species. We find that the order of modularity is the same as the order of the number of the enzymes under the classification based on the temperature preference but not on the oxygen requirement. Besides, inspection of modularity-based communities reveals that these communities are graph-theoretically meaningful yet not reflective of specific biological functions. From an evolutionary perspective, we find that the community structures are conserved only at the level of kingdoms. Our results call for more investigation into the interplay between evolution and modularity: how evolution shapes modularity, and how modularity affects evolution (mainly in terms of fitness and evolvability). Further, our results call for exploring new measures of modularity and network

  12. Retention of habitat complexity minimizes disassembly of reef fish communities following disturbance: a large-scale natural experiment.

    Directory of Open Access Journals (Sweden)

    Michael J Emslie

    Full Text Available High biodiversity ecosystems are commonly associated with complex habitats. Coral reefs are highly diverse ecosystems, but are under increasing pressure from numerous stressors, many of which reduce live coral cover and habitat complexity with concomitant effects on other organisms such as reef fishes. While previous studies have highlighted the importance of habitat complexity in structuring reef fish communities, they employed gradient or meta-analyses which lacked a controlled experimental design over broad spatial scales to explicitly separate the influence of live coral cover from overall habitat complexity. Here a natural experiment using a long term (20 year, spatially extensive (∼ 115,000 kms(2 dataset from the Great Barrier Reef revealed the fundamental importance of overall habitat complexity for reef fishes. Reductions of both live coral cover and habitat complexity had substantial impacts on fish communities compared to relatively minor impacts after major reductions in coral cover but not habitat complexity. Where habitat complexity was substantially reduced, species abundances broadly declined and a far greater number of fish species were locally extirpated, including economically important fishes. This resulted in decreased species richness and a loss of diversity within functional groups. Our results suggest that the retention of habitat complexity following disturbances can ameliorate the impacts of coral declines on reef fishes, so preserving their capacity to perform important functional roles essential to reef resilience. These results add to a growing body of evidence about the importance of habitat complexity for reef fishes, and represent the first large-scale examination of this question on the Great Barrier Reef.

  13. Human activities as a driver of spatial variation in the trophic structure of fish communities on Pacific coral reefs.

    Science.gov (United States)

    Ruppert, Jonathan L W; Vigliola, Laurent; Kulbicki, Michel; Labrosse, Pierre; Fortin, Marie-Josée; Meekan, Mark G

    2018-01-01

    Anthropogenic activities such as land-use change, pollution and fishing impact the trophic structure of coral reef fishes, which can influence ecosystem health and function. Although these impacts may be ubiquitous, they are not consistent across the tropical Pacific Ocean. Using an extensive database of fish biomass sampled using underwater visual transects on coral reefs, we modelled the impact of human activities on food webs at Pacific-wide and regional (1,000s-10,000s km) scales. We found significantly lower biomass of sharks and carnivores, where there were higher densities of human populations (hereafter referred to as human activity); however, these patterns were not spatially consistent as there were significant differences in the trophic structures of fishes among biogeographic regions. Additionally, we found significant changes in the benthic structure of reef environments, notably a decline in coral cover where there was more human activity. Direct human impacts were the strongest in the upper part of the food web, where we found that in a majority of the Pacific, the biomass of reef sharks and carnivores were significantly and negatively associated with human activity. Finally, although human-induced stressors varied in strength and significance throughout the coral reef food web across the Pacific, socioeconomic variables explained more variation in reef fish trophic structure than habitat variables in a majority of the biogeographic regions. Notably, economic development (measured as GDP per capita) did not guarantee healthy reef ecosystems (high coral cover and greater fish biomass). Our results indicate that human activities are significantly shaping patterns of trophic structure of reef fishes in a spatially nonuniform manner across the Pacific Ocean, by altering processes that organize communities in both "top-down" (fishing of predators) and "bottom-up" (degradation of benthic communities) contexts. © 2017 John Wiley & Sons Ltd.

  14. Trophic analysis of the fish community in the Ciénega Churince, Cuatro Ciénegas, Coahuila

    Directory of Open Access Journals (Sweden)

    Ariana Hernández

    2017-09-01

    Full Text Available Fish diets were analyzed to evaluate the dynamic trophs of the fish community in the Churince wetland system of the Cuatro Ciénegas, where the fauna consists of nine species: endemic, native and introduced. In nine sampling events (between February 2011 and May 2014 556 specimens of all nine species were collected. Stomach contents were analyzed and the Relative Importance Index (IRI was calculated. The feed coefficient (Q of the diets and the accumulated trophic diversity (Hk, as well as the amplitude of the trophic niche were evaluated. Feeding strategies in the fish community were found to be eurifagic. The main foods in general were insects, crustaceans, gastropods, plants and teleosts. According to the average linkage method, four functional trophic groups were defined, with no higher consumption species; nevertheless all were regulators, mainly invertebrates. Therefore, the chain reaction in food control was higher from top to bottom, meaning a downwards dietary control.

  15. Spatial variability in fish species assemblage and community structure in four subtropical lagoons of the Okavango Delta, Botswana

    Science.gov (United States)

    Mosepele, K.; Mosepele, B.; Bokhutlo, T.; Amutenya, K.

    The species assemblage and community structure of four lagoons was assessed through time series data collected between 2001 and 2005 in the Okavango Delta. The main aim of this study was to evaluate the importance of lagoons as fish habitats in the Delta. Therefore, this study assessed the importance of these habitats through determining fish species diversity, composition, relative abundance, and community structure between the lagoons. Forty six species belonging to 11 families and five orders were collected over the study period. Main results showed that Cichlidae was the most important family and had the highest species richness in the lagoons. Significant differences ( p lodges are constructed, which makes subsequently makes them vulnerable to pollution. Therefore, the integrity of lagoon habitats needs to be maintained so that their ecosystem functioning (i.e. fish repositories) is maintained.

  16. Chromosome evolution in Solanum traced by cross-species BAC-FISH

    NARCIS (Netherlands)

    Szinay, D.; Wijnker, E.; Berg, van den R.G.; Visser, R.G.F.; Jong, de J.H.S.G.M.; Bai, Y.

    2012-01-01

    Chromosomal rearrangements are relatively rare evolutionary events and can be used as markers to study karyotype evolution. This research aims to use such rearrangements to study chromosome evolution in Solanum. Chromosomal rearrangements between Solanum crops and several related wild species were

  17. Fish genomes provide novel insights into the evolution of vertebrate secretin receptors and their ligand.

    Science.gov (United States)

    Cardoso, João C R; Félix, Rute C; Trindade, Marlene; Power, Deborah M

    2014-12-01

    The secretin receptor (SCTR) is a member of Class 2 subfamily B1 GPCRs and part of the PAC1/VPAC receptor subfamily. This receptor has long been known in mammals but has only recently been identified in other vertebrates including teleosts, from which it was previously considered to be absent. The ligand for SCTR in mammals is secretin (SCT), an important gastrointestinal peptide, which in teleosts has not yet been isolated, or the gene identified. This study revises the evolutionary model previously proposed for the secretin-GPCRs in metazoan by analysing in detail the fishes, the most successful of the extant vertebrates. All the Actinopterygii genomes analysed and the Chondrichthyes and Sarcopterygii fish possess a SCTR gene that shares conserved sequence, structure and synteny with the tetrapod homologue. Phylogenetic clustering and gene environment comparisons revealed that fish and tetrapod SCTR shared a common origin and diverged early from the PAC1/VPAC subfamily group. In teleosts SCTR duplicated as a result of the fish specific whole genome duplication but in all the teleost genomes analysed, with the exception of tilapia (Oreochromis niloticus), one of the duplicates was lost. The function of SCTR in teleosts is unknown but quantitative PCR revealed that in both sea bass (Dicentrarchus labrax) and tilapia (Oreochromis mossambicus) transcript abundance is high in the gastrointestinal tract suggesting it may intervene in similar processes to those in mammals. In contrast, no gene encoding the ligand SCT was identified in the ray-finned fishes (Actinopterygii) although it was present in the coelacanth (lobe finned fish, Sarcopterygii) and in the elephant shark (holocephalian). The genes in linkage with SCT in tetrapods and coelacanth were also identified in ray-finned fishes supporting the idea that it was lost from their genome. At present SCTR remains an orphan receptor in ray-finned fishes and it will be of interest in the future to establish why SCT was

  18. The evolution of pharyngognathy: a phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond.

    Science.gov (United States)

    Wainwright, Peter C; Smith, W Leo; Price, Samantha A; Tang, Kevin L; Sparks, John S; Ferry, Lara A; Kuhn, Kristen L; Eytan, Ron I; Near, Thomas J

    2012-12-01

    The perciform group Labroidei includes approximately 2600 species and comprises some of the most diverse and successful lineages of teleost fishes. Composed of four major clades, Cichlidae, Labridae (wrasses, parrotfishes, and weed whitings), Pomacentridae (damselfishes), and Embiotocidae (surfperches); labroids have been an icon for studies of biodiversity, adaptive radiation, and sexual selection. The success and diversification of labroids have been largely attributed to the presence of a major innovation in the pharyngeal jaw apparatus, pharyngognathy, which is hypothesized to increase feeding capacity and versatility. We present results of large-scale phylogenetic analyses and a survey of pharyngeal jaw functional morphology that allow us to examine the evolution of pharyngognathy in a historical context. Phylogenetic analyses were based on a sample of 188 acanthomorph (spiny-rayed fish) species, primarily percomorphs (perch-like fishes), and DNA sequence data collected from 10 nuclear loci that have been previously used to resolve higher level ray-finned fish relationships. Phylogenies inferred from this dataset using maximum likelihood, Bayesian, and species tree analyses indicate polyphyly of the traditional Labroidei and clearly separate Labridae from the remainder of the traditional labroid lineages (Cichlidae, Embiotocidae, and Pomacentridae). These three "chromide" families grouped within a newly discovered clade of 40 families and more than 4800 species (>27% of percomorphs and >16% of all ray-finned fishes), which we name Ovalentaria for its characteristic demersal, adhesive eggs with chorionic filaments. This fantastically diverse clade includes some of the most species-rich lineages of marine and freshwater fishes, including all representatives of the Cichlidae, Embiotocidae, Pomacentridae, Ambassidae, Gobiesocidae, Grammatidae, Mugilidae, Opistognathidae, Pholidichthyidae, Plesiopidae (including Notograptus), Polycentridae, Pseudochromidae

  19. Disentangling the influences of habitat structure and limnological predictors on stream fish communities of a coastal basin, southeastern Brazil

    Directory of Open Access Journals (Sweden)

    Fabio Cop Ferreira

    Full Text Available In stream environments habitat structure and limnological factors interact regulating patterns of energy and material transfer and affecting fish communities. In the coastal basins of Southeastern Brazil, limnological and structural characteristics differ between clear and blackwaters streams. The former have a diversity of substrate types, higher water velocities, and lower water conductivity, while the latter have sandy substrate, tea-colored and acidic waters, and low water velocities. In this study, we verified the relative importance of habitat structure and limnological variables in predicting patterns of variation in stream fish communities. Eight first to third order streams were sampled in the coastal plain of Itanhaém River basin. We captured 34 fish species and verified that community structure was influenced by physical habitat and limnology, being the former more important. A fraction of the variation could not be totally decomposed, and it was assigned to the joint influence of limnology and habitat structure. Some species that were restricted to blackwater streams, may have physiological and behavioral adaptations to deal with the lower pH levels. When we examined only the clearwater streams, all the explained variation in fish community composition was assigned to structural factors, which express specific preferences for different types of habitats.

  20. Relationships between fish, sea urchins and macroalgae: The structure of shallow rocky sublittoral communities in the Cyclades, Eastern Mediterranean

    Science.gov (United States)

    Giakoumi, Sylvaine; Cebrian, Emma; Kokkoris, Giorgos D.; Ballesteros, Enric; Sala, Enric

    2012-08-01

    Historical overfishing is the most likely explanation for the depletion of the shallow sublittoral communities in many areas not least in the Cyclades Archipelago, Greece. The present study is the first quantitative study of the shallow rocky sublittoral of the Cyclades based on in situ underwater surveys of algal cover, and fish and sea urchin abundance at 181 sampling sites in 25 islands to provide a baseline and investigate the relationship between these communities. Algal turf was the most abundant algal functional group, and canopy algae of the genus Cystoseira were more abundant at the northern islands. A range in fish biomass of almost two orders of magnitude was found across islands, but overall the Cyclades displayed much lower values than fished areas of the Western Mediterranean. We observed apex predators only in 25% of our sampling sites, and their biomass was uncorrelated to total fish biomass, indicating a depleted ecosystem. Sea urchin biomass was also low but similar to values found in other Mediterranean islands and was positively correlated with barrens. We observed a gradient of benthic community complexity from sea urchin barrens to communities dominated by Cystoseira spp. There was no correlation between sea urchins and their predators Diplodus spp., which presented extremely low densities.

  1. Changes in marine fish community under influence of Leningrad nuclear power plant and another human activities in the watershed of Koporskaya Bay (Gulf of Finland, Baltic Sea)

    International Nuclear Information System (INIS)

    Zimin, V.L.

    1999-01-01

    The long-time observations (1978-1997) in the Leningrad nuclear power plant cooling water-body (Koporskaya Bay) in the frame of the Regional Ecological Monitoring Program provided reliable data on the local fish community state. Regular observations allow us to trace structural changes in fish community, because they follow changes on physiological and population levels in this community. 45 species of fishes and lamprey were recorded during all investigation period. However, the species diversity is very poor. Wittaker dominance-diversity curves reflect degradation in the coastal fish community being under influence of the complex industrial and agricultural factors. The fish community is now dominated by only 2-3 species, especially threespined stickleback and ninespined stickleback; while the first species more abundant then the second one as far as ∼10 times

  2. Post-duplication charge evolution of phosphoglucose isomerases in teleost fishes through weak selection on many amino acid sites

    Directory of Open Access Journals (Sweden)

    Sato Yukuto

    2007-10-01

    Full Text Available Abstract Background The partitioning of ancestral functions among duplicated genes by neutral evolution, or subfunctionalization, has been considered the primary process for the evolution of novel proteins (neofunctionalization. Nonetheless, how a subfunctionalized protein can evolve into a more adaptive protein is poorly understood, mainly due to the limitations of current analytical methods, which can detect only strong selection for amino acid substitutions involved in adaptive molecular evolution. In this study, we employed a comparative evolutionary approach to this question, focusing on differences in the structural properties of a protein, specifically the electric charge, encoded by fish-specific duplicated phosphoglucose isomerase (Pgi genes. Results Full-length cDNA cloning, RT-PCR based gene expression analyses, and comparative sequence analyses showed that after subfunctionalization with respect to the expression organ of duplicate Pgi genes, the net electric charge of the PGI-1 protein expressed mainly in internal tissues became more negative, and that of PGI-2 expressed mainly in muscular tissues became more positive. The difference in net protein charge was attributable not to specific amino acid sites but to the sum of various amino acid sites located on the surface of the PGI molecule. Conclusion This finding suggests that the surface charge evolution of PGI proteins was not driven by strong selection on individual amino acid sites leading to permanent fixation of a particular residue, but rather was driven by weak selection on a large number of amino acid sites and consequently by steady directional and/or purifying selection on the overall structural properties of the protein, which is derived from many modifiable sites. The mode of molecular evolution presented here may be relevant to various cases of adaptive modification in proteins, such as hydrophobic properties, molecular size, and electric charge.

  3. Agonistic behavior among three stocked trout species in a novel reservoir fish community

    Science.gov (United States)

    Budy, Phaedra; Hafen, Konrad

    2015-01-01

    The popularity of reservoirs to support sport fisheries has led to the stocking of species that did not co-evolve, creating novel reservoir fish communities. In Utah, the Bear Lake strain of Bonneville Cutthroat Trout Oncorhynchus clarkii utah and tiger trout (female Brown Trout Salmo trutta × male Brook Trout Salvelinus fontinalis) are being more frequently added to a traditional stocking regimen consisting primarily of Rainbow TroutO. mykiss. Interactions between these three predatory species are not well understood, and studies evaluating community interactions have raised concern for an overall decrease of trout condition. To evaluate the potential for negative interactions among these species, we tested aggression in laboratory aquaria using three-species and pairwise combinations at three densities. Treatments were replicated before and after feeding. During the three-species trials Rainbow Trout initiated 24.8 times more aggressive interactions than Cutthroat Trout and 10.2 times more aggressive interactions than tiger trout, and tiger trout exhibited slightly (1.9 times) more aggressive initiations than Cutthroat Trout. There was no significant difference in behavior before versus after feeding for any species, and no indication of increased aggression at higher densities. Although Rainbow Trout in aquaria may benefit from their bold, aggressive behavior, given observations of decreased relative survival in the field, these benefits may be outweighed in reservoirs, possibly through unnecessary energy expenditure and exposure to predators.

  4. A description of the nearshore fish communities in the Huron-Erie Corridor using multiple gear types

    Science.gov (United States)

    Francis, James T.; Chiotti, Justin A.; Boase, James C.; Thomas, Mike V.; Manny, Bruce A.; Roseman, Edward F.

    2013-01-01

    Great Lakes coastal wetlands provide a critical habitat for many fish species throughout their life cycles. Once home to one of the largest wetland complexes in the Great Lakes, coastal wetlands in the Huron–Erie Corridor (HEC) have decreased dramatically since the early 1900s. We characterized the nearshore fish communities at three different wetland complexes in the HEC using electrofishing, seines, and fyke nets. Species richness was highest in the Detroit River (63), followed by the St. Clair Delta (56), and Western Lake Erie (47). The nearshore fish communities in the Detroit River and St. Clair Delta consisted primarily of shiners, bluntnose minnow, centrarchids, and brook silverside, while the Western Lake Erie sites consisted of high proportions of non-native taxa including common carp, gizzard shad, goldfish, and white perch. Species richness estimates using individual-based rarefaction curves were higher when using electrofishing data compared to fyke nets or seine hauls at each wetland. Twelve fish species were captured exclusively during electrofishing assessments, while one species was captured exclusively in fyke nets, and none exclusively during seine hauls. Western Lake Erie wetlands were more indicative of degraded systems with lower species richness, lower proportion of turbidity intolerant species, and increased abundance of non-native taxa. This work highlights the importance of coastal wetlands in the HEC by capturing 69 different fish species utilizing these wetlands to fulfill life history requirements and provides insight when selecting gears to sample nearshore littoral areas.

  5. Community structure of fish larvae in mangroves with different root types in Labuhan coastal area, Sepulu - Madura

    Science.gov (United States)

    Muzaki, Farid Kamal; Giffari, Aninditha; Saptarini, Dian

    2017-06-01

    Mangrove root complexity and shading are well known to give positive correlation for both juveniles and adult fishes. However, it is remain unclear whether that complexity would affect the community of fish larvae (ichthyoplankton). This study aimed to address the question, especially in mangrove area in coastal area of Sepulu, Madura which projected as a mangrove protection area. Sampling periods were from March to May, 2016. The samples of fish larvae were collected by plankton net (mesh-size 0.150 and 0.265 mm) from six different locations representing different root types (stilt root, pneumatophore, combination of stilt root-pneumatophore and unvegetated area). As the results, 6 families were identified, namely Gobiidae, Blennidae, Pomacentridae, Carangidae, Engraulidae and Ambassidae, respectively. Gobiidae seems to be the most abundant and widely dispersed in the area. Results of two-way AnovadanTukey HSD (both at p=0.05) indicate that there were significant difference in the larval abundance regarding locations, sampling periods and interaction of both factors. As for number of taxa, significant difference occurred only from factors of locations and sampling periods, but not for interaction of both factors. Highest larval abundance and number of taxa occurred in Rhizophoraspp (with stilt root), indicating that root complexity would affect the community of fish larvae. Ordination by canonical analysis shows that different taxa of the fish larvae are tend to be distributed on different locations.

  6. Fish community reassembly after a coral mass mortality: higher trophic groups are subject to increased rates of extinction.

    Science.gov (United States)

    Alonso, David; Pinyol-Gallemí, Aleix; Alcoverro, Teresa; Arthur, Rohan

    2015-05-01

    Since Gleason and Clements, our understanding of community dynamics has been influenced by theories emphasising either dispersal or niche assembly as central to community structuring. Determining the relative importance of these processes in structuring real-world communities remains a challenge. We tracked reef fish community reassembly after a catastrophic coral mortality in a relatively unfished archipelago. We revisited the stochastic model underlying MacArthur and Wilson's Island Biogeography Theory, with a simple extension to account for trophic identity. Colonisation and extinction rates calculated from decadal presence-absence data based on (1) species neutrality, (2) trophic identity and (3) site-specificity were used to model post-disturbance reassembly, and compared with empirical observations. Results indicate that species neutrality holds within trophic guilds, and trophic identity significantly increases overall model performance. Strikingly, extinction rates increased clearly with trophic position, indicating that fish communities may be inherently susceptible to trophic downgrading even without targeted fishing of top predators. © 2015 John Wiley & Sons Ltd/CNRS.

  7. Long-term changes in fish communities of the Ria Formosa coastal lagoon (southern Portugal) based on two studies made 20 years apart

    Science.gov (United States)

    Ribeiro, Joaquim; Monteiro, Carlos C.; Monteiro, Pedro; Bentes, Luis; Coelho, Rui; Gonçalves, Jorge M. S.; Lino, Pedro G.; Erzini, Karim

    2008-01-01

    Fish communities of the Ria Formosa coastal lagoon (south Portugal) were sampled on a monthly basis with a beach seine at 4 sites, during two different time periods: 1980-1986 and 2001-2002. Community indices, species ranking and multivariate analysis were used in order to identify changes in the fish community between the two time periods. A total of 153,511 fish representing 57 taxa were recorded. Although species composition was very similar for both sampling periods, multivariate analysis performed on annual species abundance in number and weight revealed differences in fish community structure between the two periods. Structural changes in fish community were related mostly to a sharp decrease in the abundance of Mugilidae from 1980-1986 to 2001-2002. These changes were probably associated to a decrease in organic matter contents and nutrients concentrations due to improvements in sewage treatment and better water circulation inside the lagoon. The changes in fish community structure are more evident in the inner areas of the lagoon than near the inlet. The association between changes in sewage patterns and changes in the ichthyofaunal community structure reinforces the importance of fish communities as a biological indicator of human induced changes in marine systems.

  8. Distance from a fishing community explains fish abundance in a no-take zone with weak compliance

    OpenAIRE

    Advani, Sahir; Rix, Laura N.; Aherne, Danielle M.; Alwany, Magdy A.; Bailey, David M.

    2015-01-01

    There are numerous examples of no-take marine reserves effectively conserving fish stocks within their boundaries. However, no-take reserves can be rendered ineffective and turned into ?paper parks? through poor compliance and weak enforcement of reserve regulations. Long-term monitoring is thus essential to assess the effectiveness of marine reserves in meeting conservation and management objectives. This study documents the present state of the 15-year old no-take zone (NTZ) of South El Gha...

  9. Impact of discards of beam trawl fishing on the nematode community from the Tagus estuary (Portugal)

    Energy Technology Data Exchange (ETDEWEB)

    Franco, M.A. [Marine Biology Section, Biology Department, Ghent University, Krijgslaan 281 (S8), 9000 Gent (Belgium); Oceanography Institute, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016 Lisboa (Portugal); Steyaert, M. [Marine Biology Section, Biology Department, Ghent University, Krijgslaan 281 (S8), 9000 Gent (Belgium); Cabral, H.N. [Oceanography Institute, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016 Lisboa (Portugal); Tenreiro, R.; Chambel, L. [Instituto de Ciencia Aplicada e Tecnologia, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016 Lisboa (Portugal); Vincx, M. [Marine Biology Section, Biology Department, Ghent University, Krijgslaan 281 (S8), 9000 Gent (Belgium); Costa, M.J. [Oceanography Institute, Faculty of Sciences, University of Lisbon, Campo Grande, 1749-016 Lisboa (Portugal); Vanaverbeke, J. [Marine Biology Section, Biology Department, Ghent University, Krijgslaan 281 (S8), 9000 Gent (Belgium)], E-mail: jan.vanaverbeke@ugent.be

    2008-10-15

    The impact of dead discards, originating from beam trawl fishing on the nematode community from the Tagus estuary was investigated in terms of vertical distribution of the dominant nematode groups. Sediment cores were collected from a mud-flat from the Tagus estuary. Crangoncrangon (Linnaeus, 1758) carcasses were added to the surface of the cores, simulating the settling of dead discards on the sediment. The vertical distribution of the dominant nematode groups was determined up to 4 cm deep at four different moments in time post deposition (0, 2, 4 and 6 h) and compared to control cores. The C.crangon addition to the sediment led to the formation of black spots and therefore oxygen depleted areas at the sediment surface. The Chromadora/Ptycholaimellus group, normally dominant at the surface layer, migrated downwards due to their high sensibility to toxic conditions. Sabatieria presented the opposite trend and became the dominant group at the surface layer. Since Sabatieria is tolerant to oxygen stressed conditions and high sulphide concentrations, we suggest that it migrated opportunistically towards an unoccupied niche. Daptonema, Metachromadora and Terschellingia did not show any vertical migration, reflecting their tolerance to anoxic and high sulphidic conditions. Our study showed that an accumulation of dead discards at the sediment surface might therefore alter the nematode community vertical distribution. This effect is apparently closely related to toxic conditions in the sediment, induced by the deposition of C.crangon at the sediment surface. These alterations might be temporal and reflect an adaptation of the nematode community to dynamic intertidal environments.

  10. Impact of discards of beam trawl fishing on the nematode community from the Tagus estuary (Portugal)

    International Nuclear Information System (INIS)

    Franco, M.A.; Steyaert, M.; Cabral, H.N.; Tenreiro, R.; Chambel, L.; Vincx, M.; Costa, M.J.; Vanaverbeke, J.

    2008-01-01

    The impact of dead discards, originating from beam trawl fishing on the nematode community from the Tagus estuary was investigated in terms of vertical distribution of the dominant nematode groups. Sediment cores were collected from a mud-flat from the Tagus estuary. Crangoncrangon (Linnaeus, 1758) carcasses were added to the surface of the cores, simulating the settling of dead discards on the sediment. The vertical distribution of the dominant nematode groups was determined up to 4 cm deep at four different moments in time post deposition (0, 2, 4 and 6 h) and compared to control cores. The C.crangon addition to the sediment led to the formation of black spots and therefore oxygen depleted areas at the sediment surface. The Chromadora/Ptycholaimellus group, normally dominant at the surface layer, migrated downwards due to their high sensibility to toxic conditions. Sabatieria presented the opposite trend and became the dominant group at the surface layer. Since Sabatieria is tolerant to oxygen stressed conditions and high sulphide concentrations, we suggest that it migrated opportunistically towards an unoccupied niche. Daptonema, Metachromadora and Terschellingia did not show any vertical migration, reflecting their tolerance to anoxic and high sulphidic conditions. Our study showed that an accumulation of dead discards at the sediment surface might therefore alter the nematode community vertical distribution. This effect is apparently closely related to toxic conditions in the sediment, induced by the deposition of C.crangon at the sediment surface. These alterations might be temporal and reflect an adaptation of the nematode community to dynamic intertidal environments

  11. Influence of coral cover and structural complexity on the accuracy of visual surveys of coral-reef fish communities

    KAUST Repository

    Coker, Darren James

    2017-04-20

    Using manipulated patch reefs with combinations of varying live-coral cover (low, medium and high) and structural complexity (low and high), common community metrics (abundance, diversity, richness and community composition) collected through standard underwater visual census techniques were compared with exhaustive collections using a fish anaesthetic (clove oil). This study showed that reef condition did not influence underwater visual census estimates at a community level, but reef condition can influence the detectability of some small and cryptic species and this may be exacerbated if surveys are conducted on a larger scale.

  12. Influence of coral cover and structural complexity on the accuracy of visual surveys of coral-reef fish communities

    KAUST Repository

    Coker, Darren James; Nowicki, J. P.; Graham, N. A. J.

    2017-01-01

    Using manipulated patch reefs with combinations of varying live-coral cover (low, medium and high) and structural complexity (low and high), common community metrics (abundance, diversity, richness and community composition) collected through standard underwater visual census techniques were compared with exhaustive collections using a fish anaesthetic (clove oil). This study showed that reef condition did not influence underwater visual census estimates at a community level, but reef condition can influence the detectability of some small and cryptic species and this may be exacerbated if surveys are conducted on a larger scale.

  13. How will coral reef fish communities respond to climate-driven disturbances? Insight from landscape-scale perturbations.

    Science.gov (United States)

    Adam, Thomas C; Brooks, Andrew J; Holbrook, Sally J; Schmitt, Russell J; Washburn, Libe; Bernardi, Giacomo

    2014-09-01

    Global climate change is rapidly altering disturbance regimes in many ecosystems including coral reefs, yet the long-term impacts of these changes on ecosystem structure and function are difficult to predict. A major ecosystem service provided by coral reefs is the provisioning of physical habitat for other organisms, and consequently, many of the effects of climate change on coral reefs will be mediated by their impacts on habitat structure. Therefore, there is an urgent need to understand the independent and combined effects of coral mortality and loss of physical habitat on reef-associated biota. Here, we use a unique series of events affecting the coral reefs around the Pacific island of Moorea, French Polynesia to differentiate between the impacts of coral mortality and the degradation of physical habitat on the structure of reef fish communities. We found that, by removing large amounts of physical habitat, a tropical cyclone had larger impacts on reef fish communities than an outbreak of coral-eating sea stars that caused widespread coral mortality but left the physical structure intact. In addition, the impacts of declining structural complexity on reef fish assemblages accelerated as structure became increasingly rare. Structure provided by dead coral colonies can take up to decades to erode following coral mortality, and, consequently, our results suggest that predictions based on short-term studies are likely to grossly underestimate the long-term impacts of coral decline on reef fish communities.

  14. The community composition and production of phytoplankton in fish pens of Cape Bolinao, Pangasinan: a field study

    International Nuclear Information System (INIS)

    Yap, Leni G.; Azanza, Rhodora V.; Talaue-McManus, Liana

    2004-01-01

    From 1995 up to the present, fish pens proliferated in the municipal waters of Bolinao, northern Philippines. Since then, fish kills and phytoplankton blooms have been recurrent. Have fishpens altered the phytoplankton community composition and production of these waters? The phytoplankton community in Cape Bolinao, Lingayen Gulf is typical of a tropical coastal area where diatoms alternate with dinoflagellates during the dry and wet seasons. In the nutrient-rich fish pens, phytoplankton in this study showed a lower diatom/dinoflagellate ratio and unusually high phytoplankton counts of 10 4 cells/l and even as high as 10 5 cells/l. Correlations between physico-chemical parameters, phytoplankton production and community composition were made in 2001. This paper tried to explain the occurrence of a Cylindrotheca closterium bloom (10 5 cells/l), during the dry season of the same year and a Prorocentrum minimum bloom (4.7 x 10 5 cells/l), which accompanied a massive fish kill during January 2002

  15. The influence of flood pulse on fish communities of floodplain canals in the Middle Solimões River, Brazil

    Directory of Open Access Journals (Sweden)

    Raniere G. C. Sousa

    Full Text Available The functioning of large river systems with adjacent floodplains is strongly influenced by the flood pulse. This phenomenon is the main structuring force for the biota, including fish communities that use floodplain environments for spawning, feeding, nursery and refuge. In floodplains and in the entire basin, the volume of water controls internal flows. During rising water, the high discharge of the river acts as a natural barrier to the canals that connect floodplain lakes and the Solimões River, because the water flows from river to lake. During the dry period, there is a reduction of discharge and the water flow is reversed or stationary. These canals are environments with distinct ecological characteristics such as differentiated limnology and water level variation intensely affected by the hydrological cycle. Therefore, we surveyed the influence of the flood pulse on fish communities that inhabit two canals that connect floodplain lakes to the Middle Solimões River. Particularly, we evaluated the hypothesis that the Solimões River flow direction is not perfectly parallel to its banks, which creates peripheral flows that direct water from the rivers to the floodplain lake canals. Our analysis indicated that the seasonal pattern is stronger than the spatial. Beside this, we observed that the positions of the canals in relation to the main river flow somehow affect the fish assemblages. Finally, we conclude that the flood pulse is the main structuring force acting on these fish communities.

  16. An assessment of fish communities along a piedmont river receiving organic pollution (Aconquija Mountains, Argentina)

    International Nuclear Information System (INIS)

    Fernandez, Luis; Bechara, Jose A

    2010-01-01

    The relationships between fish assemblage structure and environmental variables along a pollution gradient in the Medina River were analyzed over a year in four sampling sites (S1-S4). The river flows in a mountain-plain transition and is affected by several small town waste water and sugar cane industries effluents. Environmental variables were divided in two sets, hereafter named pollution and natural. The first set included water quality variables modified by anthropogenic activities such as D.O. (Dissolved Oxygen), C.O.D. (Chemical Demand Oxygen), and dissolved ion concentrations. Natural variables included altitude, position, and time of the year. The upstream site (S1) had the lowest species richness and C.P.U.E. (Catch per Unit of Effort). The number of species and density increased down river (S2-S3). S1 was inhabited by an invertivore species (Trichomycterus corduvensis) that has low tolerance to adverse environmental conditions, and has high D.O. requirements. S4 sustained the most tolerant and abundant species (Otocinclus vittatus, Corydoras paleatus), which endure the lowest D.O. and the highest C.O.D. a Canonical Correspondence Analysis for natural variables showed a significant gradient of species composition related to altitude and discharge. Water quality degradation by sugar cane factories and urban development, coupled with natural climatic, topographic and hydrological factors explained a significant amount of spatial and temporal variation in fish community structure (48%). natural and pollution variables shared about 15% of total variance. however, pollution variables were not significant after partitioning out the effects of natural variables. Natural variability remained significant after removal of pollution effects.

  17. Do fishes have nociceptors? Evidence for the evolution of a vertebrate sensory system.

    OpenAIRE

    Sneddon, Lynne U; Braithwaite, Victoria A; Gentle, Michael J

    2003-01-01

    Nociception is the detection of a noxious tissue-damaging stimulus and is sometimes accompanied by a reflex response such as withdrawal. Pain perception, as distinct from nociception, has been demonstrated in birds and mammals but has not been systematically studied in lower vertebrates. We assessed whether a fish possessed cutaneous nociceptors capable of detecting noxious stimuli and whether its behaviour was sufficiently adversely affected by the administration of a noxious stimulus. Elect...

  18. Sex Chromosome Evolution and Genomic Divergence in the Fish Hoplias malabaricus (Characiformes, Erythrinidae)

    Czech Academy of Sciences Publication Activity Database

    Sember, Alexandr; Bertollo, L.A.C.; Ráb, Petr; Yano, C. F.; Hatanaka, T.; de Oliveira, E. A.; de Bello Cioffi, M.

    2018-01-01

    Roč. 9, č. 1 (2018), č. článku 71. ISSN 1664-8021 R&D Projects: GA MŠk EF15_003/0000460 Institutional support: RVO:67985904 Keywords : fish cytogenetics * multiple sex chromosomes * sex-determining region Subject RIV: EB - Genetics ; Molecular Biology OBOR OECD: Genetics and heredity (medical genetics to be 3) Impact factor: 3.789, year: 2016

  19. Drinking by amphibious fish: convergent evolution of thirst mechanisms during vertebrate terrestrialization.

    Science.gov (United States)

    Katayama, Yukitoshi; Sakamoto, Tatsuya; Saito, Kazuhiro; Tsuchimochi, Hirotsugu; Kaiya, Hiroyuki; Watanabe, Taro; Pearson, James T; Takei, Yoshio

    2018-01-12

    Thirst aroused in the forebrain by angiotensin II (AngII) or buccal drying motivates terrestrial vertebrates to search for water, whereas aquatic fish can drink surrounding water only by reflex swallowing generated in the hindbrain. Indeed, AngII induces drinking through the hindbrain even after removal of the whole forebrain in aquatic fish. Here we show that AngII induces thirst also in the amphibious mudskipper goby without direct action on the forebrain, but through buccal drying. Intracerebroventricular injection of AngII motivated mudskippers to move into water and drink as with tetrapods. However, AngII primarily increased immunoreactive c-Fos at the hindbrain swallowing center where AngII receptors were expressed, as in other ray-finned fish, and such direct action on the forebrain was not found. Behavioural analyses showed that loss of buccal water on land by AngII-induced swallowing, by piercing holes in the opercula, or by water-absorptive gel placed in the cavity motivated mudskippers to move to water for refilling. Since sensory detection of water at the bucco-pharyngeal cavity like 'dry mouth' has recently been noted to regulate thirst in mammals, similar mechanisms seem to have evolved in distantly related species in order to solve osmoregulatory problems during terrestrialization.

  20. MERCURY EXPOSURE FROM FISH CONSUMPTION WITHIN THE JAPANESE AND KOREAN COMMUNITIES

    Science.gov (United States)

    Public health guidance pertaining to fish consumption requires that we be cognizant of the health concerns associated with eating contaminated fish and the nutritional benefits obtained from fish consumption. In doing so, a need exists for an improved understanding of the extent ...

  1. The Impacts of Recently Established Fish Populations on Zooplankton Communities in a Desert Spring, and Potential Conflicts in Setting Conservation Goals

    Directory of Open Access Journals (Sweden)

    Sujan M. Henkanaththegedara

    2015-01-01

    Full Text Available Desert springs, which harbor diverse and endemic invertebrate assemblages, are often used as refuge habitats for protected fish species. Additionally, many of these springs have been colonized by invasive fish species. However, the potential impacts of recently established fish populations on invertebrate communities in desert springs have been relatively unexplored. We conducted a mesocosm experiment to assess the impact of both protected and invasive fish on community structure of spring-dwelling invertebrates focusing on zooplankton. Experimental populations of spring zooplankton communities were established and randomly assigned to one of three treatments, (1 invasive western mosquitofish (Gambusia affinis; (2 endangered Mohave tui chub (Siphateles bicolor mohavensis; and (3 fishless control. Final populations of zooplankton and fish were sampled, sorted, identified and counted. The treatment differences of zooplankton communities were analyzed by comparing the densities of six major zooplankton taxa. Further, we performed nonmetric multidimensional scaling (NMDS to visualize the patterns of zooplankton community assemblages. Four zooplankton taxa, crustacean nauplii, cladocera, calanoid and cyclopoid copepods had significantly lower densities in fish treatments compared to fishless control. Overall, invasive mosquitofish caused a 78.8% reduction in zooplankton density, while Mohave tui chub caused a 65.1% reduction. Both protected and invasive fish had similar effects on zooplankton except for cladocerans where tui chub caused a 60% reduction in density, whereas mosquitofish virtually eliminated cladocerans. The presence of fish also had a significant effect on zooplankton community structure due to population declines and local extirpations presumably due to fish predation. This work shows that conservation-translocations undertaken to conserve protected fish species may impact spring-dwelling invertebrate communities, and such impacts are

  2. Testing for adaptive evolution of the female reproductive protein ZPC in mammals, birds and fishes reveals problems with the M7-M8 likelihood ratio test.

    Science.gov (United States)

    Berlin, Sofia; Smith, Nick G C

    2005-11-10

    Adaptive evolution appears to be a common feature of reproductive proteins across a very wide range of organisms. A promising way of addressing the evolutionary forces responsible for this general phenomenon is to test for adaptive evolution in the same gene but among groups of species, which differ in their reproductive biology. One can then test evolutionary hypotheses by asking whether the variation in adaptive evolution is consistent with the variation in reproductive biology. We have attempted to apply this approach to the study of a female reproductive protein, zona pellucida C (ZPC), which has been previously shown by the use of likelihood ratio tests (LRTs) to be under positive selection in mammals. We tested for evidence of adaptive evolution of ZPC in 15 mammalian species, in 11 avian species and in six fish species using three different LRTs (M1a-M2a, M7-M8, and M8a-M8). The only significant findings of adaptive evolution came from the M7-M8 test in mammals and fishes. Since LRTs of adaptive evolution may yield false positives in some situations, we examined the properties of the LRTs by several different simulation methods. When we simulated data to test the robustness of the LRTs, we found that the pattern of evolution in ZPC generates an excess of false positives for the M7-M8 LRT but not for the M1a-M2a or M8a-M8 LRTs. This bias is strong enough to have generated the significant M7-M8 results for mammals and fishes. We conclude that there is no strong evidence for adaptive evolution of ZPC in any of the vertebrate groups we studied, and that the M7-M8 LRT can be biased towards false inference of adaptive evolution by certain patterns of non-adaptive evolution.

  3. Community structure of age-0 fishes in paired mainstem and created shallow-water habitats in the Lower Missouri River

    Science.gov (United States)

    Starks, Trevor A.; Long, James M.; Dzialowski, Andrew R.

    2016-01-01

    Anthropogenic alterations to aquatic ecosystems have greatly reduced and homogenized riverine habitat, especially those used by larval and juvenile fishes. Creation of shallow-water habitats is used as a restoration technique in response to altered conditions in several studies globally, but only recently in the USA. In the summer of 2012, the U.S. Army Corps of Engineers sampled larval and juvenile fishes at six paired sites (mainstem and constructed chute shallow-water habitats) along a section of the Missouri River between Rulo, NE and St. Louis, MO, USA. From those samples, we enumerated and identified a total of 7622 fishes representing 12 families. Community responses of fishes to created shallow-water habitats were assessed by comparisons of species richness and diversity measures between paired sites and among sampling events. Shannon entropy measures were transformed, and gamma diversity (total diversity) was partitioned into two components, alpha (within community) and beta (between community) diversity using a multiplicative decomposition method. Mantel test results suggest site location, time of sampling event and habitat type were drivers of larval and juvenile community structure. Paired t-test results indicated little to no differences in beta diversity between habitat types; however, chute habitats had significantly higher alpha and gamma diversity as well as increased abundances of Asian carp larvae when compared with mainstem shallow-water habitat. Our results not only show the importance of created shallow-water habitat in promoting stream fish diversity but also highlight the role space and time may play in future restoration and management efforts. 

  4. Accurate detection of hierarchical communities in complex networks based on nonlinear dynamical evolution

    Science.gov (United States)

    Zhuo, Zhao; Cai, Shi-Min; Tang, Ming; Lai, Ying-Cheng

    2018-04-01

    One of the most challenging problems in network science is to accurately detect communities at distinct hierarchical scales. Most existing methods are based on structural analysis and manipulation, which are NP-hard. We articulate an alternative, dynamical evolution-based approach to the problem. The basic principle is to computationally implement a nonlinear dynamical process on all nodes in the network with a general coupling scheme, creating a networked dynamical system. Under a proper system setting and with an adjustable control parameter, the community structure of the network would "come out" or emerge naturally from the dynamical evolution of the system. As the control parameter is systematically varied, the community hierarchies at different scales can be revealed. As a concrete example of this general principle, we exploit clustered synchronization as a dynamical mechanism through which the hierarchical community structure can be uncovered. In particular, for quite arbitrary choices of the nonlinear nodal dynamics and coupling scheme, decreasing the coupling parameter from the global synchronization regime, in which the dynamical states of all nodes are perfectly synchronized, can lead to a weaker type of synchronization organized as clusters. We demonstrate the existence of optimal choices of the coupling parameter for which the synchronization clusters encode accurate information about the hierarchical community structure of the network. We test and validate our method using a standard class of benchmark modular networks with two distinct hierarchies of communities and a number of empirical networks arising from the real world. Our method is computationally extremely efficient, eliminating completely the NP-hard difficulty associated with previous methods. The basic principle of exploiting dynamical evolution to uncover hidden community organizations at different scales represents a "game-change" type of approach to addressing the problem of community

  5. The evolution of body size in extant groups of North American freshwater fishes: speciation, size distributions, and Cope's rule.

    Science.gov (United States)

    Knouft, Jason H; Page, Lawrence M

    2003-03-01

    Change in body size within an evolutionary lineage over time has been under investigation since the synthesis of Cope's rule, which suggested that there is a tendency for mammals to evolve larger body size. Data from the fossil record have subsequently been examined for several other taxonomic groups to determine whether they also displayed an evolutionary increase in body size. However, we are not aware of any species-level study that has investigated the evolution of body size within an extant continental group. Data acquired from the fossil record and data derived from the evolutionary relationships of extant species are not similar, with each set exhibiting both strengths and weaknesses related to inferring evolutionary patterns. Consequently, expectation that general trends exhibited in the fossil record will correspond to patterns in extant groups is not necessarily warranted. Using phylogenetic relationships of extant species, we show that five of nine families of North American freshwater fishes exhibit an evolutionary trend of decreasing body size. These trends result from the basal position of large species and the more derived position of small species within families. Such trends may be caused by the invasion of small streams and subsequent isolation and speciation. This pattern, potentially influenced by size-biased dispersal rates and the high percentage of small streams in North America, suggests a scenario that could result in the generation of the size-frequency distribution of North American freshwater fishes.

  6. Long-term effects of extreme weather events and eutrophication on the fish community of shallow Lake Peipsi (Estonia/Russia

    Directory of Open Access Journals (Sweden)

    Külli Kangur

    2013-06-01

    Full Text Available The fish kill in lake Peipsi (Estonia/Russia during the extraordinarily hot summer of 2010 evoked an investigation into the effects of environmental extremes and long-term eutrophication on the fish community of the lake. Current data on lake Peipsi indicate that temperature extremes and synergistic interactions with eutrophication have led to a radical restructuring of the fish community. Commercial landings of lake smelt, Osmerus eperlanus eperlanus m. spirinchus (Pallas, the previous dominant species of the fish community, have decreased dramatically since the 1930s, these declines being coupled with summer heat waves coinciding with low water levels. Gradual decline in smelt stock and catches was significantly related to a decline of near-bottom oxygen conditions and to a decrease in water transparency. The first documented fish kill in 1959 occurred only in the southern, most shallow and eutrophic lake (lake Pihkva. Recently, summer fish kill have become more frequent, involving larger areas of the lake. In addition to the cold-water species, e.g. smelt and vendace Coregonus albula (L., the abundance of bottom-dwelling fishes such as ruffe Gymnocephalus cernuus (L. and juvenile fish have significantly decreased after the 2010 heat wave probably due to hypoxia and warm water temperatures. This study showed that fish community structure in large shallow lakes may be very vulnerable to water temperature increases, especially temperature extremes in combination with eutrophication.

  7. Molecular evolution of myoglobin in the Tibetan Plateau endemic schizothoracine fish (Cyprinidae, Teleostei) and tissue-specific expression changes under hypoxia.

    Science.gov (United States)

    Qi, Delin; Chao, Yan; Zhao, Yongli; Xia, Mingzhe; Wu, Rongrong

    2018-04-01

    Myoglobin (Mb) is an oxygen-binding hemoprotein that was once thought to be exclusively expressed in oxidative myocytes of skeletal and cardiac muscle where it serves in oxygen storage and facilitates intracellular oxygen diffusion. In this study, we cloned the coding sequence of the Mb gene from four species, representing three groups, of the schizothoracine fish endemic to the Qinghai-Tibetan Plateau (QTP), then conducted molecular evolution analyses. We also investigated tissue expression patterns of Mb and the expression response to moderate and severe hypoxia at the mRNA and protein levels in a representative of the highly specialized schizothoracine fish species, Schizopygopsis pylzovi. Molecular evolution analyses showed that Mb from the highly specialized schizothoracine fish have undergone positive selection and one positively selected residue (81L) was identified, which is located in the F helix, close to or in contact with the heme. We present tentative evidence that the Mb duplication event occurred in the ancestor of the schizothoracine and Cyprininae fish (common carp and goldfish), and that the Mb2 paralog was subsequently lost in the schizothoracine fish. In S. pylzovi, Mb mRNA is expressed in various tissues with the exception of the intestine and gill, but all such tissues, including the liver, muscle, kidney, brain, eye, and skin, expressed very low levels of Mb mRNA (Tibetan Plateau fish.

  8. The Effects of Agricultural Land-use on Stream Fish and Invertebrate Communities and Food-web Structure.

    Science.gov (United States)

    North, C. A.; Fischer, R. U.

    2005-05-01

    Incorporating knowledge of the surrounding landscape can further the understanding of stream processes. This is particularly true in areas like the Midwest where human alteration of the landscape, such as conversion of natural cover types into cultivated row crops, is widespread. When assessing stream health, the composition and structure of biological communities themselves often are the best indicators of water quality. Previous work in Hurricane Creek (Coles and Cumberland Counties, IL) demonstrated significant differences in water chemistry and community metabolism between sites subject to differing intensities of farming in the upstream watershed. Our objective was to examine differences in fish and invertebrate communities at four sites along the stream representing varying degrees of agricultural land-use. Fish were sampled using electroseining techniques and invertebrates were collected using the 20-jab method in each of four seasons. Sites were compared using fish and invertebrate community metrics, including indices of biotic integrity (IBI, MBI). Stable isotope analyses were also performed to quantify differences in food-web structure in streams draining watersheds characterized by different degrees of agricultural land-use. This study improves understanding of how landscape alteration impacts stream biota and will facilitate more informed decisions concerning stream rehabilitation.

  9. A morphospace for reef fishes: elongation is the dominant axis of body shape evolution.

    Directory of Open Access Journals (Sweden)

    Thomas Claverie

    Full Text Available Tropical reef fishes are widely regarded as being perhaps the most morphologically diverse vertebrate assemblage on earth, yet much remains to be discovered about the scope and patterns of this diversity. We created a morphospace of 2,939 species spanning 56 families of tropical Indo-Pacific reef fishes and established the primary axes of body shape variation, the phylogenetic consistency of these patterns, and whether dominant patterns of shape change can be accomplished by diverse underlying changes. Principal component analysis showed a major axis of shape variation that contrasts deep-bodied species with slender, elongate forms. Furthermore, using custom methods to compare the elongation vector (axis that maximizes elongation deformation and the main vector of shape variation (first principal component for each family in the morphospace, we showed that two thirds of the families diversify along an axis of body elongation. Finally, a comparative analysis using a principal coordinate analysis based on the angles among first principal component vectors of each family shape showed that families accomplish changes in elongation with a wide range of underlying modifications. Some groups such as Pomacentridae and Lethrinidae undergo decreases in body depth with proportional increases in all body regions, while other families show disproportionate changes in the length of the head (e.g., Labridae, the trunk or caudal region in all combinations (e.g., Pempheridae and Pinguipedidae. In conclusion, we found that evolutionary changes in body shape along an axis of elongation dominates diversification in reef fishes. Changes in shape on this axis are thought to have immediate implications for swimming performance, defense from gape limited predators, suction feeding performance and access to some highly specialized habitats. The morphological modifications that underlie changes in elongation are highly diverse, suggesting a role for a range of

  10. A Morphospace for Reef Fishes: Elongation Is the Dominant Axis of Body Shape Evolution

    Science.gov (United States)

    Claverie, Thomas; Wainwright, Peter C.

    2014-01-01

    Tropical reef fishes are widely regarded as being perhaps the most morphologically diverse vertebrate assemblage on earth, yet much remains to be discovered about the scope and patterns of this diversity. We created a morphospace of 2,939 species spanning 56 families of tropical Indo-Pacific reef fishes and established the primary axes of body shape variation, the phylogenetic consistency of these patterns, and whether dominant patterns of shape change can be accomplished by diverse underlying changes. Principal component analysis showed a major axis of shape variation that contrasts deep-bodied species with slender, elongate forms. Furthermore, using custom methods to compare the elongation vector (axis that maximizes elongation deformation) and the main vector of shape variation (first principal component) for each family in the morphospace, we showed that two thirds of the families diversify along an axis of body elongation. Finally, a comparative analysis using a principal coordinate analysis based on the angles among first principal component vectors of each family shape showed that families accomplish changes in elongation with a wide range of underlying modifications. Some groups such as Pomacentridae and Lethrinidae undergo decreases in body depth with proportional increases in all body regions, while other families show disproportionate changes in the length of the head (e.g., Labridae), the trunk or caudal region in all combinations (e.g., Pempheridae and Pinguipedidae). In conclusion, we found that evolutionary changes in body shape along an axis of elongation dominates diversification in reef fishes. Changes in shape on this axis are thought to have immediate implications for swimming performance, defense from gape limited predators, suction feeding performance and access to some highly specialized habitats. The morphological modifications that underlie changes in elongation are highly diverse, suggesting a role for a range of developmental processes

  11. Follow-up trends of parasite community alteration in a marine fish after the Prestige oil-spill: shifting baselines?

    Science.gov (United States)

    Pérez-del-Olmo, A; Montero, F E; Raga, J A; Fernández, M; Kostadinova, A

    2009-01-01

    This study evaluates the follow-up trends in the composition and structure of the parasite communities in the marine sparid Boops boops after the Prestige oil-spill. A total of 400 fish comprising 11 seasonal samples was analyzed from three impacted localities on the Atlantic coast of Spain. A large number of parasite species was recovered only after the spill thus suggesting a substantial alteration of the marine food webs. Post-spill communities exhibited higher richness and abundance due to the significant changes in the abundance of the common species, the latter indicating accelerated parasite transmission rates. Multivariate analyses at two nested scales detected a directional trend in parasite community succession towards the pre-spill situation, however, with no full support for community recovery. The state of parasite communities in 2005-2006 may provide the new baseline data which can serve as a framework for quantifying the impact of potential future spills in the region.

  12. The evolution of the placenta drives a shift in sexual selection in livebearing fish

    NARCIS (Netherlands)

    Pollux, B.J.A.; Meredith, R.W.; Springer, M.S.; Garland, T.; Reznick, D.N.

    2014-01-01

    The evolution of the placenta from a non-placental ancestor causes a shift of maternal investment from pre- to post-fertilization, creating a venue for parent–offspring conflicts during pregnancy1, 2, 3, 4. Theory predicts that the rise of these conflicts should drive a shift from a reliance on

  13. Diel variation of fish community in sandy beaches of southeastern Brazil

    Directory of Open Access Journals (Sweden)

    Luiz Ricardo Gaelzer

    2008-03-01

    Full Text Available Fish living in coastal waters present behavior patterns ruled by environmental light levels. Diel variations in fish community structure were investigated at Arraial do Cabo surf zone (22º58'S, 42º01'W. From September/2001 to August/2002 monthly sampling consisted of 12 hauls of a beach seine during the day and at night at Praia dos Anjos, Praia Grande and Prainha beaches. Different temporal distribution patterns of the ichthyc community were recorded. At Praia dos Anjos, total richness was higher at night while the average number of species, CPUE, Margalef's richness and Shannon diversity were generally higher during the day. We believe that this pattern was caused by the displacement of some species such as Harengula clupeola,Trachinotus carolinus and Umbrina coroides at night to deeper areas searching for food or for predator avoidance. At Praia Grande and Prainha the average number of species, CPUE, richness and diversity indexes were generally higher at night with the dominant species H. clupeola, Pomatomus saltatrix and Sardinella brasiliensis. It is suggested that the main factor to diel variation is the protection against predators due to darkness, making visualization of the prey difficult, besides the presence of seasonal macroalgae beds at Prainha, which might function as a food area for piscivorous fishes due to the proximity of larger individuals in shallower water especially at night.Peixes que vivem em águas costeiras marinhas exibem modelos de comportamento que são regulados pelos níveis de luz do ambiente. A variação nictemeral na estrutura da comunidade de peixes de zona de arrebentação foi investigada na região de Arraial do Cabo (22º58'S, 42º01'W. Desetembro/2001 a agosto/2002 foram realizadas coletas mensais, sendo efetuadas 12 arrastos utilizando cerco de praia nos períodos diurnos e noturnos na Praia dos Anjos, Praia Grande e Prainha. Diferentes padrões de distribuição da comunidade ictíca foram

  14. The fish community of a small impoundment in upstate New York

    Science.gov (United States)

    McCoy, C. Mead; Madenjian, Charles P.; Adams, Jean V.; Harman, Willard N.

    2001-01-01

    Moe Pond is a dimictic impoundment with surface area of 15.6 ha, a mean depth of 1.8 m, and an unexploited fish community of only two species: brown bullhead (Ameiurus nebulosus) and golden shiner (Notemigonus crysoleucas). The age-1 and older brown bullhead population was estimated to be 4,057 individuals, based on the Schnabel capture-recapture method of population estimation. Density and biomass were respectively estimated at 260 individuals/ha and 13 kg/ha. Annual survival rate of age-2 through age-5 brown bullheads was estimated at 48%. The golden shiner length-frequency distribution was unimodal with modal length of 80 mm and maximum total length of 115 m. The golden shiner population estimate was 7,154 individuals, based on seven beach seine haul replicate samples; the density and biomass were 686 shiners/ha and 5 kg/ha, respectively. This study provides an information baseline that may be useful in understanding food web interactions and whole-pond nutrient flux.

  15. Follow-up trends of parasite community alteration in a marine fish after the Prestige oil-spill: Shifting baselines?

    International Nuclear Information System (INIS)

    Perez-del-Olmo, A.; Montero, F.E.; Raga, J.A.; Fernandez, M.; Kostadinova, A.

    2009-01-01

    This study evaluates the follow-up trends in the composition and structure of the parasite communities in the marine sparid Boops boops after the Prestige oil-spill. A total of 400 fish comprising 11 seasonal samples was analyzed from three impacted localities on the Atlantic coast of Spain. A large number of parasite species was recovered only after the spill thus suggesting a substantial alteration of the marine food webs. Post-spill communities exhibited higher richness and abundance due to the significant changes in the abundance of the common species, the latter indicating accelerated parasite transmission rates. Multivariate analyses at two nested scales detected a directional trend in parasite community succession towards the pre-spill situation, however, with no full support for community recovery. The state of parasite communities in 2005-2006 may provide the new baseline data which can serve as a framework for quantifying the impact of potential future spills in the region. - Prestige oil-spill impact on parasite communities in the sparid fish B. boops

  16. Amphidromy links a newly documented fish community of continental Australian streams, to oceanic islands of the west Pacific.

    Directory of Open Access Journals (Sweden)

    Paul A Thuesen

    Full Text Available BACKGROUND: Indo-Pacific high island streams experience extreme hydrological variation, and are characterised by freshwater fish species with an amphidromous life history. Amphidromy is a likely adaptation for colonisation of island streams following stochastic events that lead to local extirpation. In the Wet Tropics of north-eastern Australia, steep coastal mountain streams share similar physical characteristics to island systems. These streams are poorly surveyed, but may provide suitable habitat for amphidromous species. However, due to their ephemeral nature, common non-diadromous freshwater species of continental Australia are unlikely to persist. Consequently, we hypothesise that coastal Wet Tropics streams are faunally more similar, to distant Pacific island communities, than to nearby faunas of large continental rivers. METHODS/PRINCIPAL FINDINGS: Surveys of coastal Wet Tropics streams recorded 26 species, 10 of which are first records for Australia, with three species undescribed. This fish community is unique in an Australian context in that it contains mostly amphidromous species, including sicydiine gobies of the genera Sicyopterus, Sicyopus, Smilosicyopus and Stiphodon. Species presence/absence data of coastal Wet Tropics streams were compared to both Wet Tropics river networks and Pacific island faunas. ANOSIM indicated the fish fauna of north-eastern Australian coastal streams were more similar to distant Pacific islands (R = 0.76, than to nearby continental rivers (R = 0.98. MAIN CONCLUSIONS/SIGNIFICANCE: Coastal Wet Tropics streams are faunally more similar to distant Pacific islands (79% of species shared, than to nearby continental fauna due to two factors. First, coastal Wet Tropics streams lack many non-diadromous freshwater fish which are common in nearby large rivers. Second, many amphidromous species found in coastal Wet Tropics streams and Indo-Pacific islands remain absent from large rivers of the Wet Tropics

  17. Fish community structure in freshwater karstic water bodies of the Sian Ka'an Reserve in the Yucatan peninsula, Mexico

    Science.gov (United States)

    Zambrano, L.; Vazquez-Dominguez, E.; Garcia-Bedoya, D.; Loftus, W.F.; Trexler, J.C.

    2006-01-01

    We evaluated the relationship between limnetic characteristics and fish community structure (based on species richness, abundance and individual size) in contrasting but interconnected inland aquatic habitats of freshwater karstic wetlands in the Yucatan peninsula, Mexico. In the western hemisphere, freshwater karstic wetlands are found in south-eastern Mexico, northern Belize, western Cuba, Andros Island, Bahamas and the Everglades of southern Florida. Only in the Everglades have fish communities been well described. Karstic wetlands are typically oligotrophic because calcium carbonate binds phosphorus, making it relatively unavailable for plants. Fourteen permanent and seasonally flooded water bodies were sampled in both wet and dry seasons in Sian Ka'an Biosphere Reserve, in the Mexican state of Quintana Roo. Water systems were divided by morphology in four groups: cenotes with vegetation (CWV), cenotes without vegetation (CNV), wetlands (WTL), and temporal cenotes (TPC). Discriminant analysis based on physical characteristics such as turbidity, temperature, depth and oxygen confirmed that these habitats differed in characteristics known to influence fish communities. A sample-based rarefaction test showed that species richness was significantly different between water systems groups, showing that WTL and CWV had higher richness values than CNV and TPC. The most abundant fish families, Poeciliidae, Cichlidae and Characidae, differed significantly in average size among habitats and seasons. Seasonal and inter-annual variation, reflecting temporal variation in rainfall, strongly influenced the environmental differences between shallow and deep habitats, which could be linked to fish size and life cycles. Five new records of species were found for the reserve, and one new record for Quintana Roo state. ?? 2006 by Verlag Dr. Friedrich Pfeil.

  18. PACAP system evolution and its role in melanophore function in teleost fish skin.

    Science.gov (United States)

    Cardoso, João C R; Félix, Rute C; Martins, Rute S T; Trindade, Marlene; Fonseca, Vera G; Fuentes, Juan; Power, Deborah M

    2015-08-15

    Pituitary adenylate cyclase-activating polypeptide (PACAP) administered to tilapia melanophores ex-vivo causes significant pigment aggregation and this is a newly identified function for this peptide in fish. The G-protein coupled receptors (GPCRs), adcyap1r1a (encoding Pac1a) and vipr2a (encoding Vpac2a), are the only receptors in melanophores with appreciable levels of expression and are significantly (p < 0.05) down-regulated in the absence of light. Vpac2a is activated exclusively by peptide histidine isoleucine (PHI), which suggests that Pac1a mediates the melanin aggregating effect of PACAP on melanophores. Paradoxically activation of Pac1a with PACAP caused a rise in cAMP, which in fish melanophores is associated with melanin dispersion. We hypothesise that the duplicate adcyap1ra and vipr2a genes in teleosts have acquired a specific role in skin and that the melanin aggregating effect of PACAP results from the interaction of Pac1a with Ramp that attenuates cAMP-dependent PKA activity and favours the Ca(2+)/Calmodulin dependent pathway. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  19. Fish population studies using parasites from the Southeastern Pacific Ocean: considering host population changes and species body size as sources of variability of parasite communities.

    Science.gov (United States)

    George-Nascimento, Mario; Oliva, Marcelo

    2015-01-01

    Research using parasites in fish population studies in the South Eastern Pacific (SEP) is summarized. There are 27 such studies (snapshots mainly) in single host species sampled at different geographic localities and at somewhat similar times. They have been devoted mainly to economically important species, though others on coastal and intertidal fish or on less- or non-commercial species provide insights on scales of temporal and spatial variation of parasite infracommunities. Later, we assess whether the probability of harbouring parasites depends on the host species body size. Our results indicate that a stronger tool for fish population studies may be developed under regular (long term) scrutiny of parasite communities, especially of small fish host species, due to their larger variability in richness, abundance and total biomass, than in large fish species. Finally, it might also be necessary to consider the effects of fishing on parasite communities as well as the natural oscillations (coupled or not) of host and parasite populations.

  20. Impact of coastal defence structures (tetrapods) on a demersal hard-bottom fish community in the southern North Sea.

    Science.gov (United States)

    Wehkamp, Stephanie; Fischer, Philipp

    2013-02-01

    In the coming decades, artificial defence structures will increase in importance worldwide for the protection of coasts against the impacts of global warming. However, the ecological effects of such structures on the natural surroundings remain unclear. We investigated the impact of experimentally introduced tetrapod fields on the demersal fish community in a hard-bottom area in the southern North Sea. The results indicated a significant decrease in fish abundance in the surrounding area caused by migration effects towards the artificial structures. Diversity (HB) and evenness (E) values exhibited greater variation after the introduction of the tetrapods. Additionally, a distinct increase in young-of-the-year (YOY) fish was observed near the structures within the second year after introduction. We suggest that the availability of adequate refuges in combination with additional food resources provided by the artificial structures has a highly species-specific attraction effect. However, these findings also demonstrate that our knowledge regarding the impact of artificial structures on temperate fish communities is still too limited to truly understand the ecological processes that are initiated by the introduction of artificial structures. Long-term investigations and additional experimental in situ work worldwide will be indispensable for a full understanding of the mechanisms by which coastal defence structures interact with the coastal environment. Copyright © 2012 Elsevier Ltd. All rights reserved.

  1. Life on the edge: hydrogen sulfide and the fish communities of a Mexican cave and surrounding waters.

    Science.gov (United States)

    Tobler, Michael; Schlupp, Ingo; Heubel, Katja U; Riesch, Rüdiger; de León, Francisco J García; Giere, Olav; Plath, Martin

    2006-12-01

    Most eucaryotic organisms classified as living in an extreme habitat are invertebrates. Here we report of a fish living in a Mexican cave (Cueva del Azufre) that is rich in highly toxic H(2)S. We compared the water chemistry and fish communities of the cave and several nearby surface streams. Our study revealed high concentrations of H(2)S in the cave and its outflow (El Azufre). The concentrations of H(2)S reach more than 300 muM inside the cave, which are acutely toxic for most fishes. In both sulfidic habitats, the diversity of fishes was heavily reduced, and Poecilia mexicana was the dominant species indicating that the presence of H(2)S has an all-or-none effect, permitting only few species to survive in sulfidic habitats. Compared to habitats without H(2)S, P. mexicana from the cave and the outflow have a significantly lower body condition. Although there are microhabitats with varying concentrations of H(2)S within the cave, we could not find a higher fish density in areas with lower concentrations of H(2)S. We discuss that P. mexicana is one of the few extremophile vertebrates. Our study supports the idea that extreme habitats lead to an impoverished species diversity.

  2. Effects of mammalian competitors on the ecology and evolution of communities

    International Nuclear Information System (INIS)

    Brown, J.H.

    1978-01-01

    Competitive interactions with other species influence the abundance, distribution, and evolution of small mammal populations. In some cases, closely related species exclude each other from local habitats by direct, aggressive interference; in others, they coexist by differentially exploiting limiting resources and avoiding interspecific aggression. Selection to reduce competition has resulted in the evolution of differences in resource utilization among coexisting species. Regular patterns of character displacement are particularly evident in communities of closely related granivores, frugivores, and carnivores. Recent evidence suggests that small mammals compete significantly with distantly related taxa of vertebrates and invertebrates. Such interactions may have important consequences for the structure and function of natural ecosystems

  3. Factors associated with dropout in a long term observational cohort of fishing communities around lake Victoria, Uganda.

    Science.gov (United States)

    Abaasa, Andrew; Asiki, Gershim; Mpendo, Juliet; Levin, Jonathan; Seeley, Janet; Nielsen, Leslie; Ssetaala, Ali; Nanvubya, Annet; De Bont, Jan; Kaleebu, Pontiano; Kamali, Anatoli

    2015-12-24

    Fishing communities are potentially suitable for Human immunodeficiency virus (HIV) efficacy trials due to their high risk profile. However, high mobility and attrition could decrease statistical power to detect the impact of a given intervention. We report dropout and associated factors in a fisher-folk observational cohort in Uganda. Human immunodeficiency virus-uninfected high-risk volunteers aged 13-49 years living in five fishing communities around Lake Victoria were enrolled and followed every 6 months for 18 months at clinics located within each community. Volunteers from two of the five communities had their follow-up periods extended to 30 months and were invited to attend clinics 10-40 km (km) away from their communities. Human immunodeficiency virus counseling and testing was provided, and data on sexual behaviour collected at all study visits. Study completion was defined as completion of 18 or 30 months or visits up to the date of sero-conversion and dropout as missing one or more visits. Discrete time survival models were fitted to find factors independently associated with dropout. A total of 1000 volunteers (55% men) were enrolled. Of these, 91.9% completed 6 months, 85.2% completed 12 months and 76.0% completed 18 months of follow-up. In the two communities with additional follow-up, 76.9% completed 30 months. In total 299 (29.9%) volunteers missed at least one visit (dropped out). Dropout was independently associated with age (volunteers aged 13-24 being most likely to dropout), gender [men being more likely to dropout than women [adjusted hazard ratio (aHR) 1.4; 95% confidence interval (CI) 1.1-1.8)], time spent in the fishing community (those who stayed dropout), History of marijuana use (users being more likely to dropout than non-users [1.7; (1.2-2.5)], ethnicity (non-Baganda being more likely to dropout than Baganda [1.5; (1.2-1.9)], dropout varied between the five fishing communities, having a new sexual partner in the previous 3 months [1

  4. A preliminary analysis of the fish communities' dynamic in the Slovak section of the Danube in last two decades

    International Nuclear Information System (INIS)

    Jakubcinova, K.; Kovac, V.

    2015-01-01

    The Danube is the river with the highest richness of fish species (102 species reported) in Europe. Nevertheless, it also faces various human pressures with serious negative impacts on its ecosystems, including fish communities. In this work, data from The Joint Danube Survey 2 (2007), The Joint Danube Survey 3 (2013) and the Gabcikovo Hydroelectric Scheme Monitoring (GHS) (1991-2011) were analyser briefly. The Fish Index of Slovakia (FIS) was used to compare the Cunovo - Szap section, which is under the influence of GHS, with the section of Danube in Bratislava, which is upstream to GHS. Significantly lower values of FIS indicate the negative impact of GHS on local fish communities. However invasive species have also impacted fish communities negatively. (authors)

  5. Fishes of the Vitória-Trindade Chain: Biodiversity, Biogeography and Evolution

    OpenAIRE

    Pinheiro, Hudson Tercio

    2016-01-01

    Studies on the ecology and biogeography of seamounts and oceanic islands have advanced substantially in the last 60 years. However, few seamounts have been scientifically characterized, with basic aspects of their biodiversity still unknown and many hypotheses not empirically tested. Consequently, the role of seamounts in the evolution for marine species is still unclear. In the south Atlantic, the Vitória-Trindade Chain (VTC) extends ca. 1,200 km offshore the Brazilian coast. For a long time...

  6. Evolution of microhabitat association and morphology in a diverse group of cryptobenthic coral reef fishes (Teleostei: Gobiidae: Eviota)

    KAUST Repository

    Tornabene, Luke; Ahmadia, Gabby N.; Berumen, Michael L.; Smith, David J.; Jompa, Jamaluddì n; Pezold, Frank L.

    2013-01-01

    Gobies (Teleostei: Gobiidae) are an extremely diverse and widely distributed group and are the second most species rich family of vertebrates. Ecological drivers are key to the evolutionary success of the Gobiidae. However, ecological and phylogenetic data are lacking for many diverse genera of gobies. Our study investigated the evolution of microhabitat association across the phylogeny of 18 species of dwarfgobies (genus Eviota), an abundant and diverse group of coral reef fishes. In addition, we also explore the evolution of pectoral fin-ray branching and sensory head pores to determine the relationship between morphological evolution and microhabitat shifts. Our results demonstrate that Eviota species switched multiple times from a facultative hard-coral association to inhabiting rubble or mixed sand/rubble habitat. We found no obvious relationship between microhabitat shifts and changes in pectoral fin-ray branching or reduction in sensory pores, with the latter character being highly homoplasious throughout the genus. The relative flexibility in coral-association in Eviota combined with the ability to move into non-coral habitats suggests a genetic capacity for ecological release in contrast to the strict obligate coral-dwelling relationship commonly observed in closely related coral gobies, thus promoting co-existence through fine scale niche partitioning. The variation in microhabitat association may facilitate opportunistic ecological speciation, and species persistence in the face of environmental change. This increased speciation opportunity, in concert with a high resilience to extinction, may explain the exceptionally high diversity seen in Eviota compared to related genera in the family. © 2012 Elsevier Inc.

  7. HIV infection in fishing communities of Lake Victoria Basin of Uganda--a cross-sectional sero-behavioral survey.

    Directory of Open Access Journals (Sweden)

    Alex Opio

    Full Text Available BACKGROUND: Uganda's first AIDS case was reported in a fishing village. Thereafter, due to varying risk factors, the epidemic spread heterogeneously to all regions, with some populations more affected. Given the recent rising trends in HIV infection in Uganda, it is crucial to know the risk factors in different populations. The aim of this study was to determine the prevalence and risk factors of HIV infection among fishing communities. METHODOLOGY: A cross-sectional survey of 46 fishing communities was conducted in 2010. Following written consent, 911 randomly selected respondents age 15-59 years were interviewed and gave blood for HIV testing. HIV testing was conducted in the field and central laboratory according to national algorithm. Survey protocol was approved by the Science and Ethics Committee of Uganda Virus Research Institute, and cleared by Uganda National Council for Science and Technology. Data was captured by EPIINFO and statistical analysis done in SPSS. FINDINGS: Overall HIV prevalence was 22%; there was no difference by sex (x (2 test, p>0.05. Association with HIV infection was determined by x (2 test, p<0.5. Never married respondents had lower HIV prevalence (6.2% than the ever married (24.1%. HIV prevalence was lower in younger respondents, age 15-24 years (10.8% than in age group 25 years and above (26.1%. Muslims had lower HIV prevalence (14.4% than Christians (25.2%. HIV prevalence was higher among respondents reporting 3 or more lifetime sexual partners (25.3% than in those reporting less numbers (10.8%. HIV prevalence was higher among uncircumcised men (27% than in circumcised men (11%. Multivariate analysis identified 4 risk factors for HIV infection; age, religion, ever condom use and number of lifetime sexual partners. CONCLUSIONS: HIV prevalence in the surveyed communities was three times higher than of general population. This underscores the need for tailor made HIV combination prevention interventions targeting

  8. Fish community response to the longitudinal environmental gradient in Czech deep-valley reservoirs: Implications for ecological monitoring and management.

    Czech Academy of Sciences Publication Activity Database

    Vašek, Mojmír; Prchalová, Marie; Říha, Milan; Blabolil, Petr; Čech, Martin; Draštík, Vladislav; Frouzová, Jaroslava; Jůza, Tomáš; Kratochvíl, Michal; Muška, Milan; Peterka, Jiří; Sajdlová, Zuzana; Šmejkal, Marek; Tušer, Michal; Vejřík, Lukáš; Znachor, Petr; Mrkvička, Tomáš; Seďa, Jaromír; Kubečka, Jan

    2016-01-01

    Roč. 63, April (2016), s. 219-230 ISSN 1470-160X R&D Projects: GA MŠk(CZ) EE2.3.20.0204; GA ČR(CZ) GA15-01625S Institutional support: RVO:60077344 Keywords : ecological quality * eutrophication * fish community * gradients * water management Subject RIV: EH - Ecology, Behaviour Impact factor: 3.898, year: 2016

  9. Understanding the Spatio-Temporal Response of Coral Reef Fish Communities to Natural Disturbances: Insights from Beta-Diversity Decomposition.

    Science.gov (United States)

    Lamy, Thomas; Legendre, Pierre; Chancerelle, Yannick; Siu, Gilles; Claudet, Joachim

    2015-01-01

    Understanding how communities respond to natural disturbances is fundamental to assess the mechanisms of ecosystem resistance and resilience. However, ecosystem responses to natural disturbances are rarely monitored both through space and time, while the factors promoting ecosystem stability act at various temporal and spatial scales. Hence, assessing both the spatial and temporal variations in species composition is important to comprehensively explore the effects of natural disturbances. Here, we suggest a framework to better scrutinize the mechanisms underlying community responses to disturbances through both time and space. Our analytical approach is based on beta diversity decomposition into two components, replacement and biomass difference. We illustrate this approach using a 9-year monitoring of coral reef fish communities off Moorea Island (French Polynesia), which encompassed two severe natural disturbances: a crown-of-thorns starfish outbreak and a hurricane. These disturbances triggered a fast logistic decline in coral cover, which suffered a 90% decrease on all reefs. However, we found that the coral reef fish composition remained largely stable through time and space whereas compensatory changes in biomass among species were responsible for most of the temporal fluctuations, as outlined by the overall high contribution of the replacement component to total beta diversity. This suggests that, despite the severity of the two disturbances, fish communities exhibited high resistance and the ability to reorganize their compositions to maintain the same level of total community biomass as before the disturbances. We further investigated the spatial congruence of this pattern and showed that temporal dynamics involved different species across sites; yet, herbivores controlling the proliferation of algae that compete with coral communities were consistently favored. These results suggest that compensatory changes in biomass among species and spatial

  10. Understanding the cultures of fishing communities: a key to fisheries management and food security

    National Research Council Canada - National Science Library

    McGoodwin, James R

    2001-01-01

    .... The paper suggests methods that might help fisheries managers to obtain reliable information about fishing cultures in an ethical manner, including the rapid acquisition of important information...

  11. Detection of the spatiotemporal trends of mercury in Lake Erie fish communities: a Bayesian approach.

    Science.gov (United States)

    Azim, M Ekram; Kumarappah, Ananthavalli; Bhavsar, Satyendra P; Backus, Sean M; Arhonditsis, George

    2011-03-15

    The temporal trends of total mercury (THg) in four fish species in Lake Erie were evaluated based on 35 years of fish contaminant data. Our Bayesian statistical approach consists of three steps aiming to address different questions. First, we used the exponential and mixed-order decay models to assess the declining rates in four intensively sampled fish species, i.e., walleye (Stizostedion vitreum), yellow perch (Perca flavescens), smallmouth bass (Micropterus dolomieui), and white bass (Morone chrysops). Because the two models postulate monotonic decrease of the THg levels, we included first- and second-order random walk terms in our statistical formulations to accommodate nonmonotonic patterns in the data time series. Our analysis identified a recent increase in the THg concentrations, particularly after the mid-1990s. In the second step, we used double exponential models to quantify the relative magnitude of the THg trends depending on the type of data used (skinless-boneless fillet versus whole fish data) and the fish species examined. The observed THg concentrations were significantly higher in skinless boneless fillet than in whole fish portions, while the whole fish portions of walleye exhibited faster decline rates and slower rates of increase relative to the skinless boneless fillet data. Our analysis also shows lower decline rates and higher rates of increase in walleye relative to the other three fish species examined. The food web structural shifts induced by the invasive species (dreissenid mussels and round goby) may be associated with the recent THg trends in Lake Erie fish.

  12. Environmental monitoring of the La Grande complex (2003-2004) : evolution of mercury levels in the flesh of fish; Reseau de suivi environnemental du complexe La Grande (2003-2004) : evolution du mercure dans la chair des poissons

    Energy Technology Data Exchange (ETDEWEB)

    Therrien, J. [Genivar SEC, Quebec, PQ (Canada); Schetagne, R. [Hydro-Quebec Production, Baie-Comeau, PQ (Canada)

    2005-11-15

    The results of surveys conducted to assess the duration of temporary mercury levels in piscivorous species in the La Grande Complex were presented. A 2003 survey conducted in the easter sector and a 2004 survey conducted in the western sector of the complex showed that for non-piscivorous fishes of standardized length, a return to mean natural mercury levels will be achieved between 10 and 20 years after impounding. For piscivorous fishes, the evolution pattern of the mean mercury levels suggested that a return to background levels will occur after 20 to 30 years. Mercury levels for northern pike in the Robert-Bourassa Reservoir are expected to return to normal levels after 30 to 35 years. The surveys indicated that mean mercury levels in non-piscivorous fishes were often higher immediately below the La Grande generating stations. Similar observations were made for northern pike and lake trout downstream of the generating stations in the eastern sector of the complex. Mean mercury levels were significantly higher for fishes in the complex than fishes in the natural lakes of the region. Results of the surveys suggested that additional consumption restrictions for piscivorous fishes in the reservoirs are needed. Consumption guidelines for varieties of non-piscivorous and piscivorous fishes from the complex were included.

  13. The Influence of Community Management Agreements on Household Economic Strategies : Cattle Grazing and Fishing Agreements on the Lower Amazon Floodplain

    Directory of Open Access Journals (Sweden)

    David G. McGrath

    2007-10-01

    Full Text Available While the organizational dynamics of collective management systems have received much attention, relatively little work has focused on how households adapt their economic strategies in response to collective management regulations that impose constraints on the range of options available to households. In this paper we investigate the evolving interaction between household management strategies and collective management regulations for one or both of two ecologically interdependent floodplain resources, lake fisheries and seasonally inundated grasslands. Smallholder management strategies involve varying combinations of three main activities each associated with one of three main floodplain habitats: annual cropping on river levees, cattle ranching on natural grasslands and fishing in lakes. These three activities play complementary roles in the household economy. Annual cropping is both subsistence and market oriented, with cash from crop sales often invested in purchase of cattle. Fishing, in addition to providing animal protein, generates income for household purchases while crops are growing. Cattle ranching is the main savings strategy for smalholders, providing funds for family emergencies and capital investments. Despite the fertility of soils and the higher productivity per hectare of fishing, cattle ranching has expanded steadily on the floodplain at the expense of farming and fishing. Over the last two decades, communities throughout the Amazon floodplain have developed and implemented collective agreements to regulate access to and use of local lake fisheries. Depending on the measures included, the impact of these agreements on household management strategies can range from negligible to highly significant, requiring major adjustments to compensate for reduced fishing income. Expansion of smallholder cattle ranching has taken advantage of unregulated access to community grasslands. Unregulated access to community grasslands has been a

  14. Evolution in a Community Context: On Integrating Ecological Interactions and Macroevolution.

    Science.gov (United States)

    Weber, Marjorie G; Wagner, Catherine E; Best, Rebecca J; Harmon, Luke J; Matthews, Blake

    2017-04-01

    Despite a conceptual understanding that evolution and species interactions are inextricably linked, it remains challenging to study ecological and evolutionary dynamics together over long temporal scales. In this review, we argue that, despite inherent challenges associated with reconstructing historical processes, the interplay of ecology and evolution is central to our understanding of macroevolution and community coexistence, and cannot be safely ignored in community and comparative phylogenetic studies. We highlight new research avenues that foster greater consideration of both ecological and evolutionary dynamics as processes that occur along branches of phylogenetic trees. By promoting new ways forward using this perspective, we hope to inspire further integration that creatively co-utilizes phylogenies and ecological data to study eco-evolutionary dynamics over time and space. Copyright © 2017 Elsevier Ltd. All rights reserved.

  15. Baseline assessment of fish and benthic communities of the Flower Garden Banks (2010 - present) using remotely operated vehicle (ROV) survey methods: 2011

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The proposed work develop baseline information on fish and benthic communities within the Flower Garden Banks National Marine Sanctuary (FGBNMS). Surveys will employ...

  16. Assessment methodology for new cooling lakes. Volume 2. Development of empirical multivariate relationships for evaluating fish communities in new cooling lakes. Final report

    International Nuclear Information System (INIS)

    Grieb, T.M.; Porcella, D.B.; Ginn, T.C.; Lorenzen, M.W.

    1983-02-01

    Numerical classification techniques were used to define groups of lakes with distinct fish community attributes. Simple linear and multiple regression were then used to identify the important environmental variables affecting the fish communities. Next, the multivariate statistical technique of discriminant analysis was tested and shown to predict the groups of lakes (defined in the initial step of classification) using the identified environmental variables. Classification equations derived in the discriminant analysis enable the user to predict fish community characteristics of a new lake. The equations combine the information from nine limnological parameters into a single index of classification. Based on the value of this index, the lake is classified into one of four distinct groups. The fishery characteristics of the indicated group are then used to predict fish community structure and recreational fishery use. Angler-use estimates for the group are used to project multiple use benefits

  17. Biogeographic characterization of fish and benthic communities, St Croix, US Virgin Islands 2012-05-07 to 2012-05-18 (NODC Accession 0125237)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Reef fish populations are a conspicuous and essential component of USVI coral reef ecosystems. Yet despite their importance, striking population and community level...

  18. Evolution of hypothalamus-pituitary growth axis among fish, amphibian, birds and mammals

    Directory of Open Access Journals (Sweden)

    Moaeen-Ud-Din M.

    2015-01-01

    Full Text Available Hypothalamus-pituitary growth axis (HP growth axis regulates animal growth and development in pre-natal and post natal life governed by many factors. However, until recently, the evolutionary history of this axis among lineages is not understood. Aim of the present study was to understand the major events in evolution and evolutionary history and trend of HP growth axis. The diversity among Homo sapience, Mus musculus, Rattus norvegicus, Gallus gallus, Danio rerio and Xenopus laevis was determined for genes involved in HP growth axis in current study. Sequences of HP growth axis genes were retrieved from NCBI (http://www.ncbi.nlm.nih.gov/. Nucleotide diversity using Kimura’s two-parameter method; codon-based test of positive selection using the Nei-Gojobori; equality of evolutionary rate with Tajima's relative rate test and phylogenetic history using the RelTime method were estimated in MEGA6. Estimates of the coefficients of evolutionary differentiation based on nucleotides and amino acids substitution patterns of HP growth axis genes showed contrasting evolutionary patterns among the lineages. The results demonstrated that although these genes might have crucial functional roles in each of the species, however, their sequence divergence did not necessarily reflect similar molecular evolution among the species. Codon-based test of positive selection revealed that Human vs Mouse, Chicken vs Rat, Human vs Rat and Mouse vs Rat had similar and higher non synonymous substitutions (P > 0.05. Higher rate of non-synonymous substitutions at similar orthologs level among species indicated a similar positive selection pressure in these species. Results for relative rate test assessed with the chi-squared test showed difference on unique mutations among lineages at synonymous and non synonymous sites except Chicken vs Mouse, Human vs Mouse, Chicken vs Rat, Human vs Rat and Mouse vs Rat. This indicated that the mutagenic process that generates

  19. Perceptions of HIV and Safe Male Circumcision in High HIV Prevalence Fishing Communities on Lake Victoria, Uganda.

    Directory of Open Access Journals (Sweden)

    Paul E Nevin

    Full Text Available In 2010, the Uganda Ministry of Health introduced its Safe Male Circumcision (SMC strategy for HIV prevention with the goal of providing 4.2 million voluntary medical male circumcisions by 2015. Fishing communities, where HIV prevalence is approximately 3-5 times higher than the national average, have been identified as a key population needing targeted HIV prevention services by the National HIV Prevention Strategy. This study aimed to understand perceptions of HIV and identify potential barriers and facilitators to SMC in fishing communities along Lake Victoria.We conducted 8 focus group discussions, stratified by sex and age, with 67 purposefully sampled participants in 4 communities in Kalangala District, Uganda.There was universal knowledge of the availability of SMC services, but males reported high uptake in the community while females indicated that it is low. Improved hygiene, disease prevention, and improved sexual performance and desirability were reported facilitators. Barriers included a perceived increase in SMC recipients' physiological libido, post-surgical abstinence, lost income during convalescence, and lengthier recovery due to occupational hazards. Both males and females reported concerns about spousal fidelity during post-SMC abstinence. Reported misconceptions and community-held cultural beliefs include fear that foreskins are sold after their removal, the belief that a SMC recipient's first sexual partner after the procedure should not be his spouse, and the belief that vaginal fluids aid circumcision wound healing.Previous outreach efforts have effectively reached these remote communities, where availability and health benefits of SMC are widely understood. However, community-specific intervention strategies are needed to address the barriers identified in this study. We recommend the development of targeted counseling, outreach, and communication strategies to address barriers, misconceptions, and community-held beliefs

  20. Cormorant predation overlaps with fish communities and commercial-fishery interest in a Swedish lake

    DEFF Research Database (Denmark)

    Ovegård, K. M.; Öhman, K.; Mikkelsen, Jørgen Skole

    2017-01-01

    The increase of the fish-eating cormorant (Phalacrocorax carbo sinensis) in Europe has resulted in conflicts with fisheries. In Lake Roxen, Sweden, cormorants are blamed for causing a decrease in fishery catches. To study and describe the potential effects that cormorants may have had on fish in ...

  1. Fish community of a small, temperate, urban river in South Africa ...

    African Journals Online (AJOL)

    Catches were comprised of indigenous freshwater, marine migrant and alien fishes. Marine migrant fishes, including catadromous species dependent on freshwater for early life-history strategies, were significantly affected by instream barriers which prohibited upstream migration of all species except Anguilla mossambica.

  2. Impact of an oceanic port (Sines, Portugal on the fish community

    Directory of Open Access Journals (Sweden)

    Nuno Mamede

    2015-10-01

    These results suggest that this port may provide favorable conditions for the occurrence of a greater fish diversity and abundance than outside areas, particularly for some species that live in subtidal rocky substrates. Recreational and commercial fishing interdiction, in place in most areas of this port for several years, may be responsible for these patterns.

  3. Offshore windfarms and their impact on fish abundance and community structure

    DEFF Research Database (Denmark)

    Stenberg, Claus; Dinesen, Grete E.; Deurs, Mikael van

    2012-01-01

    Deployment of offshore windfarms (OWF) is rapidly expanding. A before–after control impact (BACI) approach was used to study the impact of one of the world’s largest offshore windfarms (Horns Rev Offshore Windfarm) on fish assemblages and species diversity. Fish were generally more abundant in th...

  4. Modeling fish community dynamics in Florida Everglades: Role of temperature variation

    Science.gov (United States)

    Al-Rabai'ah, H. A.; Koh, H. L.; DeAngelis, Donald L.; Lee, Hooi-Ling

    2002-01-01

    Temperature variation is an important factor in Everglade wetlands ecology. A temperature fluctuation from 17°C to 32°C recorded in the Everglades may have significant impact on fish dynamics. The short life cycles of some of Everglade fishes has rendered this temperature variation to have even more impacts on the ecosystem. Fish population dynamic models, which do not explicitly consider seasonal oscillations in temperature, may fail to describe the details of such a population. Hence, a model for fish in freshwater marshes of the Florida Everglades that explicitly incorporates seasonal temperature variations is developed. The model's main objective is to assess the temporal pattern of fish population and densities through time subject to temperature variations. Fish population is divided into 2 functional groups (FGs) consisting of small fishes; each group is subdivided into 5-day age classes during their life cycles. Many governing sub-modules are set directly or indirectly to be temperature dependent. Growth, fecundity, prey availability, consumption rates and mortality are examples. Several mortality sub-modules are introduced in the model, of which starvation mortality is set to be proportional to the ratio of prey needed to prey available at that particular time step. As part of the calibration process, the model is run for 50 years to ensure that fish densities do not go to extinction, while the simulation period is about 8 years.

  5. Long-term effects of an offshore wind farm in the North Sea on fish communities

    DEFF Research Database (Denmark)

    Stenberg, Claus; Støttrup, Josianne; Deurs, Mikael van

    2015-01-01

    Long-term effects of the Horns Rev 1 offshore wind farm (OWF) on fish abundance, diversity and spatial distribution were studied. This OWF is situated on the Horns Reef sand bank in the North Sea. Surveys were conducted in September 2001, before the OWF was established in 2002, and again...... in September 2009, 7 yr post-establishment. The sampling surveys used a multi-mesh-size gillnet. The 3 most abundant species in the surveys were whiting Merlangius merlangus, dab Limanda limanda and sandeels Ammodytidae spp. Overall fish abundance increased slightly in the area where the OWF was established...... but declined in the control area 6 km away. None of the key fish species or functional fish groups showed signs of negative long-term effects due to the OWF. Whiting and the fish group associated with rocky habitats showed different distributions relative to the distance to the artificial reef structures...

  6. Functional diversity of fish in tropical estuaries: A traits-based approach of communities in Pernambuco, Brazil

    Science.gov (United States)

    Silva-Júnior, C. A. B.; Mérigot, B.; Lucena-Frédou, F.; Ferreira, B. P.; Coxey, M. S.; Rezende, S. M.; Frédou, T.

    2017-11-01

    Environmental changes and human activities may have strong impacts on biodiversity and ecosystem functioning. While biodiversity is traditionally based on species richness and composition, there is a growing concern to take into account functional diversity to assess and manage species communities. In spite of their economic importance, functional diversity quantified by a traits-based approach is still poorly documented in tropical estuaries. In this study, the functional diversity of fishes was investigated within four estuaries in Pernambuco state, northeast of Brazil. These areas are subject to different levels of human impact (e.g. mangrove deforestation, shrimp farming, fishing etc.) and environmental conditions. Fishes were collected during 34 scientific surveys. A total of 122 species were identified and 12 functional traits were quantified describing two main functions: food acquisition and locomotion. Fish abundance and functional dissimilarities data were combined into a multivariate analysis, the Double Principal Coordinate Analysis, to identify the functional typology of fish assemblages according to the estuary. Results showed that Itapissuma, the largest estuary with a wider mangrove forest area, differs from the other three estuaries, showing higher mean values per samples of species richness S and quadratic entropy Q. Similarly, it presented a different functional typology (the first two axes of the DPCoA account for 68.7% of total inertia, while those of a traditional PCA based solely on species abundances provided only 17.4%). Conversely, Suape, Sirinhaém, and to a lower extent Rio Formoso, showed more similarity in their diversity. This result was attributed to their predominantly marine influenced hydrological features, and similar levels of species abundances and in morphological traits. Overall, this study, combining diversity indices and a recent multivariate analysis to access species contribution to functional typology, allows to deepen

  7. The Effects of Run-of-River Hydroelectric Power Schemes on Fish Community Composition in Temperate Streams and Rivers.

    Science.gov (United States)

    Bilotta, Gary S; Burnside, Niall G; Gray, Jeremy C; Orr, Harriet G

    2016-01-01

    The potential environmental impacts of large-scale storage hydroelectric power (HEP) schemes have been well-documented in the literature. In Europe, awareness of these potential impacts and limited opportunities for politically-acceptable medium- to large-scale schemes, have caused attention to focus on smaller-scale HEP schemes, particularly run-of-river (ROR) schemes, to contribute to meeting renewable energy targets. Run-of-river HEP schemes are often presumed to be less environmentally damaging than large-scale storage HEP schemes. However, there is currently a lack of peer-reviewed studies on their physical and ecological impact. The aim of this article was to investigate the effects of ROR HEP schemes on communities of fish in temperate streams and rivers, using a Before-After, Control-Impact (BACI) study design. The study makes use of routine environmental surveillance data collected as part of long-term national and international monitoring programmes at 23 systematically-selected ROR HEP schemes and 23 systematically-selected paired control sites. Six area-normalised metrics of fish community composition were analysed using a linear mixed effects model (number of species, number of fish, number of Atlantic salmon-Salmo salar, number of >1 year old Atlantic salmon, number of brown trout-Salmo trutta, and number of >1 year old brown trout). The analyses showed that there was a statistically significant effect (pcomposition. The implications of these findings are discussed in this article and recommendations are made for best-practice study design for future fish community impact studies.

  8. [Detection of heterogeneity and evolution of subclones in t(8;21) AML by QM-FISH].

    Science.gov (United States)

    Wang, Ying-chan; Hu, Lin-ping; Lin, Dong; Li, Cheng-wen; Yuan, Tian; Jia, Yu-jiao; Tian, Zheng; Tang, Ke-jing; Wang, Min; Wang, Jian-xiang

    2013-10-01

    To explore the heterogeneous subclones in acute myeloid leukemia (AML) with t(8;21) by quantitative multicolor- fluorescence in situ hybridization (QM-FISH), and to figure out whether there is putative ancestral relationship among different subclones. Bacterial artificial chromosomes (BAC) clones that contain the targeted genes including AML1, ETO, WT1, p27 and c-kit were searched in the data base UCSC Genome Bioinformatics. Multicolor FISH probes were prepared by linking fluorescein labeled dUTP or dCTP to targeted genes by nick translation. Bone marrow mononuclear cells from t (8;21) AML patients are dropped on to the wet surface of glass slides after hypotonic treatment and fixation. After hybridization, the fluorescence signals were captured by Zeiss fluorescence microscope. The copy number of AML1, ETO, WT1, p27, c- kit and the AML1-ETO fusion gene in AML1-ETO positive cells was counted. The cells with same signals were defined as a subclone. Various subclones were recorded and their proportions were calculated, and their evolutionary relationship was deduced. The subclones in matched primary and relapsed samples were compared, the evolution of dominant clones were figured out and the genomic abnormality that is associated with relapse and drug resistance were speculated. In this study, 36 primary AML with t(8;21) cases and 1 relapsed case paired with the primary case were detected. In these 36 primary cases, 4 cases (11.1%) acquired additional AML1-ETO fusion signal, 3(8.3%) had additional AML1 signal, 4(11.1%) had additional ETO signal, 20(55.6%) had additional WT1 signal, 15(41.7%) had additional p27 signal and 14(38.9%) had additional c-kit signal. In addition, 10(27.8%) displayed AML1 signal deletion, and such an aberration represents statistic significance in male patients. It seems that male patients usually accompany AML1 signal deletion. Of 36 cases, 28(77.8 %) harbored at least 2 subclones (ranged from 2 to 10). According to the genetic signature of

  9. Design and Implementation of a Community Health Worker HIV Treatment and Prevention Intervention in an HIV Hot Spot Fishing Community in Rakai, Uganda.

    Science.gov (United States)

    Long, Amanda; Mbabali, Ismail; Hutton, Heidi E; Thomas, Alvin G; Bugos, Eva; Mulamba, Jeremiah; Amico, Kathy Rivet; Nalugoda, Fred; Gray, Ronald H; Wawer, Maria J; Nakigozi, Gertrude; Chang, Larry W

    Innovative approaches are needed to increase engagement in HIV treatment and prevention services, particularly in HIV hot spots. Here, we detail our design, training approach, and early implementation experiences of a community-based HIV intervention called "health scouts." The intervention, utilizing a novel, theory-based approach, trained 10 community residents in an HIV hot spot fishing community to use motivational interviewing strategies and a mobile phone-based counseling application. During the first 3 months, 771 residents (median 82/health scout, range 27-160) were counseled. A directly observed Motivational Interviewing Treatment Integrity scale-based evaluation found adequate performance (median score 20/25, range 11-23). The health scout intervention was feasible to implement in a high HIV-prevalence fishing community, and its impact on HIV care outcomes will be evaluated in an ongoing cluster randomized trial. If found to be effective, it may be an important strategy for responding to HIV in high-burden settings.

  10. Composition and structure of the larval fish community related to environmental parameters in a tropical estuary impacted by climate change

    Science.gov (United States)

    Sloterdijk, Hans; Brehmer, Patrice; Sadio, Oumar; Müller, Hanno; Döring, Julian; Ekau, Werner

    2017-10-01

    Mangrove ecosystems have long been considered essential habitats and are commonly viewed and referred to as "nursery areas". They are highly sensitive to climate change, and environmental transformations in these ecosystems are expected. The Sine Saloum estuary is a case of a system affected by global climate change where reduced precipitation and temperature increase have resulted in an inversion of the salinity gradient. Within the estuary, the composition and structure of the larval fish community related to environmental parameters were investigated using neuston and ring trawl nets. Larval fishes were sampled at 16 stations distributed along a salinity and distance-to-the-sea gradient during four field campaigns (November 2013, February, June, and August 2014) covering an annual cycle. This is the first study documenting the spatial and temporal assemblages of fish larvae in an inverse estuary. The total of 41 taxa representing 24 families and 34 genus identified in this study was lower than that of other tropical estuaries. Clupeidae spp. was the dominant taxon, accounting for 28.9% of the total number of fish larvae caught, followed by Gerreidae spp. (21.1%), Hyporamphus picarti (18.8%), Diplodus bellottii (8.9%), Hypleurochilus langi (4.8%), Mugilidae spp. (4.4%), and Gobiidae sp.1 (3.5%). A total of 20 taxa were recorded within the upper estuary region, whereas 29 and 37 taxa were observed in the middle and lower reaches, respectively. While larval fish were captured at all sites and during all seasons, abundances and richness decreased with increasing salinity. Larval fish assemblages also showed a clear vertical structure corresponding to three distinct water strata. Salinity, water temperature, and dissolved oxygen were the variables that best explained the spatial and temporal differences in larval fish assemblages. It is difficult to forecast the future situation for this system but so far, compared to other mangrove estuarine systems, we have

  11. Trait-based diet selection: prey behaviour and morphology predict vulnerability to predation in reef fish communities.

    Science.gov (United States)

    Green, Stephanie J; Côté, Isabelle M

    2014-11-01

    Understanding how predators select their prey can provide important insights into community structure and dynamics. However, the suite of prey species available to a predator is often spatially and temporally variable. As a result, species-specific selectivity data are of limited use for predicting novel predator-prey interactions because they are assemblage specific. We present a method for predicting diet selection that is applicable across prey assemblages, based on identifying general morphological and behavioural traits of prey that confer vulnerability to predation independent of species identity. We apply this trait-based approach to examining prey selection by Indo-Pacific lionfish (Pterois volitans and Pterois miles), invasive predators that prey upon species-rich reef fish communities and are rapidly spreading across the western Atlantic. We first generate hypotheses about morphological and behavioural traits recurring across fish species that could facilitate or deter predation by lionfish. Constructing generalized linear mixed-effects models that account for relatedness among prey taxa, we test whether these traits predict patterns of diet selection by lionfish within two independent data sets collected at different spatial scales: (i) in situ visual observations of prey consumption and availability for individual lionfish and (ii) comparisons of prey abundance in lionfish stomach contents to availability on invaded reefs at large. Both analyses reveal that a number of traits predicted to affect vulnerability to predation, including body size, body shape, position in the water column and aggregation behaviour, are important determinants of diet selection by lionfish. Small, shallow-bodied, solitary fishes found resting on or just above reefs are the most vulnerable. Fishes that exhibit parasite cleaning behaviour experience a significantly lower risk of predation than non-cleaning fishes, and fishes that are nocturnally active are at significantly

  12. Modeling the fish community population dynamics and forecasting the eradication success of an exotic fish from an alpine stream

    Science.gov (United States)

    Laplanche, Christophe; Elger, Arnaud; Santoul, Frédéric; Thiede, Gary P.; Budy, Phaedra

    2018-01-01

    Management actions aimed at eradicating exotic fish species from riverine ecosystems can be better informed by forecasting abilities of mechanistic models. We illustrate this point with an example of the Logan River, Utah, originally populated with endemic cutthroat trout (Oncorhynchus clarkii utah), which compete with exotic brown trout (Salmo trutta). The coexistence equilibrium was disrupted by a large scale, experimental removal of the exotic species in 2009–2011 (on average, 8.2% of the stock each year), followed by an increase in the density of the native species. We built a spatially-explicit, reaction-diffusion model encompassing four key processes: population growth in heterogeneous habitat, competition, dispersal, and a management action. We calibrated the model with detailed long-term monitoring data (2001–2016) collected along the 35.4-km long river main channel. Our model, although simple, did a remarkable job reproducing the system steady state prior to the management action. Insights gained from the model independent predictions are consistent with available knowledge and indicate that the exotic species is more competitive; however, the native species still occupies more favorable habitat upstream. Dynamic runs of the model also recreated the observed increase of the native species following the management action. The model can simulate two possible distinct long-term outcomes: recovery or eradication of the exotic species. The processing of available knowledge using Bayesian methods allowed us to conclude that the chance for eradication of the invader was low at the beginning of the experimental removal (0.7% in 2009) and increased (20.5% in 2016) by using more recent monitoring data. We show that accessible mathematical and numerical tools can provide highly informative insights for managers (e.g., outcome of their conservation actions), identify knowledge gaps, and provide testable theory for researchers.

  13. Fish community structure and dynamics in a coastal hypersaline lagoon: Rio Lagartos, Yucatan, Mexico

    Science.gov (United States)

    Vega-Cendejas, Ma. Eugenia; Hernández de Santillana, Mireya

    2004-06-01

    Rio Lagartos, a tropical coastal lagoon in northern Yucatan Peninsula of Mexico, is characterized by high salinity during most of the year (55 psu annual average). Even though the area has been designated as a wetland of international importance because of its great biodiversity, fish species composition and distribution are unknown. To determine whether the salinity gradient was influencing fish assemblages or not, fish populations were sampled seasonally by seine and trawl from 1992 to 1993 and bimonthly during 1997. We identified 81 fish species, eight of which accounted for 53.1% considering the Importance Value Index ( Floridichthys polyommus, Sphoeroides testudineus, Eucinostomus argenteus, Eucinostomus gula, Fundulus majalis, Strongylura notata, Cyprinodon artifrons and Elops saurus). Species richness and density declined from the mouth to the inner zone where extreme salinity conditions are prominent (>80) and competitive interactions decreased. However, in Coloradas basin (53 average sanity) and in the inlet of the lagoon, the highest fish density and number of species were observed. Greater habitat heterogeneity and fish immigration were considered as the best explanation. Multivariate analysis found three zones distinguished by fish occurrence, abundance and distribution. Ichthyofaunal spatial differences were attributed to selective recruitment from the Gulf of Mexico due to salinity gradient and to changing climatic periods. Estuarine and euryhaline marine species are abundant, with estuarine dependent ones entering the system according to environmental preferences. This knowledge will contribute to the management of the Special Biosphere Reserve through baseline data to evaluate environmental and anthropogenic changes.

  14. Phylogeography of Ophioblennius: the role of ocean currents and geography in reef fish evolution.

    Science.gov (United States)

    Muss, A; Robertson, D R; Stepien, C A; Wirtz, P; Bowen, B W

    2001-03-01

    Many tropical reef fishes are divided into Atlantic and East Pacific taxa, placing similar species in two very different biogeographic regimes. The tropical Atlantic is a closed ocean basin with relatively stable currents, whereas the East Pacific is an open basin with unstable oceanic circulation. To assess how evolutionary processes are influenced by these differences in oceanography and geography, we analyze a 630-bp region of mitochondrial cytochrome b from 171 individuals in the blenniid genus Ophioblennius. Our results demonstrate deep genetic structuring in the Atlantic species, O. atlanticus, corresponding to recognized biogeographic provinces, with divergences of d = 5.2-12.7% among the Caribbean, Brazilian, St. Helena/Ascension Island, Gulf of Guinea, and Azores/Cape Verde regions. The Atlantic phylogeny is consistent with Pliocene dispersal from the western to eastern Atlantic, and the depth of these separations (along with prior morphological comparisons) may indicate previously unrecognized species. The eastern Pacific species, O. steindachneri, is characterized by markedly less structure than O. atlanticus, with shallow mitochondrial DNA lineages (dmax = 2.7%) and haplotype frequency shifts between locations in the Sea of Cortez, Pacific Panama, Clipperton Island, and the Galapagos Islands. No concordance between genetic structure and biogeographic provinces was found for O. steincdachneri. We attribute the phylogeographic pattern in O. atlanticus to dispersal during the reorganization of Atlantic circulation patterns that accompanied the shoaling of the Isthmus of Panama. The low degree of structure in the eastern Pacific is probably due to unstable circulation and linkage to the larger Pacific Ocean basin. The contrast in genetic signatures between Atlantic and eastern Pacific blennies demonstrates how differences in geology and oceanography have influenced evolutionary radiations within each region.

  15. Ecological divergence and conservatism: spatiotemporal patterns of niche evolution in a genus of livebearing fishes (Poeciliidae: Xiphophorus).

    Science.gov (United States)

    Culumber, Zachary W; Tobler, Michael

    2016-02-19

    Ecological factors often have a strong impact on spatiotemporal patterns of biodiversity. The integration of spatial ecology and phylogenetics allows for rigorous tests of whether speciation is associated with niche conservatism (constraints on ecological divergence) or niche divergence. We address this question in a genus of livebearing fishes for which the role of sexual selection in speciation has long been studied, but in which the potential role of ecological divergence during speciation has not been tested. By combining reconstruction of ancestral climate tolerances and disparity indices, we show that the earliest evolutionary split in Xiphophorus was associated with significant divergence for temperature variables. Niche evolution and present day niches were most closely associated with each species' geographic distribution relative to a biogeographic barrier, the Trans-Mexican Volcanic Belt. Tests for similarity of the environmental backgrounds of closely related species suggested that the relative importance of niche conservatism and divergence during speciation varied among the primary clades of Xiphophorus. Closely related species in the two swordtail clades exhibited higher levels of niche overlap than expected given environmental background similarity indicative of niche conservatism. In contrast, almost all species of platyfish had significantly divergent niches compared to environmental backgrounds, which is indicative of niche divergence. The results suggest that the relative importance of niche conservatism and divergence differed among the clades of Xiphophorus and that traits associated with niche evolution may be more evolutionarily labile in the platyfishes. Our results ultimately suggest that the taxonomic scale of tests for conservatism and divergence could greatly influence inferences of their relative importance in the speciation process.

  16. Evolution of bacterial communities in the Gironde Estuary (France) according to a salinity gradient

    Science.gov (United States)

    Prieur, D.; Troussellier, M.; Romana, A.; Chamroux, S.; Mevel, G.; Baleux, B.

    1987-01-01

    Three surveys were performed in the Gironde Estuary (France) in August 1981, March 1982 and July 1982. For each campaign, seventy samples were taken by helicopter, in order to follow the tide along the estuary. Of the parameters that were studied, salinity appeared to be the most important and which controls the bacterial communities along the estuary. This paper deals with the evolution of bacterial communities along a salinity gradient. The information obtained from various bacteriological parameters (total bacterial counts, viable counts on salted and unsalted media, functional evenness) were convergent. The bacterial community is dominated by an halotolerant microflora. In the estuary, a continental microflora is followed by a marine microflora. The succession zone between these two microflora is located between 5 and 10‰ areas of salinity.

  17. Rapid plant evolution in the presence of an introduced species alters community composition.

    Science.gov (United States)

    Smith, David Solance; Lau, Matthew K; Jacobs, Ryan; Monroy, Jenna A; Shuster, Stephen M; Whitham, Thomas G

    2015-10-01

    Because introduced species may strongly interact with native species and thus affect their fitness, it is important to examine how these interactions can cascade to have ecological and evolutionary consequences for whole communities. Here, we examine the interactions among introduced Rocky Mountain elk, Cervus canadensis nelsoni, a common native plant, Solidago velutina, and the diverse plant-associated community of arthropods. While introduced species are recognized as one of the biggest threats to native ecosystems, relatively few studies have investigated an evolutionary mechanism by which introduced species alter native communities. Here, we use a common garden design that addresses and supports two hypotheses. First, native S. velutina has rapidly evolved in the presence of introduced elk. We found that plants originating from sites with introduced elk flowered nearly 3 weeks before plants originating from sites without elk. Second, evolution of S. velutina results in a change to the plant-associated arthropod community. We found that plants originating from sites with introduced elk supported an arthropod community that had ~35 % fewer total individuals and a different species composition. Our results show that the impacts of introduced species can have both ecological and evolutionary consequences for strongly interacting species that subsequently cascade to affect a much larger community. Such evolutionary consequences are likely to be long-term and difficult to remediate.

  18. Biscayne National Park study on reef fish community changes over time

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Reef fish assemblage structure was assessed in 20062007 (recent period) in Biscayne National Park, Florida, USA , and compared with data collected from 1977 to 1981...

  19. Bioaccumulation of organochlorine pollutants in the fish community in Lake Arungen, Norway

    International Nuclear Information System (INIS)

    Sharma, Chhatra Mani; Rosseland, Bjorn Olav; Almvik, Marit; Eklo, Ole Martin

    2009-01-01

    Organochlorine pollutants in the major fish species (pike Esox lucius, perch Perca fluviatilis, and roach Rutilus rutilus) of Lake Arungen, Norway, were investigated after an extensive removal of large pike in 2004. The organochlorine pollutants detected in fish liver samples in 2005 were dichlorodiphenyltrichloroethane (DDTs), polychlorinated biphenyls (PCBs), hexachlorobenzene (HCB), and heptachlor epoxide (HCE). DDTs were the dominant among all analyzed OCs. ΣPCB and HCB, detected in fish from two clearly distinct trophic levels (prey and predators), give an indication of biomagnification. All OC concentrations in female pike were significantly lower compared to males, which might be due to the removal of high concentrations of pollutants in roe during spawning. - Organochlorine pollutants in fish tissues tend to magnify up the food chain

  20. The Integrated Genomic Architecture and Evolution of Dental Divergence in East African Cichlid Fishes (Haplochromis chilotes x H. nyererei

    Directory of Open Access Journals (Sweden)

    C. Darrin Hulsey

    2017-09-01

    Full Text Available The independent evolution of the two toothed jaws of cichlid fishes is thought to have promoted their unparalleled ecological divergence and species richness. However, dental divergence in cichlids could exhibit substantial genetic covariance and this could dictate how traits like tooth numbers evolve in different African Lakes and on their two jaws. To test this hypothesis, we used a hybrid mapping cross of two trophically divergent Lake Victoria species (Haplochromis chilotes × Haplochromis nyererei to examine genomic regions associated with cichlid tooth diversity. Surprisingly, a similar genomic region was found to be associated with oral jaw tooth numbers in cichlids from both Lake Malawi and Lake Victoria. Likewise, this same genomic location was associated with variation in pharyngeal jaw tooth numbers. Similar relationships between tooth numbers on the two jaws in both our Victoria hybrid population and across the phylogenetic diversity of Malawi cichlids additionally suggests that tooth numbers on the two jaws of haplochromine cichlids might generally coevolve owing to shared genetic underpinnings. Integrated, rather than independent, genomic architectures could be key to the incomparable evolutionary divergence and convergence in cichlid tooth numbers.

  1. Response of fish communities to multiple pressures: Development of a total anthropogenic pressure intensity index

    Czech Academy of Sciences Publication Activity Database

    Poikane, S.; Ritterbusch, D.; Argillier, C.; Bialokoz, W.; Blabolil, Petr; Breine, J.; Jaarsma, N.G.; Krause, T.; Kubečka, Jan; Lauridsen, T. L.; Noges, P.; Peirson, G.; Virbickas, T.

    2017-01-01

    Roč. 586, MAY (2017), s. 502-511 ISSN 0048-9697 R&D Projects: GA MŠk(CZ) EE2.3.20.0204; GA ČR(CZ) GA15-01625S Institutional support: RVO:60077344 Keywords : aquatic ecosystems * bioassessment * fish assemblages * fish-based assessment system * lakes Subject RIV: EH - Ecology, Behaviour OBOR OECD: Marine biology, freshwater biology, limnology Impact factor: 4.900, year: 2016

  2. Modelling Fish Habitat Suitability in the Eastern English Channel. Application to community habitat level

    OpenAIRE

    Vaz, Sandrine; Carpentier, Andre; Loots, Christophe; Koubbi, Philippe

    2004-01-01

    Valuable marine habitats and living resources can be found in the Eastern English Channel and in 2003, a Franco-British Interreg IIIA project, ‘Eastern Channel Habitat Atlas for Marine Resource Management’ (CHARM), was initiated to support decision-making for management of essential fish habitats. Fish habitat corresponds to geographic areas within which ranges of environmental factors define the presence of a particular species. Habitat Suitability index (HSI) modelling was used to relate fi...

  3. Local Biomass Baselines and the Recovery Potential for Hawaiian Coral Reef Fish Communities

    Directory of Open Access Journals (Sweden)

    Kelvin D. Gorospe

    2018-05-01

    Full Text Available Understanding the influence of multiple ecosystem drivers, both natural and anthropogenic, and how they vary across space is critical to the spatial management of coral reef fisheries. In Hawaii, as elsewhere, there is uncertainty with regards to how areas should be selected for protection, and management efforts prioritized. One strategy is to prioritize efforts based on an area's biomass baseline, or natural capacity to support reef fish populations. Another strategy is to prioritize areas based on their recovery potential, or in other words, the potential increase in fish biomass from present-day state, should management be effective at restoring assemblages to something more like their baseline state. We used data from 717 fisheries-independent reef fish monitoring surveys from 2012 to 2015 around the main Hawaiian Islands as well as site-level data on benthic habitat, oceanographic conditions, and human population density, to develop a hierarchical, linear Bayesian model that explains spatial variation in: (1 herbivorous and (2 total reef fish biomass. We found that while human population density negatively affected fish assemblages at all surveyed areas, there was considerable variation in the natural capacity of different areas to support reef fish biomass. For example, some areas were predicted to have the capacity to support ten times as much herbivorous fish biomass as other areas. Overall, the model found human population density to have negatively impacted fish biomass throughout Hawaii, however the magnitude and uncertainty of these impacts varied locally. Results provide part of the basis for marine spatial planning and/or MPA-network design within Hawaii.

  4. Fluctuations and trends in structure of fish community in Koporskaya Bay coastal waters (Gulf of Finland, Baltic Sea) and influence of water-intake facilities of the Leningrad nuclear power plant on fish fauna

    International Nuclear Information System (INIS)

    Zimin, V.L.

    1996-01-01

    The investigation is based on data obtained in 1978-1995 in Koporskaya Bay (eastern part of the Gulf of Finland), known as the cooling water-body of Leningrad (St. Petersburg) nuclear power plant Leningrad (NPP). 45 fish species were recorded in this period. The fish species diversity reduced significantly in last decade (from 8-9 in early 1980s up to 4-5 species in the nucleus of fish community in 1990s). Most vulnerable species, such as salmonids and coregonids, tend to disappear. Koporskaya Bay coastal area is now dominated by abundant three-spined and nine-spined sticklebacks. However, the relatively improved situation have occurred after beginning of reparation works at the 1st reactor unit, when the thermal loading was declined significantly. Great amount of fishes were perished at the water-intake facilities (more than 400 ton/year, in average). Changes in fish community structure caused noticeable changes in commercial fishing: the average percentage part of baltic herring (main object of fishing in the eastern Gulf of Finland) in commercial catches ranged from 90 up to 98% in the time before the LNPP started in operating, but from 1975, especially in last decade when LNPP has reached their project electrical capacity in 1981, we can see significant variations in herring's share (29-80%) in catches

  5. Evolution of restraint in a structured rock–paper–scissors community

    Science.gov (United States)

    Nahum, Joshua R.; Harding, Brittany N.; Kerr, Benjamin

    2011-01-01

    It is not immediately clear how costly behavior that benefits others evolves by natural selection. By saving on inherent costs, individuals that do not contribute socially have a selective advantage over altruists if both types receive equal benefits. Restrained consumption of a common resource is a form of altruism. The cost of this kind of prudent behavior is that restrained individuals give up resources to less-restrained individuals. The benefit of restraint is that better resource management may prolong the persistence of the group. One way to dodge the problem of defection is for altruists to interact disproportionately with other altruists. With limited dispersal, restrained individuals persist because of interaction with like types, whereas it is the unrestrained individuals that must face the negative long-term consequences of their rapacity. Here, we study the evolution of restraint in a community of three competitors exhibiting a nontransitive (rock–paper–scissors) relationship. The nontransitivity ensures a form of negative feedback, whereby improvement in growth of one competitor has the counterintuitive consequence of lowering the density of that improved player. This negative feedback generates detrimental long-term consequences for unrestrained growth. Using both computer simulations and evolution experiments with a nontransitive community of Escherichia coli, we find that restrained growth can evolve under conditions of limited dispersal in which negative feedback is present. This research, thus, highlights a set of ecological conditions sufficient for the evolution of one form of altruism. PMID:21690371

  6. Evolution of restraint in a structured rock-paper-scissors community.

    Science.gov (United States)

    Nahum, Joshua R; Harding, Brittany N; Kerr, Benjamin

    2011-06-28

    It is not immediately clear how costly behavior that benefits others evolves by natural selection. By saving on inherent costs, individuals that do not contribute socially have a selective advantage over altruists if both types receive equal benefits. Restrained consumption of a common resource is a form of altruism. The cost of this kind of prudent behavior is that restrained individuals give up resources to less-restrained individuals. The benefit of restraint is that better resource management may prolong the persistence of the group. One way to dodge the problem of defection is for altruists to interact disproportionately with other altruists. With limited dispersal, restrained individuals persist because of interaction with like types, whereas it is the unrestrained individuals that must face the negative long-term consequences of their rapacity. Here, we study the evolution of restraint in a community of three competitors exhibiting a nontransitive (rock-paper-scissors) relationship. The nontransitivity ensures a form of negative feedback, whereby improvement in growth of one competitor has the counterintuitive consequence of lowering the density of that improved player. This negative feedback generates detrimental long-term consequences for unrestrained growth. Using both computer simulations and evolution experiments with a nontransitive community of Escherichia coli, we find that restrained growth can evolve under conditions of limited dispersal in which negative feedback is present. This research, thus, highlights a set of ecological conditions sufficient for the evolution of one form of altruism.

  7. Fishing Fish Stem Cells and Nuclear Transplants

    OpenAIRE

    Hong, Yunhan

    2011-01-01

    Fish has been the subject of various research fields, ranging from ecology, evolution, physiology and toxicology to aquaculture. In the past decades fish has attracted considerable attention for functional genomics, cancer biology and developmental genetics, in particular nuclear transfer for understanding of cytoplasmic-nuclear relationship. This special issue reports on recent progress made in fish stem cells and nuclear transfer.

  8. Mineralization of PAHs in coal-tar impacted aquifer sediments and associated microbial community structure investigated with FISH

    Energy Technology Data Exchange (ETDEWEB)

    Rogers, S W; Ong, S K; Moorman, T B [Iowa State University, Ames, IA (USA)

    2007-11-15

    The microbial community structure and mineralization of polycyclic aromatic hydrocarbons (PAHs) in a coal-tar contaminated aquifer were investigated spatially using fluorescence in situ hybridization (FISH) and in laboratory-scale incubations of the aquifer sediments. DAPI-detected microbial populations in the contaminated sediments were three orders of magnitude greater than nearby uncontaminated sediments, suggesting growth on coal-tar constituents in situ. Actinobacteria, {beta}- and {gamma}-Proteobacteria, and Flavobacteria dominated the in situ aerobic (> 1 mg l{sup -1} dissolved oxygen) microbial community, whereas sulfate-reducing bacteria comprised 37% of the microbial community in the sulfidogenic region of the aquifer. Rapid mineralization of naphthalene and phenanthrene were observed in aerobic laboratory microcosms and resulted in significant enrichment of {beta}- and {gamma}-Proteobacteria potentially explaining their elevated presence in situ. Nitrate- and sulfate-limited mineralization of naphthalene in laboratory microcosms occurred to a small degree in aquifer sediments from locations where groundwater chemistry indicated nitrate- and sulfate-reduction, respectively. The results of this study suggest that FISH may be a useful tool for providing a link between laboratory microcosms and groundwater measurements made in situ necessary to better demonstrate the potential for natural attenuation at complex PAH contaminated sites.

  9. Origin and evolution of the Community Health Agent Program in Ceará state -

    Directory of Open Access Journals (Sweden)

    Maria Marlene Marques Ávila

    2012-01-01

    Full Text Available Objective: To outline the origin and evolution of the work of Community Health Agents (ACS in Ceará. Data synthesis: A review of the literature pertaining to the subject and interviews with technicians from Ceará State Health Secretariat (SESA-Ce and from Ceará Public Health School (ESP-Ce were the sources of the data collected. Initially, we discussed the social and political scenario in which primary health care developed in the state, emphasizing the evolution of socioeconomic indicators and infant health. Then, we did a brief exposure of health care model and from then on, we focused on the Community Health Agent Program, since its origin as an emergency program, its integration into the Family Health Strategy, the repercussions of this insertion in the work of the Community Health Agent and the need for training of ACS. Conclusion: A discussion on the process of training of ACS was presented seeking dialogue with the necessary training in face of new health needs of the population, and most of all, strengthening the role of ACS as a mediator between families and health professionals at local level.

  10. Fluorescence In Situ Hybridization (FISH-Based Karyotyping Reveals Rapid Evolution of Centromeric and Subtelomeric Repeats in Common Bean (Phaseolus vulgaris and Relatives

    Directory of Open Access Journals (Sweden)

    Aiko Iwata-Otsubo

    2016-04-01

    Full Text Available Fluorescence in situ hybridization (FISH-based karyotyping is a powerful cytogenetics tool to study chromosome organization, behavior, and chromosome evolution. Here, we developed a FISH-based karyotyping system using a probe mixture comprised of centromeric and subtelomeric satellite repeats, 5S rDNA, and chromosome-specific BAC clones in common bean, which enables one to unambiguously distinguish all 11 chromosome pairs. Furthermore, we applied the karyotyping system to several wild relatives and landraces of common bean from two distinct gene pools, as well as other related Phaseolus species, to investigate repeat evolution in the genus Phaseolus. Comparison of karyotype maps within common bean indicates that chromosomal distribution of the centromeric and subtelomeric satellite repeats is stable, whereas the copy number of the repeats was variable, indicating rapid amplification/reduction of the repeats in specific genomic regions. In Phaseolus species that diverged approximately 2–4 million yr ago, copy numbers of centromeric repeats were largely reduced or diverged, and chromosomal distributions have changed, suggesting rapid evolution of centromeric repeats. We also detected variation in the distribution pattern of subtelomeric repeats in Phaseolus species. The FISH-based karyotyping system revealed that satellite repeats are actively and rapidly evolving, forming genomic features unique to individual common bean accessions and Phaseolus species.

  11. Modeling community succession and assembly: A novel method for network evolution

    Directory of Open Access Journals (Sweden)

    WenJun Zhang

    2012-06-01

    Full Text Available The process of modeling community succession and assembly is in some sense a method for network evolution, as done by Barabasi and Albert (1999. It is also one of the methods to create a sample networkfrom the statistic network I proposed earlier. I think that the mechanism of network evolution supposed by Barabasi and Albert is most likely applicable to the natural phenomena with emergency property. For natural phenomena without emergency property, the present study indicated that a scale-free network may be produced through a new mechanism, i.e., whether the connection of a taxon x occurs, dependent on the type and property of taxon y (in particular, the degree of its direct correlation with x to be connected but not necessarily the existing number of connections of taxon y, as proposed in present study.

  12. Metagenomic insights into evolution of heavy metal-contaminated groundwater microbial community

    Energy Technology Data Exchange (ETDEWEB)

    Hemme, C.L.; Deng, Y.; Gentry, T.J.; Fields, M.W.; Wu, L.; Barua, S.; Barry, K.; Green-Tringe, S.; Watson, D.B.; He, Z.; Hazen, T.C.; Tiedje, J.M.; Rubin, E.M.; Zhou, J.

    2010-07-01

    Understanding adaptation of biological communities to environmental change is a central issue in ecology and evolution. Metagenomic analysis of a stressed groundwater microbial community reveals that prolonged exposure to high concentrations of heavy metals, nitric acid and organic solvents ({approx}50 years) has resulted in a massive decrease in species and allelic diversity as well as a significant loss of metabolic diversity. Although the surviving microbial community possesses all metabolic pathways necessary for survival and growth in such an extreme environment, its structure is very simple, primarily composed of clonal denitrifying {gamma}- and {beta}-proteobacterial populations. The resulting community is overabundant in key genes conferring resistance to specific stresses including nitrate, heavy metals and acetone. Evolutionary analysis indicates that lateral gene transfer could have a key function in rapid response and adaptation to environmental contamination. The results presented in this study have important implications in understanding, assessing and predicting the impacts of human-induced activities on microbial communities ranging from human health to agriculture to environmental management, and their responses to environmental changes.

  13. Metagenomic Insights into Evolution of a Heavy Metal-Contaminated Groundwater Microbial Community

    Energy Technology Data Exchange (ETDEWEB)

    Hemme, Christopher L.; Deng, Ye; Gentry, Terry J.; Fields, Matthew W.; Wu, Liyou; Barua, Soumitra; Barry, Kerrie; Tringe, Susannah G.; Watson, David B.; He, Zhili; Hazen, Terry C.; Tiedje, James M.; Rubin, Edward M.; Zhou, Jizhong

    2010-02-15

    Understanding adaptation of biological communities to environmental change is a central issue in ecology and evolution. Metagenomic analysis of a stressed groundwater microbial community reveals that prolonged exposure to high concentrations of heavy metals, nitric acid and organic solvents (~;;50 years) have resulted in a massive decrease in species and allelic diversity as well as a significant loss of metabolic diversity. Although the surviving microbial community possesses all metabolic pathways necessary for survival and growth in such an extreme environment, its structure is very simple, primarily composed of clonal denitrifying ?- and ?-proteobacterial populations. The resulting community is over-abundant in key genes conferring resistance to specific stresses including nitrate, heavy metals and acetone. Evolutionary analysis indicates that lateral gene transfer could be a key mechanism in rapidly responding and adapting to environmental contamination. The results presented in this study have important implications in understanding, assessing and predicting the impacts of human-induced activities on microbial communities ranging from human health to agriculture to environmental management, and their responses to environmental changes.

  14. Native freshwater species get out of the way: Prussian carp (Carassius gibelio) impacts both fish and benthic invertebrate communities in North America.

    Science.gov (United States)

    Ruppert, Jonathan L W; Docherty, Cassandra; Neufeld, Kenton; Hamilton, Kyle; MacPherson, Laura; Poesch, Mark S

    2017-10-01

    Prussian carp ( Carassius gibelio ) are one of the most noxious non-native species in Eurasia. Recently, Prussian carp, a non-native freshwater fish species, were genetically confirmed in Alberta, Canada and have been rapidly expanding their range in North America since establishment. Given their rapid range expansion, there is an increasing need to determine how Prussian carp may impact native species. We assessed the severity of the Prussian carp invasion by (i) determining their impact on fish communities, (ii) assessing their impact on benthic invertebrate communities, (iii) evaluating if Prussian carp alter abiotic conditions, and (iv) identifying where we find higher abundances of Prussian carp. When Prussian carp were established, we found significant changes to the fish community. Correspondingly, the degree of impact to benthic invertebrate communities was related to the stage of invasion (none, early or recent), where changes in fish communities were significantly concordant with changes in benthic invertebrate communities. Finally, we found that higher abundances of Prussian carp were significantly associated with lower abundances of a majority of native fish species. Altogether, using three lines of evidence, we determine that Prussian carp can have wide-ranging impacts on freshwater ecosystems in North America, pressing the need for management intervention.

  15. Drawdown flushing of a hydroelectric reservoir on the Rhône River: Impacts on the fish community and implications for the sediment management.

    Science.gov (United States)

    Grimardias, David; Guillard, Jean; Cattanéo, Franck

    2017-07-15

    Sediment flushings of hydropower reservoirs are commonly performed to maintain water resource uses and ecosystem services, but may have strong impacts on fish communities. Despite the worldwide scope of this issue, very few studies report quantitative in situ evaluations of these impacts. In June 2012, the drawdown flushing of the Verbois reservoir (Rhône River) was performed and subsequent impacts on the fish community were assessed, both inside the reservoir (fish densities by hydroacoustic surveys) and downstream (short-term movement and survival of radio tracked adult fish). Results showed that after the flushing fish acoustic density decreased by 57% in the reservoir, and no recolonization process was observed over the following 16 months. Downstream of the dam, the global apparent survival of fish to the flushing was estimated at 74%, but differed between species. The nine-year delay from the previous flushing and thus the amount of sediments to remove were too stressful for the low-resilience fish community of the Rhône River. Alternative flushing schedules are discussed to reduce these impacts. Copyright © 2017 Elsevier Ltd. All rights reserved.

  16. Spatio-Temporal Patterns in the Coral Reef Communities of the Spermonde Archipelago, 2012–2014, II: Fish Assemblages Display Structured Variation Related to Benthic Condition

    Directory of Open Access Journals (Sweden)

    Jeremiah G. Plass-Johnson

    2018-02-01

    Full Text Available The Spermonde Archipelago is a complex of ~70 mostly populated islands off Southwest Sulawesi, Indonesia, in the center of the Coral Triangle. The reefs in this area are exposed to a high level of anthropogenic disturbances. Previous studies have shown that variation in the benthos is strongly linked to water quality and distance from the mainland. However, little is known about the fish assemblages of the region and if their community structure also follows a relationship with benthic structure and distance from shore. In this study, we used eight islands of the archipelago, varying in distance from 1 to 55 km relative to the mainland, and 3 years of surveys, to describe benthic and fish assemblages and to examine the spatial and temporal influence of benthic composition on the structure of the fish assemblages. Cluster analysis indicated that distinct groups of fish were associated with distance, while few species were present across the entire range of sites. Relating fish communities to benthic composition using a multivariate generalized linear model confirmed that fish groups relate to structural complexity (rugosity or differing benthic groups; either algae, reef builders (coral and crustose coralline algae or invertebrates and rubble. From these relationships we can identify sets of fish species that may be lost given continued degradation of the Spermonde reefs. Lastly, the incorporation of water quality, benthic and fish indices indicates that local coral reefs responded positively after an acute disturbance in 2013 with increases in reef builders and fish diversity over relatively short (1 year time frames. This study contributes an important, missing component (fish community structure to the growing literature on the Spermonde Archipelago, a system that features environmental pressures common in the greater Southeast Asian region.

  17. Empowerment of the fishing community of Sesimbra through a participatory process: MARGov – collaborative governance in marine protected areas

    OpenAIRE

    Sá, Rita de Sousa Braga e

    2016-01-01

    Tese de doutoramento, Ciências do Mar, da Terra e do Ambiente, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2016 Sesimbra is a community established in the largest valley of the Arrábida coast. It is deeply connected to the sea through fishing, shipbuilding, sailors which contributed to the Portuguese expansion (XV and XVI centuries), as well as being an important maritime route and a trade point. More recently tourism became an important activity. During the 40’s (XX centu...

  18. Community-level response of fishes and aquatic macroinvertebrates to stream restoration in a third-order tributary of the Potomac River, USA

    Science.gov (United States)

    Selego, Stephen M.; Rose, Charnee L.; Merovich, George T.; Welsh, Stuart A.; Anderson, James T.

    2012-01-01

    Natural stream channel design principles and riparian restoration practices were applied during spring 2010 to an agriculturally impaired reach of the Cacapon River, a tributary of the Potomac River which flows into the Chesapeake Bay. Aquatic macroinvertebrates and fishes were sampled from the restoration reach, two degraded control, and two natural reference reaches prior to, concurrently with, and following restoration (2009 through 2010). Collector filterers and scrapers replaced collector gatherers as the dominant macroinvertebrate functional feeding groups in the restoration reach. Before restoration, based on indices of biotic integrity (IBI), the restoration reach fish and macroinvertebrate communities closely resembled those sampled from the control reaches, and after restoration more closely resembled those from the reference reaches. Although the macroinvertebrate community responded more favorably than the fish community, both communities recovered quickly from the temporary impairment caused by the disturbance of restoration procedures and suggest rapid improvement in local ecological conditions.

  19. Community-Level Response of Fishes and Aquatic Macroinvertebrates to Stream Restoration in a Third-Order Tributary of the Potomac River, USA

    Directory of Open Access Journals (Sweden)

    Stephen M. Selego

    2012-01-01

    Full Text Available Natural stream channel design principles and riparian restoration practices were applied during spring 2010 to an agriculturally impaired reach of the Cacapon River, a tributary of the Potomac River which flows into the Chesapeake Bay. Aquatic macroinvertebrates and fishes were sampled from the restoration reach, two degraded control, and two natural reference reaches prior to, concurrently with, and following restoration (2009 through 2010. Collector filterers and scrapers replaced collector gatherers as the dominant macroinvertebrate functional feeding groups in the restoration reach. Before restoration, based on indices of biotic integrity (IBI, the restoration reach fish and macroinvertebrate communities closely resembled those sampled from the control reaches, and after restoration more closely resembled those from the reference reaches. Although the macroinvertebrate community responded more favorably than the fish community, both communities recovered quickly from the temporary impairment caused by the disturbance of restoration procedures and suggest rapid improvement in local ecological conditions.

  20. The Evolution of Community Self-Organization in Interaction With Government Institutions: Cross-Case Insights From Three Countries

    NARCIS (Netherlands)

    J. Edelenbos (Jurian); I.F. van Meerkerk (Ingmar); Schenk, T. (Todd)

    2018-01-01

    textabstractThis article deals with the evolution of community self-organization in public administration. Within the literature of interactive governance, increasing attention is being paid to how communities take initiative in dealing with societal issues. However, we know little about the factors

  1. Design and Management Criteria for Fish, Amphibian, and Reptile Communities Within Created Agricultural Wetlands

    Science.gov (United States)

    Design and management criteria for created agricultural wetlands in the midwestern United States typically focus on maximizing the ability to process agricultural runoff. Ecological benefits for fish, amphibian, and reptiles are often secondary considerations. One example of this water quality focu...

  2. A study of the fish community structure in a tidal creek.

    Science.gov (United States)

    Spach, H L; Santos, C; Godefroid, R S; Nardi, M; Cunha, F

    2004-05-01

    The fish assemblage in a mangrove tidal creek was studied in monthly collections between August 1998 and July 1999 in the quadrature low tide and high tide, using a fyke net of 30 m x 1.5 m and meshes of 8 and 10 mm. Simultaneously with the biological collections, temperature, salinity, pH, water transparency, and current speed data were obtained. The collections resulted in the capture of 36,873 fish representing 22 families and 52 species. Immature individuals abounded (63.8%), and among the adult specimens there was a larger number of females. The species Anchoa parva, Harengula clupeola, Genidens genidens, and Bairdiella ronchus, contributed to 84.9% of the total capture of fish, however the contribution in mass was of 55.2%, indicating a predominance of small individuals. A smaller number of fish and species seem to occupy the area in the period between August and December, in comparison to the period between February and July, when the larger aggregations appear, mainly of the species Anchoa parva, Harengula clupeola, Opisthonema oglinum, Genidens genidens, Diapterus rhombeus, and Bairdiella ronchus. The environmental factors, pH, water transparency, and rainfall seem to have an influence in the structure of the observed biological patterns.

  3. The fish community of the Berg River estuary and an assessment of ...

    African Journals Online (AJOL)

    Zoology Department and Marine Biology Research Institute, University of Cape Town, Rondebosch, 7700. Republic of South Africa. Received I May 1993; accepted 6 October /993. Data concerning the species composition, abundance and distribution of fishes inhab~ing the Berg River estuary are presented and used to ...

  4. Fish community structures in Zostera and non-Zostera regions of the ...

    African Journals Online (AJOL)

    Zostera capensis Setchell as shelter and food for juvenile fish in South ... (0) Shannon-Weaver index of general diversity (II) where. H = rP)o~P; ..... sea. Van der Elst 1981. sea. Day et al. 1981. sea sea. Wallace 1975. sea. Day et al. 1981 .... The water in the Mngazana estuary is remarkably clear, especially in the mouth area ...

  5. Do changes in environmental and fishing pressures impact marine communities? An empirical assessment

    NARCIS (Netherlands)

    Rochet, M.J.; Trenkel, V.M.; Carpentier, A.; Coppin, F.; Sola, L.G.; Leaute, J.P.; Mahe, J.C.; Maiorano, P.; Mannini, A.; Murenu, M.; Piet, G.J.; Politou, C.Y.; Reale, B.; Spedicato, M.T.; Tserpes, G.; Bertrand, J.A.

    2010-01-01

    1. The development of ecosystem approaches to environmental management implies the need to account for multiple pressures on ecosystems. Trends in multiple metrics that respond differently to changes in major environmental pressures need to be combined to evaluate the impacts of fishing and

  6. Successes of Restoration and Its Effect on the Fish Community in a Freshwater Tidal Embayment of the Potomac River, USA

    Directory of Open Access Journals (Sweden)

    Kim de Mutsert

    2017-06-01

    Full Text Available After a local wastewater treatment plant significantly reduced phosphorus loading into a phytoplankton-dominated tributary of the Potomac River in the early 1980s, water quality and biological communities were monitored bi-weekly from April to September. After a 10-year time-lag, submerged aquatic vegetation (SAV, once abundant in this freshwater tidal embayment, returned to the area in 1993. After additional reductions in nitrogen load starting in 2000, the system switched to an SAV-dominated state in 2005. Fish abundance did not change during these distinct phase changes, but the fish community structure did. Increases in SAV provided refuge and additional spawning substrate for species with adhesive eggs such as Banded Killifish (Fundulus diaphanus, which is now the most abundant species in the embayment. Other changes observed were a decrease in the relative contribution of open water dwelling species such as White Perch (Morone americana, and an increase of visual predators such as Largemouth Bass (Micropterus salmoides. The 30-year record of data from this Potomac River tributary has revealed important long-term trends that validate the effectiveness of initiatives to reduce excess nutrient inputs, and will aid in the continued management of the watershed and point-source inputs.

  7. Rapid assessment of visual impairment (RAVI in marine fishing communities in South India - study protocol and main findings

    Directory of Open Access Journals (Sweden)

    Madala Sreenivas R

    2011-09-01

    Full Text Available Abstract Background Reliable data are a pre-requisite for planning eye care services. Though conventional cross sectional studies provide reliable information, they are resource intensive. A novel rapid assessment method was used to investigate the prevalence and causes of visual impairment and presbyopia in subjects aged 40 years and older. This paper describes the detailed methodology and study procedures of Rapid Assessment of Visual Impairment (RAVI project. Methods A population-based cross-sectional study was conducted using cluster random sampling in the coastal region of Prakasam district of Andhra Pradesh in India, predominantly inhabited by fishing communities. Unaided, aided and pinhole visual acuity (VA was assessed using a Snellen chart at a distance of 6 meters. The VA was re-assessed using a pinhole, if VA was Results The data collection was completed in Conclusion There is a high prevalence of visual impairment in marine fishing communities in Prakasam district in India. The data from this rapid assessment survey can now be used as a baseline to start eye care services in this region. The rapid assessment methodology (RAVI reported in this paper is robust, quick and has the potential to be replicated in other areas.

  8. Resource availability and competition shape the evolution of survival and growth ability in a bacterial community.

    Directory of Open Access Journals (Sweden)

    Minna Pekkonen

    Full Text Available Resource availability is one of the main factors determining the ecological dynamics of populations or species. Fluctuations in resource availability can increase or decrease the intensity of resource competition. Resource availability and competition can also cause evolutionary changes in life-history traits. We studied how community structure and resource fluctuations affect the evolution of fitness related traits using a two-species bacterial model system. Replicated populations of Serratia marcescens (copiotroph and Novosphingobium capsulatum (oligotroph were reared alone or together in environments with intergenerational, pulsed resource renewal. The comparison of ancestral and evolved bacterial clones with 1 or 13 weeks history in pulsed resource environment revealed species-specific changes in life-history traits. Co-evolution with S. marcescens caused N. capsulatum clones to grow faster. The evolved S. marcescens clones had higher survival and slower growth rate then their ancestor. The survival increased in all treatments after one week, and thereafter continued to increase only in the S. marcescens monocultures that experienced large resource pulses. Though adaptive radiation is often reported in evolution studies with bacteria, clonal variation increased only in N. capsulatum growth rate. Our results suggest that S. marcescens adapted to the resource renewal cycle whereas N. capsulatum was more affected by the interspecific competition. Our results exemplify species-specific evolutionary response to both competition and environmental variation.

  9. Epidemiology of cholera outbreaks and socio-economic characteristics of the communities in the fishing villages of Uganda: 2011-2015.

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    Godfrey Bwire

    2017-03-01

    Full Text Available The communities in fishing villages in the Great Lakes Region of Africa and particularly in Uganda experience recurrent cholera outbreaks that lead to considerable mortality and morbidity. We evaluated cholera epidemiology and population characteristics in the fishing villages of Uganda to better target prevention and control interventions of cholera and contribute to its elimination from those communities.We conducted a prospective study between 2011-15 in fishing villages in Uganda. We collected, reviewed and documented epidemiological and socioeconomic data for 10 cholera outbreaks that occurred in fishing communities located along the African Great Lakes and River Nile in Uganda. These outbreaks caused 1,827 suspected cholera cases and 43 deaths, with a Case-Fatality Ratio (CFR of 2.4%. Though the communities in the fishing villages make up only 5-10% of the Ugandan population, they bear the biggest burden of cholera contributing 58% and 55% of all reported cases and deaths in Uganda during the study period. The CFR was significantly higher among males than females (3.2% vs. 1.3%, p = 0.02. The outbreaks were seasonal with most cases occurring during the months of April-May. Male children under age of 5 years, and 5-9 years had increased risk. Cholera was endemic in some villages with well-defined "hotspots". Practices predisposing communities to cholera outbreaks included: the use of contaminated lake water, poor sanitation and hygiene. Additional factors were: ignorance, illiteracy, and poverty.Cholera outbreaks were a major cause of morbidity and mortality among the fishing communities in Uganda. In addition to improvements in water, sanitation, and hygiene, oral cholera vaccines could play an important role in the prevention and control of these outbreaks, particularly when targeted to high-risk areas and populations. Promotion and facilitation of access to social services including education and reduction in poverty should contribute to

  10. Biological signatures of dynamic river networks from a coupled landscape evolution and neutral community model

    Science.gov (United States)

    Stokes, M.; Perron, J. T.

    2017-12-01

    Freshwater systems host exceptionally species-rich communities whose spatial structure is dictated by the topology of the river networks they inhabit. Over geologic time, river networks are dynamic; drainage basins shrink and grow, and river capture establishes new connections between previously separated regions. It has been hypothesized that these changes in river network structure influence the evolution of life by exchanging and isolating species, perhaps boosting biodiversity in the process. However, no general model exists to predict the evolutionary consequences of landscape change. We couple a neutral community model of freshwater organisms to a landscape evolution model in which the river network undergoes drainage divide migration and repeated river capture. Neutral community models are macro-ecological models that include stochastic speciation and dispersal to produce realistic patterns of biodiversity. We explore the consequences of three modes of speciation - point mutation, time-protracted, and vicariant (geographic) speciation - by tracking patterns of diversity in time and comparing the final result to an equilibrium solution of the neutral model on the final landscape. Under point mutation, a simple model of stochastic and instantaneous speciation, the results are identical to the equilibrium solution and indicate the dominance of the species-area relationship in forming patterns of diversity. The number of species in a basin is proportional to its area, and regional species richness reaches its maximum when drainage area is evenly distributed among sub-basins. Time-protracted speciation is also modeled as a stochastic process, but in order to produce more realistic rates of diversification, speciation is not assumed to be instantaneous. Rather, each new species must persist for a certain amount of time before it is considered to be established. When vicariance (geographic speciation) is included, there is a transient signature of increased

  11. The role of strong-tie social networks in mediating food security of fish resources by a traditional riverine community in the Brazilian Amazon

    Directory of Open Access Journals (Sweden)

    Frédéric Mertens

    2015-09-01

    Full Text Available Social networks are a significant way through which rural communities that manage resources under common property regimes obtain food resources. Previous research on food security and social network analysis has mostly focused on egocentric network data or proxy variables for social networks to explain how social relations contribute to the different dimensions of food security. Whole-network approaches have the potential to contribute to former studies by revealing how individual social ties aggregate into complex structures that create opportunities or constraints to the sharing and distribution of food resources. We used a whole-network approach to investigate the role of network structure in contributing to the four dimensions of food security: food availability, access, utilization, and stability. For a case study of a riparian community from the Brazilian Amazon that is dependent on fish as a key element of food security, we mapped the community strong-tie network among 97% of the village population over 14 years old (n = 336 by integrating reciprocated friendship and occupational ties, as well as close kinship relationships. We explored how different structural properties of the community network contribute to the understanding of (1 the availability of fish as a community resource, (2 community access to fish as a dietary resource, (3 the utilization of fish for consumption in a way that allows the villagers to maximize nutrition while at the same time minimizing toxic risks associated with mercury exposure, and (4 the stability of the fish resources in local ecosystems as a result of cooperative behaviors and community-based management. The contribution of whole-network approaches to the study of the links between community-based natural resource management and food security were discussed in the context of recent social-ecological changes in the Amazonian region.

  12. Mercury and selenium accumulation assessment in fish most consumed by Cubatao Community, Sao Paulo, Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Farias, Luciana A.; Favaro, Deborah I.T.; Curcho, Michel R.S.M.; Fonseca, Barbara C.; Nascimento, Soraia M., E-mail: lufarias2@yahoo.com.b [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), SP (Brazil). Lab. de Analise por Ativacao de Neutrons; Kunioshi, Leonardo; Braga, Elisabete S., E-mail: edsbraga@usp.b [Universidade de Sao Paulo (USP), SP (Brazil). Inst. Oceanografico. Lab. de Nutrientes, Micronutrientes e Tracos nos Oceanos (LABNUT)

    2009-07-01

    High correlation between mercury (Hg) and selenium (Se) concentrations in fish organs is well known. In the present study, 58 fish samples of five fish species most commonly consumed by the Cubatao city population, Sao Paulo State, Brazil were analyzed. The Cubatao Estuary, located in southeastern Sao Paulo State, is an economically important area suffering severe environmental water quality problems due to industrial wastes, domestic sewage and solid residues. The waters of the bay suffer the impact of the immense industrial complex of Cubatao. In this study, Hg concentration in muscle, liver and kidney tissues and Se concentration in liver tissue from three predatory fish species: Macrodon ancylodon (Pescada), Menticirrhus americanus (Perna de Moca) and Micropogonias furnieri (Corvina) and two planctivorous species: Mugil liza (Tainha) and Sardella braziliensis (Sardinha) were determined. Mercury determination was performed using Cold Vapour Atomic Absorption Spectrometry (CV AAS) and selenium by Instrumental Neutron Activation Analysis (INAA). The muscle-Hg concentration variation (wet weight) was: (8 to 40 mug kg{sup -1}) - Sardinha; (12 to 62 mug kg{sup -1}) - Pescada; (3 to 23 mug kg{sup -1}) - Tainha; (43 to 184 mug kg{sup -1}) - Perna de Moca and (41 to 348 mug kg{sup -1}) - Corvina. The general concentration ranges of the analyzed elements in all species studied were (dry weight): muscle-Hg (13 to 1512 mug kg{sup -1}); liver-Hg (21 to 1804 mug kg{sup -1}); kidney-Hg 47 to 9912 mug kg{sup -1}) and liver-Se (2.10 to 43.00 mg kg{sup -1}). Se concentrations were higher than those of Hg in the liver. (author)

  13. Congruence in demersal fish, macroinvertebrate, and macroalgal community turnover on shallow temperate reefs.

    Science.gov (United States)

    Thomson, Russell J; Hill, Nicole A; Leaper, Rebecca; Ellis, Nick; Pitcher, C Roland; Barrett, Neville S; Edgar, Graham J

    2014-03-01

    To support coastal planning through improved understanding of patterns of biotic and abiotic surrogacy at broad scales, we used gradient forest modeling (GFM) to analyze and predict spatial patterns of compositional turnover of demersal fishes, macroinvertebrates, and macroalgae on shallow, temperate Australian reefs. Predictive models were first developed using environmental surrogates with estimates of prediction uncertainty, and then the efficacy of the three assemblages as biosurrogates for each other was assessed. Data from underwater visual surveys of subtidal rocky reefs were collected from the southeastern coastline of continental Australia (including South Australia and Victoria) and the northern coastline of Tasmania. These data were combined with 0.01 degree-resolution gridded environmental variables to develop statistical models of compositional turnover (beta diversity) using GFM. GFM extends the machine learning, ensemble tree-based method of random forests (RF), to allow the simultaneous modeling of multiple taxa. The models were used to generate predictions of compositional turnover for each of the three assemblages within unsurveyed areas across the 6600 km of coastline in the region of interest. The most important predictor for all three assemblages was variability in sea surface temperature (measured as standard deviation from measures taken interannually). Spatial predictions of compositional turnover within unsurveyed areas across the region of interest were remarkably congruent across the three taxa. However, the greatest uncertainty in these predictions varied in location among the different assemblages. Pairwise congruency comparisons of observed and predicted turnover among the three assemblages showed that invertebrate and macroalgal biodiversity were most similar, followed by fishes and macroalgae, and lastly fishes and invertebrate biodiversity, suggesting that of the three assemblages, macroalgae would make the best biosurrogate for

  14. Mercury and selenium accumulation assessment in fish most consumed by Cubatao Community, Sao Paulo, Brazil

    International Nuclear Information System (INIS)

    Farias, Luciana A.; Favaro, Deborah I.T.; Curcho, Michel R.S.M.; Fonseca, Barbara C.; Nascimento, Soraia M.

    2009-01-01

    High correlation between mercury (Hg) and selenium (Se) concentrations in fish organs is well known. In the present study, 58 fish samples of five fish species most commonly consumed by the Cubatao city population, Sao Paulo State, Brazil were analyzed. The Cubatao Estuary, located in southeastern Sao Paulo State, is an economically important area suffering severe environmental water quality problems due to industrial wastes, domestic sewage and solid residues. The waters of the bay suffer the impact of the immense industrial complex of Cubatao. In this study, Hg concentration in muscle, liver and kidney tissues and Se concentration in liver tissue from three predatory fish species: Macrodon ancylodon (Pescada), Menticirrhus americanus (Perna de Moca) and Micropogonias furnieri (Corvina) and two planctivorous species: Mugil liza (Tainha) and Sardella braziliensis (Sardinha) were determined. Mercury determination was performed using Cold Vapour Atomic Absorption Spectrometry (CV AAS) and selenium by Instrumental Neutron Activation Analysis (INAA). The muscle-Hg concentration variation (wet weight) was: (8 to 40 μg kg -1 ) - Sardinha; (12 to 62 μg kg -1 ) - Pescada; (3 to 23 μg kg -1 ) - Tainha; (43 to 184 μg kg -1 ) - Perna de Moca and (41 to 348 μg kg -1 ) - Corvina. The general concentration ranges of the analyzed elements in all species studied were (dry weight): muscle-Hg (13 to 1512 μg kg -1 ); liver-Hg (21 to 1804 μg kg -1 ); kidney-Hg 47 to 9912 μg kg -1 ) and liver-Se (2.10 to 43.00 mg kg -1 ). Se concentrations were higher than those of Hg in the liver. (author)

  15. Community structure and diversity of demersal fish assemblages: the role of fishery

    Directory of Open Access Journals (Sweden)

    Mary Labropoulou

    2004-04-01

    Full Text Available Seasonal experimental trawl surveys were carried out in the Northern Aegean and Thracian seas (NE Mediterranean, Greece, from summer 1990 to autumn 1993, during which a total of 172 fish species were caught. In these areas, fishing pressure is very high, since approximately 50% of the Greek otter trawl fleet operates there, producing more than 57% of the total demersal landings. Different statistics were used to assess spatial structure, seasonal changes and diversity of the demersal fish assemblages on the continental shelf and upper slope. The following measures were applied to the species abundance matrix: species diversity, species richness, evenness and dominance. The analysis of 501 bottom trawls revealed that, in general, species diversity, richness and evenness decreased with water depth, with the highest values at depths 200 m. The effect of depth on the diversity patterns observed was always significant, while seasonal trends were similar with those described for the overall diversity characteristics in each area. Classification and ordination methods showed the existence of 4 groups associated with the continental shelf and upper slope in each area. Classification of the top ranking species at each group and area revealed that commercially important species were dominant in the shallowest zone (

  16. Trophic diversity in the evolution and community assembly of loricariid catfishes

    Directory of Open Access Journals (Sweden)

    Lujan Nathan K

    2012-07-01

    Full Text Available Abstract Background The Neotropical catfish family Loricariidae contains over 830 species that display extraordinary variation in jaw morphologies but nonetheless reveal little interspecific variation from a generalized diet of detritus and algae. To investigate this paradox, we collected δ13C and δ15N stable isotope signatures from 649 specimens representing 32 loricariid genera and 82 species from 19 local assemblages distributed across South America. We calculated vectors representing the distance and direction of each specimen relative to the δ15N/δ13C centroid for its local assemblage, and then examined the evolutionary diversification of loricariids across assemblage isotope niche space by regressing the mean vector for each genus in each assemblage onto a phylogeny reconstructed from osteological characters. Results Loricariids displayed a total range of δ15N assemblage centroid deviation spanning 4.9‰, which is within the tissue–diet discrimination range known for Loricariidae, indicating that they feed at a similar trophic level and that δ15N largely reflects differences in their dietary protein content. Total range of δ13C deviation spanned 7.4‰, which is less than the minimum range reported for neotropical river fish communities, suggesting that loricariids selectively assimilate a restricted subset of the full basal resource spectrum available to fishes. Phylogenetic regression of assemblage centroid-standardized vectors for δ15N and δ13C revealed that loricariid genera with allopatric distributions in disjunct river basins partition basal resources in an evolutionarily conserved manner concordant with patterns of jaw morphological specialization and with evolutionary diversification via ecological radiation. Conclusions Trophic partitioning along elemental/nutritional gradients may provide an important mechanism of dietary segregation and evolutionary diversification among loricariids and perhaps other taxonomic

  17. Response of fish communities to cropland density and natural environmental setting in the Eastern Highland Rim Ecoregion of the lower Tennessee River basin, Alabama and Tennessee, 1999

    Science.gov (United States)

    Powell, Jeffrey R.

    2003-01-01

    Response of fish communities to cropland density and natural environmental setting were evaluated at 20 streams in the Eastern Highland Rim Ecoregion of the lower Tennessee River Basin during the spring of 1999. Sites were selected to represent a gradient of cropland densities in basins draining about 30 to 100 square miles. Fish communities were sampled by using a combination of seining and electrofishing techniques. A total of 10,550 individual fish, representing 63 species and 15 families, were collected during the study and included the families Cyprinidae (minnows), 18 species; Percidae (perch and darters), 12 species; and Centrarchidae (sunfish), 12 species. Assessments of environmental characteristics, including instream and terrestrial data and land-cover data, were conducted for each site. Instream measurements, such as depth, velocity, substrate type, and embeddedness, were recorded at 3 points across 11 equidistant transects at each site. Terrestrial measurements, such as bank angle, canopy angle, and canopy closure percentage, were made along the stream bank and midchannel areas. Water-quality data collected included pH, dissolved oxygen, specific conductivity, water temperature, nutrients, and fecal-indicator bacteria. Substrate embeddedness was the only variable correlated with both cropland density and fish communities (as characterized by ordination scores and several community level metrics). Multivariate and nonparametric correlation techniques were used to evaluate fish-community responses to physical and chemical factors associated with a cropland-density gradient, where the gradient was defined as the percentage of the basin in row crops. Principal component analysis and correspondence analysis suggest that the Eastern Highland Rim Ecoregion is composed of three subgroups of sites based on inherent physical and biological differences. Data for the subgroup containing the largest number of sites were then re-analyzed, revealing that several

  18. The biggest fish in the sea? Dynamic Kenyan labour migration in the East African community

    NARCIS (Netherlands)

    Ong'ayo, A.O.O.; Oucho, J.O.; Oucho, L.A.

    2013-01-01

    This study assesses the Kenyan policy and institutional framework concerning South–South labour migration with particular focus on the East African Community (EAC) countries. It focuses mainly on one particular policy instrument, the East African Community Common Market framework. The research

  19. Changes in the fish community of the Kpong Headpond, lower Volta River, Ghana after 25 years of impoundment

    Directory of Open Access Journals (Sweden)

    Theodore Quarcoopome

    2011-12-01

    Full Text Available The Kpong Headpond was the second created on the Volta River after Akosombo Dam, primarily as a source of hydroelectric power generation and potable water supply, and additionally, it has supported some fish production in Ghana since impoundment. The changes in fish community of the Kpong Headpond were studied to provide baseline information for strategies formulation to support the socio-economic development of the reservoir. The study identified changes in the fish community of the reservoir by comparing occurrence, composition, relative abundance and relative importance estimates of fish species, families and trophic groups, from available previous studies in the reservoir. From the collated information all fishes identified in the reservoir were categorised based on occurrence and importance as disappeared, appeared, permanent, declined or important, to show current status. The results indicated that the fish community has experienced a shift in the composition and relative abundance of important species, families and trophic groups in terms of number and weight, while remaining ecologically balanced. Representatives of the families Osteoglossidae, Centropomidae and Characidae have declined while representatives of the families Claroteidae, Cyprinidae and Cichlidae have increased. The aufwuch-detritus and herbivores declined while semi-pelagic omnivores increased resulting in a shift in dominance to benthic and semi pelagic omnivores. The appearance of five species and the disappearance of 25 others indicated a dynamic restructuring of the fish community in the reservoir, as expected. Enforcement of fishing regulations including the use of appropriate gear and fishing methods, fishery access control, promotion of culture-based fisheries and improvement in fisher education are recommended topics for sustainable fisheries in the reservoir. Rev. Biol. Trop. 59 (4: 1685-1696. Epub 2011 December 01.La laguna Kpong se convirtió en la segunda

  20. Fish communities and trophic metrics as measures of ecological degradation: a case study in the tributaries of the river Ganga basin, India.

    Science.gov (United States)

    Dubey, Vineet Kumar; Sarkar, Uttam Kumar; Pandey, Ajay; Lakra, Wazir Singh

    2013-09-01

    In India, freshwater aquatic resources are suffering from increasing human population, urbanization and shortage of all kind of natural resources like water. To mitigate this, all the major rivers have been planned for a river-interlinking through an interlinking canal system under a huge scheme; yet, the baseline information on ecological conditions of those tropical rivers and their fish communities is lacking at present. In view of that, the present study was undertaken to assess the ecological condition by comparing the trophic metrics of the fish community, conservation status and water chemistry of the two tropical rivers of the Ganga basin, from October 2007 to November 2009. The analysis of trophic niches of the available fish species indicated dominancy of carnivorous (19 species) in river Ken and omnivorous (23 species) in Betwa. The trophic level score of carnivorous species was recorded similar (33.33%) in both rivers, whereas omnivorous species were mostly found in Betwa (36.51%) than Ken (28.07%). Relatively undisturbed sites of Betwa (B1, B2 and B3) and Ken (K2, K3 and K5) were characterized by diverse fish fauna and high richness of threatened species. The higher mean trophic level scores were recorded at B4 of Betwa and K4 of Ken. The Bray-Curtis index for trophic level identified the carnivorous species (> 0.32) as an indicator species for pollution. Anthropogenic exposure, reflected in water quality as well as in fish community structure, was found higher especially in the lower stretches of both rivers. Our results suggest the importance of trophic metrics on fish community, for ecological conditions evaluation, which enables predictions on the effect of future morphodynamic changes (in the post-interlinking phases), and provide a framework and reference condition to support restoration efforts of relatively altered fish habitats in tropical rivers of India.

  1. Fish communities and trophic metrics as measures of ecological degradation: a case study in the tributaries of the river Ganga basin, India

    Directory of Open Access Journals (Sweden)

    Vineet Kumar Dubey

    2013-09-01

    Full Text Available In India, freshwater aquatic resources are suffering from increasing human population, urbanization and shortage of all kind of natural resources like water. To mitigate this, all the major rivers have been planned for a river-interlinking through an interlinking canal system under a huge scheme; yet, the baseline information on ecological conditions of those tropical rivers and their fish communities is lacking at present. In view of that, the present study was undertaken to assess the ecological condition by comparing the trophic metrics of the fish community, conservation status and water chemistry of the two tropical rivers of the Ganga basin, from October 2007 to November 2009. The analysis of trophic niches of the available fish species indicated dominancy of carnivorous (19 species in river Ken and omnivorous (23 species in Betwa. The trophic level score of carnivorous species was recorded similar (33.33% in both rivers, whereas omnivorous species were mostly found in Betwa (36.51% than Ken (28.07%. Relatively undisturbed sites of Betwa (B1, B2 and B3 and Ken (K2, K3 and K5 were characterized by diverse fish fauna and high richness of threatened species. The higher mean trophic level scores were recorded at B4 of Betwa and K4 of Ken. The Bray-Curtis index for trophic level identified the carnivorous species (>0.32 as an indicator species for pollution. Anthropogenic exposure, reflected in water quality as well as in fish community structure, was found higher especially in the lower stretches of both rivers. Our results suggest the importance of trophic metrics on fish community, for ecological conditions evaluation, which enables predictions on the effect of future morphodynamic changes (in the post-interlinking phases, and provide a framework and reference condition to support restoration efforts of relatively altered fish habitats in tropical rivers of India.

  2. Mercury Levels in Human Hair and Farmed Fish near Artisanal and Small-Scale Gold Mining Communities in the Madre de Dios River Basin, Peru

    Directory of Open Access Journals (Sweden)

    Aubrey L. Langeland

    2017-03-01

    Full Text Available Artisanal and small-scale gold mining (ASGM has been an important source of income for communities in the Madre de Dios River Basin in Peru for hundreds of years. However, in recent decades, the scale of ASGM activities in the region has increased dramatically, and exposures to a variety of occupational and environmental hazards related to ASGM, including mercury, are becoming more widespread. The aims of our study were to: (1 examine patterns in the total hair mercury level of human participants in several communities in the region and compare these results to the 2.2 µg/g total hair mercury level equivalent to the World Health Organization (WHO Expert Committee of Food Additives (JECFA’s Provisional Tolerable Weekly Intake (PTWI; and (2, to measure the mercury levels of paco (Piaractus brachypomus fish raised in local aquaculture ponds, in order to compare these levels to the EPA Fish Tissue Residue Criterion of 0.3 µg Hg/g fish (wet weight. We collected hair samples from 80 participants in four communities (one control and three where ASGM activities occurred in the region, and collected 111 samples from fish raised in 24 local aquaculture farms. We then analyzed the samples for total mercury. Total mercury levels in hair were statistically significantly higher in the mining communities than in the control community, and increased with increasing geodesic distance from the Madre de Dios headwaters, did not differ by sex, and frequently exceeded the reference level. Regression analyses indicated that higher hair mercury levels were associated with residence in ASGM communities. The analysis of paco fish samples found no samples that exceeded the EPA tissue residue criterion. Collectively, these results align with other recent studies showing that ASGM activities are associated with elevated human mercury exposure. The fish farmed through the relatively new process of aquaculture in ASGM areas appeared to have little potential to contribute

  3. Mercury Levels in Human Hair and Farmed Fish near Artisanal and Small-Scale Gold Mining Communities in the Madre de Dios River Basin, Peru.

    Science.gov (United States)

    Langeland, Aubrey L; Hardin, Rebecca D; Neitzel, Richard L

    2017-03-14

    Artisanal and small-scale gold mining (ASGM) has been an important source of income for communities in the Madre de Dios River Basin in Peru for hundreds of years. However, in recent decades, the scale of ASGM activities in the region has increased dramatically, and exposures to a variety of occupational and environmental hazards related to ASGM, including mercury, are becoming more widespread. The aims of our study were to: (1) examine patterns in the total hair mercury level of human participants in several communities in the region and compare these results to the 2.2 µg/g total hair mercury level equivalent to the World Health Organization (WHO) Expert Committee of Food Additives (JECFA)'s Provisional Tolerable Weekly Intake (PTWI); and (2), to measure the mercury levels of paco ( Piaractus brachypomus ) fish raised in local aquaculture ponds, in order to compare these levels to the EPA Fish Tissue Residue Criterion of 0.3 µg Hg/g fish (wet weight). We collected hair samples from 80 participants in four communities (one control and three where ASGM activities occurred) in the region, and collected 111 samples from fish raised in 24 local aquaculture farms. We then analyzed the samples for total mercury. Total mercury levels in hair were statistically significantly higher in the mining communities than in the control community, and increased with increasing geodesic distance from the Madre de Dios headwaters, did not differ by sex, and frequently exceeded the reference level. Regression analyses indicated that higher hair mercury levels were associated with residence in ASGM communities. The analysis of paco fish samples found no samples that exceeded the EPA tissue residue criterion. Collectively, these results align with other recent studies showing that ASGM activities are associated with elevated human mercury exposure. The fish farmed through the relatively new process of aquaculture in ASGM areas appeared to have little potential to contribute to human

  4. [Hyperbolic growth of marine and continental biodiversity through the phanerozoic and community evolution].

    Science.gov (United States)

    Markov, A V; Korotaev, A V

    2008-01-01

    models, the hyperbolic pattern of the world population growth arises from a non-linear second-order positive feedback between the demographic growth and technological development (more people - more potential inventors - faster technological growth - the carrying capacity of the Earth grows faster - faster population growth - more people - more potential inventors, and so on). Based on the analogy with macrosociological models and diverse paleontological data, we suggest that the hyperbolic character of biodiversity growth can be similarly accounted for by a non-linear second-order positive feedback between the diversity growth and community structure complexity. The feedback can work via two parallel mechanisms: 1) decreasing extinction rate (more taxa- higher alpha diversity, or mean number of taxa in a community - communities become more complex and stable - extinction rate decreases - more taxa, and so on) and 2) increasing origination rate (new taxa facilitate niche construction; newly formed niches can be occupied by the next "generation" of taxa). The latter possibility makes the mechanisms underlying the hyperbolic growth of biodiversity and human population even more similar, because the total ecospace of the biota is analogous to the "carrying capacity of the Earth" in demography. As far as new species can increase ecospace and facilitate opportunities for additional species entering the community, they are analogous to the "inventors" of the demographic models whose inventions increase the carrying capacity of the Earth. The hyperbolic growth of the Phanerozoic biodiverstiy suggests that "cooperative" interactions between taxa can play an important role in evolution, along with generally accepted competitive interactions. Due to this "cooperation", the evolution of biodiversity acquires some features of a self-accelerating process. Macroevolutionary "cooperation" reveals itself in: 1) increasing stability of communities that arises from alpha diversity growth

  5. Stable isotopes and mercury in a model estuarine fish: Multibasin comparisons with water quality, community structure, and available prey base

    Energy Technology Data Exchange (ETDEWEB)

    Adams, Douglas H., E-mail: Doug.Adams@MyFWC.com; Paperno, Richard

    2012-01-01

    Stable-isotope ratios ({delta}{sup 13}C and {delta}{sup 15}N) and mercury in a model predator, and associated prey community assessments were used to make inferences regarding food web relationships and how these relationships are influenced by habitat variability and anthropogenic factors. Although interconnected, the three major basins of the Indian River Lagoon system on the Atlantic coast of Florida comprise noticeably different available habitat types with spatially distinct faunal communities and available prey for spotted seatrout, Cynoscion nebulosus, a model predatory fish species. Water quality, degree of urbanization, human population density, and levels of nitrogen enrichment clearly differ between these representative estuarine basins. The differences can influence feeding ecology and therefore result in different mercury concentrations and different stable-isotope signatures of spotted seatrout between basins. Mercury concentrations in spotted seatrout were greatest in Mosquito Lagoon (ML) and least in the Indian River Lagoon proper (IRL), although concentrations were low for all basins. Spotted seatrout from IRL were carbon-depleted and nitrogen-enriched compared with those from the other basins; this suggests either that the fish's primary source of carbon in IRL is an algae- or phytoplankton-based food web or that the pathway through the food web is shorter there. The {delta}{sup 15}N values of IRL spotted seatrout were greater than those in the Banana River Lagoon or ML, suggesting slightly different trophic positioning of fish in these basins. The greater {delta}{sup 15}N values in IRL spotted seatrout may also reflect the greater human population density and resultant anthropogenic inputs (e.g., observed higher total nitrogen levels) in IRL compared with the other more pristine basins examined. Understanding species' responses to broad-scale habitat heterogeneity in estuaries and knowing basin-specific differences in stable isotopes

  6. Successional change in the Lake Superior fish community: population trends in ciscoes, rainbow smelt, and lake trout, 1958-2008

    Science.gov (United States)

    Gorman, Owen T.

    2012-01-01

    The Lake Superior fish community underwent massive changes in the second half of the 20th century. Those changes are largely reflected in changes in abundance of the adults of principal prey species, the ciscoes (Coregonus spp.), the invasive rainbow smelt (Osmerus mordax), and the principal predator, lake trout (Salvelinus namaycush). To better understand changes in species abundances, a comprehensive series of gillnet and bottom trawl data collected from 1958 to 2008 were examined. In the late 1950s/early 1960s, smelt abundance was at its maximum, wild lake trout was at its minimum, and an abundance of hatchery lake trout was increasing rapidly. The bloater (Coregonus hoyi) was the prevalent cisco in the lake; abundance was more than 300% greater than the next most abundant cisco, shortjaw cisco (C. zenithicus), followed by kiyi (C. kiyi) and lake cisco (C. artedi). By the mid-1960s, abundance of hatchery lake trout was nearing maximum, smelt abundance was beginning to decline, and abundances of all ciscoes declined, but especially that of shortjaw cisco and kiyi. By the late 1970s, recovery of wild lake trout stocks was well underway and abundances of hatchery lake trout and smelt were declining and the ciscoes were reaching their nadir. During 1980–1990, the fish community underwent a dramatic shift in organization and structure. The rapid increase in abundance of wild lake trout, concurrent with a rapid decline in hatchery lake trout, signaled the impending recovery. Rainbow smelt abundance dropped precipitously and within four years, lake cisco and bloater populations rebounded on the heels of a series of strong recruitment events. Kiyi populations showed signs of recovery by 1989, and shortjaw by 2000, though well below historic maximum abundances. High abundance of adult smelt prior to 1980 appears to be the only factor linked to recruitment failure in the ciscoes. Life history traits of the cisco species were examined to better understand their different

  7. The 5S rDNA family evolves through concerted and birth-and-death evolution in fish genomes: an example from freshwater stingrays

    Science.gov (United States)

    2011-01-01

    Background Ribosomal 5S genes are well known for the critical role they play in ribosome folding and functionality. These genes are thought to evolve in a concerted fashion, with high rates of homogenization of gene copies. However, the majority of previous analyses regarding the evolutionary process of rDNA repeats were conducted in invertebrates and plants. Studies have also been conducted on vertebrates, but these analyses were usually restricted to the 18S, 5.8S and 28S rRNA genes. The recent identification of divergent 5S rRNA gene paralogs in the genomes of elasmobranches and teleost fishes indicate that the eukaryotic 5S rRNA gene family has a more complex genomic organization than previously thought. The availability of new sequence data from lower vertebrates such as teleosts and elasmobranches enables an enhanced evolutionary characterization of 5S rDNA among vertebrates. Results We identified two variant classes of 5S rDNA sequences in the genomes of Potamotrygonidae stingrays, similar to the genomes of other vertebrates. One class of 5S rRNA genes was shared only by elasmobranches. A broad comparative survey among 100 vertebrate species suggests that the 5S rRNA gene variants in fishes originated from rounds of genome duplication. These variants were then maintained or eliminated by birth-and-death mechanisms, under intense purifying selection. Clustered multiple copies of 5S rDNA variants could have arisen due to unequal crossing over mechanisms. Simultaneously, the distinct genome clusters were independently homogenized, resulting in the maintenance of clusters of highly similar repeats through concerted evolution. Conclusions We believe that 5S rDNA molecular evolution in fish genomes is driven by a mixed mechanism that integrates birth-and-death and concerted evolution. PMID:21627815

  8. Evaluation of the community structure of a rockpool fish assemblage from Peniche (Portugal using clove oil as an anesthetic

    Directory of Open Access Journals (Sweden)

    Francisco Mattioli

    2014-06-01

    Full Text Available The goal of this study was to provide the first scientific data of the intertidal ichthyofauna community of Peniche. In order to have an accurate assessment, anesthetics were used, since this method is more effective than visual census. Therefore, the ideal concentration of clove oil to be used as anesthetics for local rock pool fish was tested. Through laboratory experiments with some of the most common species in the area, the concentration 30 mg.L-1was considered ideal. A total of 4 rockpools were sampled between May and July 2012, in two different locations (2 in Praia da Gamboa and 2 in Portinho da Areia Norte, in Peniche (West of Portugal. A total of 508 fishes belonging to 17 different species were registered. Fish abundance, occurrence frequencies and sizes were registered and compared for the two beaches and for the respective tide pools. The most abundant species was Gobius n.sp. while the most frequent was Gobius paganellus. These two species represent 59.1% of all captured species. Praia da Gamboa was the location with the highest abundance of individuals while Portinho da Areia Norte was the location where larger individuals were collected. It was observed that the size of rockpools affects abundance and density of individuals. Substrate, number and type of shelters also affect density, abundance and the mean size of individuals. Considering the studies focusing on intertidal ichthyofauna worldwide are relatively scarce, and being this ecosystem absolutely crucial both for biological but also socio-economic reasons worldwide, a better understanding of this unique ecosystem is mandatory, so it is possible to understand it, in order to preserve it.

  9. Ichthyoplankton Time Series: A Potential Ocean Observing Network to Provide Indicators of Climate Impacts on Fish Communities along the West Coast of North America

    Science.gov (United States)

    Koslow, J. A.; Brodeur, R.; Duffy-Anderson, J. T.; Perry, I.; jimenez Rosenberg, S.; Aceves, G.

    2016-02-01

    Ichthyoplankton time series available from the Bering Sea, Gulf of Alaska and California Current (Oregon to Baja California) provide a potential ocean observing network to assess climate impacts on fish communities along the west coast of North America. Larval fish abundance reflects spawning stock biomass, so these data sets provide indicators of the status of a broad range of exploited and unexploited fish populations. Analyses to date have focused on individual time series, which generally exhibit significant change in relation to climate. Off California, a suite of 24 midwater fish taxa have declined > 60%, correlated with declining midwater oxygen concentrations, and overall larval fish abundance has declined 72% since 1969, a trend based on the decline of predominantly cool-water affinity taxa in response to warming ocean temperatures. Off Oregon, there were dramatic differences in community structure and abundance of larval fishes between warm and cool ocean conditions. Midwater deoxygenation and warming sea surface temperature trends are predicted to continue as a result of global climate change. US, Canadian, and Mexican fishery scientists are now collaborating in a virtual ocean observing network to synthesize available ichthyoplankton time series and compare patterns of change in relation to climate. This will provide regional indicators of populations and groups of taxa sensitive to warming, deoxygenation and potentially other stressors, establish the relevant scales of coherence among sub-regions and across Large Marine Ecosystems, and provide the basis for predicting future climate change impacts on these ecosystems.

  10. ZOOPLANKTON COMMUNITY STRUCTURE OF THE SEA SURFACE MICROLAYER NEAR NUCLEAR POWER PLANTS AND MARINE FISH CULTURE ZONES IN DAYA BAY

    Institute of Scientific and Technical Information of China (English)

    杨宇峰; 王肇鼎; 潘明祥; 焦念志

    2002-01-01

    The authors' surveys in May-June 1999 (two cruises) at six sampling stations near nuclear power plants (NPP) and marine fish culture zones in Daya Bay, Guangdong, revealed species composition, densities and body-size of thesea surface microlayer (SM) zooplankton (>35 μm). Results showed that protozoans and copepod nauplii were the predominant components, accounting for 65.40% to95.56% of total zooplankton in abundance. The size-frequency distributions showed that the frequency of micro-zooplankton (0.02-0.2 mm) reached 0.8235. The SM zooplankton community structure revealed in the present study was quite different from that revealed by investigations in the 1980s in Daya Bay. Difference of sampling method has important influence on the obtained zooplankton community structure. SM zooplankton consisted of micro- and mesozooplankton (0.2-2.0 mm), with micro-zooplankton being predominant. Some possible cause-effect relations between the zooplankton community structure and mariculture, nuclear power plants cooling systems and sampling method are discussed.``

  11. Evolution of community- and healthcare-associated methicillin-resistant Staphylococcus aureus☆

    Science.gov (United States)

    Uhlemann, Anne-Catrin; Otto, Michael; Lowy, Franklin D.; DeLeo, Frank R.

    2013-01-01

    Staphylococcus aureus is a prominent cause of human infections globally. The high prevalence of infections is compounded by antibiotic resistance—a significant problem for treatment. Methicillin-resistant S. aureus (MRSA) is endemic in hospitals and healthcare facilities worldwide, and is an increasingly common cause of community-associated bacterial infections in industrialized countries. Although much focus is placed on the role of S. aureus as a human pathogen, it is in fact a human commensal organism that has had a relatively long coexistence with the human host. Many S. aureus infections can be explained by host susceptibility or other predisposing risk factors. On the other hand, the emergence/re-emergence of successful S. aureus clones (referred to as epidemic waves) suggests a rapid bacterial adaption and evolution, which includes the emergence of antibiotic resistance and increased virulence and/or transmissibility. It is within this context that we review our understanding of selected S. aureus epidemic waves, and highlight the use of genome sequencing as a means to better understand the evolution of each lineage. PMID:23648426

  12. Environmental monitoring of the Robertson Reservoir (1990-2005) : evolution of the mercury levels in the flesh of fish

    International Nuclear Information System (INIS)

    Therrien, J.

    2006-04-01

    This paper provided details of an environmental monitoring analysis of the stomach contents and mercury levels in the flesh of main fish species in the Robertson Reservoir. The report noted that smelt species were dominant in the reservoir and in the adjoining Ivry Lake, while benthos were dominant the brackish waters of Lake Monger. Sticklebacks were found in the stomachs of the examined fish, while the diet of brook trout was comprised mainly of benthos in lakes and reservoirs. Arctic char mainly ate benthos in the reservoir. Landlocked salmon mainly ate fish in the reservoirs and lakes. Smelt was the primary diet of Arctic char until 2003. After 2003, Arctic char fed mainly on sticklebacks. It was observed that average mercury levels of fish of a standardized length increased by a factor of 2.7 to 4.9 after the impoundment of the reservoir. However, average mercury levels stopped increasing for dwarf Arctic char in 2003. Levels of mercury in brook trout have not increased since 1999. A significant decrease in mercury levels of rainbow smelt were observed. Average mercury levels of fish in the brackish waters of Lake Monger were lower than levels observed in most other freshwater lakes in the region. It was concluded that the number of monthly meals recommended by the fish consumption guide produced in 2001 for the Gros Mecatina region are still appropriate for the reservoir

  13. Evaluation of mercury, selenium and methylmercury in fish consumed by Santos Bay communities, Sao Paulo, Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Farias, Luciana A.; Favaro, Deborah I.T. [Instituto de Pesquisas Energeticas e Nucleares (IPEN), Sao Paulo, SP (Brazil)]. E-mail: lufarias@usp.br; Azevedo, Juliana de S.; Braga, Elisabete S. [Sao Paulo Univ., SP (Brazil). Inst. Oceanografico. Lab. de Nutrientes, Micronutrientes e Tracos no Mar (LABNUT)]. E-mail: juliana@io.usp.br

    2005-07-01

    In the present study, mercury and selenium levels were evaluated in fish tissues and fish organs in the Santos Bay, Sao Paulo State, southeastern Brazil. Santos Bay waters are polluted by the large industrial complex of Cubatao. The estuary system filters part of this pollution before it reaches the Bay. Mercury and methylmercury determination were performed using Cold Vapor Atomic Absorption Spectrometry (CV-AAS) and selenium determination by Instrumental Neutron Activation Analysis (INAA). Methodology validation for the determination of these elements was carried out by means of reference materials analyses. There was no significant correlation between mercury and selenium concentrations (n = 17, (r2 ) R2 = 0.3482, p = 0.1709) in Cathorops spixii (bagre amarelo)- Ariidae family and Centropomus sp. (robalo)- Centropomidae family livers. Mercury and methylmercury concentrations in muscle from carnivorous species: Ariidae Cathorops spixii (bagre amarelo), Scianidae Steliffer rastifer (cangoa) and Scianidae Paralonchurus brasiliensis (maria-luiza) were determined and discussed. Total mercury concentration in Ariidae Catharops spixii livers presented the highest Hg level (7.6 mg kg-1). Although the Santos Bay is less contaminated than the inner section of its estuary system (Cubatao), it presents signs of environmental impact. (author)

  14. Fish Biodiversity Patterns in Reef Communities of the Southeastern Coast of Brazil

    Directory of Open Access Journals (Sweden)

    Ralf Riedel

    2015-10-01

    Full Text Available Marine Protected Areas are increasingly becoming a tool of choice for conservation and management of marine resources and ecosystems. Data on biodiversity are necessary to assist in establishing protected areas for conservation objectives to be met. Toward that effect, we investigated reef biodiversity patterns in three large-scale coastal regions of Brazil. The study areas comprised of an upwelling region, an adjacent high impacted region, and a more distant marine park. We surveyed four reef sites in each study region. Fish species and abundance, substrate relief, and water temperature were recorded during the surveys. Biodiversity was estimated using Simpson’s and Shannon’s indices on species richness and abundance. Fish diversity was highest at the upwelling area. No difference in diversity was observed between the high impacted region and the marine park. No substrate relief patterns were found. Temperature readings showed higher frequency of low temperature episodic events at the upwelling region. Our results favor the upwelling region for establishment of a Marine Protected Area. Moreover, the similar diversity between the high impacted region and the marine park showed evidence of spillover effects from the upwelling into the high impacted region, further demonstrating the importance of the upwelling region for conservation.

  15. Gill monogenean communities on three commercially important sparid fish in Omani waters

    Directory of Open Access Journals (Sweden)

    Gilha Yoon

    2015-01-01

    Full Text Available The prevalence and intensity of polyopisthocotylean monogeneans on the gills of three commercially important species of sparid caught in Omani coastal waters close to the city port of Muscat were determined and compared. Throughout May 2012 to April 2013, infections on bi-weekly samples of the soldier seabream, Argyrops filamentosus (Valenciennes, 1830, the king soldier seabream, Argyrops spinifer (Forsskål, 1775, and, the silver seabream, Rhabdosargus sabra were evaluated. From a total of 200 specimens (standard length of 26–52 cm, caught by line angling or by traps, at least three species of gill monogenean, namely Omanicotyle [Bivagina] heterospina, Heteromicrocotyla sp. and Microcotyle sp., were commonly encountered. Silver bream, which was infected by all three monogeneans, bore the highest infections (100% prevalence; mean intensity of 20.14 ± 0.92 parasites fish-1, whilst the soldier bream, which was infected only by O. heterospina had the lowest levels of infection (of the three sparids with 63.8% prevalence; mean intensity 5.8 ± 0.17 parasites fish-1. Comments on the distribution of monogeneans on each host are provided but to what extent this is influenced by water current speeds passing through the buccal and opercular cavities, gill morphology, parasite size, and / or the morphology and efficiency of the parasite’s attachment apparatus requires establishing and forms the basis of ongoing investigations.

  16. Evaluation of mercury, selenium and methylmercury in fish consumed by Santos Bay communities, Sao Paulo, Brazil

    International Nuclear Information System (INIS)

    Farias, Luciana A.; Favaro, Deborah I.T.; Azevedo, Juliana de S.; Braga, Elisabete S.

    2005-01-01

    In the present study, mercury and selenium levels were evaluated in fish tissues and fish organs in the Santos Bay, Sao Paulo State, southeastern Brazil. Santos Bay waters are polluted by the large industrial complex of Cubatao. The estuary system filters part of this pollution before it reaches the Bay. Mercury and methylmercury determination were performed using Cold Vapor Atomic Absorption Spectrometry (CV-AAS) and selenium determination by Instrumental Neutron Activation Analysis (INAA). Methodology validation for the determination of these elements was carried out by means of reference materials analyses. There was no significant correlation between mercury and selenium concentrations (n = 17, (r2 ) R2 = 0.3482, p = 0.1709) in Cathorops spixii (bagre amarelo)- Ariidae family and Centropomus sp. (robalo)- Centropomidae family livers. Mercury and methylmercury concentrations in muscle from carnivorous species: Ariidae Cathorops spixii (bagre amarelo), Scianidae Steliffer rastifer (cangoa) and Scianidae Paralonchurus brasiliensis (maria-luiza) were determined and discussed. Total mercury concentration in Ariidae Catharops spixii livers presented the highest Hg level (7.6 mg kg-1). Although the Santos Bay is less contaminated than the inner section of its estuary system (Cubatao), it presents signs of environmental impact. (author)

  17. Spatio-temporal patterns in the coral reef communities of the Spermonde Archipelago, 2012–2014, II: Fish assemblages display structured variation related to benthic condition

    DEFF Research Database (Denmark)

    Plass-Johnson, Jeremiah Grahm; Teichberg, Mirta; Bednarz, Vanessa N.

    2018-01-01

    The Spermonde Archipelago is a complex of ~70 mostly populated islands off Southw