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Sample records for fish atlantic cod

  1. Ocean Acidification Effects on Atlantic Cod Larval Survival and Recruitment to the Fished Population

    Science.gov (United States)

    Stiasny, Martina H.; Mittermayer, Felix H.; Sswat, Michael; Voss, Rüdiger; Jutfelt, Fredrik; Chierici, Melissa; Puvanendran, Velmurugu; Mortensen, Atle; Reusch, Thorsten B. H.; Clemmesen, Catriona

    2016-01-01

    How fisheries will be impacted by climate change is far from understood. While some fish populations may be able to escape global warming via range shifts, they cannot escape ocean acidification (OA), an inevitable consequence of the dissolution of anthropogenic carbon dioxide (CO2) emissions in marine waters. How ocean acidification affects population dynamics of commercially important fish species is critical for adapting management practices of exploited fish populations. Ocean acidification has been shown to impair fish larvae’s sensory abilities, affect the morphology of otoliths, cause tissue damage and cause behavioural changes. Here, we obtain first experimental mortality estimates for Atlantic cod larvae under OA and incorporate these effects into recruitment models. End-of-century levels of ocean acidification (~1100 μatm according to the IPCC RCP 8.5) resulted in a doubling of daily mortality rates compared to present-day CO2 concentrations during the first 25 days post hatching (dph), a critical phase for population recruitment. These results were consistent under different feeding regimes, stocking densities and in two cod populations (Western Baltic and Barents Sea stock). When mortality data were included into Ricker-type stock-recruitment models, recruitment was reduced to an average of 8 and 24% of current recruitment for the two populations, respectively. Our results highlight the importance of including vulnerable early life stages when addressing effects of climate change on fish stocks. PMID:27551924

  2. Ocean Acidification Effects on Atlantic Cod Larval Survival and Recruitment to the Fished Population.

    Science.gov (United States)

    Stiasny, Martina H; Mittermayer, Felix H; Sswat, Michael; Voss, Rüdiger; Jutfelt, Fredrik; Chierici, Melissa; Puvanendran, Velmurugu; Mortensen, Atle; Reusch, Thorsten B H; Clemmesen, Catriona

    2016-01-01

    How fisheries will be impacted by climate change is far from understood. While some fish populations may be able to escape global warming via range shifts, they cannot escape ocean acidification (OA), an inevitable consequence of the dissolution of anthropogenic carbon dioxide (CO2) emissions in marine waters. How ocean acidification affects population dynamics of commercially important fish species is critical for adapting management practices of exploited fish populations. Ocean acidification has been shown to impair fish larvae's sensory abilities, affect the morphology of otoliths, cause tissue damage and cause behavioural changes. Here, we obtain first experimental mortality estimates for Atlantic cod larvae under OA and incorporate these effects into recruitment models. End-of-century levels of ocean acidification (~1100 μatm according to the IPCC RCP 8.5) resulted in a doubling of daily mortality rates compared to present-day CO2 concentrations during the first 25 days post hatching (dph), a critical phase for population recruitment. These results were consistent under different feeding regimes, stocking densities and in two cod populations (Western Baltic and Barents Sea stock). When mortality data were included into Ricker-type stock-recruitment models, recruitment was reduced to an average of 8 and 24% of current recruitment for the two populations, respectively. Our results highlight the importance of including vulnerable early life stages when addressing effects of climate change on fish stocks.

  3. Harvest Pressure on Coastal Atlantic Cod (Gadus morhua) from Recreational Fishing Relative to Commercial Fishing Assessed from Tag-Recovery Data.

    Science.gov (United States)

    Kleiven, Alf Ring; Fernandez-Chacon, Albert; Nordahl, Jan-Harald; Moland, Even; Espeland, Sigurd Heiberg; Knutsen, Halvor; Olsen, Esben Moland

    2016-01-01

    Marine recreational fishing is a popular outdoor activity. However, knowledge about the magnitude of recreational catches relative to commercial catches in coastal fisheries is generally sparse. Coastal Atlantic cod (Gadus morhua) is a target species for recreational fishers in the North Atlantic. In Norway, recreational fishers are allowed to use a variety of traps and nets as well as long-line and rod and line when fishing for cod. From 2005 to 2013, 9729 cod (mean size: 40 cm, range: 15-93 cm) were tagged and released in coastal Skagerrak, southeast Norway. Both high-reward (NOK 500) and low-reward tags (NOK 50) were used in this study. Because some harvested fish (even those posting high-reward tags) may go unreported by fishers, reporting rates were estimated from mark-recovery models that incorporate detection parameters in their structure, in addition to survival and mortality estimates. During 2005 to 2013, a total of 1707 tagged cod were recovered and reported by fishers. We estimate the overall annual survival to be 33% (SE 1.5). Recreational rod and line fishing were responsible for 33.7% (SE 2.4) of total mortality, followed by commercial fisheries (15.1% SE 0.8) and recreational fixed gear (6.8% SE 0.4). Natural mortality was 44.4% (SE 2.5) of total mortality. Our findings suggest that recreational fishing-rod and line fishing in particular-is responsible for a substantial part of fishing mortality exerted on coastal cod in southern Norway.

  4. Harvest Pressure on Coastal Atlantic Cod (Gadus morhua from Recreational Fishing Relative to Commercial Fishing Assessed from Tag-Recovery Data.

    Directory of Open Access Journals (Sweden)

    Alf Ring Kleiven

    Full Text Available Marine recreational fishing is a popular outdoor activity. However, knowledge about the magnitude of recreational catches relative to commercial catches in coastal fisheries is generally sparse. Coastal Atlantic cod (Gadus morhua is a target species for recreational fishers in the North Atlantic. In Norway, recreational fishers are allowed to use a variety of traps and nets as well as long-line and rod and line when fishing for cod. From 2005 to 2013, 9729 cod (mean size: 40 cm, range: 15-93 cm were tagged and released in coastal Skagerrak, southeast Norway. Both high-reward (NOK 500 and low-reward tags (NOK 50 were used in this study. Because some harvested fish (even those posting high-reward tags may go unreported by fishers, reporting rates were estimated from mark-recovery models that incorporate detection parameters in their structure, in addition to survival and mortality estimates. During 2005 to 2013, a total of 1707 tagged cod were recovered and reported by fishers. We estimate the overall annual survival to be 33% (SE 1.5. Recreational rod and line fishing were responsible for 33.7% (SE 2.4 of total mortality, followed by commercial fisheries (15.1% SE 0.8 and recreational fixed gear (6.8% SE 0.4. Natural mortality was 44.4% (SE 2.5 of total mortality. Our findings suggest that recreational fishing-rod and line fishing in particular-is responsible for a substantial part of fishing mortality exerted on coastal cod in southern Norway.

  5. Characterization of Francisella sp., GM2212, the first Francisella isolate from marine fish, Atlantic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Ottem, Karl F; Nylund, Are; Karlsbakk, Egil;

    2007-01-01

    A Francisella sp., isolate GM2212(T), previously isolated from diseased farmed Atlantic cod Gadus morhua in Norway is characterized. The complete 16S rDNA, 16S-23S intergenic spacer, 23S rDNA, 23S-5S intergenic spacer, 5S rDNA, FopA, lipoprotein TUL4 (LpnA), malate dehydrogenase and a hypothetical...

  6. What is the carrying capacity for fish in the ocean? A meta analysis of population dynamics of North Atlantic cod

    DEFF Research Database (Denmark)

    Myers, R.A.; MacKenzie, Brian; Bowen, K.G.;

    2001-01-01

    model 21 Atlanic cod (Gadus morhua) stocks in the North Atlantic assuming that the maximum reproductive rate and the carrying capacity per unit area are random variables. This method uses a nonlinear mixed model and is a natural approach to investigate how carrying capacity varies among populations. We...... used empirical Bayes techniques to estimate the maximum reproductive rate and carrying capacity of each stock. In all cases, the empirical Bayes estimates were biologically reasonable, whereas a stock by stock analysis occasionally yielded nonsensical parameter estimates (e.g., infinite values). Our...... analysis showed that the carrying capacity per unit area varied by more than 20-fold among populations and that much of this variation was related to temperature. That is, the carrying capacity per square kilometre declines as temperature increases....

  7. Occurrence of anisakid nematodes in Atlantic cod (Gadus morhua) and Greenland cod (Gadus ogac), West Greenland

    DEFF Research Database (Denmark)

    Mouritsen, Kim N.; Hedeholm, Rasmus; Schack, Henriette B.;

    2010-01-01

    Anisakid nematodes commonly infect gadids, and are of economic and aesthetic importance to the commercial fishing industry in Greenland as some species are pathogenic to humans. However, very little is known about the occurrence of these parasites and their impact on the hosts in Greenland waters....... During a survey in 2005, stomach sample of 227 Atlantic cod (Gadus morhua) and 64 Greenland cod (Gadus ogac) was collected in Godthaab and Sisimiut fiord systems in West Greenland waters. All cod were dissected for stomach contents and anisakid nematodes were removed from the visceral cavity. Third stage...... nematode species regarding prevalence of infection and mean infection intensity was evident, and there was no relationship between fish condition and the intensity of nematode infections. Standardised for size, capelin-eating cod were in better condition and more heavily infected than fish subsisting...

  8. Iodine nutrition and toxicity in Atlantic cod (Gadus morhua larvae

    Directory of Open Access Journals (Sweden)

    S Penglase

    2013-02-01

    Full Text Available Copepods as feed promote better growth and development in marine fish larvae than rotifers. However, unlike rotifers, copepods contain several minerals such as iodine (I, at potentially toxic levels. Iodine is an essential trace element and both under and over supply of I can inhibit the production of the I containing thyroid hormones. It is unknown whether marine fish larvae require copepod levels of I or if mechanisms are present that prevent I toxicity. In this study, larval Atlantic cod (Gadus morhua were fed rotifers enriched to intermediate (26 mg I kg-1 dry weight; MI group or copepod (129 mg I kg-1 DW; HI group I levels and compared to cod larvae fed control rotifers (0.6 mg I kg-1 DW. Larval I concentrations were increased by 3 (MI and 7 (HI fold compared to controls during the rotifer feeding period. No differences in growth were observed, but the HI diet increased thyroid follicle colloid to epithelium ratios, and affected the essential element concentrations of larvae compared to the other groups. The thyroid follicle morphology in the HI larvae is typical of colloid goitre, a condition resulting from excessive I intake, even though whole body I levels were below those found previously in copepod fed cod larvae. This is the first observation of dietary induced I toxicity in fish, and suggests I toxicity may be determined to a greater extent by bioavailability and nutrient interactions than by total body I concentrations in fish larvae. Rotifers with 0.6 mg I kg-1 DW appeared sufficient to prevent gross signs of I deficiency in cod larvae reared with continuous water exchange, while modelling of cod larvae versus rotifer I levels suggests that optimum I levels in rotifers for cod larvae is 3.5 mg I kg-1 DW.

  9. Proteome reference map of the skin mucus of Atlantic cod (Gadus morhua) revealing immune competent molecules

    NARCIS (Netherlands)

    Rajan, B.; Fernandes, J.M.O.; Caipang, C.M.A.; Kiron, V.; Rombout, J.H.W.M.; Brinchmann, M.

    2011-01-01

    The skin mucosal proteome of Atlantic cod (Gadus morhua) was mapped using a 2D PAGE, LC–MS/MS coupled approach. Mucosal proteins from naive fish were identified primarily by similarity searches across various cod EST databases. The identified proteins were clustered into 8 groups based on gene ontol

  10. Exophiala angulospora causes systemic inflammation in atlantic cod Gadus morhua.

    Science.gov (United States)

    Gjessing, Mona Cecilie; Davey, Marie; Kvellestad, Agnar; Vrålstad, Trude

    2011-10-06

    Species of Exophiala are opportunistic fungal pathogens that may infect a broad range of warm- and cold-blooded animals, including salmonids and Atlantic cod. In the present study, we observed abnormal swimming behaviour and skin pigmentation and increased mortality in cod kept in an indoor tank. Necropsy revealed foci of different sizes with a greyish to brownish colour in internal organs of diseased fish. The foci consisted of ramifying darkly pigmented fungal hyphae surrounded by distinct layers of inflammatory cells, including macrophage-like cells. In the inner layer with many hyphae, the macrophage-like cells were dead. We observed no apparent restriction of fungal growth by the inflammatory response. A darkly pigmented fungus was repeatedly isolated in pure culture from foci of diseased fish and identified as Exophiala angulospora using morphological and molecular characters. This species has not been previously reported to cause disease in cod, but has been reported as an opportunistic pathogen of both marine and freshwater fish. Based on the morphology and sequence analysis presented here, we conclude that E. angulospora caused the observed chronic multifocal inflammation in internal organs of cod, leading to severe disease and mortality.

  11. Characterization of Atlantic Cod Spawning Habitat and Behavior in Icelandic Coastal Waters

    OpenAIRE

    Timothy B Grabowski; Kevin M Boswell; McAdam, Bruce J.; R J David Wells; Guđrún Marteinsdóttir

    2012-01-01

    The physical habitat used during spawning may potentially be an important factor affecting reproductive output of broadcast spawning marine fishes, particularly for species with complex, substrate-oriented mating systems and behaviors, such as Atlantic cod Gadus morhua. We characterized the habitat use and behavior of spawning Atlantic cod at two locations off the coast of southwestern Iceland during a 2-d research cruise (15-16 April 2009). We simultaneously operated two different active hyd...

  12. Automatic feeding and Harvesting of Juvenile Atlantic Cod (Gadus Morhua L. in a Pond

    Directory of Open Access Journals (Sweden)

    V. Øiestad

    1987-01-01

    Full Text Available Large scale production of juvenile Atlantic cod has been carried out since 1980 in a saltwater pond. A break-through was obtained in 1983 with high survival rates of cod larvae to metamorphosis. In 1985 we made progress in two fiels, reduced cannibalism and automatic harvesting. Juvenile cod formed large schools while fed dry pellets in the currents set up by five propellers. An underwater loudspeaker was programmed to give sound pulses just before feeding. During harvesting dry pellets were released inside a fish trap while giving the sound signals the cod juveniles were conditioned to. The cod readily entered the trap and a computer-controlled fish pump transported the fish from the fish trap into a storing tank and grading grids. The trap gradually emptied the pond of fish and more than 80

  13. Harvesting Atlantic Cod under Climate Variability

    Science.gov (United States)

    Oremus, K. L.

    2016-12-01

    Previous literature links the growth of a fishery to climate variability. This study uses an age-structured bioeconomic model to compare optimal harvest in the Gulf of Maine Atlantic cod fishery under a variable climate versus a static climate. The optimal harvest path depends on the relationship between fishery growth and the interest rate, with higher interest rates dictating greater harvests now at the cost of long-term stock sustainability. Given the time horizon of a single generation of fishermen under assumptions of a static climate, the model finds that the economically optimal management strategy is to harvest the entire stock in the short term and allow the fishery to collapse. However, if the biological growth of the fishery is assumed to vary with climate conditions, such as the North Atlantic Oscillation, there will always be pulses of high growth in the stock. During some of these high-growth years, the growth of the stock and its economic yield can exceed the growth rate of the economy even under high interest rates. This implies that it is not economically optimal to exhaust the New England cod fishery if NAO is included in the biological growth function. This finding may have theoretical implications for the management of other renewable yet exhaustible resources whose growth rates are subject to climate variability.

  14. Restricted fish feeding reduces cod otolith opacity

    DEFF Research Database (Denmark)

    Høie, H.; Folkvord, A.; Mosegaard, Henrik

    2008-01-01

    The purpose of this work was to examine the effect of reduced feeding and constant temperature on cod otolith opacity. Three groups of juvenile cod were given restricted food rations at different times for 4 months, resulting in depressed somatic growth. Otolith opacity was measured on pictures...... in otolith opacity were found between individual fish both within groups and between groups. In two of the three groups significantly more translucent otolith material was deposited in response to reduced feeding. Our results show that variations in feeding and hence fish growth resulted in variation...

  15. Atlantic cod (Gadus morhua hemoglobin genes: multiplicity and polymorphism

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    Gamperl A Kurt

    2009-09-01

    Full Text Available Abstract Background Hemoglobin (Hb polymorphism, assessed by protein gel electrophoresis, has been used almost exclusively to characterize the genetic structure of Atlantic cod (Gadus morhua populations and to establish correlations with phenotypic traits such as Hb oxygen binding capacity, temperature tolerance and growth characteristics. The genetic system used to explain the results of gel electrophoresis entails the presence of one polymorphic locus with two major alleles (HbI-1; HbI-2. However, vertebrates have more than one gene encoding Hbs and recent studies have reported that more than one Hb gene is present in Atlantic cod. These observations prompted us to re-evaluate the number of Hb genes expressed in Atlantic cod, and to perform an in depth search for polymorphisms that might produce relevant phenotypes for breeding programs. Results Analysis of Expressed Sequence Tags (ESTs led to the identification of nine distinct Hb transcripts; four corresponding to the α Hb gene family and five to the β Hb gene family. To gain insights about the Hb genes encoding these transcripts, genomic sequence data was generated from heterozygous (HbI-1/2 parents and fifteen progeny; five of each HbI type, i.e., HbI-1/1, HbI-1/2 and HbI-2/2. β Hb genes displayed more polymorphism than α Hb genes. Two major allele types (β1A and β1B that differ by two linked non-synonymous substitutions (Met55Val and Lys62Ala were found in the β1 Hb gene, and the distribution of these β1A and β1B alleles among individuals was congruent with that of the HbI-1 and HbI-2 alleles determined by protein gel electrophoresis. RT-PCR and Q-PCR analysis of the nine Hb genes indicates that all genes are expressed in adult fish, but their level of expression varies greatly; higher expression of almost all Hb genes was found in individuals displaying the HbI-2/2 electrophoretic type. Conclusion This study indicates that more Hb genes are present and expressed in adult

  16. Atlantic Cod Show a Highly Variable Sensitivity to Electric-Induced Spinal Injuries

    NARCIS (Netherlands)

    Soetaert, M.; Haan, de D.; Verschueren, B.; Decostere, A.; Puvanendran, V.; Saunders, J.; Polet, H.; Chiers, K.

    2016-01-01

    Pulse trawling is the most promising alternative to conventional beam trawls targeting Sole Solea solea (also known as Solea vulgaris), but due to the electric fields created by electrotrawls spinal injuries are reported in gadoid round fishes such as Atlantic Cod Gadus morhua. This study aimed t

  17. Differential expression of immune and stress genes in the skin of Atlantic cod (Gadus morhua)

    NARCIS (Netherlands)

    Caipang, C.M.A.; Lazado, C.C.; Brinchmann, M.; Rombout, J.H.W.M.; Kiron, V.

    2011-01-01

    The present study describes the transcriptional profiles of selected immune and stress genes with putative important roles in the cutaneous immune defense of Atlantic cod (Gadus morhua). In addition it shows differential expression of many genes at the dorsal and ventral sides of fish, in general ha

  18. Characterization of Atlantic cod spawning habitat and behavior in Icelandic coastal waters.

    Directory of Open Access Journals (Sweden)

    Timothy B Grabowski

    Full Text Available The physical habitat used during spawning may potentially be an important factor affecting reproductive output of broadcast spawning marine fishes, particularly for species with complex, substrate-oriented mating systems and behaviors, such as Atlantic cod Gadus morhua. We characterized the habitat use and behavior of spawning Atlantic cod at two locations off the coast of southwestern Iceland during a 2-d research cruise (15-16 April 2009. We simultaneously operated two different active hydroacoustic gear types, a split beam echosounder and a dual frequency imaging sonar (DIDSON, as well as a remotely operated underwater vehicle (ROV. A total of five fish species were identified through ROV surveys: including cusk Brosme brosme, Atlantic cod, haddock Melanogrammus aeglefinus, lemon sole Microstomus kitt, and Atlantic redfish Sebastes spp. Of the three habitats identified in the acoustic surveys, the transitional habitat between boulder/lava field and sand habitats was characterized by greater fish density and acoustic target strength compared to that of sand or boulder/lava field habitats independently. Atlantic cod were observed behaving in a manner consistent with published descriptions of spawning. Individuals were observed ascending 1-5 m into the water column from the bottom at an average vertical swimming speed of 0.20-0.25 m s(-1 and maintained an average spacing of 1.0-1.4 m between individuals. Our results suggest that cod do not choose spawning locations indiscriminately despite the fact that it is a broadcast spawning fish with planktonic eggs that are released well above the seafloor.

  19. Characterization of Atlantic cod spawning habitat and behavior in Icelandic coastal waters.

    Science.gov (United States)

    Grabowski, Timothy B; Boswell, Kevin M; McAdam, Bruce J; Wells, R J David; Marteinsdóttir, Guđrún

    2012-01-01

    The physical habitat used during spawning may potentially be an important factor affecting reproductive output of broadcast spawning marine fishes, particularly for species with complex, substrate-oriented mating systems and behaviors, such as Atlantic cod Gadus morhua. We characterized the habitat use and behavior of spawning Atlantic cod at two locations off the coast of southwestern Iceland during a 2-d research cruise (15-16 April 2009). We simultaneously operated two different active hydroacoustic gear types, a split beam echosounder and a dual frequency imaging sonar (DIDSON), as well as a remotely operated underwater vehicle (ROV). A total of five fish species were identified through ROV surveys: including cusk Brosme brosme, Atlantic cod, haddock Melanogrammus aeglefinus, lemon sole Microstomus kitt, and Atlantic redfish Sebastes spp. Of the three habitats identified in the acoustic surveys, the transitional habitat between boulder/lava field and sand habitats was characterized by greater fish density and acoustic target strength compared to that of sand or boulder/lava field habitats independently. Atlantic cod were observed behaving in a manner consistent with published descriptions of spawning. Individuals were observed ascending 1-5 m into the water column from the bottom at an average vertical swimming speed of 0.20-0.25 m s(-1) and maintained an average spacing of 1.0-1.4 m between individuals. Our results suggest that cod do not choose spawning locations indiscriminately despite the fact that it is a broadcast spawning fish with planktonic eggs that are released well above the seafloor.

  20. Low plastic ingestion rate in Atlantic cod (Gadus morhua) from Newfoundland destined for human consumption collected through citizen science methods.

    Science.gov (United States)

    Liboiron, Max; Liboiron, France; Wells, Emily; Richárd, Natalie; Zahara, Alexander; Mather, Charles; Bradshaw, Hillary; Murichi, Judyannet

    2016-12-15

    Marine microplastics are a contaminant of concern because their small size allows ingestion by a wide range of marine life. Using citizen science during the Newfoundland recreational cod fishery, we sampled 205 Atlantic cod (Gadus morhua) destined for human consumption and found that 5 had eaten plastic, an ingestion prevalence rate of 2.4%. This ingestion rate for Atlantic cod is the second lowest recorded rate in the reviewed published literature (the lowest is 1.4%), and the lowest for any fish in the North Atlantic. This is the first report for plastic ingestion in fish in Newfoundland, Canada, a province dependent on fish for sustenance and livelihoods. Copyright © 2016 Elsevier Ltd. All rights reserved.

  1. Time matters: post-surgical recovery of gastric evacuation rate in Atlantic cod

    DEFF Research Database (Denmark)

    Behrens, Jane; Gräns, Albin; Andersen, Niels Gerner;

    GER was affected after surgically introducing dummies of a blood-flow biotelemetry system into the abdominal cavity of Atlantic cod. Two days post surgery the cod with implants were, together with a control group, force-fed a standardized meal and the stomach contents recovered 24h later....... This procedure was repeated for both groups of fish after one additional week of recovery. After two days GER was significantly lower in the group of fish with surgical implants compared to the control group, but the difference was not maintained after one additional week of recovery. We conclude that 10 days...... of postsurgical recovery will stabilize GER in cod. The results indicate that the presence of the implant per se did not affect GER but that the effects observed came from surgery and/or postsurgical stress. 10 days should consequently be a starting point for future studies even if longer recovery periods...

  2. Potential Use of Atlantic Cod Trypsin in Biomedicine

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    Ágústa Gudmundsdóttir

    2013-01-01

    Full Text Available Surface proteins of viruses and bacteria used for cell attachment and invasion are candidates for degradation by proteases. Trypsin from Atlantic cod (Gadus morhua was previously demonstrated to have efficacy against influenza viruses in vitro and on skin. In this paper, cod trypsin is shown to be 3–12 times more effective in degrading large native proteins than its mesophilic analogue, bovine trypsin. This is in agreement with previous findings where cod trypsin was found to be the most active among twelve different proteases in cleaving various cytokines and pathological proteins. Furthermore, our results show that cod trypsin has high efficacy against herpes simplex virus type 1 (HSV-1 and the respiratory syncytial virus (RSV in vitro. The results on the antipathogenic properties of cod trypsin are important because rhinovirus, RSV, and influenza are the most predominant pathogenic viruses in upper respiratory tract infections. Results from a clinical study presented in this paper show that a specific formulation containing cod trypsin was preferred for wound healing over other methods used in the study. Apparently, the high digestive ability of the cold-adapted cod trypsin towards large native proteins plays a role in its efficacy against pathogens and its positive effects on wounds.

  3. Behavioral responses of Atlantic cod to sea temperature changes.

    Science.gov (United States)

    Freitas, Carla; Olsen, Esben Moland; Moland, Even; Ciannelli, Lorenzo; Knutsen, Halvor

    2015-05-01

    Understanding responses of marine species to temperature variability is essential to predict impacts of future climate change in the oceans. Most ectotherms are expected to adjust their behavior to avoid extreme temperatures and minimize acute changes in body temperature. However, measuring such behavioral plasticity in the wild is challenging. Combining 4 years of telemetry-derived behavioral data on juvenile and adult (30-80 cm) Atlantic cod (Gadus morhua), and in situ ocean temperature measurements, we found a significant effect of sea temperature on cod depth use and activity level in coastal Skagerrak. During summer, cod were found in deeper waters when sea surface temperature increased. Further, this effect of temperature was stronger on larger cod. Diel vertical migration, which consists in a nighttime rise to shallow feeding habitats, was stronger among smaller cod. As surface temperature increased beyond ∼15°C, their vertical migration was limited to deeper waters. In addition to larger diel vertical migrations, smaller cod were more active and travelled larger distances compared to larger specimens. Cold temperatures during winter tended, however, to reduce the magnitude of diel vertical migrations, as well as the activity level and distance moved by those smaller individuals. Our findings suggest that future and ongoing rises in sea surface temperature may increasingly deprive cod in this region from shallow feeding areas during summer, which may be detrimental for local populations of the species.

  4. Physiological and behavioural responses to noxious stimuli in the Atlantic cod (Gadus morhua.

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    Jared R Eckroth

    Full Text Available In the present study, our aim was to compare physiological and behavioural responses to different noxious stimuli to those of a standardized innocuous stimulus, to possibly identify aversive responses indicative of injury detection in a commercially important marine teleost fish, the Atlantic cod. Individual fish were administered with a noxious stimulus to the lip under short-term general anaesthesia (MS-222. The noxious treatments included injection of 0.1% or 2% acetic acid, 0.005% or 0.1% capsaicin, or piercing the lip with a commercial fishing hook. Counts of opercular beat rate (OBR at 10, 30, 60, 90 and 120 min and observations of behaviour at 30 and 90 min post-treatment were compared with pre-treatment values and with control fish injected with physiological saline, an innocuous stimulus. Circulatory levels of physiological stress indicators were determined in all fish at 120 minutes post-treatment. All treatments evoked temporarily increased OBR that returned to pre-treatment levels at 60 minutes (saline, 0.005% capsaicin, hook, 90 minutes (0.1% acetic acid, 0.1% capsaicin, or 120 minutes (2% acetic acid, but with no significant differences from the control group at any time point. Fish treated with 0.1% and 2% acetic acid and 0.1% capsaicin displayed increased hovering close to the bottom of the aquaria and fish given 2% acetic acid and 0.1% capsaicin also displayed a reduced use of shelter. The only effect seen in hooked fish was brief episodes of lateral head shaking which were not seen pre-treatment or in the other groups, possibly reflecting a resiliency to tissue damage in the mouth area related to the tough nature of the Atlantic cod diet. There were no differences between groups in circulatory stress indicators two hours after treatment. This study provides novel data on behavioural indicators that could be used to assess potentially aversive events in Atlantic cod.

  5. Productivity patterns and abundance-area relationships in 3 marine fish species (cod,herring and haddock); meta-analyses on the effects of temperature, life-history andhabitat size across the N Atlantic

    DEFF Research Database (Denmark)

    Mantzouni, Irene; MacKenzie, Brian

    on the biological and ecological characteristics of thestocks. Our aim was to identify the patterns of the temperature, habitat size and life-historyeffects on the SR dynamics across the N Atlantic range of 3 species; cod (21 stocks), herring(16 stocks) and haddock (7 stocks). Using hierarchical, Bayesian SR models...

  6. Effects of perimortem stress on farmed Atlantic cod product quality: a baseline study.

    Science.gov (United States)

    Erikson, Ulf; Digre, Hanne; Misimi, Ekrem

    2011-05-01

    The potential effects of handling stress on the product quality of farmed Atlantic cod were studied in a controlled experiment (fish anesthetized with metomidate or isoeugenol, or subjected to stress by chasing for 30 min). For comparison, stress and fillet quality was also studied for commercially slaughtered farmed cod (fish sampled from waiting cage, after pumping and stunning with carbon dioxide, and after bleeding and chilling). Baseline values for stress-related parameters (blood chemistry, muscle high-energy phosphates and inosine monophospate, initial pH, muscle twitches, and rigor mortis) of rested Atlantic cod have been established. Since our stress bout showed that this species was not easily excitable, we were less convinced that we actually did study the other extreme, namely, exhausted fish. Nevertheless, the present data from the commercial slaughter of cod suggested that our stress bout was of adequate magnitude to represent potential poor handling routines. Our results consistently showed largely no differences between treatments, and that perimortem handling stress did not cause inferior flesh quality. This suggested that farmed cod can be processed with little risk of reducing product quality (quality index, fillet water content, water-holding capacity, ultimate pH, adenosine triphosphate-related degradation products and K-value, skin and fillet color, water and salt-soluble proteins, hardness, and gaping). For better maintenance of skin appearance after storage, the importance of storing the gutted cod on the belly, avoiding direct contact between skin and crushed ice, is demonstrated. © 2011 Institute of Food Technologists®

  7. Structure of chymotrypsin variant B from Atlantic cod, Gadus morhua

    DEFF Research Database (Denmark)

    Leth-Larsen, Rikke; Asgeirsson, B; Thórólfsson, M

    1996-01-01

    The amino-acid sequence of chymotrypsin variant B isolated from the pyloric caeca of Atlantic cod has been elucidated. The characterization of the primary structure is based on N-terminal Edman degradation and mass spectrometry of the native protein and enzymatically derived peptides. Chymotrypsin...... side-chains may contribute to the maintenance of flexibility at low temperatures. Several amino-acid sequence differences adjacent to the catalytic site are observed in the two cod chymotrypsin variants which also differ in kinetic properties. Unlike the mammalian chymotrypsins, which contain several...

  8. Acoustically Induced Streaming Flows near a Model Cod Otolith and their Potential Implications for Fish Hearing

    Energy Technology Data Exchange (ETDEWEB)

    Kotas, Charlotte W [ORNL; Rogers, Peter [Georgia Institute of Technology; Yoda, Minami [Georgia Institute of Technology

    2011-01-01

    The ears of fishes are remarkable sensors for the small acoustic disturbances associated with underwater sound. For example, each ear of the Atlantic cod (Gadus morhua) has three dense bony bodies (otoliths) surrounded by fluid and tissue, and detects sounds at frequencies from 30 to 500 Hz. Atlantic cod have also been shown to localize sounds. However, how their ears perform these functions is not fully understood. Steady streaming, or time-independent, flows near a 350% scale model Atlantic cod otolith immersed in a viscous fluid were studied to determine if these fluid flows contain acoustically relevant information that could be detected by the ear s sensory hair cells. The otolith was oscillated sinusoidally at various orientations at frequencies of 8 24 Hz, corresponding to an actual frequency range of 280 830 Hz. Phaselocked particle pathline visualizations of the resulting flows give velocity, vorticity, and rate of strain fields over a single plane of this mainly two-dimensional flow. Although the streaming flows contain acoustically relevant information, the displacements due to these flows are likely too small to explain Atlantic cod hearing abilities near threshold. The results, however, may suggest a possible mechanism for detection of ultrasound in some fish species.

  9. Horizontal transmission of nervous necrosis virus between turbot Scophthalmus maximus and Atlantic cod Gadus morhua using cohabitation challenge.

    Science.gov (United States)

    Korsnes, Kjetil; Karlsbakk, Egil; Nylund, Are; Nerland, Audun Helge

    2012-05-15

    Experimental horizontal transmission of nervous necrosis virus (NNV) originating from halibut Hippoglossus hippoglossus was studied through cohabitation of intraperitoneally (i.p.) injected fish with uninfected fish for 125 d. The experimental groups consisted of i.p. injected turbot Scophthalmus maximus or i.p. injected Atlantic salmon Salmo salar with turbot, salmon or Atlantic cod Gadus morhua cohabitants. The initial weights were cod 10 g, salmon 40 g and turbot 3 g. NNV was detected in brain, eye and spleen by real-time reverse transcriptase PCR (qRT-PCR) in cod cohabitated with i.p. injected turbot after 90 and 125 d, suggesting NNV infection was transmitted horizontally from the turbot to cod. NNV was not detected in salmon that were cohabitated with i.p. challenged turbot or salmon. This study shows that NNV strains belonging to the Barfin Flounder Nervous Necrosis Virus (BFNNV) clade may be transmitted from halibut to cod via water. Hence there is a potential risk of horizontal transmission of the virus from farmed halibut to farmed and wild cod. The lack of detection of NNV in cohabitant salmon suggests that this fish species is less susceptible than cod, or not susceptible, to horizontal NNV transmission. This result might be influenced by the size of salmon, viral load in i.p. injected cohabitants or insufficient duration of the experiment.

  10. Amino acid sequence of the cold-active alkaline phosphatase from Atlantic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Asgeirsson, Bjarni; Nielsen, Berit Noesgaard; Højrup, Peter

    2003-01-01

    Atlantic cod is a marine fish that lives at low temperatures of 0-10 degrees C and contains a cold-adapted alkaline phosphatase (AP). Preparations of AP from either the lower part of the intestines or the pyloric caeca area were subjected to proteolytic digestion, mass spectrometry and amino acid...... has the same variable residues as mammalian APs (His153 and His328 by E. coli AP numbering). General comparison of the amino acid composition with mammalian APs showed that cod AP contains fewer Cys, Leu, Met and Ser, but proportionally more Asn, Asp, Ile, Lys, Trp and Tyr residues. Three N......-linked glycosylation sites were found. The glycan structure was determined as complex biantennary in type with fucose and sialic acid attached, although a trace of complex tri-antennary structure was also observed. A three-dimensional model was obtained by homology modelling using the human placental AP scaffold. Cod...

  11. Excess post hypoxic oxygen consumption in Atlantic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Plambech, M.; Deurs, Mikael van; Steffensen, J.F.;

    2013-01-01

    Atlantic cod Gadus morhua experienced oxygen deficit (DO2 ) when exposed to oxygen levels below their critical level (c. 73% of pcrit) and subsequent excess post-hypoxic oxygen consumption (CEPHO) upon return to normoxic conditions, indicative of an oxygen debt. The mean±s.e. CEPHO:DO2 was 6·9±1·......·9±1·5, suggesting that resorting to anaerobic energy production in severe hypoxia is energetically expensive...

  12. Excess post hypoxic oxygen consumption in Atlantic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Plambech, M.; Deurs, Mikael van; Steffensen, J.F.

    2013-01-01

    Atlantic cod Gadus morhua experienced oxygen deficit (DO2 ) when exposed to oxygen levels below their critical level (c. 73% of pcrit) and subsequent excess post-hypoxic oxygen consumption (CEPHO) upon return to normoxic conditions, indicative of an oxygen debt. The mean±s.e. CEPHO:DO2 was 6......·9±1·5, suggesting that resorting to anaerobic energy production in severe hypoxia is energetically expensive...

  13. DEVELOPMENT OF TECHNOLOGY FOR FISH CANNED PATE'S COD-FISH SPECIES

    OpenAIRE

    A. A. Efremova; L. K. Kuranova; O. A. Nikolaenko

    2014-01-01

    Summary. Fish and seafood play an important role in a balanced diet. The most reliable method of preservation is the production of canned fish. Cod fishery considered traditional objects of the North Basin, which catches in recent years stored at a consistently high level. They are represented, mainly cod, haddock, pollack, whiting. Lately there has been a tendency to increase yield loaves (polar bib). The aim of this work - the development of technology - canned pate's cod fish species with ...

  14. Residency, site fidelity and habitat use of Atlantic cod (Gadus morhua) at an offshore wind farm using acoustic telemetry.

    Science.gov (United States)

    Reubens, Jan T; Pasotti, Francesca; Degraer, Steven; Vincx, Magda

    2013-09-01

    Because offshore wind energy development is fast growing in Europe it is important to investigate the changes in the marine environment and how these may influence local biodiversity and ecosystem functioning. One of the species affected by these ecosystem changes is Atlantic cod (Gadus morhua), a heavily exploited, commercially important fish species. In this research we investigated the residency, site fidelity and habitat use of Atlantic cod on a temporal scale at windmill artificial reefs in the Belgian part of the North Sea. Acoustic telemetry was used and the Vemco VR2W position system was deployed to quantify the movement behaviour. In total, 22 Atlantic cod were tagged and monitored for up to one year. Many fish were present near the artificial reefs during summer and autumn, and demonstrated strong residency and high individual detection rates. When present within the study area, Atlantic cod also showed distinct habitat selectivity. We identified aggregation near the artificial hard substrates of the wind turbines. In addition, a clear seasonal pattern in presence was observed. The high number of fish present in summer and autumn alternated with a period of very low densities during the winter period.

  15. Ubiquitous presence of piscidin-1 in Atlantic cod as evidenced by immunolocalisation

    Directory of Open Access Journals (Sweden)

    Ruangsri Jareeporn

    2012-07-01

    Full Text Available Abstract Background Antimicrobial peptides (AMPs, the natural antibiotics bestowed upon all forms of life, consist of small molecular weight proteins with a broad spectrum antimicrobial activity against a variety of pathogenic microorganisms. Piscidins are one of the AMP families that are imperative for the innate defence mechanisms of teleosts. Atlantic cod, a basal fish belonging to the superorder Paracanthopterygii also possesses multiple piscidin peptides. Two piscidin paralogues (pis1 and pis2 and a novel alternative splice variant of pis2 of this fish were previously described by us. To shed light on other potent roles of these molecules, now we have mapped the distribution of piscidin 1 (Pis1, in different tissues and organs of cod through immunohistochemistry (IHC employing an affinity purified polyclonal antibody specific to Pis1. Results Various cell types and tissues of Atlantic cod including those from the immune organs of naïve fish are armed with Pis1 peptide. Different types of the blood leucocytes and phagocytic cells among the leucocytes examined gave a relatively strong indication of Pis1 immunopositivity. In addition, other cell types such as hematopoietic cells, epithelial cells and multi-granular cells located in the mucosal and hematopoietic tissues were also Pis1-immunoreactive. More interestingly, chondrocytes appear to produce Pis1 and this is the first report on the presence of an AMP in cartilage tissue of fish. Furthermore, Pis1 immunopositivity was detected in other tissues and organs of naïve fish including neural tissues, exocrine and endocrine glands, compound gland cells, excretory kidney, intestinal and respiratory epithelial cells, swim bladder, skin and hypodermis layer, myosepta, liver, heart, eye and oocytes. Conclusions Pis1 peptide is produced by various cell types located in different tissues and organs of Atlantic cod. It is present in all immune-related organs of naïve fish and the elevated peptide

  16. Diet affects the redox system in developing Atlantic cod (Gadus morhua larvae

    Directory of Open Access Journals (Sweden)

    Samuel Penglase

    2015-08-01

    Full Text Available The growth and development of marine fish larvae fed copepods is superior to those fed rotifers, but the underlying molecular reasons for this are unclear. In the following study we compared the effects of such diets on redox regulation pathways during development of Atlantic cod (Gadus morhua larvae. Cod larvae were fed a control diet of copepods or the typical rotifer/Artemia diet commonly used in commercial marine fish hatcheries, from first feeding until after metamorphosis. The oxidised and reduced glutathione levels, the redox potential, and the mRNA expression of 100 genes in redox system pathways were then compared between treatments during larval development. We found that rotifer/Artemia-fed cod larvae had lower levels of oxidised glutathione, a more reduced redox potential, and altered expression of approximately half of the redox system genes when compared to copepod-fed larvae. This rotifer/Artemia diet-induced differential regulation of the redox system was greatest during periods of suboptimal growth. Upregulation of the oxidative stress response transcription factor, nrf2, and NRF2 target genes in rotifer/Artemia fed larvae suggest this diet induced an NRF2-mediated oxidative stress response. Overall, the data demonstrate that nutritional intake plays a role in regulating the redox system in developing fish larvae. This may be a factor in dietary-induced differences observed in larval growth.

  17. Harvest selection on Atlantic cod behavioral traits: implications for spatial management.

    Science.gov (United States)

    Olsen, Esben Moland; Heupel, Michelle R; Simpfendorfer, Colin A; Moland, Even

    2012-07-01

    Harvesting wild populations may contrast or reinforce natural agents of selection and potentially cause evolutionary changes in life-history traits such as growth and maturation. Harvest selection may also act on behavioral traits, although this field of research has so far received less attention. We used acoustic tags and a network of receivers to monitor the behavior and fate of individual Atlantic cod (Gadus morhua, N = 60) in their natural habitat on the Norwegian Skagerrak coast. Fish with a strong diel vertical migration, alternating between shallow- and deep-water habitats, had a higher risk of being captured in the fishery (traps, gillnet, hand line) as compared to fish that stayed in deeper water. There was also a significant negative correlation between fish size (30-66 cm) and the magnitude of diel vertical migration. Natural selection on behavior was less clear, but tended to favor fish with a large activity space. On a monthly time scale we found significant repeatabilities for cod behavior, meaning that individual characteristics tended to persist and therefore may be termed personality traits. We argue that an evolutionary approach to fisheries management should consider fish behavior. This would be of particular relevance for spatial management actions such as marine reserve design.

  18. Honey, I cooled the cods: Modelling the effect of temperature on the structure of Boreal/Arctic fish ecosystems

    NARCIS (Netherlands)

    Pope, J.G.; Falk-Pedersen, J.; Jennings, S.; Rice, J.C.; Gislason, H.; Daan, N.

    2009-01-01

    Historically colder regions of the North Atlantic had fisheries dominated by only a few fish species; principally cod and capelin. Possible population dynamic mechanisms that lead to such dominance are investigated by considering how a charmingly simple published multispecies model of the North Sea

  19. Feasibility of Ocean Acoustic Waveguide Remote Sensing (OAWRS of Atlantic Cod with Seafloor Scattering Limitations

    Directory of Open Access Journals (Sweden)

    Ankita D. Jain

    2013-12-01

    Full Text Available Recently reported declines in the population of Atlantic cod have led to calls for additional survey methods for stock assessments. In combination with conventional line-transect methods that may have ambiguities in sampling fish populations, Ocean Acoustic Waveguide Remote Sensing (OAWRS has been shown to have a potential for providing accurate stock assessments (Makris N.C., et al. Science 2009, 323, 1,734–1,737; 54th Northeast Regional Stock Assessment Workshop (54th SAW US Department of Commerce, Northeast Fisheries Science Center, 2012. The use of OAWRS technology enables instantaneous wide-area sensing of fish aggregations over thousands of square kilometers. The ratio of the intensity of scattered returns from fish versus the seafloor in any resolution cell typically determines the maximum fish detection range of OAWRS, which then is a function of fish population density, scattering amplitude and depth distribution, as well as the level of seafloor scattering. With the knowledge of oceanographic parameters, such as bathymetry, sound speed structure and attenuation, we find that a Rayleigh–Born volume scattering approach can be used to efficiently and accurately estimate seafloor scattering over wide areas. From hundreds of OAWRS measurements of seafloor scattering, we determine the Rayleigh–Born scattering amplitude of the seafloor, which we find has a ƒ2,4 frequency dependence below roughly 2 kHz in typical continental shelf environments along the US northeast coast. We then find that it is possible to robustly detect cod aggregations across frequencies at and near swim bladder resonance for observed spawningconfigurations along the U.S. northeast coast, roughly the two octave range 150–600 Hzfor water depths up to roughly 100 m. This frequency range is also optimal for long-rangeocean acoustic waveguide propagation, because it enables multimodal acoustic waveguidepropagation with minimal acoustic absorption and forward

  20. The hypoxia avoidance behaviour of juvenile Atlantic cod (Gadus morhua L.) depends on the provision and pressure level of an O2 refuge

    DEFF Research Database (Denmark)

    Herbert, Neill A.; Skjaeraasen, Jon E.; Nilsen, Trygve

    2011-01-01

    The frequency of low O(2) (hypoxia) has increased in coastal marine areas but how fish avoid deleterious water masses is not yet clear. To assess whether the presence and oxygen pressure (PO(2)) level of an O(2) refuge affects the hypoxia avoidance behaviour of fish, individual Atlantic cod (Gadus...

  1. Effect of produced water on feeding and metabolism of Atlantic cod (Gadus morhua)

    Energy Technology Data Exchange (ETDEWEB)

    Volkoff, H.; Parrish, C. [Memorial Univ. of Newfoundland, St. John' s, NL (Canada); Hamoutene, D.; Mabrouk, G.; Samuelson, S.; Mansour, A.; Lee, K. [Fisheries and Oceans Canada, Dartmouth, NS (Canada). Maritimes Region, Ocean Sciences Division

    2007-07-01

    This paper addressed concerns regarding potentially detrimental cumulative effects of waste products from oil industry activities on marine organisms around production sites. The metabolic capacities, feeding and digestive physiology of fish have been shown to change with environmental parameters, which could impact the growth and health status of fish populations. In this study, the effects of produced water (PW) on feeding and metabolism of Atlantic cod was investigated by exposing fish to 0.100 ppm (x 10,000 PW dilution) or 200 ppm (x 500 dilution) of PW for 76 days. Throughout the experiment, food intake and mean weight were monitored. In addition, serum lipids, metabolites and gene expression of a brain appetite regulating factor were measured at the end of the experiment. No significant differences were observed in weight gain or food intake between the 3 groups of fish. Serum metabolites and neuropeptide Y expression remained unchanged between groups. The study is ongoing to complete comparative measurements of whole blood fatty acid profiles in plasma. The preliminary results indicate that feeding and metabolism in cod is not affected by produced water.

  2. Forecasting future recruitment success for Atlantic cod in the warming and acidifying Barents Sea.

    Science.gov (United States)

    Koenigstein, Stefan; Dahlke, Flemming T; Stiasny, Martina H; Storch, Daniela; Clemmesen, Catriona; Pörtner, Hans-Otto

    2017-07-29

    Productivity of marine fish stocks is known to be affected by environmental and ecological drivers, and global climate change is anticipated to alter recruitment success of many stocks. While the direct effects of environmental drivers on fish early life stage survival can be quantified experimentally, indirect effects in marine ecosystems and the role of adaptation are still highly uncertain. We developed an integrative model for the effects of ocean warming and acidification on the early life stages of Atlantic cod in the Barents Sea, termed SCREI (Simulator of Cod Recruitment under Environmental Influences). Experimental results on temperature and CO2 effects on egg fertilization, egg and larval survival and development times are incorporated. Calibration using empirical time series of egg production, temperature, food and predator abundance reproduces age-0 recruitment over three decades. We project trajectories of recruitment success under different scenarios and quantify confidence limits based on variation in experiments. A publicly accessible web version of the SCREI model can be run under www.oceanchange.uni-bremen.de/;SCREI. Severe reductions in average age-0 recruitment success of Barents Sea cod are projected under uncompensated warming and acidification toward the middle to end of this century. Although high population stochasticity was found, considerable rates of evolutionary adaptation to acidification and shifts in organismal thermal windows would be needed to buffer impacts on recruitment. While increases in food availability may mitigate short-term impacts, an increase in egg production achieved by stock management could provide more long-term safety for cod recruitment success. The SCREI model provides a novel integration of multiple driver effects in different life stages and enables an estimation of uncertainty associated with interindividual and ecological variation. The model thus helps to advance toward an improved empirical foundation for

  3. Effects of hypoxic exposure during feeding on SDA and postprandial cardiovascular physiology in the Atlantic cod, Gadus morhua

    DEFF Research Database (Denmark)

    Behrens, Jane; Axelsson, Michael; Neuenfeldt, Stefan;

    2012-01-01

    Some Atlantic cod in the Bornholm Basin undertake vertical foraging migrations into severely hypoxic bottom water. Hypoxic conditions can reduce the postprandial increase in gastrointestinal blood flow (GBF). This could subsequently postpone or reduce the postprandial increase in oxygen consumption...... on fed G. morhua in order to understand how the cardio-respiratory system of feeding fish respond to a period of hypoxia and a subsequent return to normoxia. These were exposed to 35% water oxygen saturation for 90 minutes, equivalent to the time and oxygen level cod voluntarily endure when searching...... course of the measured variables are similar to values obtained from fish not exposed to the hypoxic period. In conclusion, when cod in the field search for and ingest prey under moderate hypoxic conditions they appear to stay within safe limits of oxygen availability as we saw no indications...

  4. Atlantic Cod (Gadus morhua benefits from the availability of seagrass (Zostera marina nursery habitat

    Directory of Open Access Journals (Sweden)

    Richard J. Lilley

    2014-12-01

    Full Text Available The Atlantic cod (Gadus morhua is a species of significant economic and historic importance but infamous for its decline. Apart from overfishing, the causes of this decline and its subsequent lack of recovery remain largely unresolved. Indeed, the degree to which specific habitats are important for this species remains unquantified at the scale of North Atlantic. Here, the literature on the role of eelgrass meadows (Zostera marina as valuable nursery habitat for the Atlantic cod is reviewed and synthesized. Evidence is presented on relative densities of Atlantic cod in shallow water environments and in eelgrass meadows in comparison to alternative habitats. In addition, evidence pertaining to the ’viability gains’ attributed to the use of eelgrass meadows as nursery habitat (growth and survival by juvenile Atlantic cod is analyzed. Although juvenile Atlantic cod use of Z. marina is found to be facultative, when possible, available literatures indicates that they may select Z. marina as a nursery habitat where they are found in high density (average of at least 246 ha−1. From their use of Z. marina habitat the juvenile Atlantic cod receives viability benefits from it, improving their chances of reaching maturation. This paper provides strong evidence that eelgrass meadows are of significant importance to contributing to Atlantic cod stocks.

  5. A genomic island linked to ecotype divergence in Atlantic cod

    DEFF Research Database (Denmark)

    Hansen, Jakob Hemmer; Eg Nielsen, Einar; Therkildsen, Nina O.;

    2013-01-01

    gene flow and large effective population sizes, properties which theoretically could restrict divergence in local genomic regions. We identify a genomic region of strong population differentiation, extending over approximately 20 cM, between pairs of migratory and stationary ecotypes examined at two......The genomic architecture underlying ecological divergence and ecological speciation with gene flow is still largely unknown for most organisms. One central question is whether divergence is genome‐wide or localized in ‘genomic mosaics’ during early stages when gene flow is still pronounced....... Empirical work has so far been limited, and the relative impacts of gene flow and natural selection on genomic patterns have not been fully explored. Here, we use ecotypes of Atlantic cod to investigate genomic patterns of diversity and population differentiation in a natural system characterized by high...

  6. An investigation of appetite-related peptide transcript expression in Atlantic cod (Gadus morhua) brain following a Camelina sativa meal-supplemented feeding trial.

    Science.gov (United States)

    Tuziak, Sarah M; Rise, Matthew L; Volkoff, Hélène

    2014-10-25

    Camelina sativa is a hardy oilseed crop with seeds that contain high levels of ω3 polyunsaturated fatty acids and protein, which are critical components of fish feed. Camelina might thus be used as a cheaper and more sustainable supplement to fish-based products in aquaculture. Atlantic cod, Gadus morhua, is a species of interest in the aquaculture industry due to a decrease in wild populations and subsequent collapse of some cod fisheries. As cod are carnivorous fish, it is necessary to determine how this species physiologically tolerates plant-based diets. In this study, juvenile Atlantic cod were subjected to 13 weeks of either 15 or 30% camelina meal (CM)-supplemented diets or a control fish meal feed. Growth and food intake were evaluated and the mRNA expression of appetite-related hormones [pro-melanin-concentrating hormone (pmch), hypocretin (synonym: orexin, hcrt), neuropeptide Y (npy) and cocaine- and amphetamine-regulated transcript (cart)] was assessed using quantitative real-time PCR in brain regions related to food intake regulation (telencephalon/preoptic area, optic tectum/thalamus and hypothalamus). CM inclusion diets caused decreases in both growth and food intake in Atlantic cod. Optic tectum pmch transcript expression was significantly higher in fish fed the 30% CM diet compared to fish fed the 15% CM diet. In the hypothalamus, compared to fish fed the control diet, hcrt expression was significantly higher in fish fed the 30% CM diet, while npy transcript expression was significantly higher in fish fed the 15% CM diet. cart mRNA expression was not affected by diet in any brain region. Further studies are needed to determine which factors (e.g. anti-nutritional factors, palatability and nutritional deficits) contribute to reduced feed intake and growth, as well as the maximum CM inclusion level that does not negatively influence feed intake, growth rate and the transcript expression of appetite-related factors in Atlantic cod.

  7. The effect of carbon dioxide on growth of juvenile Atlantic cod Gadus morhua L

    DEFF Research Database (Denmark)

    Moran, Damian; Støttrup, Josianne

    2011-01-01

    L−1 CO2, 2.8 mm Hg, 3800 μatm) and high CO2 exposure (18 ± 0.2 mg L−1 CO2, 6.3 mm Hg, 8500 μatm). All water quality parameters were within the range of what might normally be considered acceptable for good growth, including the CO2 levels tested. Weight gain, growth rate and condition factor were...... amongst treatments, indicating that there was no differential size mortality due the effects of hypercapnia, and the CO2 levels tested were within the adaptive capacity of the fish. In addition, an analysis was carried out of the test CO2 concentrations reported in three other long-term hypercapnia...... experiments using marine fish species. The test concentrations were recalculated from the reported carbonate chemistry conditions, and indicated that the CO2 concentration effect threshold may have been overestimated in two of these studies. Our study suggests that juvenile Atlantic cod are more susceptible...

  8. Cloning and characterization of neuropeptide Y (NPY) and cocaine and amphetamine regulated transcript (CART) in Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Kehoe, Amy S; Volkoff, Hélène

    2007-03-01

    Neuropeptide Y (NPY) and cocaine and amphetamine regulated transcript (CART) are two neuropeptides involved in the regulation of feeding in both mammals and fish. NPY stimulates feeding whereas CART inhibits feeding. In this study, we have cloned the full-length cDNA and complete genomic DNA sequences for NPY and CART in Atlantic cod. Atlantic cod preproNPY share a 45-85% identity with preproNPY from other fish whereas preproCART shows a 70% identity to CART peptides from zebrafish and goldfish. RT-PCR revealed that NPY mRNA is expressed in brain, in particular the forebrain, and in peripheral tissues, including intestine and kidney. CART mRNA is expressed throughout the brain and in ovaries. In order to assess the role of these peptides in the regulation of feeding, we examined changes in mRNA expression in the forebrain before, during and after a meal. NPY and CART mRNA both undergo peri-prandial changes in expression, with NPY levels being elevated around meal time and CART showing a decline 2 h after a meal. Food deprivation for 7 days induced a decrease in CART mRNA expression in the brain but did not affect NPY mRNA expression. Overall, our results suggest that NPY and CART are conserved peptides that might be involved in the regulation of feeding and other physiological functions in Atlantic cod.

  9. Effects of chronic produced water exposure on the expression of some immune-related genes of juvenile Atlantic cod

    Energy Technology Data Exchange (ETDEWEB)

    Perez Casanova, J.; Hamoutene, D.; Samuelson, S.; Burt, K.; King, T. [Fisheries and Oceans Canada, St. John' s, NL (Canada); Lee, K. [Fisheries and Oceans Canada, Dartmouth, NS (Canada)

    2010-07-01

    This study assessed the impacts of exposure to processed water produced by offshore oil operators on immune-related genes of juvenile Atlantic cod exposed to processed water for a period of 22 weeks. The study investigated the influence of processed water concentrations on growth parameters; food consumption; plasma cortisol; respiratory burst activity (RB); and mRNA expression. The study showed that the RB of circulating leukocytes was significantly elevated. Significant up-regulation of the mRNA expression of microglobulin, immunoglobulin light chain, and interleukins was observed in some fish. The down-regulation of the interferon stimulated gene was also observed. The study indicated that chronic exposure to significant amounts of processed water causes modulations of the immune system of juvenile Atlantic cod.

  10. Evaluation of Electrical Stunning of Atlantic Cod (Gadus morhua) and Turbot (Psetta maxima) in Seawater

    NARCIS (Netherlands)

    Lambooij, E.; Digre, H.; Erikson, U.; Reimert, H.G.M.; Burggraaf, D.; Vis, van de J.W.

    2013-01-01

    The aim of this study was to assess electrical stunning of Atlantic cod and turbot in seawater to develop a protocol for the process of stunning and killing. An induced general epileptiform insult (unconscious) had a duration of 40 ± 27 s (n =14) in cod (2.6 ± 0.5 kg) and 34 ± 18 s (n = 19) in turbo

  11. Experimental Challenge of Atlantic Cod (Gadus morhua) with a Brucella pinnipedialis Strain from Hooded Seal (Cystophora cristata)

    Science.gov (United States)

    Nymo, Ingebjørg Helena; Seppola, Marit; Al Dahouk, Sascha; Bakkemo, Kathrine Ryvold; Jiménez de Bagüés, María Pilar; Godfroid, Jacques; Larsen, Anett Kristin

    2016-01-01

    Pathology has not been observed in true seals infected with Brucella pinnipedialis. A lack of intracellular survival and multiplication of B. pinnipedialis in hooded seal (Cystophora cristata) macrophages in vitro indicates a lack of chronic infection in hooded seals. Both epidemiology and bacteriological patterns in the hooded seal point to a transient infection of environmental origin, possibly through the food chain. To analyse the potential role of fish in the transmission of B. pinnipedialis, Atlantic cod (Gadus morhua) were injected intraperitoneally with 7.5 x 107 bacteria of a hooded seal field isolate. Samples of blood, liver, spleen, muscle, heart, head kidney, female gonads and feces were collected on days 1, 7, 14 and 28 post infection to assess the bacterial load, and to determine the expression of immune genes and the specific antibody response. Challenged fish showed an extended period of bacteremia through day 14 and viable bacteria were observed in all organs sampled, except muscle, until day 28. Neither gross lesions nor mortality were recorded. Anti-Brucella antibodies were detected from day 14 onwards and the expression of hepcidin, cathelicidin, interleukin (IL)-1β, IL-10, and interferon (IFN)-γ genes were significantly increased in spleen at day 1 and 28. Primary mononuclear cells isolated from head kidneys of Atlantic cod were exposed to B. pinnipedialis reference (NCTC 12890) and hooded seal (17a-1) strain. Both bacterial strains invaded mononuclear cells and survived intracellularly without any major reduction in bacterial counts for at least 48 hours. Our study shows that the B. pinnipedialis strain isolated from hooded seal survives in Atlantic cod, and suggests that Atlantic cod could play a role in the transmission of B. pinnipedialis to hooded seals in the wild. PMID:27415626

  12. In vitro pH-Stat protein hydrolysis of feed ingredients for Atlantic cod, Gadus morhua. 1. Development of the method

    NARCIS (Netherlands)

    Tibbetts, S.; Milley, J.E.; Ross, N.W.; Verreth, J.A.J.; Lall, S.P.

    2011-01-01

    The method described here involves the extraction and partial purification of an enzyme fraction from the dissected pyloric caeca of commercially farmed Atlantic cod, Gadus morhua (1 kg fish) and the development of a pH-Stat method to predict protein digestibility. The various extraction and partial

  13. Recent trends in the abundance of plaice Pleuronectes platessa and cod Gadus morhua in shallow coastal waters of the Northeastern Atlantic continental shelf – a review

    DEFF Research Database (Denmark)

    Dutz, Jörg; Støttrup, Josianne Gatt; Stenberg, Claus

    2016-01-01

    Shallow, near-shore water habitats on the continental shelf of the Northeast Atlantic have been productive fishing areas in the past. Here, we review the present knowledge about (i) recent trends in the abundance of plaice and cod in these habitats and (ii) hypotheses regarding the factors respon...

  14. Climate warming causes life-history evolution in a model for Atlantic cod (Gadus morhua)

    Science.gov (United States)

    Holt, Rebecca E.; Jørgensen, Christian

    2014-01-01

    Climate change influences the marine environment, with ocean warming being the foremost driving factor governing changes in the physiology and ecology of fish. At the individual level, increasing temperature influences bioenergetics and numerous physiological and life-history processes, which have consequences for the population level and beyond. We provide a state-dependent energy allocation model that predicts temperature-induced adaptations for life histories and behaviour for the North-East Arctic stock (NEA) of Atlantic cod (Gadus morhua) in response to climate warming. The key constraint is temperature-dependent respiratory physiology, and the model includes a number of trade-offs that reflect key physiological and ecological processes. Dynamic programming is used to find an evolutionarily optimal strategy of foraging and energy allocation that maximizes expected lifetime reproductive output given constraints from physiology and ecology. The optimal strategy is then simulated in a population, where survival, foraging behaviour, growth, maturation and reproduction emerge. Using current forcing, the model reproduces patterns of growth, size-at-age, maturation, gonad production and natural mortality for NEA cod. The predicted climate responses are positive for this stock; under a 2°C warming, the model predicted increased growth rates and a larger asymptotic size. Maturation age was unaffected, but gonad weight was predicted to more than double. Predictions for a wider range of temperatures, from 2 to 7°C, show that temperature responses were gradual; fish were predicted to grow faster and increase reproductive investment at higher temperatures. An emergent pattern of higher risk acceptance and increased foraging behaviour was also predicted. Our results provide important insight into the effects of climate warming on NEA cod by revealing the underlying mechanisms and drivers of change. We show how temperature-induced adaptations of behaviour and several life

  15. Will you swim into my parlour? In situ observations of Atlantic cod (Gadus morhua) interactions with baited pots, with implications for gear design

    Science.gov (United States)

    Walsh, Philip; Favaro, Brett

    2017-01-01

    Pots (also known as traps) are baited fishing gears widely used in commercial fisheries, and are being considered as a tool for harvesting Atlantic cod (Gadus morhua) in Newfoundland and Labrador, Canada. Pots produce lower environmental impacts than many other fishing gears, but they will only be a viable fishing strategy if they are efficient and selective at catching their target species. To study the behaviour of cod in and around pots, and how those behaviours affect pot efficiency, we used long-duration underwater video cameras to assess two models of cod pot deployed in the nearshore waters of Fogo Island, NL. We examined the number of cod that approached the pot, the number and proportion that successfully completed entries into the pot openings, and the number that exited, and related these factors to the direction of water movement. We observed very few entry attempts relative to the number of approaches by cod, and only 22% of all entry attempts were successful. We observed that 50% of approaches, 70% of entry attempts, and 73% of successful entrances occurred against the current, and 25% of cod were able to exit the pot following capture. Based on our observations, we suggest that future cod pots should have a greater number of entrances, or a mechanism to ensure that entrances rotate in line with the current, in order to maximize their catch efficiency for cod.

  16. Severe tissue damage in Atlantic cod larvae under increasing ocean acidification

    Science.gov (United States)

    Frommel, Andrea Y.; Maneja, Rommel; Lowe, David; Malzahn, Arne M.; Geffen, Audrey J.; Folkvord, Arild; Piatkowski, Uwe; Reusch, Thorsten B. H.; Clemmesen, Catriona

    2012-01-01

    Ocean acidification, caused by increasing atmospheric concentrations of CO2 (refs , , ), is one of the most critical anthropogenicthreats to marine life. Changes in seawater carbonate chemistry have the potential to disturb calcification, acid-base regulation, blood circulation and respiration, as well as the nervous system of marine organisms, leading to long-term effects such as reduced growth rates and reproduction. In teleost fishes, early life-history stages are particularly vulnerable as they lack specialized internal pH regulatory mechanisms. So far, impacts of relevant CO2 concentrations on larval fish have been found in behaviour and otolith size, mainly in tropical, non-commercial species. Here we show detrimental effects of ocean acidification on the development of a mass-spawning fish species of high commercial importance. We reared Atlantic cod larvae at three levels of CO2, (1) present day, (2) end of next century and (3) an extreme, coastal upwelling scenario, in a long-term ( months) mesocosm experiment. Exposure to CO2 resulted in severe to lethal tissue damage in many internal organs, with the degree of damage increasing with CO2 concentration. As larval survival is the bottleneck to recruitment, ocean acidification has the potential to act as an additional source of natural mortality, affecting populations of already exploited fish stocks.

  17. Transferrin gene polymorphisms and population genetic studies of Atlantic cod (Gadus morhua)

    Institute of Scientific and Technical Information of China (English)

    Berhan Asmamaw

    2016-01-01

    Objective:To detect single nucleotide polymorphisms (SNPs) in the cod transferrin gene by comparing the sequences from Norwegian (North East Atlantic Ocean) and Canadian (North West Atlantic Ocean) specimen, and to quantify the genetic variation and differentiation in East and West Atlantic cod populations. Methods:cDNA sequences between individuals of Canadian (North West Atlantic Ocean) and Norwegian (North East Atlantic Ocean) origin were aligned. Allele frequencies of theSNPs were used to discriminate the different Atlantic cod populations in West/East Atlantic Ocean, and the Baltic Sea. Results: The sequence alignment detected19SNPs, of which 18 of them resulted in amino acid changes in the transferrin protein. Nonsynonymous to synonymous site substitution ratio (dn/ds) was by far greater than 1 providing an evidence for the existence of positive selection. The West Atlantic cod populations showed high values of heterozygosity and the Baltic populations were found to be inbred. Conclusions: This study identified and indicated transferrin gene polymorphisms that can be used for population differentiations.

  18. Differences in salinity tolerance and gene expression between two populations of Atlantic cod (Gadus morhua) in response to salinity stress

    DEFF Research Database (Denmark)

    Larsen, Peter Foged; Eg Nielsen, Einar; Meier, Kristian

    2012-01-01

    in salinity tolerance and gene expression among Atlantic cod (Gadus morhua) from two populations distributed across a steep salinity gradient, we observed high mortality (45% North Sea cod and 80% Baltic Sea cod) in a reciprocal common garden setup. Quantitative RT-PCR assays for expression of hsp70 and Na....... The findings strongly suggest that Atlantic cod are adapted to local saline conditions, despite relatively low levels of neutral genetic divergence between populations...

  19. Gender differences in health and aging of Atlantic cod subject to size selective fishery

    Directory of Open Access Journals (Sweden)

    Bethanie Carney Almroth

    2012-07-01

    We have analyzed health and physiological aging parameters in male and female Atlantic cod, Gadus morhua, captured in Kattegat, Skagerrak and in Öresund. Gender differences were clearly evident in a number of variables. Males had longer liver telomeres and higher catalase activities than females, while females had higher superoxide dismutase activity, liver somatic index and condition factor. Effects of age were found for males where levels of the antioxidant glutathione and telomere length declined with age, indicating physiological aging. Liver somatic index increased and percentage oxidized glutathione decreased with age. Between-site comparisons of males show that percentage oxidized glutathione and catalase were lowest in Kattegat, whereas protein carbonyls and condition factor were higher in Skagerrak. Females, on the other hand, showed no differences between sites or indications of somatic aging or age-related effects in egg quality, indicating that older and larger female cod are healthy and show no changes in eggs with age. In contrast, males showed indications of physiological aging and lower condition than females. The results emphasize the importance of conserving old mature fish, in particular high egg-productive females, when managing fisheries.

  20. Zschokkella hildae Auerbach, 1910: phylogenetic position, morphology, and location in cultured Atlantic cod.

    Science.gov (United States)

    Holzer, Astrid Sibylle; Wootten, Rod; Sommerville, Christina

    2010-06-01

    The myxozoan Zschokkella hildae Auerbach, 1910, was detected with a prevalence of 100% in cultured Atlantic cod, Gadus morhua L. aged 1+ from a culture facility on the west coast of Scotland. Sporogonic stages of Z. hildae, plasmodia producing 2-5 mature spores, were located predominantly in the collecting ducts and ureters of the kidney, and spores were present in the urine collected from the bladder. Less frequently, plasmodia were detected in the interstitial tissue of the kidney. The parasite prevalence in cultured fish was considerably higher than reported in wild fish but no obvious signs of pathology were detected. SSU rDNA sequencing and phylogenetic analysis showed that Z. hildae is closely related to a Sinuolinea sp. from the urinary system of turbot, Psetta maxima (L.), and that these two species, together with other myxozoans from the urinary system of marine fish cluster together in a sub-clade of the recognised marine clade of myxozoans. This sub-clade is characterised by a specific linear expansion segment, helix E23_15 in the secondary structure of variable region V4 of the SSU rDNA. Z. hildae and Sinuolinea sp. show extraordinary large linear expansion segment in both V4 and V7 and an important number of complementary base changes in the conservative regions of the SSU rDNA, indicating considerable evolutionary changes in the SSU rDNA of these species when compared with other myxozoans from the marine environment.

  1. Aerobic scope for activity in age 0 year Atlantic cod Gadus morhua.

    Science.gov (United States)

    Hansen, S L; von Herbing, I Hunt

    2009-05-01

    Key components of swimming metabolism: standard metabolism (R(s)), active metabolism (R(a)) and absolute aerobic scope for activity (R(a)-R(s)) were determined for small age 0 year Atlantic cod Gadus morhua. Gadus morhua juveniles grew from 0.50 to 2.89 g wet body mass (M(WB)) over the experimental period of 100 days, and growth rates (G) ranged from 1.4 to 2.9% day(-1), which decreased with increasing size. Metabolic rates were recorded by measuring changes in oxygen consumption over time at different activity levels using modified Brett-type respirometers designed to accommodate the small size and short swimming endurance of small fishes. Power performance relationships were established between oxygen consumption and swimming speed measurements were repeated for individual fish as each fish grew. Mass-specific standard metabolic rates (RsMWB-1) were calculated from the power performance relationships by extrapolating to zero swimming speed and decreased from 7.00 to 5.77 micromol O(2) g(-1) h(-1), mass-specific active metabolic rates (RaMWB-1) were calculated from extrapolation to maximum swimming speed (U(max)) and decreased from 26.18 to 14.35 micromol O(2) g(-1) h(-1) and mass-specific absolute scope for activity was calculated as the difference between active and standard metabolism (RaMWB-1-RsMWB-1) and decreased from 26.18 to 14.35 micromol O(2) g(-1) h(-1) as M(WB) increased. Small fish with low R(s) had bigger aerobic scopes but, as expected, R(s) was higher in smaller fish than larger fish. The measurements and results from this study are unique as R(s), R(a) and absolute aerobic scopes have not been previously determined for small age 0 year G. morhua.

  2. Genotype by Environment Interaction for Growth in Atlantic Cod (Gadus morhua L. in Four Farms of Norway

    Directory of Open Access Journals (Sweden)

    Rama Bangera

    2015-06-01

    Full Text Available We studied genotype by environment interaction (G × E for body weight (BW of Atlantic cod (Gadus morhua L. from the National cod breeding program in Norway. Records of 13,811 fish in a nucleus farm (NUC and two test farms (PENorth, PESouth in year-class (YC 2007, and for 9149 fish in NUC and one test farm in YC 2010 were available. Heterogeneity of variances and heritabilities ( were estimated using a univariate animal model with environmental effects common to full-sibs (full-model. Genetic correlations ( between farms were estimated using a multivariate full-model and a reduced-model (without for each YC. Heterogeneity of  was observed in both YC 2007 (0.10 to 0.16 and YC 2010 (0.08 to 0.26. The estimates of  between NUC and test farms were relatively high for both models (0.81 ± 0.19 to 0.96 ± 0.17 and (0.81 ± 0.08 to 0.86 ± 0.04, suggesting low re-ranking of genotypes. Strong re-ranking of genotypes between PESouth and PENorth may be less important because most cod producers are situated close to the breeding nucleus. In conclusion, G × E between NUC and test farms were low and at present there is no need for separate breeding programs for BW in cod.

  3. DEVELOPMENT OF TECHNOLOGY FOR FISH CANNED PATE'S COD-FISH SPECIES

    Directory of Open Access Journals (Sweden)

    A. A. Efremova

    2014-01-01

    Full Text Available Summary. Fish and seafood play an important role in a balanced diet. The most reliable method of preservation is the production of canned fish. Cod fishery considered traditional objects of the North Basin, which catches in recent years stored at a consistently high level. They are represented, mainly cod, haddock, pollack, whiting. Lately there has been a tendency to increase yield loaves (polar bib. The aim of this work - the development of technology - canned pate's cod fish species with the addition of plant materials. We used the adopted research microbiological, chemical and physical methods. The weight proportion of water, lipids, protein, mineral raw determined according to State standard 7636-85. Developed a technology - canned pate's cod fish species with the addition of plant materials. Optimized formulation is set to sterilization. Experimentally determined parameters of quality canned and given comprehensive assessment nutritional value of new products, organoleptic, physico-chemical, biochemical and microbiological tests showed that canned pates of Gadidae species of fish with vegetables, meet all safety requirements and are characterized, along with excellent consumer properties, high nutritional value. Based on the results of the research complex developed technical documentation for production of canned vegetables, pates of Gadidae species.

  4. Industry Based Survey (IBS) Cod

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The "Gulf of Maine Atlantic Cod Industry-Based Survey" was a collaboration of the Massachusetts Division of Marine Fisheries and the fishing industry, with support...

  5. "Islands of Divergence" in the Atlantic Cod Genome Represent Polymorphic Chromosomal Rearrangements.

    Science.gov (United States)

    Sodeland, Marte; Jorde, Per Erik; Lien, Sigbjørn; Jentoft, Sissel; Berg, Paul R; Grove, Harald; Kent, Matthew P; Arnyasi, Mariann; Olsen, Esben Moland; Knutsen, Halvor

    2016-04-11

    In several species genetic differentiation across environmental gradients or between geographically separate populations has been reported to center at "genomic islands of divergence," resulting in heterogeneous differentiation patterns across genomes. Here, genomic regions of elevated divergence were observed on three chromosomes of the highly mobile fish Atlantic cod (Gadus morhua) within geographically fine-scaled coastal areas. The "genomic islands" extended at least 5, 9.5, and 13 megabases on linkage groups 2, 7, and 12, respectively, and coincided with large blocks of linkage disequilibrium. For each of these three chromosomes, pairs of segregating, highly divergent alleles were identified, with little or no gene exchange between them. These patterns of recombination and divergence mirror genomic signatures previously described for large polymorphic inversions, which have been shown to repress recombination across extensive chromosomal segments. The lack of genetic exchange permits divergence between noninverted and inverted chromosomes in spite of gene flow. For the rearrangements on linkage groups 2 and 12, allelic frequency shifts between coastal and oceanic environments suggest a role in ecological adaptation, in agreement with recently reported associations between molecular variation within these genomic regions and temperature, oxygen, and salinity levels. Elevated genetic differentiation in these genomic regions has previously been described on both sides of the Atlantic Ocean, and we therefore suggest that these polymorphisms are involved in adaptive divergence across the species distributional range. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

  6. Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection

    Directory of Open Access Journals (Sweden)

    Fjalestad Kjersti T

    2008-02-01

    Full Text Available Abstract Background The Atlantic cod (Gadus morhua is a groundfish of great economic value in fisheries and an emerging species in aquaculture. Genetic markers are needed to identify wild stocks in order to ensure sustainable management, and for marker-assisted selection and pedigree determination in aquaculture. Here, we report on the development and evaluation of a large number of Single Nucleotide Polymorphism (SNP markers from the alignment of Expressed Sequence Tag (EST sequences in Atlantic cod. We also present basic population parameters of the SNPs in samples of North-East Arctic cod and Norwegian coastal cod obtained from three different localities, and test for SNPs that may have been targeted by natural selection. Results A total of 17,056 EST sequences were used to find 724 putative SNPs, from which 318 segregating SNPs were isolated. The SNPs were tested on Atlantic cod from four different sites, comprising both North-East Arctic cod (NEAC and Norwegian coastal cod (NCC. The average heterozygosity of the SNPs was 0.25 and the average minor allele frequency was 0.18. FST values were highly variable, with the majority of SNPs displaying very little differentiation while others had FST values as high as 0.83. The FST values of 29 SNPs were found to be larger than expected under a strictly neutral model, suggesting that these loci are, or have been, influenced by natural selection. For the majority of these outlier SNPs, allele frequencies in a northern sample of NCC were intermediate between allele frequencies in a southern sample of NCC and a sample of NEAC, indicating a cline in allele frequencies similar to that found at the Pantophysin I locus. Conclusion The SNP markers presented here are powerful tools for future genetics work related to management and aquaculture. In particular, some SNPs exhibiting high levels of population divergence have potential to significantly enhance studies on the population structure of Atlantic cod.

  7. Elucidation of different cold-adapted Atlantic cod (Gadus morhua) trypsin X isoenzymes.

    Science.gov (United States)

    Stefansson, Bjarki; Sandholt, Gunnar B; Gudmundsdottir, Ágústa

    2017-01-01

    Trypsins from Atlantic cod (Gadus morhua), consisting of several isoenzymes, are highly active cold-adapted serine proteases. These trypsins are isolated for biomedical use in an eco-friendly manner from underutilized seafood by-products. Our group has explored the biochemical properties of trypsins and their high potential in biomedicine. For broader utilization of cod trypsins, further characterization of biochemical properties of the individual cod trypsin isoenzymes is of importance. For that purpose, a benzamidine purified trypsin isolate from Atlantic cod was analyzed. Anion exchange chromatography revealed eight peaks containing proteins around 24kDa with tryptic activity. Based on mass spectrometric analysis, one isoenzyme gave the best match to cod trypsin I and six isoenzymes gave the best match to cod trypsin X. Amino terminal sequencing of two of these six trypsin isoenzymes showed identity to cod trypsin X. Three sequence variants of trypsin X were identified by cDNA analysis demonstrating that various forms of this enzyme exist. One trypsin X isoenzyme was selected for further characterization based on abundance and stability. Stepwise increase in catalytic efficiency (kcat/Km) of this trypsin X isoenzyme was obtained with substrates containing one to three amino acid residues. The study demonstrates that the catalytic efficiency of this trypsin X isoenzyme is comparable to that of cod trypsin I, the most abundant and highly active isoenzyme in the benzamidine cod trypsin isolate. Differences in pH stability and sensitivity to inhibitors of the trypsin X isoenzyme compared to cod trypsin I were detected that may be important for practical use.

  8. Evidence from data storage tags for the presence of lunar and semilunar behavioral cycles in spawning Atlantic cod

    Science.gov (United States)

    Grabowski, Timothy B.; McAdam, Bruce J.; Thorsteinsson, Vilhjalmur; Marteinsdóttir, Gudrún

    2015-01-01

    Understanding the environmental processes determining the timing and success of reproduction is of critical importance to developing effective management strategies of marine fishes. Unfortunately it has proven difficult to comprehensively study the reproductive behavior of broadcast-spawning fishes. The use of electronic data storage tags (DSTs) has the potential to provide insights into the behavior of fishes. These tags allow for data collection over relatively large spatial and temporal scales that can be correlated to predicted environmental conditions and ultimately be used to refine predictions of year class strength. In this paper we present data retrieved from DSTs demonstrating that events putatively identified as Atlantic cod spawning behavior is tied to a lunar cycle with a pronounced semi-lunar cycle within it. Peak activity occurs around the full and new moon with no evidence of relationship with day/night cycles.

  9. Discrimination between weaned and unweaned Atlantic cod (Gadus morhua) in capture-based aquaculture (CBA) by X-ray imaging and radio-frequency metal detector.

    Science.gov (United States)

    Misimi, Ekrem; Martinsen, Svein; Mathiassen, John Reidar; Erikson, Ulf

    2014-01-01

    The aim of this study was to investigate the feasibility of two detection methods for use in discrimination and sorting of adult Atlantic cod (about 2 kg) in the small scale capture-based aquaculture (CBA). Presently, there is no established method for discrimination of weaned and unweaned cod in CBA. Generally, 60-70% of the wild-caught cod in the CBA are weaned into commercial dry feed. To increase profitability for the fish farmers, unweaned cod must be separated from the stock, meaning the fish must be sorted into two groups - unweaned and weaned from moist feed. The challenges with handling of large numbers of fish in cages, defined the limits of the applied technology. As a result, a working model was established, focusing on implementing different marking materials added to the fish feed, and different technology for detecting the feed presence in the fish gut. X-ray imaging in two modes (planar and dual energy band) and sensitive radio-frequency metal detection were the detection methods that were chosen for the investigations. Both methods were tested in laboratory conditions using dead fish with marked feed inserted into the gut cavity. In particular, the sensitive radio-frequency metal detection method with carbonyl powder showed very promising results in detection of marked feed. Results show also that Dual energy band X-ray imaging may have potential for prediction of fat content in the feed. Based on the investigations it can be concluded that both X-ray imaging and sensitive radio-frequency metal detector technology have the potential for detecting cod having consumed marked feed. These are all technologies that may be adapted to large scale handling of fish from fish cages. Thus, it may be possible to discriminate between unweaned and weaned cod in a large scale grading situation. Based on the results of this study, a suggestion for evaluation of concept for in-situ sorting system is presented.

  10. Discrimination between weaned and unweaned Atlantic cod (Gadus morhua in capture-based aquaculture (CBA by X-ray imaging and radio-frequency metal detector.

    Directory of Open Access Journals (Sweden)

    Ekrem Misimi

    Full Text Available The aim of this study was to investigate the feasibility of two detection methods for use in discrimination and sorting of adult Atlantic cod (about 2 kg in the small scale capture-based aquaculture (CBA. Presently, there is no established method for discrimination of weaned and unweaned cod in CBA. Generally, 60-70% of the wild-caught cod in the CBA are weaned into commercial dry feed. To increase profitability for the fish farmers, unweaned cod must be separated from the stock, meaning the fish must be sorted into two groups - unweaned and weaned from moist feed. The challenges with handling of large numbers of fish in cages, defined the limits of the applied technology. As a result, a working model was established, focusing on implementing different marking materials added to the fish feed, and different technology for detecting the feed presence in the fish gut. X-ray imaging in two modes (planar and dual energy band and sensitive radio-frequency metal detection were the detection methods that were chosen for the investigations. Both methods were tested in laboratory conditions using dead fish with marked feed inserted into the gut cavity. In particular, the sensitive radio-frequency metal detection method with carbonyl powder showed very promising results in detection of marked feed. Results show also that Dual energy band X-ray imaging may have potential for prediction of fat content in the feed. Based on the investigations it can be concluded that both X-ray imaging and sensitive radio-frequency metal detector technology have the potential for detecting cod having consumed marked feed. These are all technologies that may be adapted to large scale handling of fish from fish cages. Thus, it may be possible to discriminate between unweaned and weaned cod in a large scale grading situation. Based on the results of this study, a suggestion for evaluation of concept for in-situ sorting system is presented.

  11. Discrimination between Weaned and Unweaned Atlantic Cod (Gadus morhua) in Capture-Based Aquaculture (CBA) by X-Ray Imaging and Radio-Frequency Metal Detector

    Science.gov (United States)

    Misimi, Ekrem; Martinsen, Svein; Mathiassen, John Reidar; Erikson, Ulf

    2014-01-01

    The aim of this study was to investigate the feasibility of two detection methods for use in discrimination and sorting of adult Atlantic cod (about 2 kg) in the small scale capture-based aquaculture (CBA). Presently, there is no established method for discrimination of weaned and unweaned cod in CBA. Generally, 60–70% of the wild-caught cod in the CBA are weaned into commercial dry feed. To increase profitability for the fish farmers, unweaned cod must be separated from the stock, meaning the fish must be sorted into two groups – unweaned and weaned from moist feed. The challenges with handling of large numbers of fish in cages, defined the limits of the applied technology. As a result, a working model was established, focusing on implementing different marking materials added to the fish feed, and different technology for detecting the feed presence in the fish gut. X-ray imaging in two modes (planar and dual energy band) and sensitive radio-frequency metal detection were the detection methods that were chosen for the investigations. Both methods were tested in laboratory conditions using dead fish with marked feed inserted into the gut cavity. In particular, the sensitive radio-frequency metal detection method with carbonyl powder showed very promising results in detection of marked feed. Results show also that Dual energy band X-ray imaging may have potential for prediction of fat content in the feed. Based on the investigations it can be concluded that both X-ray imaging and sensitive radio-frequency metal detector technology have the potential for detecting cod having consumed marked feed. These are all technologies that may be adapted to large scale handling of fish from fish cages. Thus, it may be possible to discriminate between unweaned and weaned cod in a large scale grading situation. Based on the results of this study, a suggestion for evaluation of concept for in-situ sorting system is presented. PMID:24743448

  12. Historical DNA reveals the demographic history of Atlantic cod (Gadus morhua) in medieval and early modern Iceland.

    Science.gov (United States)

    Ólafsdóttir, Guðbjörg Ásta; Westfall, Kristen M; Edvardsson, Ragnar; Pálsson, Snæbjörn

    2014-02-22

    Atlantic cod (Gadus morhua) vertebrae from archaeological sites were used to study the history of the Icelandic Atlantic cod population in the time period of 1500-1990. Specifically, we used coalescence modelling to estimate population size and fluctuations from the sequence diversity at the cytochrome b (cytb) and Pantophysin I (PanI) loci. The models are consistent with an expanding population during the warm medieval period, large historical effective population size (NE), a marked bottleneck event at 1400-1500 and a decrease in NE in early modern times. The model results are corroborated by the reduction of haplotype and nucleotide variation over time and pairwise population distance as a significant portion of nucleotide variation partitioned across the 1550 time mark. The mean age of the historical fished stock is high in medieval times with a truncation in age in early modern times. The population size crash coincides with a period of known cooling in the North Atlantic, and we conclude that the collapse may be related to climate or climate-induced ecosystem change.

  13. Melanin-concentrating hormone (MCH) and gonadotropin-releasing hormones (GnRH) in Atlantic cod, Gadus morhua: tissue distributions, early ontogeny and effects of fasting.

    Science.gov (United States)

    Tuziak, Sarah M; Volkoff, Hélène

    2013-12-01

    Melanin-concentrating hormone (MCH) is classically known for its role in regulating teleost fish skin color change for environmental adaptation. Recent evidence suggests that MCH also has appetite-stimulating properties. The gonadotropin-releasing hormone (GnRH) peptide family has dual roles in endocrine control of reproduction and energy status in fish. Atlantic cod (Gadus morhua) are a commercially important aquaculture species inhabiting the shores of Atlantic Canada. In this study, we examine MCH and GnRH transcript expression profiles during early development as well as in central and peripheral tissues and quantify juvenile Atlantic cod MCH and GnRH hypothalamic mRNA expressions following food deprivation. MCH and GnRH3 cDNAs are maternally deposited into cod eggs, while MCH has variable expression throughout early development. GnRH2 and GnRH3 mRNAs "turn-on" during mid-segmentation once the brain is fully developed. For both MCH and GnRH, highest expression appears during the exogenous feeding stages, perhaps supporting their functions as appetite regulators during early development. MCH and GnRH transcripts are found in brain regions related to appetite regulation (telencephalon/preoptic area, optic tectum/thalamus, hypothalamus), as well as the pituitary gland and the stomach, suggesting a peripheral function in food intake regulation. Atlantic cod MCH mRNA is upregulated during fasting, while GnRH2 and GnRH3 transcripts do not appear to be influenced by food deprivation. In conclusion, MCH might be involved in stimulating food intake in juvenile Atlantic cod, while GnRHs may play a more significant role in appetite regulation during early development.

  14. The effect of external dummy transmitters on oxygen consumption and performance of swimming Atlantic cod

    DEFF Research Database (Denmark)

    Steinhausen, M.F.; Andersen, Niels Gerner; Steffensen, J.F.

    2006-01-01

    Decreased critical swimming speed and increased oxygen consumption (Mo-2) was found for externally tagged Atlantic cod Gadus morhua swimming at a high speed of 0 center dot 9 body length (total length, L-Gamma) s(-1). No difference was found in the standard metabolic rate, indicating...

  15. Functional genomic analysis of the response of Atlantic cod (Gadus morhua) spleen to the viral mimic polyriboinosinic polyribocytidylic acid (pIC).

    Science.gov (United States)

    Rise, Matthew L; Hall, Jennifer; Rise, Marlies; Hori, Tiago; Gamperl, A Kurt; Kimball, Jennifer; Hubert, Sophie; Bowman, Sharen; Johnson, Stewart C

    2008-01-01

    In order to improve our understanding of how Atlantic cod (Gadus morhua) respond to viruses, we characterized immune-related gene expression in spleen tissues following stimulation with a synthetic double-stranded RNA polyriboinosinic polyribocytidylic acid (pIC). We used reciprocal suppression subtractive hybridization (SSH) cDNA libraries and quantitative RTPCR (QPCR) to identify and quantify pIC-responsive transcripts. A total of 3874 expressed sequence tags (ESTs) were generated from SSH libraries enriched for genes responsive to pIC. Thirteen immune-relevant genes from the libraries were subjected to QPCR. Genes confirmed as up-regulated by pIC included interferon stimulated gene 15, a small inducible cytokine, interferon regulatory factors (1, 7, and 10), MHC class I, viperin, and ATP-dependent helicase LGP2. Alpha-1-microglobulin (bikunin) was down-regulated, suggesting that pIC may suppress the acute phase response. Since the SSH libraries built for this study identified genes involved in the antiviral response, they are important resources for studying the responses of Atlantic cod to viruses. Evidence is provided for the existence of a RIG-I-like RNA helicase viral recognition pathway in Atlantic cod. Taken together, our data show that Atlantic cod can recognize double-stranded RNA and mount a rapid and potent interferon pathway response that is similar to that observed in other fish species and higher vertebrates.

  16. Daily rhythmicity of clock gene transcripts in atlantic cod fast skeletal muscle.

    Directory of Open Access Journals (Sweden)

    Carlo C Lazado

    Full Text Available The classical notion of a centralized clock that governs circadian rhythmicity has been challenged with the discovery of peripheral oscillators that enable organisms to cope with daily changes in their environment. The present study aimed to identify the molecular clock components in Atlantic cod (Gadus morhua and to investigate their daily gene expression in fast skeletal muscle. Atlantic cod clock genes were closely related to their orthologs in teleosts and tetrapods. Synteny was conserved to varying degrees in the majority of the 18 clock genes examined. In particular, aryl hydrocarbon receptor nuclear translocator-like 2 (arntl2, RAR-related orphan receptor A (rora and timeless (tim displayed high degrees of conservation. Expression profiling during the early ontogenesis revealed that some transcripts were maternally transferred, namely arntl2, cryptochrome 1b and 2 (cry1b and cry2, and period 2a and 2b (per2a and per2b. Most clock genes were ubiquitously expressed in various tissues, suggesting the possible existence of multiple peripheral clock systems in Atlantic cod. In particular, they were all detected in fast skeletal muscle, with the exception of neuronal PAS (Per-Arnt-Single-minded domain-containing protein (npas1 and rora. Rhythmicity analysis revealed 8 clock genes with daily rhythmic expression, namely arntl2, circadian locomotor output cycles kaput (clock, npas2, cry2, cry3 per2a, nuclear receptor subfamily 1, group D, member 1 (nr1d1, and nr1d2a. Transcript levels of the myogenic genes myogenic factor 5 (myf5 and muscleblind-like 1 (mbnl1 strongly correlated with clock gene expression. This is the first study to unravel the molecular components of peripheral clocks in Atlantic cod. Taken together, our data suggest that the putative clock system in fast skeletal muscle of Atlantic cod has regulatory implications on muscle physiology, particularly in the expression of genes related to myogenesis.

  17. Skeletal muscle growth dynamics and the influence of first-feeding diet in Atlantic cod larvae (Gadus morhua L.

    Directory of Open Access Journals (Sweden)

    Tu A. Vo

    2016-11-01

    Full Text Available Dynamics between hypertrophy (increase in cell size and hyperplasia (increase in cell numbers of white and red muscle in relation to body size [standard length (SL], and the influence of the first-feeding diets on muscle growth were investigated in Atlantic cod larvae (Gadus morhua. Cod larvae were fed copepod nauplii or rotifers of different nutritional qualities from 4 to 29 days post hatching (dph, Artemia nauplii from 20 to 40 dph and a formulated diet from 36 to 60 dph. The short period of feeding with cultivated copepod nauplii had a positive effect on both muscle hyperplasia and hypertrophy after the copepod/rotifer phase (19 dph, and a positive long term effect on muscle hypertrophy (60 dph. The different nutritional qualities of rotifers did not significantly affect muscle growth. We suggest here a model of the dynamics between hyperplasia and hypertrophy of red and white muscle fibre cells in relation to cod SL (4 to 30 mm, where the different red and white muscle growth phases clearly coincided with different metamorphosis stages in cod larvae. These shifts could be included as biomarkers for the different stages of development during metamorphosis. The main dietary muscle effect was that hypertrophic growth of red muscle fibres was stronger in cod larvae that were fed copepods than in larvae that were fed rotifers, both in relation to larval age and size. Red muscle fibres are directly involved in larval locomotory performance, but may also play an important role in the larval myogenesis. This can have a long term effect on growth potential and fish performance.

  18. A moderate increase in ambient temperature modulates the Atlantic cod (Gadus morhua spleen transcriptome response to intraperitoneal viral mimic injection

    Directory of Open Access Journals (Sweden)

    Hori Tiago S

    2012-08-01

    Full Text Available Abstract Background Atlantic cod (Gadus morhua reared in sea-cages can experience large variations in temperature, and these have been shown to affect their immune function. We used the new 20K Atlantic cod microarray to investigate how a water temperature change which, simulates that seen in Newfoundland during the spring-summer (i.e. from 10°C to 16°C, 1°C increase every 5 days impacted the cod spleen transcriptome response to the intraperitoneal injection of a viral mimic (polyriboinosinic polyribocytidylic acid, pIC. Results The temperature regime alone did not cause any significant increases in plasma cortisol levels and only minor changes in spleen gene transcription. However, it had a considerable impact on the fish spleen transcriptome response to pIC [290 and 339 significantly differentially expressed genes between 16°C and 10°C at 6 and 24 hours post-injection (HPI, respectively]. Seventeen microarray-identified transcripts were selected for QPCR validation based on immune-relevant functional annotations. Fifteen of these transcripts (i.e. 88%, including DHX58, STAT1, IRF7, ISG15, RSAD2 and IκBα, were shown by QPCR to be significantly induced by pIC. Conclusions The temperature increase appeared to accelerate the spleen immune transcriptome response to pIC. We found 41 and 999 genes differentially expressed between fish injected with PBS vs. pIC at 10°C and sampled at 6HPI and 24HPI, respectively. In contrast, there were 656 and 246 genes differentially expressed between fish injected with PBS vs. pIC at 16°C and sampled at 6HPI and 24HPI, respectively. Our results indicate that the modulation of mRNA expression of genes belonging to the NF-κB and type I interferon signal transduction pathways may play a role in controlling temperature-induced changes in the spleen’s transcript expression response to pIC. Moreover, interferon effector genes such as ISG15 and RSAD2 were differentially expressed between fish injected with

  19. Distribution and drift of Atlantic cod ( Gadus morhua ) eggs and larvae in Greenland offshore waters

    DEFF Research Database (Denmark)

    Wieland, Kai; Hovgård, Holger

    2002-01-01

    Catches of Atlantic cod (Gadus morhua) eggs and larvae from 45 national and international ichthyoplankton surveys conducted in Greenland offshore waters during the period 1950 to 1984 have been compiled and re-analysed. Southeast and Southwest Greenland were identified as im- portant spawning areas...... from which eggs and early larvae drift towards the southern Davis Strait. Only a part of the larval population remained in the vicinity of favourable settling areas off West Greenland while a considerable part was obviously transported westward across the Davis Strait and thus did not contribute...... to the recruitment of the West Greenland cod stock. It is also shown that cod eggs and larvae occasionally drift from Southwest Iceland across the Denmark Strait to the East Greenland shelf from where a subsequent transport and immigration of juveniles to West Greenland waters can occur. Larval transport across...

  20. Irreversible binding of o,p'-DDD in interrenal cells of Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Lindhe, Orjan; Brandt, Ingvar; Christiansen, Jørgen Schou; Ingebrigtsen, Kristian

    2003-03-01

    Precision-cut tissue slices of the anterior kidney from Atlantic cod (Gadus morhua) were prepared with a Krumdieck tissue slicer and exposed to 2-(2-chlorophenyl)-2-(4-chloro-(14C)phenyl)-1,1-dichlorethane (o,p(')-[14C]DDD) in vitro. Microautoradiography revealed irreversible o,p(')-DDD-derived binding confined to the glucocorticoid producing interrenal cells (adrenocortical analogues). This cell-selective binding was confirmed by means of autoradiography at different levels of resolution on Atlantic cod administered o,p(')-[14C]DDD intragastrically. The results provide evidence for a site-specific metabolic activation and irreversible binding of o,p(')-DDD in the interrenal cells, which, in turn, may modify glucocorticoid homeostasis.

  1. Conserving marine biodiversity: insights from life-history trait candidate genes in Atlantic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Hansen, Jakob Hemmer; Therkildsen, Nina Overgaard; Meldrup, Dorte;

    2014-01-01

    , phenotypic studies have suggested adaptation through divergence of life-history traits among natural populations, but the distribution of adaptive genetic variation in these species is still relatively poorly known. In this study, we extract information about the geographical distribution of genetic...... variation for 33 single nucleotide polymorphisms (SNPs) associated with life-history trait candidate genes, and compare this to variation in 70 putatively neutral SNPs in Atlantic cod (Gadus morhua). We analyse samples covering the major population complexes in the eastern Atlantic and find strong evidence...

  2. Nitrogen excretion and expression of urea cycle enzymes in the atlantic cod (Gadus morhua l.): a comparison of early life stages with adults

    Science.gov (United States)

    Chadwick; Wright

    1999-10-01

    For many years, the urea cycle was considered to be relatively unimportant in the life history of most teleost fishes. In previous studies, we were surprised to find that newly hatched freshwater rainbow trout embryos had relatively high activities of the key urea cycle enzyme, carbamoyl phosphate synthetase III (CPSase III), and other enzymes in the pathway, whereas adult trout had much lower or non-detectable activities. The present study tested the hypothesis that urea cycle enzyme expression is unique to early stages of rainbow trout. In marine Atlantic cod (Gadus morhua) embryos, CPSase III, ornithine transcarbamoylase (OTCase), glutamine synthetase (GSase) and arginase activities were all expressed prior to hatching. Urea excretion was detected shortly after fertilization and rates were high relative to those of ammonia excretion (50-100 % of total nitrogen excreted as urea nitrogen; total=ammonia+urea). Urea concentration was relatively constant in embryos, but ammonia concentration increased by about fourfold during embryogenesis. Two populations of cod embryos were studied (from Newfoundland and New Brunswick), and significant differences in enzyme activities and excretion rates were detected between the two populations. In adult cod, CPSase III was not detectable in liver, white muscle, intestine and kidney tissues, but OTCase, GSase and arginase were present. Adult cod excreted about 17 % of nitrogenous waste as urea. Taken together, these data indicate that early urea cycle enzyme expression is not unique to rainbow trout but is also a feature of Atlantic cod development, and possibly other teleosts. The relatively high urea excretion rates underline the importance of urea as the primary nitrogen excretory product in Atlantic cod during early embryogenesis.

  3. Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua

    DEFF Research Database (Denmark)

    Therkildsen, Nina Overgaard; Hansen, Jakob Hemmer; Hedeholm, R.B.

    2013-01-01

    Accurate prediction of species distribution shifts in the face of climate change requires a sound understanding of population diversity and local adaptations. Previous modeling has suggested that global warming will lead to increased abundance of Atlantic cod (Gadus morhua) in the ocean around...... at some spawning grounds, whereas complete population replacement was evident at others. Observations of elevated differentiation in certain genomic regions are consistent with adaptive divergence between the groups, indicating that they may respond differently to environmental variation. Significantly...

  4. Male size composition affects male reproductive variance in Atlantic cod Gadus morhua L. spawning aggregations

    DEFF Research Database (Denmark)

    Bekkevold, Dorte

    2006-01-01

    Estimates of Atlantic cod Gadus morhua reproductive success, determined using experimental spawning groups and genetic paternity assignment of offspring, showed that within-group variance in male size correlated positively with the degree of male mating skew, predicting a decrease in male...... reproductive skew with decreasing size variation among males under natural conditions. (c) 2006 The Author Journal compilation (c) 2006 The Fisheries Society of the British Isles...

  5. Where does the cod come from? Panels of gene‐associated markers provide vastly improved origin assignment in Atlantic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Eg Nielsen, Einar; Hansen, Jakob Hemmer; Taylor, Martin

    2012-01-01

    Methods for determining the geographical origin of individual fish are in high demand for fighting illegal, unreported, and unregulated (IUU) fishing and for independent control of catch certificates and “eco‐labels”. Hitherto, genetic origin assignment of marine fish has been hampered...... relevant for controlling illegal fishing, ecolabels, and fisheries management. Our results demonstrate how application of gene‐associated markers will probably revolutionize origin assignment in cod by providing faster, cheaper, and more reliable tools for origin assignment...

  6. Isolation and characterisation of two cDNAs encoding transglutaminase from Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Furnes, Clemens; Kileng, Øyvind; Jensen, Ingvill; Karki, Pralav; Eichacker, Lutz; Robertsen, Børre

    2014-01-01

    Two cDNAs encoding transglutaminase (TG) were identified in a subtractive cDNA library prepared from the head kidney of poly I:C stimulated Atlantic cod (Gadus morhua). Full-length TG-1 and TG-2 cDNA were cloned from the head kidney by a reverse-transcription polymerase chain reaction (RT-PCR) and rapid amplification of cDNA ends (RACE). The deduced amino acid (aa) sequence for TG-1 was 695 aa with an estimated molecular mass of 78.3 kDa, while TG-2 was a 698 aa protein with an estimated molecular mass of 78.8 kDa. The two proteins were named TG-1 and TG-2 and both possess transglutaminase/protease-like homologous domains (TGc) and full conservation of amino acids cysteine, histidine, and aspartate residues that form the catalytic triad. Sequence analysis showed high similarity (93.1%) with Alaska pollock TG, and the TGs were grouped together with TGs from chum salmon, Japanese flounder, Nile tilapia, and red sea bream in addition to Alaska pollock in phylogenetic analysis. Interestingly, they showed different tissue distribution with highest constitutive expression in reproductive and immunological organs, indicating important roles in these organs. Furthermore, the up-regulation of TG-1 and TG-2 in head kidney after stimulating Atlantic cod with poly I:C suggested a role of TGs in immune response in Atlantic cod.

  7. Molecular cloning and characterization of bloodthirsty from Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Furnes, Clemens; Robertsen, Børre

    2010-12-01

    The tripartite motif (TRIM) proteins are involved in a variety of cellular functions including cell proliferation, differentiation, development, oncogenesis, apoptosis and antiviral activity. In this study, we report the identification and characterization of an Atlantic cod tripartite motif-containing protein named bloodthirsty from a poly I:C subtractive cDNA library. The Atlantic cod bloodthirsty (Acbloodthirsty) has a predicted open reading frame of 541 amino acids, encoding a putative 64-kDa protein. The N-terminal region contains the three motifs typical of TRIM proteins, a RING finger, one B-box, and a coiled-coil domain, which together form the TRIM motif found in this large family of proteins, whereas the C-terminal region contains a PRYSPRY domain. The intracellular localization of Acbloodthirsty in CHSE-214 cells showed mostly diffuse staining with some discrete compartments in the cytoplasm. The induction of bloodthirsty transcripts by poly I:C was seen in spleen using quantitative reverse transcriptase PCR (RT-qPCR). The expression pattern indicates that Acbloodthirsty is involved in antiviral immune response in Atlantic cod.

  8. The Effects of Temperature, Hypoxia and Hypercapnia on the Metabolism of Atlantic Cod Gadus morhua

    DEFF Research Database (Denmark)

    Tirsgård, Bjørn

    ). This thesis is a series of studies investigating how two of the most important abiotic environmental parameters, temperature and low oxygen levels (hypoxia) affect different aspects of larvae and juvenile Atlantic cod metabolism. The temperature studies were developed especially with the aim to be implemented...... (Hansson et al., 1996; Essington et al., 2001). By intermittent respirometry I determined the effect of temperature (2, 5, 10, 15 and 20°C) and body mass (~30-460g) on the standard metabolic rate (SMR, mg O2 h-1), maximum metabolic rate (MMR, mg O2 h-1) and the metabolic scope (MS, mg O2 h-1). The study...... the specific dynamic action (SDA) in juvenile Atlantic cod. Intermittent flow respirometry was used to measure the pre and post-feeding oxygen consumption rate of Atlantic cod fed a single meal of herring corresponding to 5% wet body mass at controlled temperatures of 2, 5, 10, 15 and 20°C. The study showed...

  9. Time changes in fishing power in the Danish cod fisheries of the Baltic Sea

    DEFF Research Database (Denmark)

    Marchal, P.; Nielsen, J. Rasmus; Hovgård, Holger

    2001-01-01

    is that their fishing power has not varied much over time. IFP is calculated for some of the Danish cod fisheries in the Baltic Sea. IFP appeared to be independent of the vessel composition of the reference sub- fleet and for the fleets fishing in the Eastern Baltic Sea. but less so for the Western Baltic Sea fleets....... Variations in IFP are analysed by a GLM (General Linear Model). Results suggest that fishing power has developed in the Eastern Baltic Sea cod fishery at an annual rate of 2% and 6% for trawlers and gillnetters respectively. Mechanisms of fishing power creeping may include increased technical efficiency......Using nominal fishing effort to control fishing mortality and using cpue data from commercial fisheries as abundance indices require ability to correct fishing power for temporal development. It is often assumed in ICES stock assessments that fishing power Is constant over time. However, experience...

  10. Conditions for instant electrical stunning of farmed Atlantic cod after de-watering, maintenance of unconsciousness, effects of stress, and fillet quality — A comparison with AQUI-S™

    NARCIS (Netherlands)

    Erikson, U.; Lambooij, E.; Digre, H.; Reimert, H.G.M.; Bondø, M.; Vis, van de H.

    2012-01-01

    Electrical stunning of farmed Atlantic cod is a method used to render the fish unconscious before further processing. However, evaluations of the stunning method at plants have shown that the electrical parameters need to be optimized to achieve instant stunning and prolonged duration of unconscious

  11. The effect of temperature and body size on metabolic scope of activity in juvenile Atlantic cod Gadus morhua L

    DEFF Research Database (Denmark)

    Tirsgaard, Bjørn; Behrens, Jane; Steffensen, John Fleng

    2015-01-01

    Changes in ambient temperature affect the physiology and metabolism and thus the distribution of fish. In this study we used intermittent flow respirometry to determine the effect of temperature (2, 5, 10, 15 and 20 °C) and wet body mass (BM) (~30–460 g) on standard metabolic rate (SMR, mg O2 h−1......), maximum metabolic rate (MMR, mg O2 h−1) and metabolic scope (MS, mg O2 h−1) of juvenile Atlantic cod. SMR increased with BM irrespectively of temperature, resulting in an average scaling exponent of 0.87 (0.82–0.92). Q10 values were 1.8–2.1 at temperatures between 5 and 15 °C but higher (2.6–4.3) between...

  12. Effects of hypoxic exposure during feeding on SDA and postprandial cardiovascular physiology in the Atlantic cod, Gadus morhua.

    Science.gov (United States)

    Behrens, Jane W; Axelsson, Michael; Neuenfeldt, Stefan; Seth, Henrik

    2012-01-01

    Some Atlantic cod in the Bornholm Basin undertake vertical foraging migrations into severely hypoxic bottom water. Hypoxic conditions can reduce the postprandial increase in gastrointestinal blood flow (GBF). This could subsequently postpone or reduce the postprandial increase in oxygen consumption (MO(2)), i.e. the SDA, leading to a disturbed digestion. Additionally, a restricted oxygen uptake could result in an oxygen debt that needs to be compensated for upon return to normoxic waters and this may also affect the ability to process the food. Long-term cardio-respiratory measurements were made on fed G. morhua in order to understand how the cardio-respiratory system of feeding fish respond to a period of hypoxia and a subsequent return to normoxia. These were exposed to 35% water oxygen saturation for 90 minutes, equivalent to the time and oxygen level cod voluntarily endure when searching for food in the Bornholm Basin. We found that i) gastric and intestinal blood flows, cardiac output and MO(2) increased after feeding, ii) gastric and intestinal blood flows were spared in hypoxia, and iii) there were no indications of an oxygen debt at the end of the hypoxic period. The magnitude and time course of the measured variables are similar to values obtained from fish not exposed to the hypoxic period. In conclusion, when cod in the field search for and ingest prey under moderate hypoxic conditions they appear to stay within safe limits of oxygen availability as we saw no indications of an oxygen debt, or negative influence on digestive capacity, when simulating field observations.

  13. Effects of hypoxic exposure during feeding on SDA and postprandial cardiovascular physiology in the Atlantic cod, Gadus morhua.

    Directory of Open Access Journals (Sweden)

    Jane W Behrens

    Full Text Available Some Atlantic cod in the Bornholm Basin undertake vertical foraging migrations into severely hypoxic bottom water. Hypoxic conditions can reduce the postprandial increase in gastrointestinal blood flow (GBF. This could subsequently postpone or reduce the postprandial increase in oxygen consumption (MO(2, i.e. the SDA, leading to a disturbed digestion. Additionally, a restricted oxygen uptake could result in an oxygen debt that needs to be compensated for upon return to normoxic waters and this may also affect the ability to process the food. Long-term cardio-respiratory measurements were made on fed G. morhua in order to understand how the cardio-respiratory system of feeding fish respond to a period of hypoxia and a subsequent return to normoxia. These were exposed to 35% water oxygen saturation for 90 minutes, equivalent to the time and oxygen level cod voluntarily endure when searching for food in the Bornholm Basin. We found that i gastric and intestinal blood flows, cardiac output and MO(2 increased after feeding, ii gastric and intestinal blood flows were spared in hypoxia, and iii there were no indications of an oxygen debt at the end of the hypoxic period. The magnitude and time course of the measured variables are similar to values obtained from fish not exposed to the hypoxic period. In conclusion, when cod in the field search for and ingest prey under moderate hypoxic conditions they appear to stay within safe limits of oxygen availability as we saw no indications of an oxygen debt, or negative influence on digestive capacity, when simulating field observations.

  14. Long distance linkage disequilibrium and limited hybridization suggest cryptic speciation in atlantic cod.

    Directory of Open Access Journals (Sweden)

    Ian R Bradbury

    Full Text Available Hybrid zones provide unprecedented opportunity for the study of the evolution of reproductive isolation, and the extent of hybridization across individuals and genomes can illuminate the degree of isolation. We examine patterns of interchromosomal linkage disequilibrium (ILD and the presence of hybridization in Atlantic cod, Gadus morhua, in previously identified hybrid zones in the North Atlantic. Here, previously identified clinal loci were mapped to the cod genome with most (∼70% occurring in or associated with (<5 kb coding regions representing a diverse array of possible functions and pathways. Despite the observation that clinal loci were distributed across three linkage groups, elevated ILD was observed among all groups of clinal loci and strongest in comparisons involving a region of low recombination along linkage group 7. Evidence of ILD supports a hypothesis of divergence hitchhiking transitioning to genome hitchhiking consistent with reproductive isolation. This hypothesis is supported by Bayesian characterization of hybrid classes present and we find evidence of common F1 hybrids in several regions consistent with frequent interbreeding, yet little evidence of F2 or backcrossed individuals. This work suggests that significant barriers to hybridization and introgression exist among these co-occurring groups of cod either through strong selection against hybrid individuals, or genetic incompatibility and intrinsic barriers to hybridization. In either case, the presence of strong clinal trends, and little gene flow despite extensive hybridization supports a hypothesis of reproductive isolation and cryptic speciation in Atlantic cod. Further work is required to test the degree and nature of reproductive isolation in this species.

  15. Atlantic reef fish biogeography and evolution

    Science.gov (United States)

    Floeter, S.R.; Rocha, L.A.; Robertson, D.R.; Joyeux, J.C.; Smith-Vaniz, W.F.; Wirtz, P.; Edwards, A.J.; Barreiros, J.P.; Ferreira, C.E.L.; Gasparini, J.L.; Brito, A.; Falcon, J.M.; Bowen, B.W.; Bernardi, G.

    2008-01-01

    Aim: To understand why and when areas of endemism (provinces) of the tropical Atlantic Ocean were formed, how they relate to each other, and what processes have contributed to faunal enrichment. Location: Atlantic Ocean. Methods: The distributions of 2605 species of reef fishes were compiled for 25 areas of the Atlantic and southern Africa. Maximum-parsimony and distance analyses were employed to investigate biogeographical relationships among those areas. A collection of 26 phylogenies of various Atlantic reef fish taxa was used to assess patterns of origin and diversification relative to evolutionary scenarios based on spatio-temporal sequences of species splitting produced by geological and palaeoceanographic events. We present data on faunal (species and genera) richness, endemism patterns, diversity buildup (i.e. speciation processes), and evaluate the operation of the main biogeographical barriers and/or filters. Results: Phylogenetic (proportion of sister species) and distributional (number of shared species) patterns are generally concordant with recognized biogeographical provinces in the Atlantic. The highly uneven distribution of species in certain genera appears to be related to their origin, with highest species richness in areas with the greatest phylogenetic depth. Diversity buildup in Atlantic reef fishes involved (1) diversification within each province, (2) isolation as a result of biogeographical barriers, and (3) stochastic accretion by means of dispersal between provinces. The timing of divergence events is not concordant among taxonomic groups. The three soft (non-terrestrial) inter-regional barriers (mid-Atlantic, Amazon, and Benguela) clearly act as 'filters' by restricting dispersal but at the same time allowing occasional crossings that apparently lead to the establishment of new populations and species. Fluctuations in the effectiveness of the filters, combined with ecological differences among provinces, apparently provide a mechanism

  16. Evidence of uptake, biotransformation and DNA binding of polyaromatic hydrocarbons in Atlantic cod and corkwing wrasse caught in the vicinity of an aluminium works.

    Science.gov (United States)

    Aas, E; Beyer, J; Jonsson, G; Reichert, W L; Andersen, O K

    2001-09-01

    Feral Atlantic cod (Gadus morhua) and corkwing wrasse (Symphodus melops) were investigated for polyaromatic hydrocarbon (PAH) contamination in the Karmsund strait, western Norway. This strait is highly contaminated with PAHs, and a main source is the chronic release of gas-scrubbing effluents from a local aluminium works. In both species, the level of biliary PAH metabolites and hepatic DNA adducts were higher in fish collected near the aluminium works. Interestingly, a significantly higher level of both biliary PAH metabolites and hepatic DNA adducts was found in corkwing wrasse as compared to cod, indicating a higher potential for genotoxic effects in this species. Hepatic cytochrome P4501A (CYP1A) in cod estimated by ethoxyresorufin-O-deethylase and an immunoassay technique (ELISA), seemed to be weakly induced at the contaminated sites. At the most contaminated site, skin ulcers and fin erosion were detected in about 70 and 45% of the cods, respectively. The data demonstrated that both cod and corkwing wrasse may be suitable target species for PAH pollution monitoring.

  17. OBTAINING THE POLAR COD PROTEIN ISOLATE AND ITS USING FOR MAYONNAISE AND MEATAND FISH FRANKFURTERS MANUFACTURING

    Directory of Open Access Journals (Sweden)

    V. I. Volchenko

    2015-01-01

    Full Text Available The technology of fish protein isolate from the low-cost raw material – the polar cod meat – was developed. The rationality of using partial alkaline-acid hydrolysis of minced fish for making fish protein isolate from the polar cod meat increasing the full-grade highly functional protein yield was proved. The most significant technological parameters influencing the physical and chemical characteristics of isolate were obtained; they are the parameters of washing and hydrolysis processes. The experiments of determination of the dependency of shelf life of the frozen raw material on physical and chemical characteristics of the raw material were carried out. The optimal quantity of washing cycles depending on the storage time was determined, it is 4 for the polar cod stored less than 4 month, and 6 for the polar cod stored more than 4 months. The dependency of temperature and pH of suspension changes during hydrolysis on the most significant quality characteristics (protein content, isolate yield by minced fish, isolate soluabilitywas obtained. The optimal values of these factors are: the temperature of 98 ˚С, pH of 11.75. The technology of manufacturing cholesterol-free mayonnaise choosing the fish protein isolate as an emulsifier was developed. The high emulsifying ability of fish protein isolate in fine emulsion “oil in water” was proved: increasing the content of isolate by 0.6 % the emulsifying ability increases by 1.85 %. The organ, oleptic microbiological, physical and chemical analyses of the mayonnaise were carried out, the recommended shelf life (30 days at the temperature from 3 to 5 ˚С was found. The fish protein isolate was also used for meat and fish frankfurters. The receipt of these frankfurters includes pork, FPI, microwave-blanched cod liver, salt, species, sugar, tomato paste, potato sctarch and yolk, liquid smoke.

  18. Bacterial composition and succession during storage of North-Atlantic cod (Gadus morhua at superchilled temperatures

    Directory of Open Access Journals (Sweden)

    Marteinsson Viggó

    2009-12-01

    Full Text Available Abstract Background The bacteriology during storage of the North-Atlantic cod has been investigated for the past decades using conventional cultivation strategies which have generated large amount of information. This paper presents a study where both conventional cultivation and cultivation independent approaches were used to investigate the bacterial succession during storage of cod loins at chilled and superchilled temperatures. Results Unbrined (0.4% NaCl and brined (2.5% NaCl cod loins were stored at chilled (0°C and superchilled (-2 and -3.6°C temperatures in air or modified atmosphere (MA, % CO2/O2/N2: 49.0 ± 0.6/7.4 ± 0.2/43.7 ± 0.4. Discrepancy was observed between cultivation enumeration and culture independent methods where the former showed a general dominance of Pseudomonas spp. (up to 59% while the latter showed a dominance of Photobacterium phosphoreum (up to 100%. Gas chromatography-mass spectrophotometry (GC-MC showed that trimethylamine was the most abundant volatile in mid- and late storage periods. Terminal restriction polymorphism (t-RFLP analysis showed that the relative abundance of P. phosphoreum increased with storage time. Conclusion The present study shows the bacteriological developments on lightly salted or non-salted cod loins during storage at superchilled temperatures. It furthermore confirms the importance of P. phosphoreum as a spoilage organism during storage of cod loins at low temperatures using molecular techniques. The methods used compensate each other, giving more detailed data on bacterial population developments during spoilage.

  19. Identification of single nucleotide polymorphisms in candidate genes for growth and reproduction in a nonmodel organism; the Atlantic cod, Gadus morhua

    DEFF Research Database (Denmark)

    Hansen, Jakob Hemmer; Eg Nielsen, Einar; Meldrup, Dorte;

    2011-01-01

    polymorphisms (SNPs) and on the development of a specific genotyping assay for 30 SNPs in 18 candidate genes for growth and reproduction in Atlantic cod (Gadus morhua). These markers can be used for scanning natural populations for signatures of selection in both contemporary and archived historical samples......, for example in retrospective studies assessing the effects of environmental changes, such as increasing temperatures, and selection imposed by high fishing pressure. Furthermore, these gene markers may be of interest to aquaculture, serving as a starting point for linking phenotypic traits important...

  20. Temperature, paternity and asynchronous hatching influence early developmental characteristics of larval Atlantic cod, Gadus morhua

    DEFF Research Database (Denmark)

    Politis, Sebastian Nikitas; Dahlke, Flemming T.; Butts, Ian A.E.

    2014-01-01

    Offspring, especially during early development, are influenced by both intrinsic properties endowed to them by their parents, extrinsic environmental factors as well as the interplay between genes and the environment. We investigated the effects of paternity (P), temperature (T), and asynchronous...... hatching on larval traits of cod, Gadus morhua from the Atlantic Ocean and the Baltic Sea. Daily cohorts of 4 half-sib families of Atlantic larvae and 5 half-sib families of Baltic larvae were incubated and hatched at 5 temperatures (Atlantic 2.0-10.0°C, Baltic 6.5-12.5°C) and imaged for notochord length......, respectively. In Baltic larvae, size at peak hatch tended to decrease with increasing T and P × T explained 34.6% of the variance. In Atlantic larvae, growth, YUR and YUE were influenced by T while P alone explained 26.0% of the variance in YUE and up to 66.4% of variance in morphological traits at 4 DPH...

  1. 76 FR 67121 - Atlantic Highly Migratory Species; 2012 Atlantic Shark Commercial Fishing Season

    Science.gov (United States)

    2011-10-31

    ... Species; 2012 Atlantic Shark Commercial Fishing Season AGENCY: National Marine Fisheries Service (NMFS... season for the Atlantic commercial shark fisheries. Quotas would be adjusted based on any over- and/or underharvests experienced during the 2010 and 2011 Atlantic commercial shark fishing seasons. In addition,...

  2. 77 FR 3393 - Atlantic Highly Migratory Species; 2012 Atlantic Shark Commercial Fishing Season

    Science.gov (United States)

    2012-01-24

    ...; 2012 Atlantic Shark Commercial Fishing Season AGENCY: National Marine Fisheries Service (NMFS... season for the Atlantic commercial shark fisheries. Quotas were adjusted based on over- and/or underharvests experienced during the 2010 and 2011 Atlantic commercial shark fishing seasons. In addition,...

  3. Photobacterium piscicola sp. nov., isolated from marine fish and spoiled packed cod

    NARCIS (Netherlands)

    Figge, Marian; Cleenwerck, Ilse; van Uijen, Astrid; de Vos, Paul; Huys, Geert; Robertson, Lesley

    2014-01-01

    Five isolates from marine fish (W3T, WM, W1S, S2 and S3) and three isolates misclassified as Photobacterium phosphoreum, originating from spoiled modified atmosphere packed stored cod (NCIMB 13482 and NCIMB 13483) and the intestine of skate (NCIMB 192), were subjected to a polyphasic taxonomic study

  4. Biomarker candidate discovery in Atlantic cod (Gadus morhua) continuously exposed to North Sea produced water from egg to fry

    DEFF Research Database (Denmark)

    Bohne-Kjersem, Anneli; Bache, Nicolai; Meier, Sonnich

    2010-01-01

    changes that may be useful as biomarker candidates of produced water (PW) and oestradiol exposure in Atlantic cod fry. The biomarker candidates discovered in this study may, following validation, prove effective as diagnostic tools in monitoring exposure and effects of discharges from the petroleum......In this study Atlantic cod (Gadus morhua) were exposed to different levels of North Sea produced water (PW) and 17beta-oestradiol (E(2)), a natural oestrogen, from egg to fry stage (90 days). By comparing changes in protein expression following E(2) exposure to changes induced by PW treatment, we...

  5. Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua

    Directory of Open Access Journals (Sweden)

    Mittelholzer Christian

    2009-12-01

    Full Text Available Abstract Background Marine fishes have been shown to display low levels of genetic structuring and associated high levels of gene flow, suggesting shallow evolutionary trajectories and, possibly, limited or lacking adaptive divergence among local populations. We investigated variation in 98 gene-associated single nucleotide polymorphisms (SNPs for evidence of selection in local populations of Atlantic cod (Gadus morhua L. across the species distribution. Results Our global genome scan analysis identified eight outlier gene loci with very high statistical support, likely to be subject to directional selection in local demes, or closely linked to loci under selection. Likewise, on a regional south/north transect of central and eastern Atlantic populations, seven loci displayed strongly elevated levels of genetic differentiation. Selection patterns among populations appeared to be relatively widespread and complex, i.e. outlier loci were generally not only associated with one of a few divergent local populations. Even on a limited geographical scale between the proximate North Sea and Baltic Sea populations four loci displayed evidence of adaptive evolution. Temporal genome scan analysis applied to DNA from archived otoliths from a Faeroese population demonstrated stability of the intra-population variation over 24 years. An exploratory landscape genetic analysis was used to elucidate potential effects of the most likely environmental factors responsible for the signatures of local adaptation. We found that genetic variation at several of the outlier loci was better correlated with temperature and/or salinity conditions at spawning grounds at spawning time than with geographic distance per se. Conclusion These findings illustrate that adaptive population divergence may indeed be prevalent despite seemingly high levels of gene flow, as found in most marine fishes. Thus, results have important implications for our understanding of the interplay of

  6. Effects of oil pollution and persistent organic pollutants (POPs) on glycerophospholipids in liver and brain of male Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Bratberg, Mari; Olsvik, Pål A; Edvardsen, Rolf B; Brekken, Hans Kristian; Vadla, Reidun; Meier, Sonnich

    2013-02-01

    Fish in the North Sea are exposed to relatively high levels of halogenated compounds in addition to the pollutants released by oil production activities. In this study male Atlantic cod (Gadus morhua) were orally exposed to environmental realistic levels (low and high) of weathered crude oil and/or a mixture of POPs for 4weeks. Lipid composition in brain and in liver extracts were analysed in order to assess the effects of the various pollutants on membrane lipid composition and fatty acid profiles. Transcriptional effects in the liver were studied by microarray and quantitative real-time RT-PCR. Chemical analyses confirmed uptake of polychlorinated biphenyls (PCBs) and chlorinated pesticides, polybrominated diphenyl ethers (PBDEs) and perfluorooctanesulfonate (PFOS) in the liver and excretion of metabolites of polyaromatic hydrocarbons (PAHs) in the bile. Treatment with POPs and/or crude oil did not induce significant changes in lipid composition in cod liver. Only a few minor changes were observed in the fatty acid profile of the brain and the lipid classes in the liver. The hypothesis that pollution from oil or POPs at environmental realistic levels alters the lipid composition in marine fish was therefore not confirmed in this study. However, the transcriptional data suggest that the fish were affected by the treatment at the mRNA level. This study suggests that a combination of oil and POPs induce the CYP1a detoxification system and gives an increase in the metabolism and clearing rate of PAHs and POPs, but with no effects on membrane lipids in male Atlantic cod.

  7. Effects of dietary fatty acids on the production and quality of eggs and larvae of Atlantic cod (Gadus morhua L.)

    DEFF Research Database (Denmark)

    Røjbek, Maria; Støttrup, Josianne; Jacobsen, Charlotte

    2014-01-01

    Cultivated Atlantic cod (Gadus morhua) entering their first year of gamete maturation were fed diets with different levels of arachidonic acid (ARA) and eicosapentaenoic acid (EPA) for 6.5 months prior to commencement of spawning. Gravid females were stripped three times: at the beginning, peak...

  8. Electrical stunning of farmed Atlantic cod Gadus morhua L.: a comparison of an industrial and experimental method

    NARCIS (Netherlands)

    Digre, H.; Erikson, U.; Misimi, E.; Lambooij, E.; Vis, van de J.W.

    2010-01-01

    An industrial and experimental electrical method for stunning farmed Atlantic cod in air and seawater (SW), respectively, were compared. The impacts of sedation with AQUI-S™ and exercise to exhaustion before electrical stunning were also assessed to monitor the possible depletion of rested muscle en

  9. A review of the evidence for genetic structure of cod ( Gadus morhua ) populations in the NW Atlantic and population affinities of larval cod off Newfoundland and the Gulf of St. Lawrence

    DEFF Research Database (Denmark)

    Ruzzante, D.E.; Taggart, C.T.; Cook, D.

    1999-01-01

    We review our recent studies on the genetic structure of Atlantic cod (Gadus morhua) populations in the NW Atlantic. Our conclusions are based on knowledge of polymorphism at microsatellite DNA loci combined with known aspects of cod biology and ecology and with known oceanographic features...... in the NW Atlantic. Three case studies illustrate genetic heterogeneity between cod populations at the meso- and large- scales of coastal embayments and offshore banks and at the small-scale of oceanographic features. Our results generally highlight the importance of combining genetic with physiological...... as barriers to gene-flow between and among neighboring and often contiguous cod populations in the NW Atlantic. We suggest that bathymetric and hydrodynamic/oceanographic structure represents a rational starting point for developing hypotheses aimed at assessing the genetic structure of high gene-flow marine...

  10. Prey exoskeletons influence the course of gastric evacuation in Atlantic cod Gadus morhua

    DEFF Research Database (Denmark)

    Couturier, C. S.; Andersen, N. G.; Audet, C.

    2013-01-01

    This study examined the effects of prey exoskeleton characteristics on gastric evacuation patterns in Atlantic cod Gadus morhua. Three distinct stages were highlighted in the gastric evacuation of crustacean prey characterized by a robust exoskeleton. The experiments confirmed that the three shrimp...... of the prey exoskeleton all affected gastric evacuation: duration of initial delay, overall evacuation rate and a decreased evacuation rate at the end of the process. The power exponential function (PEF), with its shape parameter, described the course of evacuation for these prey types well, especially...... the initial delay. The PEF does not, however, allow describing evacuation by the current stomach content mass independent of meal size, which limits its usefulness in estimating consumption rates of wild G. morhua. To predict and describe gastric evacuation of prey with a robust exoskeleton, it is therefore...

  11. Chitosan as an edible invisible film for quality preservation of herring and atlantic cod.

    Science.gov (United States)

    Jeon, You-Jin; Kamil, Janak Y V A; Shahidi, Fereidoon

    2002-08-28

    The effect of chitosan with different molecular weights as coatings for shelf-life extension of fresh fillets of Atlantic cod (Gadus morhua) and herring (Clupea harengus) was evaluated over a 12-day storage at refrigerated temperature (4 +/- 1 degrees C). Three chitosan preparations from snow crab (Chinoecetes opilio) processing wastes, differing in viscosities and molecular weights, were prepared; their apparent viscosities (360, 57, and 14 cP) depended on the deacetylation time (4, 10, and 20 h, respectively) of the chitin precursor. Upon coating with chitosans, a significant (p chitosan after 4, 6, 8, 10, and 12 days of storage, respectively. Chitosan coating significantly (p chitosan were inter-related; the efficacy of chitosans with viscosities of 57 and 360 cP was superior to that of chitosan with a 14 cP viscosity. Thus, chitosan as edible coating would enhance the quality of seafoods during storage.

  12. Prey exoskeletons influence the course of gastric evacuation in Atlantic cod Gadus morhua

    DEFF Research Database (Denmark)

    Couturier, C. S.; Andersen, N. G.; Audet, C.

    2013-01-01

    This study examined the effects of prey exoskeleton characteristics on gastric evacuation patterns in Atlantic cod Gadus morhua. Three distinct stages were highlighted in the gastric evacuation of crustacean prey characterized by a robust exoskeleton. The experiments confirmed that the three shrimp...... of the prey exoskeleton all affected gastric evacuation: duration of initial delay, overall evacuation rate and a decreased evacuation rate at the end of the process. The power exponential function (PEF), with its shape parameter, described the course of evacuation for these prey types well, especially...... the initial delay. The PEF does not, however, allow describing evacuation by the current stomach content mass independent of meal size, which limits its usefulness in estimating consumption rates of wild G. morhua. To predict and describe gastric evacuation of prey with a robust exoskeleton, it is therefore...

  13. Correlation between microbiota and growth in Mangrove Killifish (Kryptolebias marmoratus) and Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Forberg, Torunn; Sjulstad, Eli Bjørnø; Bakke, Ingrid; Olsen, Yngvar; Hagiwara, Atsushi; Sakakura, Yoshitaka; Vadstein, Olav

    2016-02-15

    The vertebrate gut is host to large communities of bacteria, and one of the beneficial contributions of this commensal gut microbiota is the increased nutritional gain from feed components that the host cannot degrade on its own. Fish larvae of similar age and under the same rearing conditions often diverge with regards to growth. The underlying reasons for this could be differences in genetic background, feeding behavior or digestive capacity. Both feeding behavior and digestion can be influenced by differences in the microbiota. To investigate possible correlations between the size of fish larvae and their gut microbiota, we analyzed the microbiota small and large genetically homogenous killifish and genetically heterogeneous cod larvae by Bray-Curtis Similarity measures of 16S DNA DGGE patterns. A significant difference in richness (p = 0.037) was observed in the gut microbiota of small and large killifish, but the overall gut microbiota was not found to be significantly different (p = 0.13), indicating strong genetic host selection on microbiota composition at the time of sampling. The microbiota of small and large cod larvae was significantly different with regards to evenness and diversity (p = 0.0001), and a strong correlation between microbiota and growth was observed.

  14. Characterization of the fatty acyl elongase (elovl) gene family, and hepatic elovl and delta-6 fatty acyl desaturase transcript expression and fatty acid responses to diets containing camelina oil in Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Xue, Xi; Feng, Charles Y; Hixson, Stefanie M; Johnstone, Kim; Anderson, Derek M; Parrish, Christopher C; Rise, Matthew L

    2014-09-01

    For aquaculture to become sustainable, there is a need to substitute fish oil [FO, rich in ω3 long chain polyunsaturated fatty acids (LC-PUFA) such as 20:5ω3 (EPA) and 22:6ω3 (DHA)] in aquafeed with plant oils such as camelina oil [CO, rich in C18 PUFA such as 18:3ω3 (ALA) and 18:2ω6 (LNA)]. The LC-PUFA are essential components in fish diets for maintaining optimal health, physiology and growth. However, most marine fish including Atlantic cod are inefficient at producing LC-PUFA from shorter chain precursors. Since elovl genes encode enzymes that play key roles in fatty acid biosynthesis, we hypothesized that they may be involved in Atlantic cod responses to diets rich in 18:3ω3 and 18:2ω6. Ten members of the cod elovl gene family were characterized at the mRNA level. RT-PCR was used to study constitutive expression of elovl transcripts in fifteen tissues. Some transcripts (e.g. elovl5) were ubiquitously expressed, while others had tissue-specific expression (e.g. elovl4a in brain and eye). Cod fed a CO-containing diet (100% CO replacement of FO and including solvent-extracted fish meal) had significantly lower weight gain, with significant up-regulation of elovl5 and fadsd6 transcripts in the liver as shown by QPCR analysis, compared with cod on a FO control diet after a 13-week trial. Multivariate statistical analyses (SIMPER and PCA) indicated that high 18:3ω3 and/or low ω3 LC-PUFA levels in the liver were associated with the up-regulation of elovl5 and fadsd6, which are involved in LC-PUFA biosynthesis in cod.

  15. Effects of long-term temperature acclimation on thyroid hormone deiodinase function, plasma thyroid hormone levels, growth, and reproductive status of male Atlantic cod, Gadus morhua.

    Science.gov (United States)

    Cyr, D G; Idler, D R; Audet, C; McLeese, J M; Eales, J G

    1998-01-01

    The recent collapse of the Northwestern Atlantic cod fisheries has coincided with a cooling of water temperatures. During this time the condition factor of cod has been poor. The objective of the present study was to determine the effects of long-term temperature acclimation on growth reproduction and thyroid function in laboratory held Atlantic cod (Gadus morhua). One of the key parameters used to assess thyroid function is the peripheral metabolism of L-thyroxine (T4) by microsomal deiodinase enzymes. Deiodinase function has not been described for gadid fish. T4 outer-ring deiodinating activity (apparent K(m) 1-2 nM) was confined primarily to liver. Its properties resembled those for hepatic T4ORD activity of other teleosts and the mammalian type II deiodinase. The T4ORD activity of cod liver exceeded that of salmonids and could explain the high plasma T3 levels (10-18 ng/ml), which were 2-5 times greater than T4 levels. T4 and T3 inner-ring deiodination was confined mainly to brain. In order to determine the effects of long-term temperature acclimation on cod, somatic growth, reproduction, and thyroidal status were assessed monthly in 400-900-g satiation-fed male Atlantic cod captured in June from the St. Lawrence Estuary and then acclimated from August to the following June under a natural photoperiod at 2-4 degrees C (LT) or 6-10 degrees C (HT). Reproductive status was determined from the gonadosomatic index (GSI), plasma testosterone (T) and 11-ketotestosterone (11-KT) levels, and the appearance of milt; thyroidal status was determined from plasma T4 and 3,5,3'-triiodo-L-thyronine (T3) levels and hepatic T4ORD activity to produce biologically active T3. Testis maturation (high levels of 1 and 11-KT, and milt release) occurred in April and May and was uninfluenced by acclimation temperature. LT cod grew more slowly than HT cod. Differences in body weight were particularly evident from December to February. In conclusion, (i) cod possess outer- and inner

  16. Probiotics-pathogen interactions elicit differential regulation of cutaneous immune responses in epidermal cells of Atlantic cod Gadus morhua.

    Science.gov (United States)

    Lazado, Carlo C; Caipang, Christopher Marlowe A

    2014-01-01

    Little is known on the cutaneous immune responses during probiotics-pathogen interactions in fish. Thus, this study employed Atlantic cod primary epidermal (EP) cell cultures as a model to understand this interaction. The probiotics-pathogen interactions in the EP cell cultures were elucidated using Vibrio anguillarum 2133 (VA) as the pathogen and two host-derived bacteria (GP21 and GP12) as the probiotics. There was a regional size difference on the EP cells; i.e., EP cells from the dorsal region were significantly larger than the EP cells at the ventral side. VA significantly decreased viability of EP cells. In the presence of probiotics, this inhibition was mitigated. The probiotics reduced VA-induced cellular apoptosis and the probiotics-pathogen interactions influenced cellular myeloperoxidase activity during the latter stage of co-incubation. The probiotics-pathogen interactions triggered differential regulation of immune-related genes and the effects of the interaction were dependent on the region where the cells were isolated and the length of the co-incubation period. In most cases, the presence of probiotics alone showed no significant change on the mRNA level of immune genes in the EP cells but triggered immunostimulatory activity when incubated with VA. This study showed that the virulence of VA in EP cells could be modulated by host-derived probiotics and the immunomodulatory characteristics of the two candidate probionts advanced their immune-related probiotic potential.

  17. Investigation of fixed wavelength fluorescence results for biliary metabolites of polycyclic aromatic hydrocarbons formed in Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Pampanin, Daniela M; Kemppainen, Eeva K; Skogland, Karianne; Jørgensen, Kåre B; Sydnes, Magne O

    2016-02-01

    Fixed wavelength fluorescence (FF) and synchronous fluorescence scanning (SFS) of fish bile are commonly used methods to analyze for exposure to polycyclic aromatic hydrocarbons (PAHs) from petrogenic and pyrogenic sources. A range of conjugated oxidation products from petrogenic PAHs are normally accumulated in the bile. Therefore their detection is important. In the present study, phenanthrene and naphthalene metabolites, formed in vivo in Atlantic cod (Gadus morhua), were used to study the response of these compounds in both FF and SFS analyses. The selected synthetic metabolites were (-)-(1R,2R)-1,2-dihydrophenanthrene-1,2-diol and (-)-(1R,2R)-1,2-dihydronaphthalene-1,2-diol. The study findings showed that the recommended excitation and emission wavelengths for FF analysis do not comprise the maximum emission wavelengths for these metabolites, providing an incorrect estimation of the PAH exposure. A method developed in our laboratory for the synthesis of (-)-(1R,2R)-1,2-dihydrophenanthrene-1,2-diol is also described.

  18. Ocean Acidification Portends Acute Habitat Compression for Atlantic Cod (Gadus morhua) in a Physiologically-informed Metabolic Rate Model

    Science.gov (United States)

    Del Raye, G.; Weng, K.

    2011-12-01

    Ocean acidification affects organisms on a biochemical scale, yet its societal impacts manifest from changes that propagate through entire populations. Successful forecasting of the effects of ocean acidification therefore depends on at least two steps: (1) deducing systemic physiology based on subcellular stresses and (2) scaling individual physiology up to ecosystem processes. Predictions that are based on known biological processes (process-based models) may fare better than purely statistical models in both these steps because the latter are less robust to novel environmental conditions. Here we present a process-based model that uses temperature, pO2, and pCO2 to predict maximal aerobic scope in Atlantic cod. Using this model, we show that (i) experimentally-derived physiological parameters are sufficient to capture the response of cod aerobic scope to temperature and oxygen, and (ii) subcellular pH effects can be used to predict the systemic physiological response of cod to an acidified ocean. We predict that acute pH stress (on a scale of hours) could limit the mobility of Atlantic cod during diel vertical migration across a pCO2 gradient, promoting habitat compression. Finally, we use a global sensitivity analysis to identify opportunities for the improvement of model uncertainty as well as some physiological adaptations that could mitigate climate stresses on cod in the future.

  19. Thermal niche of Atlantic cod Gadus morhua: limits, tolerance and optima

    DEFF Research Database (Denmark)

    Righton, David A.; Andersen, Ken Haste; Neat, Francis

    2010-01-01

    in those cod with a mean thermal history of between 8 and 10°C. Our direct observations of habitat occupation suggest that adult cod will be able to tolerate warming seas, but that climate change will affect cod populations at earlier life-history stages as well as exerting effects on cod prey species....

  20. 77 FR 61562 - Atlantic Highly Migratory Species; 2013 Atlantic Shark Commercial Fishing Season

    Science.gov (United States)

    2012-10-10

    ... Species; 2013 Atlantic Shark Commercial Fishing Season AGENCY: National Marine Fisheries Service (NMFS... season for the Atlantic commercial shark fisheries. Quotas would be adjusted as allowable based on any over- and/or underharvests experienced during the 2011 and 2012 Atlantic commercial shark...

  1. Validation of reference genes for quantitative RT-qPCR studies of gene expression in Atlantic cod (Gadus morhua l. during temperature stress

    Directory of Open Access Journals (Sweden)

    Karlsen Hans E

    2011-04-01

    that both transcripts were significantly upregulated in several tissues in fish exposed to increased temperature. Conclusion This is the first study comparing reference genes for RT-qPCR analyses of expression during hyperthermia in Atlantic cod. ef1a, 18s, rplp1 and ubiq transcripts were found to be well suited as reference genes during these experimental conditions.

  2. Biological effects of polycyclic aromatic hydrocarbons (PAH) and their first metabolic products in in vivo exposed Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Pampanin, Daniela M; Le Goff, Jeremie; Skogland, Karianne; Marcucci, Cristian R; Øysæd, Kjell Birger; Lorentzen, Marianne; Jørgensen, Kåre B; Sydnes, Magne O

    2016-01-01

    The monitoring of the presence of polycyclic aromatic hydrocarbons (PAH) in the aquatic environment is a worldwide activity since some of these compounds are well-established carcinogens and mutagens. Contaminants in this class are in fact regarded as priority hazardous substances for environmental pollution (Water Framework Directive 2000/60/EC). In this study, Atlantic cod (Gadus morhua) was selected to assess in vivo effects of two PAH and their first metabolic products, namely, the corresponding trans-dihydrodiols, using biological markers. Fish were exposed for 1 wk to a single PAH (naphthalene or chrysene) and its synthetic metabolites ((1R,2R)-1,2-dihydronaphthalene-1,2-diol and (1R,2R)-1,2-dihydrochrysene-1,2-diol) by intraperitoneal injection in a continuous seawater flow system. After exposure, PAH metabolism including PAH metabolites in bile and ethoxyresorufin O-deethylase (EROD) activity, oxidative stress glutathione S-transferases (GST) and catalase (CAT) activities, and genotoxicity such as DNA adducts were evaluated, as well as general health conditions including condition index (CI), hepatosomatic index (HSI), and gonadosomatic index (GSI). PAH metabolite values were low and not significantly different when measured with the fixed-wavelength fluorescence screening method, while the gas chromatography-mass spectroscopy (GC-MS) method showed an apparent dose response in fish exposed to naphthalene. DNA adduct levels ≥0.16 × 10(-8) relative adduct level (RAL) were detected. It should be noted that 0.16 × 10(-8) RAL is considered the maximal acceptable background level for this species. The other biomarkers activities of catalase, GST, and EROD did not display a particular compound- or dose-related response. The GSI values were significantly lower in some chrysene- and in both naphthalene- and naphthalene diol-exposed groups compared to control.

  3. 78 FR 52487 - Atlantic Highly Migratory Species; 2014 Atlantic Shark Commercial Fishing Season

    Science.gov (United States)

    2013-08-23

    ... Species; 2014 Atlantic Shark Commercial Fishing Season AGENCY: National Marine Fisheries Service (NMFS... season for the Atlantic commercial shark fisheries. Quotas would be adjusted as allowable based on any..., fishing opportunities for commercial shark fishermen in all regions and areas. The proposed measures...

  4. Analysing migrations of Atlantic cod Gadus morhua in the north‐east Atlantic Ocean

    DEFF Research Database (Denmark)

    Neuenfeldt, S.; Righton, D.; Neat, F.;

    2013-01-01

    The application of data storage tags bears the potential for a quantum leap in the research on fish migrations, because not only first-capture and recapture positions are known, but at least theoretically, the migration path during the period at large can be reconstructed. Position, however, cannot...... descriptions, separation of reproductively isolated populations, timing and areas of spawning, tidal transport and use of protected areas. The examples are based on archival tag data from the North Sea, the Baltic Sea, the Barents Sea and Faroese and Icelandic Waters. Besides presenting the state...

  5. Seasonal variation in biomarkers in blue mussel (Mytilus edulis), Icelandic scallop (Chlamys islandica) and Atlantic cod (Gadus morhua)-Implications for environmental monitoring in the Barents Sea

    Energy Technology Data Exchange (ETDEWEB)

    Nahrgang, J., E-mail: jasmine.m.nahrgang@uit.no [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); Brooks, S.J. [Norwegian Institute for Water Research (NIVA), NO-0349 Oslo (Norway); Evenset, A. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); Camus, L. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); University Centre In Svalbard (UNIS), NO-9171 Longyearbyen (Norway); Jonsson, M.; Smith, T.J. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); Lukina, J. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); University of Tromso, Faculty of Biosciences, Fisheries and Economics, Department of Arctic and Marine Biosciences, NO-9037 Tromso (Norway); Frantzen, M. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); Giarratano, E. [Centro Nacional Patagonico (CENPAT-CONICET), AR-9120 Puerto Madryn (Argentina); Renaud, P.E. [Akvaplan-niva, FRAM Centre, NO-9296 Tromso (Norway); University Centre In Svalbard (UNIS), NO-9171 Longyearbyen (Norway)

    2013-02-15

    In the Barents Sea, the limited data on biological relevant indicators and their responses to various anthropogenic stressors have hindered the development of a consistent scientific basis for selecting indicator species and developing practical procedures for environmental monitoring. Accordingly, the main aim of the present study was to develop a common set of baseline values for contaminants and biomarkers in three species, and to identify their strengths and limitations in monitoring of the Barents Sea. Blue mussel (Mytilus edulis), Icelandic scallop (Chlamys islandica) and Atlantic cod (Gadus morhua) were sampled from a north Norwegian fjord in March, June, September and December 2010. Digestive glands from the bivalve species and liver from Atlantic cod were analysed for biomarkers of oxidative stress (catalase [CAT], glutathione peroxidase [GPX], glutathione-S-transferase activities [GST], lipid peroxidation as thiobarbituric reactive substances [TBARS] and total oxyradical scavenging capacity [TOSC]), biotransformation (ethoxyresorufine-O-deethylase activity [EROD]) and general stress (lysosomal membrane stability [LMS]). Concentrations of polycyclic aromatic hydrocarbons (PAHs) and metals in the bivalves and PAH metabolites in fish bile were quantified. Finally, energy reserves (total lipids, proteins and carbohydrates) and electron transport system (ETS) activity in the digestive gland of the bivalves and liver of Atlantic cod provided background information for reproductive cycle and general physiological status of the organisms. Blue mussel and Icelandic scallop showed very similar trends in biological cycle, biomarker expression and seasonality. Biomarker baselines in Atlantic cod showed weaker seasonal variability. However, important biological events may have been undetected due to the large time intervals between sampling occasions. Physiological biomarkers such as energy reserves and ETS activity were recommended as complementary parameters to the

  6. Effects of Technological Parameters and Fishing Ground on Quality Attributes of Thawed, Chilled Cod Fillets Stored in Modified Atmosphere Packaging

    DEFF Research Database (Denmark)

    Bøknæs, Niels; Østerberg, Carsten; Sørensen, Rie

    2001-01-01

    Effects were studied of various technological parameters and fishing ground on quality attributes of thawed, chilled cod fillets stored in modified atmosphere packaging Frozen fillets of Baltic Sea and Barents Sea cod, representing two commercial fishing grounds, were used as raw material...... frozen storage is more appropriate for manufacturing of thawed chilled MAP cod fillets. During chill storage of thawed MAP Barents Sea fillets previously kept at -30degreesC for 15 weeks, significant growth of Photobacterium phosphoreum and production of trimethylamine were observed. Oil the contrary, P....... phosphoreum growth and trimethylamine production in thawed and chill-stored MAP Baltic Sea cod fillets were strongly inhibited after as little as 4 weeks of frozen storage at -30degreesC. Contents of trimethylamine oxide and NaCl were substantially higher in fillets of Barents Sea cod compared to fillets...

  7. Fishing cod in the Baltic Sea - Gambling with the ecosystem services

    Science.gov (United States)

    Björkman, Sven; Nordlöf, Anders

    2014-05-01

    The population of cod in the Baltic sea has over the last decades decreased due to overfishing. To make the students aware of this problem and also to find a solution they are introduced to a game. The purpose of the game is to let the students know how to use renewable natural resources in these aspects; 1 Fishing cod without using it up 2 That solidarity is needed if you are sharing a resource 3 That cooperation is the key to keeping a natural resource healthy. The students are fishermen in group of four and are equipped with a boat. The playing board is a map over the Baltic sea. The rules of the game include the carrying capacity of the sea, how much fish one fishing boat is allowed to pick up, how much it costs to have a boat, and possibilities to buy a bigger boat. The game has two rounds: In round one the students in the group are competing against each other, they are not allowed to talk to each other and they are supposed to get as much fish as they can. As a consequence after round one the sea will become empty. In round two the groups compete with each other and they are coworking within the group. After this round the result is different from the first round. The catches are bigger than in round one and still there are cod left in the sea, which will generate a good fishing in the future.. The discussions after the game can be about why the two rounds ended so different, general discussion about "tragedy of the commons", sustainable use of ecosystem services and discussions about resources in common.

  8. Effects of ocean acidification increase embryonic sensitivity to thermal extremes in Atlantic cod, Gadus morhua.

    Science.gov (United States)

    Dahlke, Flemming T; Leo, Elettra; Mark, Felix C; Pörtner, Hans-Otto; Bickmeyer, Ulf; Frickenhaus, Stephan; Storch, Daniela

    2017-04-01

    Thermal tolerance windows serve as a powerful tool for estimating the vulnerability of marine species and their life stages to increasing temperature means and extremes. However, it remains uncertain to which extent additional drivers, such as ocean acidification, modify organismal responses to temperature. This study investigated the effects of CO2 -driven ocean acidification on embryonic thermal sensitivity and performance in Atlantic cod, Gadus morhua, from the Kattegat. Fertilized eggs were exposed to factorial combinations of two PCO2 conditions (400 μatm vs. 1100 μatm) and five temperature treatments (0, 3, 6, 9 and 12 °C), which allow identifying both lower and upper thermal tolerance thresholds. We quantified hatching success, oxygen consumption (MO2 ) and mitochondrial functioning of embryos as well as larval morphometrics at hatch and the abundance of acid-base-relevant ionocytes on the yolk sac epithelium of newly hatched larvae. Hatching success was high under ambient spawning conditions (3-6 °C), but decreased towards both cold and warm temperature extremes. Elevated PCO2 caused a significant decrease in hatching success, particularly at cold (3 and 0 °C) and warm (12 °C) temperatures. Warming imposed limitations to MO2 and mitochondrial capacities. Elevated PCO2 stimulated MO2 at cold and intermediate temperatures, but exacerbated warming-induced constraints on MO2 , indicating a synergistic interaction with temperature. Mitochondrial functioning was not affected by PCO2 . Increased MO2 in response to elevated PCO2 was paralleled by reduced larval size at hatch. Finally, ionocyte abundance decreased with increasing temperature, but did not differ between PCO2 treatments. Our results demonstrate increased thermal sensitivity of cod embryos under future PCO2 conditions and suggest that acclimation to elevated PCO2 requires reallocation of limited resources at the expense of embryonic growth. We conclude that ocean acidification constrains

  9. Atlantic cod (Gadus morhua L.) possesses three homologues of ISG15 with different expression kinetics and conjugation properties.

    Science.gov (United States)

    Furnes, Clemens; Kileng, Øyvind; Rinaldo, Christine Hanssen; Seppola, Marit; Jensen, Ingvill; Robertsen, Børre

    2009-12-01

    Two new interferon stimulated gene 15 (ISG15) family members were identified in a subtractive cDNA library constructed from a mixture of head kidney and spleen of Atlantic cod (Gadus morhua) stimulated with polyinosinic:polycytidylic acid (poly I:C). Two full-length Atlantic cod (Ac) ISG15-2 and AcISG15-3 cDNAs were cloned with rapid amplification of cDNA ends (RACE). The cDNA sequence of AcISG15-2 encodes a 16.9kDa protein and AcISG15-3 encodes a 18.4kDa protein, both of which possess the characteristic structural features of two tandem ubiquitin-like domains and the LRGG motif necessary for conjugation. Furthermore, the AcISG15-3 protein is expressed with a C-terminal extension in common with the human ISG15 protein. Gene expression analysis using quantitative reverse transcriptase PCR (RT-qPCR) showed that AcISG15-1, AcISG15-2, and AcISG15-3 transcripts were up-regulated in head kidney after poly I:C stimulation, suggesting that these proteins may be involved in the cod immune response. However, transient expression of myc-tagged AcISG15 proteins revealed differences in their abilities to form conjugates in vitro. We show that AcISG15-2 forms covalent conjugates to a range of cellular protein as a response to poly I:C, recombinant Atlantic salmon IFNa1 (rSasaIFNa1) and infectious pancreatic necrosis virus (IPNV), whereas conjugation was absent for AcISG15-1 and AcISG15-3. Thus, these results suggest there are three ISG15 homologues in Atlantic cod and that the three proteins may play different roles in innate immunity.

  10. Identification of Atlantic cod (Gadus morhua), ling (Molva molva), and Alaska pollock (Gadus chalcogrammus) by PCR-ELISA using duplex PCR.

    Science.gov (United States)

    Taboada, Ledicia; Sánchez, Ana; Velasco, Amaya; Santaclara, Francisco J; Pérez-Martín, Ricardo I; Sotelo, Carmen G

    2014-06-18

    Species-specific PCR-ELISA assays for the identification of Atlantic cod (Gadus morhua), Alaska pollock (Gadus chalcogrammus), and ling (Molva molva) in food products have been developed. The method, comprising a set of primers common to the first two species, a set of primers for M. molva, and a probe for each species, was designed using ND4 and cytochrome b genes as molecular markers. The sensitivity and selectivity were then determined for each assay. These assays were afterward used to analyze DNA extracted from commercial fish products. The presence of the target species was successfully detected in all analyzed samples, demonstrating the applicability of this method to the analysis of food products.

  11. Copepods enhance nutritional status, growth and development in Atlantic cod (Gadus morhua L. larvae — can we identify the underlying factors?

    Directory of Open Access Journals (Sweden)

    Ørjan Karlsen

    2015-05-01

    Full Text Available The current commercial production protocols for Atlantic cod depend on enriched rotifers and Artemia during first-feeding, but development and growth remain inferior to fish fed natural zooplankton. Two experiments were conducted in order to identify the underlying factors for this phenomenon. In the first experiment (Exp-1, groups of cod larvae were fed either (a natural zooplankton, mainly copepods, increasing the size of prey as the larvae grew or (b enriched rotifers followed by Artemia (the intensive group. In the second experiment (Exp-2, two groups of larvae were fed as in Exp-1, while a third group was fed copepod nauplii (approximately the size of rotifers throughout the larval stage. In both experiments, growth was not significantly different between the groups during the first three weeks after hatching, but from the last part of the rotifer feeding period and onwards, the growth of the larvae fed copepods was higher than that of the intensive group. In Exp-2, the growth was similar between the two copepod groups during the expeimental period, indicating that nutrient composition, not prey size caused the better growth on copepods. Analyses of the prey showed that total fatty acid composition and the ratio of phospholipids to total lipids was slightly different in the prey organisms, and that protein, taurine, astaxanthin and zinc were lower on a dry weight basis in rotifers than in copepods. Other measured nutrients as DHA, all analysed vitamins, manganese, copper and selenium were similar or higher in the rotifers. When compared to the present knowledge on nutrient requirements, protein and taurine appeared to be the most likely limiting nutrients for growth in cod larvae fed rotifers and Artemia. Larvae fed rotifers/Artemia had a higher whole body lipid content than larvae fed copepods at the end of the experiment (stage 5 after the fish had been fed the same formulated diet for approximately 2 weeks.

  12. Climate change and fishing: a century of shifting distribution in North Sea cod.

    Science.gov (United States)

    Engelhard, Georg H; Righton, David A; Pinnegar, John K

    2014-08-01

    Globally, spatial distributions of fish stocks are shifting but although the role of climate change in range shifts is increasingly appreciated, little remains known of the likely additional impact that high levels of fishing pressure might have on distribution. For North Sea cod, we show for the first time and in great spatial detail how the stock has shifted its distribution over the past 100 years. We digitized extensive historical fisheries data from paper charts in UK government archives and combined these with contemporary data to a time-series spanning 1913-2012 (excluding both World Wars). New analysis of old data revealed that the current distribution pattern of cod - mostly in the deeper, northern- and north-easternmost parts of the North Sea - is almost opposite to that during most of the Twentieth Century - mainly concentrated in the west, off England and Scotland. Statistical analysis revealed that the deepening, northward shift is likely attributable to warming; however, the eastward shift is best explained by fishing pressure, suggestive of significant depletion of the stock from its previous stronghold, off the coasts of England and Scotland. These spatial patterns were confirmed for the most recent 3 1/2 decades by data from fisheries-independent surveys, which go back to the 1970s. Our results demonstrate the fundamental importance of both climate change and fishing pressure for our understanding of changing distributions of commercially exploited fish. © 2013 Crown copyright. Global Change Biology published by John Wiley & Sons Ltd. This article is published with the permission of the Controller of HMSO and the Queen's Printer for Scotland.

  13. 77 FR 75896 - Atlantic Highly Migratory Species; 2013 Atlantic Shark Commercial Fishing Season

    Science.gov (United States)

    2012-12-26

    ... Species; 2013 Atlantic Shark Commercial Fishing Season AGENCY: National Marine Fisheries Service (NMFS... the Atlantic commercial shark fisheries (sandbar sharks, non-sandbar large coastal sharks, blue sharks, porbeagle sharks, and pelagic sharks (other than porbeagle and blue sharks), non-blacknose small...

  14. 78 FR 70500 - Atlantic Highly Migratory Species; 2014 Atlantic Shark Commercial Fishing Seasons

    Science.gov (United States)

    2013-11-26

    ...; 2014 Atlantic Shark Commercial Fishing Seasons AGENCY: National Marine Fisheries Service (NMFS... for the Atlantic commercial shark fisheries. The quota adjustments are based on over- and/or... for commercial shark fishermen in all regions and areas. These actions could affect...

  15. Temperature modulates the effects of ocean acidification on intestinal ion transport in Atlantic cod, Gadus morhua

    Directory of Open Access Journals (Sweden)

    Marian Yong-An Hu

    2016-06-01

    Full Text Available CO2-driven seawater acidification has been demonstrated to enhance intestinal bicarbonate secretion rates in teleosts, leading to an increased release of CaCO3 under simulated ocean acidification scenarios. In this study, we investigated if increasing CO2 levels stimulate the intestinal acid–base regulatory machinery of Atlantic cod (Gadus morhua and whether temperatures at the upper limit of thermal tolerance stimulate or counteract ion regulatory capacities. Juvenile G. morhua were acclimated for four weeks to three CO2 levels (550, 1,200 and 2,200 μatm covering present and near-future natural variability, at optimum (10°C and summer maximum temperature (18°C, respectively. Immunohistochemical analyses revealed the subcellular localization of ion transporters, including Na+/K+-ATPase (NKA, Na+/H+-exchanger 3 (NHE3, Na+/HCO3- cotransporter (NBC1, pendrin-like Cl-/HCO3- exchanger (SLC26a6, V-type H+-ATPase subunit a (VHA and Cl- channel 3 (CLC3 in epithelial cells of the anterior intestine. At 10°C, proteins and mRNA were generally up-regulated for most transporters in the intestinal epithelium after acclimation to higher CO2 levels. This supports recent findings demonstrating increased intestinal HCO3- secretion rates in response to CO2 induced seawater acidification. At 18°C, mRNA expression and protein concentrations of most ion transporters remained unchanged or were even decreased, suggesting thermal compensation. This response may be energetically favorable to retain blood HCO3- levels to stabilize pHe, but may negatively affect intestinal salt and water resorption of marine teleosts in future oceans.

  16. Temperature Modulates the Effects of Ocean Acidification on Intestinal Ion Transport in Atlantic Cod, Gadus morhua

    Science.gov (United States)

    Hu, Marian Y.; Michael, Katharina; Kreiss, Cornelia M.; Stumpp, Meike; Dupont, Sam; Tseng, Yung-Che; Lucassen, Magnus

    2016-01-01

    CO2-driven seawater acidification has been demonstrated to enhance intestinal bicarbonate secretion rates in teleosts, leading to an increased release of CaCO3 under simulated ocean acidification scenarios. In this study, we investigated if increasing CO2 levels stimulate the intestinal acid–base regulatory machinery of Atlantic cod (Gadus morhua) and whether temperatures at the upper limit of thermal tolerance stimulate or counteract ion regulatory capacities. Juvenile G. morhua were acclimated for 4 weeks to three CO2 levels (550, 1200, and 2200 μatm) covering present and near-future natural variability, at optimum (10°C) and summer maximum temperature (18°C), respectively. Immunohistochemical analyses revealed the subcellular localization of ion transporters, including Na+/K+-ATPase (NKA), Na+/H+-exchanger 3 (NHE3), Na+/HCO3− cotransporter (NBC1), pendrin-like Cl−/HCO3− exchanger (SLC26a6), V-type H+-ATPase subunit a (VHA), and Cl− channel 3 (CLC3) in epithelial cells of the anterior intestine. At 10°C, proteins and mRNA were generally up-regulated for most transporters in the intestinal epithelium after acclimation to higher CO2 levels. This supports recent findings demonstrating increased intestinal HCO3− secretion rates in response to CO2 induced seawater acidification. At 18°C, mRNA expression and protein concentrations of most ion transporters remained unchanged or were even decreased, suggesting thermal compensation. This response may be energetically favorable to retain blood HCO3− levels to stabilize pHe, but may negatively affect intestinal salt and water resorption of marine teleosts in future oceans. PMID:27313538

  17. Multi-decadal responses of a cod (Gadus morhua) population to human-induced trophic changes, fishing, and climate

    DEFF Research Database (Denmark)

    Eero, Margit; MacKenzie, Brian; Köster, Fritz

    2011-01-01

    Understanding how human impacts have interacted with natural variability to affect populations and ecosystems is required for sustainable management and conservation. The Baltic Sea is one of the few large marine ecosystems worldwide where the relative contribution of several key forcings...... to changes in fish populations can be analyzed with empirical data. In this study we investigate how climate variability and multiple human impacts (fishing, marine mammal hunting, eutrophication) have affected multi-decadal scale dynamics of cod in the Baltic Sea during the 20th century.We document......-average cod productivity coupled to a temporary reduction in fishing pressure. The Baltic cod example demonstrates how combinations of different forcings can have synergistic effects and consequently dramatic impacts on population dynamics. Our results highlight the potential and limitations of human...

  18. In vitro and ex vivo models indicate that the molecular clock in fast skeletal muscle of Atlantic cod is not autonomous.

    Science.gov (United States)

    Lazado, Carlo C; Kumaratunga, Hiruni P S; Nagasawa, Kazue; Babiak, Igor; Caipang, Christopher Marlowe A; Fernandes, Jorge M O

    2014-10-01

    The notion that the circadian rhythm is exclusively regulated by a central clock has been challenged by the discovery of peripheral oscillators. These peripheral clocks are known to have a direct influence on the biological processes in a tissue or cell. In fish, several peripheral clocks respond directly to light, thus raising the hypothesis of autonomous regulation. Several clock genes are expressed with daily rhythmicity in Atlantic cod (Gadus morhua) fast skeletal muscle. In the present study, myosatellite cell culture and short-term cultured fast skeletal muscle explant models were developed and characterized, in order to investigate the autonomy of the clock system in skeletal muscle of Atlantic cod. Myosatellite cells proliferated and differentiated in vitro, as shown by the changes in cellular and myogenic gene markers. The high expression of myogenic differentiation 1 during the early days post-isolation implied the commitment to myogenic lineage and the increasing mRNA levels of proliferating cell nuclear antigen (pcna) indicated the proliferation of the cells in vitro. Transcript levels of myogenic marker genes such as pcna and myogenin increased during 5 days in culture of skeletal muscle explants, indicating that the muscle cells were proliferating and differentiating under ex vivo conditions. Transcript levels of the clock gene aryl hydrocarbon receptor nuclear translocator-like 2 (arntl2) in myosatellite cells showed no daily oscillation regardless of photoperiod manipulation. On the other hand, mRNA levels of the clock gene circadian locomotor output cycles kaput (clock) showed circadian rhythmicity in 5-day-old skeletal muscle explant under different photoperiod regimes. The expression of arntl2, cryptochrome2 (cry2), period 2a (per2a) and nuclear receptor subfamily 1, group D, member 1 was not rhythmic in muscle explants but photoperiod manipulation had a significant effect on mRNA levels of cry2 and per2a. Taken together, the lack of rhythmicity

  19. The Effects of Temperature, Hypoxia and Hypercapnia on the Metabolism of Atlantic Cod Gadus morhua

    DEFF Research Database (Denmark)

    Tirsgård, Bjørn

    into bio-energetic models used to predict survival, growth and reproduction rates and cod stock dynamics. Furthermore, due to the growing interest of the continuing global increase in atmospheric and oceanic CO2 levels (ICES, 2010), and the rapid expansion of fish farming in land-based recirculated...... degrees in the Øresund resulting in a change in the metabolism (Aertebjerg et al., 1998). Specially in the fragile early life stages optimizing the metabolism to either a low maintenance cost in cold water or increased metabolism and potential higher growth rate in warm water might be crucial and thus...... of all sizes MS was reduced by 30-35% at 2°C compared to at Topt whereas only larger fish experienced a decrease in MS at temperatures above 10°C. In conclusion, independent of cod size low water temperatures resulted in a decrease in MS whereas the reduction of MS at high temperatures was only evident...

  20. Pituitary gonadotropin and testicular gonadotropin receptor expression in Atlantic cod (Gadusmorhua L.) during the first reproductive season: Effects of photoperiod modulation.

    Science.gov (United States)

    de Almeida, Fernanda Ferreira Loureiro; Andersson, Eva; Mittelholzer, Christian; Karlsen, Orjan; Taranger, Geir Lasse; Schulz, Rüdiger W

    2011-08-01

    Pituitary mRNA levels of gonadotropin β-subunits and of their cognate receptors in the testis were studied during puberty in Atlantic cod under normal and experimental photoperiod conditions that suppressed, delayed or accelerated testis maturation. Results are discussed in context with changes in testicular histology and plasma androgen levels, considered as end points of gonadotropic regulation. Up-regulation of fshb was closely associated with the onset of puberty, decreased when spermatogenesis was completed and reached minimum levels after spawning. These results demonstrate, for the first time using an experimental approach, that activation of Fsh-dependent signaling is associated with spermatogonial proliferation and formation of spermatogenic cysts. Changes in fshr expression were less prominent and could be explained by changes in the cellular composition and RNA content of cod testis tissue. At more advanced stages of development (spermiogenesis, spermiation and spawning), lhb and, one month later, lhcgr transcript levels increased and reached peak values in spawning fish, in a positive feedback loop involving plasma androgens and Lh/Lhcgr-dependent signaling. This loop was broken by a loss of lhb expression at the end of the spawning season. Continuous light (LL) from summer solstice, ~8 months prior to spawning, suppressed the start of testis maturation and the changes in gonadotropin and receptor mRNA levels, while LL from winter solstice initially up-regulated lhb and lhcgr expression, before resulting in a precocious termination of the spawning season and low expression of all four genes. Our studies provide experimental evidence for a clear functional discrimination of cod gonadotropins.

  1. Molecular identification and transmission studies of X-cell parasites from Atlantic cod Gadus morhua (Gadiformes: Gadidae and the northern black flounder Pseudopleuronectes obscurus (Pleuronectiformes: Pleuronectidae

    Directory of Open Access Journals (Sweden)

    Watanabe K

    2011-02-01

    Full Text Available Abstract Background Epidermal pseudotumours from Hippoglossoides dubius and Acanthogobius flavimanus in Japan and gill lesions in Limanda limanda from the UK have been shown to be caused by phylogenetically related protozoan parasites, known collectively as X-cells. However, the phylogenetic position of the X-cell group is not well supported within any of the existing protozoan phyla and they are currently thought to be members of the Alveolata. Ultrastructural features of X-cells in fish pseudotumours are somewhat limited and no typical environmental stages, such as spores or flagellated cells, have been observed. The life cycles for these parasites have not been demonstrated and it remains unknown how transmission to a new host occurs. In the present study, pseudobranchial pseudotumours from Atlantic cod, Gadus morhua, in Iceland and epidermal pseudotumours from the northern black flounder, Pseudopleuronectes obscurus, in Japan were used in experimental transmission studies to establish whether direct transmission of the parasite is achievable. In addition, X-cells from Atlantic cod were sequenced to confirm whether they are phylogenetically related to other X-cells and epidermal pseudotumours from the northern black flounder were analysed to establish whether the same parasite is responsible for infecting different flatfish species in Japan. Results Phylogenetic analyses of small subunit ribosomal DNA (SSU rDNA sequence data from Atlantic cod X-cells show that they are a related parasite that occupies a basal position to the clade containing other X-cell parasites. The X-cell parasite causing epidermal pseudotumours in P. obscurus is the same parasite that causes pseudotumours in H. dubius. Direct, fish to fish, transmission of the X-cell parasites used in this study, via oral feeding or injection, was not achieved. Non-amoeboid X-cells are contained within discrete sac-like structures that are loosely attached to epidermal pseudotumours in

  2. Quantitative proteomics analysis reveals perturbation of lipid metabolic pathways in the liver of Atlantic cod (Gadus morhua) treated with PCB 153.

    Science.gov (United States)

    Yadetie, Fekadu; Oveland, Eystein; Døskeland, Anne; Berven, Frode; Goksøyr, Anders; Karlsen, Odd André

    2017-04-01

    PCB 153 is one of the most abundant PCB congeners detected in biological samples. It is a persistent compound that is still present in the environment despite the ban on production and use of PCBs in the late 1970s. It has strong tendencies to bioaccumulate and biomagnify in biota, and studies have suggested that it is an endocrine and metabolic disruptor. In order to study mechanisms of toxicity, we exposed Atlantic cod (Gadus morhua) to various doses of PCB 153 (0, 0.5, 2 and 8mg/kg body weight) for two weeks and examined the effects on expression of liver proteins using label-free quantitative proteomics. Label-free liquid chromatography-mass spectrometry analysis of the liver proteome resulted in the quantification of 1272 proteins, of which 78 proteins were differentially regulated in the PCB 153-treated dose groups compared to the control group. Functional enrichment analysis showed that pathways significantly affected are related to lipid metabolism, cytoskeletal remodeling, cell cycle and cell adhesion. Importantly, the main effects appear to be on lipid metabolism, with up-regulation of enzymes in the de novo fatty acid synthesis pathway, consistent with previous transcriptomics results. Increased plasma triglyceride levels were also observed in the PCB 153 treated fish, in agreement with the induction of the lipogenic genes and proteins. The results suggest that PCB 153 perturbs lipid metabolism in the Atlantic cod liver. Elevated levels of lipogenic enzymes and plasma triglycerides further suggest increased synthesis of fatty acids and triglycerides. Copyright © 2017 Elsevier B.V. All rights reserved.

  3. Bay-scale population structure in coastal Atlantic cod in Labrador and Newfoundland, Canada

    DEFF Research Database (Denmark)

    Ruzzante, D.E.; Wroblewski, J.S.; Taggart, C.T.;

    2000-01-01

    of population structure suggest that important barriers to gene flow exist among five components that include two inshore (Gilbert and Trinity Bay) and three offshore cod aggregations on the north-east Newfoundland Shelf and the Grand Bank. D-A and D-SW estimates of genetic distance that involve Gilbert Bay cod...... fishery collapse. Harvesting strategies for northern cod should recognize the existence of genetic diversity between inshore and offshore components as well as among coastal components. (C) 2000 The Fisheries Society of the British Isles...

  4. Sex differentiation in Atlantic cod (Gadus morhua L.: morphological and gene expression studies

    Directory of Open Access Journals (Sweden)

    Haugen Trine

    2012-06-01

    Full Text Available Abstract Background In differentiated gonochoristic species, a bipotential gonad develops into an ovary or testis during sex differentiation. Knowledge about this process is necessary to improve methods for masculinizing genetically female Atlantic cod for the subsequent purpose of producing all-female populations. Methods Gonads were examined histologically in juveniles from 14 to 39 mm total body length (TL. Number and size of germ cells were determined in a subset of the samples. Relevant genes were cloned, and mRNA levels determined by qPCR of amh, cyp19a1a; dax1 (nr0b2; shp (nr0b2a and sox9b in a mixed-sex and an all-female population ranging from 12–49 mm TL. Results Individuals between 14–20 mm TL could be separated in two subgroups based on gonad size and germ cell number. Ovarian cavity formation was observed in some individuals from 18–20 mm TL. The mixed sex population displayed bimodal expression patterns as regards cyp19a1a (starting at 12 mm TL and amh (starting at 20 mm TL mRNA levels. After approximately 30 mm TL, cyp19a1a and amh displayed a gradual increase in both sexes. No apparent, sex-dependent expression patterns were found for dax1, shp or sox9b transcripts. However, shp levels were high until the larvae reached around 35 mm TL and then dropped to low levels, while dax1 remained low until 35 mm TL, and then increased sharply. Conclusions The morphological sex differentiation in females commenced between 14–20 mm TL, and ovarian cavities were evident by 18–20 mm TL. Testis development occurred later, and was morphologically evident after 30 mm TL. This pattern was corroborated with sexually dimorphic expression patterns of cyp19a1a from 12–13 mm TL, and a male-specific increase in amh from 20 mm TL.

  5. Comparative visual ecophysiology of mid-Atlantic temperate reef fishes

    Directory of Open Access Journals (Sweden)

    Andrij Z. Horodysky

    2013-11-01

    The absolute light sensitivities, temporal properties, and spectral sensitivities of the visual systems of three mid-Atlantic temperate reef fishes (Atlantic spadefish [Ephippidae: Chaetodipterus faber], tautog [Labridae: Tautoga onitis], and black sea bass [Serranidae: Centropristis striata] were studied via electroretinography (ERG. Pelagic Atlantic spadefish exhibited higher temporal resolution but a narrower dynamic range than the two more demersal foragers. The higher luminous sensitivities of tautog and black sea bass were similar to other benthic and demersal coastal mid-Atlantic fishes. Flicker fusion frequency experiments revealed significant interspecific differences at maximum intensities that correlated with lifestyle and habitat. Spectral responses of the three species spanned 400–610 nm, with high likelihood of cone dichromacy providing the basis for color and contrast discrimination. Significant day-night differences in spectral responses were evident in spadefish and black sea bass but not tautog, a labrid with characteristic structure-associated nocturnal torpor. Atlantic spadefish responded to a wider range of wavelengths than did deeper-dwelling tautog or black sea bass. Collectively, these results suggest that temperate reef-associated fishes are well-adapted to their gradient of brighter to dimmer photoclimates, representative of their unique ecologies and life histories. Continuing anthropogenic degradation of water quality in coastal environments, at a pace faster than the evolution of visual systems, may however impede visual foraging and reproductive signaling in temperate reef fishes.

  6. Ciguatera fish poisoning in the Caribbean islands and Western Atlantic.

    Science.gov (United States)

    Pottier, I; Vernoux, J P; Lewis, R J

    2001-01-01

    Ciguatera fish poisoning (ciguatera), a common poisoning caused by fish ingestion, is reviewed in the Western Atlantic and the Caribbean waters. It is endemic from Florida coasts (northern limit) to Martinique Island (southern limit), with outbreaks occurring from time to time. In the Caribbean, ciguatera causes a polymorphic syndrome with gastrointestinal, cardiovascular, and neurological signs and symptoms. Neurological and muscular dysfunctions can be treated by intravenous injection of D-mannitol. The lipid-soluble toxins involved are ciguatoxins that are likely produced by the dinoflagellate Gambierdiscus toxicus. G. toxicus strains are endemic in the Caribbean Sea and in theWestern Atlantic. Although it is likely that blooms of G. toxicus are ingested by herbivorous fishes, they are not implicated in ciguatera in the Caribbean. Rather, large carnivores (barracudas, jacks, snappers, groupers), consumers of smaller benthic fish, are often involved in ciguatera. Fish toxicity depends on fishing area and depth, fish size and tissues, and climatic disturbances. Ciguatoxins have been isolated and purified from Caribbean fish species. The structure of two epimers, C-CTX-1 and C-CTX-2 from horse-eye jack, comprise 14 trans-fused ether-linked rings and a hemiketal in terminal ring. Caribbean ciguatoxins are mainly detected in the laboratory by chicken, mouse, mosquito, or cell bioassays, and by analytical HPLC/tandem mass spectrometry down to parts per billion (ppb). A ciguatera management plan that integrates epidemiology, treatment, and a simple method of detection is required to ensure the protection of consumers.

  7. Arctic warming will promote Atlantic-Pacific fish interchange

    DEFF Research Database (Denmark)

    Wisz, Mary; Broennimann, O.; Grønkjær, Peter

    2015-01-01

    Throughout much of the Quaternary Period, inhospitable environmental conditions above the Arctic Circle have been a formidable barrier separating most marine organisms in the North Atlantic from those in the North Pacific. Rapid warming has begun to lift this barrier, potentially facilitating...... to ecosystems that at present contribute 39% to global marine fish landings...

  8. Amino acid sequence of the cold-active alkaline phosphatase from Atlantic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Asgeirsson, Bjarni; Nielsen, Berit Noesgaard; Højrup, Peter

    2003-01-01

    sequencing by Edman degradation. The primary structure exhibits greatest similarity to human tissue non-specific AP (80%), and approximately 30% similarity to AP from Escherichia coli. The key residues required for catalysis are conserved in the cod AP, except for the third metal binding site, where cod AP......-linked glycosylation sites were found. The glycan structure was determined as complex biantennary in type with fucose and sialic acid attached, although a trace of complex tri-antennary structure was also observed. A three-dimensional model was obtained by homology modelling using the human placental AP scaffold. Cod...... APs. This may invoke greater movement in the structure that together with weaker subunit contacts leads to improved catalytic efficiency....

  9. Effect of sub-lethal exposure to ultraviolet radiation on the escape performance of Atlantic cod larvae (Gadus morhua.

    Directory of Open Access Journals (Sweden)

    Yuichi Fukunishi

    Full Text Available The amount of ultraviolet (UV radiation reaching the earth's surface has increased due to depletion of the ozone layer. Several studies have reported that UV radiation reduces survival of fish larvae. However, indirect and sub-lethal impacts of UV radiation on fish behavior have been given little consideration. We observed the escape performance of larval cod (24 dph, SL: 7.6±0.2 mm; 29 dph, SL: 8.2±0.3 mm that had been exposed to sub-lethal levels of UV radiation vs. unexposed controls. Two predators were used (in separate experiments: two-spotted goby (Gobiusculus flavescens; a suction predator and lion's mane jellyfish (Cyanea capillata; a "passive" ambush predator. Ten cod larvae were observed in the presence of a predator for 20 minutes using a digital video camera. Trials were replicated 4 times for goby and 5 times for jellyfish. Escape rate (total number of escapes/total number of attacks ×100, escape distance and the number of larvae remaining at the end of the experiment were measured. In the experiment with gobies, in the UV-treated larvae, both escape rate and escape distance (36%, 38±7.5 mm respectively were significantly lower than those of control larvae (75%, 69±4.7 mm respectively. There was a significant difference in survival as well (UV: 35%,63%. No apparent escape response was observed, and survival rate was not significantly different, between treatments (UV: 66%,74% in the experiment with jellyfish. We conclude that the effect and impact of exposure to sub-lethal levels of UV radiation on the escape performance of cod larvae depends on the type of predator. Our results also suggest that prediction of UV impacts on fish larvae based only on direct effects are underestimations.

  10. Hazard Analysis and identification of Critical Control Points of collagen extraction from cod by-products

    NARCIS (Netherlands)

    Aalberts, C.H.J.

    2004-01-01

    The aim of the European research project “UTILISATION AND STABILISATION OF BY-PRODUCTS FROM COD SPECIES” (QLK1-CT-2000-01017 QLRT-2001-02829) is to investigate whether collagen from fish by-products could serve as an important raw material in high quality food. Since Atlantic cod is a major commodit

  11. THE EFFECT OF HYPOXIA ON THE MAXIMUM MATABOLIC RATE AND SPECIFIC DYNAMIC ACTION IN ATLANTIC COD Gadus morhua

    DEFF Research Database (Denmark)

    Steffensen, John Fleng

    2010-01-01

    John Fleng Steffensen' and Anders Drud Jordan Aquaculture 2010 - San Diego - Physiological Insights Towards Improving Fish Culture. Hypoxia is an increasing problem in coastal near areas and estuaries. Hypoxia can also be a problem in aquaculture systems with a high degree of recirculating water...... and protein synthesis leading to the deposition and turnover of tissue components. Oxygen consumption of juvenile cod was measured with computerized intennittent respirometry at 10 0 C. A specially designed Plexiglas respirometer with a "chimney" in either end allowed feeding without disturbing and stressing...

  12. Correlations between hemoglobin type and temperature preference of juvenile Atlantic cod Gadus morhua

    DEFF Research Database (Denmark)

    Behrens, Jane W.; Gräns, Albin; Therkildsen, Nina Overgaard

    2012-01-01

    temperature (temperature span between 1st and 3rd quartile) was very similar between all 3 Hbl types with 3.2–3.5 °C. Considering the complexity of a trait like temperature preference, there are clearly many other factors besides HbI type that influence the thermal biology of cod, and therefore we also...

  13. Hierarchical modelling of temperature and habitat size effects on population dynamics of North Atlantic cod

    DEFF Research Database (Denmark)

    Mantzouni, Irene; Sørensen, Helle; O'Hara, Robert B.;

    2010-01-01

    and Beverton and Holt stock–recruitment (SR) models were extended by applying hierarchical methods, mixed-effects models, and Bayesian inference to incorporate the influence of these ecosystem factors on model parameters representing cod maximum reproductive rate and carrying capacity. We identified...

  14. Adjustments of molecular key components of branchial ion and pH regulation in Atlantic cod (Gadus morhua) in response to ocean acidification and warming.

    Science.gov (United States)

    Michael, Katharina; Kreiss, Cornelia M; Hu, Marian Y; Koschnick, Nils; Bickmeyer, Ulf; Dupont, Sam; Pörtner, Hans-O; Lucassen, Magnus

    2016-03-01

    Marine teleost fish sustain compensation of extracellular pH after exposure to hypercapnia by means of efficient ion and acid-base regulation. Elevated rates of ion and acid-base regulation under hypercapnia may be stimulated further by elevated temperature. Here, we characterized the regulation of transepithelial ion transporters (NKCC1, NBC1, SLC26A6, NHE1 and 2) and ATPases (Na(+)/K(+) ATPase and V-type H(+) ATPase) in gills of Atlantic cod (Gadus morhua) after 4 weeks of exposure to ambient and future PCO2 levels (550 μatm, 1200 μatm, 2200 μatm) at optimum (10 °C) and summer maximum temperature (18 °C), respectively. Gene expression of most branchial ion transporters revealed temperature- and dose-dependent responses to elevated PCO2. Transcriptional regulation resulted in stable protein expression at 10 °C, whereas expression of most transport proteins increased at medium PCO2 and 18 °C. mRNA and protein expression of distinct ion transport proteins were closely co-regulated, substantiating cellular functional relationships. Na(+)/K(+) ATPase capacities were PCO2 independent, but increased with acclimation temperature, whereas H(+) ATPase capacities were thermally compensated but decreased at medium PCO2 and 10 °C. When functional capacities of branchial ATPases were compared with mitochondrial F1Fo ATP-synthase strong correlations of F1Fo ATP-synthase and ATPase capacities generally indicate close coordination of branchial aerobic ATP demand and supply. Our data indicate physiological plasticity in the gills of cod to adjust to a warming, acidifying ocean within limits. In light of the interacting and non-linear, dose-dependent effects of both climate factors the role of these mechanisms in shaping resilience under climate change remains to be explored.

  15. Arctic warming will promote Atlantic-Pacific fish interchange

    Science.gov (United States)

    Wisz, M. S.; Broennimann, O.; Grønkjær, P.; Møller, P. R.; Olsen, S. M.; Swingedouw, D.; Hedeholm, R. B.; Nielsen, E. E.; Guisan, A.; Pellissier, L.

    2015-03-01

    Throughout much of the Quaternary Period, inhospitable environmental conditions above the Arctic Circle have been a formidable barrier separating most marine organisms in the North Atlantic from those in the North Pacific. Rapid warming has begun to lift this barrier, potentially facilitating the interchange of marine biota between the two seas. Here, we forecast the potential northward progression of 515 fish species following climate change, and report the rate of potential species interchange between the Atlantic and the Pacific via the Northwest Passage and the Northeast Passage. For this, we projected niche-based models under climate change scenarios and simulated the spread of species through the passages when climatic conditions became suitable. Results reveal a complex range of responses during this century, and accelerated interchange after 2050. By 2100 up to 41 species could enter the Pacific and 44 species could enter the Atlantic, via one or both passages. Consistent with historical and recent biodiversity interchanges, this exchange of fish species may trigger changes for biodiversity and food webs in the North Atlantic and North Pacific, with ecological and economic consequences to ecosystems that at present contribute 39% to global marine fish landings.

  16. Abundance and distribution of Arctic cod (Boreogadus saida) and other pelagic fishes over the U.S. Continental Shelf of the Northern Bering and Chukchi Seas

    Science.gov (United States)

    De Robertis, Alex; Taylor, Kevin; Wilson, Christopher D.; Farley, Edward V.

    2017-01-01

    We conducted acoustic-trawl (AT) surveys of the northern Bering and Chukchi Seas during ice-free periods in 2012 and 2013. The mixed species assemblages in the study area required refinement of standard AT survey methods, and adjustment of trawl catches for the effects of trawl selectivity. Sensitivity analyses indicate that the AT abundance estimates are relatively robust to the assumptions of the analysis. These surveys indicate that midwater fishes are dominated by age-0 Arctic cod (Boreogadus saida), age-0 saffron cod (Eleginus gracilis), capelin (Mallotus villosus), and Pacific herring (Clupea pallasii). In both years, age-0 Arctic cod were distributed principally ≥69.5 °N, age-0 saffron cod were abundant in coastal areas between 66.5 and 69.5 °N, and Pacific herring were distributed south of 67 °N. These three fishes exhibited consistent associations with temperature, salinity and bottom depth: e.g., age-0 Arctic cod were abundant at lower mean water column temperatures than saffron cod. In contrast, capelin were distributed throughout the study area, and were not consistently associated with environmental measures. There was a geographic trend in body length, with smaller Arctic cod, saffron cod and capelin in northern areas, but smaller herring in the south. Arctic cod, saffron cod, herring and capelin were all >2 times more abundant in 2013 than 2012. Sizeable populations of age-0 Arctic cod were observed in the northern Chukchi Sea, which suggests that this area is an important nursery ground. However, relatively few older Arctic cod were observed in this and other surveys of the area, which suggests that either overwinter mortality of age-0 Arctic cod is high, and/or these fish are not retained on the Chukchi shelf.

  17. Molecular evidence that only two opsin subfamilies, the blue light- (SWS2) and green light-sensitive (RH2), drive color vision in Atlantic cod (Gadus morhua)

    National Research Council Canada - National Science Library

    Valen, Ragnhild; Edvardsen, Rolf Brudvik; Søviknes, Anne Mette; Drivenes, Øyvind; Helvik, Jon Vidar

    2014-01-01

    ... spectra representing UV and red light. Furthermore, we find that Atlantic cod has duplicated paralogs of both blue-sensitive SWS2 and green-sensitive RH2 subfamilies, with members belonging to each subfamily linked in tandem within the genome...

  18. In vitro pH-Stat protein hydrolysis of feed ingredients for Atlantic cod, Gadus morhua. 2. In vitro protein digestibility of common and alternative feed ingredients

    NARCIS (Netherlands)

    Tibbetts, S.; Verreth, J.A.J.; Lall, S.P.

    2011-01-01

    Using enzyme fractions isolated from the pyloric caeca of farmed Atlantic cod, the in vitro degree of protein hydrolysis (DH) of numerous conventional and novel feed ingredients were measured by a closed-system pH-Stat assay. Regression equations describing the relationship between in vivo apparent

  19. Understanding the release efficiency of Atlantic cod (Gadus morhua) from trawls with a square mesh panel: effects of panel area, panel position, and stimulation of escape response

    DEFF Research Database (Denmark)

    Herrmann, Bent; Wienbeck, Harald; Karlsen, Junita Diana

    2015-01-01

    Based on size selectivity data for more than 25 000 cod (Gadus morhua) collected during experimental trawl fishing with six different codends, all of which included a square mesh panel,we investigated the effect on cod-release efficiency based on the size of the square mesh panel area, position...... of the square mesh panel, and stimulation of the escape response. Based on the results, we were able to explain why the BACOMAcodend, applied in the Baltic Sea cod directed trawl fishery, releases juvenile cod efficiently, whereas other designs, including a squaremesh panel with similar mesh size, are less...... efficient. Our main findings reveal that the release efficiency of the square mesh panel in the BACOMA codend depends largely on the overlap of the square mesh panel and the catch-accumulation zone in the codend, where cod do not have the option of just drifting further back in the trawl when proximate...

  20. Invasive lionfish drive Atlantic coral reef fish declines.

    Directory of Open Access Journals (Sweden)

    Stephanie J Green

    Full Text Available Indo-Pacific lionfish (Pterois volitans and P. miles have spread swiftly across the Western Atlantic, producing a marine predator invasion of unparalleled speed and magnitude. There is growing concern that lionfish will affect the structure and function of invaded marine ecosystems, however detrimental impacts on natural communities have yet to be measured. Here we document the response of native fish communities to predation by lionfish populations on nine coral reefs off New Providence Island, Bahamas. We assessed lionfish diet through stomach contents analysis, and quantified changes in fish biomass through visual surveys of lionfish and native fishes at the sites over time. Lionfish abundance increased rapidly between 2004 and 2010, by which time lionfish comprised nearly 40% of the total predator biomass in the system. The increase in lionfish abundance coincided with a 65% decline in the biomass of the lionfish's 42 Atlantic prey fishes in just two years. Without prompt action to control increasing lionfish populations, similar effects across the region may have long-term negative implications for the structure of Atlantic marine communities, as well as the societies and economies that depend on them.

  1. Infection dynamics of two renal myxozoans in hatchery reared fry and juvenile Atlantic cod Gadus morhua L.

    Science.gov (United States)

    Holzer, A S; Stewart, S; Tildesley, A; Wootten, R; Sommerville, C

    2010-09-01

    In order to study the infection dynamics of 2 renal myxozoans, Zschokkella hildae Auerbach, 1910 and Gadimyxa atlantica Køie, Karlsbakk and Nylund, 2007 in cultured Atlantic cod, Gadus morhua L. aged 3-19 months, a specific single-round PCR assay and a double-label in situ hybridization protocol were developed. The results demonstrated that the 2 myxozoans show spatial separation of their development with regard to spore formation inside the renal tubules versus the collecting ducts and ureters, as well as temporal separation with Z. hildae proliferating and developing spores only once the G. atlantica infection decreases, despite the presence of both myxozoans in the smallest fry studied. These results strongly suggest within-host competition of the 2 myxozoans with potential suppression of Z. hildae by G. atlantica until G. morhua acquires immunity against G. atlantica. The quantification of the G. atlantica infection inside the renal tubules before and after a 29-day experimental growth performance study using fry from hatcheries with differing filtration systems showed that the intensity of infection with G. atlantica seems to be controlled if prolonged exposure to the myxozoan transmission stages takes place from hatching onwards. Surprisingly, growth rates in the trial were inversely affected suggesting that G. atlantica does not negatively influence cod fry growth performance.

  2. ¹H, ¹³C and ¹⁵N resonance assignments and second structure information of Gad m 1: a β-parvalbumin allergen from Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Moraes, A H; Ackerbauer, D; Kostadinova, M; Bublin, M; Ferreira, F; Almeida, F C L; Breiteneder, H; Valente, A P

    2013-10-01

    Gad m 1 is the major allergen from Atlantic cod. It belongs to β-parvalbumin protein family and is characterized by the presence of two calcium-binding sites so called EF-hand motifs. β-Parvalbumins such as Gad m 1 are the most important fish allergens and their high cross-reactivity is the cause of the observed polysensitization to various fish species in allergic patients. Despite extensive efforts, the complete elucidation of β-parvalbumin-IgE complexes has not been achieved yet. Allergen structural studies are essential for the development of novel immunotherapy strategies, including vaccination with hypoallergenic derivatives and chimeric molecules. Here, we report for the first time the NMR study of a β-parvalbumin: Gad m 1. This report includes: (1)H, (13)C and (15)N resonance assignments of Gad m 1 as well as the second structure information based on the (13)C chemical shifts.

  3. Linking size and age at sexual maturation to body growth, productivity and recruitment of Atlantic cod stocks spanning the North Atlantic

    DEFF Research Database (Denmark)

    Köster, Fritz; Trippel, E.A.; Tomkiewicz, Jonna

    2013-01-01

    Sexual maturation patterns of 22 North Atlantic stocks of cod (Gadus morhua) were examined and related to geographical distribution area, ambient water temperature, growth and surplus production. Four patterns were identified, i.e. sexual maturation early in life at small size, early in life...... at large size, late in life at small size and lastly, late in life at large size. These maturation patterns were geographically clustered and associated with differences in growth and surplus production. Stocks maturing late in life at small size were characterised by slow growth and low surplus production...... (e.g. stocks in the Gulf of St. Lawrence, Labrador/Newfoundland). Stocks maturing early in life at large size exhibited high to intermediate growth and surplus production (e.g. Celtic Sea, North Sea). Stocks maturing late in life at large size had low to intermediate growth rates and surplus...

  4. Differential impacts of elevated CO2 and acidosis on the energy budget of gill and liver cells from Atlantic cod, Gadus morhua.

    Science.gov (United States)

    Stapp, L S; Kreiss, C M; Pörtner, H O; Lannig, G

    2015-09-01

    Ocean acidification impacts fish and other marine species through increased seawater PCO2 levels (hypercapnia). Knowledge of the physiological mechanisms mediating effects in various tissues of fish is incomplete. Here we tested the effects of extracellular hypercapnia and acidosis on energy metabolism of gill and liver cells of Atlantic cod. Exposure media mimicked blood conditions in vivo, either during normo- or hypercapnia and at control or acidic extracellular pH (pHe). We determined metabolic rate and energy expenditure for protein biosynthesis, Na(+)/K(+)-ATPase and H(+)-ATPase and considered nutrition status by measurements of metabolic rate and protein biosynthesis in media with and without free amino acids (FAA). Addition of FAA stimulated hepatic but not branchial oxygen consumption. Normo- and hypercapnic acidosis as well as hypercapnia at control pHe depressed metabolic stimulation of hepatocytes. In gill cells, acidosis depressed respiration independent of PCO2 and FAA levels. For both cell types, depressed respiration was not correlated with the same reduction in energy allocated to protein biosynthesis or Na(+)/K(+)-ATPase. Hepatic energy expenditure for protein synthesis and Na(+)/K(+)-ATPase was even elevated at acidic compared to control pHe suggesting increased costs for ion regulation and cellular reorganization. Hypercapnia at control pHe strongly reduced oxygen demand of branchial Na(+)/K(+)-ATPase with a similar trend for H(+)-ATPase. We conclude that extracellular acidosis triggers metabolic depression in gill and metabolically stimulated liver cells. Additionally, hypercapnia itself seems to limit capacities for metabolic usage of amino acids in liver cells while it decreases the use and costs of ion regulatory ATPases in gill cells.

  5. Extraction and characterisation of apatite- and tricalcium phosphate-based materials from cod fish bones

    Energy Technology Data Exchange (ETDEWEB)

    Piccirillo, C.; Silva, M.F. [CBQF/Escola Superior de Biotecnologia, Universidade Catolica Portuguesa, Porto (Portugal); Pullar, R.C. [Dept. Engenharia de Materiais e Ceramica/CICECO, Universidade de Aveiro, Aveiro (Portugal); Braga da Cruz, I. [CBQF/Escola Superior de Biotecnologia, Universidade Catolica Portuguesa, Porto (Portugal); WeDoTech, CiDEB/Escola Superior de Biotecnologia, Universidade Catolica Portuguesa, Porto (Portugal); Jorge, R. [WeDoTech, CiDEB/Escola Superior de Biotecnologia, Universidade Catolica Portuguesa, Porto (Portugal); Pintado, M.M.E. [CBQF/Escola Superior de Biotecnologia, Universidade Catolica Portuguesa, Porto (Portugal); Castro, P.M.L., E-mail: plcastro@porto.ucp.pt [CBQF/Escola Superior de Biotecnologia, Universidade Catolica Portuguesa, Porto (Portugal)

    2013-01-01

    Apatite- and tricalcium phosphate-based materials were produced from codfish bones, thus converting a waste by-product from the food industry into high added-valued compounds. The bones were annealed at temperatures between 900 and 1200 Degree-Sign C, giving a biphasic material of hydroxyapatite and tricalcium phosphate (Ca{sub 10}(PO{sub 4}){sub 6}(OH){sub 2} and {beta}-Ca(PO{sub 4}){sub 3}) with a molar proportion of 75:25, a material widely used in biomedical implants. The treatment of the bones in solution prior to their annealing changed the composition of the material. Single phase hydroxyapatite, chlorapatite (Ca{sub 10}(PO{sub 4}){sub 6}Cl{sub 2}) and fluorapatite (Ca{sub 10}(PO{sub 4}){sub 6}F{sub 2}) were obtained using CaCl{sub 2} and NaF solutions, respectively. The samples were analysed by several techniques (X-ray diffraction, infrared spectroscopy, scanning electron microscopy and differential thermal/thermogravimetric analysis) and by elemental analyses, to have a more complete understanding of the conversion process. Such compositional modifications have never been performed before for these materials of natural origin to tailor the relative concentrations of elements. This paper shows the great potential for the conversion of this by-product into highly valuable compounds for biomedical applications, using a simple and effective valorisation process. - Highlights: Black-Right-Pointing-Pointer Apatite and calcium phosphate compounds extraction from cod fish bones Black-Right-Pointing-Pointer Bone calcination: biphasic material hydroxyapatite-calcium phosphate production Black-Right-Pointing-Pointer Bone pre-treatments in solution change the material composition. Black-Right-Pointing-Pointer Single phase materials (hydroxy-, chloro- or fluoroapatite) are obtained. Black-Right-Pointing-Pointer Concentration of other elements (Na, F, Cl) suitable for biomedical applications.

  6. Ocean warming and acidification modulate energy budget and gill ion regulatory mechanisms in Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Kreiss, C M; Michael, K; Lucassen, M; Jutfelt, F; Motyka, R; Dupont, S; Pörtner, H-O

    2015-10-01

    Ocean warming and acidification are threatening marine ecosystems. In marine animals, acidification is thought to enhance ion regulatory costs and thereby baseline energy demand, while elevated temperature also increases baseline metabolic rate. Here we investigated standard metabolic rates (SMR) and plasma parameters of Atlantic cod (Gadus morhua) after 3-4 weeks of exposure to ambient and future PCO2 levels (550, 1200 and 2200 µatm) and at two temperatures (10, 18 °C). In vivo branchial ion regulatory costs were studied in isolated, perfused gill preparations. Animals reared at 18 °C responded to increasing CO2 by elevating SMR, in contrast to specimens at 10 °C. Isolated gills at 10 °C and elevated PCO2 (≥1200 µatm) displayed increased soft tissue mass, in parallel to increased gill oxygen demand, indicating an increased fraction of gill in whole animal energy budget. Altered gill size was not found at 18 °C, where a shift in the use of ion regulation mechanisms occurred towards enhanced Na(+)/H(+)-exchange and HCO3 (-) transport at high PCO2 (2200 µatm), paralleled by higher Na(+)/K(+)-ATPase activities. This shift did not affect total gill energy consumption leaving whole animal energy budget unaffected. Higher Na(+)/K(+)-ATPase activities in the warmth might have compensated for enhanced branchial permeability and led to reduced plasma Na(+) and/or Cl(-) concentrations and slightly lowered osmolalities seen at 18 °C and 550 or 2200 µatm PCO2 in vivo. Overall, the gill as a key ion regulation organ seems to be highly effective in supporting the resilience of cod to effects of ocean warming and acidification.

  7. Monitoring sodium chloride during cod fish desalting process by flow injection spectrometry and infrared spectroscopy

    OpenAIRE

    Galvis-Sánchez, Andrea C.; Ildikó V. Tóth; Portela, Ana; Delgadillo, Ivonne; Rangel,António O. S. S.

    2011-01-01

    In order to adapt to the market trends that are moving towards ready-to-use products cod !sh industry is including into their industrial operations as the desalting step. The desalting process is a high cost and time demanding operation. The optimization of the desalting process is of vital importance for the !sh industry in order to assure the homogeneity and predictable concentration of sodium chloride in the !nal hydrated cod !sh product. On the other hand, consumers are more a...

  8. Effect of twine diameter on fishing power of experimental gill nets used in Greenland waters

    DEFF Research Database (Denmark)

    Hovgård, Holger

    1996-01-01

    The relative fishing powers of experimental gill nets were estimated for shorthorn sculpin (Myoxocephalus scorpius), Greenland cod (Gadus ogac), and Atlantic cod (Gadus morhua). The results suggested that fishing power was negatively correlated to the ratio between twine diameter and mesh size....... Similar differences in fishing power could be inferred for American plaice (Hippoglossoides platessoides) where no mesh- size selection was evident....

  9. The fate of Lernaeocera branchialis (L.) (Crustacea; Copepoda) in Atlantic cod, Gadus morhua L.

    Science.gov (United States)

    Baily, J E; Smith, J L; Wootten, R; Sommerville, C

    2011-02-01

    Lernaeocera branchialis, a copepod crustacean parasite of gadoids, represents a potential threat to both wild and farmed cod, Gadus morhua. The pathological changes associated with the early stages of experimental infection have previously been reported in detail, and this article describes the lesions associated with later chronic stages of experimental infection. Chronic infection is characterised by extravascular granuloma formation and proliferation of fibrovascular tissue around intact and fragmented, degenerate parasites within both the gill arch and cardiac region. The majority of parasite granulomas are located within connective tissues of the gill arch or pericardium; however, low numbers are present within the wall of large vessels. The intraluminal parasites and thrombi of early stage infection are largely absent in these later lesions. We propose that organisation and incorporation of the parasite thrombus into the vessel wall with subsequent granuloma formation and extrusion into the surrounding connective tissue leads to the elimination of the parasite from the vascular system. Thus, rather than being a negative consequence of infection thrombosis is protective, allowing the host to survive the substantial initial vascular insult.

  10. Functional responses of North Atlantic fish eggs to increasing temperature

    DEFF Research Database (Denmark)

    Tsoukali, Stavroula; Visser, Andre; MacKenzie, Brian

    2016-01-01

    -days and survival of fish eggs from 32 populations of 17 species in the North Atlantic to different temperatures in order to determine potential consequences of global warming for these species. The response of development time exhibited a similar decreasing trend with respect to temperature across species....... The similar slopes of regression lines relating lntransformed development time and temperature indicate similar sensitivity to temperature changes. Across-species differences were mainly driven by intercept values, indicating up to 8- fold differences in development time at given temperature...

  11. Statistical analysis of North Atlantic right whale (Eubalaena glacialis) signal trains in Cape Cod Bay, spring 2012.

    Science.gov (United States)

    Urazghildiiev, Ildar R

    2014-11-01

    Statistical characteristics of signal trains produced by North Atlantic right whales (NARW) during the winter and early spring in Cape Cod Bay, MA are described. Data analysis was based on four days of acoustic recordings that were obtained with synchronized hydrophones. Based on temporal and geographical clustering of detected signals, 7264 NARW sounds were identified and associated with 559 signal trains. The detected signals were assigned to four classes of narrowband tonal calls--upcalls, downcalls, complex, and high frequency, and two classes of wideband sounds--gunshots and complex. Empirical distributions of the number of signals in trains, total duration of trains, the positions of NARW, and signal classes are presented. Results indicate that 68.9% of all signal trains consisted of 10 or fewer signals. Low and high frequency tonals that lacked wideband sounds formed 69.1% of trains; 5.0% of trains lacked tonals. Trains consisting of only upcalls comprised 44.2% of all detected trains. Because 18.3% of trains contained no upcalls, using detectors that identify all signal classes would improve right whale detection.

  12. Where does the cod come from? Panels of gene‐associated markers provide vastly improved origin assignment in Atlantic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Eg Nielsen, Einar; Hansen, Jakob Hemmer; Taylor, Martin

    2012-01-01

    ‐European variation in more than 1200 gene‐associated SNPs in cod and found that levels of differentiation for a subset of 132 SNPs was best explained by a model including directional selection. These high‐differentiation SNPs were used for designing “minimum panels with maximum power” for a number of case studies...

  13. High rates of glucose utilization in the gas gland of Atlantic cod (Gadus morhua) are supported by GLUT1 and HK1b.

    Science.gov (United States)

    Clow, Kathy A; Short, Connie E; Hall, Jennifer R; Gendron, Robert L; Paradis, Hélène; Ralhan, Ankur; Driedzic, William R

    2016-09-01

    The gas gland of physoclistous fish utilizes glucose to generate lactic acid that leads to the off-loading of oxygen from haemoglobin. This study addresses characteristics of the first two steps in glucose utilization in the gas gland of Atlantic cod (Gadus morhua). Glucose metabolism by isolated gas gland cells was 12- and 170-fold higher, respectively, than that in heart and red blood cells (RBCs) as determined by the production of (3)H2O from [2-(3)H]glucose. In the gas gland, essentially all of the glucose consumed was converted to lactate. Glucose uptake in the gas gland shows a very high dependence upon facilitated transport as evidenced by saturation of uptake of 2-deoxyglucose at a low extracellular concentration and a requirement for high levels of cytochalasin B for uptake inhibition despite the high efficacy of this treatment in heart and RBCs. Glucose transport is via glucose transporter 1 (GLUT1), which is localized to the glandular cells. GLUT1 western blot analysis from whole-tissue lysates displayed a band with a relative molecular mass of 52 kDa, consistent with the deduced amino acid sequence. Levels of 52 kDa GLUT1 in the gas gland were 2.3- and 33-fold higher, respectively, than those in heart and RBCs, respectively. Glucose phosphorylation is catalysed by hexokinase Ib (HKIb), a paralogue that cannot bind to the outer mitochondrial membrane. Transcript levels of HKIb in the gas gland were 52- and 57-fold more abundant, respectively, than those in heart and RBCs. It appears that high levels of GLUT1 protein and an unusual isoform of HKI are both critical for the high rates of glycolysis in gas gland cells. © 2016. Published by The Company of Biologists Ltd.

  14. Optimized conditions for primary culture of pituitary cells from the Atlantic cod (Gadus morhua). The importance of osmolality, pCO₂, and pH.

    Science.gov (United States)

    Hodne, Kjetil; von Krogh, Kristine; Weltzien, Finn-Arne; Sand, Olav; Haug, Trude M

    2012-09-01

    Protocols for primary cultures of teleost cells are commonly only moderately adjusted from similar protocols for mammalian cells, the main adjustment often being of temperature. Because aquatic habitats are in general colder than mammalian body temperatures and teleosts have gills in direct contact with water, pH and buffer capacity of blood and extracellular fluid are different in fish and mammals. Plasma osmolality is generally higher in marine teleosts than in mammals. Using Atlantic cod (Gadus morhua) as a model, we have optimized these physiological parameters to maintain primary pituitary cells in culture for an extended period without loosing key properties. L-15 medium with adjusted osmolality, adapted to low pCO(2) (3.8mm Hg) and temperature (12°C), and with pH 7.85, maintained the cells in a physiologically sounder state than traditional culture medium, significantly improving cell viability compared to the initial protocol. In the optimized culture medium, resting membrane potential and response to releasing hormone were stable for at least two weeks, and the proportion of cells firing action potentials during spawning season was about seven times higher than in the original culture medium. The cells were moderately more viable when the modified medium was supplemented with newborn calf serum or artificial serum substitute. Compared to serum-free L-15 medium, expression of key genes (lhb, fshb, and gnrhr2a) was better maintained in medium containing SSR, whereas NCS tended to decrease the expression level. Although serum-free medium is adequate for many applications, serum supplement may be preferable for experiments dependent on membrane integrity.

  15. 75 FR 76302 - Atlantic Highly Migratory Species; 2011 Commercial Fishing Season and Adaptive Management...

    Science.gov (United States)

    2010-12-08

    ... Species; 2011 Commercial Fishing Season and Adaptive Management Measures for the Atlantic Shark Fishery... currently affecting management of the shark fishery, including commercial landings that exceed the quotas... and 2010 Atlantic commercial shark fishing seasons. NMFS is taking this action to establish the...

  16. De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read.

    Science.gov (United States)

    Austin, Christopher M; Tan, Mun Hua; Harrisson, Katherine A; Lee, Yin Peng; Croft, Laurence J; Sunnucks, Paul; Pavlova, Alexandra; Gan, Han Ming

    2017-08-01

    One of the most iconic Australian fish is the Murray cod, Maccullochella peelii (Mitchell 1838), a freshwater species that can grow to ∼1.8 metres in length and live to age ≥48 years. The Murray cod is of a conservation concern as a result of strong population contractions, but it is also popular for recreational fishing and is of growing aquaculture interest. In this study, we report the whole genome sequence of the Murray cod to support ongoing population genetics, conservation, and management research, as well as to better understand the evolutionary ecology and history of the species. A draft Murray cod genome of 633 Mbp (N50 = 109 974bp; BUSCO and CEGMA completeness of 94.2% and 91.9%, respectively) with an estimated 148 Mbp of putative repetitive sequences was assembled from the combined sequencing data of 2 fish individuals with an identical maternal lineage; 47.2 Gb of Illumina HiSeq data and 804 Mb of Nanopore data were generated from the first individual while 23.2 Gb of Illumina MiSeq data were generated from the second individual. The inclusion of Nanopore reads for scaffolding followed by subsequent gap-closing using Illumina data led to a 29% reduction in the number of scaffolds and a 55% and 54% increase in the scaffold and contig N50, respectively. We also report the first transcriptome of Murray cod that was subsequently used to annotate the Murray cod genome, leading to the identification of 26 539 protein-coding genes. We present the whole genome of the Murray cod and anticipate this will be a catalyst for a range of genetic, genomic, and phylogenetic studies of the Murray cod and more generally other fish species of the Percichthydae family. © The Authors 2017. Published by Oxford University Press.

  17. Paternal effects on early life history traits in Northwest Atlantic cod, Gadus morhua

    DEFF Research Database (Denmark)

    Kroll, M.-M.; Peck, M.A.; Butts, Ian A.E.

    2013-01-01

    and survival. In marine fish, rates of natural mortality are highest during early life and are negatively correlated with rates of growth and body size. In these early life stages (eggs, larvae, young juveniles) subtle differences in mortality can cause large differences in recruitment and year-class success...... this 12 males and two females were crossed using a full-factorial breeding design. Paternity had a strong influence on fertilization success, hatching success, cumulative embryonic mortality, larval standard length, eye diameter, yolk-sac area, and cumulative larval mortality. Female 1 showed an overall...

  18. Fishing gear-induced skin ulcerations in Baltic cod, Gadus morhua L

    DEFF Research Database (Denmark)

    Mellergaard, Stig; Bagge, O.

    1998-01-01

    In 1982 a high prevalence of skin ulcerations was observed in Baltic cod in the vicinity of the Danish island of Bornholm. In March the prevalence varied from G to 13%, and in May it had increased to between 26 and 48%. The ulcerations had a sequential development. The initial stage appeared as s...

  19. Eel, cod and seatrout harvest in Danish recreational fishing during 2011

    DEFF Research Database (Denmark)

    Sparrevohn, Claus Reedtz; Storr-Paulsen, Marie

    , it was estimated that 80 t [Relative standard error (RSE)=6%] eel, close to 1,300 t (RSE=5 %) cod and 400 t (RSE=5 %) seatrout (including freshwater catches) was harvested in the recreational fishery. Eel is almost exclusively taken in the passive gear fykenet fishery and seatrout was mainly caught by anglers...

  20. Fathers modify thermal reaction norms for hatching success in Atlantic cod, Gadus morhua

    DEFF Research Database (Denmark)

    Dahlke, Flemming T.; Politis, Sebastian Nikitas; Butts, Ian

    2016-01-01

    survival among half-sibling families and temperature treatments was observed during blastula and gastrulation stages (until 100% epiboly), while almost no mortality occurred during subsequent development and throughout the hatching period. The observed magnitude of genetic variation underlying thermal......Climate-driven warming is altering marine ecosystems at an unprecedented rate and evolutionary adaptation may represent the last resort for many ectothermic organisms to avoid local extinction. The first step to elucidate the potential for adaptation to unfavorable thermal conditions is to assess...... the degree of genotype-based variation in thermal reaction norms of vital fitness traits. Marine broadcast spawning fishes experience extremely high rates ofmortality during early life stages. Paternally derived (genetic) variation underlying offspring fitness in adverse environmental conditions may...

  1. Genomic signatures of local directional selection in a high gene flow marine organism, the Atlantic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Eg Nielsen, Einar; Hansen, Jakob Hemmer; Poulsen, Nina Aagaard;

    2009-01-01

    Background: Marine fishes have been shown to display low levels of genetic structuring and associated high levels of gene flow, suggesting shallow evolutionary trajectories and, possibly, limited or lacking adaptive divergence among local populations. We investigated variation in 98 gene...... selection in local demes, or closely linked to loci under selection. Likewise, on a regional south/north transect of central and eastern Atlantic populations, seven loci displayed strongly elevated levels of genetic differentiation. Selection patterns among populations appeared to be relatively widespread...... archived otoliths from a Faeroese population demonstrated stability of the intra-population variation over 24 years. An exploratory landscape genetic analysis was used to elucidate potential effects of the most likely environmental factors responsible for the signatures of local adaptation. We found...

  2. Lost fishing gear and litter at Gorringe Bank (NE Atlantic)

    Science.gov (United States)

    Vieira, Rui P.; Raposo, Isabel P.; Sobral, Paula; Gonçalves, Jorge M. S.; Bell, Katherine L. C.; Cunha, Marina R.

    2015-06-01

    Studies concerning marine litter have received great attention over the last several years by the scientific community mainly due to their ecological and economic impacts in marine ecosystems, from coastal waters to the deep ocean seafloor. The distribution, type and abundance of marine litter in Ormonde and Gettysburg, the two seamounts of Gorringe Bank, were analyzed from photo and video imagery obtained during ROV-based surveys carried out at 60-3015 m depths during the E/V Nautilus cruise NA017. Located approximately 125 nm southwest of Portugal, Gorringe Bank lays at the crossroad between the Atlantic and the Mediterranean and is therefore characterized by an intense maritime traffic and fishing activities. The high frequency of lost or discarded fishing gear, such as cables, longlines and nets, observed on Gorringe Bank suggests an origin mostly from fishing activities, with a clear turnover in the type of litter (mostly metal, glass and to a much lesser extent, plastic) with increasing depth. Litter was more abundant at the summit of Gorringe Bank (ca. 4 items·km- 1), decreasing to less than 1 item·km- 1 at the flanks and to ca. 2 items·km- 1 at greater depths. Nevertheless, litter abundance appeared to be lower than in continental margin areas. The results presented herein are a contribution to support further actions for the conservation of vulnerable habitats on Gorringe Bank so that they can continue contributing to fishery productivity in the surrounding region.

  3. Learning from ‘apparent consensus’ in TAC disputes: Exploring knowledge overlaps in LEK and genetic categorization of Atlantic cod

    DEFF Research Database (Denmark)

    Hedeholm, R. B.; Jacobsen, R. B.; Eg Nielsen, Einar

    2016-01-01

    been observing both inshore and offshore cod in the Nuuk fiord system. Fisher interviews were conducted in order to understand the construction as well as the content of this specific local ecological knowledge. Furthermore, fishers were invited to assign cod from their catches into categories based...

  4. Mathematical models for the trimethylamine (TMA) formation on packed cod fish fillets at different temperatures

    NARCIS (Netherlands)

    Heising, J.K.; Boekel, van M.A.J.S.; Dekker, M.

    2014-01-01

    The microbial formation of trimethylamine (TMA) can be used as a quality indicator compound to predict the freshness of fish during its shelf life. In a supply chain with fluctuating temperatures, mathematical models will be valuable tools to simulate this formation as a function of temperature and

  5. Multifrequency analyses of fish distributions in the northwest Atlantic

    Science.gov (United States)

    Jech, J. Michael

    2004-05-01

    Routine acoustical surveys for estimating Atlantic herring (Clupea harengus) population abundance have been conducted on Georges Bank during the autumn spawning season from 1998 to present. Acoustical data are collected with a Simrad EK500 scientific echo sounder operating at 12 or 18, 38, and 120 kHz, and split-beam (the 12-kHz system is a single beam) transducers. Biological measurements and verification of acoustical scatterers are obtained with a pelagic trawl. Acoustical data are evaluated (scrutinized) manually to remove noise, faulty bottom detections, and to classify acoustical backscattering to species. Species classification is currently subjective, and is based on the experience of the scientists and trawl catches. Objective species classification and automated fish density and abundance estimates are an obvious goal for fisheries surveys using advanced technologies. Classification methods using relationships among frequency-dependent volume backscattering strengths, such as presence-absence and combination-permutation, are described and presented. Results indicate that while classification using these methods and acoustical information alone is not robust, these methods highlight backscattering patterns within aggregations and have the potential to characterize backscattering patterns observed in fisheries acoustics data. [Work supported by NOAA Fisheries and ONR.

  6. Age-structure-dependent recruitment: a meta-analysis applied to Northeast Atlantic fish stocks

    NARCIS (Netherlands)

    Brunel, T.P.A.

    2010-01-01

    Exploitation alters the age structure of fish stocks. Several stock-specific studies have suggested that changes in the age structure might have consequences for subsequent recruitment, but the evidence is not universal. To investigate how common such effects are among 39 Northeast Atlantic fish sto

  7. Heat-shock responsive genes identified and validated in Atlantic cod (Gadus morhua liver, head kidney and skeletal muscle using genomic techniques

    Directory of Open Access Journals (Sweden)

    Kimball Jennifer

    2010-01-01

    Full Text Available Abstract Background Daily and seasonal changes in temperature are challenges that fish within aquaculture settings cannot completely avoid, and are known to elicit complex organismal and cellular stress responses. We conducted a large-scale gene discovery and transcript expression study in order to better understand the genes that are potentially involved in the physiological and cellular aspects of stress caused by heat-shock. We used suppression subtractive hybridization (SSH cDNA library construction and characterization to identify transcripts that were dysregulated by heat-shock in liver, skeletal muscle and head kidney of Atlantic cod. These tissues were selected due to their roles in metabolic regulation, locomotion and growth, and immune function, respectively. Fish were exposed for 3 hours to an 8°C elevation in temperature, and then allowed to recover for 24 hours at the original temperature (i.e. 10°C. Tissue samples obtained before heat-shock (BHS, at the cessation of heat-shock (CS, and 3, 12, and 24 hours after the cessation of heat-shock (ACS, were used for reciprocal SSH library construction and quantitative reverse transcription - polymerase chain reaction (QPCR analysis of gene expression using samples from a group that was transferred but not heat-shocked (CT as controls. Results We sequenced and characterized 4394 ESTs (1524 from liver, 1451 from head kidney and 1419 from skeletal muscle from three "forward subtracted" libraries (enriched for genes up-regulated by heat-shock and 1586 from the liver "reverse subtracted" library (enriched for genes down-regulated by heat-shock, for a total of 5980 ESTs. Several cDNAs encoding putative chaperones belonging to the heat-shock protein (HSP family were found in these libraries, and "protein folding" was among the gene ontology (GO terms with the highest proportion in the libraries. QPCR analysis of HSP90α and HSP70-1 (synonym: HSPA1A mRNA expression showed significant up

  8. Spatial distribution of fishes in a Northwest Atlantic ecosystem in relation to risk of predation by a marine mammal.

    Science.gov (United States)

    Swain, Douglas P; Benoît, Hugues P; Hammill, Mike O

    2015-09-01

    1. Numerous studies have shown that, at spatial scales of metres to several kilometres, animals balance the trade-off between foraging success and predation mortality by increasing their use of safer but less profitable habitats as predation risk increases. However, it is less clear whether prey respond similarly at the larger spatiotemporal scales of many ecosystems. 2. We determine whether this behaviour is evident in a large marine ecosystem, the southern Gulf of St. Lawrence (sGSL, 75 000 km(2) ) over a 42-year period. This ecosystem is characterized by a recent increase in the abundance of a large marine predator, the grey seal (Halichoerus grypus Fabricius), by more than an order of magnitude. 3. We compared changes in spatial distribution over the 1971-2012 period between important prey of grey seals (Atlantic cod, Gadus morhua L.; white hake, Urophycis tenuis Mitchill; and thorny skate, Amblyraja radiata Donovan) and non-prey fishes. 4. Distribution was modelled using generalized additive models incorporating spatially variable effects of predation risk, density dependence and water temperature. Distributions of cod, hake and skate were strongly related to risk of predation by seals, with distribution shifting into lower risk areas as predation risk increased. Non-prey species did not show similar changes in habitat use. Spatial variation in fish condition suggests that these low-risk areas are also less profitable for cod and skate in terms of food availability. The effects of density dependence and water temperature were also important in models, but did not account for the changes in habitat use as the risk of predation increased. 5. These results indicate that these fish are able to assess and respond to spatial variation in predation risk at very large spatial scales. They also suggest that non-consumptive 'risk' effects may be an important component of the declines in productivity of seal prey in this ecosystem, and of the indirect effects at lower

  9. Preferred temperature of juvenile Atlantic cod Gadus morhua with different haemoglobin genotypes at normoxia and moderate hypoxia

    DEFF Research Database (Denmark)

    Petersen, Maria Faldborg; Steffensen, John Fleng

    2003-01-01

    in northern regions, and the HbI(1) allele dominant in warmer areas. To determine if temperature is a selective parameter in the distribution of the haemoglobin types, the preferred temperature of the homozygous genotypes HbI-1 and HbI-2 was measured. We found that HbI-2 cod preferred a temperature of 8...

  10. The third serine proteinase with chymotrypsin specificity isolated from Atlantic cod (Gadus morhua) is a type-II elastase

    DEFF Research Database (Denmark)

    Asgeirsson, B; Leth-Larsen, Rikke; Thórólfsson, M;

    1998-01-01

    efficiency of elastase C. The effects of several inhibitors on cod elastase C were identical to effects on chymotrypsins variants A and B, but dissimilar when compared with porcine pancreatic elastase. On the basis of the specificity and amino acid sequence, we conclude that the enzyme under study is most...

  11. Northeast Regional Cod Tagging Program

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Scientific justification: Canadian and US stock assessments for Atlantic cod indicate considerable fluctuation in stock abundance and recruitment over the last 20...

  12. Molecular Evidence that Only Two Opsin Subfamilies, the Blue Light- (SWS2) and Green Light-Sensitive (RH2), Drive Color Vision in Atlantic Cod (Gadus morhua): e115436

    National Research Council Canada - National Science Library

    Ragnhild Valen; Rolf Brudvik Edvardsen; Anne Mette Søviknes; Øyvind Drivenes; Jon Vidar Helvik

    2014-01-01

    ... spectra representing UV and red light. Furthermore, we find that Atlantic cod has duplicated paralogs of both blue-sensitive SWS2 and green-sensitive RH2 subfamilies, with members belonging to each subfamily linked in tandem within the genome...

  13. Cortisol levels and expression of stress- and apoptotic-related genes in the embryos of Atlantic cod, Gadus morhua following exposure to air

    DEFF Research Database (Denmark)

    Marlowe, Christopher; Caipang, A.; Fagutao, Ferdinand F.;

    2015-01-01

    Embryos (morula stage) of Atlantic cod, Gadus morhua L., were collected and subjected to air exposure for 2 min. followed by recovery at ambient conditions in the rearing container. Total immunoreactive cortisol and transcription of selected stress- and apoptosis-related genes of the embryos were...... determined before the application of the stressor and at 0.5, 1 and 24 h post-exposure. There was no significant difference in the total cortisol levels of the fertilized eggs before and after handling stress. There was high expression level of hsp70 and sod before application of the stressor...... as a consequence of air exposure at a time when cortisol is not fully active...

  14. Pre-digestion of dietary lipids has only minor effects on absorption, retention and metabolism in larval stages of Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Hamre, K; Lukram, I M; Rønnestad, I; Nordgreen, A; Saele, O

    2011-03-01

    The hypothesis of the present study was that cod larvae have a limitation in lipid digestion, and that absorption of lipids would increase by pre-hydrolysation. The diets used were designed to contain 15% lipid, of which 40% was phosphatidylcholine (PC) and 60 % was TAG. Cod larvae (40d post hatch (dph)) were fed a single meal where either PC or TAG was radioactively labelled, and the labelled PC or TAG was either intact or hydrolysed (pre-digested). The larvae were then incubated individually in chambers with collection of CO2 for 10 h. The following fractions were analysed for radioactivity: the incubation water (evacuated feed); the intestine; the body; the CO2 trap. The larvae ate a 16-29 μg diet, equivalent to 3·4-5·2 % of dry body weight. In the whole population, 0-16% of the lipid was evacuated. The larvae that had eaten less than 1·9-2·7 μg lipid absorbed close to 100% of the lipid, absorption being defined conservatively as the amount contained in the carcass and CO2, excluding the intestinal tissue. In these larvae, approximately 100 % of the absorbed lipid was also catabolised. In the larvae that ingested more than 1·9-2·7 μg lipid, there was a linear reduction in lipid absorption to a minimum of 55% at the highest lipid intakes parallel to an increasing retention of lipids in the carcass. There were only minor differences in digestion, absorption, retention and metabolism of lipids between the larvae fed the different diets, and the larvae tended to retain lipid classes as they were present in the feed. The study shows that 40-dph Atlantic cod larvae have an efficient utilisation of dietary lipids supplied as intact PC and TAG.

  15. Combination of genetics and spatial modelling highlights the sensitivity of cod (Gadus morhua) population diversity in the North Sea to distributions of fishing

    DEFF Research Database (Denmark)

    Heath, Michael R.; Culling, Mark A.; Crozier, Walter W.

    2014-01-01

    Conserving genetic diversity in animal populations is important for sustaining their ability to respond to environmental change. However, the “between-population” component of genetic diversity (biocomplexity) is threatened in many exploited populations, particularly marine fish, where harvest...... North Sea (Viking) unit by the more widespread (Dogger) unit, and its premature extinction under some spatial patterns of fishing. Fishery catch limits for cod are set at the scale of the whole North Sea without regard to such subpopulation dynamics. Our model offers a method to quantify adjustments...

  16. 76 FR 78245 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery...

    Science.gov (United States)

    2011-12-16

    ... for the Gulf Council's Red Drum, Reef Fish, Shrimp, and Coral and Coral Reefs FMPs (Generic ACL..., and South Atlantic; Gulf of Mexico Reef Fish Fishery; South Atlantic Snapper-Grouper Fishery AGENCY... (Secretary) under section 304(f) of the Magnuson-Stevens Fishery Conservation and Management Act...

  17. Large effective population size and temporal genetic stability in Atlantic cod (Gadus morhua) in the southern Gulf of St. Lawrence

    DEFF Research Database (Denmark)

    Therkildsen, Nina Overgaard; Eg Nielsen, Einar; Swain, Douglas P.

    2010-01-01

    Worldwide, many commercial fish stocks have experienced dramatic declines due to overfishing. Such fisheries-induced population reductions could potentially erode the genetic diversity of marine fish populations. Based on analyses of DNA extracted from archived and contemporary samples, this paper...

  18. Large effective population size and temporal genetic stability in Atlantic cod (Gadus morhua) in the southern Gulf of St. Lawrence

    DEFF Research Database (Denmark)

    Therkildsen, Nina Overgaard; Eg Nielsen, Einar; Swain, Douglas P.

    2010-01-01

    Worldwide, many commercial fish stocks have experienced dramatic declines due to overfishing. Such fisheries-induced population reductions could potentially erode the genetic diversity of marine fish populations. Based on analyses of DNA extracted from archived and contemporary samples, this paper...

  19. Changes in physiological responses of an Antarctic fish, the emerald rock cod (Trematomus bernacchii), following exposure to polybrominated diphenyl ethers (PBDEs).

    Science.gov (United States)

    Ghosh, Ruma; Lokman, P Mark; Lamare, Miles D; Metcalf, Victoria J; Burritt, David J; Davison, William; Hageman, Kimberly J

    2013-03-15

    Although polybrominated diphenyl ethers (PBDEs) have the ability to undergo long-range atmospheric transport to remote ecosystems like Antarctica, a recent study found evidence for a local source within the Antarctic. PBDEs from sewage treatment outfalls of McMurdo Station and Scott Base on Ross Island have been attributed to the high concentrations measured in emerald rock cod (Trematomus bernacchii). The potential impact of PBDEs on Antarctic fish physiology is unknown and therefore, the aim of this study was to obtain a greater understanding of physiological responses of emerald rock cod for assessing changes in ecosystem quality. A PBDE mixture (ΣPBDE 8 congeners) was administered fortnightly over 42 days and physiological changes were observed throughout this period and for a further 14 days thereafter. Changes in liver composition, molecular level changes and enzyme activities of selected detoxification-mediated and antioxidant defence markers were measured. Changes in total lipid, lipid peroxide and protein carbonyl concentrations in emerald rock cod liver were consistent with increases in nucleus surface area in the PBDE-treated groups, suggesting alterations in cellular function. Changes in the activities of selected antioxidant enzymes indirectly indicated oxidative stress, possibly resulting in the changes in liver composition. Additionally, glutathione-S-transferase (GST) activity reached its peak faster than that of ethoxyresorufin-O-deethylase (EROD), suggesting that during the early response to PBDE exposures there could be a greater involvement of GST-mediated detoxification. Thus, for at least the species examined here, protein carbonyl and lipid peroxides were useful and informative biomarkers for cellular level responses following PBDE-related exposure. Furthermore, our findings suggest that emerald rock cod exposed to PBDEs develop oxidative stress - a condition with potential consequences for fish growth, health and reproduction.

  20. Effects of reproduction on growth and survival in Atlantic cod, Gadus morhua, assessed by comparison to triploids

    DEFF Research Database (Denmark)

    Trippel, Edward A.; Butts, Ian; Babin, Amanda;

    2014-01-01

    . years, but there was at age 3. years. At age 2. years, low investment in reproduction likely accounted for the lack of a somatic cost of reproduction, whereas at age 4 the absence was associated with heightened growth post-spawning enabling mature fish to catch up to immature fish. At age 3......, compensatory growth during post-spawning was below that of immature fish. Survival represented a significant component of the cost of reproduction. Laboratory experiments examining the cost of reproduction have traditionally focused on shorter time periods, commonly spanning several months, whereas ours...... spanned nearly four years. Although previously done for bivalves, to our knowledge, this is the first time the cost of reproduction has been evaluated using triploid fish as a comparator...

  1. Regional warming chnages fish species richness in the eastern North Atlantic Ocean

    NARCIS (Netherlands)

    Hofstede, ter R.; Hiddink, J.G.; Rijnsdorp, A.D.

    2010-01-01

    Regional warming causes changes in local communities due to species extinctions and latitudinal range shifts. We show that the species richness of fish in 3 regional seas in the eastern North Atlantic Ocean has changed over time (1997 to 2008), and we relate this to higher water temperatures and the

  2. Forecasting fish biomasses, densities, productions, and bioaccumulation potentials of Mid-Atlantic wadeable streams

    Science.gov (United States)

    Regional fishery conditions of Mid-Atlantic wadeable streams in the eastern United States are estimated using the BASS bioaccumulation and fish community model and data collected by the U.S. Environmental Protection Agency's Environmental Monitoring and Assessment Program (EMAP)....

  3. Forecasting fish biomasses, densities, productions, and bioaccumulation potentials of Mid-Atlantic wadeable streams

    Science.gov (United States)

    Regional fishery conditions of Mid-Atlantic wadeable streams in the eastern United States are estimated using the BASS bioaccumulation and fish community model and data collected by the U.S. Environmental Protection Agency's Environmental Monitoring and Assessment Program (EMAP)....

  4. Microgeographical population structure and adaptation in Atlantic cod Gadus morhua: spatio-temporal insights from gene-associated DNA markers

    DEFF Research Database (Denmark)

    Poulsen, Nina Aagaard; Hemmer-Hansen, Jakob; Loeschcke, V.;

    2011-01-01

    Recent technical advances have stimulated studies on spatial scales of adaptive genetic variation in marine fishes. However, very few studies have combined spatial and temporal sampling to investigate adaptive genetic structuring at local and microgeographical scales, i.e. scales at which neutral...

  5. Reconstructing historical stock development of Atlantic cod (Gadus morhua) in the eastern Baltic Sea before the beginning of intensive exploitation

    DEFF Research Database (Denmark)

    Eero, Margit; Köster, Fritz; MacKenzie, Brian

    2008-01-01

    mortality before the 1940s was below 0.2, but reached moderate levels during the Second World War. The stock size before the war may be considered as a reference level of biomass at low fishing impact, providing important information for the management of fisheries and the Baltic ecosystem....

  6. Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua: Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs.

    Directory of Open Access Journals (Sweden)

    Rune Andreassen

    Full Text Available Atlantic cod (Gadus morhua is among the economically most important species in the northern Atlantic Ocean and a model species for studying development of the immune system in vertebrates. MicroRNAs (miRNAs are an abundant class of small RNA molecules that regulate fundamental biological processes at the post-transcriptional level. Detailed knowledge about a species miRNA repertoire is necessary to study how the miRNA transcriptome modulate gene expression. We have therefore discovered and characterized mature miRNAs and their corresponding miRNA genes in Atlantic cod. We have also performed a validation study to identify suitable reference genes for RT-qPCR analysis of miRNA expression in Atlantic cod. Finally, we utilized the newly characterized miRNA repertoire and the dedicated RT-qPCR method to reveal miRNAs that are highly expressed in certain organs.The discovery analysis revealed 490 mature miRNAs (401 unique sequences along with precursor sequences and genomic location of the miRNA genes. Twenty six of these were novel miRNA genes. Validation studies ranked gmo-miR-17-1-5p or the two-gene combination gmo-miR25-3p and gmo-miR210-5p as most suitable qPCR reference genes. Analysis by RT-qPCR revealed 45 miRNAs with significantly higher expression in tissues from one or a few organs. Comparisons to other vertebrates indicate that some of these miRNAs may regulate processes like growth, lipid metabolism, immune response to microbial infections and scar damage repair. Three teleost-specific and three novel Atlantic cod miRNAs were among the differentially expressed miRNAs.The number of known mature miRNAs was considerably increased by our identification of miRNAs and miRNA genes in Atlantic cod. This will benefit further functional studies of miRNA expression using deep sequencing methods. The validation study showed that stable miRNAs are suitable reference genes for RT-qPCR analysis of miRNA expression. Applying RT-qPCR we have identified

  7. Abolition of reflex bradycardia by cardiac vagotomy has no effect on the regulation of oxygen uptake by Atlantic cod in progressive hypoxia

    DEFF Research Database (Denmark)

    McKenzie, David; Skov, Peter Vilhelm; Taylor, E.W.T.

    2009-01-01

    -operated cod (mean +/- s.e.m., n=9). Sham-operated cod exhibited transient profound bradycardia following oxygen chemoreceptor stimulation by bolus injection of sodium cyanide into the buccal cavity (2 mg in 2 ml seawater), but this cardiac chemoreflex was abolished in denervated cod. Both groups, however...

  8. 77 FR 72762 - Atlantic Surfclam and Ocean Quahog Fisheries; 2013 Fishing Quotas for Atlantic Surfclams and...

    Science.gov (United States)

    2012-12-06

    ... Atlantic surfclam and ocean quahog fisheries for 2013 will remain status quo. Regulations governing these... INFORMATION CONTACT: Jason Berthiaume, Fishery Management Specialist, (978) 281-9177; fax (978) 281-9135. SUPPLEMENTARY INFORMATION: Section 648.72(c) of the regulations implementing the fishery management plan...

  9. Community structure of shallow rocky shore fish in a tropical bay of the southwestern Atlantic

    Directory of Open Access Journals (Sweden)

    Camilo Moitinho Ferreira

    2015-12-01

    Full Text Available Abstract Southwestern Atlantic Ocean rocky shores sustain important reef fish communities. However, those communities in tropical regions are not well understood, especially in Brazil. In this present article we assess community parameters of reef fishes such as composition, trophic organization and their relationships with physical and biological factors on four tropical rocky shores in Todos os Santos Bay, southwestern Atlantic. During six months, a total of 80 visual censuses were performed, in which 3,582 fish belonging to 76 species were recorded. Territorial herbivorous fish and turf algae were dominant at all the sites. The spatial variability of fish community structure was related to the benthic cover composition and depth. The high abundance of territorial herbivores and mobile invertebrate feeders could be associated with high levels of turf cover, low wave exposure and shallow waters. Moreover, this fact could be a consequence of the low density of roving herbivores and large carnivores probably due to the pressure of intense fishing activity. Thus complementary studies are needed to evaluate the actual conservation status of these rocky shore reefs, singularly located habitats connecting inner and outer reefs in Todos os Santos Bay.

  10. Occurrence of Nematodes of the Genus Anisakis in Mediterranean and Atlantic Fish Marketed in Sardinia

    Science.gov (United States)

    Casti, Daniele; Scarano, Christian; Piras, Maria Cristina; Merella, Paolo; Muglia, Sonia; Piras, Francesca; Garippa, Giovanni; Spanu, Carlo; De Santis, Enrico Pietro Luigi

    2017-01-01

    Anisakiasis is a gastrointestinal fish-borne zoonosis caused by the ingestion of third stage larvae of the genus Anisakis. Between January and December 2013, 1112 specimens of four commercial fish species (Engraulis encrasicolus, Merluccius merluccius, Scomber colias and Trachurus mediterraneus) marketed in Sardinia (Italy) were examined for Anisakis sp. The overall prevalence of Anisakis spp larvae was 39.9%, all morphologically identified as Type I. Scomber colias showed the highest prevalence (100%), followed by M. merluccius (Atlantic 91.0%, Mediterranean 71.2%), T. mediterraneus (32.7%) and E. encrasicolus (25.9%). All the larvae found in Mediterranean hosts were genetically identified as Anisakis pegreffii, whereas 90.0% of the larvae found in the Atlantic M. merluccius belonged to Anisakis simplex sensu stricto and 10.0% to A. pegreffii. The mean abundance of Anisakis sp. larvae was positively correlated with fish size in E. encrasicolus, Atlantic M. merluccius and local M. merluccius. The prevalence of infection was greater in the body cavity (37.9%) than in the edible muscle (9.4%). However, 1.8% of the examined fish were infected exclusively in the muscle. Therefore, the risk associated to the consumption of raw or undercooked fishery products poses the need of measures such as visual inspection and preventive treatments to guarantee consumers’ health. PMID:28299289

  11. Growth enhancement in transgenic Atlantic salmon by the use of an "all fish" chimeric growth hormone gene construct.

    Science.gov (United States)

    Du, S J; Gong, Z Y; Fletcher, G L; Shears, M A; King, M J; Idler, D R; Hew, C L

    1992-02-01

    We have developed an "all fish" growth hormone (GH) chimeric gene construct by using an antifreeze protein gene (AFP) promoter from ocean pout linked to a chinook salmon GH cDNA clone. After microinjection into fertilized, nonactivated Atlantic salmon eggs via the micropyle, transgenic Atlantic salmon were generated. The presence of the transgene was detected by polymerase chain reaction (PCR) using specific oligonucleotide primers. A number of these transgenic fish showed dramatic increases in their growth rate. At one year old, the average increase of the transgenic fish was 2 to 6 fold and the largest transgenic fish was 13 times that of the average non-transgenic control.

  12. 76 FR 64327 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery...

    Science.gov (United States)

    2011-10-18

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration RIN 0648-XA727 Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery; South Atlantic Snapper-Grouper Fishery...

  13. Potential for electropositive metal to reduce the interactions of Atlantic sturgeon with fishing gear.

    Science.gov (United States)

    Bouyoucos, Ian; Bushnell, Peter; Brill, Richard

    2014-02-01

    Atlantic sturgeon (Acipenser oxyrhynchus) populations have been declared either endangered or threatened under the U.S. Endangered Species Act. Effective measures to repel sturgeon from fishing gear would be beneficial to both fish and fishers because they could reduce both fishery-associated mortality and the need for seasonal and area closures of specific fisheries. Some chondrostean fishes (e.g., sturgeons and paddlefishes) can detect weak electric field gradients (possibly as low as 5 Μv/cm) due to arrays of electroreceptors (ampullae of Lorenzini) on their snout and gill covers. Weak electric fields, such as those produced by electropositive metals (typically mixtures of the lanthanide elements), could therefore potentially be used as a deterrent. To test this idea, we recorded the behavioral responses of juvenile Atlantic sturgeon (31-43 cm fork length) to electropositive metal (primarily a mixture of the lanthanide elements neodymium and praseodymium) both in the presence and absence of food stimuli. Trials were conducted in an approximately 2.5 m diameter × 0.3 m deep tank, and fish behaviors were recorded with an overhead digital video camera. Video records were subsequently digitized (x, y coordinate system), the distance between the fish and the electropositive metal calculated, and data summarized by compiling frequency distributions with 5-cm bins. Juvenile sturgeon showed clear avoidance of electropositive metal but only when food was present. On the basis of our results, we conclude that the electropositive metals, or other sources of weak electric fields, may eventually be used to reduce the interactions of Atlantic sturgeon with fishing gear, but further investigation is needed.

  14. Comparative phylogeography of Atlantic reef fishes indicates both origin and accumulation of diversity in the Caribbean

    Directory of Open Access Journals (Sweden)

    Robertson D Ross

    2008-05-01

    Full Text Available Abstract Background Two processes may contribute to the formation of global centers of biodiversity: elevated local speciation rates (the center of origin hypothesis, and greater accumulation of species formed elsewhere (the center of accumulation hypothesis. The relative importance of these processes has long intrigued marine biogeographers but rarely has been tested. Results To examine how origin and accumulation affected the Greater Caribbean center of diversity, we conducted a range-wide survey of mtDNA cytochrome b in the widespread Atlantic reef damselfish Chromis multilineata (N = 183 that included 10 locations in all four tropical Atlantic biogeographic provinces: the Greater Caribbean, Brazil, the mid-Atlantic ridge, and the tropical eastern Atlantic. We analyzed this data and re-evaluated published genetic data from other reef fish taxa (wrasses and parrotfishes to resolve the origin and dispersal of mtDNA lineages. Parsimony networks, mismatch distributions and phylogenetic analyses identify the Caribbean population of C. multilineata as the oldest, consistent with the center of origin model for the circum-Atlantic radiation of this species. However, some Caribbean haplotypes in this species were derived from Brazilian lineages, indicating that mtDNA diversity has not only originated but also accumulated in the Greater Caribbean. Data from the wrasses and parrotfishes indicate an origin in the Greater Caribbean in one case, Caribbean origin plus accumulation in another, and accumulation in the remaining two. Conclusion Our analyses indicate that the Greater Caribbean marine biodiversity hotspot did not arise through the action of a single mode of evolutionary change. Reef fish distributions at the boundaries between Caribbean and Brazilian provinces (the SE Caribbean and NE Brazil, respectively indicate that the microevolutionary patterns we detected in C. multilineata and other reef fishes translate into macroevolutionary processes

  15. Gene-associated markers can assign origin in a weakly structured fish, Atlantic herring

    DEFF Research Database (Denmark)

    Bekkevold, Dorte; Helyar, Sarah J.; Limborg, Morten T.;

    2015-01-01

    Regulations on the exploitation of populations of commercially important fish species and the ensuing consumer interest in sustainable products have increased the need to accurately identify the population of origin of fish and fish products. Although genomics-based tools have proven highly useful......, there are relatively few examples in marine fish displaying accurate origin assignment. We synthesize data for 156 single-nucleotide polymorphisms typed in 1039 herring, Clupea harengus L., spanning the Northeast Atlantic to develop a tool that allows assignment of individual herring to their regional origin. We show...... management issues. We report novel genetic evidence that herring from the Baltic Sea contribute to catches in the North Sea, and find support that western Baltic feeding aggregations mainly constitute herring from the western Baltic with contributions from the Eastern Baltic. Our study describes a general...

  16. Climate change and credibility of fish stock agreements : the case of the north-east arctic cod

    OpenAIRE

    Ekerhovd, Nils-Arne

    2010-01-01

    We simulate how an increase in the productivity of the North-East Arctic cod stock would affect the Russian-Norwegian cooperation on the management of the stock. The productivity increase is linked to environmental conditions in the sea and to climate change through a temperature-dependent stock-recruitment relationship, where the numbers of recruits is positively related to the sea temperature given the spawning stock biomass. Increased recruitment and productivity of the stock improved the...

  17. Species Profiles. Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Mid-Atlantic). Spot

    Science.gov (United States)

    1989-02-01

    1978. Development of the northwestern Gulf of Mexico (May fishes in the Mid-Atlantic Bight. 1985). M.S. Thesis. Texas A&M Vol. IV. Carangidae through... Laguna Madre , a hypersaline estuary. Pages 383-389 Joseph, E.B. 1972. The status of in G. H. Lauff, ed. Estuaries, the sciaenid stocks of the Middle...Fisheries, other commercial sciaenids of the Morehead City, N.C. 80 pp. Texas Gulf. Bull. U.S. Bur. Fish . 44:129-214. Stickney, R.R., and M.L. Cuenco

  18. Infection of North Sea cod (Gadus morhua L.) postlarvae and juveniles with the parasites Hysterothylacium aduncum Rudolphi and Caligus sp

    DEFF Research Database (Denmark)

    Mehrdana, F.; Bahlool, Q. M.; Skovgaard, A.

    Parasitic infections of individual juvenile and adult Atlantic cod (Gadus morhua L.) have been well studied for decades, but infections of early life stages and the impact of parasitism on population level have been less well elucidated. It is generally assumed that early developmental stages...... size of infected (1-2 parasites per fish) and uninfected fish sizes in various age groups. Ageing was performed by otolith readings, and it was indicated that cod younger than 44 days were negatively affected by infection whereas cod older than 44 days tolerated this low parasite burden....

  19. Pathways of fish invasions in the Mid-Atlantic region of the United States

    Science.gov (United States)

    Lapointe, Nicolas W. R.; Fuller, Pam; Neilson, Matthew; Murphy, Brian R.; Angermeier, Paul

    2016-01-01

    Non-native fish introductions are a major threat to biodiversity and fisheries, and occur through numerous pathways that vary regionally in importance. A key strategy for managing invasions is to focus prevention efforts on pathways posing the greatest risk of future introductions. We identified high-risk pathways for fish establishment in the Mid-Atlantic region of the United States based on estimates of probability of establishment and records of previous introductions, which were considered in the context of emerging socioeconomic trends. We used estimates of propagule pressure, species’ environmental tolerance, and size of species pool to assess the risk of establishment by pathway. Pathways varied considerably in historic importance and species composition, with the majority of species introduced intentionally via stocking (primarily for sport, forage, or biocontrol) or bait release. Bait release, private stocking, illegal introductions intended to establish reproducing populations (e.g., of sport fish), aquaculture, and the sale of live organisms all create risks for future invasions in the Mid-Atlantic region. Of these pathways, bait release probably poses the greatest risk of introductions for the Mid-Atlantic region because propagule pressure is moderate, most released species are tolerant of local environmental conditions, and the pool of species available for transplantation is large. Our findings differ considerably from studies in other regions (e.g., bait release is a dominant pathway in the Mid-Atlantic region, whereas illegal introduction of sport fish is dominant in the western US and aquarium releases are dominant in Florida), demonstrating the need for regional-scale assessments of, and management strategies for, introduction pathways.

  20. Occurrence of nematodes of the genus Anisakis in Mediterranean and Atlantic fish marketed in Sardinia

    Directory of Open Access Journals (Sweden)

    Daniele Casti

    2017-01-01

    Full Text Available Anisakiasis is a gastrointestinal fishborne zoonosis caused by the ingestion of third stage larvae of the genus Anisakis. Between January and December 2013, 1112 specimens of four commercial fish species (Engraulis encrasicolus, Merluccius merluccius, Scomber colias and Trachurus mediterraneus marketed in Sardinia (Italy were examined for Anisakis sp. The overall prevalence of Anisakis spp larvae was 39.9%, all morphologically identified as Type I. Scomber colias showed the highest prevalence (100%, followed by M. merluccius (Atlantic 91.0%, Mediterranean 71.2%, T. mediterraneus (32.7% and E. encrasicolus (25.9%. All the larvae found in Mediterranean hosts were genetically identified as Anisakis pegreffii, whereas 90.0% of the larvae found in the Atlantic M. merluccius belonged to Anisakis simplex sensu stricto and 10.0% to A. pegreffii. The mean abundance of Anisakis sp. larvae was positively correlated with fish size in E. encrasicolus, Atlantic M. merluccius and local M. merluccius. The prevalence of infection was greater in the body cavity (37.9% than in the edible muscle (9.4%. However, 1.8% of the examined fish were infected exclusively in the muscle. Therefore, the risk associated to the consumption of raw or undercooked fishery products poses the need of measures such as visual inspection and preventive treatments to guarantee consumers’ health.

  1. Condition, prolonged swimming performance and muscle metabolic capacities of cod Gadus morhua.

    Science.gov (United States)

    Martínez, M; Guderley, H; Dutil, J-D; Winger, P D; He, P; Walsh, S J

    2003-02-01

    This study evaluated the link between swimming endurance and condition of Atlantic cod Gadus morhua that had been fed or starved during the 16 weeks preceding the tests, and assessed whether muscle metabolic capacities explain such links. The condition factor [(somatic mass x fork length(-3))x100] of starved cod was 0.54+/-0.1 whereas that of fed cod was 0.81+/-0.1. In white and red muscle, we measured four glycolytic enzymes: phosphofructokinase (PFK), pyruvate kinase (PK), creatine kinase (CK) and lactate dehydrogenase (LDH), two mitochondrial enzymes: cytochrome c oxidase (CCO) and citrate synthase (CS), a biosynthetic enzyme, nucleoside diphosphate kinase (NDPK), glycogen and protein levels and water content. Muscle samples were taken at three positions along the length of the fish; starvation affected the metabolic capacities of white muscle more than those of red muscle. The levels of glycolytic enzymes and glycogen changed more in white than red muscle during starvation. Both in fed and starved cod, muscle metabolic capacities varied with position along the fish; starvation reduced this longitudinal variation more in white than red muscle. In white muscle of fed cod, the glycolytic enzyme levels increased from head to tail, while in starved cod this longitudinal variation disappeared. In red muscle mitochondrial enzyme levels were highest in the caudal sample, but fewer differences were found for glycolytic enzymes. Swimming endurance was markedly affected by fish condition, with starved fish swimming only 30% of the time (and distance) of fed fish. This endurance was closely linked with the number of burst-coast movements during the test and the activity of CCO and LDH in white muscle. The number of burst-coast movements was significantly linked with condition factor and PFK activity in caudal red muscle and gill arch mass. Our data indicated that cod use both glycolytic and oxidative capacities to support endurance swimming. Furthermore, swimming endurance

  2. Type of carbohydrate in feed affects the expression of small leucine-rich proteoglycans (SLRPs), glycosaminoglycans (GAGs) and interleukins in skeletal muscle of Atlantic cod (Gadus morhua L.).

    Science.gov (United States)

    Tingbø, M G; Pedersen, M E; Grøndahl, F; Kolset, S O; Veiseth-Kent, E; Enersen, G; Hannesson, K O

    2012-09-01

    Aquaculture requires feed that ensures rapid growth and healthy fish. Higher inclusion of plant ingredients is desirable, as marine resources are limited. In this study we investigated the effects of higher starch inclusion in feed on muscular extracellular matrix and interleukin expression in farmed cod. Starch was replaced by complex fibers in the low-starch diet to keep total carbohydrate inclusion similar. Blood glucose and fructosamine levels were elevated in the high-starch group. The group fed a high-starch diet showed up-regulation on mRNA level of proteoglycans biglycan and decorin. ELISA confirmed the real-time PCR results on protein level for biglycan and also showed increase of lumican. For decorin the protein levels were decreased in the high-starch group, in contrast to real-time PCR results. Disaccharide analyses using HPLC showed reduction of glycosaminoglycans. Further, there was up-regulation of interleukin-1β and -10 on mRNA level in muscle. This study shows that the muscular extracellular matrix composition is affected by diet, and that a high-starch diet results in increased expression of pro-inflammatory genes similar to diabetes in humans.

  3. Does the Fukushima NPP disaster affect the caesium activity of North Atlantic Ocean fish?

    Directory of Open Access Journals (Sweden)

    G. Kanisch

    2013-08-01

    Full Text Available Fillet samples of marine fish collected from the East/West Greenland currents (GC and from the Baltic Sea (BS have been investigated by gamma-ray spectrometry within the regular German monitoring programme. In samples of the second half of 2011, 134Cs traces have been detected that are suggested to originate from the Fukushima fallout that was deposited in March/April 2011 over the northern North Atlantic and accumulated by fish. The radionuclide 134Cs (half-life 2 yr was indeed detected with quite small activities at about 0.0036 Bq kg−1 w.w. Existing box models describing the transport of Cs within seawater boxes of the northeast Atlantic allowed for estimation of 134Cs contributions from other sources, i.e. from the Chernobyl fallout and from discharges by the two major European nuclear reprocessing plants; both were negligible around Greenland, while for the Chernobyl fallout a small 134Cs background contribution to BS fish was estimated. Model results confirmed the level of 134C measured in BS fish and showed its maximum to have occurred in winter 2011/2012 followed by a continuous decrease. It was also determined that 134Cs activity, but not that of 134Cs, showed a significant negative correlation with sampling depth (150–400 m of GC fish; this strengthens our Fukushima fallout assumption. As a result, the Fukushima fallout in these sea areas only marginally enhanced (GC: 4%; BS: 0.1% pre-Fukushima levels of individual dose rates received by human fish consumers; the addition was around 0.001 μSv following the consumption of 10 kg of fish per year, which is not expected to cause concern according to present guidelines for radiation protection.

  4. Non-destructive sensing of the freshness of packed cod fish using conductivity and pH electrodes

    NARCIS (Netherlands)

    Heising, J.K.; Bartels, P.V.; Boekel, van M.A.J.S.; Dekker, M.

    2014-01-01

    The use of pH and conductivity electrodes as non-destructive methods for monitoring changes in the freshness status of packed fish is explored. The electrodes monitor changes in the electrical properties of an aqueous phase positioned in the headspace of the fish package. Volatile compounds produced

  5. A non-destructive ammonium detection method as indicator for freshness for packed fish: Application on cod

    NARCIS (Netherlands)

    Heising, J.K.; Dekker, M.; Bartels, P.V.; Boekel, van M.A.J.S.

    2012-01-01

    This paper introduces a non-destructive method for monitoring headspace ammonium as an indicator for changes in the freshness status of packed fish. Electrodes in an aqueous phase in the package monitor changes in the concentration of ammonia produced in/on the packed fish and released in the

  6. Non-destructive sensing of the freshness of packed cod fish using conductivity and pH electrodes

    NARCIS (Netherlands)

    Heising, J.K.; Bartels, P.V.; Boekel, van M.A.J.S.; Dekker, M.

    2014-01-01

    The use of pH and conductivity electrodes as non-destructive methods for monitoring changes in the freshness status of packed fish is explored. The electrodes monitor changes in the electrical properties of an aqueous phase positioned in the headspace of the fish package. Volatile compounds produced

  7. Mercury concentration trend as a possible result of changes in cod population demography.

    Science.gov (United States)

    Ruus, Anders; Hjermann, Dag Ø; Beylich, Bjørnar; Schøyen, Merete; Øxnevad, Sigurd; Green, Norman W

    2017-07-20

    Mercury (Hg) in Atlantic cod (Gadus morhua) is one of many parameters that are monitored through OSPAR's Joint Assessment and Monitoring Programme. Time series for cod in the Inner Oslofjord (Norway) go back to 1984. Until 2014, annual median Hg-concentrations in cod from the Inner Oslofjord showed both significant upward long-term (whole time series) and short-term (recent 10 years) trends (when 2015 was included, the short-term trend was not significant). However, the median length of the cod sampled also showed upward trends. This may have been caused by low cod recruitment in the area since the start of the 2000s, as indicated by beach seine surveys. To investigate how length would impact the trend analysis, the Hg-concentrations in the cod were normalised to 50 cm. No significant short-term trend in Hg-concentrations could be detected for length-normalised concentrations. The results indicated that most of the upward trend in Hg-concentrations could be attributed to the sampling of larger fish. The reasons for the apparent change in the cod population demography are not conclusive, however, sampling bias must also be considered. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. Autumn larval fish assemblages in the northwest African Atlantic coastal zone

    Science.gov (United States)

    Abdelouahab, Hinde; Berraho, Amina; Baibai, Tarik; Agouzouk, Aziz; Makaoui, Ahmed; Errhif, Ahmed

    2016-06-01

    A study on the assemblage composition and vertical distribution of larval fish was conducted in the southern area of the Moroccan Atlantic coast in Autumn 2011. A total of 1 680 fish larvae taxa were identified from 21 families. The majority of the larvae were present in the upper layers. Clupeids were the most abundant larvae taxa followed by Myctophidae, Gadidae and Sparidae, hence the larval fish assemblages (LFA) were variable in diff erent depth layers. Total fish larvae showed a preference for surface layers, and were mainly found above 75 m depth, with some exceptions. The maximum concentration of fish larvae was concentrated up to 25 m essentially above the thermocline, where chlorophyll a and mesozooplankton were abundant. Spatially, neritic families were located near the coast and at some off shore stations especially in the northern part, while oceanic families were more distributed towards off shore along the study area. Cluster analysis showed a segregation of two groups of larvae. However, a clear separation between neritic families and oceanic families was not found. Multivariate analysis highlighted the relationship between the distribution of larvae of diff erent families and environmental parameters. Temperature and salinity seem to have been the factors that acted on associations of fish larvae. Day/night vertical distributions suggest there was not a very significant vertical migration, probably due to adequate light levels for feeding.

  9. Mediterranean and Atlantic deep-sea fish assemblages: differences in biomass composition and size-related structure

    Directory of Open Access Journals (Sweden)

    Enric Massutí

    2004-12-01

    Full Text Available Data obtained over a period of twenty years from 214 bottom trawls, towed on a single warp at depths between 402 and 1993 m in the western Mediterranean (Algerian and Balearic basins and eastern North Atlantic (Rockall Trough and Porcupine Seabight, allowed a standardised comparison of density, biomass composition and size-related structure for both the whole fish fauna and for the most common species found within the deep-sea fish assemblages. All four areas are characterised by distinctly different and well-documented oceanographic conditions, biogeographical affinities and fishing exploitation. The results showed clear differences between the Atlantic and the Mediterranean deep-sea fish fauna, not only in density, species richness and composition, but also in the structure of the biomass that constitutes these assemblages. These differences are discussed in relation to environmental conditions and fishing pattern, which have determined the adaptive responses of both individual species and the whole ecosystem.

  10. Demersal fish assemblages off the Seine and Sedlo seamounts (northeast Atlantic)

    Science.gov (United States)

    Menezes, Gui M.; Rosa, Alexandra; Melo, Octávio; Pinho, Mário R.

    2009-12-01

    Seamounts are thought to support special biological communities, and often maintain high standing stocks of demersal and benthopelagic fishes. Seamount fish fauna have been described in several studies but few works have included species taken below 600 m. The demersal fish assemblages of the Seine and Sedlo seamounts (northeast Atlantic) from the summits to 2000 m depth were investigated based on longline survey catch data, conducted as part of the OASIS project. A total of 41 fish species from 24 families were caught at Seine near Madeira, and 30 species from 19 families were caught at Sedlo north of the Azores. Both fish faunas have high affinities with the neighbouring areas of the Azores, Madeira and with the eastern North Atlantic and the Mediterranean Sea. Overall abundances and mean body weights were slightly higher at Sedlo seamount, appearing in conformity with the latitudinal effect of increasing species abundance and productivity from south to north. The differential influence of the Mediterranean Water at each seamount may contribute to explain (a) the differences found in vertical distribution of common species, which tend to distribute deeper at Seine, and (b) the observed changes in the species composition and dominance in deeper waters. Multivariate analysis revealed a vertical structure that is approximately coincident with the expected zonation of water masses at each seamount. Physiological tolerance to the prevailing vertical hydrological conditions may explain the species distribution and the large-scale vertical assemblage structure found. However, further ecological factors like productivity patterns affecting the amount and quality of the available food appear to shape the abundance, diversity or dominance patterns of functional groups within those main assemblages. At Seine, the species Trachurus picturatus dominated the catches, mainly at the shallower edge of the plateau, appearing consistent with the sound-scattering layer interception

  11. Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Mid-Atlantic). Bay Anchovy

    Science.gov (United States)

    1989-02-01

    Laguna Madre of Pearcy, W., and S.W. Richards. 1962. Texas . Publ. Inst. Mar. Sc. Univ. Distribution and ecology of fishes Tex. 4(2):156-200. of the Mystic...ppt) in striped bass (Morone saxatilis) in the Upper Laguna Madre , Texas (Simmons Hudson River estuary were almost 1957). In the Mid-Atlantic Region...Seasonal abundance and distribution of marine fishes at a hot-water Fish . Serv. Fish . Bull. discharge in Galveston Bay, Texas . 76(2):438-487. Contrib. Mar

  12. Characterization of Francisella sp., GM2212, the first Francisella isolate from marine fish, Atlantic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Ottem, Karl F; Nylund, Are; Karlsbakk, Egil

    2007-01-01

    from F. tularensis and F. philomiragia. GM2212(T) is catalase-positive, indole positive, oxidase-negative, do not produce H(2)S in Triple Sugar Iron agar, and does not hydrolyze gelatin, is resistant to erythromycin and susceptible to ceftazidime, the latter five characteristics separating it from F...

  13. Early life of key fish species, capelin Mallotus villosus and Atlantic cod Gadus morhua, in West Greenland

    DEFF Research Database (Denmark)

    Malanski, Evandro

    feeding on prey sizes of about 5% of their own size (Paper I) and consequently the prey preference spectra covered calanoid nauplii, cladocerans and calanoid copepodites with increasing larval size. In the Godthåbsfjord system and Fyllas Bank area, 4 hydrographic zones were defined; in each zone distinct...... is linked to the break-up of ice cover and the subsequent irradiance increase in the water column, climatic changes in Arctic regions could lead to a mismatch between larval emergence and optimal conditions for their feeding and growth. Thus it would be feasible to investigate the capelin stock genetic...

  14. The contribution of migratory mesopelagic fishes to neuston fish assemblages across the Atlantic, Indian and Pacific Oceans

    KAUST Repository

    Olivar, M. Pilar

    2015-08-27

    Surface waters are an attractive foraging ground for small fish in the open ocean. This study aims to determine the importance of vertically migrating species in the neuston of oceanic waters across the Atlantic, Indian and Pacific Oceans and to ascertain the influence of environmental variables on their distribution patterns. Neustonic fish assemblages were primarily controlled by light. They were dominated by late-larvae and juveniles of Exocoetidae, Hemiramphidae and Scomberesocidae during the day. At night, the vertical migration of mesopelagic species changed the dominance pattern in favour of Myctophidae and Scomberesocidae. The neustonic families\\' distribution was primarily related to sea surface temperatures, whereas environmental variables at deeper layers were related to mesopelagic migrating families. Canonical correspondence analysis showed a low but statistically significant contribution of several environmental variables to myctophid species composition (10%), with minimum oxygen concentrations ranking first in variance explanation followed by maximum fluorescence, sea surface temperature and 400-m temperature. Spatial autocorrelation also explained 17% of the variance, indicating the influence of other factors such as historical, demographic and dispersal constraints. The low number of myctophid species in the North Pacific Equatorial Countercurrent appears to be related to the low oxygen concentrations observed in this province.

  15. Replacement of fish oil with thraustochytrid Schizochytrium sp. L oil in Atlantic salmon parr (Salmo salar L) diets.

    Science.gov (United States)

    Miller, Matthew R; Nichols, Peter D; Carter, Chris G

    2007-10-01

    Replacing fish oil with that from a docosahexaenoic acid (22:6omega3, DHA) rich single cell micro-organism, thraustochytrid Schizochytrium sp. L, in diets for Atlantic salmon (Salmo salar) was investigated. Four experimental diets containing 100% thraustochytrid oil (TO), 100% palm oil (PO) and a 4:1 palm and thraustochytrid oil mixture (MX) were compared to a fish oil (FO) diet over 9 weeks. A saltwater transfer challenge occurred at the end of the trial for 14 days to test the diet treatments on the ability of salmon to smolt. There were no significant differences in the feed consumption of the diets or the digestibility of the omega3 or omega6 PUFA, indicating no differences in the digestibility of fatty acids between diets. No significant differences were noted between the growth of fish on the four diet treatments. Significant differences were noted in the fatty acid profiles of the fish muscle tissues between all diets. Fish on the TO diet had a significantly greater percentage of DHA in muscle tissue compared with fish on all other diets. Blood osmolarity, which is inversely related to the ability of salmon to smolt, from the TO and FO fed fish was significantly lower than that of fish on the PO diet. This study showed that thraustochytrid oil can be used to replace fish oil in Atlantic salmon diets without detriment to the growth of parr. Including thraustochytrid oil in fish diets significantly increases the amount of DHA in Atlantic salmon muscle and therefore is a candidate for use in oil blends for salmon diets. Thraustochytrid oil provides a renewable source of essential fatty acids, in particular DHA, for aquafeeds.

  16. Mesopelagic fishes across the tropical and equatorial Atlantic: Biogeographical and vertical patterns

    Science.gov (United States)

    Olivar, M. Pilar; Hulley, P. Alexander; Castellón, Arturo; Emelianov, Mikhail; López, Cristina; Tuset, Víctor M.; Contreras, Tabit; Molí, Balbina

    2017-02-01

    In this investigation we analysed the changes in fish species occurrences and relative abundances across the tropical and equatorial Atlantic, and their vertical distribution patterns in relation to the different environmental scenarios. The study covers a wide region encompassing different water masses, and marked differences in productivity, from an oligotrophic zone close to the Brazilian coast, to a very productive upwelling region close to the Northwest African upwelling. Fishes were collected with a medium-sized midwater trawl (Mesopelagos), complemented by hauls made with a macrozooplankton net (MOCNESS). Species richness in the region was higher than in subtropical, temperate and cold regions. The total number of species and their overall abundance was lower in the stations closer to the Brazilian coast. Abundant species across the entire region were the gonostomatids Cyclothone alba, Cyclothone acclinidens, Cyclothone pallida and Cyclothone pseudopallida, the myctophid Lampanyctus alatus, the sternoptychid Sternoptyx diaphana, and the phosichthyid Vinciguerria nimbaria. The occurrences and abundances of C. parapallida, Lampanyctus nobilis and Lepidophanes guentheri were related to zones where AAIW waters occupied the mesopelagic layers, while other species such as Cyclothone livida and Polyipnus polli increased their abundance when AAIW disappears from their living depths. The presence of Eastern North Atlantic Central Water (ENACW) was associated with the occurrence of several myctophids (Benthosema glaciale, Ceratoscopelus maderensis, Diaphus holti, Diaphus rafinesquii, Hygophum hygomii, Lampanyctus crocodilus, Myctophum punctatum, Symbolophorus veranyi), and the gonostomatid Cyclothone braueri. In spite of the important differences in hydrographic features across the tropical and equatorial Atlantic, all stations showed either the general night migration into the epipelagic layers carried out by myctophids, phosicthyids, and some stomiids, or the

  17. Comparative metabolic rates of common western North Atlantic Ocean sciaenid fishes.

    Science.gov (United States)

    Horodysky, A Z; Brill, R W; Bushnell, P G; Musick, J A; Latour, R J

    2011-07-01

    The resting metabolic rates (R(R)) of western North Atlantic Ocean sciaenids, such as Atlantic croaker Micropogonias undulatus, spot Leiostomus xanthurus and kingfishes Menticirrhus spp., as well as the active metabolic rates (R(A)) of M. undulatus and L. xanthurus were investigated to facilitate inter and intraspecific comparisons of their energetic ecology. The R(R) of M. undulatus and L. xanthurus were typical for fishes with similar lifestyles. The R(R) of Menticirrhus spp. were elevated relative to those of M. undulatus and L. xanthurus, but below those of high-energy-demand species such as tunas Thunnus spp. and dolphinfish Coryphaena hippurus. Repeated-measures non-linear mixed-effects models were applied to account for within-individual autocorrelation and corrected for non-constant variance typical of noisy R(A) data sets. Repeated-measures models incorporating autoregressive first-order [AR(1)] and autoregressive moving average (ARMA) covariances provided significantly superior fits, more precise parameter estimates (i.e. reduced s.e.) and y-intercept estimates that more closely approximated measured R(R) for M. undulatus and L. xanthurus than standard least-squares regression procedures.

  18. Ecological traits influencing range expansion across large oceanic dispersal barriers: insights from tropical Atlantic reef fishes.

    Science.gov (United States)

    Luiz, Osmar J; Madin, Joshua S; Robertson, D Ross; Rocha, Luiz A; Wirtz, Peter; Floeter, Sergio R

    2012-03-01

    How do biogeographically different provinces arise in response to oceanic barriers to dispersal? Here, we analyse how traits related to the pelagic dispersal and adult biology of 985 tropical reef fish species correlate with their establishing populations on both sides of two Atlantic marine barriers: the Mid-Atlantic Barrier (MAB) and the Amazon-Orinoco Plume (AOP). Generalized linear mixed-effects models indicate that predictors for successful barrier crossing are the ability to raft with flotsam for the deep-water MAB, non-reef habitat usage for the freshwater and sediment-rich AOP, and large adult-size and large latitudinal-range for both barriers. Variation in larval-development mode, often thought to be broadly related to larval-dispersal potential, is not a significant predictor in either case. Many more species of greater taxonomic diversity cross the AOP than the MAB. Rafters readily cross both barriers but represent a much smaller proportion of AOP crossers than MAB crossers. Successful establishment after crossing both barriers may be facilitated by broad environmental tolerance associated with large body size and wide latitudinal-range. These results highlight the need to look beyond larval-dispersal potential and assess adult-biology traits when assessing determinants of successful movements across marine barriers.

  19. Upstream movements of Atlantic Salmon in the Lower Penobscot River, Maine following two dam removals and fish passage modifications

    Science.gov (United States)

    Izzo, Lisa K.; Maynard, George A.; Zydlewski, Joseph

    2016-01-01

    The Penobscot River Restoration Project (PRRP), to be completed in 2016, involved an extensive plan of dam removal, increases in hydroelectric capacity, and fish passage modifications to increase habitat access for diadromous species. As part of the PRRP, Great Works and Veazie dams were removed, making Milford Dam the first impediment to federally endangered Atlantic Salmon Salmo salar. Upstream habitat access for Atlantic Salmon is dependent upon successful and timely passage at Milford Dam because nearly all suitable spawning habitat is located upstream. In 2014 and 2015, a total of 73 adult salmon were radio-tagged to track their upstream movements through the Penobscot River to assess potential delays at (1) the dam remnants, (2) the confluence of the Stillwater Branch and the main stem of the Penobscot River below the impassable Orono Dam, and (3) the Milford Dam fish lift (installed in 2014). Movement rates through the dam remnants and the Stillwater confluence were comparable to open river reaches. Passage efficiency of the fish lift was high in both years (95% and 100%). However, fish experienced long delays at Milford Dam, with approximately one-third of fish taking more than a week to pass in each year, well below the Federal Energy Regulatory Commission passage standard of 95% within 48 h. Telemetry indicates most fish locate the fishway entrance within 5 h of arrival and were observed at the entrance at all hours of the day. These data indicate that overall transit times through the lower river were comparable to reported movement rates prior to changes to the Penobscot River due to the substantial delays seen at Milford Dam. The results of this study show that while adult Atlantic Salmon locate the new fish lift entrance quickly, passage of these fish was significantly delayed under 2014–2015 operations.

  20. Rapid, economical single-nucleotide polymorphism and microsatellite discovery based on de novo assembly of a reduced representation genome in a non-model organism: a case study of Atlantic cod Gadus morhua.

    Science.gov (United States)

    Carlsson, J; Gauthier, D T; Carlsson, J E L; Coughlan, J P; Dillane, E; Fitzgerald, R D; Keating, U; McGinnity, P; Mirimin, L; Cross, T F

    2013-03-01

    By combining next-generation sequencing technology (454) and reduced representation library (RRL) construction, the rapid and economical isolation of over 25 000 potential single-nucleotide polymorphisms (SNP) and >6000 putative microsatellite loci from c. 2% of the genome of the non-model teleost, Atlantic cod Gadus morhua from the Celtic Sea, south of Ireland, was demonstrated. A small-scale validation of markers indicated that 80% (11 of 14) of SNP loci and 40% (6 of 15) of the microsatellite loci could be amplified and showed variability. The results clearly show that small-scale next-generation sequencing of RRL genomes is an economical and rapid approach for simultaneous SNP and microsatellite discovery that is applicable to any species. The low cost and relatively small investment in time allows for positive exploitation of ascertainment bias to design markers applicable to specific populations and study questions.

  1. Response of branchial Na(+)/K(+) ATPase to changes in ambient temperature in Atlantic cod (Gadus morhua) and whiting (Merlangius merlangus).

    Science.gov (United States)

    Michael, Katharina; Koschnick, Nils; Pörtner, Hans-O; Lucassen, Magnus

    2016-05-01

    The maintenance of ion and pH homeostasis despite changes in ambient temperature is crucial for ectothermic organisms. Thermal sensitivity of Na(+)/K(+) ATPase mRNA expression, protein expression and activity was determined in gills of North Sea cod (NC) and Northeastern Arctic cod (NEAC), acclimated for 6 weeks at 4 and 10 °C and compared to field samples of North Sea cod (sNC), acclimatized to early spring (4 °C) and summer (18 °C) conditions. The same analyses were conducted in gills of the confamiliar whiting, acclimated at 4 and 10 °C. Branchial Na(+)/K(+) ATPase capacities remained uncompensated at functional and protein levels in NC and NEAC at both acclimation temperatures. Na(+)/K(+) ATPase mRNA expression in NEAC acclimated at 10 °C was about twofold higher compared to NC, indicating some population-specific differentiation at this level. Lower Na(+)/K(+) ATPase capacities in gills of warm-acclimatized sNC at common assay temperatures indicate thermal compensation between seasonal extremes, and post-translational modifications contributed to this mitigation at high assay temperature. Together, cod compensates Na(+)/K(+) ATPase capacities on the warm edge of the thermal window and below 4 °C, respectively. In contrast, whiting Na(+)/K(+) ATPase capacities were cold compensated at 4 °C, supported by 1.5-fold higher mRNA and protein expression. Besides, capacities were lower in whiting compared to NC and NEAC at optimum temperature, which may be advantageous in terms of reduced maintenance cost, but at temperatures ≤4 °C, compensation may represent an energy trade-off to maintain homeostasis. The species-specific response of gadid Na(+)/K(+) ATPase indicates certain threshold temperatures beyond which compensation of the pump is elicited, possibly related to the different biogeography of these species.

  2. Diversity of planktonic fish larvae along a latitudinal gradient in the Eastern Atlantic Ocean estimated through DNA barcodes

    Directory of Open Access Journals (Sweden)

    Alba Ardura

    2016-10-01

    Full Text Available Mid-trophic pelagic fish are essential components of marine ecosystems because they represent the link between plankton and higher predators. Moreover, they are the basis of the most important fisheries resources; for example, in African waters. In this study, we have sampled pelagic fish larvae in the Eastern Atlantic Ocean along a latitudinal gradient between 37°N and 2°S. We have employed Bongo nets for plankton sampling and sorted visually fish and fish larvae. Using the cytochrome oxidase I gene (COI as a DNA barcode, we have identified 44 OTUs down to species level that correspond to 14 families, with Myctophidae being the most abundant. A few species were cosmopolitan and others latitude-specific, as was expected. The latitudinal pattern of diversity did not exhibit a temperate-tropical cline; instead, it was likely correlated with environmental conditions with a decline in low-oxygen zones. Importantly, gaps and inconsistencies in reference DNA databases impeded accurate identification to the species level of 49% of the individuals. Fish sampled from tropical latitudes and some orders, such as Perciformes, Myctophiformes and Stomiiformes, were largely unidentified due to incomplete references. Some larvae were identified based on morphology and COI analysis for comparing time and costs employed from each methodology. These results suggest the need of reinforcing DNA barcoding reference datasets of Atlantic bathypelagic tropical fish that, as main prey of top predators, are crucial for ecosystem-based management of fisheries resources.

  3. Diversity of planktonic fish larvae along a latitudinal gradient in the Eastern Atlantic Ocean estimated through DNA barcodes

    Science.gov (United States)

    Morote, Elvira; Kochzius, Marc; Garcia-Vazquez, Eva

    2016-01-01

    Mid-trophic pelagic fish are essential components of marine ecosystems because they represent the link between plankton and higher predators. Moreover, they are the basis of the most important fisheries resources; for example, in African waters. In this study, we have sampled pelagic fish larvae in the Eastern Atlantic Ocean along a latitudinal gradient between 37°N and 2°S. We have employed Bongo nets for plankton sampling and sorted visually fish and fish larvae. Using the cytochrome oxidase I gene (COI) as a DNA barcode, we have identified 44 OTUs down to species level that correspond to 14 families, with Myctophidae being the most abundant. A few species were cosmopolitan and others latitude-specific, as was expected. The latitudinal pattern of diversity did not exhibit a temperate-tropical cline; instead, it was likely correlated with environmental conditions with a decline in low-oxygen zones. Importantly, gaps and inconsistencies in reference DNA databases impeded accurate identification to the species level of 49% of the individuals. Fish sampled from tropical latitudes and some orders, such as Perciformes, Myctophiformes and Stomiiformes, were largely unidentified due to incomplete references. Some larvae were identified based on morphology and COI analysis for comparing time and costs employed from each methodology. These results suggest the need of reinforcing DNA barcoding reference datasets of Atlantic bathypelagic tropical fish that, as main prey of top predators, are crucial for ecosystem-based management of fisheries resources. PMID:27761307

  4. Growth, temperature and density relationships of North Sea cod ( Gadus morhua )

    DEFF Research Database (Denmark)

    Rindorf, Anna; Jensen, Henrik; Schrum, Corinna

    2008-01-01

    This study presents an analysis of the relationship between ambient temperature, cod density, fishing mortality, prey fish biomass, and growth of North Sea cod (Gadus morhua) as estimated from survey catches during the period from 1983 to 2006. Growth of young cod was positively related to temper......This study presents an analysis of the relationship between ambient temperature, cod density, fishing mortality, prey fish biomass, and growth of North Sea cod (Gadus morhua) as estimated from survey catches during the period from 1983 to 2006. Growth of young cod was positively related...

  5. Alternative adaptive immunity strategies: coelacanth, cod and shark immunity.

    Science.gov (United States)

    Buonocore, Francesco; Gerdol, Marco

    2016-01-01

    The advent of high throughput sequencing has permitted to investigate the genome and the transcriptome of novel non-model species with unprecedented depth. This technological advance provided a better understanding of the evolution of adaptive immune genes in gnathostomes, revealing several unexpected features in different fish species which are of particular interest. In the present paper, we review the current understanding of the adaptive immune system of the coelacanth, the elephant shark and the Atlantic cod. The study of coelacanth, the only living extant of the long thought to be extinct Sarcopterygian lineage, is fundamental to bring new insights on the evolution of the immune system in higher vertebrates. Surprisingly, coelacanths are the only known jawed vertebrates to lack IgM, whereas two IgD/W loci are present. Cartilaginous fish are of great interest due to their basal position in the vertebrate tree of life; the genome of the elephant shark revealed the lack of several important immune genes related to T cell functions, which suggest the existence of a primordial set of TH1-like cells. Finally, the Atlantic cod lacks a functional major histocompatibility II complex, but balances this evolutionary loss with the expansion of specific gene families, including MHC I, Toll-like receptors and antimicrobial peptides. Overall, these data point out that several fish species present an unconventional adaptive immune system, but the loss of important immune genes is balanced by adaptive evolutionary strategies which still guarantee the establishment of an efficient immune response against the pathogens they have to fight during their life.

  6. Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)

    DEFF Research Database (Denmark)

    Limborg, Morten; Helyar, S.J.; de Bruyn, M.;

    2012-01-01

    High gene flow is considered the norm for most marine organisms and is expected to limit their ability to adapt to local environments. Few studies have directly compared the patterns of differentiation at neutral and selected gene loci in marine organisms. We analysed a transcriptome-derived panel...... of 281 SNPs in Atlantic herring (Clupea harengus), a highly migratory small pelagic fish, for elucidating neutral and selected genetic variation among populations and to identify candidate genes for environmental adaptation. We analysed 607 individuals from 18 spawning locations in the northeast Atlantic......, including two temperature clines (5–12 C) and two salinity clines (5–35&). By combining genome scan and landscape genetic analyses, four genetically distinct groups of herring were identified: Baltic Sea, Baltic–North Sea transition area, North Sea ⁄ British Isles and North Atlantic; notably, samples...

  7. Slow adaptation in the face of rapid warming leads to collapse of the Gulf of Maine cod fishery.

    Science.gov (United States)

    Pershing, Andrew J; Alexander, Michael A; Hernandez, Christina M; Kerr, Lisa A; Le Bris, Arnault; Mills, Katherine E; Nye, Janet A; Record, Nicholas R; Scannell, Hillary A; Scott, James D; Sherwood, Graham D; Thomas, Andrew C

    2015-11-13

    Several studies have documented fish populations changing in response to long-term warming. Over the past decade, sea surface temperatures in the Gulf of Maine increased faster than 99% of the global ocean. The warming, which was related to a northward shift in the Gulf Stream and to changes in the Atlantic Multidecadal Oscillation and Pacific Decadal Oscillation, led to reduced recruitment and increased mortality in the region's Atlantic cod (Gadus morhua) stock. Failure to recognize the impact of warming on cod contributed to overfishing. Recovery of this fishery depends on sound management, but the size of the stock depends on future temperature conditions. The experience in the Gulf of Maine highlights the need to incorporate environmental factors into resource management.

  8. Fishes associated with spinner dolphins at Fernando de Noronha Archipelago, tropical Western Atlantic: an update and overview

    Directory of Open Access Journals (Sweden)

    Ivan Sazima

    Full Text Available An update is presented for fish species associated with spinner dolphins at Fernando de Noronha Archipelago, tropical Western Atlantic, providing a general view of their diversity. The associates are mostly reef-dwelling fishes that feed on the dolphin wastes. Twelve species are habitual or occasional plankton-eaters and two species are herbivores that occasionally forage on floating pieces of algae. One species is a strict carnivore, one species is a hitchhiker that forages on a variety of foods including parasites and dead tissue from the dolphins, and one species is a carnivore that joins the dolphin groups to forage on schools of small fishes or squids. We predict that the list of fish associated with spinner dolphins will expand mostly with addition of habitual or occasional plankton-eaters.

  9. North Atlantic ecosystem shifts revealed by cod otolith δ15N and δ13C chronologies

    DEFF Research Database (Denmark)

    Pedersen, Jens Brøgger; Nielsen, Jens Munk; Steingrund, Petur

    annual mean values over time were seen in both ecosystems, suggesting δ15N & δ13C values were affected by the same overall processes. There were significant effects of climate variables (temperature, Atlantic Multi-decadal Oscillation (AMO) and Sub Polar Gyre index) on δ15N and δ13C chronologies in both...

  10. Observations on fish grazing of the cultured kelps Undaria pinnatifida and Saccharina latissima (Phaeophyceae, Lam inariales in Spanish Atlantic waters

    Directory of Open Access Journals (Sweden)

    César Peteiro

    2012-09-01

    Full Text Available Despite the great importance of grazing by herbivorous fishes in the marine environment, the knowledge of this phenomenon on seaweeds cultivationis very limited.Indeed, there is not available information on the effects of fish grazing in the farming of economically valuable kelps.During an investigation of the cultivation of commercial kelps Undaria pinnatifida and Saccharina latissima in North Western Atlantic coast of Spain (Galicia,it was found that grazing by fishes was sometimes responsible for removing of algal’s material from culture ropes.Fish grazing were generally rare and with a minor influence, usually its adverse effects are limited to a small decrease in the yield in some culture ropes,however,in some cases,it can also involve the lost of virtually the entire crop of culture rope.Most of herbivore grazing was associated to sparid fishes such as bogue(Boops boops,and salema(Sarpasalpa. Preferably, herbivorous fishes consumed blade of both cultured kelps when they were still young fronds(juvenile stage of algae. Indeed, blade of adult fronds was clearly less affected, and in S.latissima adults there was even not observed any fish grazing effects.Herein, different biotic and abiotic factors are discussed as possible causes of the influence of fish grazing on cultured kelps.

  11. Comparative impacts of temperature and trade-offs on egg ecology of north Atlantic pelagic fish species

    DEFF Research Database (Denmark)

    Tsoukali, Stavroula; MacKenzie, Brian

    The early life history stages of fish are considered the most vulnerable and can be strongly affected by environmental variability, leading to population fluctuations. Temperature has a major role on development and mortality rates, with consequences for recruitment and overall stock productivity....... We collated development and survival data from publications on laboratory egg incubation experiments to investigate and compare the development, daily mortality and survival of fish eggs from pelagic species in the north Atlantic at different temperatures, and to investigate whether trade-offs exist...

  12. Upper thermal limits of cardiac function for Arctic cod Boreogadus saida, a key food web fish species in the Arctic Ocean.

    Science.gov (United States)

    Drost, H E; Carmack, E C; Farrell, A P

    2014-06-01

    The objective of this study was to determine the upper thermal limits of Arctic cod Boreogadus saida by measuring the response of maximum heart rate (f(Hmax)) to acute warming. One set of fish were tested in a field laboratory in Cambridge Bay (CB), Nunavut (north of the Arctic Circle), and a second set were tested after air transport to and 6 month temperature acclimation at the Vancouver Aquarium (VA) laboratory. In both sets of tests, with B. saida acclimated to 0° C, f(Hmax) increased during acute warming up to temperatures considerably higher than the acclimation temperature and the near-freezing Arctic temperatures in which they are routinely found. Indeed, f(Hmax) increased steadily between 0.5 and 5.5° C, with no significant difference between the CB and VA tests (P > 0.05) and with an overall mean ± s.e. Q10 of 2.4 ± 0.5. The first Arrhenius breakpoint temperature (T(AB)) for f(Hmax) was also statistically indistinguishable for the two sets of tests (mean ± s.e. 3.2 ± 0.3 and 3.6 ± 0.3° C), suggesting that the temperature optimum for B. saida could be reliably measured after live transport to a more southerly laboratory location. Continued warming above 5.5° C revealed a large variability among individuals in the upper thermal limits that triggered cardiac arrhythmia (T(arr)), ranging from 10.2 to 15.2° C with mean ± s.e. 12.4 ± 0.4° C (n = 11) for the field study. A difference did exist between the CB and VA breakpoint temperatures when the Q10 value decreased below 2 (the Q10 breakpoint temperature; T(QB)) at 8.0 and 5.5° C, respectively. These results suggest that factors, other than thermal tolerance and associated cardiac performance, may influence the realized distribution of B. saida within the Arctic Circle.

  13. Evaluating machine-learning techniques for recruitment forecasting of seven North East Atlantic fish species

    KAUST Repository

    Fernandes, José Antonio

    2015-01-01

    The effect of different factors (spawning biomass, environmental conditions) on recruitment is a subject of great importance in the management of fisheries, recovery plans and scenario exploration. In this study, recently proposed supervised classification techniques, tested by the machine-learning community, are applied to forecast the recruitment of seven fish species of North East Atlantic (anchovy, sardine, mackerel, horse mackerel, hake, blue whiting and albacore), using spawning, environmental and climatic data. In addition, the use of the probabilistic flexible naive Bayes classifier (FNBC) is proposed as modelling approach in order to reduce uncertainty for fisheries management purposes. Those improvements aim is to improve probability estimations of each possible outcome (low, medium and high recruitment) based in kernel density estimation, which is crucial for informed management decision making with high uncertainty. Finally, a comparison between goodness-of-fit and generalization power is provided, in order to assess the reliability of the final forecasting models. It is found that in most cases the proposed methodology provides useful information for management whereas the case of horse mackerel is an example of the limitations of the approach. The proposed improvements allow for a better probabilistic estimation of the different scenarios, i.e. to reduce the uncertainty in the provided forecasts.

  14. Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Mid-Atlantic): Atlantic Menhaden

    Science.gov (United States)

    1989-08-01

    eggs and larvae (Reintjes descriptions of Atlantic menhaden 1961, 1968; Herman 1963; Kendall and larvae and juveniles . Reintjes 1975; Ferraro 1980a,b...function and community 12 dynamics have received little ENVIRONMENTAL REQUIREMENTS attention. Larvae and juveniles are seasonally important

  15. Fishmeal-free Atlantic salmon feed formulation shows promise - Joint research between TCFFI, USDA and EWOS uses new diet for post-smolt to food-size fish

    Science.gov (United States)

    The 2 MT/week of Atlantic salmon that The Conservation Fund Freshwater Institute provided to market in March and April of 2016 were fed a custom diet during nearly 90% of their growth that met the following sustainability criteria: - Fishmeal free - GMO free - Zero wild fish in: fish out according t...

  16. Who's your mama? Riverine hybridisation of threatened freshwater Trout Cod and Murray Cod.

    Science.gov (United States)

    Couch, Alan J; Unmack, Peter J; Dyer, Fiona J; Lintermans, Mark

    2016-01-01

    Rates of hybridization and introgression are increasing dramatically worldwide because of translocations, restocking of organisms and habitat modifications; thus, determining whether hybridization is occuring after reintroducing extirpated congeneric species is commensurately important for conservation. Restocking programs are sometimes criticized because of the genetic consequences of hatchery-bred fish breeding with wild populations. These concerns are important to conservation restocking programs, including those from the Australian freshwater fish family, Percichthyidae. Two of the better known Australian Percichthyidae are the Murray Cod, Maccullochella peelii and Trout Cod, Maccullochella macquariensis which were formerly widespread over the Murray Darling Basin. In much of the Murrumbidgee River, Trout Cod and Murray Cod were sympatric until the late 1970s when Trout Cod were extirpated. Here we use genetic single nucleotide polymorphism (SNP) data together with mitochondrial sequences to examine hybridization and introgression between Murray Cod and Trout Cod in the upper Murrumbidgee River and consider implications for restocking programs. We have confirmed restocked riverine Trout Cod reproducing, but only as inter-specific matings, in the wild. We detected hybrid Trout Cod-Murray Cod in the Upper Murrumbidgee, recording the first hybrid larvae in the wild. Although hybrid larvae, juveniles and adults have been recorded in hatcheries and impoundments, and hybrid adults have been recorded in rivers previously, this is the first time fertile F1 have been recorded in a wild riverine population. The F1 backcrosses with Murray cod have also been found to be fertile. All backcrosses noted were with pure Murray Cod. Such introgression has not been recorded previously in these two species, and the imbalance in hybridization direction may have important implications for restocking programs.

  17. A new compilation of stomach content data for commercially important pelagic fish species in the northeast Atlantic

    Science.gov (United States)

    Pinnegar, J. K.; Goñi, N.; Trenkel, V. M.; Arrizabalaga, H.; Melle, W.; Keating, J.; Óskarsson, G.

    2015-02-01

    There is increasing demand for information on predator-prey interactions in the ocean as a result of legislative commitments aimed at achieving sustainable exploitation. However, comprehensive data sets are lacking for many fish species and this has hampered development of multispecies fisheries models and the formulation of effective food-web indicators. This work describes a new compilation of stomach content data for five pelagic fish species (herring, blue whiting, mackerel, albacore and bluefin tuna) sampled across the northeast Atlantic and submitted to the PANGAEA open-access data portal (www.pangaea.de). We provide detailed descriptions of sample origin and of the corresponding database structures. We describe the main results in terms of diet composition and predator-prey relationships. The feeding preferences of small pelagic fish (herring, blue whiting, mackerel) were sampled over a very broad geographic area within the North Atlantic basin, from Greenland in the west, to the Lofoten Islands in the east and from the Bay of Biscay northwards to the Arctic. This analysis revealed significant differences in the prey items selected in different parts of the region at different times of year. Tunas (albacore and bluefin) were sampled in the Bay of Biscay and Celtic Sea. Dominant prey items for these species varied by location, year and season. This data compilation exercise represents one of the largest and most wide-ranging ever attempted for pelagic fish in the North Atlantic. The earliest data included in the database were collected in 1864, whereas the most recent were collected in 2012. Data sets are available at doi:10.1594/PANGAEA.820041 and doi:10.1594/PANGAEA.826992.

  18. Understanding climate impacts on recruitment and spatial dynamics of Atlantic cod in the Gulf of Maine: Integration of observations and modeling

    Science.gov (United States)

    Runge, Jeffrey A.; Kovach, Adrienne I.; Churchill, James H.; Kerr, Lisa A.; Morrison, John R.; Beardsley, Robert C.; Berlinsky, David L.; Chen, Changsheng; Cadrin, Steven X.; Davis, Cabell S.; Ford, Kathryn H.; Grabowski, Jonathan H.; Howell, W. Huntting; Ji, Rubao; Jones, Rebecca J.; Pershing, Andrew J.; Record, Nicholas R.; Thomas, Andrew C.; Sherwood, Graham D.; Tallack, Shelly M. L.; Townsend, David W.

    2010-10-01

    We put forward a combined observing and modeling strategy for evaluating effects of environmental forcing on the dynamics of spatially structured cod populations spawning in the western Gulf of Maine. Recent work indicates at least two genetically differentiated complexes in this region: a late spring spawning, coastal population centered in Ipswich Bay, and a population that spawns in winter inshore and on nearshore banks in the Gulf of Maine and off southern New England. The two populations likely differ in trophic interactions and in physiological and behavioral responses to different winter and spring environments. Coupled physical-biological modeling has advanced to the point where within-decade forecasting of environmental conditions for recruitment to each of the two populations is feasible. However, the modeling needs to be supported by hydrographic, primary production and zooplankton data collected by buoys, and by data from remote sensing and fixed station sampling. Forecasts of environmentally driven dispersal and growth of planktonic early life stages, combined with an understanding of possible population-specific predator fields, usage of coastal habitat by juveniles and adult resident and migratory patterns, can be used to develop scenarios for spatially explicit population responses to multiple forcings, including climate change, anthropogenic impacts on nearshore juvenile habitat, connectivity among populations and management interventions such as regional fisheries closures.

  19. Reef fish and benthic assemblages of the Trindade and Martin Vaz Island group, southwestern Atlantic

    Directory of Open Access Journals (Sweden)

    Guilherme Henrique Pereira-Filho

    2011-09-01

    Full Text Available The Trindade and Martin Vaz island group (TMVIG is located at about 1,120 km off the Brazilian coast. Despite its importance, highlighted by the presence of several endemic fish species, the TMVIG lacks detailed information on the structure of fish and benthic assemblages. Presented here is the first quantitative assessment of reef fish and benthic assemblages of the TMVIG in a depth gradient ranging from 5 to 45 m. Additional qualitative information on reef assemblages between 45 and 100 m was obtained using advanced gas diving techniques (TRIMIX and a remotely operated vehicle (ROV. Similarly to other Brazilian oceanic islands, the TMVIG possesses depauperated fish and benthic assemblages, possibly due to its isolation and small size in comparison to the mainland. Depth was the most important factor affecting the structure of fish assemblages, with the density of most fish species declining with depth. Deep reefs (> 45 m were characterized by the presence of extensive rhodolith beds and rocky reefs sparsely covered with crustose coralline algae, black coral (Cirripathes sp. and a few massive or plate-like reef corals. Part-time or obligatory planktivorous fishes (e.g. Cephalopholis furcifer and Clepticus brasiliensis also dominated deep reefs. Similar characteristics were recorded in mesophotic reef ecosystems across the Western Atlantic. Evidence of overfishing (obtained here and in other recent studies, the presence of four endemic and restricted range fish species, as well as the increase in number of new (and still undescribed endemic taxa, indicates that the adoption of precautionary conservation measures are urgently needed in order to maintain the fragile and unique ecosystems of the TMVIG.O conjunto insular de Trindade e Martin Vaz (CITMV está localizado a aproximadamente 1.120 km da costa brasileira. Apesar de sua importância, salientada pela presença de diversas espécies endêmicas de peixes, não existem informações detalhadas

  20. Who’s your mama? Riverine hybridisation of threatened freshwater Trout Cod and Murray Cod

    Science.gov (United States)

    Unmack, Peter J.; Dyer, Fiona J.; Lintermans, Mark

    2016-01-01

    Rates of hybridization and introgression are increasing dramatically worldwide because of translocations, restocking of organisms and habitat modifications; thus, determining whether hybridization is occuring after reintroducing extirpated congeneric species is commensurately important for conservation. Restocking programs are sometimes criticized because of the genetic consequences of hatchery-bred fish breeding with wild populations. These concerns are important to conservation restocking programs, including those from the Australian freshwater fish family, Percichthyidae. Two of the better known Australian Percichthyidae are the Murray Cod, Maccullochella peelii and Trout Cod, Maccullochella macquariensis which were formerly widespread over the Murray Darling Basin. In much of the Murrumbidgee River, Trout Cod and Murray Cod were sympatric until the late 1970s when Trout Cod were extirpated. Here we use genetic single nucleotide polymorphism (SNP) data together with mitochondrial sequences to examine hybridization and introgression between Murray Cod and Trout Cod in the upper Murrumbidgee River and consider implications for restocking programs. We have confirmed restocked riverine Trout Cod reproducing, but only as inter-specific matings, in the wild. We detected hybrid Trout Cod–Murray Cod in the Upper Murrumbidgee, recording the first hybrid larvae in the wild. Although hybrid larvae, juveniles and adults have been recorded in hatcheries and impoundments, and hybrid adults have been recorded in rivers previously, this is the first time fertile F1 have been recorded in a wild riverine population. The F1 backcrosses with Murray cod have also been found to be fertile. All backcrosses noted were with pure Murray Cod. Such introgression has not been recorded previously in these two species, and the imbalance in hybridization direction may have important implications for restocking programs.

  1. The comparative feeding ecology of temperate and tropical deep-sea fishes from the western North Atlantic

    Science.gov (United States)

    Crabtree, R. E.; Carter, J.; Musick, J. A.

    1991-10-01

    A study of the feeding habits of 32 species of fishes from the continental slope, rise, and abyss of temperate and tropical regions of the western North Atlantic was conducted to ascertain if regional faunal differences were related to differences in trophic structure. Fishes consumed a wide variety of benthic and pelagic prey and appear to have diets comparable to their counterparts on the continental shelf. Commonly occurring small to moderate sized species fed predominately on small crustaceans and polychaetes, while less common large-bodied species igested decapods and teleosts and displayed ontogenetic shifts in diets. In some cases, presence or absence of a particular taxon from the respective areas appears related to food availability, although no single causal factor adequately explains all of the observed faunal differences.

  2. Dynamics of fish assemblages on a continuous rocky reef and adjacent unconsolidated habitats at Fernando de Noronha Archipelago, tropical western Atlantic

    Directory of Open Access Journals (Sweden)

    Paulo R. Medeiros

    Full Text Available In recent years, many studies investigated how density-dependent factors, such as shortages in microhabitat and food availability influence the structure of reef fish assemblages. Most of what is currently known, however, comes from comparisons of isolated patch reefs and from correlations between fish abundance and one or few microhabitat variables. In addition, most studies were done in the Caribbean and Indo-Pacific regions, whereas the South Atlantic region has been, to date, understudied. The present study evaluated spatial and temporal variations in reef fish abundance and species richness in a continuous rocky reef and adjacent unconsolidated habitats in a Southwestern Atlantic reef, using underwater techniques to assess both fish numbers and microhabitat variables (depth, rugosity, number of crevices and percent cover of live benthic organisms, bare rock, sand, and limestone. Higher species richness was observed at consolidated substratum stations on both sampling periods (May and October, but fish abundance did not show a significant spatial variation. Topographical complexity and percent cover of algae (except coralline algae were amongst the most important determinants of species richness, and correlations between fish size and refuge crevice size were observed. The non-random patterns of spatial variation in species richness, and to a lesser extent, fish abundance, were related to differences in substratum characteristics and the inherent characteristics of fishes (i.e. habitat preferences and not to geographical barriers restraining fish movement. This study highlights the importance of concomitantly assessing several microhabitat variables to determine their relative influence in reef fish assemblages.

  3. Mesophotic reef fish assemblages of the remote St. Peter and St. Paul's Archipelago, Mid-Atlantic Ridge, Brazil

    Science.gov (United States)

    Rosa, Marcos Rogerio; Alves, Aline Cristina; Medeiros, Diego Valverde; Coni, Ericka Oliveira Cavalcanti; Ferreira, Camilo Moitinho; Ferreira, Beatrice Padovani; de Souza Rosa, Ricardo; Amado-Filho, Gilberto Menezes; Pereira-Filho, Guilherme Henrique; de Moura, Rodrigo Leão; Thompson, Fabiano Lopes; Sumida, Paulo Yukio Gomes; Francini-Filho, Ronaldo Bastos

    2016-03-01

    Mesophotic reef fish assemblages (30-90 m depth) of the small and remote St. Peter and St. Paul's Archipelago (SPSPA), Mid-Atlantic Ridge, Brazil, were characterized using remotely operated vehicles. Ordination analyses identified distinct fish assemblages in the upper (30-50 m) and lower (50-90 m) mesophotic zones, the former characterized by high abundances of species that are also abundant at euphotic reefs ( Caranx lugubris, Melichthys niger, Stegastes sanctipauli and Chromis multilineata) and the latter dominated by two mesophotic specialists ( Prognathodes obliquus and Chromis enchrysura). Planktivores dominated fish assemblages, particularly in the upper mesophotic zone, possibly due to a greater availability of zooplankton coming from the colder Equatorial Undercurrent in mesophotic depths of the SPSPA. Turf algae, fleshy macroalgae and scleractinian corals dominated benthic assemblages between 30 and 40 m depth, while bryozoans, black corals and sponges dominated between 40 and 90 m depth. Canonical correspondence analysis explained 74 % of the relationship between environmental characteristics (depth, benthic cover and complexity) and structure of fish assemblages, with depth as the most important independent variable. Juveniles of Bodianus insularis and adults of P. obliquus and C. enchrysura were clearly associated with branching black corals ( Tanacetipathes spp.), suggesting that black corals play key ecological roles in lower mesophotic reefs of the SPSPA. Results from this study add to the global database about mesophotic reef ecosystems (MREs) and provide a baseline for future evaluations of possible anthropogenic and natural disturbances on MREs of the SPSPA.

  4. Demersal fish distribution and habitat use within and near Baltimore and Norfolk Canyons, U.S. Middle Atlantic Slope

    Science.gov (United States)

    Ross, Steve W.; Rhode, Mike; Quattrini, Andrea M.

    2015-01-01

    Numerous submarine canyons along the United States middle Atlantic continental margin support enhanced productivity, diverse and unique habitats, active fisheries, and are vulnerable to various anthropogenic disturbances. During two cruises (15 Aug–2 Oct 2012 and 30 Apr–27 May 2013), Baltimore and Norfolk canyons and nearby areas (including two cold seeps) were intensively surveyed to determine demersal fish distributions and habitat associations. Overall, 34 ROV dives (234–1612 m) resulted in 295 h of bottom video observations and numerous collections. These data were supplemented by 40, 30-min bottom trawl samples. Fish observations were assigned to five general habitat designations: 1) sand-mud (flat), 2) sloping sand-mud with burrows, 3) low profile gravel, rock, boulder, 4) high profile, canyon walls, rocks or ridges, and 5) seep-mixed hard and soft substrata, the later subdivided into seven habitats based on amounts of dead mussel and rock cover. The influence of corals, sponges and live mussels (seeps only) on fish distributions was also investigated. Both canyon areas supported abundant and diverse fish communities and exhibited a wide range of habitats, including extensive areas of deep-sea corals and sponges and two nearby methane seeps (380–430 m, 1455–1610 m). All methods combined yielded a total of 123 species of fishes, 12 of which are either new records for this region or have new range data. Depth was a major factor that separated the fish faunas into two zones with a boundary around 1400 m. Fishes defining the deeper zone included Lycodes sp.,Dicrolene introniger, Gaidropsaurus ensis, Hydrolagus affinis, Antimora rostrata, andAldrovandia sp. Fishes in the deep zone did not exhibit strong habitat affinities, despite the presence of a quite rugged, extensive methane seep. We propose that habitat specificity decreases with increasing depth. Fishes in the shallower zone, characterized by Laemonema sp., Phycis chesteri, Nezumia bairdii, Brosme

  5. Fish parasites in the bathyal zone: The halosaur Halosauropsis macrochir (Günther, 1878) from the Mid-Atlantic Ridge

    Science.gov (United States)

    Klimpel, S.; Palm, H. W.; Busch, M. W.; Kellermanns, E.

    2008-01-01

    A total of 42 Halosauropsis macrochir from a single position on the Mid-Atlantic Ridge (MAR) were collected for studies on parasites and feeding ecology. A total of 9 different parasite species were found, with most of them belonging to the Digenea (4 species) and Nematoda (3). The host specific Degeneria halosauri, (Digenea) and Cystidicolidae indet. (Nematoda) were the predominant species, reaching a prevalence of 100.0% and 57.1% with intensities of infection of 1-12 and 1-10, respectively. Less host specific parasites such as Gonocerca phycidis (Digenea) and Tetraphyllidea indet. (Cestoda) occurred at low rates of infection. The parasite fauna of this bathyal fish can be described as predominantly adult and host specific, with larval and less host specific components. A total of 16 different food groups were identified, most of them of benthic origin or associated with the benthopelagial. The predominant prey organisms belonged to the Crustacea (e.g., Copepoda, Gammaridea, Amphipoda and Isopoda), which serve as main parasite vectors for H. macrochir. This deep-sea fish seems to follow a general pattern of fish parasites in the deep sea, with most isolated parasites belonging to the digeneans, nematodes and a cestode. The parasite composition is caused by the narrow depth range of the species and the restricted distribution of the fish family Halosauridae. The species richness was found to be lower than other demersal fish from the deep sea and shallow waters, however, higher than those from deep-sea fish living in the pelagial.

  6. Using recall surveys to estimate harvest of cod, eel and sea migrating brown trout in Danish angling and recreational passive gear fishing

    DEFF Research Database (Denmark)

    Sparrevohn, Claus Reedtz; Nielsen, Jan; Storr-Paulsen, Marie

    , as all recreational fishermen have to purchase a personal non-transferable and time limited national license before fishing. However, this list will not include those fishing illegally without a license. Therefore, two types of recall surveys with their own questionnaires and group of respondents were......Recreational fishing is a popular outdoor leisure activity in Europe but the actual impact on the targeted stocks is often unknown. Besides angling, marine recreational fishing in Denmark is practiced using passive gear, such as gill- and fykenets. A list of participants is updated continuously...... per ICES area and quarter. In order to also estimate the fraction of fishermen that fished without a valid license, a second survey, called – the Omnibus survey-, was carried out four times. This survey targeted the entire Danish population between 16 and 74 of age...

  7. Association between nematode Hysterothylacium aduncum invasion of cod larvae and growth

    DEFF Research Database (Denmark)

    Mehrdana, Foojan; Bahlool, Qusay Z. M.; Kuhn, Jesper;

    invertebrates and fish species and for some species also higher vertebrate hosts. We have recently demonstrated that fry of North Sea cod has a high prevalence of infection with regard to the nematode Hysterothylacium aduncum and it was indicated that these infections could affect survival of cod and thereby...... affect the cod stock in the North Sea. The objective of the present study was to elucidate if infections are associated with a decrease or an increase of fish size when examining fish of the same age. We investigated effects of H. aduncum infections on the growth rate of cod larvae by using the otolith...... reading method. In our study, the prevalence of infection with H. aduncum in North Sea cod Gadus morhua larvae was studied during the years 1992-2001. A subsample of 65 cod was selected based on the body length (range 20 to 45 mm) with 32 infected and 33 uninfected fishes. For ageing the cod larvae...

  8. Longitudinal use of feeding resources and distribution of fish trophic guilds in a coastal Atlantic stream, southern Brazil

    Directory of Open Access Journals (Sweden)

    Luciano Lazzarini Wolff

    Full Text Available This study described the use of food resources and the distribution of fish trophic guilds along the longitudinal gradient of a coastal Atlantic stream, southern Brazil. Allochthonous resources (terrestrial insects predominated in the headwaters, whereas autochthonous food items (algae, fish and detritus predominated in the mouth section. Detritivorous, aquaticinvertivorous, and terrestrial- and aquatic-insectivorous species occurred throughout the gradient, while omnivorous and piscivorous in the headwaters and middle stretches, respectively, and herbivorous in the middle and mouth. Detritivores and aquatic-insectivores were significantly more specialized than the other guilds, however, there was no evidence of a longitudinal increase in trophic specialization. Density and biomass of aquatic-invertivores and aquatic-insectivores decreased, whereas that of detritivores increased longitudinally. The distribution of trophic guilds was significantly associated with the stream section, where aquatic and terrestrial insectivorous were more frequent in rocky and flowed stretches from the headwater and detritivores in deeper environments with finer particles of substrate from the mouth. This suggests that fish assemblages in coastal streams with a steep longitudinal gradient may follow patterns in the use of food resources according with the food availability along the river, as predicted by the River Continuum Concept.

  9. Improved primer sequences for the mitochondrial ND1, ND3/4 and ND5/6 segments in salmonid fishes : application to RFLP analysis of Atlantic salmon

    DEFF Research Database (Denmark)

    Eg Nielsen, Einar; Hansen, Michael Møller; Mensberg, Karen-Lise Dons

    1998-01-01

    New specific primers for the mtDNA segments ND1, ND3/4 and ND5/6 designed from the rainbow trout sequence, improved PCR amplification for salmonid fishes. RFLP analysis revealed restriction site variation for all three segments in Atlantic salmon. Eleven haplotypes were detected in a screening...

  10. 76 FR 77806 - International Affairs; U.S. Fish Quotas in the Northwest Atlantic Fisheries Organization...

    Science.gov (United States)

    2011-12-14

    ... metric tons) of 2012 U.S. fishing opportunities, as found in Annexes I.A, I.B, and I.C of the 2011 NAFO... facilities/personnel; the use of U.S. fishing personnel; marketing of the product in the United States;...

  11. 76 FR 72678 - Atlantic Highly Migratory Species; Exempted Fishing, Scientific Research, Display, and Chartering...

    Science.gov (United States)

    2011-11-25

    ... 2012, for bycatch reduction research in closed areas of the Atlantic Ocean, Gulf of Mexico, and... issued for research related to the Deepwater Horizon/BP oil spill in the Gulf of Mexico. In 2011, seven permits were issued for research related to the oil spill in the Gulf of Mexico. ] Table 1--Summary of HMS...

  12. Egg and larval distributions of seven fish species in north-east Atlantic waters

    NARCIS (Netherlands)

    Ibaibarriaga, L.; Irigoien, X.; Santos, M.; Eltink, A.T.G.W.

    2007-01-01

    The distribution of egg and larvae of mackerel, horse mackerel, sardine, hake, megrim, blue whiting and anchovy along the European Atlantic waters (south Portugal to Scotland) during 1998 is described. Time of the year, sea surface temperature and bottom depth are used to define the spawning habitat

  13. Stakeholder participation in the management of North East Atlantic pelagic fish stocks

    DEFF Research Database (Denmark)

    Coers, Aukje; Raakjær, Jesper; Olesen, Christian

    2012-01-01

    well functioning management framework, which has lead to the situation that most pelagic fish stocks are harvested biologically sustainable. While a majority of Europe's fish stocks still need rebuilding, and the main aim accordingly is to reduce fishing mortality, the current focus for pelagic fish...... stocks is to improve the performance of already implemented Long Term Management plans in terms of their biological as well as social and economical objectives. This paper reflects upon experiences of the Pelagic Regional Advisory Council (PRAC) in its role as advisor to the EU institutions. Subsequently...... floor. For this reason, as well as the fact that they are usually widely distributed, researching and managing this dynamic group of fishes across the borders of many countries requires a unique approach. Fortunately, despite these complexities, policy makers have succeeded to establish a reasonably...

  14. Marine fronts are important fishing areas for demersal species at the Argentine Sea (Southwest Atlantic Ocean)

    Science.gov (United States)

    Alemany, Daniela; Acha, Eduardo M.; Iribarne, Oscar O.

    2014-03-01

    The high primary and secondary production associated with frontal systems attract a diversity of organisms due to high prey availability; this is why a strong relationship between fronts and pelagic fisheries has been shown worldwide. In the Argentine Sea, demersal resources are the most important, both in economical and in ecological sense; so we hypothesize that fronts are also preferred fishing areas for demersal resources. We evaluated the relationship between spatial distribution of fishing effort and oceanographic fronts, analyzing three of the most important frontal systems located in the Argentine Sea: the shelf-break front, the southern Patagonia front and the mid-shelf front. Individual vessel satellite monitoring system data (VMS; grouped by fleet type: ice-trawlers, freezer-trawlers and jigging fleet) were studied and fishing events were identified. Fishing events per area were used as a proxy of fishing effort and its spatial distribution by fleet type was visualized and analyzed with Geographic Information Systems. Oceanographic fronts were defined using polygons based on satellite chlorophyll amplitude values, and the percentage of fishing events within each polygon was calculated. Results showed a positive association between fronts and fishing activities of the different fleets, which suggests the aggregation of target species in these zones. The coupling of the freezer-trawler and jigging fleets (that operate on lower trophic level species; Macruronus magellanicus and Illex argentinus respectively) with fronts was higher than the ice-trawler fleet, targeting species of higher trophic level (Merluccius hubbsi). Marine fronts represent important fishing areas, even for demersal resources, as the distribution of fishing fleets and fishing effort are positively associated with frontal zones.

  15. Could seals prevent cod recovery in the Baltic Sea?

    Directory of Open Access Journals (Sweden)

    Brian R MacKenzie

    Full Text Available Fish populations are increasingly affected by multiple human and natural impacts including exploitation, eutrophication, habitat alteration and climate change. As a result many collapsed populations may have to recover in ecosystems whose structure and functioning differ from those in which they were formerly productive and supported sustainable fisheries. Here we investigate how a cod (Gadus morhua population in the Baltic Sea whose biomass was reduced due to a combination of high exploitation and deteriorating environmental conditions might recover and develop in the 21st century in an ecosystem that likely will change due to both the already started recovery of a cod predator, the grey seal Halichoerus grypus, and projected climate impacts. Simulation modelling, assuming increased seal predation, fishing levels consistent with management plan targets and stable salinity, shows that the cod population could reach high levels well above the long-term average. Scenarios with similar seal and fishing levels but with 15% lower salinity suggest that the Baltic will still be able to support a cod population which can sustain a fishery, but biomass and yields will be lower. At present knowledge of cod and seal interactions, seal predation was found to have much lower impact on cod recovery, compared to the effects of exploitation and salinity. These results suggest that dual management objectives (recovery of both seal and cod populations are realistic but success in achieving these goals will also depend on how climate change affects cod recruitment.

  16. Using recall surveys to estimate harvest of cod, eel and sea migrating brown trout in Danish angling and recreational passive gear fishing

    DEFF Research Database (Denmark)

    Sparrevohn, Claus Reedtz; Nielsen, Jan; Storr-Paulsen, Marie

    , as all recreational fishermen have to purchase a personal non-transferable and time limited national license before fishing. However, this list will not include those fishing illegally without a license. Therefore, two types of recall surveys with their own questionnaires and group of respondents were...... carried out. The first survey - the license list survey – was carried out once in 2009 and twice in 2010. This survey had a sampling frame corresponding to the list of persons that had purchased a license within the last 12 months. Respondents were asked to provide detailed information on catch and effort...... per ICES area and quarter. In order to also estimate the fraction of fishermen that fished without a valid license, a second survey, called – the Omnibus survey-, was carried out four times. This survey targeted the entire Danish population between 16 and 74 of age...

  17. Fishes associated with spinner dolphins at Fernando de Noronha Archipelago, tropical Western Atlantic: an update and overview

    Directory of Open Access Journals (Sweden)

    Ivan Sazima

    2006-12-01

    Full Text Available An update is presented for fish species associated with spinner dolphins at Fernando de Noronha Archipelago, tropical Western Atlantic, providing a general view of their diversity. The associates are mostly reef-dwelling fishes that feed on the dolphin wastes. Twelve species are habitual or occasional plankton-eaters and two species are herbivores that occasionally forage on floating pieces of algae. One species is a strict carnivore, one species is a hitchhiker that forages on a variety of foods including parasites and dead tissue from the dolphins, and one species is a carnivore that joins the dolphin groups to forage on schools of small fishes or squids. We predict that the list of fish associated with spinner dolphins will expand mostly with addition of habitual or occasional plankton-eaters.Uma atualização é apresentada sobre as espécies de peixes associados a golfinhos-rotadores no Arquipélago de Fernando de Noronha, Atlântico Ocidental, fornecendo uma visão geral sobre sua diversidade. Os peixes associados são principalmente habitantes recifais que se alimentam de dejetos dos golfinhos. Doze espécies são planctófagas habituais ou ocasionais e duas são herbívoras que se alimentam ocasionalmente de algas à deriva. Uma espécie é carnívora estrita, uma vive fixada aos golfinhos e seu alimento é variado, incluindo parasitos e tecido morto dos golfinhos, e uma é carnívora que se junta aos grupos de golfinhos durante a caça a peixes e lulas. Prevemos que a lista de peixes associados a golfinhos-rotadores seja expandida principalmente com adição de planctófagos habituais ou ocasionais.

  18. Fish Biodiversity Of The Vitória-trindade Seamount Chain, Southwestern Atlantic: An Updated Database.

    OpenAIRE

    Pinheiro, Hudson T.; Eric Mazzei; Moura, Rodrigo L.; Amado-Filho, Gilberto M.; Alfredo Carvalho-Filho; Braga, Adriana C.; Paulo A. S. Costa; Ferreira,Beatrice P.; Carlos Eduardo L Ferreira; Floeter, Sergio R.; Francini-Filho, Ronaldo B.; João Luiz Gasparini; Macieira, Raphael M.; Martins, Agnaldo S.; George Olavo

    2015-01-01

    Despite a strong increase in research on seamounts and oceanic islands ecology and biogeography, many basic aspects of their biodiversity are still unknown. In the southwestern Atlantic, the Vitoria-Trindade Seamount Chain (VTC) extends ca. 1,200 km offshore the Brazilian continental shelf, from the Vitoria seamount to the oceanic islands of Trindade and Martin Vaz. For a long time, most of the biological information available regarded its islands. Our study presents and analyzes an extensive...

  19. Lobster and cod benefit from small-scale northern marine protected areas: inference from an empirical before-after control-impact study.

    Science.gov (United States)

    Moland, Even; Olsen, Esben Moland; Knutsen, Halvor; Garrigou, Pauline; Espeland, Sigurd Heiberg; Kleiven, Alf Ring; André, Carl; Knutsen, Jan Atle

    2013-03-07

    Marine protected areas (MPAs) are increasingly implemented as tools to conserve and manage fisheries and target species. Because there are opportunity costs to conservation, there is a need for science-based assessment of MPAs. Here, we present one of the northernmost documentations of MPA effects to date, demonstrated by a replicated before-after control-impact (BACI) approach. In 2006, MPAs were implemented along the Norwegian Skagerrak coast offering complete protection to shellfish and partial protection to fish. By 2010, European lobster (Homarus gammarus) catch-per-unit-effort (CPUE) had increased by 245 per cent in MPAs, whereas CPUE in control areas had increased by 87 per cent. Mean size of lobsters increased by 13 per cent in MPAs, whereas increase in control areas was negligible. Furthermore, MPA-responses and population development in control areas varied significantly among regions. This illustrates the importance of a replicated BACI design for reaching robust conclusions and management decisions. Partial protection of Atlantic cod (Gadus morhua) was followed by an increase in population density and body size compared with control areas. By 2010, MPA cod were on average 5 cm longer than in any of the control areas. MPAs can be useful management tools in rebuilding and conserving portions of depleted lobster populations in northern temperate waters, and even for a mobile temperate fish species such as the Atlantic cod.

  20. Puberty in male atlantic cod (Gadus morhua)

    NARCIS (Netherlands)

    Almeida, F.F.L.

    2009-01-01

    Puberty is the process by which a juvenile acquires for the first time the capacity to reproduce sexually, a critical basis for the conservation of a species. In general, the biological processes constituting the first gonadal maturation and the mechanisms involved in this process are similar among

  1. Reef fish structure and distribution in a south-western Atlantic Ocean tropical island.

    Science.gov (United States)

    Pinheiro, H T; Ferreira, C E L; Joyeux, J-C; Santos, R G; Horta, P A

    2011-12-01

    The community structure of the reef fish fauna of Trindade Island, a volcanic oceanic island located 1160 km off the coast of Brazil, is described based on intensive visual censuses. Seventy-six species were encountered in 252 censuses, with mean ± S.E. of 99 ± 3 individuals and 15.7 ± 0.3 species 40 m(-2) transect. The average fish biomass, calculated from length-class estimation, was 22.1 kg 40 m(-2) transect. The species contributing most to biomass were, in decreasing order, Melichthys niger, Cephalopholis fulva, Kyphosus spp., Holocentrus adscensionis, Sparisoma amplum, Sparisoma axillare, Acanthurus bahianus and Epinephelus adscensionis. Carnivorous fishes were the largest trophic group in terms of biomass, followed by omnivores and roving herbivores. The two predominant types of reef habitat, fringing reefs built by coralline algae and rocky reefs made of volcanic boulders, showed significant differences in the biomass and the abundance of the trophic guilds. Within each habitat type, significant differences in species richness, density and biomass were detected among crest, slope and interface zones. Although similar in overall species composition to coastal reefs in Brazil, the fish fauna of Trindade Island shares certain characteristics, such as a high abundance of planktivores, with other Brazilian oceanic islands. Despite comparatively high fish biomass, including the macro-carnivorous species habitually targeted by fisheries, signs of overfishing were evident. These findings highlight the urgency for a conservation initiative for this isolated, unique and vulnerable reef system.

  2. Bathyal demersal fishes of Charlie Gibbs Fracture Zone region (49-54°N) of the Mid-Atlantic Ridge, I: Results from trawl surveys

    Science.gov (United States)

    Cousins, Nicola J.; Shields, Mark A.; Crockard, Deborah; Priede, Imants G.

    2013-12-01

    Demersal fishes were sampled by single-warp otter trawl (OTSB) at three sites on the Mid-Atlantic Ridge (MAR), to the northeast (NE), northwest (NW) and southeast (SE) of the Charlie-Gibbs Fracture Zone at approximately 2500 m depth. The mean abundance was 4109 fish km-2 (SD 3714) and biomass 897.1 kg km-2 (SD 842.9) compared with 1996 fish km-2 (SD 1497) and 721.2 kg km-2 (SD 387) at the same depth on the Porcupine Seabight (PSB) segment of the NE Atlantic Ocean margin from previous studies. There was no significant difference in biomass or abundance between the three sites on the MAR, nor in comparison with the ocean margin. A total of fish 22 species were recorded at the three MAR sites with evidence of highest species richness at the SE site. No unique species were found on the ridge; but there were differences in species composition between the PSB and the MAR. Coryphaenoides brevibarbis and Antimora rostrata were important at both the NE and NW trawl sites on the MAR whereas Halosauropsis macrochir was most important in the SE. We conclude that the MAR is an important habitat for species otherwise confined to narrow strips of appropriate depth around the North Atlantic Ocean margins. The MAR supports similar population densities to ocean margin settings but with differences in relative importance of different species between regions.

  3. The impact of wildfire on stream fishes in an Atlantic-Mediterranean climate: evidence from an 18-year chronosequence

    Directory of Open Access Journals (Sweden)

    Monaghan K.A.

    2016-01-01

    Full Text Available The predicted increase in wildfires associated with climate change poses a risk to freshwater biodiversity that may be exacerbated by river regulation. We studied the effects of wildfire and river management on the fish assemblages of Atlantic-Mediterranean streams in northern Portugal. Employing a chronosquence survey covering an 18-year gradient of impact-recovery from major fire events (ca. 100% catchment burnt, we assessed the ecological response with respect to time since wildfire, interpreting fish assemblages in the context of species traits and characteristics of the river habitat. Non-burnt sites (N = 18; surveyed 4 years previously were compared to burnt sites (N = 14, two of which were part of the non-burnt set, thus providing a Before-After Impact comparison (BAI; N = 2. Across burnt sites richness and abundance were not related to time since wildfire. BAI revealed a contrast in the response of different species that corresponded to descriptive evidence from the chronosequence of burnt sites. As resource specialists, Salmo trutta were negatively impacted by wildfire; Iberian endemic cyprinids, characterized by generalist traits, demonstrated resistance. Habitat structure was a key determinant of wildfire-impact, increasing with channel slope and the degree of channelization. The low abundance of migratory taxa (S. trutta and Anguilla anguilla at burnt sites suggested the importance of fish mobility to post-fire recovery. These data demonstrate that trait profiles and habitat descriptions provide pragmatic information for the management of rivers in fire-susceptible regions and suggest that the rehabilitation of these upland stream habitats might enhance ecological resistance and resilience to catchment wildfire.

  4. The ecological significance of juvenile Diplodus sargus as ectoparasite fish cleaners in the north-eastern Atlantic

    Directory of Open Access Journals (Sweden)

    José Neto

    2015-11-01

    Full Text Available Cleaning behaviour was recently described for the omnivorous species Diplodus sargus. Although previous studies have reported the existence of ectoparasites in the stomach contents of some individuals this commercially important fish was never considered a cleaner species. Here we make the first characterization of this behaviour based on field observations. This behaviour was exclusively performed by juvenile D. sargus and, until now, was only observed in confined or semi-confined areas such as coastal lagoons or harbours. Unexpectedly, cleaning rates and the number of individuals performing this behaviour largely exceeds the ones described for a sympatric cleaner fish (13.98 cleaning events/individual/hour compared to 5.08 in Centrolabrus exoletus. Clients belong to several fish families (e.g. Mugilidae, Sparidae and Labridae that include some of the most common species in coastal habitats. Frequently, clients request cleaning by tilting their body or remaining motionless near the surface while being cleaned (40% however, in most cases, the interaction ends because clients flee (46%. This could mean that D. sargus is also feeding on mucus and/or living tissue. These shifts between exploitation and cooperation have been frequently described for tropical reef species. Our results support cooperative behaviour, with a clear correlation between the number of nips per cleaning event or the number of nips to which the client reacted positively and cleaning event duration (n=552; Spearman correlation r=0.79, p<0.001; r=0.76, p<0.001, respectively. Furthermore, no correlation was detected between the number of jolts by the client fish and the cleaning event duration (n=552; Spearman correlation r=0.07, p=0.105 meaning that jolting does not increase with increased interaction time. In the future, the evaluation of the ecological importance of D. sargus as a cleaner species in the North-Eastern Atlantic, should proceed with field observations in

  5. The effect of electric pulse stimulation to juvenile cod and cod of commercial landing size

    NARCIS (Netherlands)

    Haan, de D.; Fosseidengen, J.E.; Fjelldal, P.G.; Burggraaf, D.

    2011-01-01

    The first pilot study on the effects of electric pulse stimulation on larger cod carried out in 2008 was based on a single nominal setting of the Verburg-Holland UK153 pulse system with the intention to determine the range of pulse characteristics with which injuries to the fish occurred. This study

  6. 75 FR 75458 - Atlantic Highly Migratory Species; Exempted Fishing, Scientific Research, Display, and Chartering...

    Science.gov (United States)

    2010-12-03

    ... permits that were issued for research related to the Deepwater Horizon/BP oil spill in the Gulf of Mexico... fishing program have been issued for research related to the oil spill in the Gulf of Mexico. Table 1... research related to the Deepwater Horizon/BP oil spill research in the Gulf of Mexico. Final decisions on...

  7. Species Profile: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Mid-Atlantic): Bluefish

    Science.gov (United States)

    1989-02-01

    routes of bluefish of these (Lassiter 1962).’ Fertilization is two populations older than 1 year. external; eggs and sperm are shed into The figures are...bluefish Pomatomus Pileggi, J., and B.G. Thompson. 1978. saltatrix intestine. J. Fish.Re~s. Fishery statistics of the United Boar -d -•ai. 29(3):333-336

  8. Causes and projections of abrupt climate-driven ecosystem shifts in the North Atlantic

    DEFF Research Database (Denmark)

    Beaugrand, G.; Edwards, M.; Brander, Keith

    2008-01-01

    Warming of the global climate is now unequivocal and its impact on Earth' functional units has become more apparent. Here, we show that marine ecosystems are not equally sensitive to climate change and reveal a critical thermal boundary where a small increase in temperature triggers abrupt...... ecosystem shifts seen across multiple trophic levels. This large-scale boundary is located in regions where abrupt ecosystem shifts have been reported in the North Atlantic sector and thereby allows us to link these shifts by a global common phenomenon. We show that these changes alter the biodiversity...... and carrying capacity of ecosystems and may, combined with fishing, precipitate the reduction of some stocks of Atlantic cod already severely impacted by exploitation. These findings offer a way to anticipate major ecosystem changes and to propose adaptive strategies for marine exploited resources such as cod...

  9. Proxy measures of fitness suggest coastal fish farms can act as population sources and not ecological traps for wild gadoid fish.

    Directory of Open Access Journals (Sweden)

    Tim Dempster

    Full Text Available BACKGROUND: Ecological traps form when artificial structures are added to natural habitats and induce mismatches between habitat preferences and fitness consequences. Their existence in terrestrial systems has been documented, yet little evidence suggests they occur in marine environments. Coastal fish farms are widespread artificial structures in coastal ecosystems and are highly attractive to wild fish. METHODOLOGY/PRINCIPAL FINDINGS: To investigate if coastal salmon farms act as ecological traps for wild Atlantic cod (Gadus morhua and saithe (Pollachius virens, we compared proxy measures of fitness between farm-associated fish and control fish caught distant from farms in nine locations throughout coastal Norway, the largest coastal fish farming industry in the world. Farms modified wild fish diets in both quality and quantity, thereby providing farm-associated wild fish with a strong trophic subsidy. This translated to greater somatic (saithe: 1.06-1.12 times; cod: 1.06-1.11 times and liver condition indices (saithe: 1.4-1.8 times; cod: 2.0-2.8 times than control fish caught distant from farms. Parasite loads of farm-associated wild fish were modified from control fish, with increased external and decreased internal parasites, however the strong effect of the trophic subsidy overrode any effects of altered loads upon condition. CONCLUSIONS AND SIGNIFICANCE: Proxy measures of fitness provided no evidence that salmon farms function as ecological traps for wild fish. We suggest fish farms may act as population sources for wild fish, provided they are protected from fishing while resident at farms to allow their increased condition to manifest as greater reproductive output.

  10. Feeding opportunities of larval and juvenile cod (Gadus morhua) in a Greenlandic fjord: temporal and spatial linkages between cod and their preferred prey

    DEFF Research Database (Denmark)

    Swalethorp, Rasmus; Kjellerup, Sanne; Malanski, Evandro;

    2014-01-01

    preferences of the early-life stages of Atlantic cod (Gadus morhua) to quantify the availability of prey during a spring-summer season in a West Greenlandic fjord. We hypothesized that abundances of larval and juvenile cod at size were synchronized to optimal availability of preferred prey in space and time....... The present analysis is based on nine cruises each covering 5 stations visited between 24 May and 5 August 2010 comparing zooplankton abundance, cod gut content and distribution patterns. Cod 4–25 mm in length preferred prey of about 5 % of their own length. During ontogeny, their preferences changed from...

  11. Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (South Atlantic). Striped Bass

    Science.gov (United States)

    1989-12-01

    the sides (Werner 1980). Osteological vomer and paiatines (Hardy 1978). differences are also evident in the three species (Woolcott 1957; Harrell 1984...Percichthyidae) by means of osteological patterns, meristics and Holland, B.F., Jr., and G.F. Yelverton. 1973. morphometrics. Ph.D. Dissertation. Uni...1957. Comparative osteology Striped Bass Subcommittee of the House of of serranid fishes of the genus Roccus Representatives. 9 pp. (Mitchill). Copeia

  12. Hydrolysis of acyl-homogeneous and fish oil triacylglycerols using desalted midgut extract from atlantic salmon, Salmo salar.

    Science.gov (United States)

    Bogevik, A S; Oxley, A; Olsen, R E

    2008-07-01

    Despite several studies aimed at evaluating the positional and fatty acid specificity of fish triacylglycerol (TAG) digestive lipases, there is still much uncertainty regarding these issues. The aim of the present study was therefore to address these questions in Atlantic salmon (Salmo salar L.). Crude luminal midgut extracts were collected from fed salmon and the hydrolysis studied for various substrates including triolein (Tri-18:1), trilinolein (Tri-18:2), trilinolenin (Tri-18:3), trieicosapentaenoin (Tri-20:5), tridocosahexaenoin (Tri-22:6) and natural fish oil TAG. Using Tri-18:1, in a time-curve model showed an initial high degree of sn-1 or sn-3 specificity where sn-1,2(2,3)-diacylglycerol (1,2(2,3)-DAG) and free fatty acid (FFA) were the main hydrolytic products up to 15 min. Lack of initial sn-2 specificity was confirmed by negligible sn-1,3-diacylglycerol (1,3-DAG) being produced. During the further hydrolysis of DAG, all positions appeared susceptible to attack causing a concomitantly small increase in sn-1(3)-monoacylglycerol (1(3)-MAG) and 2-MAG, but not at the level expected for an exclusively sn-1,3-specific lipase. Oleic acid (18:1n-9) and eicosapentaenoic acid (20:5n-3) were preferred substrates for hydrolysis using both fish oil and acyl-homogeneous TAGs with FFA as the main product of lipolysis. Hydrolysis of the natural fish oil TAG appeared slower yet produced proportionally more MAG and DAG after 5 min, and similar specificities, as for synthetic TAG substrates, were exhibited with 18:1n-9 and 20:5n-3 accumulating in the FFA fraction after 30 min. Notably, 16:0 was particularly conserved in MAG. As TAG resynthesis of absorbed lipid in salmon enterocytes proceeds preferably with 2-MAG as templates, the absorption of 2-MAG, produced during initial stages of TAG hydrolysis, would need to occur rapidly to be effectively utilised via the MAG pathway.

  13. Modelling axisymmetric cod-ends made of different mesh types

    DEFF Research Database (Denmark)

    Priour, D.; Herrmann, Bent; O'Neill, F.G.

    2009-01-01

    Cod-ends are the rearmost part of trawl fishing gears. They collect the catch, and for many important species it is where fish selection takes place. Generally speaking they are axisymmetric, and their shape is influenced by the catch volume, the mesh shape, and the material characteristics. The ...

  14. Regime shifts, resilience and recovery of a cod stock

    DEFF Research Database (Denmark)

    Lindegren, Martin; Diekmann, Rabea; Möllmann, Christian

    2010-01-01

    In the North and Baltic seas Atlantic cod Gadus morhua stocks collapsed as part or one of the major factors inducing large-scale ecosystem regime shifts. Determining the relative contribution of overfishing and climate variability in causing these shifts has proven difficult. While facing similar...

  15. Cloning and functional characterisation of a peroxiredoxin 1 (NKEF A) cDNA from Atlantic salmon (Salmo salar) and its expression in fish infected with Neoparamoeba perurans.

    Science.gov (United States)

    Loo, Grace H; Sutton, Drew L; Schuller, Kathryn A

    2012-06-01

    Peroxiredoxin 1 (Prx 1), also known as natural killer enhancing factor A (NKEF A), has been implicated in the immune response of both mammals and fish. Amoebic gill disease (AGD), caused by Neoparamoeba perurans, is a significant problem for the Atlantic salmon (Salmo salar L.) aquaculture industry based in Tasmania, Australia. Here we have cloned and functionally characterized a Prx 1 open reading frame (ORF) from Atlantic salmon liver and shown that Prx 1 gene expression was down-regulated in the gills of Atlantic salmon displaying symptoms of AGD. The Prx 1 ORF encoded all of the residues and motifs characteristic of typical 2-Cys Prx proteins from eukaryotes and the recombinant protein expressed in Escherichia coli catalyzed thioredoxin (Trx)-dependent reduction of H(2)O(2), cumene hydroperoxide (CuOOH) and t-butyl hydroperoxide (t-bOOH) with K(m) values of 122, 77 and 91 μM, respectively, confirming that it was a genuine 2-Cys Prx. The recombinant protein also displayed a double displacement reaction mechanism and a catalytic efficiency (k(cat)/K(m)) with H(2)O(2) of 1.5 × 10(5) M(-1) s(-1) which was consistent with previous reports for the 2-Cys Prx family of proteins. This is the first time that a Prx 1 protein has been functionally characterized from any fish species and it paves the way for further investigation of this important 2-Cys Prx family member in fish.

  16. Visual surveys can reveal rather different 'pictures' of fish densities: Comparison of trawl and video camera surveys in the Rockall Bank, NE Atlantic Ocean

    Science.gov (United States)

    McIntyre, F. D.; Neat, F.; Collie, N.; Stewart, M.; Fernandes, P. G.

    2015-01-01

    Visual surveys allow non-invasive sampling of organisms in the marine environment which is of particular importance in deep-sea habitats that are vulnerable to damage caused by destructive sampling devices such as bottom trawls. To enable visual surveying at depths greater than 200 m we used a deep towed video camera system, to survey large areas around the Rockall Bank in the North East Atlantic. The area of seabed sampled was similar to that sampled by a bottom trawl, enabling samples from the towed video camera system to be compared with trawl sampling to quantitatively assess the numerical density of deep-water fish populations. The two survey methods provided different results for certain fish taxa and comparable results for others. Fish that exhibited a detectable avoidance behaviour to the towed video camera system, such as the Chimaeridae, resulted in mean density estimates that were significantly lower (121 fish/km2) than those determined by trawl sampling (839 fish/km2). On the other hand, skates and rays showed no reaction to the lights in the towed body of the camera system, and mean density estimates of these were an order of magnitude higher (64 fish/km2) than the trawl (5 fish/km2). This is probably because these fish can pass under the footrope of the trawl due to their flat body shape lying close to the seabed but are easily detected by the benign towed video camera system. For other species, such as Molva sp, estimates of mean density were comparable between the two survey methods (towed camera, 62 fish/km2; trawl, 73 fish/km2). The towed video camera system presented here can be used as an alternative benign method for providing indices of abundance for species such as ling in areas closed to trawling, or for those fish that are poorly monitored by trawl surveying in any area, such as the skates and rays.

  17. North Atlantic Regional Water Resources Study. Appendix O. Fish and Wildlife.

    Science.gov (United States)

    1972-05-01

    Fishing and Hunting — l965—2O~ O 0—96 0—25 Economic Impact of Expenditures by Recreational Sh~ if ishermen 0—98 0—26 Ec~~r mic Impact of Expenditures by...A C ,—,I 11 $. ’ I 1 C C I S l ! l U f l 1A I I I I r l l I - C , - r m II,, C I C C C O C ,—lI TMa n — Clay. If F I , l _ I C 8 C n . ICn~~ il1

  18. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (North and Mid-Atlantic): Blue mussel

    Energy Technology Data Exchange (ETDEWEB)

    Newell, R.I.E.

    1989-06-01

    The blue mussel, Mytilus edulis L. is a widely distributed and locally abundant bivalve mollusc in the North and Mid-Atlantic Regions. It is a valuable commercial species; regional landings in 1986 were worth nearly $4 million. It is a semi-sessile species, anchored by byssus threads to firm surfaces in littoral and sub-littoral environments at salinities ranging from 5 to 35 ppt. It is a suspension feeder, ingesting phytoplankton and detrital particles in the size range of 3--30 /mu/m. The geographical range of the species is limited by lethal water temperatures above 27/degree/C in the south and by temperatures too low for growth and reproduction in the north. Animals from the northern end of the range are stressed by temperatures above 20/degree/C, whereas those near the southern distributional limit are not severely stressed by temperatures as high as 25/degree/C. The blue mussel is diecious and oviparous. The planktotrophic larvae take about 3 weeks to develop and metamorphose. The environmental tolerances of larvae are more restricted than those of adults. The juveniles grow to approximately 1.5 mm while attached to filamentous algae before being carried by water currents to reattach to a firm substrate, often close to adult mussels. Larval and adult blue mussels are important prey items for many animals, including crabs, fishes, and birds. 95 refs., 5 figs., 2 tabs.

  19. Feeding habits of the deep-sea fish, Scopelogadus beanii (Pisces: Melamphaide), in the western North Atlantic

    Science.gov (United States)

    Gartner, John V.; Musick, John A.

    1989-10-01

    Stomach contents were examined from 106 specimens (37-113 mm SL) of the melamphaid Scopelogadus beanii collected from the slope waters of the western North Atlantic Ocean by bottom and midwater trawls. Seventy-five stomachs (70.8%) contained food. Gelatinous zooplankton (mainly salps) and associated obligate and facultative symbiotic hyperiid amphipods of the genera Vibilia, Parathemisto, and Phronima were the predominant food items in the stomachs of S. beanii, although calanoid copepods (especially Paraeuchaeta norvegica) were of similar importance in individuals from offshore midwater trawls. Other pelagic prey items included halocyprid ostracods, euphausiids and fishes. Representatives from three benthic groups (gammaridean amphipods, polychaetes and pelecypods) were recovered from stomachs of specimens from bottom trawls. The only significant pattern observed in diel feeding periodicity was a decrease in the percentage of stomachs containing food between 1201 and 1800 h as compared to the percentage of stomachs containing food between 1201 and 2400 h. This observation might be an artifact, however, because no differences in degree of prey digestion were observed. Limited seasonal data from bottom-trawled collections indicate that consumption of amphipods was highest in spring, whereas that of gelatinous plankton was highest in summer and autumn. There were no apparent ontogenetic shifts in diet composition. Differences in prey importance between bottom and pelagic trawl-captured individuals may be due to vertical ranges and abundance of prey taxa and the presence of S. beanii near the bottom in continental slope waters.

  20. Between-Habitat Variation of Benthic Cover, Reef Fish Assemblage and Feeding Pressure on the Benthos at the Only Atoll in South Atlantic: Rocas Atoll, NE Brazil.

    Directory of Open Access Journals (Sweden)

    G O Longo

    Full Text Available The Southwestern Atlantic harbors unique and relatively understudied reef systems, including the only atoll in South Atlantic: Rocas atoll. Located 230 km off the NE Brazilian coast, Rocas is formed by coralline red algae and vermetid mollusks, and is potentially one of the most "pristine" areas in Southwestern Atlantic. We provide the first comprehensive and integrative description of the fish and benthic communities inhabiting different shallow reef habitats of Rocas. We studied two contrasting tide pool habitats: open pools, which communicate with the open ocean even during low tides, thus more exposed to wave action; and closed pools, which remain isolated during low tide and are comparatively less exposed. Reef fish assemblages, benthic cover, algal turfs and fish feeding pressure on the benthos remarkably varied between open and closed pools. The planktivore Thalassoma noronhanum was the most abundant fish species in both habitats. In terms of biomass, the lemon shark Negaprion brevirostris and the omnivore Melichtys niger were dominant in open pools, while herbivorous fishes (mainly Acanthurus spp. prevailed in closed pools. Overall benthic cover was dominated by algal turfs, composed of articulated calcareous algae in open pools and non-calcified algae in closed pools. Feeding pressure was dominated by acanthurids and was 10-fold lower in open pools than in closed pools. Besides different wave exposure conditions, such pattern could also be related to the presence of sharks in open pools, prompting herbivorous fish to feed more in closed pools. This might indirectly affect the structure of reef fish assemblages and benthic communities. The macroalgae Digenea simplex, which is uncommon in closed pools and abundant in the reef flat, was highly preferred in herbivory assays, indicating that herbivory by fishes might be shaping this distribution pattern. The variations in benthic and reef fish communities, and feeding pressure on the benthos

  1. Between-Habitat Variation of Benthic Cover, Reef Fish Assemblage and Feeding Pressure on the Benthos at the Only Atoll in South Atlantic: Rocas Atoll, NE Brazil.

    Science.gov (United States)

    Longo, G O; Morais, R A; Martins, C D L; Mendes, T C; Aued, A W; Cândido, D V; de Oliveira, J C; Nunes, L T; Fontoura, L; Sissini, M N; Teschima, M M; Silva, M B; Ramlov, F; Gouvea, L P; Ferreira, C E L; Segal, B; Horta, P A; Floeter, S R

    2015-01-01

    The Southwestern Atlantic harbors unique and relatively understudied reef systems, including the only atoll in South Atlantic: Rocas atoll. Located 230 km off the NE Brazilian coast, Rocas is formed by coralline red algae and vermetid mollusks, and is potentially one of the most "pristine" areas in Southwestern Atlantic. We provide the first comprehensive and integrative description of the fish and benthic communities inhabiting different shallow reef habitats of Rocas. We studied two contrasting tide pool habitats: open pools, which communicate with the open ocean even during low tides, thus more exposed to wave action; and closed pools, which remain isolated during low tide and are comparatively less exposed. Reef fish assemblages, benthic cover, algal turfs and fish feeding pressure on the benthos remarkably varied between open and closed pools. The planktivore Thalassoma noronhanum was the most abundant fish species in both habitats. In terms of biomass, the lemon shark Negaprion brevirostris and the omnivore Melichtys niger were dominant in open pools, while herbivorous fishes (mainly Acanthurus spp.) prevailed in closed pools. Overall benthic cover was dominated by algal turfs, composed of articulated calcareous algae in open pools and non-calcified algae in closed pools. Feeding pressure was dominated by acanthurids and was 10-fold lower in open pools than in closed pools. Besides different wave exposure conditions, such pattern could also be related to the presence of sharks in open pools, prompting herbivorous fish to feed more in closed pools. This might indirectly affect the structure of reef fish assemblages and benthic communities. The macroalgae Digenea simplex, which is uncommon in closed pools and abundant in the reef flat, was highly preferred in herbivory assays, indicating that herbivory by fishes might be shaping this distribution pattern. The variations in benthic and reef fish communities, and feeding pressure on the benthos between open and

  2. Cod reproductive ecology

    DEFF Research Database (Denmark)

    Røjbek, Maria

    In recent decades, Baltic cod has experienced a period of low recruitment. In the same period the pelagic Baltic Sea ecosystem experienced a regime shift, due to hydrographic changes, affecting all trophic levels. The rationale for the thesis is built on the hypothesis that the regime shift has r...

  3. Historical DNA documents long-distance natal homing in marine fish.

    Science.gov (United States)

    Bonanomi, Sara; Overgaard Therkildsen, Nina; Retzel, Anja; Berg Hedeholm, Rasmus; Pedersen, Martin Waever; Meldrup, Dorte; Pampoulie, Christophe; Hemmer-Hansen, Jakob; Grønkjaer, Peter; Nielsen, Einar Eg

    2016-06-01

    The occurrence of natal homing in marine fish remains a fundamental question in fish ecology as its unequivocal demonstration requires tracking of individuals from fertilization to reproduction. Here, we provide evidence of long-distance natal homing (>1000 km) over more than 60 years in Atlantic cod (Gadus morhua), through genetic analysis of archived samples from marked and recaptured individuals. Using a high differentiation single-nucleotide polymorphism assay, we demonstrate that the vast majority of cod tagged in West Greenland and recaptured on Icelandic spawning grounds belonged to the Iceland offshore population, strongly supporting a hypothesis of homing. The high degree of natal fidelity observed provides the evolutionary settings for development of locally adapted populations in marine fish and emphasize the need to consider portfolio effects in marine fisheries management strategies.

  4. Energy profiling of demersal fish: a case-study in wind farm artificial reefs.

    Science.gov (United States)

    De Troch, Marleen; Reubens, Jan T; Heirman, Elke; Degraer, Steven; Vincx, Magda

    2013-12-01

    The construction of wind farms introduces artificial hard substrates in sandy sediments. As Atlantic cod (Gadus morhua) and pouting (Trisopterus luscus) tend to aggregate in order to feed around these reefs, energy profiling and trophic markers were applied to study their feeding ecology in a wind farm in the Belgian part of the North Sea. The proximate composition (carbohydrates, proteins and lipids) differed significantly between liver and muscle tissue but not between fish species or between their potential prey species. Atlantic cod showed to consume more energy than pouting. The latter had a higher overall energy reserve and can theoretically survive twice as long on the available energy than cod. In autumn, both fish species could survive longer on their energy than in spring. Polyunsaturated fatty acids were found in high concentrations in fish liver. The prey species Jassa and Pisidia were both rich in EPA while Jassa had a higher DHA content than Pisidia. Energy profiling supported the statement that wind farm artificial reefs are suitable feeding ground for both fish species. Sufficient energy levels were recorded and there is no indication of competition.

  5. Salmon welfare index model 2.0: an extended model for overall welfare assessment of caged Atlantic salmon, based on a review of selected welfare indicators and intended for fish health professionals

    NARCIS (Netherlands)

    Pettersen, J.M.; Bracke, M.B.M.; Midtlyng, P.J.; Folkedal, O.; Stien, L.H.; Steffenak, H.; Kristiansen, T.S.

    2014-01-01

    Here, we present an extended version of a semantic model for overall welfare assessment of Atlantic salmon reared in sea cages. The model, called SWIM 2.0, is designed to enable fish health professionals to make a formal and standardized assessment of fish welfare using a set of reviewed welfare ind

  6. Vaccines for fish in aquaculture.

    Science.gov (United States)

    Sommerset, Ingunn; Krossøy, Bjørn; Biering, Eirik; Frost, Petter

    2005-02-01

    Vaccination plays an important role in large-scale commercial fish farming and has been a key reason for the success of salmon cultivation. In addition to salmon and trout, commercial vaccines are available for channel catfish, European seabass and seabream, Japanese amberjack and yellowtail, tilapia and Atlantic cod. In general, empirically developed vaccines based on inactivated bacterial pathogens have proven to be very efficacious in fish. Fewer commercially available viral vaccines and no parasite vaccines exist. Substantial efficacy data are available for new fish vaccines and advanced technology has been implemented. However, before such vaccines can be successfully commercialized, several hurdles have to be overcome regarding the production of cheap but effective antigens and adjuvants, while bearing in mind environmental and associated regulatory concerns (e.g., those that limit the use of live vaccines). Pharmaceutical companies have performed a considerable amount of research on fish vaccines, however, limited information is available in scientific publications. In addition, salmonids dominate both the literature and commercial focus, despite their relatively small contribution to the total volume of farmed fish in the world. This review provides an overview of the fish vaccines that are currently commercially available and some viewpoints on how the field is likely to evolve in the near future.

  7. North Atlantic demersal deep-water fish distribution and biology: present knowledge and challenges for the future.

    Science.gov (United States)

    Bergstad, O A

    2013-12-01

    This paper summarizes knowledge and knowledge gaps on benthic and benthopelagic deep-water fishes of the North Atlantic Ocean, i.e. species inhabiting deep continental shelf areas, continental and island slopes, seamounts and the Mid-Atlantic Ridge. While several studies demonstrate that distribution patterns are species specific, several also show that assemblages of species can be defined and such assemblages are associated with circulatory features and water mass distributions. In many subareas, sampling has, however, been scattered, restricted to shallow areas or soft substrata, and results from different studies tend to be difficult to compare quantitatively because of sampler differences. Particularly, few studies have been conducted on isolated deep oceanic seamounts and in Arctic deep-water areas. Time series of data are very few and most series are short. Recent studies of population structure of widely distributed demersal species show less than expected present connectivity and considerable spatial genetic heterogeneity and complexity for some species. In other species, genetic homogeneity across wide ranges was discovered. Mechanisms underlying the observed patterns have been proposed, but to test emerging hypotheses more species should be investigated across their entire distribution ranges. Studies of population biology reveal greater diversity in life-history strategies than often assumed, even between co-occurring species of the same family. Some slope and ridge-associated species are rather short-lived, others very long-lived, and growth patterns also show considerable variation. Recent comparative studies suggest variation in life-history strategies along a continuum correlated with depth, ranging from shelf waters to the deep sea where comparatively more species have extended lifetimes, and slow rates of growth and reproduction. Reproductive biology remains too poorly known for most deep-water species, and temporal variation in recruitment has

  8. Avoidance from petroleum hydrocarbons by the cod (Gadus morhua)

    OpenAIRE

    Bøhle, Bjørn

    1982-01-01

    In laboratory experiments cod was presented a choice situation between different concentrations of petroleum hydrocarbons, appearing as "water soluble fraction" and emulsified droplets derived from Fuel Oil No. 2. In most experiments, the fishes seemed to avoid water containing hydrocarbons, though some fishes for periods was indifferent also to considerable contaminated water. The over all results indicates that a majority of the fishes avoided water containing total hyd...

  9. A survey of dioxin-like contaminants in fish from recreational fishing.

    Science.gov (United States)

    Heimstad, Eldbjørg Sofie; Grønstøl, Gaute; Hetland, Karl Torstein; Alarcon, Javier Martinez; Rylander, Charlotta; Mariussen, Espen

    2015-08-01

    The dioxin and dioxin-like compounds are regarded as one of the most toxic group of environmental contaminants. Food for the commercial market is regularly monitored for their dioxin levels and the concentration allowed in food is strictly regulated. Less is known about locally caught fish from recreational fishing, which is often brought home for consumption. This can be fish caught from nearby lakes or streams or fish with marine origin close to industrial areas or harbours that are not regularly monitored for their dioxin levels. In this study, we established collaboration with schools in 13 countries. We received 203 samples of 29 different fish species of which Atlantic cod was the most abundant followed by brown trout and pollock. In general, the majority of samples from the participating countries had low concentrations (between 0.1 and 0.2 pg/g chemical-activated luciferase gene expression toxic equivalency wet weight (CALUX TEQ w.w.)) of dioxins and dioxin-like PCBs. Only 18 samples had concentrations above 1 pg/g CALUX TEQ w.w., and only 2 dab samples had concentration above maximum levels set by the European Commission. The Atlantic cod samples showed a significant reduction in the concentrations of dioxins with increasing latitude indicating less contamination of dioxin and dioxin-like compounds in the north of Norway. The results indicate that a moderate consumption of self-caught fish at presumed non-contaminated sites does not represent a major risk for exposure to dioxins or dioxin-like compounds at concentrations associated with adverse health effects. Recreational fishermen should, however, obtain knowledge about local fish consumption advice.

  10. The origins of intensive marine fishing in medieval Europe: the English evidence.

    Science.gov (United States)

    Barrett, James H.; Locker, Alison M.; Roberts, Callum M.

    2004-01-01

    The catastrophic impact of fishing pressure on species such as cod and herring is well documented. However, the antiquity of their intensive exploitation has not been established. Systematic catch statistics are only available for ca.100 years, but large-scale fishing industries existed in medieval Europe and the expansion of cod fishing from the fourteenth century (first in Iceland, then in Newfoundland) played an important role in the European colonization of the Northwest Atlantic. History has demonstrated the scale of these late medieval and post-medieval fisheries, but only archaeology can illuminate earlier practices. Zooarchaeological evidence shows that the clearest changes in marine fishing in England between AD 600 and 1600 occurred rapidly around AD 1000 and involved large increases in catches of herring and cod. Surprisingly, this revolution predated the documented post-medieval expansion of England's sea fisheries and coincided with the Medieval Warm Period--when natural herring and cod productivity was probably low in the North Sea. This counterintuitive discovery can be explained by the concurrent rise of urbanism and human impacts on freshwater ecosystems. The search for 'pristine' baselines regarding marine ecosystems will thus need to employ medieval palaeoecological proxies in addition to recent fisheries data and early modern historical records. PMID:15590590

  11. Distribution, population biology, and trophic ecology of the deepwater demersal fish Halosauropsis macrochir (Pisces: Halosauridae on the mid-Atlantic Ridge.

    Directory of Open Access Journals (Sweden)

    Odd Aksel Bergstad

    Full Text Available Halosauropsis macrochir ranked amongst the most abundant and widespread demersal fishes on the mid-Atlantic Ridge of the North Atlantic (Iceland-Azores with greatest abundance at 1700-3500 m. All sizes, ranging from 10-76 cm total length, occurred in the area without any apparent spatial pattern or depth trend. Using otolith sections displaying growth increments assumed to represent annuli, the age range recorded was 2-36 years, but most individuals were <20 years. Length and weight at age data were used to fit growth models. No differences between sexes in length and weight at age were observed. The majority of samples had a surplus of males. Diet analysis showed that H. macrochir feeds on Crustacea, Teleostei, Polychaeta, and Cephalopoda, but few prey could be identified to lower taxonomical levels. The mid-Atlantic Ridge constitutes a major portion of the North Atlantic living space of the abyssal halosaur where it completes its full life cycle, primarily as an actively foraging euryophagous micronekton/epibenthos and infauna feeder, becoming a partial piscivore with increasing size.

  12. Atlantic menhaden adult tagging study

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Atlantic menhaden are a schooling forage fish species, which are subject to a large commercial purse seine fishery. Atlantic menhaden are harvested for reduction...

  13. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Mid-Atlantic): Blue crab

    Energy Technology Data Exchange (ETDEWEB)

    Hill, J.; Fowler, D.L.; Van Den Avyle, M.J.

    1989-03-01

    Species profiles are summaries of the literature on taxonomy, life history, and environmental requirements of coastal fishes and aquatic invertebrates. They are prepared to assist with impact assessment. The blue crab, Callinectes sapidus, occurs in lower reaches of freshwater rivers, estuaries, and coastal waters along the Atlantic seaboard and Gulf of Mexico, and the species supports the largest crab fishery in the United States. Chesapeake Bay provides the greatest production of blue crabs on the east coast. The blue crab's high abundance in estuaries, diverse feeding habits, and importance as prey for other marine animals indicate its important role in the structure and function of estuarine communities. Female blue crabs spawn in high-salinity lower estuaries of coastal areas; the resulting larvae are planktonic and develop into juveniles at 5 to 10 weeks of age. Juveniles gradually migrate into shallower, less-saline upper estuaries and rivers where they grow and mature at 1-2 yr of age. Mating occurs in the upper estuaries after which females migrate to areas having higher salinities. Growth and survival of blue crabs are strongly affected by water temperature and salinity, but tolerances vary with life stage. Larvae require temperatures of 20-30/degree/C and salinities of 10-30 ppt for proper development, but salinity and temperature tolerances are broad for advanced juveniles and adults. Blue crabs use nearly all areas within estuaries as nursery habitat, and crab populations are sensitive to changes in physical features of contamination of these areas. 94 refs., 4 figs., 2 tabs.

  14. Could seals prevent cod recovery in the Baltic Sea?

    DEFF Research Database (Denmark)

    MacKenzie, Brian; Eero, Margit; Ojaveer, Henn

    2011-01-01

    Fish populations are increasingly affected by multiple human and natural impacts including exploitation, eutrophication, habitat alteration and climate change. As a result many collapsed populations may have to recover in ecosystems whose structure and functioning differ from those in which...... in an ecosystem that likely will change due to both the already started recovery of a cod predator, the grey seal Halichoerus grypus, and projected climate impacts. Simulation modelling, assuming increased seal predation, fishing levels consistent with management plan targets and stable salinity, shows...... these goals will also depend on how climate change affects cod recruitment....

  15. Putative fishery-induced changes in biomass and population size structures of demersal deep-sea fishes in ICES Sub-area VII, North East Atlantic Ocean

    Directory of Open Access Journals (Sweden)

    J. A. Godbold

    2012-08-01

    Full Text Available A time series from 1977–1989 and 2000–2002 of scientific trawl surveys in the Porcupine Seabight and adjacent Abyssal Plain of the NE Atlantic was analysed to assess changes in demersal fish biomass and length frequency. These two periods coincide with the on-set of the commercial deep-water fishery in the late 1970s and the on-set of the regulation of the fishery in the early 2000's and allowed us to investigate changes in the relationship between total demersal fish biomass and depth between the pre- and post commercial fishing periods, changes in the biomass (kg km2 depth distribution and length frequency distribution of the most dominant fish species. Our results show a decline in total demersal fish biomass of 36% within the depth range of the commercial fishery (< 1500 m. Whilst there were significant declines in target (e.g. Coryphaenoides rupestris decreased by 57% and non-target (e.g. Coryphaenoides guentheri and Antimora rostrata species, not all species declined significantly. Changes in the overall length-frequency distribution were detected for 2 species (Coryphaenoides armatus, Synaphobranchus kaupii, but only at depths greater than 1800 m (outside the maximum depth for commercial trawling. This suggests that whilst there is evidence for likely fisheries impacts on the biomass distribution of the demersal fish population as a whole, species-specific impacts are highly variable. It is clear that changes in population structure can extend beyond the depth at which fishing takes place, highlighting the importance for also considering the indirect effects on deep-sea fish populations.

  16. Putative fishery-induced changes in biomass and population size structures of demersal deep-sea fishes in ICES Sub-area VII, Northeast Atlantic Ocean

    Science.gov (United States)

    Godbold, J. A.; Bailey, D. M.; Collins, M. A.; Gordon, J. D. M.; Spallek, W. A.; Priede, I. G.

    2013-01-01

    A time series from 1977-1989 and 2000-2002 of scientific trawl surveys in the Porcupine Seabight and adjacent abyssal plain of the NE Atlantic was analysed to assess changes in demersal fish biomass and length frequency. These two periods coincide with the onset of the commercial deep-water fishery in the late 1970s and the onset of the regulation of the fishery in the early 2000's, which allowed us to investigate changes in the relationship between total demersal fish biomass and depth between the pre- and post commercial fishing periods, as well as changes in the biomass (kg km-2) depth distribution and length frequency distribution of the most dominant fish species. Our results show a decline in total demersal fish biomass of 36% within the depth range of the commercial fishery (< 1500 m). Whilst there were significant declines in target (e.g. Coryphaenoides rupestris decreased by 57%) and non-target (e.g. C. guentheri and Antimora rostrata) species, not all species declined significantly. Changes in the overall length-frequency distribution were detected for 5 out of the 8 dominant species occupying depth ranges both within and outside the maximum depth for commercial trawling. This suggests that whilst there is evidence for likely fishery impacts on the biomass distribution of the demersal fish population as a whole, species-specific impacts are highly variable. It is clear that changes in population structure can extend beyond the depth at which fishing takes place, highlighting the importance for also considering the indirect effects on deep-sea fish populations.

  17. Putative fishery-induced changes in biomass and population size structures of demersal deep-sea fishes in ICES Sub-area VII, Northeast Atlantic Ocean

    Directory of Open Access Journals (Sweden)

    J. A. Godbold

    2013-01-01

    Full Text Available A time series from 1977–1989 and 2000–2002 of scientific trawl surveys in the Porcupine Seabight and adjacent abyssal plain of the NE Atlantic was analysed to assess changes in demersal fish biomass and length frequency. These two periods coincide with the onset of the commercial deep-water fishery in the late 1970s and the onset of the regulation of the fishery in the early 2000's, which allowed us to investigate changes in the relationship between total demersal fish biomass and depth between the pre- and post commercial fishing periods, as well as changes in the biomass (kg km−2 depth distribution and length frequency distribution of the most dominant fish species. Our results show a decline in total demersal fish biomass of 36% within the depth range of the commercial fishery (< 1500 m. Whilst there were significant declines in target (e.g. Coryphaenoides rupestris decreased by 57% and non-target (e.g. C. guentheri and Antimora rostrata species, not all species declined significantly. Changes in the overall length-frequency distribution were detected for 5 out of the 8 dominant species occupying depth ranges both within and outside the maximum depth for commercial trawling. This suggests that whilst there is evidence for likely fishery impacts on the biomass distribution of the demersal fish population as a whole, species-specific impacts are highly variable. It is clear that changes in population structure can extend beyond the depth at which fishing takes place, highlighting the importance for also considering the indirect effects on deep-sea fish populations.

  18. Cycles and trends in cod populations.

    Science.gov (United States)

    Bjørnstad, O N; Fromentin, J M; Stenseth, N C; Gjøsaeter, J

    1999-04-27

    Year-to-year fluctuations in fish stocks are usually attributed to variability in recruitment, competition, predation, and changes in catchability. Trends in abundance, in contrast, are usually ascribed to human exploitation and large-scale environmental changes. In this study, we demonstrate, through statistical modeling of survey data (1921-1994) of cod from the Norwegian Skagerrak coast, that both short- and long-term variability may arise from the same set of age-structured interactions. Asymmetric competition and cannibalism between cohorts generate alternating years of high and low abundance. Intercohort interactions also resonate the recruitment variability so that long-term trends are induced. The coupling of age-structure and variable recruitment should, therefore, be considered when explaining both the short- and long-term fluctuations displayed by the coastal cod populations. Resonant effects may occur in many marine populations that exhibit this combination of traits.

  19. Detection of arsenic-containing hydrocarbons in a range of commercial fish oils by GC-ICPMS analysis

    DEFF Research Database (Denmark)

    Sele, Veronika; Amlund, Heidi; Berntssen, Marc H. G.;

    2013-01-01

    dominant arsenic-containing hydrocarbons in addition to one minor unidentified compound were detected in all the oils using GC-ICPMS. The molecular structures of the arsenic-containing hydrocarbons, dimethylarsinoyl hydrocarbons (C17H38AsO, C19H42AsO, C23H38AsO), were verified using GC coupled to tandem......The present study describes the use of a simple solid-phase extraction procedure for the extraction of arsenic-containing hydrocarbons from fish oil followed by analysis using gas chromatography (GC) coupled to inductively coupled plasma mass spectrometry (ICPMS). The procedure permitted...... of Atlantic herring, Atlantic cod (Gadus morhua) and saithe (Pollachius virens)). Total arsenic concentrations in the fish oils and in the extracts of the fish oils were determined by microwave-assisted acid digestion and ICPMS. The arsenic concentrations in the fish oils ranged from 5.9 to 8.7 mg kg-1. Three...

  20. Distribution of infectious pancreatic necrosis virus (IPNV) in wild marine fish from Scottish waters with respect to clinically infected aquaculture sites producing Atlantic salmon, Salmo salar L.

    Science.gov (United States)

    Wallace, I S; Gregory, A; Murray, A G; Munro, E S; Raynard, R S

    2008-03-01

    This study represents the first large-scale investigation of IPNV in Scottish wild marine fish. Kidney samples were taken from 30 627 fish comprising 37 species and 45 isolations were made from nine different species, illustrating these as reservoirs of IPNV in Scottish waters. The estimated prevalence of IPNV in the Scottish marine environment was low at 0.15% (90% confidence intervals, (CI) of 0.11-0.19%). This was significantly greater in fish caught less than 5.0 km from IPN-positive fish farms in Shetland, at 0.58% (90% CI of 0.45-0.77%). This prevalence persisted and did not significantly decrease over the 16-month period of study. The estimated prevalence of IPNV for each positive species was less than 1% with the statistically non-significant exceptions of flounder, Platichthys flesus (L.), at 12.5% (90% CI of 0.64-47.06%) and saithe, Pollachius virens (L.), at 1.11% (90% CI of 0.49-2.19%). The 45 isolates were titrated and all but two were below the detection limit of the test (<55 PFU g(-1)). Titres of 3.8 x 10(2) PFU g(-1) and 2.8 x 10(1) PFU g(-1) were calculated from common dab, Limanda limanda (L.), and saithe, respectively. This study provides evidence that clinical outbreaks of IPN in farmed Atlantic salmon may cause a localized small increase in the prevalence of IPNV in wild marine fish.

  1. Meta-analysis of carrying capacity and abundance-area relationships in marine fish species

    DEFF Research Database (Denmark)

    Mantzouni, Irene

    fish produced by spawners in a given year which subsequently grow and survive to become vulnerable to fishing gear) have reacted to temperature fluctuations, and in particular to extremes of temperature, throughout the north Atlantic. Meta-analytical methods based on effect sizes were employed......Knowledge on the carrying capacity and the abundance-area relationships of fish is critical to evaluate the impacts of exploitation and climate on the sustainability and also the recovery potential of the populations. Of particular interest is climate change, inducing major consequences...... for population dynamics and life histories of marine biota as it progresses in the 21st century. In the present PhD project, a variety of meta-analytic methods was employed to statistically combine data across the north Atlantic distributions of 3 commercially and ecologically important species; cod (Gadus...

  2. Waste feed from coastal fish farms: A trophic subsidy with compositional side-effects for wild gadoids

    Science.gov (United States)

    Fernandez-Jover, Damian; Martinez-Rubio, Laura; Sanchez-Jerez, Pablo; Bayle-Sempere, Just T.; Lopez Jimenez, Jose Angel; Martínez Lopez, Francisco Javier; Bjørn, Pål-Arne; Uglem, Ingebrigt; Dempster, Tim

    2011-03-01

    Aquaculture of carnivorous fish species in sea-cages typically uses artificial feeds, with a proportion of these feeds lost to the surrounding environment. This lost resource may provide a trophic subsidy to wild fish in the vicinity of fish farms, yet the physiological consequences of the consumption of waste feed by wild fish remain unclear. In two regions in Norway with intensive aquaculture, we tested whether wild saithe ( Pollachius virens) and Atlantic cod ( Gadus morhua) associated with fish farms (F assoc), where waste feed is readily available, had modified diets, condition and fatty acid (FA) compositions in their muscle and liver tissues compared to fish unassociated (UA) with farms. Stomach content analyses revealed that both cod and saithe consumed waste feed in the vicinity of farms (6-96% of their diet was composed of food pellets). This translated into elevated body and liver condition compared to fish caught distant from farms for cod at both locations and elevated body condition for saithe at one of the locations. As a consequence of a modified diet, we detected significantly increased concentrations of terrestrial-derived fatty acids (FAs) such as linoleic (18:2ω6) and oleic (18:1ω9) acids and decreased concentrations of DHA (22:6ω3) in the muscle and/or liver of F assoc cod and saithe when compared with UA fish. In addition, the ω3:ω6 ratio clearly differed between F assoc and UA fish. Linear discriminant analysis (LDA) correctly classified 97% of fish into F assoc or UA origin for both cod and saithe based on the FA composition of liver tissues, and 89% of cod and 86% of saithe into F assoc or UA origin based on the FA composition of muscle. Thus, LDA appears a useful tool for detecting the influence of fish farms on the FA composition of wild fish. Ready availability of waste feed with high protein and fat content provides a clear trophic subsidy to wild fish in coastal waters, yet whether the accompanying side-effect of altered fatty

  3. Association of Syscenus infelix (Crustacea: Isopoda: Aegidae) with benthopelagic rattail fishes, Nezumia spp. (Macrouridae), along the western North Atlantic continental slope

    Science.gov (United States)

    Ross, S.W.; Sulak, K.J.; Munroe, T.A.

    2001-01-01

    During submersible surveys along the continental slope (summers of 1991 and 1992, 184-847 m) between False Cape, Virginia, and Cape Hatteras, North Carolina, USA, we observed the aegid isopod, Syscenus infelix Harger, attached to the macrourid Nezumia bairdii (Goode and Bean). This is the first report of S. infelix attached to fishes in the western North Atlantic. The association of this blind isopod with its host appears species specific. The large, conspicuous isopod always attached to a fish in the same location, the dorsal midline, immediately behind the first dorsal fin. Attachment appears to be long term, with the isopod forming a characteristic scar consisting of a distinct discolored oval depression with seven small, dark impressions that coalesce as the fish grows. Only one S. infelix was found on each host fish. The isopod occurred on 23.7% of N. bairdii observed from submersible on the middle continental slope off Virginia and North Carolina, compared with 16.6% of 1236 museum specimens of the same species (based on inspection for scars) collected at latitudes 26??-64??N. Prevalence of the fish-isopod association was not correlated with depth or latitude. We also found identical scars on preserved specimens of N. aequalis (2.6% of 660 specimens), N. sclerorhynchus (1.2% of 86 specimens), and N. suilla (14.3% of 7 specimens), mostly from areas outside the range of N. bairdii. No scars were found on museum specimens of N. atlantica (n = 27), N. cyrano (n = 57), or N. longebarbata (n = 7). The low incidence of isopod attachment on these species suggests that N. bairdii is the preferred host. Infestation by the isopod appears to result in erosion of host fish scales and tissue. We propose that S. infelix is an obligate associate of its host fish and should be considered parasitic.

  4. Fish Species in a Changing World: The Route and Timing of Species Migration between Tropical and Temperate Ecosystems in Eastern Atlantic.

    Directory of Open Access Journals (Sweden)

    Awaluddin Halirin Kaimuddin

    2016-09-01

    Full Text Available The presence of tropical species has been reported in Atlantic-European waters with increasing frequency in recent years. Unfortunately, the history of their migrations is not well understood. In this study, we examined the routes and timing of fish migrations in several ecosystems of the East Atlantic Ocean, combining several publicly available and unpublicized datasets on species occurrences. The species studied were those noted as exotic or rare outside their previous known area of distribution. We used sea surface temperature (SST data obtained from 30 years of satellite observation to define three distinct time periods. Within these periods, temperature trends were studied in six ecosystems: the North Sea, the Celtic Sea, the South European Atlantic Waters, the Mediterranean Sea, the Canary Current and the Guinea Current. We also incorporated bathymetry data to describe the distribution of species. Measurement across a relatively large spatial extent was made possible by incorporating the capabilities of GIS.While SST increased consistently over time in all of the ecosystems observed, the change in number of species differed among ecosystems. The number of species in the middle regions, such as the South European Atlantic Shelf and the Western Mediterranean Sea, tended to increase over time. These regions received numbers of species from the lower or the upper latitudes according to season. Of all of the species observed in the recent period, 7 species from the Canary Current tended to be found in the Western Mediterranean Sea, and 6 species from these two regions extended their distributions to the South European Atlantic Shelf. Twelve species from the Canary Current moved seasonally to the Guinea Current. In the northern regions, 13 species moved seasonally in the North Sea and the Celtic Seas, and 12 of these species reached the South European Atlantic Shelf.This study presents a picture of routes and timing of species migration at the

  5. Prescription of antimicrobial drugs in Norwegian aquaculture with an emphasis on "new" fish species.

    Science.gov (United States)

    Grave, Kari; Hansen, Magne Kjerulf; Kruse, Hilde; Bangen, Marit; Kristoffersen, Anja Bråthen

    2008-02-01

    The usage of antimicrobial (AM) drugs in farmed fish in Norwegian aquaculture for the period 2000-2005 was investigated by using prescription data. These data were validated against national sales data of AM drugs sold for use in farmed fish and were found to be highly valid. The defined course dose (DCD) was applied as the unit of measurement to correct for the variations in the dosages between different AM drugs. The DCD(kg) was the amount of an AM drug recommended for the treatment of a 1-kg fish. The calculated number of prescribed DCD(kg)s is an estimate of the biomass of farmed fish that can be treated with a certain amount AM drug. In the present study, the number of prescriptions issued (i.e., numbers of initiated treatments), weight of active substance prescribed and biomass treated were applied to describe the usage. An increase, although modest, in the AM drug usage in Norwegian aquaculture was observed from 2002 to 2005. This increase was accounted for by new-farmed fish species (other than Atlantic salmon and rainbow trout), especially Atlantic cod. The increased usage of AM drugs in cod in the study period was significantly positively correlated to the biomass produced; even so from 2001 to 2005 the number of prescriptions for cod relative to the produced biomass declined. The AM drug usage in Atlantic halibut as well as the production varied during the study period. For other species such as turbot, coalfish and wolffish the usage of AM drugs was found to be negligible. "Mono-therapy" with quinolones may present a selective pressure in regard to development of quinolone resistance.

  6. 77 FR 67574 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2012-11-13

    ...SnapperandReefFish.htm . FOR FURTHER INFORMATION CONTACT: Rich Malinowski, Southeast Regional Office, telephone 727-824-5305, email rich.malinowski@noaa.gov . SUPPLEMENTARY INFORMATION: The reef fish fishery of...

  7. Effects of decontaminated fish oil or a fish and vegetable oil blend on persistent organic pollutant and fatty acid compositions in diet and flesh of Atlantic salmon ( Salmo salar).

    Science.gov (United States)

    Sprague, Matthew; Bendiksen, Eldar A; Dick, James R; Strachan, Fiona; Pratoomyot, Jarunan; Berntssen, Marc H G; Tocher, Douglas R; Bell, John Gordon

    2010-05-01

    The health benefits of seafood are well documented and based on the unique supply of n-3 highly unsaturated fatty acids (HUFA). Aquaculture now contributes about 50 % of food-grade seafood globally and Atlantic salmon (Salmo salar) is a rich source of n-3 HUFA. However, salmon and other oily fish can accumulate lipophilic persistent organic pollutants (POP), including dioxins (PCDD/F), polychlorinated biphenyls (PCB) and polybrominated diphenyl ethers (PBDE), derived largely from feed. In the present study, triplicate groups of salmon, of initial weight 0.78 kg, were fed one of three experimental diets for 11 weeks. The diets were coated with either a northern fish oil (FO) with a high POP content (cNFO), the same oil that had been decontaminated (deNFO) or a blend of southern fish oil, rapeseed and soyabean oils (SFO/RO/SO). Dietary PCDD/F+dioxin-like PCB (DL-PCB) concentrations were 17.36, 0.45 and 0.53 ng toxic equivalents (TEQ)/kg, respectively. After 11 weeks, the flesh concentrations in fish fed the cNFO, deNFO and SFO/RO/SO diets were 6.42, 0.34 and 0.41 ng TEQ/kg, respectively. There were no differences in flesh EPA and DHA between fish fed the cNFO or deNFO diets although EPA and DHA were reduced by 50 and 30 %, respectively, in fish fed the SFO/RO/SO diet. Thus, decontaminated FO can be used to produce salmon high in n-3 HUFA and low in POP. Salmon produced using deNFO would be of high nutritional value and very low in POP and would utilise valuable fish oils that would otherwise be destroyed due to their high pollutant concentrations.

  8. 77 FR 31734 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2012-05-30

    ... through regulations at 50 CFR part 622 under the authority of the Magnuson-Stevens Fishery Conservation..., from 2011 to 2012. In 2011, all Gulf states, except Texas, implemented compatible fishing seasons for... component of the reef fish fishery tends to fish in deeper water and has a higher discard mortality rate...

  9. Loss of biodiversity in a conservation unit of the Brazilian Atlantic Forest: the effect of introducing non-native fish species.

    Science.gov (United States)

    Fragoso-Moura, E N; Oporto, L T; Maia-Barbosa, P M; Barbosa, F A R

    2016-02-01

    The introduction of species has become an important problem for biodiversity and natural ecosystem conservation. The lake system of the middle Rio Doce (MG, Brazil) comprises c. 200 lakes at various conservation states, of which 50 are located within the Rio Doce State Park (PERD). Previous studies had verified several of these lakes suffered non-native fishes introductions and the presence of these species needs for the implementation of actions aiming at not only their control but also the preservation of the native species. This study discusses the effects of non-native fish species in the largest conservation unit of Atlantic Forest in Minas Gerais, southeast of Brazil, using data from 1983 to 2010 distributed as follow: data prior to 2006 were obtained from previous studies, and data from September 2006 to July 2010 were obtained in Lake Carioca at four sampling stations using gillnets, seine nets and sieve. A total of 17 fish species was collected (2006-2010) of which five were introduced species. Among the small to medium size native species (30 to 2000 mm standard length) seven had disappeared, two are new records and one was recaptured. The non-native species Cichla kelberi (peacock bass) and Pygocentrus nattereri (red piranha) are within the most abundant captured species. Integrated with other actions, such as those preventing new introductions, a selective fishing schedule is proposed as an alternative approach to improve the conservation management actions and the local and regional biodiversity maintenance.

  10. Mercury Bioaccumulation Response to Recent Hg Pollution Abatement in an Oceanic Predatory Fish, Blue Marlin, Versus the Response in a Coastal Predatory Species, Bluefish, in the Western North Atlantic Ocean

    Science.gov (United States)

    Barber, R. T.; Cross, F. A.

    2015-12-01

    The consumption of marine fish, especially predatory species high in the food chain, is the major route through which people in developed countries are exposed to mercury. Recent work on a coastal species, bluefish (Pomatomus saltatrix), determined that the mercury concentration in fish from the U. S. Mid-Atlantic coast decreased 43% from 1972 to 2011. This mercury decline in a coastal marine fish parallels the mercury decline in many freshwater fish in the U.S. and Canada during the same time period. The result heightens interest in determining whether or not there has been any change in mercury concentration in oceanic predatory fish species, that is, fish that are permanent residents of the open ocean, during the past four decades. To answer this question we compared mercury analyses we made in the 1970s on tournament-caught blue marlin (Makaira nigricans) with those we made from 1998 to 2013. This comparison indicates that from the 1970s to 2013 mercury concentration in blue marlin caught in the western North Atlantic Ocean off the U.S. east coast has declined about 45%, a decline that is remarkably similar to the decline reported in coastal bluefish. These results suggest that a large area of the western North Atlantic Ocean is responding to reductions in emissions of mercury in the U.S. and Canada with reduced mercury bioaccumulation in predatory fish.

  11. Theoretical study of the effect of round straps on the selectivity in a diamond mesh cod-end

    DEFF Research Database (Denmark)

    Herrmann, Bent; Priour, D.; Krag, Ludvig Ahm

    2006-01-01

    FEMNET, a numerical tool based on the finite element method, was applied to estimate the shapes of various diamond-mesh cod-end designs during fishing. The only design differences rest in the use of round straps of different lengths, positions and numbers. The cod-end shape estimates were...... then entered in the selectivity simulation tool PRESEMO to simulate the selectivity processes of the various cod-end designs under the same varying fishing conditions. This enabled us to demonstrate how one or two round straps along the cod-end axis may change the selectivity of the cod-end compared...... with a reference cod-end, without round straps. We predict that in cod-end designs, which comply with the EU legislation, the 50% retention length (L50) may be reduced by up to 1.5 cm (5%) for haddock....

  12. Retention of fish larvae in a fjord system - a seasonal study of the larval life in a West Greenlandic fjord

    DEFF Research Database (Denmark)

    Swalethorp, Rasmus; Munk, Peter; Nielsen, Torkel Gissel

    in the early part of the spawning season, while later in the season we found larvae dispersing out through the fjord branch. Considering larval sizes and migratory ability these patterns could be due to seasonal changes in hydrography and tidal flow that may facilitate their dispersal...... (Hippoglossoides platessoides) are abundant. The innermost part of the fjord branch Kapisigdlit is the principal spawning site for the fjord population of Atlantic cod, and in 2010 a seasonal study was carried out on the early life of this population. Abundance and distribution of this and other occurring fish...... larval species was recorded from late March to early August along a 25 km transect covering the length of the fjord branch. Cod spawning started when the upper 20 m of the water column had reached a temperature of 2° C, and cod larvae abundances peaked on June 3rd (16 larvae per 100 m3) in the inner...

  13. Fluorescence of muscle and connective tissue from cod and salmon

    DEFF Research Database (Denmark)

    Andersen, Charlotte Møller; Wold, J.P.

    2003-01-01

    Autofluorescence of salmon and cod muscle was measured and compared with autofluorescence of collagen type I and type V. Similarities between fluorescence of fish muscle and collagen were found in that the same peaks were obtained around 390, 430, and 480 nm, These similarities are supported by p...

  14. Arctic Climate Change: A Tale of Two Cod Species

    Science.gov (United States)

    Arctic cod play an important role in the Arctic trophic hierarchy as the consumer of primary productivity and a food source for many marine fish and mammals. Shifts in their distribution and abundance could have cascading affects in the marine environment. This paper investigates...

  15. Atlantic Flyway Sea Duck Survey

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Atlantic Flyway Sea Duck Survey, conducted from 1991 to 2002 by the U.S. Fish and Wildlife Service, was established to record sea duck numbers using near shore...

  16. The influence of the ratio of protein energy to total energy in the feed on the activity of protein synthesis in vitro, the level of ribosomal RNA and the RNA-DNA ratio in white trunk muscle of Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Lied, E; Rosenlund, G

    1984-01-01

    Cod (Gadus morhua) were fed diets containing protein energy to total energy levels (PE/TE) of 10.0, 20.6, 29.6, 38.4, 56.2 and 74.1% for 21 days. Ribosomes were isolated from the white trunk muscle tissue, the capacity for protein synthesis in vitro determined and related to muscle tissue wet weight rRNA and DNA. Protein concentrations of less than 47.4% PE/TE in the diets reduce the ribosomal capacity for protein synthesis per g wet weight and per mg DNA, and the tissue contents of rRNA and ratio of rRNA/DNA. The capacity for muscle protein synthesis in vitro is a significant and sensitive parameter of protein inadequacy in fish diets.

  17. It is the economy, stupid! Projecting the fate of fish populations using ecological-economic modeling.

    Science.gov (United States)

    Quaas, Martin F; Reusch, Thorsten B H; Schmidt, Jörn O; Tahvonen, Olli; Voss, Rudi

    2016-01-01

    Four marine fish species are among the most important on the world market: cod, salmon, tuna, and sea bass. While the supply of North American and European markets for two of these species - Atlantic salmon and European sea bass - mainly comes from fish farming, Atlantic cod and tunas are mainly caught from wild stocks. We address the question what will be the status of these wild stocks in the midterm future, in the year 2048, to be specific. Whereas the effects of climate change and ecological driving forces on fish stocks have already gained much attention, our prime interest is in studying the effects of changing economic drivers, as well as the impact of variable management effectiveness. Using a process-based ecological-economic multispecies optimization model, we assess the future stock status under different scenarios of change. We simulate (i) technological progress in fishing, (ii) increasing demand for fish, and (iii) increasing supply of farmed fish, as well as the interplay of these driving forces under different scenarios of (limited) fishery management effectiveness. We find that economic change has a substantial effect on fish populations. Increasing aquaculture production can dampen the fishing pressure on wild stocks, but this effect is likely to be overwhelmed by increasing demand and technological progress, both increasing fishing pressure. The only solution to avoid collapse of the majority of stocks is institutional change to improve management effectiveness significantly above the current state. We conclude that full recognition of economic drivers of change will be needed to successfully develop an integrated ecosystem management and to sustain the wild fish stocks until 2048 and beyond. © 2015 John Wiley & Sons Ltd.

  18. Multiple-locus, variable number of tandem repeat analysis (MLVA of the fish-pathogen Francisella noatunensis

    Directory of Open Access Journals (Sweden)

    Ottem Karl F

    2011-01-01

    Full Text Available Abstract Background Since Francisella noatunensis was first isolated from cultured Atlantic cod in 2004, it has emerged as a global fish pathogen causing disease in both warm and cold water species. Outbreaks of francisellosis occur in several important cultured fish species making a correct management of this disease a matter of major importance. Currently there are no vaccines or treatments available. A strain typing system for use in studies of F. noatunensis epizootics would be an important tool for disease management. However, the high genetic similarity within the Francisella spp. makes strain typing difficult, but such typing of the related human pathogen Francisella tullarensis has been performed successfully by targeting loci with higher genetic variation than the traditional signature sequences. These loci are known as Variable Numbers of Tandem Repeat (VNTR. The aim of this study is to identify possible useful VNTRs in the genome of F. noatunensis. Results Seven polymorphic VNTR loci were identified in the preliminary genome sequence of F. noatunensis ssp. noatunensis GM2212 isolate. These VNTR-loci were sequenced in F. noatunensis isolates collected from Atlantic cod (Gadus morhua from Norway (n = 21, Three-line grunt (Parapristipoma trilineatum from Japan (n = 1, Tilapia (Oreochromis spp. from Indonesia (n = 3 and Atlantic salmon (Salmo salar from Chile (n = 1. The Norwegian isolates presented in this study show both nine allelic profiles and clades, and that the majority of the farmed isolates belong in two clades only, while the allelic profiles from wild cod are unique. Conclusions VNTRs can be used to separate isolates belonging to both subspecies of F. noatunensis. Low allelic diversity in F. noatunensis isolates from outbreaks in cod culture compared to isolates wild cod, indicate that transmission of these isolates may be a result of human activity. The sequence based MLVA system presented in this study should provide a good

  19. Intense habitat-specific fisheries-induced selection at the molecular Pan I locus predicts imminent collapse of a major cod fishery.

    Directory of Open Access Journals (Sweden)

    Einar Arnason

    Full Text Available Predation is a powerful agent in the ecology and evolution of predator and prey. Prey may select multiple habitats whereby different genotypes prefer different habitats. If the predator is also habitat-specific the prey may evolve different habitat occupancy. Drastic changes can occur in the relation of the predator to the evolved prey. Fisheries exert powerful predation and can be a potent evolutionary force. Fisheries-induced selection can lead to phenotypic changes that influence the collapse and recovery of the fishery. However, heritability of the phenotypic traits involved and selection intensities are low suggesting that fisheries-induced evolution occurs at moderate rates at decadal time scales. The Pantophysin I (Pan I locus in Atlantic cod (Gadus morhua, representing an ancient balanced polymorphism predating the split of cod and its sister species, is under an unusual mix of balancing and directional selection including current selective sweeps. Here we show that Pan I alleles are highly correlated with depth with a gradient of 0.44% allele frequency change per meter. AA fish are shallow-water and BB deep-water adapted in accordance with behavioral studies using data storage tags showing habitat selection by Pan I genotype. AB fish are somewhat intermediate although closer to AA. Furthermore, using a sampling design covering space and time we detect intense habitat-specific fisheries-induced selection against the shallow-water adapted fish with an average 8% allele frequency change per year within year class. Genotypic fitness estimates (0.08, 0.27, 1.00 of AA, AB, and BB respectively predict rapid disappearance of shallow-water adapted fish. Ecological and evolutionary time scales, therefore, are congruent. We hypothesize a potential collapse of the fishery. We find that probabilistic maturation reaction norms for Atlantic cod at Iceland show declining length and age at maturing comparable to changes that preceded the collapse of

  20. Warm, windy winters drive cod north and homing of spawners keeps them there

    DEFF Research Database (Denmark)

    Rindorf, Anna; Lewy, Peter

    2006-01-01

    and larval phases of cod led to a northward shift in the distribution of juvenile North Sea cod the following year. A concomitant northern shift of mature fish around the time of spawning was linked directly to a tendency for northerly distributed juveniles to remain northerly throughout their life...... of older age groups. Unless a series of cold and calm years combined with a reduced mortality in the southern areas allows a southern spawning population to rebuild, the cod stock is unlikely to return to its previous area of distribution. Furthermore, protecting adult cod mainly in northern areas...

  1. Salted and dried Cod preserved by vacuum and modified atmosphere

    Directory of Open Access Journals (Sweden)

    Maria José Rodrigues

    2014-06-01

    Full Text Available Temperatures higher than 20ºC can boost the growth, on the salted and dried cod surface, of bacteria that present a red pigment (Rodrigues et al., 2003; Rodrigues et al., 2005. These organisms, besides the change of the food product appearance, also cause an unpleasant flavor and the product is rejected by the consumers, although does not cause any health concern. Currently, the export of salted and dried cod, to Africa, has increased and a great amount of product is rejected due to the high environmental temperature and the lack of a proper cold chain storage infrastructure. Vacuum packaging, and modified atmosphere packaging have been used for fresh and cooked seafood preservation, but, as far as the authors know, were never used to preserve salted and dried fish. In the present study it was observed the effect of vacuum packaging, packaging with 80%N2:20%CO2 and finally the addition of sodium metabisulfite on the salted and dried cod stored under temperature abuse (15ºC, 25ºC and 35ºC. Accordingly, packaging under vacum and, specially, packaging with 80%N2:20%CO2 successfuly increased the shellife of salted and dried cod . The addition of sodium metabisulfite has increased the shelflife of salted and dried cod preserved at 15ºC, but not of salted and dried cod preserved at 25ºC and 35ºC.

  2. Parasites as biological tags of marine, freshwater and anadromous fishes in North America from the Tropics to the Arctic.

    Science.gov (United States)

    Marcogliese, David J; Jacobson, Kym C

    2015-01-01

    Parasites have been considered as natural biological tags of marine fish populations in North America for almost 75 years. In the Northwest Atlantic, the most studied species include Atlantic cod (Gadus morhua), Atlantic herring (Clupea harengus) and the redfishes (Sebastes spp.). In the North Pacific, research has centred primarily on salmonids (Oncorhynchus spp.). However, parasites have been applied as tags for numerous other pelagic and demersal species on both the Atlantic and Pacific coasts. Relatively few studies have been undertaken in the Arctic, and these were designed to discriminate anadromous and resident salmonids (Salvelinus spp.). Although rarely applied in fresh waters, parasites have been used to delineate certain fish stocks within the Great Lakes-St Lawrence River basin. Anisakid nematodes and the copepod Sphyrion lumpi frequently prove useful indicators in the Northwest Atlantic, while myxozoan parasites prove very effective on the coast and open seas of the Pacific Ocean. Relative differences in the ability of parasites to discriminate between fish stocks on the Pacific and Atlantic coasts may be due to oceanographic and bathymetric differences between regions. Molecular techniques used to differentiate populations and species of parasites show promise in future applications in the field.

  3. Offshore wind farms as productive sites or ecological traps for gadoid fishes?--impact on growth, condition index and diet composition.

    Science.gov (United States)

    Reubens, Jan T; Vandendriessche, Sofie; Zenner, Annemie N; Degraer, Steven; Vincx, Magda

    2013-09-01

    With the construction of wind farms all across the North Sea, numerous artificial reefs are created. These windmill artificial reefs (WARs) harbour high abundances of fish species which can be attracted from elsewhere or can be the result of extra production induced by these wind farms. To resolve the attraction-production debate in suddenly altered ecosystems (cf. wind farms), the possible consequences of attraction should be assessed; thereby bearing in mind that ecological traps may arise. In this paper we investigated whether the wind farms in the Belgian part of the North Sea act as ecological traps for pouting and Atlantic cod. Length-at-age, condition and diet composition of fish present at the windmill artificial reefs was compared to local and regional sandy areas. Fish data from the period 2009-2012 were evaluated. Mainly I- and II-group Atlantic cod were present around the WARs; while the 0- and I-group dominated for pouting. For Atlantic cod, no differences in length were observed between sites, indicating that fitness was comparable at the WARs and in sandy areas. No significant differences in condition index were observed for pouting. At the WARs, they were slightly larger and stomach fullness was enhanced compared to the surrounding sandy areas. Also diet differed considerably among the sites. The outcome of the proxies indicate that fitness of pouting was slightly enhanced compared to the surrounding sandy areas. No evidence was obtained supporting the hypothesis that the WARs act as an ecological trap for Atlantic cod and pouting.

  4. Fishing

    Institute of Scientific and Technical Information of China (English)

    姜群山

    2002-01-01

    @@ Last Saturday my cousin (表兄) came to my home. We were very happy to see each other. We decided that the next day we went to fish. We got up very early that day. When we left home,the moon could still be seen in the sky.

  5. Environmental preferences of tuna and non-tuna species associated with drifting fish aggregating devices (DFADs) in the Atlantic Ocean, ascertained through fishers' echo-sounder buoys

    Science.gov (United States)

    Lopez, Jon; Moreno, Gala; Lennert-Cody, Cleridy; Maunder, Mark; Sancristobal, Igor; Caballero, Ainhoa; Dagorn, Laurent

    2017-06-01

    Understanding the relationship between environmental variables and pelagic species concentrations and dynamics is helpful to improve fishery management, especially in a changing environment. Drifting fish aggregating device (DFAD)-associated tuna and non-tuna biomass data from the fishers' echo-sounder buoys operating in the Atlantic Ocean have been modelled as functions of oceanographic (Sea Surface Temperature, Chlorophyll-a, Salinity, Sea Level Anomaly, Thermocline depth and gradient, Geostrophic current, Total Current, Depth) and DFAD variables (DFAD speed, bearing and soak time) using Generalized Additive Mixed Models (GAMMs). Biological interaction (presence of non-tuna species at DFADs) was also included in the tuna model, and found to be significant at this time scale. All variables were included in the analyses but only some of them were highly significant, and variable significance differed among fish groups. In general, most of the fish biomass distribution was explained by the ocean productivity and DFAD-variables. Indeed, this study revealed different environmental preferences for tunas and non-tuna species and suggested the existence of active habitat selection. This improved assessment of environmental and DFAD effects on tuna and non-tuna catchability in the purse seine tuna fishery will contribute to transfer of better scientific advice to regional tuna commissions for the management and conservation of exploited resources.

  6. Positional Distribution of Fatty Acids in Triacylglycerols and Phospholipids from Fillets of Atlantic Salmon (Salmo Salar Fed Vegetable and Fish Oil Blends

    Directory of Open Access Journals (Sweden)

    Noemi Ruiz-Lopez

    2015-07-01

    Full Text Available The nutritional and functional characteristics of dietary fat are related to the fatty acid (FA composition and its positional distribution in the triacylglycerol (TAG fraction. Atlantic salmon is an important source of healthy long chain omega 3 FA (particularly, eicosapentaenoic (EPA and docoxahexaenoic (DHA acids. However, the impact of lipid sources in salmon feeds on the regiospecificity of FA in the fish TAG remains to be explored. The present study determines the effect of feeding salmon with blends of palm, rapeseed, and fish oil, providing two different EPA + DHA concentrations (high: H-ED 10.3% and low: L-ED 4.6% on the fillet lipid class composition and the positional distribution of FA in TAG and phospholipids. The regiospecific analysis of fillet TAG showed that around 50% of the EPA and around 80% of DHA was located in the sn-2 position. The positional distribution of FA in phosphatidylcholine (PC, showed that around 80% of the EPA and around 90% of DHA were located in the sn-2. Fish fed the vegetable-rich diets showed higher EPA in the sn-2 position in PC (77% vs. 83% in the H-ED and L-ED diets, respectively but similar DHA concentrations. It is concluded that feeding salmon with different EPA + DHA concentrations does not affect their positional distribution in the fillet TAG.

  7. Sensory characteristics of different cod products related to consumer preferences and attitudes

    DEFF Research Database (Denmark)

    Sveinsdottir, K.; Martinsdottir, E.; Green-Petersen, Ditte

    2009-01-01

    to fish consumption, attitudes and preferences of the eight cod products. However, it was demonstrated that within each country, different segments of consumers existed with different preferences, motives/barriers and demographic background. The results indicated various potential to increase fish...... the liking in terms of different consumer attitudes and demographics. The QDA discriminated well between the products. The farmed cod products Were considerably different from wild cod, with More light and even colour, meaty texture, odour and flavour. Country differences were considerable with regard...

  8. A wasted resource: cod discards in the North Sea

    DEFF Research Database (Denmark)

    Feekings, Jordan P.; Poos, Jan Jaap; Aarts, Geert

    2012-01-01

    The public, political, and stakeholder perception of fisheries discards is that they are a waste of a valuable resource. In the North Sea, fisheries discards are some of the highest in the world. Cod (Gadus morhua) has contributed considerably to the amount discarded. The declining cod stock with......, spatially and temporally, in discarding over the past decade while pinpointing the major reasons to why it occurs. We discuss how such information can be used to improve future fishing activities and their subsequent catch compositions under a discard...

  9. 77 FR 64237 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2012-10-19

    ... to current commercial fishing practices and to improve safety-at-sea in the Gulf reef fish fishery... improving safety-at-sea and allowing compliance with current Occupational Safety and Health Administration... the location of individual vessels in the fleet. Having a VMS on board makes it clear when a vessel is...

  10. 77 FR 38585 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2012-06-28

    ... for non-lethal sampling during the course of their normal fishing activities. This non-lethal sampling... releasing the live fish. The intent of this study is to provide regional age structure of recovering goliath... through the EFP to allow for- hire fishermen to temporarily possess goliath grouper for...

  11. Effects of chronic exposure to petroleum hydrocarbons on two species of marine fish infected with a hemoprotozoan, Trypanosoma murmanensis

    Energy Technology Data Exchange (ETDEWEB)

    Khan, R.A. (Memorial Univ. of Newfoundland St. John' s, NF (Canada))

    1987-01-01

    The present study was undertaken to ascertain the effects of a blood protozoan, Trypanosoma murmanensis, on two species of marine fish exposed to petroleum hydrocarbons. Infected juvenile and adult winter flounder were exposed for 6 weeks to sediment contaminated with a Venezuelan crude (total hydrocarbon concentration, 2600-3200 {mu}g/g) whereas Atlantic cod were exposed to water-accommodated fractions (50-100 {mu}g/l) for 12 weeks. Three other groups, uninfected controls, fish infected with trypanosomes only, and oil-treated, uninfected fish, were held in aquaria in a continuously flowing seawater system. Mortality was higher in the infected, oil-treated flounder and subadult cod than in the trypanosome-infected only, oil-treated, and control groups. Death in oil-treated flounder was associated with severe tail rot and hypersecretion of mucus from the gills, whereas blood values (hematocrit, hemoglobin, total plasma protein) were significantly depressed in both infected groups. Low body condition, excessive mucus secretion by the gills, and retarded gonadal development were observed in adult, oil-treated cod but these were more pronounced in the infected, oil-treated groups. Prevalence of the infection and parasitemias were higher in the oil-treated groups than in untreated fish. These results provide evidence that the combined effects of parasites and chronic oil pollution can not only cause mortality but can also jeopardize health and reproduction in surviving fish. 41 refs., 5 tabs.

  12. Structure of deep-sea pelagic fish assemblages in relation to the Mid-Atlantic Ridge (45° 50°N)

    Science.gov (United States)

    Fock, Heino O.; Pusch, Christian; Ehrich, Siegfried

    2004-07-01

    Pelagic fishes from depths of 250 to 3200 m from 45°N to 50°N were sampled during a mid-Atlantic cruise in 1982. These clustered into 6 assemblages, which were related to the Mid-Atlantic Ridge, the continental shelf edge and oceanic habitats. Spatial distribution of clusters coincided with SST and surface chlorophyll patterns. Cluster distribution further coincided with published mid-depth hydrography indicating that hydrographic recirculation features were an important determinant of community structure. Over the ridge, Melamphaidae, Serrivomeridae, Stomiidae and Centrolophidae increased in abundance. Horizontally, the myctophid Benthosema glaciale indicated the transition from temperate-subtropical to temperate-subarctic waters. The gadid Micromesistius poutassou and the alepocephalid Xenodermichthys copei were characteristic species for the shallow shelf edge assemblage. Vertically, extended depth ranges were stated for assemblages above MAR and the southern leg, as indicated for the species Gonostoma bathyphilum, and Schedophilus medusophagus. This was further tested for the saccopharyngid Saccopharynx ampullaceus. The increase of gelatinous plankton feeders over the ridge, in particular for S. medusophagus, is discussed with respect to a probable increase of gelatinous plankton abundance in the area considered. An error model was developed to address the contamination problem with respect to non-closing devices.

  13. Warm, windy winters drive cod north and homing of spawners keeps them there

    DEFF Research Database (Denmark)

    Rindorf, Anna; Lewy, Peter

    2006-01-01

    1. Climatic and anthropogenic effects often interact leading to unexpected results. For example, climate may lead to a change in the spatial distribution of a fish stock and thereby its vulnerability to exploitation. The North Sea cod stock is currently under pressure from both environmental change...... and human exploitation. This stock has experienced a series of poor recruitments since the late 1990s and, concomitant with the decrease in abundance, the distribution of cod has changed. While it has been suggested that the change in distribution can be linked to increasing temperatures and fishing......, stock size or limited directional movement of cod. Using the derived models, we investigated whether fishing has increased the sensitivity of the cod population to climate-induced distribution changes. 3. A series of winters characterized by high temperatures and southerly winds during the egg...

  14. Biomarkers in fish from dioxin-contaminated fjords.

    Science.gov (United States)

    Hylland, K; O Aspholm, O; Knutsen, J A; Ruus, A

    2006-01-01

    The Grenland fjords, southern Norway, have been heavily contaminated by dibenzo-p-dioxins and dibenzofurans (dioxins) over decades through inputs from a magnesium smelter. Despite radically decreased inputs since 1990, there are still high levels of dioxins in both biotic and abiotic components of the fjords. The aim of the study was to establish whether biomarkers' responses in three fish species, Atlantic cod (Gadus morhua L.), sea-trout (anadromous brown trout, Salmo trutta L.) and flounder (Platichthys flesus L.), could be used to discern the effects in the most contaminated ecosystem, Frierfjord, from the effects in the adjacent, less-contaminated ecosystem, Eidangerfjord. Biomarker responses clearly indicated that the three fish species were affected by dioxin exposure. Phase I responses in cod and trout could be used to differentiate exposure in the two fjord ecosystems. Phase II responses (glutathione S-transferase) in cod and trout similarly indicated a higher dioxin exposure in Frierfjord compared with Eidangerfjord. Results for glutathione S-transferase and glutathione reductase indicated different exposure levels in the two fjords, but also showed seasonal variability, and the results highlighted the need for baseline data for these biomarkers.

  15. Reproductive strategies and seasonal changes in the somatic indices of seven small-bodied fishes in Atlantic Canada in relation to study design for environmental effects monitoring.

    Science.gov (United States)

    Barrett, Timothy J; Brasfield, Sandra M; Carroll, Leslie C; Doyle, Meghan A; van den Heuvel, Michael R; Munkittrick, Kelly R

    2015-05-01

    Small-bodied fishes are more commonly being used in environmental effects monitoring (EEM) studies. There is a lack of understanding of the biological characteristics of many small-bodied species, which hinders study designs for monitoring studies. For example, 72% of fish population surveys in Canada's EEM program for pulp and paper mills that used small-bodied fishes were conducted outside of the reproductive period of the species. This resulted in an inadequate assessment of the EEM program's primary effect endpoint (reproduction) for these studies. The present study examined seasonal changes in liver size, gonad size, and condition in seven freshwater and estuarine small-bodied fishes in Atlantic Canada. These data were used to examine differences in reproductive strategies and patterns of energy storage among species. Female gonadal recrudescence in all seven species began primarily in the 2-month period in the spring before spawning. Male gonadal development was concurrent with females in five species; however, gonadal recrudescence began in the fall in male three-spined stickleback (Gasterosteus aculeatus) and slimy sculpin (Cottus cognatus). The spawning period for each species was estimated from the decline in relative ovary size after its seasonal maximum value in spring. The duration of the spawning period reflected the reproductive strategy (single vs multiple spawning) of the species. Optimal sampling periods to assess reproductive impacts in each species were determined based on seasonal changes in ovary size and were identified to be during the prespawning period when gonads are developing and variability in relative gonad size is at a minimum.

  16. 78 FR 37208 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of Puerto Rico...

    Science.gov (United States)

    2013-06-20

    ... Council (Council) and NMFS to use when making future management decisions for Caribbean reef fish. DATES... be provided to the Council and NMFS to use when making future management decisions for Caribbean...

  17. 76 FR 4084 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2011-01-24

    ... for submitting comments. Mail: Rich Malinowski, Southeast Regional Office, NMFS, 263 13th Avenue South... CONTACT: Rich Malinowski, 727-824-5305; fax: 727-824-5308. SUPPLEMENTARY INFORMATION: The reef fish...

  18. 76 FR 23904 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2011-04-29

    ... accurately characterize the part of a fish's anatomy where the venting device should be utilized. Comments... comments that expressed general support of the action contained in this final rule. The remainder of the...

  19. Comparative ecology of widely distributed pelagic fish species in the North Atlantic: Implications for modelling climate and fisheries impacts

    DEFF Research Database (Denmark)

    Trenkel, V.M.; Huse, G.; MacKenzie, Brian

    2014-01-01

    scombrus), capelin (Mallotus villosus), blue whiting (Micromesistius poutassou), and horse mackerel (Trachurus trachurus), which have distributions extending beyond the continental shelf and predominantly occur on both sides of the North Atlantic. We also include albacore (Thunnus alalunga), bluefin tuna...... (Thunnus thynnus), swordfish (Xiphias gladius), and blue marlin (Makaira nigricans), which, by contrast, show large-scale migrations at the basin scale. We focus on the links between life history processes and the environment, horizontal and vertical distribution, spatial structure and trophic role. Many...

  20. Species Profiles. Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates, North Atlantic, Mid-Atlantic, South Atlantic, South Florida, Gulf of Mexico, Pacific Southwest and Pacific Northwest.

    Science.gov (United States)

    1986-01-01

    building corals. crystalline style - Gelatinous rod used for digestion in oysters and other bivalves and certain snails. ctenoid scale - Teleost (bony...important components of the plankton . diel - Pertains to a 24-hour period. dimorphism - Marked differences between the sexes of an organism in size, color, or...rakers - Bony protuberances on anterior edge of the gill arches; normally short in predator fishes, but long and slender in fishes that eat plankton

  1. Effects of genotype and dietary fish oil replacement with vegetable oil on the intestinal transcriptome and proteome of Atlantic salmon (Salmo salar

    Directory of Open Access Journals (Sweden)

    Morais Sofia

    2012-09-01

    Full Text Available Abstract Background Expansion of aquaculture requires alternative feeds and breeding strategies to reduce dependency on fish oil (FO and better utilization of dietary vegetable oil (VO. Despite the central role of intestine in maintaining body homeostasis and health, its molecular response to replacement of dietary FO by VO has been little investigated. This study employed transcriptomic and proteomic analyses to study effects of dietary VO in two family groups of Atlantic salmon selected for flesh lipid content, 'Lean' or 'Fat'. Results Metabolism, particularly of lipid and energy, was the functional category most affected by diet. Important effects were also measured in ribosomal proteins and signalling. The long-chain polyunsaturated fatty acid (LC-PUFA biosynthesis pathway, assessed by fatty acid composition and gene expression, was influenced by genotype. Intestinal tissue contents of docosahexaenoic acid were equivalent in Lean salmon fed either a FO or VO diet and expression of LC-PUFA biosynthesis genes was up-regulated in VO-fed fish in Fat salmon. Dietary VO increased lipogenesis in Lean fish, assessed by expression of FAS, while no effect was observed on β-oxidation although transcripts of the mitochondrial respiratory chain were down-regulated, suggesting less active energetic metabolism in fish fed VO. In contrast, dietary VO up-regulated genes and proteins involved in detoxification, antioxidant defence and apoptosis, which could be associated with higher levels of polycyclic aromatic hydrocarbons in this diet. Regarding genotype, the following pathways were identified as being differentially affected: proteasomal proteolysis, response to oxidative and cellular stress (xenobiotic and oxidant metabolism and heat shock proteins, apoptosis and structural proteins particularly associated with tissue contractile properties. Genotype effects were accentuated by dietary VO. Conclusions Intestinal metabolism was affected by diet and

  2. Atlantic menhaden processing plant test tagging data

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Atlantic menhaden are a schooling forage fish species, which are subject to a large commercial purse seine fishery. Atlantic menhaden are harvested for reduction...

  3. Ectoparasitism on deep-sea fishes in the western North Atlantic: In situ observations from ROV surveys.

    Science.gov (United States)

    Quattrini, Andrea M; Demopoulos, Amanda W J

    2016-12-01

    A complete understanding of how parasites influence marine ecosystem functioning requires characterizing a broad range of parasite-host interactions while determining the effects of parasitism in a variety of habitats. In deep-sea fishes, the prevalence of parasitism remains poorly understood. Knowledge of ectoparasitism, in particular, is limited because collection methods often cause dislodgment of ectoparasites from their hosts. High-definition video collected during 43 remotely operated vehicle surveys (2013-2014) provided the opportunity to examine ectoparasitism on fishes across habitats (open slope, canyon, seamount, cold seep) and depths (494-4689 m) off the northeastern U.S., while providing high-resolution images and valuable observations of fish behavior. Only 9% (n = 125 individuals) of all observed fishes (25 species) were confirmed with ectoparasites, but higher percentages (∼33%) were observed for some of the most abundant fish species (e.g., Antimora rostrata). Ectoparasites included two copepod families (Lernaeopodidae, Sphyriidae) that infected four host species, two isopod families (Cymothoidae, Aegidae) that infected three host species, and one isopod family (Gnathiidae) that infected 19 host species. Hyperparasitism was also observed. As host diversity declined with depth, ectoparasite diversity declined; only gnathiids were observed at depths down to 3260 m. Thus, gnathiids appear to be the most successful group to infect a diversity of fishes across a broad depth range in the deep sea. For three dominant fishes (A. rostrata, Nezumia bairdii, Synaphobranchus spp.), the abundance and intensity of ectoparasitism peaked in different depths and habitats depending on the host species examined. Notably, gnathiid infections were most intense on A. rostrata, particularly in submarine canyons, suggesting that these habitats may increase ectoparasite infections. Although ectoparasitism is often overlooked in deep-sea benthic communities, our

  4. Ectoparasitism on deep-sea fishes in the western North Atlantic: In situ observations from ROV surveys

    Science.gov (United States)

    Quattrini, Andrea; Demopoulos, Amanda

    2016-01-01

    A complete understanding of how parasites influence marine ecosystem functioning requires characterizing a broad range of parasite-host interactions while determining the effects of parasitism in a variety of habitats. In deep-sea fishes, the prevalence of parasitism remains poorly understood. Knowledge of ectoparasitism, in particular, is limited because collection methods often cause dislodgment of ectoparasites from their hosts. High-definition video collected during 43 remotely operated vehicle surveys (2013–2014) provided the opportunity to examine ectoparasitism on fishes across habitats (open slope, canyon, seamount, cold seep) and depths (494–4689 m) off the northeastern U.S., while providing high-resolution images and valuable observations of fish behavior. Only 9% (n = 125 individuals) of all observed fishes (25 species) were confirmed with ectoparasites, but higher percentages (∼33%) were observed for some of the most abundant fish species (e.g., Antimora rostrata). Ectoparasites included two copepod families (Lernaeopodidae, Sphyriidae) that infected four host species, two isopod families (Cymothoidae, Aegidae) that infected three host species, and one isopod family (Gnathiidae) that infected 19 host species. Hyperparasitism was also observed. As host diversity declined with depth, ectoparasite diversity declined; only gnathiids were observed at depths down to 3260 m. Thus, gnathiids appear to be the most successful group to infect a diversity of fishes across a broad depth range in the deep sea. For three dominant fishes (A. rostrata, Nezumia bairdii, Synaphobranchus spp.), the abundance and intensity of ectoparasitism peaked in different depths and habitats depending on the host species examined. Notably, gnathiid infections were most intense on A. rostrata, particularly in submarine canyons, suggesting that these habitats may increase ectoparasite infections. Although ectoparasitism is often overlooked in deep-sea benthic communities

  5. Ectoparasitism on deep-sea fishes in the western North Atlantic: In situ observations from ROV surveys

    Directory of Open Access Journals (Sweden)

    Andrea M. Quattrini

    2016-12-01

    Full Text Available A complete understanding of how parasites influence marine ecosystem functioning requires characterizing a broad range of parasite-host interactions while determining the effects of parasitism in a variety of habitats. In deep-sea fishes, the prevalence of parasitism remains poorly understood. Knowledge of ectoparasitism, in particular, is limited because collection methods often cause dislodgment of ectoparasites from their hosts. High-definition video collected during 43 remotely operated vehicle surveys (2013–2014 provided the opportunity to examine ectoparasitism on fishes across habitats (open slope, canyon, seamount, cold seep and depths (494–4689 m off the northeastern U.S., while providing high-resolution images and valuable observations of fish behavior. Only 9% (n = 125 individuals of all observed fishes (25 species were confirmed with ectoparasites, but higher percentages (∼33% were observed for some of the most abundant fish species (e.g., Antimora rostrata. Ectoparasites included two copepod families (Lernaeopodidae, Sphyriidae that infected four host species, two isopod families (Cymothoidae, Aegidae that infected three host species, and one isopod family (Gnathiidae that infected 19 host species. Hyperparasitism was also observed. As host diversity declined with depth, ectoparasite diversity declined; only gnathiids were observed at depths down to 3260 m. Thus, gnathiids appear to be the most successful group to infect a diversity of fishes across a broad depth range in the deep sea. For three dominant fishes (A. rostrata, Nezumia bairdii, Synaphobranchus spp., the abundance and intensity of ectoparasitism peaked in different depths and habitats depending on the host species examined. Notably, gnathiid infections were most intense on A. rostrata, particularly in submarine canyons, suggesting that these habitats may increase ectoparasite infections. Although ectoparasitism is often overlooked in deep-sea benthic

  6. Effects of mining chemicals on fish: exposure to tailings containing Lilaflot D817M induces CYP1A transcription in Atlantic salmon smolt.

    Science.gov (United States)

    Olsvik, Pål A; Urke, Henning A; Nilsen, Tom O; Ulvund, John B; Kristensen, Torstein

    2015-08-29

    Mine tailings, containing metals and production chemicals such as flotation chemicals and flocculants, may pose an environmental threat to aquatic organisms living in downstream ecosystems. The aim of this work was to study to which degree Lilaflot D817M, a flotation chemical extensively used by the mining industry, represents a hazard for migrating salmon in rivers affected by mining activity. Smoltifying Atlantic salmon were exposed to four concentrations of iron-ore mine tailings containing residual Lilaflot D817M [water versus tailing volumes of 0.002 (Low), 0.004 (Medium), 0.013 (High) and 0.04 (Max)]. After 96 h of exposure, gill and liver tissues were harvested for transcriptional responses. Target genes included markers for oxidative stress, detoxification, apoptosis and DNA repair, cell signaling and growth. Of the 16 evaluated markers, significant transcriptional responses of exposure to tailings enriched with Lilaflot D817M were observed for CYP1A, HSP70 and HMOX1 in liver tissue and CYP1A in gill tissue. The significant induction of CYP1A in both liver and gills suggest that the flotation chemical is taken up by the fish and activates cytochrome P450 detoxification via phase I biotransformation in the cells. The overall weak transcriptional responses to short-term exposure to Lilaflot D817M-containing iron-ore tailings suggest that the mining chemical has relatively low toxic effect on fish. The underlying mechanisms behind the observed CYP1A induction should be studied further.

  7. Spinitectus osorioi (Nematoda: Cystidicolidae in the Mexican endemic fish Atherinella alvarezi (Atherinopsidae from the Atlantic River drainage system in Chiapas, Southern Mexico

    Directory of Open Access Journals (Sweden)

    František Moravec

    2010-02-01

    Full Text Available Specimens of Spinitectus osorioi Choudhury and Pérez-Ponce de León, an intestinal nematode species previously considered to be specific to Chirostoma spp and endemic to some lakes in the Pacific drainage in Michoacán, were collected from the freshwater fish Atherinella alvarezi (Díaz-Pardo (Atherinopsidae of the Michol River near Palenque, Chiapas, Southern Mexico, which belongs to the Atlantic drainage system. Studies using light and scanning electron microscopy revealed some taxonomically important, previously unreported or erroneously reported features of S. osorioi, such as the location of the vulva, the actual number and distribution of postanal papillae and phasmids and the presence of a short median cuticular ridge anterior to the cloacal opening (in addition to two long subventral ridges. The recorded somewhat shorter spicules (420-465 and 105-111 μm and mostly smaller eggs (33-36 × 18-20 μm as compared to the original species description may be due to a different type of host, geographical region or generally smaller body measurements of these specimens. These biometrical differences are considered to be within the limits of the intraspecific variability of S. osorioi. A key to species of Spinitectus parasitizing freshwater fishes in Mexico is provided.

  8. Spinitectus osorioi (Nematoda: Cystidicolidae) in the Mexican endemic fish Atherinella alvarezi (Atherinopsidae) from the Atlantic River drainage system in Chiapas, Southern Mexico.

    Science.gov (United States)

    Moravec, Frantisek; Salgado-Maldonado, Guillermo; Caspeta-Mandujano, Juan M

    2010-02-01

    Specimens of Spinitectus osorioi Choudhury and Pérez-Ponce de León, an intestinal nematode species previously considered to be specific to Chirostoma spp and endemic to some lakes in the Pacific drainage in Michoacán, were collected from the freshwater fish Atherinella alvarezi (Díaz-Pardo) (Atherinopsidae) of the Michol River near Palenque, Chiapas, Southern Mexico, which belongs to the Atlantic drainage system. Studies using light and scanning electron microscopy revealed some taxonomically important, previously unreported or erroneously reported features of S. osorioi, such as the location of the vulva, the actual number and distribution of postanal papillae and phasmids and the presence of a short median cuticular ridge anterior to the cloacal opening (in addition to two long subventral ridges). The recorded somewhat shorter spicules (420-465 and 105-111 microm) and mostly smaller eggs (33-36 x 18-20 microm) as compared to the original species description may be due to a different type of host, geographical region or generally smaller body measurements of these specimens. These biometrical differences are considered to be within the limits of the intraspecific variability of S. osorioi. A key to species of Spinitectus parasitizing freshwater fishes in Mexico is provided.

  9. On the prediction of short term changes in the recruitment of North Sea cod (Gadus morhua using statistical temperature forecasts

    Directory of Open Access Journals (Sweden)

    Benjamin Planque

    2003-04-01

    Full Text Available Empirical evidence supports the hypothesis of a general relationship between sea temperature and recruitment of cod stocks across the North Atlantic, as well as between recruitment and the size of the spawning population. In the North Sea, cod year-class strength is inversely related to sea surface temperature during the first half of the year. This stock is currently at a low level, and the future trajectory of the stock biomass will be strongly influenced by recruitment levels. In the present study we investigate the possible use of observed and modelled sea surface temperature (SST to increase the accuracy and/or time horizon of recruitment forecasts for this stock. We show that the statistical model developed for forecasting spring temperature has good skill (35% skill, with a standard error of 0.36°C when predictions are made in late January. Within the frame of the current fish stock assessment working group we incorporate SST observations and January forecasts and simulate short-term recruitment projections. The resulting model accounts for a greater fraction of the variance in recruitment (42% than that obtained without temperature (17%. In operational mode, the model allows forecasting 1.5 years in advance but the accuracy of predicted recruitment remains low. This example indicates that we have not yet reached a point where environmental information can be used with great benefit for the management of North Sea cod. However, a similar strategy may yield greater benefits if developed for other stocks for which environmental effects are better understood and/or account for a larger fraction of the variability in recruitment, for species with a shorter generation time and species for which recruitment forecast is critical to management (e.g. anchovy, and in areas where environmental prediction capabilities may be greater either in accuracy or in lead time.

  10. Moritella viscosa, a pathogenic bacterium affecting the fillet quality in fish

    DEFF Research Database (Denmark)

    Ingerslev, Hans-Christian; Nielsen, Michael Engelbrecht

    2011-01-01

    Moritella viscosa is a bacterium belonging to the family Moritellaceae and was formerly known as Vibrio viscosus. The name ‘viscosa’ originates from the slimy nature of the bacterium. M. viscosa is considered to be the main causative agent of the phenomenon ‘winter ulcer’ or ‘cold-water ulcer’ wh...... market price because of a quality downgrade caused by textural changes in the fillet....... cod (Gadus morhua), Atlantic halibut (Hippoglossus hippoglossus) and turbot (Scophthalmus maximus). In Norway, the disease is considered a major problem and is currently the main bacterial infection in Norwegian aquaculture (Bornø et al. 2010). Fish previously infected with M. viscosa obtain a lower...

  11. 77 FR 65640 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the...

    Science.gov (United States)

    2012-10-30

    ... Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the Central Regulatory Area of the Gulf... directed fishing for Pacific cod by vessels using pot gear in the Central Regulatory Area of the Gulf of...) apportioned to vessels using pot gear in the Central Regulatory Area of the GOA. DATES: Effective 1200...

  12. 76 FR 66655 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod and Octopus in the Bering Sea...

    Science.gov (United States)

    2011-10-27

    ... Economic Zone Off Alaska; Pacific Cod and Octopus in the Bering Sea and Aleutian Islands Management Area... necessary to limit incidental catch of octopus by vessels using pot gear to fish for Pacific cod the BSAI... Act requires that conservation and management measures prevent overfishing. The 2011...

  13. 77 FR 67580 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Jig Gear in the...

    Science.gov (United States)

    2012-11-13

    ... Economic Zone Off Alaska; Pacific Cod by Vessels Using Jig Gear in the Central Regulatory Area of the Gulf... directed fishing for Pacific cod by vessels using jig gear in the Central Regulatory Area of the Gulf of...) apportioned to vessels using jig gear in the Central Regulatory Area of the GOA. DATES: Effective 1200...

  14. Isolation of putative probionts from cod rearing environment

    DEFF Research Database (Denmark)

    Lauzon, H.L.; Gudmundsdottir, S.; Pedersen, M.H.;

    2008-01-01

    , metabolite production and adhesion to fish cell lines. Our study demonstrated that 14% of screened bacteria (n = 188) had antagonistic properties towards fish pathogens. The majority of these isolates were Gram-positive (81%), belonging to Firmicutes (69.2%) and Actinobacteria (11.5%) phyla based on 16S r...... was designed to search for new probiotics to target this critical period in cod rearing. Potential probionts were selected from the naturalmicrobiota of cod aquacultural environment. The selection was based on several criteria: pathogen inhibition potential, growth characteristics, strain identification......RNA gene sequencing. Only 6 (3.2%) of 188 isolates could inhibit all three pathogens tested: Vibrio anguillarum, Aeromonas salmonicida subsp. achromogenes and Vibrio salmonicida. Differences observed in activity intensity and spectrum among inhibitory isolates emphasise the need to develop probiotic...

  15. 78 FR 26607 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2013-05-07

    ... yield (OY) and prevent overfishing of vermilion and yellowtail snappers, reduce the regulatory burden to... councils to prevent overfishing and achieve, on a continuing basis, OY from ] federally managed fish stocks... indicated that the yellowtail snapper stock was not overfished or undergoing overfishing. As a result...

  16. 78 FR 12012 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2013-02-21

    ... to prevent overfishing of gag, and to reduce fishing pressure on other SWG species. The reduction in... to help achieve OY for the Gulf gag and other SWG resources and prevent overfishing from the stocks... requires NMFS and regional fishery management councils to prevent overfishing and achieve, on a...

  17. 76 FR 50979 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2011-08-17

    ... Resources of the Gulf of Mexico (FMP), as prepared and submitted by the Gulf of Mexico Fishery Management..., speculation, or environmental protection. As a result, prospective entities may be businesses, nonprofit..., all entities that possess a valid or renewable commercial reef fish permit are assumed to comprise the...

  18. 75 FR 2469 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2010-01-15

    ... Amendment 31 to the Fishery Management Plan for the Reef Fish Resources of the Gulf of Mexico (FMP) prepared... protection for threatened loggerhead sea turtles in compliance with ESA. To address this issue in the short... would need to possess an active or renewable (within the one year grace period immediately following...

  19. 76 FR 464 - Notification of U.S. Fish Quotas and an Effort Allocation in the Northwest Atlantic Fisheries...

    Science.gov (United States)

    2011-01-05

    ... (see ADDRESSES). Transfer and Chartering of U.S. Quota Allocations In the event that no adequate... chartering arrangements to fish the 2011 U.S. quota allocation for 3L shrimp. Under NAFO rules in effect... chartering operation through a mail notification process. A NAFO Contracting Party wishing to enter into a...

  20. Contents of cadmium, mercury and lead in fish from the Atlantic sea (Morocco) determined by atomic absorption spectrometry.

    Science.gov (United States)

    Chahid, Adil; Hilali, Mustapha; Benlhachimi, Abdeljalil; Bouzid, Taoufiq

    2014-03-15

    As a part of a specific monitoring program, lead (Pb) cadmium (Cd) and mercury (Hg) concentrations in important species of fish from various fishing ports of the southern Kingdom of Morocco (Sardina pilchardus, Scomber scombrus, Plectorhinchus mediterraneus, Trachurus trachurus, Octopus vulgaris, Boops boops, Sarda sarda, Trisopterus capelanus, and Conger conger) were investigated by the Moroccan Reference Laboratory (NRL) for trace elements in foodstuffs of animal origin. The samples were analysed for lead and cadmium by a graphite furnace atomic absorption spectrometry (GFAAS); and for mercury by cold vapour atomic absorption spectrometry (CVAAS). The results were expressed as μg/g of wet weight (w/w). The levels of Cd, Pb and Hg in muscles of fish were 0.009-0.036, 0.013-0.114 and 0.049-0.194 μg/g, respectively. The present study showed that different metals were present in the sample at different levels but within the maximum residual levels prescribed by the EU for the fish and shellfish from these areas, in general, should cause no health problems for consumers.

  1. 78 FR 5404 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2013-01-25

    ... fields, and enter or attach your comments. Mail: Submit written comments to Rich Malinowski, Southeast... FURTHER INFORMATION CONTACT: Rich Malinowski, Southeast Regional Office, NMFS, telephone 727-824-5305; email: rich.malinowski@noaa.gov . SUPPLEMENTARY INFORMATION: The reef fish fishery of the Gulf of Mexico...

  2. 75 FR 35335 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery...

    Science.gov (United States)

    2010-06-22

    ... from Rich Malinowski, NMFS, Southeast Regional Office, 263 13th Avenue South, St. Petersburg, FL 33701; telephone: 727-824-5305. FOR FURTHER INFORMATION CONTACT: Rich Malinowski, telephone: 727-824- 5305, e-mail Rich.Malinowski@noaa.gov . SUPPLEMENTARY INFORMATION: The reef fish fishery of the Gulf is managed...

  3. 78 FR 14225 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery...

    Science.gov (United States)

    2013-03-05

    ... Malinowski, NMFS, Southeast Regional Office, 263 13th Avenue South, St. Petersburg, FL 33701; telephone: 727-824-5305. FOR FURTHER INFORMATION CONTACT: Rich Malinowski, telephone: 727-824- 5305, or email: Rich.Malinowski@noaa.gov . SUPPLEMENTARY INFORMATION: The reef fish fishery of the Gulf is managed under the...

  4. 77 FR 39460 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2012-07-03

    ... ``Instructions'' for submitting comments. Mail: Rich Malinowski, Southeast Regional Office, NMFS, 263 13th Avenue....gov . FOR FURTHER INFORMATION CONTACT: Rich Malinowski, Southeast Regional Office, NMFS, telephone 727-824-5305; email: rich.malinowski@noaa.gov . SUPPLEMENTARY INFORMATION: The Reef fish fishery of the...

  5. 78 FR 45894 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of Puerto Rico...

    Science.gov (United States)

    2013-07-30

    ...). If the average ex-vessel price were $5 per pound, the total annual revenue loss would be between $4... to mitigate for potential losses of parrotfish landings by increasing fishing time and any bait and... public comment (78 FR 15338). The proposed rule and Regulatory Amendment 4 outline the rationale for...

  6. 77 FR 42251 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2012-07-18

    ... crew best suited to the needs or conditions of the trip. As a result, although the effects are again...-Rulemaking Portal: http://www.regulations.gov , enter ``NOAA-NMFS-2011-0025'' in the search field and click... charter trip, but subsequently selling the catch. Under current commercial fishing practices, limiting...

  7. 77 FR 30507 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Reef Fish Fishery of the Gulf of...

    Science.gov (United States)

    2012-05-23

    ... Marine Fisheries Service (NMFS), National Oceanic and Atmospheric Administration (NOAA), Commerce. ACTION.... Fish collected under this EFP would be surrendered to LDWF personnel or other state fishery biologists... granted, include but are not limited to, a prohibition of conducting research within marine protected...

  8. Refugia of marine fish in the Northeast Atlantic during the Last Glacial Maximum: concordant assessment from archaeozoology and palaeotemperature reconstructions

    Directory of Open Access Journals (Sweden)

    A. J. Kettle

    2010-07-01

    Full Text Available Archaeozoological finds of the remains of marine and amphihaline fish from the Last Glacial Maximum (LGM ca. 21 ka ago show evidence of very different species ranges compared to the present. We show how an ecological niche model (ENM based on palaeoclimatic reconstructions of sea surface temperature and bathymetry can be used to effectively predict the spatial range of marine fish during the LGM. The results indicate that the ranges of marine fish species that are now in Northwestern Europe were almost completely displaced southward from the modern distribution. Significantly, there is strong evidence that there was an invasion of fish of current economic importance into the Western Mediterranean through the Straits of Gibraltar, where they were exploited by Palaeolithic human populations. There has been much recent interest in the marine glacial refugia to understand how the ranges of the economically important fish species will be displaced with the future climate warming. Recent ENM studies have suggested that species ranges may not have been displaced far southward during the coldest conditions of the LGM. However, archaeozoological evidence and LGM ocean temperature reconstructions indicate that there were large range changes, and certain marine species were able invade the Western Mediterranean. These findings are important for ongoing studies of molecular ecology that aim to assess marine glacial refugia from the genetic structure of living populations, and they pose questions about the genetic identity of vanished marine populations during the LGM. The research presents a challenge for future archaeozoological work to verify palaeoclimatic reconstructions and delimit the glacial refugia.

  9. Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Mid-Atlantic). Bay Scallop

    Energy Technology Data Exchange (ETDEWEB)

    Fay, C.W.; Neves, R.J.; Pardue, G.B.

    1983-10-01

    Species profiles are literature summaries of the taxonomy, morphology, range, life history, and environmental requirements of coastal aquatic species. The bay scallop (Argopecten irradians) is a commercially and ecologically important scallop of estuarine and inshore environments, from Cape Cod, Massachusetts, to Laguna Madre, Texas. They occur at depths from 0.3 to 18 m but are most common in waters less than 2 m deep. They spawn at 1 year of age from April through December, later in southern populations. Water temperature and food supply are important factors for proper gonad developent and spawning. Larvae are planktonic, and juveniles settle and attach by byssal threads to suitable substrates; seagrass beds are preferred for settlement. Bay scallops are filter feeders, consuming primarily benthic diatoms. Temperature, salinity, water currents, and availability of suitable attachment/settlement substrates are the most important environmental requirements of bay scallops. They require a minimum water temperature of 20/sup 0/C for spawning, and a minimum of 14 ppt salinity, grow best in currents less than 1 cm/s, and prefer eelgrass to other seagrasses for settlement and attachment during early life stages. 52 references, 2 figures.

  10. Early life of inshore fishes in Greenland

    DEFF Research Database (Denmark)

    Swalethorp, Rasmus

    regimes, relative inflowof Atlantic water, temperature increase, glacial melting and runoff from land, the environment off West Greenland will undergo significant changes in the future. This thesis points out that in fjord systems, where such processes might change the timing and magnitude of freshwater....... The distribution of larvae generally overlapped the distribution of their preferred prey. Although no direct relationship could be found between prey availability and cod larval growth, the otolith growth rate was significantly improved in larvae that dispersing away from the spawning area. This was despite lower...... Greenlandic Godthåbsfjord system and the offshore Fyllas Bank, which encompass different oceanographic regimes, and which harbor different zooplanktoncommunities in specific regions. Significantly different patterns of distribution were shown for the fish larvae and these appeared linked to the specific...

  11. Large-Scale Examination of Spatio-Temporal Patterns of Drifting Fish Aggregating Devices (dFADs from Tropical Tuna Fisheries of the Indian and Atlantic Oceans.

    Directory of Open Access Journals (Sweden)

    Alexandra Maufroy

    Full Text Available Since the 1990s, massive use of drifting Fish Aggregating Devices (dFADs to aggregate tropical tunas has strongly modified global purse-seine fisheries. For the first time, a large data set of GPS positions from buoys deployed by French purse-seiners to monitor dFADs is analysed to provide information on spatio-temporal patterns of dFAD use in the Atlantic and Indian Oceans during 2007-2011. First, we select among four classification methods the model that best separates "at sea" from "on board" buoy positions. A random forest model had the best performance, both in terms of the rate of false "at sea" predictions and the amount of over-segmentation of "at sea" trajectories (i.e., artificial division of trajectories into multiple, shorter pieces due to misclassification. Performance is improved via post-processing removing unrealistically short "at sea" trajectories. Results derived from the selected model enable us to identify the main areas and seasons of dFAD deployment and the spatial extent of their drift. We find that dFADs drift at sea on average for 39.5 days, with time at sea being shorter and distance travelled longer in the Indian than in the Atlantic Ocean. 9.9% of all trajectories end with a beaching event, suggesting that 1,500-2,000 may be lost onshore each year, potentially impacting sensitive habitat areas, such as the coral reefs of the Maldives, the Chagos Archipelago, and the Seychelles.

  12. Effect of produced water on cod (Gadus morhua) immune responses

    Energy Technology Data Exchange (ETDEWEB)

    Hamoutene, D.; Mabrouk, G.; Samuelson, S.; Mansour, A.; Lee, K. [Fisheries and Oceans Canada, Dartmouth, NS (Canada). Maritimes Region, Ocean Sciences Division; Volkoff, H.; Parrish, C. [Memorial Univ. of Newfoundland, St. John' s, NL (Canada); Mathieu, A. [Oceans Ltd., St. John' s, NL (Canada)

    2007-07-01

    Studies have shown that produced water (PW) discharged from North Sea offshore platforms affects the biota at greater distances from operational platforms than originally presumed. According to PW dispersion simulations, dilution by at least 240 times occurs within 50-100 m, and up to 9000 times by 20 km from the discharge. In this study, the effect of PW on cod immunity was investigated by exposing fish to 0, 100 ppm (x 10,000 dilution) or 200 ppm (x 500) of PW for 76 days. Immune responses were evaluated at the end of the exposure. Fish from the 3 groups were injected with Aeromonas salmonicida lipopolysaccharides (LPS). Blood cell observation and flow cytometry were used to investigate the serum cortisol levels and gill histology along with ratios and respiratory burst (RB) responses of both circulating and head-kidney white blood cells (WBCs). The study revealed that baseline immunity and stress response were not affected by PW, other than an irritant-induced change in gill cells found in treated cod. In all groups, LPS injection resulted in a pronounced decrease in RB of head-kidney cells and an increase in serum cortisol and protein levels. However, the group exposed to 200 ppm of PW exhibited the most significant changes. LPS injection was also shown to influence WBC ratios, but further studies are needed to determine if this impact is stronger in fish exposed to PW. This study suggested an effect of PW on cod immunity after immune challenge with LPS.

  13. Dynamics of fish assemblages on a continuous rocky reef and adjacent unconsolidated habitats at Fernando de Noronha Archipelago, tropical western Atlantic

    Directory of Open Access Journals (Sweden)

    Paulo R. Medeiros

    2011-01-01

    Full Text Available In recent years, many studies investigated how density-dependent factors, such as shortages in microhabitat and food availability influence the structure of reef fish assemblages. Most of what is currently known, however, comes from comparisons of isolated patch reefs and from correlations between fish abundance and one or few microhabitat variables. In addition, most studies were done in the Caribbean and Indo-Pacific regions, whereas the South Atlantic region has been, to date, understudied. The present study evaluated spatial and temporal variations in reef fish abundance and species richness in a continuous rocky reef and adjacent unconsolidated habitats in a Southwestern Atlantic reef, using underwater techniques to assess both fish numbers and microhabitat variables (depth, rugosity, number of crevices and percent cover of live benthic organisms, bare rock, sand, and limestone. Higher species richness was observed at consolidated substratum stations on both sampling periods (May and October, but fish abundance did not show a significant spatial variation. Topographical complexity and percent cover of algae (except coralline algae were amongst the most important determinants of species richness, and correlations between fish size and refuge crevice size were observed. The non-random patterns of spatial variation in species richness, and to a lesser extent, fish abundance, were related to differences in substratum characteristics and the inherent characteristics of fishes (i.e. habitat preferences and not to geographical barriers restraining fish movement. This study highlights the importance of concomitantly assessing several microhabitat variables to determine their relative influence in reef fish assemblages.Em anos recentes, vários estudos investigaram como os fatores dependentes da densidade, por exemplo, a diminuição na disponibilidade de microhabitats e alimento, influenciam a estrutura das assembleias de peixes. A maior parte do

  14. An assessment of the risk of spreading the fish parasite Gyrodactylus salaris to uninfected territories in the European Union with the movement of live Atlantic salmon (Salmo salar) from coastal waters

    DEFF Research Database (Denmark)

    Peeler, E.; Thrush, M.; Paisley, Larry;

    2006-01-01

    The freshwater, monogenean fish ecto-parasite, Gyrodactylus salaris, was introduced into Norway through the importation of juvenile salmon from Sweden in the 1970s and resulted in dramatic declines in the number of Atlantic salmon (Salmo salar) in 45 Norwegian rivers. From May 1, 2004, a change....... This risk assessment was undertaken to establish whether exports of live Atlantic salmon from coastal sites increased the risk of G. salaris introduction and establishment in uninfected EU territories. A scenario tree of events necessary for the introduction and establishment of the parasite was constructed......). Transmission from seawater sites, where salinity is greater than 25 parts per thousand, is only possible if infected fish were introduced hours before export. Furthermore, transport via wellboat in full-strength seawater (33 parts per thousand) reduced the risk of introduction to a negligible level. Similarly...

  15. 78 FR 23683 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using...

    Science.gov (United States)

    2013-04-22

    ... fisheries data in a timely fashion and would delay the directed fishing closure of Pacific cod for C/Ps..., Acting Deputy Director, Office of Sustainable Fisheries, National Marine Fisheries Service. BILLING...

  16. 77 FR 11412 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Science.gov (United States)

    2012-02-27

    ... a timely fashion and would delay the directed fishing closure of Pacific cod for CVs using trawl... Director, Office of Sustainable Fisheries, National Marine Fisheries Service. BILLING CODE 3510-22-P...

  17. 77 FR 8177 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the...

    Science.gov (United States)

    2012-02-14

    ... a timely fashion and would delay the directed fishing closure of Pacific cod for vessels using pot... Director, Office of Sustainable Fisheries, National Marine Fisheries Service. BILLING CODE 3510-22-P...

  18. 78 FR 18528 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Science.gov (United States)

    2013-03-27

    ... a timely fashion and would delay the directed fishing closure of Pacific cod for CVs using trawl... Director, Office of Sustainable Fisheries, National Marine Fisheries Service. BILLING CODE 3510-22-P...

  19. 78 FR 17885 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Less Than 50...

    Science.gov (United States)

    2013-03-25

    ... a timely fashion and would delay the closure of directed fishing for Pacific cod by CVs less than 50...: March 20, 2013. Kara Meckley, Acting Deputy Director, Office of Sustainable Fisheries, National...

  20. The ecological significance of juvenile Diplodus sargus as ectoparasite fish cleaners in the north-eastern Atlantic

    OpenAIRE

    2015-01-01

    Cleaning behaviour was recently described for the omnivorous species Diplodus sargus. Although previous studies have reported the existence of ectoparasites in the stomach contents of some individuals this commercially important fish was never considered a cleaner species. Here we make the first characterization of this behaviour based on field observations. This behaviour was exclusively performed by juvenile D. sargus and, until now, was only observed in confined or semi-confined areas such...

  1. Spatial transferability of habitat suitability models of Nephrops norvegicus among fished areas in the Northeast Atlantic: sufficiently stable for marine resource conservation?

    Directory of Open Access Journals (Sweden)

    Valentina Lauria

    Full Text Available Knowledge of the spatial distribution and habitat associations of species in relation to the environment is essential for their management and conservation. Habitat suitability models are useful in quantifying species-environment relationships and predicting species distribution patterns. Little is known, however, about the stability and performance of habitat suitability models when projected into new areas (spatial transferability and how this can inform resource management. The aims of this study were to model habitat suitability of Norway lobster (Nephrops norvegicus in five fished areas of the Northeast Atlantic (Aran ground, Irish Sea, Celtic Sea, Scotland Inshore and Fladen ground, and to test for spatial transferability of habitat models among multiple regions. Nephrops burrow density was modelled using generalised additive models (GAMs with predictors selected from four environmental variables (depth, slope, sediment and rugosity. Models were evaluated and tested for spatial transferability among areas. The optimum models (lowest AICc for different areas always included depth and sediment as predictors. Burrow densities were generally greater at depth and in finer sediments, but relationships for individual areas were sometimes more complex. Aside from an inclusion of depth and sediment, the optimum models differed between fished areas. When it came to tests of spatial transferability, however, most of the models were able to predict Nephrops density in other areas. Furthermore, transferability was not dependent on use of the optimum models since competing models were also able to achieve a similar level of transferability to new areas. A degree of decoupling between model 'fitting' performance and spatial transferability supports the use of simpler models when extrapolating habitat suitability maps to different areas. Differences in the form and performance of models from different areas may supply further information on the processes

  2. Multi-decadal scale variability in the eastern Baltic cod fishery 1550-1860 - Evidence and causes

    DEFF Research Database (Denmark)

    MacKenzie, Brian; Bager, M.; Ojaveer, H.;

    2007-01-01

    reduction in cod fishing mortality and suitable hydrographic conditions which promote successful cod reproduction. Historical ecology investigations in the Baltic can contribute to scientifically based fishery and ecosystem management and recovery plans. (c) 2007 Elsevier B.V. All rights reserved....... is unknown, as is the relative role of fishing, climate variability/regimes, eutrophication and reduction of marine mammal predator populations. We have begun to investigate whether historical fisheries information (landings, effort, distribution) from before the 1880s is available in Baltic archives...... affecting cod reproduction and ecology in the Baltic Sea. The recovered data show that the Baltic ecosystem was able to support modest-large cod populations even though it was oligotrophic and contained large populations of cod predators (e.g., marine mammals). Current ecosystem management policy...

  3. Diel changes in food and feeding activity of sciaenid fishes from the South-western Atlantic, Brazil.

    Science.gov (United States)

    Soares, L S; Vazzoler, A E

    2001-05-01

    Food habits and daily feeding activity of fish populations are important ecological variables for understanding their role in the ecosystem. Diel changes in feeding activity and dietary composition of juvenile whitemouth croaker Micropogonias furnieri, shortfin corvina Isopisthus parvipinnis, shorthead drum Larimus breviceps and of juvenile and adult banded croaker Paralonchurus brasiliensis were investigated from samples taken over a 24 hours period from 4 to 5 September 1987 on the continental shelf off South-eastern Brazil. Whitemouth croaker and banded croaker had a benthic diet based on polychaetes and some caridean shrimps and showed no diel feeding pattern. Shortfin corvina and shorthead drum fed on crustaceans and teleostean fish, the former species primarily on pelagic sergestid shrimps and benthic caridean shrimps, and the latter mainly on pelagic sergestid shrimps, mysidacean and benthic caridean shrimps. Shortfin corvina is primarily a diurnal feeder, but preyed on some items only at night. Shorthead drum is a night feeder, with minimum stomach fullness values between dawn and daytime, and maximum values between dusk and night time.

  4. Effects of tourist visitation and supplementary feeding on fish assemblage composition on a tropical reef in the Southwestern Atlantic

    Directory of Open Access Journals (Sweden)

    Martina Di Iulio Ilarri

    Full Text Available The effects of tourist visitation and food provisioning on fish assemblages were assessed by visual censuses (stationary technique carried out in a tropical reef in Northeastern Brazil. Comparisons of species abundance, richness, equitability, and trophic structure in the presence (PT and absence (AT of tourists suggest that tourist visitation and supplementary food influenced the structure of the fish assemblage, as follows: (a diversity, equitability and species richness were significantly higher on the AT period, while the abundance of a particular species was significantly higher during PT; (b trophic structure differed between the AT and PT periods, omnivores being more abundant during the latter period, while mobile invertivores, piscivores, roving herbivores and territorial herbivores were significantly more abundant on AT. Reef tourism is increasingly being regarded as an alternative to generate income for human coastal communities in the tropics. Therefore, closer examination of the consequences of the various components of this activity to reef system is a necessary step to assist conservation and management initiatives.

  5. Floriceps saccatus plerocerci (Trypanorhyncha, Lacistorhynchidae) as parasites of dolphin fish (Coryphaena hippurus L.) and pompano dolphin (Coryphaena equiselis L.) in western Mediterranean and eastern Atlantic waters. Ecological and biological aspects.

    Science.gov (United States)

    Carbonell, E; Castro, J J; Massutí, E

    1998-10-01

    A study of the plerocerci of Floriceps saccatus from the abdominal cavity of dolphin fish (Coryphaena hippurus) and pompano dolphin (Coryphaena equiselis) was conducted. In all, 565 dolphin fishes were collected from Majorcan waters (Balearic Islands, western Mediterranean) during 3 summer and autumn seasons (1990, 1991, and 1995). From the Canary Islands (eastern Atlantic), 41 specimens of dolphin fish were caught during 1994 and 49 specimens of pompano dolphin during 1995. Cysts of different shapes and sizes appeared in the conjunctive tissues of the abdomen and viscera, mainly in the liver, gonads, and pancreas. A larva was found inside every cyst examined. Small, medium size, and large larvae were found. The largest larvae correspond to Floriceps saccatus plerocercoids. Stomach contents indicated that crustaceans and fish larvae were the main prey items of juvenile C. hippurus, whereas teleosts and cephalopods were the only food found in adult dolphin fishes. Infection of F. saccatus plerocercoids takes place in preadult dolphin fishes. Prevalence increases as fishes grow and change to a diet of teleosts. Coryphaena equiselis was not infected.

  6. Atlantic Flyway Breeding Waterfowl Survey

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — The Atlantic Flyway Technical Section initiated this breeding waterfowl survey in 11 northeast states ranging from New Hampshire to Virginia.

  7. Characteristics of fishing operations, environment and life history contributing to small cetacean bycatch in the northeast Atlantic.

    Directory of Open Access Journals (Sweden)

    Susie Brown

    Full Text Available Fisheries bycatch is a key threat to cetacean species globally. Managing the impact requires an understanding of the conditions under which animals are caught and the sections of the population affected. We used observer data collected on an albacore tuna gillnet fishery in the northeast Atlantic, to assess operational and environmental factors contributing to bycatch of common and striped dolphins, using generalised linear models and model averaging. Life history demographics of the captured animals were also investigated. In both species, young males dominated the catch. The age ratio of common dolphins was significantly different from that estimated for the population in the region, based on life tables (G = 17.1, d.f. = 2, p = 0.002. Skewed age and sex ratios may reflect varying vulnerability to capture, through differences in behaviour or segregation in populations. Adult females constituted the second largest portion of the bycatch for both species, with potential consequences for population sustainability. Depth was the most important parameter influencing bycatch of both species and reflected what is known about common and striped dolphin habitat use in the region as the probability of catching common dolphins decreased, and striped dolphins increased, with increasing depth. Striped dolphin capture was similarly influenced by the extent to which operations were conducted in daylight, with the probability of capture increasing with increased operations in the pre-sunset and post-sunrise period, potentially driven by increased ability of observers to record animals during daylight operations, or by diurnal movements increasing contact with the fishery. Effort, based on net length and soak time, had little influence on the probability of capturing either species. Our results illustrate the importance of assessing the demographic of the animals captured during observer programmes and, perhaps more importantly, suggest that effort

  8. Detection of arsenic-containing hydrocarbons in a range of commercial fish oils by GC-ICPMS analysis.

    Science.gov (United States)

    Sele, Veronika; Amlund, Heidi; Berntssen, Marc H G; Berntsen, Jannicke A; Skov, Kasper; Sloth, Jens J

    2013-06-01

    The present study describes the use of a simple solid-phase extraction procedure for the extraction of arsenic-containing hydrocarbons from fish oil followed by analysis using gas chromatography (GC) coupled to inductively coupled plasma mass spectrometry (ICPMS). The procedure permitted the analysis of a small sample amount, and the method was applied on a range of different commercial fish oils, including oils of anchovy (Engraulis ringens), Atlantic herring (Clupea harengus), sand eel (Ammodytes marinus), blue whiting (Micromesistius poutassou) and a commercial mixed fish oil (mix of oils of Atlantic herring, Atlantic cod (Gadus morhua) and saithe (Pollachius virens)). Total arsenic concentrations in the fish oils and in the extracts of the fish oils were determined by microwave-assisted acid digestion and ICPMS. The arsenic concentrations in the fish oils ranged from 5.9 to 8.7 mg kg(-1). Three dominant arsenic-containing hydrocarbons in addition to one minor unidentified compound were detected in all the oils using GC-ICPMS. The molecular structures of the arsenic-containing hydrocarbons, dimethylarsinoyl hydrocarbons (C17H38AsO, C19H42AsO, C23H38AsO), were verified using GC coupled to tandem mass spectrometry (MS/MS), and the accurate masses of the compounds were verified using quadrupole time-of-flight mass spectrometry (qTOF-MS). Additionally, total arsenic and the arsenic-containing hydrocarbons were studied in decontaminated and in non-decontaminated fish oils, where a reduced arsenic concentration was seen in the decontaminated fish oils. This provided an insight to how a decontamination procedure originally ascribed for the removal of persistent organic pollutants affects the level of arsenolipids present in fish oils.

  9. Replacement of fish oil with a DHA-rich algal meal derived from Schizochytrium sp. on the fatty acid and persistent organic pollutant levels in diets and flesh of Atlantic salmon (Salmo salar, L.) post-smolts.

    Science.gov (United States)

    Sprague, M; Walton, J; Campbell, P J; Strachan, F; Dick, J R; Bell, J G

    2015-10-15

    The replacement of fish oil (FO) with a DHA-rich Schizochytrium sp. algal meal (AM) at two inclusion levels (11% and 5.5% of diet) was tested in Atlantic salmon post-smolts compared to fish fed a FO diet of northern (NFO) or southern hemisphere (SFO) origin. Fish were preconditioned prior to the 19-week experimental feeding period to reduce long-chain polyunsaturated fatty acid (LC-PUFA) and persistent organic pollutant levels (POPs). Dietary POP levels differed significantly between treatments in the order of NFO>SFO>11 AM/5.5 AM and were subsequently reflected in the flesh. Fish fed the 11 AM diet contained similar DHA levels (g 100 g(-1) flesh) to FO-fed fish, despite percentage differences. However, the low levels of EPA in the diets and flesh of algal-fed fish compromised the overall nutritional value to the final consumer. Nevertheless, further developments in microalgae culture offer a promising alternative lipid source of LC-PUFA to FO in salmon feeds that warrants further investigation.

  10. TaqMan DNA technology confirms likely overestimation of cod (Gadus morhua L.) egg abundance in the Irish Sea: implications for the assessment of the cod stock and mapping of spawning areas using egg-based methods.

    Science.gov (United States)

    Fox, C J; Taylor, M I; Pereyra, R; Villasana, M I; Rico, C

    2005-03-01

    Recent substantial declines in northeastern Atlantic cod stocks necessitate improved biological knowledge and the development of techniques to complement standard stock assessment methods (which largely depend on accurate commercial catch data). In 2003, an ichthyoplankton survey was undertaken in the Irish Sea and subsamples of 'cod-like' eggs were analysed using a TaqMan multiplex, PCR (polymerase chain reaction) assay (with specific probes for cod, haddock and whiting). The TaqMan method was readily applied to the large number of samples (n = 2770) generated during the survey and when combined with a manual DNA extraction protocol had a low failure rate of 6%. Of the early stage 'cod-like' eggs (1.2-1.75 mm diameter) positively identified: 34% were cod, 8% haddock and 58% whiting. As previous stock estimates based on egg surveys for Irish Sea cod assumed that the majority of 'cod-like' eggs were from cod, the TaqMan results confirm that there was probably substantial contamination by eggs of whiting and haddock that would have inflated estimates of the stock biomass.

  11. Effects of tourist visitation and supplementary feeding on fish assemblage composition on a tropical reef in the Southwestern Atlantic

    Directory of Open Access Journals (Sweden)

    Martina Di Iulio Ilarri

    2008-12-01

    Full Text Available The effects of tourist visitation and food provisioning on fish assemblages were assessed by visual censuses (stationary technique carried out in a tropical reef in Northeastern Brazil. Comparisons of species abundance, richness, equitability, and trophic structure in the presence (PT and absence (AT of tourists suggest that tourist visitation and supplementary food influenced the structure of the fish assemblage, as follows: (a diversity, equitability and species richness were significantly higher on the AT period, while the abundance of a particular species was significantly higher during PT; (b trophic structure differed between the AT and PT periods, omnivores being more abundant during the latter period, while mobile invertivores, piscivores, roving herbivores and territorial herbivores were significantly more abundant on AT. Reef tourism is increasingly being regarded as an alternative to generate income for human coastal communities in the tropics. Therefore, closer examination of the consequences of the various components of this activity to reef system is a necessary step to assist conservation and management initiatives.Os efeitos da visitação turística e da alimentação suplementar sobre a ictiocenose foram avaliados por meio de censos visuais (técnica estacionária em um recife tropical no nordeste do Brasil. Comparações entre a abundância das espécies, riqueza, equitabilidade e estrutura trófica na presença (PT e na ausência (AT de turistas sugerem que a visitação turística e a alimentação suplementar influenciam a estrutura da ictiocenose, como segue: (a diversidade, equitabilidade e riqueza de espécies foram significativamente maiores no período AT, enquanto a abundância de uma única espécie foi significativamente maior durante o período PT; (b a estrutura trófica foi diferente entre os períodos AT e PT, com os onívoros sendo mais abundantes no último período, enquanto invertívoros móveis, pisc

  12. Spatial management of marine resources can enhance the recovery of predators and avoid local depletion of forage fish

    DEFF Research Database (Denmark)

    Eero, Margit; Vinther, Morten; Haslob, Holger;

    2012-01-01

    fish, i.e., sprat and herring, is historic low in this area, which in combination with increasing cod stock results in locally high predation mortality of forage fish and cannibalism of cod. In line with low prey availability, body weight and nutritional condition of cod drastically declined...

  13. Spatial management of marine resources can enhance the recovery of predators and avoid local depletion of forage fish

    DEFF Research Database (Denmark)

    Eero, Margit; Vinther, Morten; Haslob, Holger

    2012-01-01

    fish, i.e., sprat and herring, is historic low in this area, which in combination with increasing cod stock results in locally high predation mortality of forage fish and cannibalism of cod. In line with low prey availability, body weight and nutritional condition of cod drastically declined...

  14. Lessons for fisheries management from the EU cod recovery plan

    DEFF Research Database (Denmark)

    Kraak, S.B.M.; Bailey, N.; Cardinale, M.;

    2013-01-01

    Member States to 'buy back' or increase fishing effort for fleet segments engaged in cod-avoidance measures. The stipulated fishing mortality reductions have not been achieved. On the positive side, the 'buy-back' instrument has led to increased uptake of selective gear and implementation of permanent...... in targeted fisheries, although fishers experienced them as prohibiting the full uptake of other quotas. Recommendations for future plans include (i) management through catch rather than landings quotas, (ii) the internalisation of the costs of exceeding quotas, (iii) use of more selective gear types, (iv......) the development of appropriate metrics as a basis for regulatory measures and for evaluations, (v) participatory governance, (vi) fishery-based management, (vii) flexibility in fishing strategy at vessel level...

  15. Effects from offshore oil production: chronic exposure of fish to produced water

    Energy Technology Data Exchange (ETDEWEB)

    Holth, Tor Fredrik

    2009-07-01

    The results of this study demonstrated that environmentally relevant levels of components of produced water may affect condition factor, maturation, biochemical processes and gene expression in fish. The usefulness of bile PAH and AP metabolite measurements to evaluate exposure was demonstrated in two fish species. The development of bio marker responses was shown to depend on exposure regime as well as exposure period. Lysosomal stability (LMS) in cod kidney was related to dose, the effects were observed early (within two weeks) and remained at a stable level throughout the exposure period in fish receiving both continuous and pulsed exposure. Thus, LMS appeared to be a useful marker for effects in Atlantic cod. Formation of DNA adducts in female cod liver was also related to dose, but in contrast to LMS, more than 16 weeks was required for formation of significant levels. This parameter may therefore be underestimated following short-term exposures, such as most offshore fish caging studies (often 4-6 weeks). Although a time-dependent increase was observed, it also required a continuous exposure regime, which is not often observed in the environment. Other bio markers were demonstrated either to adapt or appeared to be insensitive to the exposures. CYP1A activity (EROD) in female cod was responsive on occasion, but a reduction of activity over time was observed. Protein levels of vitellogenin and hepatic CYP1A in zebra fish, as well as AOX in cod kidneys, were not affected in the current study. Gene transcription of several distinct cellular mechanisms was clearly affected in both species, and a predominance of differentially expressed genes in zebra fish was down regulated. This indicated that down-regulation of responsive pathways may be as important or more important than up-regulation. As both presence and absence of effects following pulsed exposure were apparent (DNA adduct formation; oocyte maturation; condition factor), the effects of exposure regime on

  16. Parasites as biological tags in marine fisheries research: European Atlantic waters.

    Science.gov (United States)

    Mackenzie, K; Hemmingsen, W

    2015-01-01

    Studies of the use of parasites as biological tags for stock identification and to follow migrations of marine fish, mammals and invertebrates in European Atlantic waters are critically reviewed and evaluated. The region covered includes the North, Baltic, Barents and White Seas plus Icelandic waters, but excludes the Mediterranean and Black Seas. Each fish species or ecological group of species is treated separately. More parasite tag studies have been carried out on Atlantic herring Clupea harengus than on any other species, while cod Gadus morhua have also been the subject of many studies. Other species that have been the subjects of more than one study are: blue whiting Micromesistius poutassou, whiting Merlangius merlangus, haddock Melanogrammus aeglefinus, Norway pout Trisopterus esmarkii, horse mackerel Trachurus trachurus and mackerel Scomber scombrus. Other species are dealt with under the general headings redfishes, flatfish, tunas, anadromous fish, elasmobranchs, marine mammals and invertebrates. A final section highlights how parasites can be, and have been, misused as biological tags, and how this can be avoided. It also reviews recent developments in methodology and parasite genetics, considers the potential effects of climate change on the distributions of both hosts and parasites, and suggests host-parasite systems that should reward further research.

  17. 75 FR 44938 - Atlantic Coastal Fisheries Cooperative Management Act Provisions; Atlantic Coastal Shark Fishery

    Science.gov (United States)

    2010-07-30

    ... 0648-XX28 Atlantic Coastal Fisheries Cooperative Management Act Provisions; Atlantic Coastal Shark... cancellation of the Federal moratorium on fishing for Atlantic coastal sharks in the State waters of New Jersey... Sharks (Coastal Shark Plan). DATES: Effective July 30, 2010. ADDRESSES: Emily Menashes, Acting...

  18. New type of canned cod gonads and liver pastes

    Directory of Open Access Journals (Sweden)

    Grokhovsky V. A.

    2016-09-01

    Full Text Available The urgency of rational way of processing the offal of the Gadidae family (liver and gonads for food purposes has been proved. The possibility of using the frozen gonads (milt and caviar and the liver of the cod in the human nutrition (especially for the people of elderly age has been researched. The frozen gonads with addition of fish liver are proven to be used for producing the canned foods with high quality level. The physical, chemical and microbiological characteristics of the product have been determined by the standardized methods. The quality level of canned foods has been obtained using the developed criteria of the objective evaluation of the quality. The specimens of the canned pastes produced from the frozen cod milt, caviar and liver using different compositions have been researched. Near-to-optimal composition of the new product has been defined. The quality level of canned food is 88.6 %. The commercial sterility of the canned food specimens prepared using the developed technology has been established. The chemical composition and the sensory characteristics of canned food have been researched. It has been established that protein content in the canned food is 12.9 %, fat content – 13.5 %, water content – 71.2 %, sodium chloride content – 1.3 %, carbohydrates content – 0.5 %. The product is the uniform, finely ground, evenly mixed mass with the presence of the separate caviar grains. The color of the paste is light-beige. The canned food has the tender consistency, pleasant taste and aroma. The energy value of the product is 678 kJ (162 kcal. Using the frozen cod caviar, milt and liver for producing the developed assortment of canned foods will make it possible to solve the problem of the complex processing of fish, and also to manufacture the canned food of high quality on the shore enterprises from the frozen fish offal (caviar, milt and liver all the year round.

  19. Improved management based on stock identification of eastern and western Baltic cod

    DEFF Research Database (Denmark)

    Hüssy, Karin; Bastardie, Francois; Eero, Margit;

    ) within the “Western” cod’s management unit was documented using high-powered genetic tools. The majority (91%) of all spawning fish caught in SD 24 in 2011 were “Eastern” cod and only 9% were from the “Western” stock. The results suggest that the stock structure in the Arkona Basin is highly influenced...... with a change in “Eastern” cod’s spawning behaviour. Management: The stock mixing proportions were successfully implemented in DTU Aqua’s modeling framework for management scenarios. “Eastern” immigrants into SD 24 lead the management procedure to advice for higher TACs that enhance the pressure on the fishing......The objective of this project was to establish an empirically founded knowledge base for the sustainable exploitation of the western Baltic cod stock by including the complex stock structure and migration patterns. Stock mapping: Extensive immigration of “Eastern” cod into the Arkona Basin (SD 24...

  20. Contracaecum osculatum and other anisakid nematodes in grey seals and cod in the Baltic Sea

    DEFF Research Database (Denmark)

    Zuo, S; Kania, P W; Mehrdana, F

    2017-01-01

    Populations of grey seals (Halichoerus grypus), sprats (Sprattus sprattus) and cod (Gadus morhua) in the Baltic Sea are relatively stationary. The present work, applying classical and molecular helminthological techniques, documents that seals and cod also share a common parasite, the anisakid...... anisakid nematodes Pseudoterranova decipiens and Anisakis simplex are also found in both seals and cod in the Baltic Sea, but at much lower rates. The Baltic grey seal population was left at a critically low level (comprising a few hundred individuals) during the latter part of the 20th century, but since...... the year 2000 a marked increase in the population has been observed, reaching more than 40,000 individuals at present. Ecological consequences of the increased seal abundance may result from increased predation on fish stocks, but recent evidence also points to the influence of elevated parasitism on fish...

  1. Under-ice distribution of polar cod Boreogadus saida in the central Arctic Ocean and their association with sea-ice habitat properties

    NARCIS (Netherlands)

    David, Carmen; Lange, Benjamin; Krumpen, Thomas; Schaafsma, F.L.; Franeker, van J.A.; Flores, H.

    2016-01-01

    In the Arctic Ocean, sea-ice habitats are undergoing rapid environmental change. Polar cod (Boreogadus saida) is the most abundant fish known to reside under the pack-ice. The under-ice distribution, association with sea-ice habitat properties and origins of polar cod in the central Arctic Ocean,

  2. Under-ice distribution of polar cod Boreogadus saida in the central Arctic Ocean and their association with sea-ice habitat properties

    NARCIS (Netherlands)

    David, Carmen; Lange, Benjamin; Krumpen, Thomas; Schaafsma, F.L.; Franeker, van J.A.; Flores, H.

    2016-01-01

    In the Arctic Ocean, sea-ice habitats are undergoing rapid environmental change. Polar cod (Boreogadus saida) is the most abundant fish known to reside under the pack-ice. The under-ice distribution, association with sea-ice habitat properties and origins of polar cod in the central Arctic Ocean, ho

  3. ATP, IMP, and glycogen in cod muscle at onset and during development of rigor mortis depend on the sampling location

    DEFF Research Database (Denmark)

    Cappeln, Gertrud; Jessen, Flemming

    2002-01-01

    Variation in glycogen, ATP, and IMP contents within individual cod muscles were studied in ice stored fish during the progress of rigor mortis. Rigor index was determined before muscle samples for chemical analyzes were taken at 16 different positions on the fish. During development of rigor, the...

  4. New species in the genus Francisella (Gammaproteobacteria; Francisellaceae); Francisella piscicida sp. nov. isolated from cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Ottem, Karl F; Nylund, Are; Karlsbakk, Egil

    2007-01-01

    A Francisella strain, GM2212, previously isolated from moribund farmed Atlantic cod (Gadus morhua) in Norway, is closely related to Francisella philomiragia among Francisella spp. according to its complete 16S rDNA, 16S-23S intergenic spacer, 23S rDNA, 23S-5S intergenic spacer, 5S rDNA, Fop...

  5. The effect of COD loading on the granule-based enhanced biological phosphorus removal system and the recoverability.

    Science.gov (United States)

    Yu, Shenjing; Sun, Peide; Zheng, Wei; Chen, Lujun; Zheng, Xiongliu; Han, Jingyi; Yan, Tao

    2014-11-01

    In this study, the effect of varied COD loading (200, 400, 500, 600 and 800 mg L(-1)) on stability and recoverability of granule-based enhanced biological phosphorus removal (EBPR) system was investigated during continuously 53-d operation. Results showed that COD loading higher than 500 mg L(-1) could obviously deteriorate the granular EBPR system and result in sludge bulking with filamentous bacteria. High COD loading also changed the transformation patterns of poly-β-hydroxyalkanoates (PHAs) and glycogen in metabolism process of polyphosphate-accumulating organisms (PAOs) and inhibited the EPS secretion, which completely destroyed the stability and integrality of granules. Results of FISH indicated that glycogen-accumulating organisms (GAOs) and other microorganisms had a competitive advantage over PAOs with higher COD loading. The community composition and EBPR performance were recovered irreversibly in long time operation when COD loading was higher than 500 mg L(-1). Copyright © 2014 Elsevier Ltd. All rights reserved.

  6. Eastern Baltic cod in distress: biological changes and challenges for stock assessment

    DEFF Research Database (Denmark)

    Eero, Margit; Hjelm, Joakim; Behrens, Jane;

    2015-01-01

    The eastern Baltic (EB) cod (Gadus morhua) stock was depleted and overexploited for decades until the mid-2000s, when fishing mortality rapidly declined and biomass started to increase, as shown by stock assessments. These positive developments were partly assigned to effective management measure...

  7. Foraging behavior of larval cod ( Gadus morhua ) influenced by prey density and hunger

    DEFF Research Database (Denmark)

    Munk, Peter

    1995-01-01

    Fish larvae meet diverse environmental conditions at sea, and larval growth and chance of survival depend on a flexible response to environmental variability. The present study focuses on the flexibility of the foraging behaviour of larval cod in a series of laboratory experiments on larval search...

  8. Hydrographic influence on the spawning habitat suitability of western Baltic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Hüssy, K.; Hinrichsen, H.-H.; Huwer, B.

    2012-01-01

    Hydrographic influence on the spawning habitat suitability of western Baltic cod (Gadus morhua) – ICES Journal of Marine Science, 69: 1736–1743.Recruitment variability of marine fish is influenced by the reproductive potential of the stock (i.e. stock characteristics and abundance) and the surviv...

  9. Status and future perspectives of vaccines for industrialised fin-fish farming.

    Science.gov (United States)

    Brudeseth, Bjørn Erik; Wiulsrød, Rune; Fredriksen, Børge Nilsen; Lindmo, Karine; Løkling, Knut-Egil; Bordevik, Marianne; Steine, Nils; Klevan, Are; Gravningen, Kjersti

    2013-12-01

    Fin fish farming is developing from extensive to intensive high industrial scale production. Production of fish in high-density growth conditions requires effective vaccines in order to control persistent and emerging diseases. Vaccines can also have significant positive impact on the reduced usage of antibiotics. This was demonstrated when vaccines were introduced in Norway for Atlantic salmon (Salmo salar) in the late eighties and early nineties, resulting in a rapid decline of antibiotics consumption. The present review will focus on current vaccine applications for farmed industrialized fish species such as Atlantic salmon, coho salmon (Oncorhynchus kisutch), rainbow trout (Oncorhynchus mykiss), ayu (Plecoglossus altivelis), cod (Gadus morhua), sea bass (Dicentrarchus labrax), gilt-head sea bream (Sparus aurata), yellowtail (Seriola quinqueradiata), great amberjack (Seriola dumerili), barramundi (Lates calcarifer), japanese flounder (Paralichythys olivaceus), turbot (Scophthalmus maximus), red sea bream (Pagrus major), rock bream (Oplegnathus fasciatus), seven band grouper (Epinephelus septemfasciatus), striped catfish (Pangasianodon hypophthalmus), channel catfish (Ictalurus punctatus) and tilapia (Oreochromis niloticus). This paper will review the current use of licensed vaccines in fin fish farming and describe vaccine administration regimes including immersion, oral and injection vaccination. Future trends for inactivated-, live attenuated - and DNA - vaccines will also be discussed.

  10. FISH SPECIES and Other Data from MULTIPLE SHIPS From NW Atlantic (limit-40 W) from 19740603 to 19750602 (NODC Accession 8300071)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Spawing season data of Mid-Atlantic finfish, collected by various ships (Delaware II, Albatross II, Atl. Twin, Xiphias, and the Rorqual) as part of study "The...

  11. Life history tactics of Atlantic salmon in Newfoundland

    OpenAIRE

    Gibson, John; Haedrich, Richard

    2006-01-01

    Popular articles about the Atlantic salmon (Salmo salar) usually state that ‘the Atlantic salmon is an anadromous species’, e.g. publications by the Atlantic Salmon Federation (North America), Atlantic Salmon Trust (UK), and WWF (World Wildlife Fund), and the life history is depicted as migration of juveniles from fresh water to the marine environment, with a return to where the fish were born as spawning adults. This article reviews the life history tactics of Atlantic salmon in Newfoundland...

  12. Cod avoidance by area regulations in Kattegat

    DEFF Research Database (Denmark)

    Eliasen, Søren Qvist

    2014-01-01

    presents two initiatives for cod avoidance in Kattegat; a fisher initiative sharing information about cod bycatch which could lead to real time closures in areas with high bycatch of juveniles, for vessels with low cod quota to avoid catch of all cod, and a Danish Swedish Government initiative of permanent......The article examines the experiences of two initiatives of cod avoidance by area regulations in the Kattegat in the light of the upcoming discard ban in EU fisheries. The first section highlights elements of the discard ban in the reformed EU Common Fisheries Policy (CFP). The second section...... and temporary area closures in Kattegat. The third section discusses the lessons learned in the light of implementation of the discard ban. The fourth section sums up the lessons learned; Regional measures of implementation of the discard ban should include all vessels with quota in the region to be regarded...

  13. AFSC/REFM: Pacific cod Localized Depletion Study

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Data from Localized Depletion study for Pacific cod 2001-2005. Study was conducted using cod pot gear to measure localized abundance of Pacific cod inside and...

  14. Diet × genotype interactions in hepatic cholesterol and lipoprotein metabolism in Atlantic salmon (Salmo salar) in response to replacement of dietary fish oil with vegetable oil.

    Science.gov (United States)

    Morais, Sofia; Pratoomyot, Jarunan; Torstensen, Bente E; Taggart, John B; Guy, Derrick R; Bell, J Gordon; Tocher, Douglas R

    2011-11-01

    The present study investigates the effects of genotype on responses to alternative feeds in Atlantic salmon. Microarray analysis of the liver transcriptome of two family groups, lean or fat, fed a diet containing either a fish oil (FO) or a vegetable oil (VO) blend indicated that pathways of cholesterol and lipoprotein metabolism might be differentially affected by the diet depending on the genetic background of the fish, and this was further investigated by real-time quantitative PCR, plasma and lipoprotein biochemical analysis. Results indicate a reduction in VLDL and LDL levels, with no changes in HDL, when FO is replaced by VO in the lean family group, whereas in fat fish fed FO, levels of apoB-containing lipoproteins were low and comparable with those fed VO in both family groups. Significantly lower levels of plasma TAG and LDL-TAG were measured in the fat group that was independent of diet, whereas plasma cholesterol was significantly higher in fish fed the FO diet in both groups. Hepatic expression of genes involved in cholesterol homeostasis, β-oxidation and lipoprotein metabolism showed relatively subtle changes. A significantly lower expression of genes considered anti-atherogenic in mammals (ATP-binding cassette transporter A1, apoAI, scavenger receptor class B type 1, lipoprotein lipase (LPL)b (TC67836) and LPLc (TC84899)) was found in lean fish, compared with fat fish, when fed VO. Furthermore, the lean family group appeared to show a greater response to diet composition in the cholesterol biosynthesis pathway, mediated by sterol-responsive element-binding protein 2. Finally, the presence of three different transcripts for LPL, with differential patterns of nutritional regulation, was demonstrated.

  15. Environmental risk assessment of alkylphenols from offshore produced water on fish reproduction.

    Science.gov (United States)

    Beyer, Jonny; Myhre, Lars Petter; Sundt, Rolf C; Meier, Sonnich; Tollefsen, Knut-Erik; Vabø, Rune; Klungsøyr, Jarle; Sanni, Steinar

    2012-04-01

    Concern has been raised over whether environmental release of alkylphenols (AP) in produced water (PW) discharges from the offshore oil industry could impose a risk to the reproduction of fish stocks in the North Sea. An environmental risk assessment (ERA) was performed to determine if environmental exposure to PW APs in North Sea fish populations is likely to be high enough to give effects on reproduction endpoints. The DREAM (Dose related Risk and Effect Assessment Model) software was used in the study and the inputs to the ERA model included PW discharge data, fate information of PW plumes, fish distribution information, as well as uptake and elimination information of PW APs. Toxicodynamic data from effect studies with Atlantic cod (Gadus morhua) exposed to APs were used to establish a conservative environmental risk threshold value for AP concentration in seawater. By using the DREAM software to 1) identify the areas of highest potential risk and 2) integrate fish movement and uptake/elimination rates of APs for the chosen areas we found that the environmental exposure of fish to APs from PW is most likely too low to affect reproduction in wild populations of fish in the North Sea. The implications related to risk management of offshore PW and uncertainties in the risk assessment performed are discussed.

  16. Isotopic evidence for dead fish maintenance of Florida red tides, with implications for coastal fisheries over both source regions of the West Florida shelf and within downstream waters of the South Atlantic Bight

    Science.gov (United States)

    Walsh, J. J.; Weisberg, R. H.; Lenes, J. M.; Chen, F. R.; Dieterle, D. A.; Zheng, L.; Carder, K. L.; Vargo, G. A.; Havens, J. A.; Peebles, E.; Hollander, D. J.; He, R.; Heil, C. A.; Mahmoudi, B.; Landsberg, J. H.

    2009-01-01

    Toxic Florida red tides of the dinoflagellate Kareniabrevis have downstream consequences of 500-1000 km spatial extent. Fish stocks, shellfish beds, and harmful algal blooms of similar species occupy the same continental shelf waters of the southeastern United States, amounting to economic losses of more than 25 million dollars in some years. Under the aegis of the Center for Prediction of Red tides, we are now developing coupled biophysical models of the conditions that lead to red tides and impacted coastal fisheries, from the Florida Panhandle to Cape Hatteras. Here, a nitrogen isotope budget of the coastal food web of the West Florida shelf (WFS) and the downstream South Atlantic Bight (SAB) reaffirms that diazotrophs are the initial nutrient source for onset of red tides and now identifies clupeid fish as the major recycled nutrient source for their maintenance. The recent isotope budget of WFS and SAB coastal waters during 1998-2001 indicates that since prehistoric times of Timacua Indian settlements along the Georgia coast during 1075, ∼50% of the nutrients required for large red tides of >1 μg chl l -1 of K.brevis have been derived from nitrogen-fixers, with the other half from decomposing dead sardines and herrings. During 2001, >90% of the harvest of WFS clupeids was by large ichthyotoxic red tides of >10 μg chl l -1 of K.brevis, rather than by fishermen. After onset of the usual red tides in summer of 2006 and 2007, the simulated subsequent fall exports of Florida red tides in September 2007 to North Carolina shelf waters replicate observations of just ∼1 μg chl l -1 on the WFS that year. In contrast, the earlier red tides of >10 μg chl l -1 left behind off West Florida during 2006, with less physical export, are instead 10-fold larger than those of 2007. Earlier, 55 fish kills were associated with these coastal red tides during September 2006, between Tampa and Naples. Yet, only six fish kills were reported there in September 2007. With little

  17. 77 FR 32572 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Coral and Coral Reefs Off the...

    Science.gov (United States)

    2012-06-01

    ..., and South Atlantic; Coral and Coral Reefs Off the Southern Atlantic States; Exempted Fishing Permit... South Carolina Aquarium to collect, with certain conditions, various species of reef fish, crabs, and...

  18. Host size-dependent anisakid infection in Baltic cod Gadus morhua associated with differential food preferences

    DEFF Research Database (Denmark)

    Zuo, Shaozhi; Huwer, Bastian; Bahlool, Qusay

    2016-01-01

    sarsi) are preferred food items by small cod, the isopod Saduria entomon is taken by all size classes, and sprat Sprattus sprattus are common prey items for cod larger than 30 cm. Parasitological investigations (microscopic and molecular analyses) of H. sarsi (100 specimens) and S. entomon (40 specimens......) did not reveal infection in these invertebrates, but 11.6% of sprat (265 specimens examined) was shown to be infected with 1-8 C. osculatum third stage larvae per fish. Analyses of sprat stomach contents confirmed that copepods and cladocerans are the main food items of sprat. These observations...

  19. Why is age determination of Baltic cod (Gadus morhua) so difficult?

    DEFF Research Database (Denmark)

    Hüssy, Karin

    2010-01-01

    The aim of this study was to evaluate the consistency of three methods for assigning annuli in adult Baltic cod otoliths. The methods examined were (i) daily increment patterns, (ii) opacity profiles, and (iii) traditional age reading. Frequency distributions of the distance from the nucleus...... to a consistent pattern the following year, and overlap was not influenced by sex or fish size. The results suggest that otolith opacity in Baltic cod is not associated with seasonal patterns in daily increment structure and that traditional age determination based on otolith opacity yields highly uncertain...

  20. Development of international fisheries for the eastern Baltic cod ( Gadus morhua ) from the late 1880s until 1938

    DEFF Research Database (Denmark)

    Eero, Margit; MacKenzie, Brian; Karlsdottir, H.M.;

    2007-01-01

    The paper provides an overview of eastern Baltic cod (Gadus morhua) fisheries from the end of the 1880s until 1938, in order to improve the knowledge of long-term stock dynamics. The data compiled and included in the study comprise catches and economic values of exploited fish species, time series...... of indicators of fishing effort and qualitative information on developments in fishing technology. This information has been assembled for different countries and locations in the Baltic Sea. We first summarize the multi-decadal development of national cod fisheries and their relative importance during...... of the variations in the catches of different countries (e.g. decline in the late 1920s; increase in the late 1930s) were caused by factors other than fishery developments. These factors probably include ecosystem-induced variations in cod population dynamics and need further investigation. (c) 2007 Elsevier B...

  1. Transcriptomic analysis and biomarkers (Rag1 and Igμ) for probing the immune system development in Pacific cod, Gadus macrocephalus.

    Science.gov (United States)

    Mao, Ming-Guang; Li, Xing; Perálvarez-Marín, Alejandro; Jiang, Jie-Lan; Jiang, Zhi-Qiang; Wen, Shi-Hui; Lü, Hui-Qian

    2015-06-01

    Mortality (>90%) is a big concern in larval rearing facilities of Pacific cod, Gadus macrocephalus, limiting its culture presently still in the experimental stages. Understanding the immune system development of G. macrocephalus is crucial to optimize the aquaculture of this species, to improve the use of economic resources and to avoid abuse of antibiotics. For the transcriptome analysis, using an Illumina sequencing platform, 61,775,698 raw reads were acquired. After a de novo assembly, 77,561 unigenes were obtained. We have classified functionally these transcripts by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). 27 genes mainly related to hematopoietic or lymphoid organ development and somatic diversification of immune receptors have been reported for the first time in Pacific cod, and 14 Ig heavy chain (μ chain) locuses were assembled using Trinity. Based on our previous achievement, we have chosen Rag1 and Igμ as immune system development biomarkers. Full length cDNA of Rag1 and Igμ as biomarkers were obtained respectively using RACE PCR. Concerning Rag1, the deduced amino acid of Rag1 and protein immunodetection revealed a Rag1 isoform of 69 kDa, significantly different from other fish orthologs, such as Oncorhynchus mykiss (121 kDa). Phylogenetic analysis reveals a unique immune system for the Gadus genre, not exclusive for Atlantic cod, among vertebrates. Meanwhile, full length cDNA of Igμ included an ORF of 1710 bp and the deduced amino acid was composed of a leader peptide, a variable domain, CH1, CH2, Hinge, CH3, CH4 and C-terminus, which was in accordance with most teleost. Absolute quantification PCR revealed that significant expression of Rag1 appeared earlier than Igμ, 61 and 95 dph compared to 95 dph, respectively. Here we report the first transcriptomic analysis of G. macrocephalus as the starting point for genetic research on immune system development towards improving the Pacific cod aquaculture. Copyright © 2015

  2. Lipid and Fatty Acid Compositions of Cod(Gadus morhua),Haddock(Melanogrammus aeglefinus)and Halibut(Hippogiossus hippoglossus)

    Institute of Scientific and Technical Information of China (English)

    ZENG Duan; MAI Kangsen; AI Qinghui; Joyce E.Milley; Santosh P.Lall

    2010-01-01

    This study was conducted to compare lipid and fatty acid composition of cod,haddock and halibut.Three groups of cod(276 g±61 g),haddock(538 g±83 g)and halibut(3704 g±221 g)were maintained with commercial feeds mainly based on fish meal and marine fish oil for 12 weeks prior to sampling.The fatty acid compositions of muscle and liver were determined by GC/FID after derivatization of extracted lipids into fatty acid methyl esters(FAME).Lipids were also fractionated into neutral and polar lipids using Waters silica Sep-Pak(R).The phospholipid fraction was further separated by high-performance thin-layer chromatography(HPTLC)and the FAME profile was obtained.Results of the present study showed that cod and haddock were lean fish and their total muscle lipid contents were 0.8% and 0.7%,respectively,with phospholipid constituting 83.6% and 87.5% of the total muscle lipid,respectively.Halibut was a medium-fat fish and its muscle lipid content was 8%,with 84% of the total muscle lipid being neutral lipid.Total liver lipid contents of cod,haddock and halibut were 36.9%,67.2% and 30.7%,respectively,of which the neutral lipids accounted for the major fraction(88.1%-97.1%).Polyunsaturated fatty acids were the most abundant in cod and haddock muscle neutral lipid.Monounsaturated fatty acid level was the highest in halibut muscle neutral lipid.Fatty acid compositions of phospholipid were relatively constant.In summary,the liver of cod and haddock as lean fish was the main lipid reserve organ,and structural phospholipid is the major lipid form in flesh.However,as a medium-fat fish,halibut stored lipid in both their liver and muscle.

  3. Turtle cleaners: reef fishes foraging on epibionts of sea turtles in the tropical Southwestern Atlantic, with a summary of this association type

    Directory of Open Access Journals (Sweden)

    Cristina Sazima

    Full Text Available In the present study we record several instances of reef fish species foraging on epibionts of sea turtles (cleaning symbiosis at the oceanic islands of Fernando de Noronha Archipelago and near a shipwreck, both off the coast of Pernambuco State, northeast Brazil. Nine reef fish species and three turtle species involved in cleaning are herein recorded. Besides our records, a summary of the literature on this association type is presented. Postures adopted by turtles during the interaction are related to the habits of associated fishes. Feeding associations between fishes and turtles seem a localized, albeit common, phenomenon.

  4. Using otolith microstructure to analyse growth of juvenile Baltic cod Gadus morhua

    DEFF Research Database (Denmark)

    Hüssy, Karin; Mosegaard, Henrik; Hinrichsen, H.H.

    2003-01-01

    Pelagic and demersal juvenile Baltic cod Gadus morhua L. were collected on the slope and the top of Rønne bank in the Baltic Sea during 2 cruises in November and December 1998. The growth, age at settling and vertical migration pattern were studied by otolith microstructure analysis....... The relationship between fish and otolith size were found to change at settling, with an increase of fish size in relation to otolith size after settling. This change was more pronounced on the slope compared to the top of the bank. The timing of first settling at the 2 localities did not differ with respect...... to fish age. At both localities, fish that hatched early in the season spent a shorter time in the pelagic stage than late-hatched fish. However, significant differences in growth rate during the pelagic stage were observed, where fish captured on the slope grew faster. On the bank, individuals with fast...

  5. EAARL Topography-Cape Cod National Seashore

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Elevation maps (also known as Digital Elevation Models or DEMs) of Cape Cod National Seashore were produced from remotely-sensed, geographically-referenced elevation...

  6. EAARL Topography-Cape Cod National Seashore

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Elevation maps (also known as Digital Elevation Models or DEMs) of Cape Cod National Seashore were produced from remotely-sensed, geographically-referenced elevation...

  7. EAARL Topography-Cape Cod National Seashore

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Elevation maps (also known as Digital Elevation Models or DEMs) of Cape Cod National Seashore were produced from remotely-sensed, geographically-referenced...

  8. Linking lipid dynamics with the reproductive cycle in Baltic cod Gadus morhua

    DEFF Research Database (Denmark)

    Røjbek, Maria; Jacobsen, Charlotte; Tomkiewicz, Jonna

    2012-01-01

    This study describes lipid composition and antioxidants of Baltic cod Gadus morhua L. during the reproductive cycle, and investigates whether they reflect its dominant prey and whether levels of fatty acids important for reproductive performance were low. Reasons for a shift in peak spawning time....... Selective retention of the essential fatty acids docosahexaenoic acid (DHA) and arachidonic acid (ARA) in ovaries during maturation was evident, but despite mobilization from the liver, ARA levels were low in ovaries during late maturation and spawning. Astaxanthin and a-tocopherol accumulated in cod...... ovaries and decreased in late maturing and spawning fish, most likely due to their antioxidant protection activity. The fatty acid composition of cod liver reflected its clupeid prey. The ratio of 18:1n-9 to DHA was almost twice as high in sprat as in herring and indicated the ratio of sprat and herring...

  9. Eastern Baltic cod in distress: biological changes and challenges for stock assessment

    DEFF Research Database (Denmark)

    Eero, Margit; Hjelm, Joakim; Behrens, Jane

    2015-01-01

    with changes in environmental and ecological conditions has led to an unusual situation for cod in the Baltic Sea, which poses new challenges for stock assessment and management advice.Anumber of adverse developments such as low nutritional condition and disappearance of larger individuals indicate......The eastern Baltic (EB) cod (Gadus morhua) stock was depleted and overexploited for decades until the mid-2000s, when fishing mortality rapidly declined and biomass started to increase, as shown by stock assessments. These positive developments were partly assigned to effective management measures......, and the EB cod was considered one of the most successful stock recoveries in recent times. In contrast to this optimistic view, the analytical stock assessment failed in 2014, leaving the present stock status unclear. Deteriorated quality of some basic input data for stock assessment in combination...

  10. Inhibition of p38 MAPK during cellular activation modulate gene expression of head kidney leukocytes isolated from Atlantic salmon (Salmo salar) fed soy bean oil or fish oil based diets.

    Science.gov (United States)

    Holen, E; Winterthun, S; Du, Z-Y; Krøvel, A V

    2011-01-01

    Head kidney leukocytes isolated from Atlantic salmon fed either a diet based on fish oil (FO) or soy bean oil (VO) were used in order to evaluate if different lipid sources could contribute to cellular activation of the salmon innate immune system. A specific inhibitor of p38 MAPK, SB202190, was used to investigate the effect of lipopolysaccharide (LPS) signalling in the head kidney leukocytes. The results show that LPS up regulate IL-1β, TNF-α, Cox2 expression in leukocytes isolated from fish fed either diet. The p38 MAPK inhibitor, SB202190, reduced the LPS induced expression of these genes in both dietary groups. In LPS stimulated leukocytes isolated from VO fed fish, SB202190 showed a clear dose dependent inhibitory effect on IL-1β, TNF-α and Cox2 expression. This effect was also observed for Cox2 in leukocytes isolated from FO fed fish. Furthermore, there was a stronger mean induction of Cox2 in LPS stimulated leucocytes isolated from the VO-group compared to LPS stimulated leukocytes isolated from the FO-group. In both dietary groups, LPS stimulation of salmon head kidney leukocytes increased the induction of CD83, a dendrite cell marker, while the inhibitor reduced CD83 expression in the VO fed fish only. The inhibitor also clearly reduced hsp27 expression in VO fed fish. Indicating a p38 MAPK feedback loop, LPS significantly inhibited the expression of p38MAPK itself in both diets, while SB202190 increased p38MAPK expression especially in the VO diet group. hsp70 expression was not affected by any treatment or feed composition. There were also differences in p38MAPK protein phosphorylation comparing treatment groups but no obvious difference comparing the two dietary groups. The results indicate that dietary fatty acids have the ability to modify signalling through p38 MAPK which may have consequences for the fish's ability to handle infections and stress. Signalling through p38MAPK is ligand dependent and affects gene and protein expression differently.

  11. Hydroacoustic ex situ target strength measurements on juvenile cod ( Gadus morhua L.)

    DEFF Research Database (Denmark)

    Nielsen, J. Rasmus; Lundgren, Bo

    1999-01-01

    fish were swimming freely during measurement in cages (1 x 1 x 3 m) within the acoustic beam under natural conditions in seawater with a salinity of 30 and a temperature of 11 degrees C. An EY500 split-beam acoustic system was used to detect single fish passing through the acoustic beam field, which......) and length of live juvenile cod (7-10 cm and 15-20 cm) at 120 kHz. This was done by recording the variation in TS of freely swimming cod tracking single fish targets for the two size groups within the acoustic beam held. The experiment was set up in an open air 2000 m(3) tank where the small 5-10 cm long...... was Video recorded in order to isolate the measurements on single targets and to get an indication of their angle. A mean target strength-to-size relation was calculated for small cod based on single fish tracks with total acoustic angles below 3.5 degrees off axis in the beam field. This relationship...

  12. Franz Josef Land: extreme northern outpost for Arctic fishes.

    Science.gov (United States)

    Chernova, Natalia V; Friedlander, Alan M; Turchik, Alan; Sala, Enric

    2014-01-01

    The remote Franz Josef Land (FJL) Archipelago is the most northerly land in Eurasia and its fish fauna, particularly in nearshore habitats, has been poorly studied. An interdisciplinary expedition to FJL in summer 2013 used scuba, seines, and plankton nets to comprehensively study the nearshore fish fauna of the archipelago. We present some of the first underwater images for many of these species in their natural habitats. In addition, deep water drop cameras were deployed between 32 and 392 m to document the fish fauna and their associated habitats at deeper depths. Due to its high latitude (79°-82°N), extensive ice cover, and low water temperatures (littoral zone of Kuhn Island, 17 fish species are now known from FJL's nearshore waters. Species endemic to the Arctic accounted for 75% of the nearshore species observed, followed by species with wider ranges. A total of 43 species from 15 families are known from FJL with the majority of the records from offshore trawl surveys between 110 and 620 m. Resident species have mainly high Arctic distributions, while transient species visit the archipelago to feed (e.g., Greenland shark), and others are brought by currents as larvae and later migrate to spawn grounds in the south (e.g., Atlantic cod Gadus morhua, Capelin Mallotus villosus, Beaked redfish Sebastes mentella). Another species group includes warmer-water fishes that are rare waifs (e.g., Glacier lanternfish Benthosema glaciale, White barracudina Arctozenus rissoi). The rapid warming of the Arctic will likely result in significant changes to the entire ecosystem and this study therefore serves as an important baseline for the nearshore fish assemblages in this unique and fragile region.

  13. Fishing effects in northeast Atlantic shelf seas : patterns in fishing effort, diversity and community structure. III. International trawling effort in the North Sea : an analysis of spatial and temporal trends

    DEFF Research Database (Denmark)

    Jennings, S.; Alsväg, J.; Cotter, A.J.R.;

    1999-01-01

    of beam trawling effort increases from north to south. Plots of annual fishing effort by ICES statistical rectangle (211 boxes of 0.5 degrees latitude x 1 degrees longitude) indicate that the majority of fishing effort in the North Sea are concentrated in a very few rectangles. Thus mean annual total...

  14. Identifying eastern Baltic cod nursery grounds using hydrodynamic modelling: knowledge for the design of Marine Protected Areas

    DEFF Research Database (Denmark)

    Hinrichsen, Hans-Harald; Kraus, Gerd; Böttcher, Uwe

    2009-01-01

    Knowledge of the spatial and temporal distribution of juvenile cod is essential to closing the life cycle in population dynamic models, and it is a prerequisite for the design of Marine Protected Areas (MPAs) aiming at the protection of juveniles. In this study, we use a hydrodynamic model...... evidence that the final destinations of juvenile cod drift routes are affected by decadal climate variability. Application of the methodology to MPA design is discussed, e.g. identifying the overlap of areas with a high probability of successful juvenile cod settlement and regions of high fishing effort...... to examine the spatial distribution of eastern Baltic cod larvae and early juveniles. The transport patterns of the larvae spawned at the three major spawning grounds in the central Baltic Sea were investigated by drift model simulations for the period 1979–2004. We analysed potential habitats...

  15. Tissue and size-related changes in the fatty acid and stable isotope signatures of the deep sea grenadier fish Coryphaenoides armatus from the Charlie-Gibbs Fracture Zone region of the Mid-Atlantic Ridge

    Science.gov (United States)

    Mayor, Daniel J.; Sharples, Caroline J.; Webster, Lynda; Walsham, Pamela; Lacaze, Jean-Pierre; Cousins, Nicola J.

    2013-12-01

    Coryphaenoides armatus is a cosmopolitan deep-sea fish that plays a major role in the ecology of abyssal ecosystems. We investigated the trophic ecology and physiology of this species by determining the δ13C, δ15N and fatty acid signatures of muscle, liver and ovary tissues of individuals collected from ∼2700 m to the north and south of the Charlie-Gibbs Fracture Zone (CGFZ) of the Mid-Atlantic Ridge, NE Atlantic. Fatty acid and δ13C data both suggested that C. armatus shows an ontogenetic dietary shift, with the relative contributions of benthic and pelagic prey decreasing and increasing respectively as the animals grow. They also indicated that dietary overlap between animals living to the north and south of the CGFZ increases as they grow, suggesting that larger animals forage over greater distances and are not hindered by the presence of the CGFZ. Comparison of tissue-specific fatty acid signatures with previously published data suggests compositional homeostasis of the fatty acids 20:5(n-3) and 22:6(n-3) in the muscle, and 18:1(n-9) in the liver tissues. We ascribe this primarily to strict physiological requirements for these compounds, rather than simply to their abundance in the diet. We pose several speculative mechanisms to explain the observed trends in tissue-specific δ13C and δ15N values, illustrating some of the numerous processes that can influence the isotopic signatures of bulk tissues.

  16. Are we missing a mineralocorticoid in teleost fish? Effects of cortisol, deoxycorticosterone and aldosterone on osmoregulation, gill Na+,K+-ATPase activity and isoform mRNA levels in Atlantic salmon

    Science.gov (United States)

    McCormick, S.D.; Regish, A.; O'Dea, M. F.; Shrimpton, J.M.

    2008-01-01

    It has long been held that cortisol, acting through a single receptor, carries out both glucocorticoid and mineralocorticoid actions in teleost fish. The recent finding that fish express a gene with high sequence similarity to the mammalian mineralocorticoid receptor (MR) suggests the possibility that a hormone other than cortisol carries out some mineralocorticoid functions in fish. To test for this possibility, we examined the effect of in vivo cortisol, 11-deoxycorticosterone (DOC) and aldosterone on salinity tolerance, gill Na+,K+-ATPase (NKA) activity and mRNA levels of NKA α1a and α1b in Atlantic salmon. Cortisol treatment for 6–14 days resulted in increased, physiological levels of cortisol, increased gill NKA activity and improved salinity tolerance (lower plasma chloride after a 24 h seawater challenge), whereas DOC and aldosterone had no effect on either NKA activity or salinity tolerance. NKA α1a and α1b mRNA levels, which increase in response to fresh water and seawater acclimation, respectively, were both upregulated by cortisol, whereas DOC and aldosterone were without effect. Cortisol, DOC and aldosterone had no effect on gill glucocorticoid receptor GR1, GR2 and MR mRNA levels, although there was some indication of possible upregulation of GR1 by cortisol (p = 0.07). The putative GR blocker RU486 inhibited cortisol-induced increases in salinity tolerance, NKA activity and NKA α1a and α1b transcription, whereas the putative MR blocker spironolactone had no effect. The results provide support that cortisol, and not DOC or aldosterone, is involved in regulating the mineralocorticoid functions of ion uptake and salt secretion in teleost fish.

  17. Parvalbumin--the major tropical fish allergen.

    Science.gov (United States)

    Lim, Dawn Li-Chern; Neo, Keng Hwee; Yi, Fong Cheng; Chua, Kaw Yan; Goh, Denise Li-Meng; Shek, Lynette Pei-Chi; Giam, Yoke Chin; Van Bever, Hugo P S; Lee, Bee Wah

    2008-08-01

    Fish allergy is common in countries where consumption is high. Asian nations are amongst the world's largest consumers of fish but the allergen profiles of tropical fish are unknown. This study sought to evaluate the allergenicity of four commonly consumed tropical fish, the threadfin (Polynemus indicus), Indian anchovy (Stolephorus indicus), pomfret (Pampus chinensis) and tengirri (Scomberomorus guttatus). Immunoglobulin E (IgE) cross-reactivity with parvalbumin of cod fish (Gad c 1), the major fish allergen, was also studied. Detection of tropical fish and cod specific-IgE was performed by UniCap assay, and skin prick tests were also carried out. The IgE-binding components of tropical fish were identified using IgE immunoblot techniques, and cross-reactivity with Gad c 1 was assessed by ELISA inhibition and IgE immunoblot inhibition. Clinically, nine of 10 patients studied were allergic to multiple fish. All patients exhibited detectable specific-IgE to cod fish (10 of 10 skin prick test positive, eight of 10 UniCap assay positive) despite lack of previous exposure. The major allergen of the four tropical fish was the 12-kDa parvalbumin. IgE cross-reactivity of these allergens to Gad c 1 was observed to be moderate to high in the tropical fish studied. Parvalbumins are the major allergens in commonly consumed tropical fish. They are cross-reactive with each other as well as with Gad c 1. Commercial tests for cod fish appear to be sufficient for the detection of tropical fish specific-IgE.

  18. Walking the cod: an investigation into the relative robustness of cod, Gadus morhua, skeletal elements

    Directory of Open Access Journals (Sweden)

    Andrew K.G. Jones

    1999-12-01

    Full Text Available A simple experiment is described which details what happens to the bones of cod when they are walked on by a man. The pattern of fragmentation for various elements is illustrated and an index of robustness proposed for those elements in a cod skeleton most frequently recovered from archaeological sites.

  19. Quantifying relative fishing impact on fish populations based on spatio-temporal overlap of fishing effort and stock density

    DEFF Research Database (Denmark)

    Vinther, Morten; Eero, Margit

    2013-01-01

    GAM analyses to predict local cod densities and combine this with spatio-temporal data of fishing effort based on VMS (Vessel Monitoring System). To quantify local fishing impact on the stock, retention probability of the gears is taken into account. The results indicate a substantial decline...

  20. Theoretical study of the influence of twine thickness on haddock selectivity in diamond mesh cod-ends

    DEFF Research Database (Denmark)

    Herrmann, Bent; O'Neill, F.G.

    2006-01-01

    Using the cod-end simulation model PRESEMO, the influence of twine thickness on cod-end selectivity is investigated. The reduction of lateral mesh opening that arises as a result of both twine bending stiffness and the physical presence of the twine is considered. While it is shown that this leads...... to a reduction in cod-end selectivity with an increase of twine thickness, it does not fully explain the relationship found in the available experimental data.The effect twine thickness may have on the ability of a fish to deform a mesh during the early part of a haul and how netting made of thicker twine may...... discourage a fish from making escape attempts is investigated. The influence that these factors may have is examined and when included in PRESEMO the resulting simulations are a much better representation of the experimental data....

  1. Allergens from fish and egg

    DEFF Research Database (Denmark)

    Poulsen, Lars K.; Hansen, T K; Nørgaard, A

    2001-01-01

    Allergens from fish and egg belong to some of the most frequent causes of food allergic reactions reported in the literature. Egg allergens have been described in both white and yolk, and the egg white proteins ovomucoid, ovalbumin, ovotransferrin and lysozyme have been adopted in the allergen...... nomenclature as Gal d1-d4. The most reported allergen from egg yolk seems to be alpha-livitin. In fish, the dominating allergen is the homologues of Gad c1 from cod, formerly described as protein M. A close cross-reactivity exists within different species of fish between this calcium-binding protein family......, denominated the parvalbumins. This cross-reactivity has been indicated to be of clinical relevance for several species, since patients with a positive double-blind, placebo-controlled food challenge to cod will also react with other fish species, such as herring, plaice and mackerel. In spite...

  2. Location of and post-mortem changes in some cytoskeletal proteins in pork and cod muscle

    DEFF Research Database (Denmark)

    Morrison, E.H.; Bremner, Allan; Purslow, P.P.

    2000-01-01

    The cytoskeletal proteins actin, nebulin, spectrin, desmin, vinculin and talin were labelled immunohistochemically in sections of muscle from commercially available pigs and cod (Gadus morhua) taken pre-rigor and from samples stored for several days. Actin, nebulin and spectrin gave similar...... labelling in fish. Labelling for talin in pork muscle was intense at the sarcolemma but was not present in samples stored for 4 days. In contrast, the label for talin was concentrated at the myotendinous junction of the cod muscle throughout the storage period. These are the first reports of the detection...... and location of spectrin and vinculin in fish muscle and of the location of talin. The results are discussed in terms of muscle structure, function and post-mortem tenderisation. (C) 2000 Society of Chemical Industry....

  3. CHARACTERIZATION OF WESTERN NORTH ATLANTIC RIGHT WHALE SPRING FEEDING HABITAT

    Science.gov (United States)

    The Great South Channel region of the southwestern Gulf of Maine, between George's Bank and Cape Cod, is the primary spring feeding ground for the western North Atlantic population of the I northern right whale, E. glacialis .Since this whale is so endangered, it is critical to i...

  4. CHARACTERIZATION OF WESTERN NORTH ATLANTIC RIGHT WHALE SPRING FEEDING HABITAT

    Science.gov (United States)

    The Great South Channel region of the southwestern Gulf of Maine, between George's Bank and Cape Cod, is the primary spring feeding ground for the western North Atlantic population of the I northern right whale, E. glacialis .Since this whale is so endangered, it is critical to i...

  5. Towards sustainable fisheries of the Öresund cod (Gadus morhua) through sub-stock-specific assessment and management recommendations

    DEFF Research Database (Denmark)

    Lindegren, Martin; Waldo, Staffan; Nilsson, P. Anders;

    2013-01-01

    Fisheries management traditionally relies on stock assessments assuming discrete populations within large administrational areas. However, failing to account for sub-stock structuring may result in overestimation of the stocks' true harvest potential and unsustainable exploitation of small stock...... elements. Atlantic cod (Gadus morhua) frequently occurs in spatially segregated populations, some of which exhibit fine-scaled stock structuring within current management boundaries. Here we use the locally spawning cod stock in the Sound (“Öresund”) as a case study, and perform a sub-stock......-specific assessment to evaluate biological and economic effects of managing the Sound cod as a separate stock. Our results indicate that reducing exploitation pressure, particularly through technical regulations i.e. increasing gill-net mesh sizes, would not only enhance the stock age distribution, but yield long...

  6. Annual and spatial variability in endo- and ectoparasite infections of North Sea cod (Gadus morhua Linnaeus, 1758) larvae, post-larvae and juveniles

    DEFF Research Database (Denmark)

    Mehrdana, Foojan; Bahlool, Qusay Z. M.; Skovgaard, Alf;

    2014-01-01

    A parasitological investigation was performed on a total of 5380 Atlantic cod larvae, post-larvae and small juveniles sampled from the North Sea during a period of five years. The copepod Caligus elongatus (Von Nordmann, 1832) and the nematode Hysterothylacium aduncum (Rudolphi, 1802) were found...

  7. [Omega-3: from cod-liver oil to nutrigenomics].

    Science.gov (United States)

    Caramia, G

    2008-08-01

    The leading role of cod-liver oil on rickets was a relevant factor in the knowledge of this disease. In 1922 the preventive and therapeutic value of cod-liver oil and sunlight against rickets in young infants was confirmed. The seasonal variation in the incidence of rickets, the role of skin pigmentation, of diet and the fact that breast milk was not an adequate source of vitamin D were understood. The discovery of essential fatty acids omega-6 and omega-3 have shown that deficiencies, mainly of omega-3 long chain polyunsaturated fatty acids, result in visual and cognitive impairment and disturbances in mental functions in infants and also in cognitive function in adults, as fatty acids are beneficial to vascular health and may forestall cerebrovascular disease and thus dementia. An adequate ratio of n-6 and n-3 fatty acids may promote a healthier balance of eicosanoids, which would protect membrane function with a nutraceutical function. Dietary lipids not only influence the biophysical state of the cell membranes but, via direct and indirect routes, they also act on multiple pathways including signalling, gene and protein activities, protein modifications and they probably play important role in modulating protein aggregation. Significant advances have been made in understanding the relation between dietary factors and inflammation, which is a central component of many chronic diseases, including coronary artery disease, rheumatoid arthritis, cancer prevention. However, the identification of those who will or will not benefit from dietary intervention strategies remains a major obstacle. Adequate knowledge about how the responses depend on an individual's genetic background (nutrigenetic effects), the cumulative effects of food components on genetic expression profiles through nutrigenomics mechanism, may assist in identifying responders and non-responders. Thus, fish and fish oil consumption might encourage brain development and gene expression to brain

  8. An Oscillating Jet in the Cape Cod Bay

    Science.gov (United States)

    Poulin, F. J.; Flierl, G. R.

    2004-05-01

    During the spring months, the Cape Cod Bay is a roaming ground for the North Atlantic right whale, perhaps the most endangered whale species in the world. The whales are observed to travel along the topographic steps that run parallel to the shore, eating plankton patches that form in the coastal water. In this region, off the coast of Provincetown, there is an oscillatory current with the same period as that of the ambient tides. The location of the current and its periodicity suggest that the topography and tides play fundamental roles in generating the jet. This current, depending on its velocity profile, may become unstable and generate vortices. It is likely that the local surface convergences and divergences in the tidal flows and vortices are related to the aggregation of the copepods (Calanus Finmarchicus), which are the right whale's primary food source. Understanding the dynamics of this jet is essential to predicting the spatial and temporal patterns of the codepods, which will in turn help us understand the likely locations and feeding history of the whales. In this talk we discuss results of the first phase of this study, that of the oscillatory jet in the Cape Cod Bay. This jet is rather complicated since it involves complex topography and coastlines, bottom and lateral friction, stratification and numerous other effects. Rather than study this system in fine detail, we investigate an idealized model that captures the essential features. In the context of this model, we first compute possible profiles for the oscillating jet. We then solve the linear stability problem to determine how the growth rates depend on the various parameters. Finally, and most importantly, we study the nonlinear problem to observe the time evolution of the instability process along with its equilibration. This provides some insight into how the instabilities are related to fluid transport across the shelf.

  9. Topical Formulation Comprising Fatty Acid Extract from Cod Liver Oil: Development, Evaluation and Stability Studies

    OpenAIRE

    2016-01-01

    The purpose of this study was to develop a pharmaceutical formulation containing fatty acid extract rich in free omega-3 fatty acids such as eicosapentaenoic acid and docosahexaenoic acid for topical use. Although the health benefits of cod liver oil and other fish oils taken orally as a dietary supplement have been acknowledged and exploited, it is clear that their use can be extended further to cover their antibacterial properties. In vitro evaluation showed that 20% (v/v) fatty acid extrac...

  10. First attempt to use a remotely operated vehicle to observe soniferous fish behavior in the Gulf of Maine, Western Atlantic Ocean

    Directory of Open Access Journals (Sweden)

    Rodney A. ROUNTREE, Francis JUANES

    2010-02-01

    Full Text Available Underwater sound and video observations were made at noon, sunset, and midnight in sand, gravel, and boulder habitat in the Stellwagen Bank National Marine Sanctuary, Gulf of Maine, USA in October 2001 using a remotely operated vehicle (ROV. Seventeen species of fish and squid were observed with clear habitat and time differences. Observations of feeding behavior, disturbance behavior, and both interspecific and intraspecific interactions provided numerous opportunities for potential sound production; however, sounds were recorded only during a single dive. Although high noise levels generated by the ROV and support ship may have masked some sounds, we conclude that fish sound production in the Gulf of Maine during the fall is uncommon. The recorded fish sounds are tentatively attributed to the cusk Brosme brosme. Cusk sounds consisted variously of isolated thumps, widely spaced thump trains, drumrolls, and their combinations. Frequency peaks were observed at 188, 539, and 1195 Hz. Use of a remotely operated vehicle (ROV as a passive acoustic observation platform was problematic due to high ROV self-noise and the ROV’s inability to maintain a fixed position on the bottom without thruster power. Some fishes were clearly also disturbed by ROV noise, indicating a potential ROV sampling bias. Based on our observations, we suggest that new instruments incorporating both optic and passive acoustic technologies are needed to provide better tools for in situ behavioral studies of cusk and other fishes [Current Zoology 56 (1: 90–99 2010].

  11. Evolution of the immune system influences speciation rates in teleost fishes.

    Science.gov (United States)

    Malmstrøm, Martin; Matschiner, Michael; Tørresen, Ole K; Star, Bastiaan; Snipen, Lars G; Hansen, Thomas F; Baalsrud, Helle T; Nederbragt, Alexander J; Hanel, Reinhold; Salzburger, Walter; Stenseth, Nils C; Jakobsen, Kjetill S; Jentoft, Sissel

    2016-10-01

    Teleost fishes constitute the most species-rich vertebrate clade and exhibit extensive genetic and phenotypic variation, including diverse immune defense strategies. The genomic basis of a particularly aberrant strategy is exemplified by Atlantic cod, in which a loss of major histocompatibility complex (MHC) II functionality coincides with a marked expansion of MHC I genes. Through low-coverage genome sequencing (9-39×), assembly and comparative analyses for 66 teleost species, we show here that MHC II is missing in the entire Gadiformes lineage and thus was lost once in their common ancestor. In contrast, we find that MHC I gene expansions have occurred multiple times, both inside and outside this clade. Moreover, we identify an association between high MHC I copy number and elevated speciation rates using trait-dependent diversification models. Our results extend current understanding of the plasticity of the adaptive immune system and suggest an important role for immune-related genes in animal diversification.

  12. Improving the size- and species selectivity of cod (Gadus morhua) in demersal mixed-species trawl fisheries

    DEFF Research Database (Denmark)

    Krag, Ludvig Ahm

    reduce the catch of cod without simultaneously reduce the catch of the target species. To optimise the trade-off between discard and loss of marketable catch, solutions have to be specific to particular fisheries or populations of fish. Papers 1 and 3 provide specific examples of how size- and species...

  13. Improving the size- and species selectivity of cod (Gadus morhua) in demersal mixed-species trawl fisheries

    DEFF Research Database (Denmark)

    Krag, Ludvig Ahm

    reduce the catch of cod without simultaneously reduce the catch of the target species. To optimise the trade-off between discard and loss of marketable catch, solutions have to be specific to particular fisheries or populations of fish. Papers 1 and 3 provide specific examples of how size- and species...

  14. Spatio-temporal variability in western Baltic cod early life stage survival mediated by egg buoyancy, hydrography and hydrodynamics

    DEFF Research Database (Denmark)

    Hinrichsen, H-H.; Hüssy, K.; Huwer, B.

    2012-01-01

    Spatio-temporal variability in western Baltic cod early life stage survival mediated by egg buoyancy, hydrography and hydrodynamics. – ICES Journal of Marine Science, 69: 1744–1752.To disentangle the effects of different drivers on recruitment variability of marine fish, a spatially and temporally...

  15. A surgical method for implanting transmitters with sensors into the body cavity of cod (Gadus morhua L.)

    DEFF Research Database (Denmark)

    Pedersen, B.H.; Andersen, Niels Gerner

    1985-01-01

    Relatively complicated surgery is a necessity when implanting sensors internally in fish in order to measure physiological variables at specific locations. A surgical procedure from implanting transmitters with remote sensors into the body cavity of cod (Gadus morhua L.) is presented. The method...

  16. A robust method for compiling trawl survey data used in the assessment of central Baltic cod ( Gadus morhua L.)

    DEFF Research Database (Denmark)

    Sparholt, H.; Tomkiewicz, Jonna

    2000-01-01

    of adult cod of all ages aggregated to minimise the effects of age determination discrepancies. The established index of spawning stock biomass did not correlate significantly better with VPA estimates than simpler indices ignoring depth stratification and fishing power. However, the method is preferable...

  17. A surgical method for implanting transmitters with sensors into the body cavity of cod (Gadus morhua L.)

    DEFF Research Database (Denmark)

    Pedersen, B.H.; Andersen, Niels Gerner

    1985-01-01

    Relatively complicated surgery is a necessity when implanting sensors internally in fish in order to measure physiological variables at specific locations. A surgical procedure from implanting transmitters with remote sensors into the body cavity of cod (Gadus morhua L.) is presented. The method ...

  18. Human exposure to lead, cadmium and mercury through fish and seafood product consumption in Italy: a pilot evaluation.

    Science.gov (United States)

    Pastorelli, A A; Baldini, M; Stacchini, P; Baldini, G; Morelli, S; Sagratella, E; Zaza, S; Ciardullo, S

    2012-01-01

    The presence of selected toxic heavy metals, such as cadmium (Cd), lead (Pb) and mercury (Hg), was investigated in fish and seafood products, namely, blue mussel, carpet shell clam, European squid, veined squid, deep-water rose shrimp, red mullet, European seabass, gilthead seabream, Atlantic cod, European hake, Atlantic bluefin tuna and swordfish so as to assess their human exposure through diet. Metals were detected by quadrupole inductively coupled plasma mass spectrometry (Q-ICP-MS) and hydride generation atomic absorption spectrometry (Hg-AAS). Measurements of Cd, Pb and Hg were performed by means of analytical methods validated in compliance with UNI CEI EN ISO/IEC 17025 [2005. General requirements for the competence of testing and calibration laboratories. Milano (Italy): UNI Ente Nazionale Italiano di Unificazione]. The exposure assessment was undertaken matching the levels of Cd, Pb and total Hg with consumption data related to fish and seafood products selected for this purpose. In order to establish human health implications, the estimated weekly intakes (EWIs) for Cd, Pb and Hg were compared with the standard tolerable weekly intakes (TWI) for Cd and provisional tolerable weekly intakes (PTWIs) for Pb and Hg stipulated by the European Food Safety Authority (EFSA) and the Food and Agriculture Organization/World Health Organization (FAO/WHO) Joint Expert Committee on Food Additives (JECFA). The found metal concentrations were largely below the maximum levels (MLs) established at the European Union level with the exception of Cd. This metal exceeded the MLs in squid, red mullet, European hake and Atlantic cod. Squid and blue mussel showed the highest Pb concentrations which accounted for 60% and 10% of the MLs, respectively. Highest Hg levels were found in predatory fish. The concentrations of Hg in swordfish, Atlantic bluefin tuna and red mullet accounted for 50%, 30% and 30% of the MLs, respectively. The EWIs for Cd, Pb and Hg related to the consumption

  19. Assessing the Role of Environmental Factors on Baltic Cod Recruitment, a Complex Adaptive System Emergent Property

    Directory of Open Access Journals (Sweden)

    Dionysis Krekoukiotis

    2016-07-01

    Full Text Available For decades, fish recruitment has been a subject of intensive research with stock–recruitment models commonly used for recruitment prediction often only explaining a small fraction of the inter-annual recruitment variation. The use of environmental information to improve our ability to predict recruitment, could contribute considerably to fisheries management. However, the problem remains difficult because the mechanisms behind such complex relationships are often poorly understood; this in turn, makes it difficult to determine the forecast estimation robustness, leading to the failure of some relationships when new data become available. The utility of machine learning algorithms such as artificial neural networks (ANNs for solving complex problems has been demonstrated in aquatic studies and has led many researchers to advocate ANNs as an attractive, non-linear alternative to traditional statistical methods. The goal of this study is to design a Baltic cod recruitment model (FishANN that can account for complex ecosystem interactions. To this end, we (1 build a quantitative model representation of the conceptual understanding of the complex ecosystem interactions driving Baltic cod recruitment dynamics, and (2 apply the model to strengthen the current capability to project future changes in Baltic cod recruitment. FishANN is demonstrated to bring multiple stressors together into one model framework and estimate the relative importance of these stressors while interpreting the complex nonlinear interactions between them. Additional requirements to further improve the current study in the future are also proposed.

  20. Assessing the Impact of Policy Changes in the Icelandic Cod Fishery Using a Hybrid Simulation Model

    Directory of Open Access Journals (Sweden)

    Sigríður Sigurðardóttir

    2014-01-01

    Full Text Available Most of the Icelandic cod is caught in bottom trawlers or longliners. These two fishing methods are fundamentally different and have different economic, environmental, and even social effects. In this paper we present a hybrid-simulation framework to assess the impact of changing the ratio between cod quota allocated to vessels with longlines and vessels with bottom trawls. It makes use of conventional bioeconomic models and discrete event modelling and provides a framework for simulating life cycle assessment (LCA for a cod fishery. The model consists of two submodels, a system dynamics model describing the biological aspect of the fishery and a discrete event model for fishing activities. The model was run multiple times for different quota allocation scenarios and results are presented where different scenarios are presented in the three dimensions of sustainability: environmental, social, and economic. The optimal allocation strategy depends on weighing the three different factors. The results were encouraging first-steps towards a useful modelling method but the study would benefit greatly from better data on fishing activities.

  1. Assessing the impact of policy changes in the Icelandic cod fishery using a hybrid simulation model.

    Science.gov (United States)

    Sigurðardóttir, Sigríður; Johansson, Björn; Margeirsson, Sveinn; Viðarsson, Jónas R

    2014-01-01

    Most of the Icelandic cod is caught in bottom trawlers or longliners. These two fishing methods are fundamentally different and have different economic, environmental, and even social effects. In this paper we present a hybrid-simulation framework to assess the impact of changing the ratio between cod quota allocated to vessels with longlines and vessels with bottom trawls. It makes use of conventional bioeconomic models and discrete event modelling and provides a framework for simulating life cycle assessment (LCA) for a cod fishery. The model consists of two submodels, a system dynamics model describing the biological aspect of the fishery and a discrete event model for fishing activities. The model was run multiple times for different quota allocation scenarios and results are presented where different scenarios are presented in the three dimensions of sustainability: environmental, social, and economic. The optimal allocation strategy depends on weighing the three different factors. The results were encouraging first-steps towards a useful modelling method but the study would benefit greatly from better data on fishing activities.

  2. A modified method for COD determination of solid waste, using a commercial COD kit and an adapted disposable weighing support.

    Science.gov (United States)

    André, L; Pauss, A; Ribeiro, T

    2017-03-01

    The chemical oxygen demand (COD) is an essential parameter in waste management, particularly when monitoring wet anaerobic digestion processes. An adapted method to determine COD was developed for solid waste (total solids >15%). This method used commercial COD tubes and did not require sample dilution. A homemade plastic weighing support was used to transfer the solid sample into COD tubes. Potassium hydrogen phthalate and glucose used as standards showed an excellent repeatability. A small underestimation of the theoretical COD value (standard values around 5% lower than theoretical values) was also observed, mainly due to the intrinsic COD of the weighing support and to measurement uncertainties. The adapted COD method was tested using various solid wastes in the range of 1-8 mgCOD, determining the COD of dried and ground cellulose, cattle manure, straw and a mixed-substrate sample. This new adapted method could be used to monitor and design dry anaerobic digestion processes.

  3. Strong linkage of polar cod (Boreogadus saida) to sea ice algae-produced carbon: Evidence from stomach content, fatty acid and stable isotope analyses

    Science.gov (United States)

    Kohlbach, Doreen; Schaafsma, Fokje L.; Graeve, Martin; Lebreton, Benoit; Lange, Benjamin Allen; David, Carmen; Vortkamp, Martina; Flores, Hauke

    2017-03-01

    The polar cod (Boreogadus saida) is considered an ecological key species, because it reaches high stock biomasses and constitutes an important carbon source for seabirds and marine mammals in high-Arctic ecosystems. Young polar cod (1-2 years) are often associated with the underside of sea ice. To evaluate the impact of changing Arctic sea ice habitats on polar cod, we examined the diet composition and quantified the contribution of ice algae-produced carbon (αIce) to the carbon budget of polar cod. Young polar cod were sampled in the ice-water interface layer in the central Arctic Ocean during late summer 2012. Diets and carbon sources of these fish were examined using 4 approaches: (1) stomach content analysis, (2) fatty acid (FA) analysis, (3) bulk nitrogen and carbon stable isotope analysis (BSIA) and (4) compound-specific stable isotope analysis (CSIA) of FAs. The ice-associated (sympagic) amphipod Apherusa glacialis dominated the stomach contents by mass, indicating a high importance of sympagic fauna in young polar cod diets. The biomass of food measured in stomachs implied constant feeding at daily rates of ∼1.2% body mass per fish, indicating the potential for positive growth. FA profiles of polar cod indicated that diatoms were the primary carbon source, indirectly obtained via amphipods and copepods. The αIce using bulk isotope data from muscle was estimated to be >90%. In comparison, αIce based on CSIA ranged from 34 to 65%, with the highest estimates from muscle and the lowest from liver tissue. Overall, our results indicate a strong dependency of polar cod on ice-algae produced carbon. This suggests that young polar cod may be particularly vulnerable to changes in the distribution and structure of sea ice habitats. Due to the ecological key role of polar cod, changes at the base of the sea ice-associated food web are likely to affect the higher trophic levels of high-Arctic ecosystems.

  4. Purine-induced expression of urate oxidase and enzyme activity in Atlantic salmon (Salmo salar). Cloning of urate oxidase liver cDNA from three teleost species and the African lungfish Protopterus annectens.

    Science.gov (United States)

    Andersen, Øivind; Aas, Turid S; Skugor, Stanko; Takle, Harald; van Nes, Solveig; Grisdale-Helland, Barbara; Helland, Ståle J; Terjesen, Bendik F

    2006-07-01

    The peroxisomal enzyme urate oxidase plays a pivotal role in the degradation of purines in both prokaryotes and eukaryotes. However, knowledge about the purine-induced expression of the encoding gene is lacking in vertebrates. These are the first published sequences of fish urate oxidase, which were predicted from PCR amplified liver cDNAs of Atlantic salmon (Salmo salar), Atlantic cod (Gadus morhua), Atlantic halibut (Hippoglossus hippoglossus) and African lungfish (Protopterus annectens). Sequence alignment of different vertebrate urate oxidases revealed amino acid substitutions of putative functional importance in the enzyme of chicken and lungfish. In the adult salmon, expression of urate oxidase mRNA predominated in liver, but was also identified in several nonhepatic organs including brain, but not in skeletal muscle and kidney. Juvenile salmon fed diets containing bacterial protein meal (BPM) rich in nucleic acids showed a significant increase in liver urate oxidase enzyme activity, and urea concentrations in plasma, muscle and liver were elevated. Whereas salmon fed the 18% BPM diet showed a nonsignificant increase in liver mRNA levels of urate oxidase compared with the 0% BPM-fed fish, no further increase in mRNA levels was found in fish receiving 36% BPM. The discrepancy between urate oxidase mRNA and enzyme activity was explained by rapid mRNA degradation or alternatively, post-translational control of the activity. Although variable plasma and liver levels of urate were detected, the substrate increased only slightly in 36% BPM-fed fish, indicating that the uricolytic pathway of Atlantic salmon is intimately regulated to handle high dietary purine levels.

  5. 76 FR 31941 - Atlantic Coastal Fisheries Cooperative Management Act Provisions; Horseshoe Crabs; Application...

    Science.gov (United States)

    2011-06-02

    ... National Oceanic and Atmospheric Administration RIN 0648-XW53 Atlantic Coastal Fisheries Cooperative Management Act Provisions; Horseshoe Crabs; Application for Exempted Fishing Permit AGENCY: National Marine... otherwise restricted by the regulations promulgated under the Atlantic Coastal Fisheries...

  6. 75 FR 31421 - Atlantic Coastal Fisheries Cooperative Management Act Provisions; Application for Exempted...

    Science.gov (United States)

    2010-06-03

    ... National Oceanic and Atmospheric Administration RIN 0648-XW53 Atlantic Coastal Fisheries Cooperative Management Act Provisions; Application for Exempted Fishing Permit; Horseshoe Crabs AGENCY: National Marine... otherwise restricted by the regulations promulgated under the Atlantic Coastal Fisheries...

  7. Inventory of Atlantic White-Cedar Remnant Stands in North Carolina

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — This report addresses Atlantic white cedar swamp restoration in North Carolina refuges. The ecology, use, and historical distribution of Atlantic white-cedar (AWC)...

  8. Relationships between water mass characteristics and estimates of fish population abundance from trawl surveys.

    Science.gov (United States)

    Smith, S J; Perry, R I; Fanning, L P

    1991-01-01

    The Canadian Department of Fisheries and Oceans conducts annual bottom trawl surveys to monitor changes in the abundance of the major commercially important groundfish populations. Some of these surveys have been in operation for almost 20 yr. The estimates from these surveys often indicate rapid changes in abundance over time beyond that expected from the population dynamics of the fish. Much of this interannual change has been interpreted as variation, the magnitude of which has often made it difficult to measure anything but the most severe effects of fishing, pollution or any other intervention on the population. Recent studies have shown that some of this variation may be attributed to changes in catchability of fish due to the effects of environmental variables on fish distribution. Annual changes in abundance as estimated from such field surveys may be confounded by changes in catchability due to annual changes in environmental conditions. In this study, trawl catches of age 4 Atlantic cod (Gadus morhua) from surveys conducted during March 1979-1988 were compared with concurrent measurements of bottom salinity, temperature and depth. Large catches of age 4 cod are more likely to occur in water characterized as the intermediate cold layer defined by salinities of 32-33.5 and temperatures<5°C. This relationship also appears to be modified by depth. We further show that internnual changes in the estimated abundance from the surveys were, in a number of cases, coincident with changes in the proportion of the bottom water composed of the intermediate cold water layer. The implications that these patterns may have on interpreting trends in the estimates of abundance from trawl surveys are discussed.

  9. Hydrolysis of Fish Protein by Analkaline Protease

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Cod muscle protein was hydrolyzed by an alkaline protease in our study. The influences of hydrolysis temperature,fish protein concentration,and ratio of protease addition to protein amount on its degree of hy drolysis (DH) of protein were studied in details by applying dual quadratic rotary combinational design. The final results showed that more than 84% cod muscle protein could be hydrolyzed and recovered. Cod protein hydrolysate thus obtained had a balanced amino acid composition and mainly consisted of small peptides with molecule weight less than 6900 dalton.

  10. MOLECULAR IDENTIFICATION OF Pseudoterranova azarasi LARVAE IN COD (Gadus sp.) SOLD FOR HUMAN CONSUMPTION IN BRAZIL.

    Science.gov (United States)

    Marigo, Juliana; Taniwaki, Sueli Akemi; Pinto, Pedro Luiz Silva; Soares, Rodrigo Martins; Catão-Dias, José Luiz

    2015-12-01

    Anisakiasis and Pseudoterranovosis are human diseases caused by the ingestion of live Anisakidae larvae in raw, undercooked or lightly marinated fish. Larvae were collected from one salted cod sold for human consumption in a Sao Paulo market in 2013. One section of one brownish larva was used for molecular analyses. The partial COX2 gene sequence from the larva had a nucleotide identity of 99.8 % with Pseudoterranova azarasi, which belongs to the Pseudoterranova decipiens species complex. The risk of allergy when consuming dead larvae in salted fish is not well known and should be considered.

  11. Turtle cleaners: reef fishes foraging on epibionts of sea turtles in the tropical Southwestern Atlantic, with a summary of this association type

    Directory of Open Access Journals (Sweden)

    Cristina Sazima

    2010-03-01

    Full Text Available In the present study we record several instances of reef fish species foraging on epibionts of sea turtles (cleaning symbiosis at the oceanic islands of Fernando de Noronha Archipelago and near a shipwreck, both off the coast of Pernambuco State, northeast Brazil. Nine reef fish species and three turtle species involved in cleaning are herein recorded. Besides our records, a summary of the literature on this association type is presented. Postures adopted by turtles during the interaction are related to the habits of associated fishes. Feeding associations between fishes and turtles seem a localized, albeit common, phenomenon.No presente estudo registramos diversos episódios de peixes recifais alimentando-se de epibiontes sobre o corpo de tartarugas marinhas (simbiose de limpeza nas ilhas oceânicas do arquipélago de Fernando de Noronha e próximo a um naufrágio na costa de Pernambuco, nordeste do Brasil. Nove espécies de peixes recifais e três espécies de tartarugas envolvidas nas associações são aqui registradas. Além de nossos registros, apresentamos também um resumo da literatura sobre o tema. As posturas adotadas pelas tartarugas durante as interações estão relacionadas com os hábitos dos peixes associados. Associações alimentares entre peixes e tartarugas podem ser consideradas como um fenômeno local, embora comum.

  12. Biodiversity and species-environment relationships of the demersal fish assemblage at the Great Meteor Seamount (subtropical NE Atlantic), sampled by different trawls

    DEFF Research Database (Denmark)

    Fock, H.; Uiblein, F.; Köster, Fritz

    2002-01-01

    Quantitative data collected with different bottom trawls at the Great Meteor Scamount (subtropical NE Atlantic, 30degreesN; 28.5degreesW) in 1967, 1970 and 1998 are compared. Bootstrap estimates of total catch per unit effort increased from 6.96 and 10.8 ind. m(-1) h(-1) in 1967 and 1970, respect......Quantitative data collected with different bottom trawls at the Great Meteor Scamount (subtropical NE Atlantic, 30degreesN; 28.5degreesW) in 1967, 1970 and 1998 are compared. Bootstrap estimates of total catch per unit effort increased from 6.96 and 10.8 ind. m(-1) h(-1) in 1967 and 1970...... information, a grand total of 46 species was found associated with the Great Meteor Seamount. Diversity was higher in 1967 and 1970 (Shannon's diversity: H'=2.5 and 1.6) than in 1998 (H'=0.9). Species-environment relationships are discussed in terms of a sound-scattering layer-interception hypothesis, i...

  13. Combined application of modified atmosphere packaging and superchilled storage to extend the shelf life of fresh cod (Gadus morhua) loins.

    Science.gov (United States)

    Wang, T; Sveinsdóttir, K; Magnússon, H; Martinsdóttir, E

    2008-01-01

    Development of new technologies and preservation methods to offer conveniently packed fish with sufficient keeping quality is important to meet increasing demand for value-added fresh fish products on the market. The aim of this study was to investigate the effect of combined application of modified atmosphere packaging (MAP) and superchilled storage on the shelf life of fresh cod loins. Fresh cod loins were packed in polystyrene boxes and in MA (CO(2)/N(2)/O(2): 50%/45%/5%) on day 3 postcatch and stored at chilled (1.5 degrees C) and superchilled (-0.9 degrees C) temperatures. Quantitative descriptive analysis (QDA) and physical, chemical, and microbial analyses were carried out during the 21 d of storage. Superchilled storage alone compared with traditional chilled storage in polystyrene boxes increased the total shelf life (days from catch) of cod loins from 9 to 16 or 17 d. Chilled MA packaging increased the shelf life from 9 to 14 d and when MAP and superchilled storage were combined, a synergistic effect was observed and the shelf life was further extended to at least 21 d. It is noteworthy that the characteristic fresh and sweet taste can be maintained longer under such conditions. This could contribute to enhanced eating quality of fresh cod fillets for consumers in distant markets. However, MAP combined with superchilled storage resulted in different textural properties. Superchilled MA packed cod loins had more meaty texture compared to other sample groups after 7-d storage.

  14. Dehydrofreezing of Fish I

    Science.gov (United States)

    Kozima, Tsuneo

    Recently, new method of removing water from perishable food were developed using dehydration sheet with material having high osmotic pressure and absorbent polymer. Dehydration sheet consist of mixture of sugar dehydrolysate and absorbent polymer covered with sem-permeable membrane, and can remove water in liquid state by contact with perishable food. Dehydration rate of fish using with dehydration sheet varied depending on species, their shape, and ambient temperature etc. Fish were dehydrated with dehydration sheet at low temperature as 0 - 5 C and frozen in cold storage room. Dehydrofrozen fish were kept it's high quality and freshness after thawing, ATPase activity of fish muscle was kept at high level after dehydrofreezing in the case of cod and alaska pollack, and flesh color of farming salmon was kept after thawing.

  15. Redescription and phylogenetic position of Myxobolus aeglefini and Myxobolus platessae n. comb. (Myxosporea), parasites in the cartilage of some North Atlantic marine fishes, with notes on the phylogeny and classification of the Platysporina.

    Science.gov (United States)

    Karlsbakk, Egil; Kristmundsson, Árni; Albano, Marco; Brown, Paul; Freeman, Mark A

    2017-02-01

    Myxobolus 'aeglefini' Auerbach, 1906 was originally described from cranial cartilage of North sea haddock (Melanogrammus aeglefinus), but has subsequently been recorded from cartilaginous tissues of a range of other gadoid hosts, from pleuronectids and from lumpsucker (Cyclopterus lumpus) in the North Atlantic and from a zoarcid fish in the Japan Sea (Pacific). We obtained partial small-subunit rDNA sequences of Myxobolus 'aeglefini' from gadoids and pleuronectids from Norway and Iceland. The sequences from gadoids and pleuronectids represented two different genotypes, showing 98.2% identity. Morphometric studies on the spores from selected gadids and pleuronectids revealed slight but statistically significant differences in spore dimensions associated with the genotypes, the spores from pleuronectids were thicker and with larger polar capsules. We identify the morpho- and genotype from gadoids with Myxobolus 'aeglefini' sensu Auerbach, and the one from pleuronectids with Sphaerospora platessae Woodcock, 1904 as Myxobolus platessae n. comb. The latter species was originally described from Irish Sea plaice (Pleuronectes platessa). Myxobolus albi Picon et al., 2009 described from the common goby Pomatoschistus microps in Scotland is a synonym of M. 'aeglefini'. The Pacific Myxobolus 'aeglefini' represents a separate species, showing only 97.4-97.6% identity to the Atlantic species. In phylogenetic analyses based on SSU rDNA sequences, these and some related marine chondrotropic Myxobolus spp. form a distinct well supported group. This clusters with freshwater and marine myxobolids and Triangula and Cardimyxobolus species, in a basal clade in the phylogeny of the Platysporina. Members of family Myxobilatidae, Ortholinea spp. (currently Ortholineidae) and sequences of some other urinary system infecting myxosporeans form a well supported clade among members of the suborder Platysporina. Based on phylogenetic analyses, we propose the following changes to the

  16. Sediments of Cape Cod Bay, Massachusetts (HOUGH42 shapefile)

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Cape Cod Bay, lying on the Massachusetts coast partly enclosed by Cape Cod, is in a glaciated region of low relief. Coarse sediments generally occur in areas exposed...

  17. Environmental contaminants in tissues from an Atlantic sturgeon (Acipenser oxyrinchus) recovered in Wellfleet, Massachusetts

    Data.gov (United States)

    US Fish and Wildlife Service, Department of the Interior — On February 2, 2007, a family walking along a Cape Cod beach in Wellfleet, Massachusetts, came upon a large dead sturgeon in the sand. Since very little information...

  18. Environmental effects on recruitment and implications for biological reference points of Eastern Baltic cod (Gadus morhua)

    DEFF Research Database (Denmark)

    Köster, Fritz; Vinther, Morten; MacKenzie, Brian;

    2009-01-01

    stock productivity. Long-term projections suggest that under adverse environmental conditions for reproduction, harvesting at fishing mortality determined as precautionary may not lead to a recovery of the stock to a biomass level considered precautionary. Thus, a revision of either the limit fishing......The decline of the Eastern Baltic cod (Gadus morhua) stock from highest to lowest stock levels on record throughout the 1980s and early 1990s was caused by a combination of recruitment failure and increasing fishing pressure at declining stock sizes. The processes driving the reproductive success...... of limit reference points, but according to long-term simulations also for target fishing mortalities, being central parts of harvest control rules in several management plans....

  19. Trophic relationships, feeding habits and seasonal dietary changes in an intertidal rockpool fish assemblage in the Gulf of Cadiz (NE Atlantic)

    Science.gov (United States)

    Compaire, Jesus C.; Cabrera, Remedios; Gómez-Cama, Carmen; Soriguer, Milagrosa C.

    2016-06-01

    This paper describes the use of resources and diet of nine resident fish species in the rocky intertidal zone of the Gulf of Cadiz and examines whether their populations are affected by trophic competition. A stomach content analysis of the nine species revealed that only one was herbivorous (Parablennius sanguinolentus), while the rest were mainly carnivorous (Gobius bucchichi, Gobius cobitis, Gobius paganellus, Zebrus zebrus, Salaria pavo, Lepadogaster lepadogaster, Scorpaena porcus and Tripterygion tripteronotum). The most frequently consumed prey were amphipods, isopods, polychaetes, decapods, chironomids, tanaidaceans, gastropods, copepods, cumaceans and ostracods. In most species, the occurrence of polychaetes and molluscs was higher in the cold season, whereas that of isopods, decapods, chironomids and fish increased in the warm season. In general, larger specimens consumed larger prey, with an increase in the occurrence of isopods, decapods and fish. An analysis of trophic niche breadth defined G. cobitis as generalist, G. bucchichi as opportunist and S. porcus as specialist, whereas the values obtained for the other species did not indicate a clearly defined strategy. Low diet overlap values and the segregation observed in several analyses indicated an adequate distribution of resources.

  20. 78 FR 32612 - Collect on Delivery (COD)-Service Features

    Science.gov (United States)

    2013-05-31

    ... 111 Collect on Delivery (COD)--Service Features AGENCY: Postal Service\\TM\\. ACTION: Proposed rule... * * * * * 503 Extra Services * * * * * 13.0 Collect on Delivery (COD) * * * * * 13.2 Basic Information 13.2.1... collect on delivery (COD) service to mail an article for which the mailer has not been paid and have...