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Sample records for fibers gossypium hirsutum

  1. An integrative analysis of four CESA isoforms specific for fiber cellulose production between Gossypium hirsutum and Gossypium barbadense.

    Science.gov (United States)

    Li, Ao; Xia, Tao; Xu, Wen; Chen, Tingting; Li, Xianliang; Fan, Jian; Wang, Ruyi; Feng, Shengqiu; Wang, Yanting; Wang, Bingrui; Peng, Liangcai

    2013-06-01

    Cotton fiber is an excellent model system of cellulose biosynthesis; however, it has not been widely studied due to the lack of information about the cellulose synthase (CESA) family of genes in cotton. In this study, we initially identified six full-length CESA genes designated as GhCESA5-GhCESA10. Phylogenetic analysis and gene co-expression profiling revealed that CESA1, CESA2, CESA7, and CESA8 were the major isoforms for secondary cell wall biosynthesis, whereas CESA3, CESA5, CESA6, CESA9, and CESA10 should involve in primary cell wall formation for cotton fiber initiation and elongation. Using integrative analysis of gene expression patterns, CESA protein levels, and cellulose biosynthesis in vivo, we detected that CESA8 could play an enhancing role for rapid and massive cellulose accumulation in Gossypium hirsutum and Gossypium barbadense. We found that CESA2 displayed a major expression in non-fiber tissues and that CESA1, a housekeeping gene like, was predominantly expressed in all tissues. Further, a dynamic alteration was observed in cell wall composition and a significant discrepancy was observed between the cotton species during fiber elongation, suggesting that pectin accumulation and xyloglucan reduction might contribute to cell wall transition. In addition, we discussed that callose synthesis might be regulated in vivo for massive cellulose production during active secondary cell wall biosynthesis in cotton fibers.

  2. Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum fiber transcriptome.

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    Mi-Jeong Yoo

    2014-01-01

    Full Text Available The single-celled cotton (Gossypium hirsutum fiber provides an excellent model to investigate how human selection affects phenotypic evolution. To gain insight into the evolutionary genomics of cotton domestication, we conducted comparative transcriptome profiling of developing cotton fibers using RNA-Seq. Analysis of single-celled fiber transcriptomes from four wild and five domesticated accessions from two developmental time points revealed that at least one-third and likely one-half of the genes in the genome are expressed at any one stage during cotton fiber development. Among these, ~5,000 genes are differentially expressed during primary and secondary cell wall synthesis between wild and domesticated cottons, with a biased distribution among chromosomes. Transcriptome data implicate a number of biological processes affected by human selection, and suggest that the domestication process has prolonged the duration of fiber elongation in modern cultivated forms. Functional analysis suggested that wild cottons allocate greater resources to stress response pathways, while domestication led to reprogrammed resource allocation toward increased fiber growth, possibly through modulating stress-response networks. This first global transcriptomic analysis using multiple accessions of wild and domesticated cottons is an important step toward a more comprehensive systems perspective on cotton fiber evolution. The understanding that human selection over the past 5,000+ years has dramatically re-wired the cotton fiber transcriptome sets the stage for a deeper understanding of the genetic architecture underlying cotton fiber synthesis and phenotypic evolution.

  3. Structural analysis of Gossypium hirsutum fibers grown under greenhouse and hydroponic conditions.

    Science.gov (United States)

    Natalio, Filipe; Tahir, Muhammad Nawaz; Friedrich, Norman; Köck, Margret; Fritz-Popovski, Gerhard; Paris, Oskar; Paschke, Reinhard

    2016-06-01

    Cotton is the one of the world's most important crops. Like any other crop, cotton growth/development and fiber quality is highly dependent on environmental factors. Increasing global weather instability has been negatively impacting its economy. Cotton is a crop that exerts an intensive pressure over natural resources (land and water) and demands an overuse of pesticides. Thus, the search for alternative cotton culture methods that are pesticide-free (biocotton) and enable customized standard fiber quality should be encouraged. Here we describe a culture of Gossypium hirsutum ("Upland" Cotton) utilizing a greenhouse and hydroponics in which the fibers are morphological similar to conventional cultures and structurally fit into the classical two-phase cellulose I model with 4.19nm crystalline domains surrounded by amorphous regions. These fibers exhibit a single crystalline form of cellulose I-Iß, monoclinic unit cell. Fiber quality bulk analysis shows an improved length, strength, whiteness when compared with soil-based cultures. Finally, we show that our fibers can be spun, used for production of non-woven fabrics and indigo-vat stained demonstrating its potential in industrial and commercial applications.

  4. Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

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    Cotton is the world’s most important natural textile fibre and a significant oilseed crop. Upland cotton (Gossypium hirsutum L.), an allotetraploid derived from A- and D-genome progenitors, accounts for >95% of world production. Here, we sequenced and assembled 88% of the 2.5-gigabase genome of the ...

  5. The cytogenetics and fiber properties of an allohexaploid between Gossypium hirsutum and G. somalense

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Cytogenetics and fiber properties were studied on the Gossypium hirsutum×G. somalense F2 hybrid and later generations. The cytological analyses of pollen mother cells (PMCs) were made at meiotic metaphase Ⅰ. The results indicated that the hybrid was a new allohexaploid, its chro-mosome number determined as 2n=6x=78, and genome group as 2[(AD)1E2]. Chromosomal configurations of the hexaploid averaged 0.15Ⅰ+ 38.72Ⅱ+ 0.11Ⅲ + 0.02Ⅳ per cell, 85.09% PMCs having 39 bivalents, and only 11.84% PMCs having 1 to 2 multivalents, indicating that heteroge-netic recombinations of chromosomes occurs between (AD)1 and E2, nevertheless, the frequency is lower. The hexaploids are self-fertile and the progenies remain the hexaploids, whose fibers are light brown and have higher strength by measurement of HVI 900 system. The fiber strength in-creases 42% than that of upland cotton variety. Therefore, it is possible for the hexaploid to be an important germplasm resource to improve fiber strength of cotton.

  6. QTL Analysis of Fiber Yield and Quality and Resistance to Verticillium Wilt Using Gossypium hirsutum and G.barbadense Advanced Backcross Populations

    Institute of Scientific and Technical Information of China (English)

    LI Ai-guo; WANG Tao; YUAN You-lu; LIU Guang-ping; ZHANG Bao-cai; LI Jun-wen; SHI Yu-zhen; LIU Ai-ying; YANG Ze-mao; LIU Zhi; YU Xiao-nan

    2008-01-01

    @@ To introgress elite QTL alleles of Gossypium barbadense L.for fiber yield and quality and resistance to Verticillium wilt into G.hirsutum L.,enlarge the genetic base of G.hirsutum,and provide new germplasm resources for the variety development,the cultivars Zhongmiansuo 36,G.hirsutum,and Hai 1,G.barbadense,were used as recurrent and donor parent,respectively,to produce BC1 F1,BC1S1,and BC2F1 populations.QTL analyses of fiber quality,yield-related,Key words: interspecific backcrosss; AB-QTL; fiber quality; yield; Verticillium wilt resistance

  7. The GhTT2_A07 gene is linked to the brown color and natural flame retardancy phenotypes of Lc1 cotton (Gossypium hirsutum L.) fibers

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    Some naturally-colored brown cotton fibers from accessions of Gossypium hirsutum L. can be used to make textiles with enhanced flame retardancy (FR). Several independent brown fiber loci have been identified and mapped to chromosomes, but the underlying genes have not yet been identified, and the me...

  8. Association analysis of fiber quality traits and exploration of elite alleles in Upland cotton cultivars/accessions (Gossypium hirsutum L.).

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    Cai, Caiping; Ye, Wenxue; Zhang, Tianzhen; Guo, Wangzhen

    2014-01-01

    Exploring the elite alleles and germplasm accessions related to fiber quality traits will accelerate the breeding of cotton for fiber quality improvement. In this study, 99 Gossypium hirsutum L. accessions with diverse origins were used to perform association analysis of fiber quality traits using 97 polymorphic microsatellite marker primer pairs. A total of 107 significant marker-trait associations were detected for three fiber quality traits under three different environments, with 70 detected in two or three environments and 37 detected in only one environment. Among the 70 significant marker-trait associations, 52.86% were reported previously, implying that these are stable loci for target traits. Furthermore, we detected a large number of elite alleles associated simultaneously with two or three traits. These elite alleles were mainly from accessions collected in China, introduced to China from the United States, or rare alleles with a frequency of less than 5%. No one cultivar contained more than half of the elite alleles, but 10 accessions were collected from China and the two introduced from the United States did contain more than half of these alleles. Therefore, there is great potential for mining elite alleles from germplasm accessions for use in fiber quality improvement in modern cotton breeding.

  9. Molecular markers associated with the immature fiber (im) gene affecting the degree of fiber cell wall thickening in cotton (Gossypium hirsutum L.).

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    Kim, Hee Jin; Moon, Hong S; Delhom, Christopher D; Zeng, Linghe; Fang, David D

    2013-01-01

    Cotton fiber fineness and maturity measured indirectly as micronaire (MIC) are important properties of determining fiber grades in the textile market. To understand the genetic control and molecular mechanisms of fiber fineness and maturity, we studied two near isogenic lines, Gossypium hirsutum, Texas Marker-1 wild type (TM-1) and immature fiber (im) mutant showing a significant difference in MIC values. The fibers from im mutant plants were finer and less mature with lower MIC values than those from the recurrent parent, TM-1. A comprehensive fiber property analysis of TM-1 and im mutant showed that the lower MIC of fibers in im mutant was due to the lower degree of fiber cell wall thickening as compared to the TM-1 fibers. Using an F(2) population comprising 366 progenies derived from a cross between TM-1 and im mutant, we confirmed that the immature fiber phenotype present in a mutant plant was controlled by one single recessive gene im. Furthermore, we identified 13 simple sequence repeat markers that were closely linked to the im gene located on chromosome 3. Molecular markers associated with the im gene will lay the foundation to further investigate genetic information required for improving cotton fiber fineness and maturity.

  10. Genomic Differentiation Between Gossypium barbadense and G.hirsutum

    Institute of Scientific and Technical Information of China (English)

    ZHANG Tian-zhen

    2008-01-01

    @@ Sea Island cotton (Gossypium barbadense L.) has superior fiber quality properties,while Uplandcotton (G.hirsutum L.) is characterized by its high yield.Although these two species are easilycrossed,it is difficult to integrate their superior genes.It will be very helpful to molecular breedingand evolution study in Gossypium to reveal genomic differentiation between G.barbadense and G.hir-suture.An enhanced genetic map consisting of 2247 loci and covering 3514.6 cM,with an average in-ter-marker distance of 1.5 cM has been developed.

  11. MicroRNA expression profiles during cotton (Gossypium hirsutum L) fiber early development

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    Wang, Min; Sun, Runrun; Li, Chao; Wang, Qinglian; Zhang, Baohong

    2017-01-01

    The role of microRNAs (miRNAs) during cotton fiber development remains unclear. Here, a total of 54 miRNAs belonging to 39 families were selected to characterize miRNA regulatory mechanism in eight different fiber development stages in upland cotton cv BM-1. Among 54 miRNAs, 18 miRNAs were involved in cotton fiber initiation and eight miRNAs were related to fiber elongation and secondary wall biosynthesis. Additionally, 3,576 protein-coding genes were candidate target genes of these miRNAs, which are potentially involved in cotton fiber development. We also investigated the regulatory network of miRNAs and corresponding targets in fiber initiation and elongation, and secondary wall formation. Our Gene Ontology-based term classification and KEGG-based pathway enrichment analyses showed that the miRNA targets covered 220 biological processes, 67 molecular functions, 45 cellular components, and 10 KEGG pathways. Three of ten KEGG pathways were involved in lignan synthesis, cell elongation, and fatty acid biosynthesis, all of which have important roles in fiber development. Overall, our study shows the potential regulatory roles of miRNAs in cotton fiber development and the importance of miRNAs in regulating different cell types. This is helpful to design miRNA-based biotechnology for improving fiber quality and yield. PMID:28327647

  12. Modeling Fiber Fineness, Maturity, and Micronaire in Cotton (Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    ZHAO Wen-qing; ZHOU Zhi-guo; MENG Ya-li; CHEN Bing-lin; WANG You-hua

    2013-01-01

    Crop performance is determined by the combined effects of the genotype of the crop and the environmental conditions of the production system. This study was undertaken to develop a dynamic model for simulating environmental (temperature and solar radiation) and N supply effects on fiber fineness, maturity and micronaire. Three different experiments involving genotypes, sowing dates, and N fertilization rates were conducted to support model development and model evaluation. The growth and development duration of fiber fineness, maturity, and micronaire were scaled by using physiological development time of secondary wall synthesis (PDTSWSP), which was determined based on the constant ratio of SWSP/BMP. PTP (product of relative thermal effectiveness (RTE) and photosynthetically active radiation (PAR), MJ m-2) and subtending leaf N content per unit area (NA, g m-2) and critical subtending leaf N content per unit area (CNA, g m-2) of cotton boll were calculated or simulated to evaluate effects of temperature and radiation, and N supply. Besides, the interactions among temperature, radiation and N supply were also explained by piecewise function. The overall performance of the model was calibrated and validated with independent data sets from three field experiments with two sowing dates, three or five flowering dates and three or four N fertilization rates for three subsequent years (2005, 2007, and 2009) at three ecological locations. The average RMSE and RE for fiber fineness, maturity, and micronaire predictions were 372 m g-1 and 5.0%, 0.11 m g-1 and 11.4%, 0.3 m g-1 and 12.3%, respectively, indicating a good fit between the simulated and observed data. It appears that the model can give a reliable prediction for fiber fineness, maturity and micronaire formation under various growing conditions.

  13. The Immature Fiber Mutant Phenotype of Cotton (Gossypium hirsutum Is Linked to a 22-bp Frame-Shift Deletion in a Mitochondria Targeted Pentatricopeptide Repeat Gene

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    Gregory N. Thyssen

    2016-06-01

    Full Text Available Cotton seed trichomes are the most important source of natural fibers globally. The major fiber thickness properties influence the price of the raw material, and the quality of the finished product. The recessive immature fiber (im gene reduces the degree of fiber cell wall thickening by a process that was previously shown to involve mitochondrial function in allotetraploid Gossypium hirsutum. Here, we present the fine genetic mapping of the im locus, gene expression analysis of annotated proteins near the locus, and association analysis of the linked markers. Mapping-by-sequencing identified a 22-bp deletion in a pentatricopeptide repeat (PPR gene that is completely linked to the immature fiber phenotype in 2837 F2 plants, and is absent from all 163 cultivated varieties tested, although other closely linked marker polymorphisms are prevalent in the diversity panel. This frame-shift mutation results in a transcript with two long open reading frames: one containing the N-terminal transit peptide that targets mitochondria, the other containing only the RNA-binding PPR domains, suggesting that a functional PPR protein cannot be targeted to mitochondria in the im mutant. Taken together, these results suggest that PPR gene Gh_A03G0489 is involved in the cotton fiber wall thickening process, and is a promising candidate gene at the im locus. Our findings expand our understanding of the molecular mechanisms that modulate cotton fiber fineness and maturity, and may facilitate the development of cotton varieties with superior fiber attributes.

  14. Effects of several Plant Growth Regulators on the Yield and Fiber Quality of Cotton (Gossypium hirsutum L.

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    Osman ÇOPUR

    2010-12-01

    Full Text Available Plant growth regulators (PGR are used in cotton (Gossypium hirsutum L. production to balance vegetative and reproductive growth, as well as to increase seed cotton yield and lint quality. Field experiments were conducted with some PGRs to determine their effects on yield and yield components of cotton cultivar Stoneville 453. The study was conducted in 2004 and 2005 at the Agricultural Research and Application Centre of Harran University located in Şanlıurfa, Turkey. During the study, seven commercial PGRs (MC, NAP, BIGIB, KH, MCROP and BIGIBER were sprayed at recommended doses and appropriate application periods. Experiments were arranged as randomized complete block design with three replications. Experimental plots consisted of six rows, each having 12 m length, row spacing was 0.70 and intra-row spacing was 0.20 m. The results showed that PGRs (except PC had statistically significant positive effects on the seed cotton yield, plant height, number of open boll, number of sympodia, boll weight, lint percentage and seed index and that they decreased the earliness index. However, fibre length, fibre fineness, fibre strength and fibre uniformity were not affected by the applications. Higher yields were obtained in MCROP, BIGIB and BIGIBER treated plots. Therefore, PGRs might be considered a component of cotton growth management, which is effective on providing higher seed cotton yields.

  15. Response of the enzymes to nitrogen applications in cotton fiber (Gossypium hirsutum L.) and their relationships with fiber strength

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    To investigate the response of key enzymes to nitrogen (N) rates in cotton fiber and its relationship with fiber strength, experiments were conducted in 2005 and 2006 with cotton cultivars in Nanjing. Three N rates 0, 240 and 480 kgN/hm2, signifying optimum and excessive nitrogen application levels were applied.The activities and the gene expressions of the key enzymes were affected by N, and the characteristics of cellulose accumulation and fiber strength changed as the N rate varied. Beta-1,3-glucanase activity in cotton fiber declined from 9 DPA till boll opening, and the beta-1, 3-glucanase coding gene expression also followed a unimodal curve in 12—24 DPA. In 240 kgN/hm2 condition, the characteristics of enzyme activity and gene expression manner for sucrose synthase and beta-1,3-glucanase in developing cotton fiber were more favorable for forming a longer and more steady cellulose accumulation process, and for high strength fiber development.

  16. Identification and Analyses of miRNA Genes in Allotetraploid Gossypium hirsutum Fiber Cells Based on the Sequenced Diploid G.raimondii Genome

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    Qin Li; Xiang Jin; Yu-Xian Zhu

    2012-01-01

    The plant genome possesses a large number of microRNAs (miRNAs) mainly 21-24 nucleotides in length.They play a vital role in regulation of target gene expression at various stages throughout the whole plant life cycle.Here we sequenced and analyzed ~ 10 million non-coding RNAs (ncRNAs) derived from fiber tissue of the allotetraploid cotton (Gossypium hirsutum) 7 days post-anthesis using ncRNA-seq technology.In terms of distinct reads,24 nt ncRNA is by far the dominant species,followed by 21 nt and 23 nt ncRNAs.Using ab initio prediction,we identified and characterized a total of 562 candidate miRNA gene loci on the recently assembled D5 genome of the diploid cotton G.raimondii.Of all the 562 predicted miRNAs,22 were previously discovered in cotton species and 187 had sequence conservation and homology to homologous miRNAs of other plant species.Nucleotide bias analysis showed that the 9th and 1st positions were significantly conserved among different types of miRNA genes.Among the 463 putative miRNA target genes,most significant up/down-regulation occurred in 10-20 days post-anthesis,indicating that miRNAs played an important role during the elongation and secondary cell wall synthesis stages of cotton fiber developmem.The discovery of new miRNA genes will help understand the mechanisms of miRNA generation and regulation in cotton.

  17. Sequencing of the Cultivated Tetraploid CottonGenome-Gossypium hirsutum

    Institute of Scientific and Technical Information of China (English)

    YU Shu-xun; WANG Kun-bo; LI Fu-guang; KOHEL Russell J; PERCY Richard G; YU John Z

    2008-01-01

    @@ Cotton is an important cash crop in the world,and it plays an irreplaceable role in China's nationaleconomy.Cultivated upland cotton (Gossypium hirsutum L.) represents 95% of the world's cottonproduction,but it has a complex allotetraploid genome that contains at least 30000 genes in 2500 MbDNA.

  18. Molecular confirmation of Gossypium hirsutum chromosome substitution lines

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    The primary gene pool for tetraploid cotton species includes G. hirsutum L., as well as the other four 2n=52 species of Gossypium (G. barbadense, G. mustellinum, G. tomentosum and G. darwinii). To help overcome barriers to effective introgression, we have developed a number of alien chromosome subst...

  19. Sequencing of the Cultivated Tetraploid Cotton Genome-Gossypium hirsutum

    Institute of Scientific and Technical Information of China (English)

    KOHEL; Russell; J; PERCY; Richard; G; YU; John; Z

    2008-01-01

    Cotton is an important cash crop in the world,and it plays an irreplaceable role in China's national economy.Cultivated upland cotton(Gossypium hirsutum L.) represents 95% of the world's cotton production,but it has a complex allotetraploid genome that contains at least 30000 genes in 2500 Mb

  20. Rapid plant regeneration from cotton(Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A simple and rapid regeneration method of cotton (Gossypium hirsutum L.cv.Xinluzao 4) is described.The proper use of phytohormone KT and IBA validly promoted the survival rate of test-tube plants and shortened the period of culture in combination with the techniques of micro-propagation and graft.

  1. Ameliorative effects of potassium nutrition on yield and fiber quality characteristics of cotton (Gossypium hirsutum L. under NaCl stress

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    Muhammad Ashraf

    2017-05-01

    Full Text Available Cotton (Gossypium hirsutum L. being moderately tolerant to salinity has been extensively grown in arid and semiarid regions where soil salinization is a major threat to plant growth and soil productivity. Excess salts in the growth medium may interfere with growth processes of cotton, leading to a severe decline in yield and fiber quality characteristics. Adequate mineral nutrient status of plants can provide an important strategy to improve plant tolerance to salinity. A pot experiment was planned to evaluate the ameliorative effects of additional potassium (K applied at 50 and 100 mg K2O kg-1 soil as potassium sulfate against NaCl stress of 100 and 180 mM in cotton. The experiment was conducted according to completely randomized design with five replications. NaCl caused a significant (P ≤ 0.05 increase in shoot sodium (Na+ and chloride (Cl- with a corresponding decrease in shoot K+, K+: Na+ ratio, calcium (Ca2+ and magnesium (Mg2+. Plant growth, yield and fiber quality characteristics were also declined significantly by increasing external NaCl concentration. Additional K reduced shoot Na + while increased K+, K+: Na+ ratio, Ca2+ and Mg2+ with the consequent improvement in plant growth, lint yield and yield attributes as well as fiber quality characteristics at both levels of NaCl. Results revealed that K nutrition improved shoot K+: Na+ ratio by 116 and 246% at NaCl100 while 188 and 294% at NaCl180 with K50 and K100, respectively as compared to NaCl treated plants without additional K. Likewise, lint yield was improved by 38.27 and 60.49% at NaCl100 while 75.12 and 136% at NaCl180 with K50 and K100, respectively compared to NaCl stressed plants without additional K. Ameliorative effects of K against NaCl stress were relatively more prominent at higher K application at both NaCl levels. In conclusion, K-induced decrease in Na+, increase in Ca2+, K+, K+: Na+ ratio, relative water content and membrane stability index provide protective

  2. Mapping of QTL for Fiber Length Using Interspecific Gossypium hirsutum × G.barbadense F2 Population

    Institute of Scientific and Technical Information of China (English)

    PREETHA S; RAVEENDRAN T S

    2008-01-01

    @@ Cotton occupies a pre-eminent place among cash crops as it guides the destiny of a large section of the farming community as well as that of a flourishing textile industry.As the yarn manufacturing industry has undergone a technological revolution,more emphasis is given to quality of the raw material in order to overcome high speed spinning.Though different yarn manufacturing technologies have various requirements in terms of basic fiber properties,fiber length has a premier role in deciding the spinning efficiency.

  3. Global Annotation of Small RNA and MicroRNA Mature Sequences from Developing Ovules of Gossypium hirsutum L.

    Institute of Scientific and Technical Information of China (English)

    ABDURAKHMONOV Ibrokhim Y; DEVOR Eric J; HUANG Ling-yan; BURIEV Zabardast T; MAKAMOV Abdusalom; SHERMATOV Shukhrat E; ABDUKARIMOV Abdusattor

    2008-01-01

    @@ The involvement of small RNAs in cotton fiber development is under explored.The objective of this work was to directly clone,annotate,and analyze small RNAs of developing ovules to reveal the candidate small interfering RNA/microRNAs (siRNAs/miRNAs) involved in cotton ovule and fiber development.We cloned small RNA sequences from 0~10 days post anthesis (DPA) developing ovules of Gossypium hirsutum var.

  4. The Complete Mitochondrial Genome of Gossypium hirsutum and Evolutionary Analysis of Higher Plant Mitochondrial Genomes

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    Su, Aiguo; Geng, Jianing; Grover, Corrinne E.; Hu, Songnian; Hua, Jinping

    2013-01-01

    Background Mitochondria are the main manufacturers of cellular ATP in eukaryotes. The plant mitochondrial genome contains large number of foreign DNA and repeated sequences undergone frequently intramolecular recombination. Upland Cotton (Gossypium hirsutum L.) is one of the main natural fiber crops and also an important oil-producing plant in the world. Sequencing of the cotton mitochondrial (mt) genome could be helpful for the evolution research of plant mt genomes. Methodology/Principal Findings We utilized 454 technology for sequencing and combined with Fosmid library of the Gossypium hirsutum mt genome screening and positive clones sequencing and conducted a series of evolutionary analysis on Cycas taitungensis and 24 angiosperms mt genomes. After data assembling and contigs joining, the complete mitochondrial genome sequence of G. hirsutum was obtained. The completed G.hirsutum mt genome is 621,884 bp in length, and contained 68 genes, including 35 protein genes, four rRNA genes and 29 tRNA genes. Five gene clusters are found conserved in all plant mt genomes; one and four clusters are specifically conserved in monocots and dicots, respectively. Homologous sequences are distributed along the plant mt genomes and species closely related share the most homologous sequences. For species that have both mt and chloroplast genome sequences available, we checked the location of cp-like migration and found several fragments closely linked with mitochondrial genes. Conclusion The G. hirsutum mt genome possesses most of the common characters of higher plant mt genomes. The existence of syntenic gene clusters, as well as the conservation of some intergenic sequences and genic content among the plant mt genomes suggest that evolution of mt genomes is consistent with plant taxonomy but independent among different species. PMID:23940520

  5. The complete mitochondrial genome of Gossypium hirsutum and evolutionary analysis of higher plant mitochondrial genomes.

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    Guozheng Liu

    Full Text Available BACKGROUND: Mitochondria are the main manufacturers of cellular ATP in eukaryotes. The plant mitochondrial genome contains large number of foreign DNA and repeated sequences undergone frequently intramolecular recombination. Upland Cotton (Gossypium hirsutum L. is one of the main natural fiber crops and also an important oil-producing plant in the world. Sequencing of the cotton mitochondrial (mt genome could be helpful for the evolution research of plant mt genomes. METHODOLOGY/PRINCIPAL FINDINGS: We utilized 454 technology for sequencing and combined with Fosmid library of the Gossypium hirsutum mt genome screening and positive clones sequencing and conducted a series of evolutionary analysis on Cycas taitungensis and 24 angiosperms mt genomes. After data assembling and contigs joining, the complete mitochondrial genome sequence of G. hirsutum was obtained. The completed G.hirsutum mt genome is 621,884 bp in length, and contained 68 genes, including 35 protein genes, four rRNA genes and 29 tRNA genes. Five gene clusters are found conserved in all plant mt genomes; one and four clusters are specifically conserved in monocots and dicots, respectively. Homologous sequences are distributed along the plant mt genomes and species closely related share the most homologous sequences. For species that have both mt and chloroplast genome sequences available, we checked the location of cp-like migration and found several fragments closely linked with mitochondrial genes. CONCLUSION: The G. hirsutum mt genome possesses most of the common characters of higher plant mt genomes. The existence of syntenic gene clusters, as well as the conservation of some intergenic sequences and genic content among the plant mt genomes suggest that evolution of mt genomes is consistent with plant taxonomy but independent among different species.

  6. Constructing a high-density linkage map for Gossypium hirsutum ? Gossypium barbadense and identifying QTLs for lint percentage

    Institute of Scientific and Technical Information of China (English)

    Yuzhen Shi; Haihong Shang; Juwu Gong; Wankui Gong; Zemao Yang; Feiy Tang; Zhi Liu; Weiping Zhu; Jianxiong Jiang; Xiaonan Yu; Tao Wang; Wentan Li; Wei Wang; Tingting Chen; Kunbo Wang; Zhengsheng Zhang; Youlu Yuan; Aiguo Li; Ruihua Ge; Baocai Zhang; Junzhi Li; Guangping Liu; Junwen Li; Aiying Liu

    2015-01-01

    To introgress the good fiber quality and yield from Gossypium barbadense into a commercial Upland cotton variety, a high‐density simple sequence repeat (SSR) genetic linkage map was developed from a BC1F1 population of Gossypium hirsutum ? Gossypium barbadense. The map com-prised 2,292 loci and covered 5115.16 centiMorgan (cM) of the cotton AD genome, with an average marker interval of 2.23 cM. Of the marker order for 1,577 common loci on this new map, 90.36% agrees well with the marker order on the D genome sequence genetic map. Compared with five pub-lished high‐density SSR genetic maps, 53.14% of marker loci were newly discovered in this map. Twenty‐six quantitative trait loci (QTLs) for lint percentage (LP) were identified on nine chromosomes. Nine stable or common QTLs could be used for marker‐assisted selection. Fifty percent of the QTLs were from G. barbadense and increased LP by 1.07%–2.41%. These results indicated that the map could be used for screening chromosome substitution segments from G. barbadense in the Upland cotton background, identifying QTLs or genes from G. barbadense, and further developing the gene pyramiding effect for improving fiber yield and quality.

  7. Fingerprinting Analysis of the Introgressed lines from Gossypium hirsutum L.× G.barbadense L.based on AFLP markers

    Institute of Scientific and Technical Information of China (English)

    LIU Zhao-hui; ZHANG Yong; DONG Shun-wen; WANG Jun

    2008-01-01

    @@ The main cultivated varieties in the world belong to the species of upland cotton (Gossypium hirsutum L.),and their genetic background is very narrow.However,the wild species and races in the genus of Gossypium have abundant genetic diversity and possess lots of excellent genes with potential high yield,fine and strong fiber,disease and insect resistance,drought and coldness resistance,male sterility,and so on.

  8. Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

    Science.gov (United States)

    Background: Individual fiber strength is an important quality attribute that greatly influences the strength of the yarn spun from cotton fibers. Fiber strength is usually measured from bundles of fibers due to the difficulty of reliably measuring strength from individual cotton fibers. However, bun...

  9. Isolation and characterization of terpene synthases in cotton (Gossypium hirsutum).

    Science.gov (United States)

    Yang, Chang-Qing; Wu, Xiu-Ming; Ruan, Ju-Xin; Hu, Wen-Li; Mao, Yin-Bo; Chen, Xiao-Ya; Wang, Ling-Jian

    2013-12-01

    Cotton plants accumulate gossypol and related sesquiterpene aldehydes, which function as phytoalexins against pathogens and feeding deterrents to herbivorous insects. However, to date little is known about the biosynthesis of volatile terpenes in this crop. Herein is reported that 5 monoterpenes and 11 sesquiterpenes from extracts of a glanded cotton cultivar, Gossypium hirsutum cv. CCRI12, were detected by gas chromatography-mass spectrometry (GC-MS). By EST data mining combined with Rapid Amplification of cDNA Ends (RACE), full-length cDNAs of three terpene synthases (TPSs), GhTPS1, GhTPS2 and GhTPS3 were isolated. By in vitro assays of the recombinant proteins, it was found that GhTPS1 and GhTPS2 are sesquiterpene synthases: the former converted farnesyl pyrophosphate (FPP) into β-caryophyllene and α-humulene in a ratio of 2:1, whereas the latter produced several sesquiterpenes with guaia-1(10),11-diene as the major product. By contrast, GhTPS3 is a monoterpene synthase, which produced α-pinene, β-pinene, β-phellandrene and trace amounts of other monoterpenes from geranyl pyrophosphate (GPP). The TPS activities were also supported by Virus Induced Gene Silencing (VIGS) in the cotton plant. GhTPS1 and GhTPS3 were highly expressed in the cotton plant overall, whereas GhTPS2 was expressed only in leaves. When stimulated by mechanical wounding, Verticillium dahliae (Vde) elicitor or methyl jasmonate (MeJA), production of terpenes and expression of the corresponding synthase genes were induced. These data demonstrate that the three genes account for the biosynthesis of volatile terpenes of cotton, at least of this Upland cotton.

  10. A comparative analysis of a fuzzless-lintless mutant of Gossypium hirsutum L. cv. Xu-142

    Institute of Scientific and Technical Information of China (English)

    于晓红; 朱勇清; 卢山; 张天真; 陈晓亚; 许智宏

    2000-01-01

    A fuzzless-lintless (fl) seed mutant of Gossypium hirsutum L. cv. Xu-142 was investigated to study cotton fiber development. Scanning electron microscopy revealed that fiber initials were virtually absent from fl ovules. RT-PCR analysis showed that the steady-state levels of transcripts of the fiber-specific E6 and Expansin genes were high in wild type (WT) ovules during the fiber initiation and elongation stages, and peaked around 15 days post anthesis (DPA), but only a trace amount of these transcripts was detectable in fl ovules of alt developmental stages investigated. CotmybA, a member of the Myb family, exhibited a clear expression in developing WT ovules, but the expression was abnormal in fl ovules. Application of GA3, or GA3 plus IAA, to the culture medium rescued in vitro fiber initiation and growth of fl ovules only partially. In addition, transcription of E6 and Expansin genes of in vitro cultured WT and fl ovules responded similarly to exogenous hormones. The hormones had less effect on Cot

  11. A comparative analysis of a fuzzless-lintless mutant of Gossypium hirsutum L. cv. Xu-142

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    A fuzzless-lintless (fl) seed mutant of Gossypium hirsutum L. cv. Xu-142 was investigated to study cotton fiber development. Scanning electron microscopy revealed that fiber initials were virtually absent from fl ovules. RT-PCR analysis showed that the steady-state levels of transcripts of the fiber-specific E6 and Expansin genes were high in wild type (WT) ovules during the fiber initiation and elongation stages, and peaked around 15 days post anthesis (DPA), but only a trace amount of these transcripts was detectable in fl ovules of all developmental stages investigated. CotmybA, a member of the Myb family, exhibited a clear expression in developing WT ovules, but the expression was abnormal in fl ovules. Application of GA3, or GA3 plus IAA, to the culture medium rescued in vitro fiber initiation and growth of fl ovules only partially. In addition, transcription of E6 and Expansin genes of in vitro cultured WT and fl ovules responded similarly to exogenous hormones. The hormones had less effect on CotmybA transcription in ovules cultured in vitro, and again the WT and fl ovules showed a similar expression. These results suggest that the abnormal or extremely low level of expression of E6, Expansin and CotmybA genes in developing fl seeds is related to the absence of seed-hairs, and the mechanism underlying needs further investigation.

  12. Genetic diversity and structure of elite cotton germplasm (Gossypium hirsutum L.) using genome-wide SNP data.

    Science.gov (United States)

    Ai, XianTao; Liang, YaJun; Wang, JunDuo; Zheng, JuYun; Gong, ZhaoLong; Guo, JiangPing; Li, XueYuan; Qu, YanYing

    2017-07-28

    Cotton (Gossypium spp.) is the most important natural textile fiber crop, and Gossypium hirsutum L. is responsible for 90% of the annual cotton crop in the world. Information on cotton genetic diversity and population structure is essential for new breeding lines. In this study, we analyzed population structure and genetic diversity of 288 elite Gossypium hirsutum cultivar accessions collected from around the world, and especially from China, using genome-wide single nucleotide polymorphisms (SNP) markers. The average polymorphsim information content (PIC) was 0.25, indicating a relatively low degree of genetic diversity. Population structure analysis revealed extensive admixture and identified three subgroups. Phylogenetic analysis supported the subgroups identified by STRUCTURE. The results from both population structure and phylogenetic analysis were, for the most part, in agreement with pedigree information. Analysis of molecular variance revealed a larger amount of variation was due to diversity within the groups. Establishment of genetic diversity and population structure from this study could be useful for genetic and genomic analysis and systematic utilization of the standing genetic variation in upland cotton.

  13. Performance of cotton (Gossypium hirsutum L.) lines selected for high productivity in three environments.

    Science.gov (United States)

    Turner, J H; Ferguson, D

    1975-01-01

    Three groups of cotton (Gossypium hirsutum L.) selections that had been screened in separate climatic zones within the San Joaquin Valley were tested for a 2-year period. Selection pressure had been applied solely upon productivity.Seven production attributes and eight fiber properties were influenced by the selection pressure on this material. The increase in number of bolls per m(2) virtually account for the genetic gains in yield.Environmental influences accounted for the larger part of the variability with both production and quality attributes. Years (seasons) and years x zone mean square values were highly significant for all production attributes except boll size. Fiber length was increased for one group of selections and decreased for the other two groups. Coarser fiber (micronaire increase) resulted from the selection effort with two groups.Genetic x environmental interactions encountered with major fiber properties have significant implications. The cryptic variability revealed indicates breeding procedures could be modified to exploit more fully the genetic potential of breeding material. Identifying and utilizing the "optimum selection enviroment" for specific attributes is suggested.

  14. Isolation and Analysis of Expansins from the Gossypium barbadense Cotton Elongating Fiber

    Institute of Scientific and Technical Information of China (English)

    TU Li-li; DENG Feng-lin; TAN Jia-fu; LI Yang; ZHANG Xian-long

    2008-01-01

    @@ Gossypium barbadense L.is one of the most valuable cotton species due to its silkiness,luster,long staple,and high strength.Transferring the excellent fiber traits from G.barbadense as the secondary gene pool to the widely cultivated G.hirsutum via traditional and molecular-aided selection is an attractive aim of breeders.

  15. Morphological, cytological and molecular analyses of a synthetic hexaploid derived from an interspecific hybrid between Gossypium hirsutum and Gossypium anomalum

    Directory of Open Access Journals (Sweden)

    Xia Zhang

    2014-10-01

    Full Text Available Gossypium anomalum represents an inestimable source of genes that could potentially be transferred into the gene pool of cultivated cotton. To resolve interspecific hybrid sterility problems, we previously treated triploid hybrids derived from a cross between Gossypium hirsutum and G. anomalum with 0.15% colchicine and obtained a putative fertile hexaploid. In this study, we performed morphological, molecular and cytological analyses to assess the hybridity and doubled status of putative interspecific hybrid plants. Most of the morphological characteristics of the putative hexaploid plants were intermediate between G. hirsutum and G. anomalum. Analysis of mitotic metaphase plates revealed 78 chromosomes, confirming the doubled hybrid status of the hexaploid. Genome-wide molecular analysis with different genome-derived SSR markers revealed a high level of polymorphism (96.6% between G. hirsutum and G. anomalum. The marker transferability rate from other species to G. anomalum was as high as 98.0%. The high percentage of polymorphic markers with additive banding profiles in the hexaploid indicates the hybridity of the hexaploid on a genome-wide level. A-genome-derived markers were more powerful for distinguishing the genomic differences between G. hirsutum and G. anomalum than D-genome-derived markers. This study demonstrates the hybridity and chromosomally doubled status of the (G. anomalum × G. hirsutum2 hexaploid using morphological, cytological and molecular marker methods. The informative SSR markers screened in the study will be useful marker resources for tracking the flow of G. anomalum genetic material among progenies that may be produced by future backcrosses to G. hirsutum.

  16. Morphological, cytological and molecular analyses of a synthetic hexaploid derived from an interspecific hybrid between Gossypium hirsutum and Gossypium anomalum

    Institute of Scientific and Technical Information of China (English)

    Xia; Zhang; Caijiao; Zhai; Linchi; He; Qi; Guo; Xianggui; Zhang; Peng; Xu; Hongmei; Su; Yuanyong; Gong; Wanchao; Ni; Xinlian; Shen

    2014-01-01

    Gossypium anomalum represents an inestimable source of genes that could potentially be transferred into the gene pool of cultivated cotton. To resolve interspecific hybrid sterility problems, we previously treated triploid hybrids derived from a cross between Gossypium hirsutum and G. anomalum with 0.15% colchicine and obtained a putative fertile hexaploid. In this study, we performed morphological, molecular and cytological analyses to assess the hybridity and doubled status of putative interspecific hybrid plants. Most of the morphological characteristics of the putative hexaploid plants were intermediate between G. hirsutum and G.anomalum. Analysis of mitotic metaphase plates revealed 78 chromosomes, confirming the doubled hybrid status of the hexaploid. Genome-wide molecular analysis with different genome-derived SSR markers revealed a high level of polymorphism(96.6%) between G. hirsutum and G. anomalum. The marker transferability rate from other species to G. anomalum was as high as 98.0%. The high percentage of polymorphic markers with additive banding profiles in the hexaploid indicates the hybridity of the hexaploid on a genome-wide level. A-genome-derived markers were more powerful for distinguishing the genomic differences between G. hirsutum and G. anomalum than D-genome-derived markers. This study demonstrates the hybridity and chromosomally doubled status of the(G. anomalum × G. hirsutum)2hexaploid using morphological, cytological and molecular marker methods. The informative SSR markers screened in the study will be useful marker resources for tracking the flow of G. anomalum genetic material among progenies that may be produced by future backcrosses to G. hirsutum.

  17. The immature fiber mutant phenotype of cotton (Gossypium hirsutum) is linked to a 22-bp frame-shift deletion in a mitochondria targeted pentatricopeptide repeat gene

    Science.gov (United States)

    Cotton seed trichomes are the globally most important source of natural fibers. The major fiber thickness properties influence the price of the raw material and the quality of the finished product. The recessive immature fiber (im) gene reduces the degree of fiber cell wall thickening by a process...

  18. Yield and fiber quality of five pairs of near-isogenic cotton (Gossypium hirsutum L.) lines expressing the fuzzless/linted and fuzzy/linted seed phenotypes

    Science.gov (United States)

    Fuzzless cotton often has traits desirable to the cotton industry, including longer fibers, reduced short fiber content, fewer neps, and improved ginning efficiency. This two-year field study described yield and fiber properties of five pairs of fuzzy and fuzzless near-isogenic lines, developed from...

  19. Mapping by sequencing in cotton (Gossypium hirsutum) line MD52ne identified candidate genes for fiber strength and its related quality attributes

    Science.gov (United States)

    Fiber strength, length, maturity and fineness determine the market value of cotton fibers and the quality of spun yarn. Cotton fiber strength has been recognized as a critical quality attribute in the modern textile industry. Fine mapping along with quantitative trait loci (QTL) validation and candi...

  20. Reniform nematode (Rotylenchulus reniformis) resistance locus from Gossypium aridum identified and introgressed into upland cotton (G. hirsutum)

    Science.gov (United States)

    SSR markers associated with reniform nematode (Rotylenchulus reniformis) resistance were identified and mapped using progeny from a cross between a tri-species hybrid [Gossypium arboreum × (G 371 - G. hirsutum × G. aridum -)] and G. hirsutum MD51ne. The 50 most resistant and 26 most susceptible prog...

  1. Spatial and Temporal Variation in Fungal Endophyte Communities Isolated from Cultivated Cotton (Gossypium hirsutum)

    OpenAIRE

    María J Ek-Ramos; Wenqing Zhou; Valencia, César U.; Antwi, Josephine B.; Kalns, Lauren L.; Gaylon D Morgan; David L. Kerns; Sword, Gregory A.

    2013-01-01

    Studies of fungi in upland cotton (Gossypium hirsutum) cultivated in the United States have largely focused on monitoring and controlling plant pathogens. Given increasing interest in asymptomatic fungal endophytes as potential biological control agents, surveys are needed to better characterize their diversity, distribution patterns and possible applications in integrated pest management. We sampled multiple varieties of cotton in Texas, USA and tested for temporal and spatial variation in f...

  2. Genome physical mapping of polyploids: a BIBAC physical map of cultivated tetraploid cotton, Gossypium hirsutum L.

    Science.gov (United States)

    Zhang, Meiping; Zhang, Yang; Huang, James J; Zhang, Xiaojun; Lee, Mi-Kyung; Stelly, David M; Zhang, Hong-Bin

    2012-01-01

    Polyploids account for approximately 70% of flowering plants, including many field, horticulture and forage crops. Cottons are a world-leading fiber and important oilseed crop, and a model species for study of plant polyploidization, cellulose biosynthesis and cell wall biogenesis. This study has addressed the concerns of physical mapping of polyploids with BACs and/or BIBACs by constructing a physical map of the tetraploid cotton, Gossypium hirsutum L. The physical map consists of 3,450 BIBAC contigs with an N50 contig size of 863 kb, collectively spanning 2,244 Mb. We sorted the map contigs according to their origin of subgenome, showing that we assembled physical maps for the A- and D-subgenomes of the tetraploid cotton, separately. We also identified the BIBACs in the map minimal tilling path, which consists of 15,277 clones. Moreover, we have marked the physical map with nearly 10,000 BIBAC ends (BESs), making one BES in approximately 250 kb. This physical map provides a line of evidence and a strategy for physical mapping of polyploids, and a platform for advanced research of the tetraploid cotton genome, particularly fine mapping and cloning the cotton agronomic genes and QTLs, and sequencing and assembling the cotton genome using the modern next-generation sequencing technology.

  3. Identification of a novel drought tolerance gene in Gossypium hirsutum L. cv KC3

    Directory of Open Access Journals (Sweden)

    Jagadeesh N. Selvam

    2009-02-01

    Full Text Available Development of drought resistant cotton cultivars has long been a major breeding objective, since water stress limits fiber production and productivity. Recent advances in functional genomics can increase the efficiency of conventional breeding for genetic improvement of crop plants for improved abiotic stress resistance. To this end, a novel drought resistance gene was identified by comparing the gene expression profile of Gossypium hirsutum cv KC3 and MCU12 by employing a cDNA-RAPD approach. Physiological and biochemical studies showed that KC3 has relatively better drought tolerance than MCU12. Among 25 random primers, OPA15 has identified differentially expressed cDNA in KC3. Results of BLASTP algorithm have shown that this cDNA has significant homology with P-Glycoprotein, ACC oxidase2 and ABC transporter which are involved either directly, or indirectly, in stress tolerance in animals and plants. Hence, the cDNA sequence identified in this study may be a novel gene that confers drought resistance in cotton as KC3 is well adapted and is widely cultivated in rain-fed tracts of Tamil Nadu, India. Further characterization of this gene may show it has potential application for development of cotton with improved drought resistance, through genetic engineering and/or marker aided selection (MAS

  4. Improvement of cotton fiber quality by transforming the acsA and acsB genes into Gossypium hirsutum L. by means of vacuum infiltration.

    Science.gov (United States)

    Li, X; Wang, X D; Zhao, X; Dutt, Y

    2004-04-01

    A novel method for the genetic transformation of cotton pollen by means of vacuum infiltration and Agrobacterium-mediated transformation is reported. The acsA and acsB genes, which are involved in cellulose synthesis in Acetobacter xylinum, were transferred into pollen grains of brown cotton with the aim of improving its fiber quality by incorporating useful prokaryotic features into the colored cotton plants. Transformation was carried out in cotton pollen-germinating medium, and transformation was mediated by vector pCAMBIA1301, which contains a reporter gene beta-glucuronidase (GUS), a selectable marker gene, hpt, for hygromycin resistance and the genes of interest, acsA and acsB. The integration and expression of acsA, acsB and GUS in the genome of transgenic plants were analyzed with Southern blot hybridization, PCR, histochemical GUS assay and Northern blot hybridization. We found that following pollination on the cotton stigma transformed pollen retained its capability of double-fertilization and that normal cotton seeds were produced in the cotton ovary. Of 1,039 seeds from 312 bolls pollinated with transformed pollen grains, 17 were able to germinate and grow into seedlings for more than 3 weeks in a nutrient medium containing 50 mg/l hygromycin; eight of these were transgenic plants integrated with acsA and acsB, yielding a 0.77% transformation rate. Fiber strength and length from the most positive transformants was 15% greater than those of the control (non-transformed), a significant difference, as was cellulose content between the transformed and control plants. Our study suggests that transformation through vacuum infiltration and Agrobacterium mediated transformation can be an efficient way to introduce foreign genes into the cotton pollen grain and that cotton fiber quality can be improved with the incorporation of the prokaryotic genes acsA and acsB.

  5. Comprehensive cytological characterization of the Gossypium hirsutum genome based on the development of a set of chromosome cytological markers

    Directory of Open Access Journals (Sweden)

    Wenbo Shan

    2016-08-01

    Full Text Available Cotton is the world's most important natural fiber crop. It is also a model system for studying polyploidization, genomic organization, and genome-size variation. Integrating the cytological characterization of cotton with its genetic map will be essential for understanding its genome structure and evolution, as well as for performing further genetic-map based mapping and cloning. In this study, we isolated a complete set of bacterial artificial chromosome clones anchored to each of the 52 chromosome arms of the tetraploid cotton Gossypium hirsutum. Combining these with telomere and centromere markers, we constructed a standard karyotype for the G. hirsutum inbred line TM-1. We dissected the chromosome arm localizations of the 45S and 5S rDNA and suggest a centromere repositioning event in the homoeologous chromosomes AT09 and DT09. By integrating a systematic karyotype analysis with the genetic linkage map, we observed different genome sizes and chromosomal structures between the subgenomes of the tetraploid cotton and those of its diploid ancestors. Using evidence of conserved coding sequences, we suggest that the different evolutionary paths of non-coding retrotransposons account for most of the variation in size between the subgenomes of tetraploid cotton and its diploid ancestors. These results provide insights into the cotton genome and will facilitate further genome studies in G. hirsutum.

  6. (Gossypium hirsutum L.) varieties from Azerbaijan in Southeast ...

    African Journals Online (AJOL)

    user1

    2013-08-14

    Aug 14, 2013 ... Australian bred cotton (five G. hirsutum L. and one G. barbadense L.) ... Cotton Development Board (CDB) varieties namely CB-1,. CB-5 and CB-9 at four .... temperature is 17.1°C, average rainfall is 369.3 mm and average ...... Meteorological Directorate of Şanliurfa, Monthly Weather Reports,. Şanliurfa.

  7. Mosquito Larvicidal Potential of Gossypium hirsutum (Bt cotton) Leaves Extracts against Aedes aegypti and Anopheles stephensi larvae.

    OpenAIRE

    Patil, Chandrashekhar D; Hemant P Borase; Salunkhe, Rahul B; Rahul K Suryawanshi; Narkhade, Chandrakant P; Salunke, Bipinchandra K.; Satish V Patil

    2014-01-01

    Background: We aimed to extract the ingredients from leaves of Gossypium hirsutum (Bt cotton) using different solvents and evaluate for potential use to control different larval stages of mosquito species, Aedes aegypti and Anopheles stephensi. Methods: Qualitative and quantitative estimation of ingredients from Go. hirsutum (Bt) plant extract was carried out and their inhibitory action against mosquito larvae was determined using mosquito larvicidal assay. Results: LC50 values of water, etha...

  8. Comparative analysis of genome-wide divergence, domestication footprints and genome-wide association study of root traits for Gossypium hirsutum and Gossypium barbadense

    Science.gov (United States)

    Use of 10,129 singleton SNPs of known genomic location in tetraploid cotton provided unique opportunities to characterize genome-wide diversity among 440 Gossypium hirsutum and 219 G. barbadense cultivars and landrace accessions of widespread origin. Using genome-wide distributed SNPs, we examined ...

  9. Genome-wide divergence, haplotype distribution and population demographic histories for Gossypium hirsutum and Gossypium barbadense as revealed by genome-anchored SNPs

    Science.gov (United States)

    Use of 10,129 singleton SNPs of known genomic location in tetraploid cotton provided unique opportunities to characterize genome-wide diversity among 440 Gossypium hirsutum and 219 G. barbadense cultivars and landrace accessions of widespread origin. Using the SNPs distributed genome-wide, we exami...

  10. Cotton (Gossypium hirsutum L.) boll rotting bacteria vectored by the brown stink bug, Euschistus servus (Say) (Hemiptera: Pentatomidea)

    Science.gov (United States)

    Determine the capacity of the brown stink bug (Euschistus servus) to transmit an infective Pantoea agglomerans into cotton (Gossypium hirsutum, L.) bolls. A laboratory colony of the brown stink bug (BSB) was maintained on fresh green beans. The P. agglomerans mutant strain Sc 1-R that holds rifamp...

  11. Selection and Characterization of a Novel Glyphosate Tolerant Upland Cotton(Gossypium hirsutum L.) Mutant(R1098)

    Institute of Scientific and Technical Information of China (English)

    DAUD; M; K

    2008-01-01

    Stepwise selection approach was adopted to obtain glyphosate-tolerant upland cotton mutant(R1098) from the embryogenic calli of Coker 312(Gossypium hirsutum L.).The calli were transferred to selection medium and multi-step selection pressure process was carried out until the calli

  12. Períodos de interferência das plantas daninhas na cultura do algodoeiro (Gossypium hirsutum Weed interference periods in cotton crop (Gossypium hirsutum

    Directory of Open Access Journals (Sweden)

    T.P. Salgado

    2002-12-01

    Full Text Available Com o objetivo de determinar os efeitos de períodos de controle e de convivência das plantas daninhas na produtividade da cultura do algodoeiro (Gossypium hirsutum, cultivar Delta-Opal, realizou-se um experimento que constou de dois grupos de tratamentos. No primeiro, a cultura permaneceu livre da competição das plantas daninhas desde a emergência até 7, 14, 21, 28, 35, 42, 49, 56, 63 dias e colheita (159 dias. No segundo, a cultura permaneceu em competição com a comunidade infestante desde a emergência até os mesmos períodos descritos para a primeira série de tratamentos. Dentre as espécies de plantas daninhas encontradas na área experimental, destacaram-se a tiririca (Cyperus rotundus, o fedegoso (Senna obtusifolia, a anileira (Indigofera hirsuta e o capim-carrapicho (Cenchrus echinatus. Pelas condições edáficas, climáticas e florísticas sob as quais foi conduzida a cultura de algodão, o Período Anterior à Interferência (PAI dessa comunidade que reduziu em 5% a produtividade da cultura foi de oito dias após a emergência da cultura (DAE; o Período Total de Prevenção da Interferência (PTPI foi de 66 DAE; e o Período Crítico de Prevenção da Interferência (PCPI foi dos 8 aos 66 DAE.In order to evaluate the effects of weed control and weed coexistence periods on cotton (Gossypium hirsutum cultivar Delta Opal yield, an experiment was carried out consisting of two treatment groups. In the first, the crop was weed free from from emergence until 7, 14, 21, 28, 35, 42, 49, 56, 63 days, and harvest (159 days respectively. In the second group, the crop was in competition with the weed community from emergence until the same period, as described for the first series of treatment, respectively. Among the weed species found in the experimental area, the most important were purple nutsedge (Cyperus rotundus, sicklepod (Senna obtusifolia, indigo (Indigofera hirsuta and sandbur (Cenchrus echinatus. The period after cotton plant

  13. Cytogenetic Characteristics of New Monosomic Stocks of Cotton (Gossypium hirsutum L.

    Directory of Open Access Journals (Sweden)

    Marina F. Sanamyan

    2011-01-01

    Full Text Available The use of aneuploid lines significantly increases the effectiveness of molecular-genetic analysis and the development of superior quality breeding lines via substitutions by alien chromosomes. To date, however, a complete set of aneuploid series for each cotton chromosome is not available. Here, we present the development of a monosomic stock collection of cotton (Gossypium hirsutum L. from Uzbekistan, including the origin of 92 primary monosomics, meiotic metaphase-I analysis, study of tetrads of microspores, pollen fertility, and monosomic transmission rates for some monosomic lines. We report desynaptic effects of some monosomes detected both in parental and daughter monosomics, a positive role of interchanges in translocation heterozygous monosomics due to selective advantages of gametes with deficiency and a simultaneous interchange, pollen fertility variation, and strong differences in transmission rates. This monosomic cotton collection, developed using single genome background, will be useful for future breeding, genetic, cytogenetic, and molecular-genetic investigations of the cotton genome.

  14. Cytogenetic Characteristics of New Monosomic Stocks of Cotton (Gossypium hirsutum L.).

    Science.gov (United States)

    Sanamyan, Marina F; Petlyakova, Julia E; Sharipova, Elnora A; Abdurakhmonov, Ibrokhim Y

    2011-01-01

    The use of aneuploid lines significantly increases the effectiveness of molecular-genetic analysis and the development of superior quality breeding lines via substitutions by alien chromosomes. To date, however, a complete set of aneuploid series for each cotton chromosome is not available. Here, we present the development of a monosomic stock collection of cotton (Gossypium hirsutum L.) from Uzbekistan, including the origin of 92 primary monosomics, meiotic metaphase-I analysis, study of tetrads of microspores, pollen fertility, and monosomic transmission rates for some monosomic lines. We report desynaptic effects of some monosomes detected both in parental and daughter monosomics, a positive role of interchanges in translocation heterozygous monosomics due to selective advantages of gametes with deficiency and a simultaneous interchange, pollen fertility variation, and strong differences in transmission rates. This monosomic cotton collection, developed using single genome background, will be useful for future breeding, genetic, cytogenetic, and molecular-genetic investigations of the cotton genome.

  15. Using Genome-Referenced Expressed Sequence Tag Assembly to Analyze the Origin and Expression Patterns of Gossypium hirsutum Transcripts

    Institute of Scientific and Technical Information of China (English)

    Xiang Jin; Qin Li; Guanghui Xiao; Yu-Xian Zhu

    2013-01-01

    We assembled a total of 297,239 Gossypium hirsutum (Gh,a tetraploid cotton,AADD) expressed sequence tag (EST) sequences that were available in the National Center for Biotechnology Information database,with reference to the recently published G.raimondii (Gr,a diploid cotton,DD) genome,and obtained 49,125 UniGenes.The average lengths of the UniGenes were increased from 804 and 791 bp in two previous EST assemblies to 1,019 bp in the current analysis.The number of putative cotton UniGenes with lengths of 3 kb or more increased from 25 or 34 to 1,223.As a result,thousands of originally independent G.hirsutum ESTs were aligned to produce large contigs encoding transcripts with very long open reading frames,indicating that the G.raimondii genome sequence provided remarkable advantages to assemble the tetraploid cotton transcriptome.Significant different distribution patterns within several GO terms,including transcription factor activity,were observed between D-and A-derived assemblies.Transcriptome analysis showed that,in a tetraploid cotton cell,29,547 UniGenes were possibly derived from the D subgenome while another 19,578 may come from the A subgenome.Finally,some of the in silico data were confirmed by reverse transcription polymerase chain reaction experiments to show the changes in transcript levels for several gene families known to play key role in cotton fiber development.We believe that our work provides a useful platform for functional and evolutionary genomic studies in cotton.

  16. RNA-seq analysis of short fiber mutants Ligon-lintless-1 (Li1) and – 2 (Li2) revealed important role of aquaporins in cotton (Gossypium hirsutum L.) fiber elongation

    Science.gov (United States)

    Cotton fiber is the most prevalent natural raw material used in the textile industry. The length of the fiber is one of the most important characteristics and affects spinning efficiency and the quality of the resulting yarn. The identification of the genes that control fiber elongation is importa...

  17. Biochemical Genetic Mechanism and QTLs of Early Maturing without Yield Loss in Short-season Upland Cotton (Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    SONG Mei-zhen; YU Shu-xun; FAN Shu-li

    2008-01-01

    @@ The short season cotton (SSC) was important Upland plant ecotype (Gossypium hirsutum L.).The growth of SSC was very short that is 105~110 days (after planting).SSC could increase plant index and farmer incomes on the same soil in one year.However,there was a contradiction between the early maturing and high-yield potential of SSC varieties that restrict SSC development.The SSC varieties often exhibited premature senescence.

  18. Molecular cloning and functional analysis of the FLOWERING LOCUS T (FT) homolog GhFT1 from Gossypium hirsutum

    Institute of Scientific and Technical Information of China (English)

    Danli Guo; Chao Li; Rui Dong; Xiaobo Li; Xiangwen Xiao; Xianzhong Huang

    2015-01-01

    FLOWERING LOCUS T (FT) encodes a member of the phosphatidylethanolamine-binding protein (PEBP) family that functions as the mobile floral signal, playing an important role in regulating the floral transition in angiosperms. We isolated an FT-homolog (GhFT1) from Gossypium hirsutum L. cultivar, Xinluzao 33 GhFT1 was predominantly expressed in stamens and sepals, and had a relatively higher expression level during the initiation stage of fiber development. GhFT1 mRNA displayed diurnal oscillations in both long-day and short-day condition, suggesting that the expression of this gene may be under the control of the circadian clock. Subcel ular analysis revealed that GhFT1 protein located in the cytoplasm and nucleus. Ectopic expression of GhFT1 in transgenic arabidopsis plants resulted in early flowering compared with wild-type plants. In addition, ectopic expression of GhFT1 in arabidopsis ft-10 mutants partial y rescued the extremely late flowering phenotype. Finally, several flowering related genes functioning downstream of AtFT were highly upregulated in the 35S::GhFT1 transgenic arabidopsis plants. In summary, GhFT1 is an FT-homologous gene in cotton that regulates flower transition similar to its orthologs in other plant species and thus it may be a candidate target for promoting early maturation in cotton breeding.

  19. A new interspecific, Gossypium hirsutum x G. barbadense, RIL population: towards a unified consensus linkage map of tetraploid cotton.

    Science.gov (United States)

    Lacape, Jean-Marc; Jacobs, J; Arioli, T; Derijcker, R; Forestier-Chiron, N; Llewellyn, D; Jean, J; Thomas, E; Viot, C

    2009-07-01

    We report the development of a new interspecific cotton recombinant inbred line (RIL) population of 140 lines deriving from an interspecific cross between Gossypium hirsutum (Gh) and G. barbadense (Gb), using the same two parents that have served for the construction of a BC(1) map and for the marker-assisted backcross selection program underway at CIRAD. Two marker systems, microsatellites and AFLPs, were used. An important feature of the RIL population was its marked segregation distortion with a genome-wide bias to Gh alleles (parental genome ratio is 71/29). The RIL map displays an excellent colinearity with the BC(1) map, although it is severely contracted in terms of map size. Existence of 255 loci in common (between 6 and 14 per chromosome) allowed the integration of the two data sets. A consensus BC(1)-RIL map based upon 215 individuals (75 BC1 + 140 RIL) was built. It consisted of 1,745 loci, spanned 3,637 cM, intermediate between the sizes of the two component maps, and constituted a solid framework to cross align cotton maps using common markers. The new RIL population will be further exploited for fiber property QTL mapping and eQTL mapping.

  20. Quantitative trait loci mapping and genetic dissection for lint percentage in upland cotton (Gossypium hirsutum)

    Indian Academy of Sciences (India)

    Min Wang; Chengqi Li; Qinglian Wang

    2014-08-01

    Lint percentage is an important character of cotton yield components and it is also correlated with cotton fibre development. In this study, we used a high lint percentage variety, Baimian1, and a low lint percentage, TM-1 genetic standard for Gossypium hirsutum, as parents to construct a mapping populations in upland cotton (G. hirsutum). A quantitative trait locus/loci (QTL) analysis of lint percentage was performed by using two mapping procedures; composite interval mapping (CIM), inclusive composite interval mapping (ICIM) and the F2:3 populations in 2 years. Six main-effect QTL (M-QTL) for lint percentage (four significant and two suggestive) were detected in both years by CIM, and were located on chr. 3, chr. 19, chr. 26 and chr. 5 /chr. 19. Of the six QTL, marker intervals and favourable gene sources of the significant M-QTL, qLP-3(2010) and qLP-3(2011) were consistent. These QTL were also detected by ICIM, and therefore, should preferentially be used for marker-assisted selection (MAS) of lint percentage. Another M-QTL, qLP-19(2010), was detected by two mapping procedures, and it could also be a candidate for MAS. We detected the interaction between two M-QTL and environment, and 11 epistatic QTL (E-QTL) and their interaction with environment by using ICIM. The study also found two EST-SSRs, NAU1187 and NAU1255, linked to M-QTL for lint percentage that could be candidate markers affecting cotton fibre development.

  1. Quantitative trait loci mapping and genetic dissection for lint percentage in upland cotton (Gossypium hirsutum).

    Science.gov (United States)

    Wang, Min; Li, Chengqi; Wang, Qinglian

    2014-08-01

    Lint percentage is an important character of cotton yield components and it is also correlated with cotton fibre development. In this study, we used a high lint percentage variety, Baimian1, and a low lint percentage, TM-1 genetic standard for Gossypium hirsutum, as parents to construct a mapping populations in upland cotton (G. hirsutum). A quantitative trait locus/loci (QTL) analysis of lint percentage was performed by using two mapping procedures; composite interval mapping (CIM), inclusive composite interval mapping (ICIM) and the F2:3 populations in 2 years. Six main-effect QTL (M-QTL) for lint percentage (four significant and two suggestive) were detected in both years by CIM, and were located on chr. 3, chr. 19, chr. 26 and chr. 5/chr. 19. Of the six QTL, marker intervals and favourable gene sources of the significant M-QTL, qLP-3(2010) and qLP-3(2011) were consistent. These QTL were also detected by ICIM, and therefore, should preferentially be used for markerassisted selection (MAS) of lint percentage. Another M-QTL, qLP-19(2010), was detected by two mapping procedures, and it could also be a candidate for MAS. We detected the interaction between two M-QTL and environment, and 11 epistatic QTL (E-QTL) and their interaction with environment by using ICIM. The study also found two EST-SSRs, NAU1187 and NAU1255, linked to M-QTL for lint percentage that could be candidate markers affecting cotton fibre development.

  2. Targeted mutagenesis in cotton (Gossypium hirsutum L.) using the CRISPR/Cas9 system

    Science.gov (United States)

    Chen, Xiugui; Lu, Xuke; Shu, Na; Wang, Shuai; Wang, Junjuan; Wang, Delong; Guo, Lixue; Ye, Wuwei

    2017-01-01

    The CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)/Cas9 system has been widely used for genome editing in various plants because of its simplicity, high efficiency and design flexibility. However, to our knowledge, there is no report on the application of CRISPR/Cas9-mediated targeted mutagenesis in cotton. Here, we report the genome editing and targeted mutagenesis in upland cotton (Gossypium hirsutum L., hereafter cotton) using the CRISPR/Cas9 system. We designed two guide RNAs to target distinct sites of the cotton Cloroplastos alterados 1 (GhCLA1) and vacuolar H+-pyrophosphatase (GhVP) genes. Mutations in these two genes were detected in cotton protoplasts. Most of the mutations were nucleotide substitutions, with one nucleotide insertion and one substitution found in GhCLA1 and one deletion found in GhVP in cotton protoplasts. Subsequently, the two vectors were transformed into cotton shoot apexes through Agrobacterium-mediated transformation, resulting in efficient target gene editing. Most of the mutations were nucleotide deletions, and the mutation efficiencies were 47.6–81.8% in transgenic cotton plants. Evaluation using restriction-enzyme-PCR assay and sequence analysis detected no off-target mutations. Our results indicated that the CRISPR/Cas9 system was an efficient and specific tool for targeted mutagenesis of the cotton genome. PMID:28287154

  3. Dominant Gene cplsr1 Corresponding to Premature Leaf Senescence Resistance in Cotton (Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    Jingqing Zhao; Tengfei Jiang; Zhi Liu; Wenwei Zhang; Guiliang Jian; Fangjun Qi

    2012-01-01

    Cotton (Gossypium hirsutum L.) premature leaf senescence-resistant inbred XLZ33 and senescencesusceptible inbred lines XLZ13 were selected and crossed to produce F1,F1-reciprocal,F2 and BC1 generations for evaluation of leaf senescence process and inheritance.The results showed that leaf senescence processes for XLZ13 and XLZ33 were obviously different and leaf senescence traits could be distinguished between the two parents at particular periods of cotton growth.Inheritance anlysis for the cotton premature leaf senescence resistant trait further showed that the segregation in the F2 fit a 3:1 ratio inheritance pattern,with resistance being dominant.The backcross of F1 to the susceptible parent produced a 1:1 ratio,confirming that cotton premature leaf senescence resistant trait was from a single gene.The single dominant gene controlling cotton premature leaf senescence resistance in XLZ33 was named as cotton premature leaf senescence resistance 1,with the symbol cplsr1.

  4. Urease from cotton (Gossypium hirsutum) seeds: isolation, physicochemical characterization, and antifungal properties of the protein.

    Science.gov (United States)

    Menegassi, Angela; Wassermann, German E; Olivera-Severo, Deiber; Becker-Ritt, Arlete B; Martinelli, Anne Helene S; Feder, Vanessa; Carlini, Celia R

    2008-06-25

    Ureases (EC 3.5.1.5) are metalloenzymes that hydrolyze urea to produce ammonia and carbon dioxide These enzymes, which are found in fungi, bacteria, and plants, show very similar structures. Despite an abundance of urease in vegetal tissues, the physiological role of this enzyme in plants is still poorly understood. It has been previously described that ureases from the legumes jackbean ( Canavalia ensiformis) and soybean ( Glycine max) have insecticidal activity and antifungal properties. This work presents the physicochemical purification and characterization of a urease from cotton ( Gossypium hirsutum) seeds, the first description of this enzyme in Malvaceae. The urease content varied among different cotton cultivars. Cotton seed urease (98.3 kDa) displayed low ureolytic activity but exhibited potent antifungal properties at sub-micromolar concentrations against different phytopathogenic fungi. As described for other ureases, the antifungal effect of cotton urease persisted after treatment with an irreversible inhibitor of its enzyme activity. The data suggest an important role of these proteins in plant defense.

  5. Microarray-based large scale detection of single feature polymorphism in Gossypium hirsutum L.

    Indian Academy of Sciences (India)

    Anukool Srivastava; Samir V. Sawant; Satya Narayan Jena

    2015-12-01

    Microarrays offer an opportunity to explore the functional sequence polymorphism among different cultivars of many crop plants. The Affymetrix microarray expression data of five genotypes of Gossypium hirsutum L. at six different fibre developmental stages was used to identify single feature polymorphisms (SFPs). The background corrected and quantile-normalized log2 intensity values of all probes of triplicate data of each cotton variety were subjected to SFPs call by using SAM procedure in R language software. We detected a total of 37,473 SFPs among six pair genotype combinations of two superior (JKC777 and JKC725) and three inferior (JKC703, JKC737 and JKC783) using the expression data. The 224 SFPs covering 51 genes were randomly selected from the dataset of all six fibre developmental stages of JKC777 and JKC703 for validation by sequencing on a capillary sequencer. Of these 224 SFPs, 132 were found to be polymorphic and 92 monomorphic which indicate that the SFP prediction from the expression data in the present study confirmed a ∼ 58.92% of true SFPs. We further identified that most of the SFPs are associated with genes involved in fatty acid, flavonoid, auxin biosynthesis etc. indicating that these pathways significantly involved in fibre development.

  6. Association of AFLP and SSR markers with agronomic and fibre quality traits in Gossypium hirsutum L.

    Indian Academy of Sciences (India)

    Arunita Rakshit; S. Rakshit; J. Singh; S. K. Chopra; H. S. Balyan; P. K. Gupta; Shripad R. Bhat

    2010-08-01

    Molecular markers linked to QTL contributing to agronomic and fibre quality traits would be useful for cotton improvement. We have attempted to tag yield and fibre quality traits with AFLP and SSR markers using F2 and F3 populations of a cross between two Gossypium hirsutum varieties, PS56-4 and RS2013. Out of 50 AFLP primer combinations and 177 SSR primer pairs tested, 32 AFLP and four SSR primers were chosen for genotyping F2 individuals.Marker-trait associations were studied for eight agronomic and five fibre quality traits through simple and multiple regression analysis (MRA) using a set of 92 AFLP polymorphic loci and four SSR markers. Simple linear regression analysis (SLRA) identified 23 markers for eight different traits whereas multiple regression analysis identified 30 markers for at least one of the 13 traits. SSR marker BNL 3502 was consistently identified to be associated with fibre strength. While all the markers identified in SLRA were also detected in MRA, as many as 16 of the 30 markers were identified to be associated with respective traits in both F2 and F3 generations. The markers explained up to 41 per cent of phenotypic variation for individual traits. A number of markers were found to be associated with multiple traits suggesting clustering of QTLs for fibre quality traits in cotton.

  7. Characteristics of Photosystem II Behavior in Cotton (Gossypium hirsutum L.) Bract and Capsule Wall

    Institute of Scientific and Technical Information of China (English)

    ZHANG Ya-li; LUO Hong-hai; HU Yuan-yuan; Reto J. Strasser; ZHANG Wang-feng

    2013-01-01

    Though bract and capsule wall of boll in cotton (Gossypium hirsutum L.) have different photosynthetic capacities, the features of photosystem II (PS II) in these organs are scarce. In this paper, chlorophyll a lfuorescence emission was measured to investigate the difference in the photosynthetic apparatus of dark-acclimated (JIP-test) and light-acclimated (light-saturation pulse method) bract and capsule wall. Compared with leaves, the oxygen evolving system of non-foliar organs had lower efifciency. The pool size of PS II electron acceptor of non-foliar organs was small, and the photochemical activity of leaves was higher than that of the bract and capsule wall. In regard to the photosystem I (PS I) electron acceptor side, the pool size of end electron acceptors of leaves was larger, and the quantum yield of electron transport from QA (PS II primary plastoquinone acceptor) further than the PS I electron acceptors of leaves was higher than that of bract and capsule wall. In all green organs, the actual quantum yield of photochemistry decreased with light. The thermal dissipation fraction of light absorbed by the PS II antennae was the highest in bract and the lowest in capsule wall relative to leaves. Compared with leaves, capsule wall was characterized by less constitutive thermal dissipation and via dissipation as lfuorescence emission. These results suggested that lower PS II photochemical activity in non-foliar organs may be result from limitations at the donor side of PS II and the acceptor sides of both photosystems.

  8. Salt Tolerance Evaluation in Cotton (Gossypium hirsutum L. Using RAPD Marker

    Directory of Open Access Journals (Sweden)

    Basel Saleh

    2015-12-01

    Full Text Available The aim of this study was to evaluate four upland cotton (Gossypium hirsutum L. [Niab78 (N78, Deir-Ezzor22 (DE22, Deltapine50 (DP50 and Aleppo118 (A118] varieties towards salt stress (0 and 200 mM NaCl for 7 weeks based on RAPD marker. Our data showed that the highest total polymorphic bands identified by the 26 RAPD tested primers were 150 bands generated by N78 variety, while the lowest ones were recorded for DP50 (29 bands. Otherwise, unique (negative and positive markers characterized the two tolerant varieties (N78 and DE22 were 22 and 29 markers, respectively. Our data indicated that the highest polymorphism level was detected in N78 variety (68.5% followed by DE22 (60.9%, whereas, the lowest one was recorded for DP50 (21.3%. Our data obtained herein indicates that RAPD marker provided molecular markers for salinity tolerance screening in early stage in genetic improvement programs.

  9. Hibridação interespecífica entre Gossmum hirsutum L. var. latifolium e G. Herbaceum L. var. africanum Interespecific hybridization between Gossypium hirsutum var. latifolium and G. Herbaceum var. africanum

    Directory of Open Access Journals (Sweden)

    Ederaldo José Chiavegato

    1985-01-01

    Full Text Available Foi obtida, pelos autores, variabilidade genética para resistência da fibra do algodoeiro a partir da hibridação entre a espécie alotetraplóide cultivada Gossypium hirsutum L. var. latifolium Hutch. e a espécie diplóide selvagem G. herbaceum L. vai. africanum Hutch. A metodologia empregada e as características agronômicas e tecnológicas da fibra do híbrido são descritas e discutidas. Visando à duplicação do número de cromossomos da espécie diplóide, foram realizados nove tratamentos com o alcalóide colchicina, em solução aquosa e em adição com pasta de lanolina, com diferentes concentrações e tempo de ação para o tratamento de sementes, radicelas e gemas apicais: revelou-se mais eficiente o de gemas apicais com colchicina a 1%, em pasta de lanolina, durante 32 horas. Diversos cruzamentos das plantas duplicadas com variedades comerciais de algodoeiro levaram à obtenção de híbrido estéril. A seguir, dois retrocruzamentos foram realizados, sendo que, a partir do primeiro, a fertilidade foi restaurada. Estas plantas, com características agronômicas promissoras, possuem grande variabilidade para resistência da fibra, num nível superior ao de G. hirsutum.Genetic variability was obtained by the authors for fiber strenght in cotton, through hybridization between the cultivated alotetraploid species Gossypium hirsutum L. var. latifolium Hutch. and the wild diploid species G. herbaceum L. africanum Hutch. The underlying methods and the hybrid's characteristics are reported and described. As a first step, the number of chromosomes in the diploid species was duplicated. Nine treatments with aqueous colchicina or colchicina in lanolina paste were carried out, comprising several concentrations and times of application to seeds, radicles and apical buds of the main stem. Success was obtained by treating apical buds with lanolina paste containing 1% colchicina, during 32 hours. Two hundred fourty five crosses between the

  10. An Integrated Genetic,Physical and Transcript Map of Homoeologous Chromosomes 12 and 26 in Upland Cotton (Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    XU Zhang-you; KOHEL Russell J; SONG Guo-li; CHO Jaemin; YU Jing; YU Shu-xun; TOMKINS Jeffrey; YU John Z

    2008-01-01

    @@ While Upland cotton (Gossypium hirsutum L.) represents 95% of the world production,its genetic improvement is hindered by the shortage of effective genomic tools and resources.The complex allotetraploid genome of the Upland cotton presents a unique challenge to such research efforts including integrated genome mapping and sequencing,which are considered highly experimental.Here,we report an integrated genetic,physical,and transcript map of homoeologous chromosomes 12 and 26 based on BAC/BIBAC clones,DNA markers,and EST unigenes.

  11. Genes expressed in cotton (Gossypium hirsutum) buds isolated with a subtractive library.

    Science.gov (United States)

    Pinheiro, M P N; Batista, V G L; Martins, N F; Santos, R C; Melo Filho, P A; Silva, C R C; Lima, L M

    2013-01-16

    A subtractive cDNA library from cotton buds was constructed to prospect for differentially expressed genes related to early bud development. A library was constructed and 768 cDNA sequences were obtained, comprising 168 clusters, with 126 contigs and 42 singlets. Both the Gossypium as well as Arabidopsis databases were utilized for the in silico analysis, since some genes identified in cotton have not yet been studied for functionality, although they have homology with genes from other species. The transcriptome revealed a large number of transcripts, some of them with unknown function, and others related to pollen development, pollen tubes, ovules, and fibers at different stages. The most populated contig was identified as fiber from 0-10 days after anthesis, with 12 reads. The success and novelty rates generated from the library were 67 and 51%, respectively. The information obtained here will provide a framework for research on functional cotton genomics.

  12. Cloning and characterization of a gene encoding cysteine proteases from senescent leaves of Gossypium hirsutum

    Institute of Scientific and Technical Information of China (English)

    SHEN Fafu; YU Shuxun; HAN Xiulan; FAN Shuli

    2004-01-01

    A gene encoding a cysteine proteinase was isolated from senescent leave of cotton (Gossypium hirsutum) cv liaomian No. 9 by utilizing rapid amplification of cDNA ends polymerase chain reaction (RACE-PCR), and a set of consensus oligonucleotide primers was designed to anneal the conserved sequences of plant cysteine protease genes. The cDNA, which designated Ghcysp gene, contained 1368 bp terminating in a poly(A)+ trail, and included a putative 5′(98 bp) and a 3′(235 bp) non-coding region. The opening reading frame (ORF) encodes polypeptide 344 amino acids with the predicted molecular mass of 37.88 kD and theoretical pI of 4.80. A comparison of the deduced amino acid sequence with the sequence in the GenBank database has shown considerable sequence similarity to a novel family of plant cysteine proteases. This putative cotton Ghcysp protein shows from 67% to 82% identity to the other plants. All of them share catalytic triad of residues, which are highly conserved in three regions. Hydropaths analysis of the amino acid sequence shows that the Ghcysp is a potential membrane protein and localizes to the vacuole, which has a transmembrane helix between resides 7-25. A characteristic feature of Ghcysp is the presence of a putative vacuole-targeting signal peptide of 19-amino acid residues at the N-terminal region. The expression of Ghcysp gene was determined using northern blot analysis. The Ghcysp mRNA levels are high in development senescent leaf but below the limit of detection in senescent root, hypocotyl, faded flower, 6 d post anthesis ovule, and young leaf.

  13. Identification of semiochemicals released by cotton, Gossypium hirsutum, upon infestation by the cotton aphid, Aphis gossypii.

    Science.gov (United States)

    Hegde, Mahabaleshwar; Oliveira, Janser N; da Costa, Joao G; Bleicher, Ervino; Santana, Antonio E G; Bruce, Toby J A; Caulfield, John; Dewhirst, Sarah Y; Woodcock, Christine M; Pickett, John A; Birkett, Michael A

    2011-07-01

    The cotton aphid, Aphis gossypii (Homoptera: Aphididae), is increasing in importance as a pest worldwide since the introduction of Bt-cotton, which controls lepidopteran but not homopteran pests. The chemical ecology of interactions between cotton, Gossypium hirsutum (Malvaceae), A. gossypii, and the predatory lacewing Chrysoperla lucasina (Neuroptera: Chrysopidae), was investigated with a view to providing new pest management strategies. Behavioral tests using a four-arm (Pettersson) olfactometer showed that alate A. gossypii spent significantly more time in the presence of odor from uninfested cotton seedlings compared to clean air, but significantly less time in the presence of odor from A. gossypii infested plants. A. gossypii also spent significantly more time in the presence of headspace samples of volatile organic compounds (VOCs) obtained from uninfested cotton seedlings, but significantly less time with those from A. gossypii infested plants. VOCs from uninfested and A. gossypii infested cotton seedlings were analyzed by gas chromatography (GC) and coupled GC-mass spectrometry (GC-MS), leading to the identification of (Z)-3-hexenyl acetate, (E)-4,8-dimethyl-1,3,7-nonatriene (DMNT), methyl salicylate, and (E,E)-4,8,12-trimethyl-1,3,7,11-tridecatetraene (TMTT), which were produced in larger amounts from A. gossypii infested plants compared to uninfested plants. In behavioral tests, A. gossypii spent significantly more time in the control (solvent) arms when presented with a synthetic blend of these four compounds, with and without the presence of VOCs from uninfested cotton. Coupled GC-electroantennogram (EAG) recordings with the lacewing C. lucasina showed significant antennal responses to VOCs from A. gossypii infested cotton, suggesting they have a role in indirect defense and indicating a likely behavioral role for these compounds for the predator as well as the aphid.

  14. The damaging effects of nitrogen ion beam implantation on upland cotton ( Gossypium hirsutum L.) pollen grains

    Science.gov (United States)

    Yu, Yanjie; Wu, Lijun; Wu, Yuejin; Wang, Qingya; Tang, Canming

    2008-09-01

    With the aim to study the effects of an ion beam on plant cells, upland cotton (Gossypium hirsutum L.) cultivar "Sumian 22" pollen grains were irradiated in vacuum (7.8 × 10-3 Pa) by low-energy nitrogen ions with an energy of 20 keV at various fluences ranging from 0.26 × 1016 to 0.78 × 1016 N+/cm2. The irradiation effects on pollen grains were tested, considering the ultrastructural changes in the exine and interior walls of pollen grains, their germination rate, the growth speed of the pollen tubes in the style, fertilization and boll development after the pistils were pollinated by the pollen grains which had been implanted with nitrogen ions. Nitrogen ions entered the pollen grains by etching and penetrating the exine and interior walls and destroying cell structures. A greater percentage of the pollen grains were destroyed as the fluence of N+ ions increased. Obviously, the nitrogen ion beam penetrated the exine and interior walls of the pollen grains and produced holes of different sizes. As the ion fluence increased, the amount and the density of pollen grain inclusions decreased and the size of the lacuna and starch granules increased. Pollen grain germination rates decreased with increasing ion fluence. The number of pollen tubes in the style declined with increased ion implantation into pollen grains, but the growth speed of the tubes did not change. All of the pollen tubes reached the end of the style at 13 h after pollination. This result was consistent with that of the control. Also, the weight and the diameter of the ovary decreased and shortened with increased ion beam implantation fluence. No evident change in the fecundation time of the ovule was observed. These results indicate that nitrogen ions can enter pollen grains and cause a series of biological changes in pollen grains of upland cotton.

  15. Analyses of Fusarium wilt race 3 resistance in Upland cotton (Gossypium hirsutum L.).

    Science.gov (United States)

    Abdullaev, Alisher A; Salakhutdinov, Ilkhom B; Egamberdiev, Sharof Sh; Kuryazov, Zarif; Glukhova, Ludmila A; Adilova, Azoda T; Rizaeva, Sofiya M; Ulloa, Mauricio; Abdurakhmonov, Ibrokhim Y

    2015-06-01

    Fusarium wilt [Fusarium oxysporum f.sp. vasinfectum (FOV) Atk. Sny & Hans] represents a serious threat to cotton (Gossypium spp.) production. For the last few decades, the FOV pathogen has become a significant problem in Uzbekistan causing severe wilt disease and yield losses of G. hirsutum L. cultivars. We present the first genetic analyses of FOV race 3 resistance on Uzbek Cotton Germplasm with a series of field and greenhouse artificial inoculation-evaluations and inheritance studies. The field experiments were conducted in two different sites: the experimental station in Zangiota region-Environment (Env) 1 and the Institute of Cotton Breeding (Env-2, Tashkent province). The Env-1 was known to be free of FOV while the Env-2 was known to be a heavily FOV infested soil. In both (Env-1 and Env-2) of these sites, field soil was inoculated with FOV race 3. F2 and an F3 Upland populations ("Mebane B1" × "11970") were observed with a large phenotypic variance for plant survival and FOV disease severity within populations and among control or check Upland accessions. Wilt symptoms among studied F2 individuals and F3 families significantly differed depending on test type and evaluation site. Distribution of Mendelian rations of susceptible (S) and resistant (R) phenotypes were 1S:1R field Env-1 and 3S:1R field Env-2 in the F2 population, and 1S:3R greenhouse site in the F3 population. The different segregation distribution of the Uzbek populations may be explained by differences in FOV inoculum level and environmental conditions during assays. However, genetic analysis indicated a recessive single gene action under high inoculum levels or disease pressure for FOV race 3 resistance. Uzbek germplasm may be more susceptible than expected to FOV race 3, and sources of resistance to FOV may be limited under the FOV inoculum levels present in highly-infested fields making the breeding process more complex.

  16. Spatial and temporal variation in fungal endophyte communities isolated from cultivated cotton (Gossypium hirsutum.

    Directory of Open Access Journals (Sweden)

    María J Ek-Ramos

    Full Text Available Studies of fungi in upland cotton (Gossypium hirsutum cultivated in the United States have largely focused on monitoring and controlling plant pathogens. Given increasing interest in asymptomatic fungal endophytes as potential biological control agents, surveys are needed to better characterize their diversity, distribution patterns and possible applications in integrated pest management. We sampled multiple varieties of cotton in Texas, USA and tested for temporal and spatial variation in fungal endophyte diversity and community composition, as well as for differences associated with organic and conventional farming practices. Fungal isolates were identified by morphological and DNA identification methods. We found members of the genera Alternaria, Colletotrichum and Phomopsis, previously isolated as endophytes from other plant species. Other recovered species such as Drechslerella dactyloides (formerly Arthrobotrys dactyloides and Exserohilum rostratum have not, to our knowledge, been previously reported as endophytes in cotton. We also isolated many latent pathogens, but some species such as Alternaria tennuissima, Epicoccum nigrum, Acremonium alternatum, Cladosporium cladosporioides, Chaetomium globosum and Paecilomyces sp., are known to be antagonists against plant pathogens, insects and nematode pests. We found no differences in endophyte species richness or diversity among different cotton varieties, but did detect differences over time and in different plant tissues. No consistent patterns of community similarity associated with variety, region, farming practice, time of the season or tissue type were observed regardless of the ecological community similarity measurements used. Results indicated that local fungal endophyte communities may be affected by both time of the year and plant tissue, but the specific community composition varies across sites. In addition to providing insights into fungal endophyte community structure, our survey

  17. Spatial and temporal variation in fungal endophyte communities isolated from cultivated cotton (Gossypium hirsutum).

    Science.gov (United States)

    Ek-Ramos, María J; Zhou, Wenqing; Valencia, César U; Antwi, Josephine B; Kalns, Lauren L; Morgan, Gaylon D; Kerns, David L; Sword, Gregory A

    2013-01-01

    Studies of fungi in upland cotton (Gossypium hirsutum) cultivated in the United States have largely focused on monitoring and controlling plant pathogens. Given increasing interest in asymptomatic fungal endophytes as potential biological control agents, surveys are needed to better characterize their diversity, distribution patterns and possible applications in integrated pest management. We sampled multiple varieties of cotton in Texas, USA and tested for temporal and spatial variation in fungal endophyte diversity and community composition, as well as for differences associated with organic and conventional farming practices. Fungal isolates were identified by morphological and DNA identification methods. We found members of the genera Alternaria, Colletotrichum and Phomopsis, previously isolated as endophytes from other plant species. Other recovered species such as Drechslerella dactyloides (formerly Arthrobotrys dactyloides) and Exserohilum rostratum have not, to our knowledge, been previously reported as endophytes in cotton. We also isolated many latent pathogens, but some species such as Alternaria tennuissima, Epicoccum nigrum, Acremonium alternatum, Cladosporium cladosporioides, Chaetomium globosum and Paecilomyces sp., are known to be antagonists against plant pathogens, insects and nematode pests. We found no differences in endophyte species richness or diversity among different cotton varieties, but did detect differences over time and in different plant tissues. No consistent patterns of community similarity associated with variety, region, farming practice, time of the season or tissue type were observed regardless of the ecological community similarity measurements used. Results indicated that local fungal endophyte communities may be affected by both time of the year and plant tissue, but the specific community composition varies across sites. In addition to providing insights into fungal endophyte community structure, our survey provides

  18. Influência do citoplasma na determinação da posição do fruto em Gossypium hirsutum L Cytoplasmic influence on the determination of fruit position in Gossypium hirsutum

    Directory of Open Access Journals (Sweden)

    Imre Lajos Gridi-Papp

    1968-01-01

    Full Text Available Um estudo genético do caráter "fruto pendente" em algodoeiros da espécie alotetraplóide Gossypium hirsutum revelou que êle é determinado pela ação de dois pares de fatores Ph e Pr, provenientes respectivamente das espécies diplóides ancestrais G. herbacenme G. raimondii.Os dados conduziram à conclusão de que existe uma interação entre cromossomos e citoplasma complicando a segregação nas populações híbridas obtidas com formas de fruto ereto. As fórmulas À, PhPhPrPr, e (0, phphprpr, são propostas para as formas de capulhos pendentes e eretos, respectivamente, c um mecanismo citogenético é sugerido para explicar o fenômeno.A genetic study of the "pendent fruit" character, carried out on varieties of the tetraploid species Gossypium hirsutum,revealed that its inheritance is determined by two pairs of factors, which came from the ancestors G. herbaceumand G. raimondii.Segregating hybrid populations obtained with "erect fruit" varieties showed that there is an interaction between chromosomes and cytoplasm interfering in the phenomenon. The quality of the cytoplasm in the "pendent fruit" phenotype was designated by À.The formulae PhPh and prpr are proposed for the ancestors G. herbaceumand G. raimondii,À, PhPhPrPr and (0, phphprpr for the pendent and erect fruit types of G. hirsutum,respectively. A cytogenetic mechanism is suggested to explain the inheritance of the character.

  19. Constitutively overexpressing a tomato fructokinase gene (lefrk1) in cotton (Gossypium hirsutum L. cv. coker 312) positively affects plant vegetative growth, boll number and seed cotton yield.

    Science.gov (United States)

    Increasing fructokinase (FRK) activity in cotton (Gossypium hirsutum L.) plants may reduce fructose inhibition of sucrose synthase (Sus) and lead to improved fibre yield and quality. Cotton was transformed with a tomato (Solanum lycopersicum L.) fructokinase gene (LeFRK1) under the control of the C...

  20. The GhTT2_A07 gene is linked to the brown colour and natural flame retardancy phenotypes of Lc1 cotton (Gossypium hirsutum L.) fibres

    Science.gov (United States)

    Some naturally-coloured brown cotton fibres from accessions of Gossypium hirsutum can be used to make textiles with enhanced flame retardancy (FR). Several independent brown fibre loci have been identified and mapped to chromosomes, but the underlying genes have yet to be identified, and the mechan...

  1. 陆地棉抗虫遗传工程%Genetic Engineering of Cotton (Gossypium hirsutum L. ) for Insect-resistance

    Institute of Scientific and Technical Information of China (English)

    Shengwei ZHU; Jingsan SUN; Yinchuan TIAN

    2002-01-01

    @@ In order to improve insect-resistance of cotton and cultivate new cotton varieties ,tissue culture and plant regeneration of cotton (Gossypium hirsutum L. ) were studied with Xinluzao 4,Xi 550,Jizi 492,Hengwu 89-30,Han 93-2 and Jizi 123 . A system of cotton tissue culture for rapid plant regeneration was developed.

  2. UJI KETAHANAN BEBERAPA GALUR KAPAS (Gossypium hirsutum HASIL RADIASI TERHADAP SERANGGA HAMA PENGGEREK BUAH Helicoverpa armigera(Hǖbner

    Directory of Open Access Journals (Sweden)

    Dwi Sunarto

    2015-09-01

    Full Text Available Uji  ketahanan beberapa galur kapas (Gossypium hirsutum terhadap  penggerek buah Helicoverpa armigera (Hǖbner dilaksanakan di laboratorium Entomologi Balai Penelitian Tanaman Pemanis dan Serat Malang pada bulan Januari sampai dengan Mei 2011. Penelitian bertujuan untuk mengevaluasi ketahanan beberapa galur kapas hasil radiasi terhadap penggerek buah H. armigera.  Perlakuan disusun menggunakan Rancangan Acak Kelompok (RAK yang terdiri atas empat galur hasil radiasi yaitu galur IA, 2A, 4A, dan 2C, dua varietas hasil radiasi yaitu Karisma, NIAB, dan dua varietas hasil pemuliaan konvensional yaitu Kanesia 10 dan Kanesia 15.  Setiap perlakuan diulang 3 kali.  Pengujian dilakukan dengan cara uji pakan (feeding assay daun, kuncup daun, dan buah muda sesuai dengan perkembangan larva H. armigera.  Larva instar I, instar II-III, dan instar IV-V berturut-turut diberikan daun muda, kuncup bunga, dan buah muda. Hasil penelitian menunjukkan bahwa galur kapas nomor 1A, 2A, 4A, dan 4C merupakan galur yang toleran terhadap H. armigera.  Kata kunci : Gossypium hirsutum, Helicoverpa armigera,   ketahanan  varietas.

  3. Fine mapping of the red plant gene R1 in upland cotton(Gossypium hirsutum)

    Institute of Scientific and Technical Information of China (English)

    ZHAO Liang; CAI CaiPing; ZHANG TianZhen; GUO WangZhen

    2009-01-01

    Sub 16 is a substitution line with G. hirsutum cv. TM-1 genetic background except that the 16th chro-mosome (Chr. 16) is replaced by the corresponding homozygous chromosome of G. barbadense cv. 3-79, and T586 is a G. hirsutum multiple gene marker line with 8 dominant mutation genes. The R1 gene for anthocyanin pigmentation was tagged in Chr. 16 in T586. The objective of this research was to screen SSR markers tightly linked with R1 by using the F2 segregating population containing 1259 plants derived from the cross of Sub 16 and T586 and the backbone genetic linkage map from G. hir-sutumxG, barbadense BC1 newly updated by our laboratory. Genetic analysis suggested that the se-gregation ratio of red plants in the F2 population fit Mendelian 1:2:1 inheritance, confirming that the red plant trait was controlled by an incomplete dominance gene. Preliminary mapping of R1 was conducted using 237 randomLy selected F2 individuals and JoinMap v3.0 software. Then, a fine map of R1 was constructed using the F2 segregating population containing 1259 plants, and R1 was located between NAU4956 and NAU6752, with only 0.49 cM to the nearest maker loci (NAU6752). These results pro-vided a foundation for map-based cloning of R1 and further development of cotton cultivars with red fibers by transgenic technology.

  4. Genotype and Planting Density Effects on Rooting Traits and Yield in Cotton (Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    Li-Zhen Zhang; Bao-Guo Li; Gen-Tu Yan; Wopke van der Werf; JHJ Spiertz; Si-Ping Zhang

    2006-01-01

    Root density distribution of plants is a major indicator of competition between plants and determines resource capture from the soil. This experiment was conducted in 2005 at Anyang, located in the Yellow River region, Henan Province, China. Three cotton (Gossypium hirsutum L.) cultivars were chosen: hybrid Bt-cultivar CRI46, conventional Bt-cultivars CRI44 and CRI45. Six planting densities were designed, ranging from 1.5 to 12.0 plants/m2. Root parameters such as surface area, diameter and length were analyzed by using the DT-SCAN image analysis method. The root length density (RLD), root average diameter and root area index (RAI), root surface area per unit land area, were studied. The results showed that RLD and RAI differed between genotypes; hybrid CRI46 had significantly higher (P < 0.05) RLD and RAI values than conventional cultivars, especially under low planting densities, less than 3.0 plants/m2. The root area index (RAI) of hybrid CRI46 was 61% higher than of CRI44 and CRI45 at the flowering stage. The RLD and RAI were also significantly different (P= 0.000) between planting densities. The depth distribution of RAI showed that at increasing planting densities RAI was increasingly distributed in the soil layers below 50 cm. The RAI of hybrid CRI46 was for all planting densities, obviously higher than other cultivars during the flowering and boll stages. It was concluded that the hybrid had a strong advantage in root maintenance preventing premature senescence of roots. The root diameter of hybrid CRI46 had a genetically higher root diameter at planting densities lower than 6.0 plants/m2. Good associations were found between yield and RAI in different stages. The optimum planting density ranged from 4.50 plants/m2 to 6.75 plants/m2 for conventional cultivars and around 4.0-5.0 plants/m2 for hybrids.

  5. Effect of Different Hormone Combinations on Somatic Embryogenesis in Cotton Cultivar Xinluzao 33(Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    Panpan MA; Zongming XIE; Quansheng LI; Yousheng TIAN; Youzhong LI

    2015-01-01

    Objective] This study was conducted to evaluate the efficiency of somatic embryogenesis and plant regeneration for an upland cotton cultivar Xinluzao33 under the induction of different hormone combinations and thus to determine the optimal hormone combination. [Method] Cal i of Xinluzao33 (Gossypium hirsutum L.) were in-duced from seedling hypocotyl tissue by a range of DK and BK combinations. Em-bryogenic cal i and embryos were induced on cal us-inducing medium (CIM) without any hormones. Cal us appearance and quality were compared to determine which medium was the optimal for cal us induction. Embryogenesis ratio was calculated to determine which medium was the best for somatic embryogenesis and plant regen-eration. [Result] Cal us induction rate was 100% in al the 12 hormone combinations. The cal i were yel ow or kel y, and their texture was loose or soft under low con-centrations of DK combinations, green or white, variably compact under high con-centrations of DK combinations. The cal i induced by BK combinations were kel y or green, covering creamy white substance. The best medium for cal us induction was DK6 (0.05 mg/L 2, 4-D and 0.10 mg/L KT). Embryogenic cal i were successful y in-duced from al the combinations. The efficiency of embryogenic cal us induction, embryogenesis, and plantlet regeneration were significantly different among the 12 combinations. The result showed that the embryogenesis ratio was the highest in BK3 combination (0.50 mg/L IBA and 0.50 mg/L KT), 72.86% of embryogenic cal i differentiated into somatic embryos after being cultured on CIM for 80 d, and 80.93% of the somatic embryos final y regenerated into plants on SEM (somatic em-bryo induction medium). [Conclusion] These results indicate that hormone combina-tion BK3 (0.50 mg/LIBA and 0.50 mg/L KT) was the best medium for somatic em-bryogenesis and plant regeneration from Xinluzao33.

  6. Differential Cotton leaf crumple virus-VIGS-mediated gene silencing and viral genome localization in different Gossypium hirsutum genetic backgrounds

    KAUST Repository

    Idris, Ali

    2010-12-01

    A Cotton leaf crumple virus (CLCrV)-based gene silencing vector containing a fragment of the Gossypium hirsutum Magnesium chelatase subunit I was used to establish endogenous gene silencing in cotton of varied genetic backgrounds. Biolistic inoculation resulted in systemic and persistent photo-bleaching of the leaves and bolls of the seven cultivars tested, however, the intensity of silencing was variable. CLCrV-VIGS-mediated expression of green fluorescent protein was used to monitor the in planta distribution of the vector, indicating successful phloem invasion in all cultivars tested. Acala SJ-1, one of the cotton cultivars, was identified as a particularly optimal candidate for CLCrV-VIGS-based cotton reverse-genetics. © 2010 Elsevier Ltd.

  7. Effect of ecological management of weed control on economical income, yield and yield components of cotton (Gossypium hirsutum L.

    Directory of Open Access Journals (Sweden)

    A. Zare Feizabadi

    2016-04-01

    Full Text Available In order to compare of ecological management of weed control on economical income, yield and yield components of cotton (Gossypium hirsutum L., a Randomized Complete Block design with 12 treatments and four replications was conducted in Mahvelat of Khorasan Razavi province, Iran. Treatments consisted of weeding, harrowing, burning, two times weeding, weeding + harrowing, weeding + burning, harrowing + harrowing, harrowing + weeding, harrowing + burning, weeding+ harrowing+ burning, weed free and weedy as a check treatment. Investigated traits were plant height, number of boll in plant, 20 boll weight, 20 boll cotton lint weight, cotton lint yield per plant, cotton yield, number and biomass of weeds, outcome, net and gross income. The result showed that treatments had significant effect (p

  8. Transcriptome Analysis of Cotton (Gossypium hirsutum L. Genotypes That Are Susceptible, Resistant, and Hypersensitive to Reniform Nematode (Rotylenchulus reniformis.

    Directory of Open Access Journals (Sweden)

    Ruijuan Li

    Full Text Available Reniform nematode is a semi-endoparasitic nematode species causing significant yield loss in numerous crops, including cotton (Gossypium hirsutum L.. An RNA-sequencing analysis was conducted to measure transcript abundance in reniform nematode susceptible (DP90 & SG747, resistant (BARBREN-713, and hypersensitive (LONREN-1 genotypes of cotton (Gossypium hirsutum L. with and without reniform nematode infestation. Over 90 million trimmed high quality reads were assembled into 84,711 and 80, 353 transcripts using the G. arboreum and the G. raimondii genomes as references. Many transcripts were significantly differentially expressed between the three different genotypes both prior to and during nematode pathogenesis, including transcripts corresponding to the gene ontology categories of cell wall, hormone metabolism and signaling, redox reactions, secondary metabolism, transcriptional regulation, stress responses, and signaling. Further analysis revealed that a number of these differentially expressed transcripts mapped to the G. raimondii and/or the G. arboreum genomes within 1 megabase of quantitative trait loci that had previously been linked to reniform nematode resistance. Several resistance genes encoding proteins known to be strongly linked to pathogen perception and resistance, including LRR-like and NBS-LRR domain-containing proteins, were among the differentially expressed transcripts mapping near these quantitative trait loci. Further investigation is required to confirm a role for these transcripts in reniform nematode susceptibility, hypersensitivity, and/or resistance. This study presents the first systemic investigation of reniform nematode resistance-associated genes using different genotypes of cotton. The candidate reniform nematode resistance-associated genes identified in this study can serve as the basis for further functional analysis and aid in further development of reniform a nematode resistant cotton germplasm.

  9. Genetic studies of quantitative traits in interspecific hybrids of tetraploid cotton (Gossypium hirsutum L. X Gossypium barbadense L.

    Directory of Open Access Journals (Sweden)

    B. N. Patel, N. A. Patel, N. V. Soni and V. D. Dave

    2014-12-01

    Full Text Available Forty five inter specific hybrids between tetraploid species, G. hirsutum x G. barbadense derived involving nine diverse female parents of G.hirsutum and five pollen parents of G.barbadense were evaluated to study heterosis and combining ability for seed cotton yield and other characters viz., days to 50% flowering, number of monopodia/plant, number of sympodia/plant, seed index, lint index and oil content. The hybrid G. 67 x GSB 19 exhibited positively significant standard heterosis for seed cotton yield/plant, seed and lint index. Combining ability analysis suggested preponderance of non-additive gene action for all the characters under study except for days to 50% flowering. The female parent,G. 67 and male parent GSB 19 depicted positive significant gca effects for seed cotton yield/plant, seed and lint index; while, hybrid G. 247 x Suvin had significant positive sca effects for seed cotton yield/plant, number of monopodia/plant, number of sympodia/plant and oil content.

  10. Exp2 polymorphisms associated with variation for fiber quality properties in cotton (Gossypium spp.

    Directory of Open Access Journals (Sweden)

    Daohua He

    2014-10-01

    Full Text Available Plant expansins are a group of extracellular proteins thought to affect the quality of cotton fibers. Previous expression profile analysis revealed that six Expansin A genes are present in cotton, of which two (GhExp1 and GhExp2 produce transcripts that are specific to the developing cotton fiber. To identify the phenotypic function of Exp2, and to determine whether nucleotide variation among alleles of Exp2 affects fiber quality, candidate gene association mapping was conducted. Gene-specific primers were designed to amplify the Exp2 gene. By amplicon sequencing, the nucleotide diversity of Exp2 was investigated across 92 accessions (including 7 Gossypium arboreum, 74 Gossypium hirsutum, and 11 Gossypium barbadense accessions with different fiber qualities. Twenty-six SNPs and seven InDels including 14 from the coding region of Exp2 were detected, forming twelve distinct haplotypes in the cotton collection. Among the 14 SNPs in the coding region, five were missense mutations and nine were synonymous nucleotide changes. The average SNP/InDel per nucleotide ratio was 2.61% (one SNP per 39 bp, with 1.81 and 3.87% occurring in coding and non-coding regions, respectively. Nucleotide and haplotype diversity across the entire Exp2 region was 0.00603 (π and 0.844, respectively, and diversity in non-coding regions was higher than that in coding regions. For linkage disequilibrium (LD, the mean r2 value for all polymorphism loci pairs was 0.48, and LD did not decay over 748 bp. Based on 132 simple sequence repeat (SSR loci evenly covering 26 chromosomes, the population structure was estimated, and the accessions were divided into seven groups that agreed well with their genomic origin and evolutionary history. A general linear model was used to calculate the Exp2-wide diversity–trait associations of 5 fiber quality traits, considering population structure (Q. Four SNPs in Exp2 were associated with at least one of the fiber quality traits, but not with

  11. Regulation of auxin on secondary cell wall cellulose biosynthesis in developing cotton fibers

    Science.gov (United States)

    Cotton (Gossypium hirsutum L.) fibers are unicellular trichomes that differentiate from epidermal cells of developing cotton ovules. Mature fibers exhibit thickened secondary walls composed of nearly pure cellulose. Cotton fiber development is divided into four overlapping phases, 1) initiation sta...

  12. Improvement of copper tolerance of Arabidopsis by transgenic expression of an allene oxide cyclase gene, GhAOC1, in upland cotton (Gossypium hirsutum L.

    Directory of Open Access Journals (Sweden)

    Yuange Wang

    2015-08-01

    Full Text Available Allene oxide cyclase (AOC, E 5.3.99.6 is an essential enzyme in the jasmonic acid (JA biosynthetic pathway and mediates a wide range of adaptive responses. In this report, five AOC genes (GhAOC1–GhAOC5 were cloned from upland cotton (Gossypium hirsutum L., sequenced, and characterized. Real-time PCR analysis indicated that the transcripts of GhAOCs were abundantly expressed in roots and less in fibers, and regulated in cotton plants under methyl jasmonate (MeJA and CuCl2 stresses. To investigate the role of GhAOC under copper stress, transgenic Arabidopsis plants overexpressing cotton GhAOC1 under control of the Cauliflower mosaic virus 35S (CaMV 35S promoter were generated. Compared to untransformed plants, GhAOC1-overexpressing Arabidopsis thaliana plants exhibited markedly higher survival rate, shoot fresh weight, shoot dry weight, and photosynthetic efficiency, and reduced cell membrane damage and lipid peroxidation under copper stress. This study provides the first evidence that GhAOC1 plays an important role in copper stress tolerance.

  13. Improvement of copper tolerance of Arabidopsis by transgenic expression of an allene oxide cyclase gene,GhA OC1, in upland cotton(Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    Yuange; Wang; Huaihua; Liu; Qingguo; Xin

    2015-01-01

    Allene oxide cyclase(AOC, E 5.3.99.6) is an essential enzyme in the jasmonic acid(JA)biosynthetic pathway and mediates a wide range of adaptive responses. In this report, five AOC genes(Gh AOC1–Gh AOC5) were cloned from upland cotton(Gossypium hirsutum L.),sequenced, and characterized. Real-time PCR analysis indicated that the transcripts of Gh AOCs were abundantly expressed in roots and less in fibers, and regulated in cotton plants under methyl jasmonate(Me JA) and Cu Cl2 stresses. To investigate the role of Gh AOC under copper stress, transgenic Arabidopsis plants overexpressing cotton Gh AOC1 under control of the Cauliflower mosaic virus 35S(Ca MV 35S) promoter were generated. Compared to untransformed plants, Gh AOC1-overexpressing Arabidopsis thaliana plants exhibited markedly higher survival rate, shoot fresh weight, shoot dry weight, and photosynthetic efficiency, and reduced cell membrane damage and lipid peroxidation under copper stress.This study provides the first evidence that Gh AOC1 plays an important role in copper stress tolerance.

  14. Molecular Cloning and Characterization of Three Novel Genes Related to Fatty Acid Degradation and Their Responses to Abiotic Stresses in Gossypium hirsutum L.

    Institute of Scientific and Technical Information of China (English)

    DONG Jia; WEI Li-bin; HU Yan; GUO Wang-zhen

    2013-01-01

    Fatty acid metabolism is responsible not only for oilseed metabolism but also for plant responses to abiotic stresses. In this study, three novel genes related to fatty acid degradation designated GhACX, Gh4CL, and GhMFP, respectively, were isolated from Gossypium hirsutum acc. TM-1. The phylogenetic analysis revealed that amino acid sequences of GhACX and GhMFP have the highest homology with those from Vitis vinifera, and Gh4CL has a closer genetic relationship with that from Camellia sinensis. Tissue-and organ-specific analysis showed that the three genes expressed widely in all the tested tissues, including ovules and fiber at different developing stages, with expressed preferentially in some organs. Among them, GhACX showed the most abundant transcripts in seeds at 25 d post anthesis (DPA), however, GhMFP and Gh4CL have the strongest expression level in ovules on the day of anthesis. Based on real-time quantitative RT-PCR, the three genes were differentially regulated when induced under wounding, methyl jasmonate (MeJA), cold, and abscisic acid (ABA) treatments. The characterization and expression pattern of three novel fatty acid degradation related genes will aid both to understand the roles of fatty acid degradation related genes as precursor in stress stimuli and to elucidate the physiological function in cotton oilseed metabolism.

  15. Improvement of copper tolerance of Arabidopsis by transgenic expression of an allene oxide cyclase gene, GhAOC1, in upland cotton (Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    Yuange Wang; Huaihua Liu; Qingguo Xin

    2015-01-01

    Allene oxide cyclase (AOC, E 5.3.99.6) is an essential enzyme in the jasmonic acid (JA) biosynthetic pathway and mediates a wide range of adaptive responses. In this report, five AOC genes (GhAOC1–GhAOC5) were cloned from upland cotton (Gossypium hirsutum L.), sequenced, and characterized. Real-time PCR analysis indicated that the transcripts of GhAOCs were abundantly expressed in roots and less in fibers, and regulated in cotton plants under methyl jasmonate (MeJA) and CuCl2 stresses. To investigate the role of GhAOC under copper stress, transgenic Arabidopsis plants overexpressing cotton GhAOC1 under control of the Cauliflower mosaic virus 35S (CaMV 35S) promoter were generated. Compared to untransformed plants, GhAOC1-overexpressing Arabidopsis thaliana plants exhibited markedly higher survival rate, shoot fresh weight, shoot dry weight, and photosynthetic efficiency, and reduced cell membrane damage and lipid peroxidation under copper stress. This study provides the first evidence that GhAOC1 plays an important role in copper stress tolerance.

  16. A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.

    Directory of Open Access Journals (Sweden)

    Tang Yuhong

    2011-09-01

    Full Text Available Abstract Background Cotton fiber length is an important quality attribute to the textile industry and longer fibers can be more efficiently spun into yarns to produce superior fabrics. There is typically a negative correlation between yield and fiber quality traits such as length. An understanding of the regulatory mechanisms controlling fiber length can potentially provide a valuable tool for cotton breeders to improve fiber length while maintaining high yields. The cotton (Gossypium hirsutum L. fiber mutation Ligon lintless-2 is controlled by a single dominant gene (Li2 that results in significantly shorter fibers than a wild-type. In a near-isogenic state with a wild-type cotton line, Li2 is a model system with which to study fiber elongation. Results Two near-isogenic lines of Ligon lintless-2 (Li2 cotton, one mutant and one wild-type, were developed through five generations of backcrosses (BC5. An F2 population was developed from a cross between the two Li2 near-isogenic lines and used to develop a linkage map of the Li2 locus on chromosome 18. Five simple sequence repeat (SSR markers were closely mapped around the Li2 locus region with two of the markers flanking the Li2 locus at 0.87 and 0.52 centimorgan. No apparent differences in fiber initiation and early fiber elongation were observed between the mutant ovules and the wild-type ones. Gene expression profiling using microarrays suggested roles of reactive oxygen species (ROS homeostasis and cytokinin regulation in the Li2 mutant phenotype. Microarray gene expression data led to successful identification of an EST-SSR marker (NAU3991 that displayed complete linkage to the Li2 locus. Conclusions In the field of cotton genomics, we report the first successful conversion of gene expression data into an SSR marker that is associated with a genomic region harboring a gene responsible for a fiber trait. The EST-derived SSR marker NAU3991 displayed complete linkage to the Li2 locus on

  17. SELETIVIDADE DE INSETICIDAS AO COMPLEXO DE INIMIGOS NATURAIS NA CULTURA DO ALGODÃO (Gossypium hirsutum L. SELECTIVITY OF INSECTICIDES ON THE COMPLEX OF NATURAL ENEMIES IN COTTON CROP (Gossypium hirsutum L.

    Directory of Open Access Journals (Sweden)

    Fábio Shigeo Takatsuka

    2007-09-01

    Full Text Available

    Avaliou-se a seletividade de inseticidas sobre o complexo de inimigos naturais na cultura do algodão (Gossypium hirsutum L., no município de Goiânia, GO. Utilizou-se a cultivar Deltapine e o delineamento experimental em blocos ao acaso, com sete tratamentos e quatro repetições. Os tratamentos foram: testemunha, thiamethoxam (300 g.ha-1, lufenuron (300 mL.ha-1, betacyflutrin (800 mL.ha-1, imidacloprid (70 g.ha-1, diflubenzuron (6,0 g.ha-1, endosulfan (1500 mL.ha-1, em suas apresentações comerciais. A pulverização dos inseticidas foi efetuada aos 45 dias após a emergência das plantas. Além da avaliação prévia, foram efetuadas avaliações aos três e sete dias após a aplicação dos inseticidas. As amostragens foram realizadas através do método de batida de pano, com duas batidas ao acaso por parcela, identificando-se e contando-se, o número de inimigos naturais presentes. Três dias após a aplicação dos tratamentos, os inseticidas thiamethoxam (300 g.ha-1, lufenuron (300 mL.ha-1 e diflubenzuron (60 g.ha-1, considerando os produtos comerciais, não apresentaram efeito de choque sobre o complexo de inimigos naturais presentes na cultura do algodoeiro. Entretanto, aos sete dias após a aplicação, apenas o tratamento com lufenuron manteve a seletividade.a esses artrópodes predadores.

    PALAVRAS-CHAVE: Inseticida; controle biológico; Gossypium.

  18. Introgression of Gossypium klotzschianum Genome into Cultivated Cotton,G.hirsutum

    Institute of Scientific and Technical Information of China (English)

    SHEN Xin-lian; ZHANG Xiang-gui; YANG Yu-wen; CAO Zhi-bin; NI Wan-chao

    2008-01-01

    @@ Exotic Gossypium germplasm is a rich source of useful agronomic traits for improvement programs of cultivated cotton.Efficient use of genetic variation available in the wild relatives depends on the ability to identify and introgress desirable DNA segments from wild species into cultivated cotton.

  19. Measuring diversity in Gossypium hirsutum using the CottonSNP63K Array

    Science.gov (United States)

    A CottonSNP63K array and accompanying cluster file has been developed and includes 45,104 intra-specific SNPs and 17,954 inter-specific SNPs for automated genotyping of cotton (Gossypium spp.) samples. Development of the cluster file included genotyping of 1,156 samples, a subset of which were iden...

  20. Analysis of [Gossypium capitis-viridis × (G.hirsutum × G.australe)2] Trispecific Hybrid and Selected Characteristics.

    Science.gov (United States)

    Chen, Di; Wu, Yuxiang; Zhang, Xiling; Li, Fuguang

    2015-01-01

    Speciation is always a contentious and challenging issue following with the presence of gene flow. In Gossypium, there are many valuable resources and wild diploid cotton especially C and B genome species possess some excellent traits which cultivated cotton always lacks. In order to explore character transferring rule from wild cotton to upland tetraploid cotton, the [G. capitis-viridis × (G. hirsutum × G. australe)2] triple hybrid was synthesized by interspecies hybridization and chromosome doubling. Morphology comparisons were measured among this hybrid and its parents. It showed that trispecific hybrid F1 had some intermediate morphological characters like leaf style between its parents and some different characters from its parents, like crawl growth characteristics and two kind flower color. It is highly resistant to insects comparing with other cotton species by four year field investigation. By cytogenetic analysis, triple hybrid was further confirmed by meiosis behavior of pollen mother cells. Comparing with regular meiosis of its three parents, it was distinguished by the occurrence of polyads with various numbers of unbalanced microspores and finally generating various abnormal pollen grains. All this phenomenon results in the sterility of this hybrid. This hybrid was further identified by SSR marker from DNA molecular level. It showed that 98 selected polymorphism primers amplified effective bands in this hybrids and its parents. The genetic proportion of three parents in this hybrid is 47.8% from G. hirsutum, 14.3% from G. australe, 7.0% from G. capitis-viridis, and 30.9% recombination bands respectively. It was testified that wild genetic material has been transferred into cultivated cotton and this new germplasm can be incorporated into cotton breeding program.

  1. Analysis of [Gossypium capitis-viridis × (G.hirsutum × G.australe2] Trispecific Hybrid and Selected Characteristics.

    Directory of Open Access Journals (Sweden)

    Di Chen

    Full Text Available Speciation is always a contentious and challenging issue following with the presence of gene flow. In Gossypium, there are many valuable resources and wild diploid cotton especially C and B genome species possess some excellent traits which cultivated cotton always lacks. In order to explore character transferring rule from wild cotton to upland tetraploid cotton, the [G. capitis-viridis × (G. hirsutum × G. australe2] triple hybrid was synthesized by interspecies hybridization and chromosome doubling. Morphology comparisons were measured among this hybrid and its parents. It showed that trispecific hybrid F1 had some intermediate morphological characters like leaf style between its parents and some different characters from its parents, like crawl growth characteristics and two kind flower color. It is highly resistant to insects comparing with other cotton species by four year field investigation. By cytogenetic analysis, triple hybrid was further confirmed by meiosis behavior of pollen mother cells. Comparing with regular meiosis of its three parents, it was distinguished by the occurrence of polyads with various numbers of unbalanced microspores and finally generating various abnormal pollen grains. All this phenomenon results in the sterility of this hybrid. This hybrid was further identified by SSR marker from DNA molecular level. It showed that 98 selected polymorphism primers amplified effective bands in this hybrids and its parents. The genetic proportion of three parents in this hybrid is 47.8% from G. hirsutum, 14.3% from G. australe, 7.0% from G. capitis-viridis, and 30.9% recombination bands respectively. It was testified that wild genetic material has been transferred into cultivated cotton and this new germplasm can be incorporated into cotton breeding program.

  2. Development of one set of chromosome-specific microsatellite-containing BACs and their physical mapping in Gossypium hirsutum L.

    Science.gov (United States)

    Wang, Kai; Guo, Wangzhen; Zhang, Tianzhen

    2007-09-01

    Fluorescence in situ hybridization (FISH), using bacterial artificial chromosome (BAC) clone as probe, is a reliable cytological technique for chromosome identification. It has been used in many plants, especially in those containing numerous small chromosomes. We previously developed eight chromosome-specific BAC clones from tetraploid cotton, which were used as excellent cytological markers for chromosomes identification. Here, we isolated the other chromosome-specific BAC clones to make a complete set for the identification of all 26 chromosome-pairs by this technology in tetraploid cotton (Gossypium hirsutum L.). This set of BAC markers was demonstrated to be useful to assign each chromosome to a genetic linkage group unambiguously. In addition, these BAC clones also served as convenient and reliable landmarks for establishing physical linkage with unknown targeted sequences. Moreover, one BAC containing an EST, with high sequence similarity to a G. hirsutum ethylene-responsive element-binding factor was located physically on the long arm of chromosome A7 with the help of a chromosome-A7-specific BAC FISH marker. Comparative analysis of physical marker positions in the chromosomes by BAC-FISH and genetic linkage maps demonstrated that most of the 26 BAC clones were localized close to or at the ends of their respective chromosomes, and indicated that the recombination active regions of cotton chromosomes are primarily located in the distal regions. This technology also enables us to make associations between chromosomes and their genetic linkage groups and re-assign each chromosome according to the corresponding genetic linkage group. This BAC clones and BAC-FISH technology will be useful for us to evaluate grossly the degree to which a linkage map provides adequate coverage for developing a saturated genetic map, and provides a powerful resource for cotton genomic researches.

  3. Molecular cloning and function analysis of two SQUAMOSA-Like MADS-box genes from Gossypium hirsutum L.

    Science.gov (United States)

    Zhang, Wenxiang; Fan, Shuli; Pang, Chaoyou; Wei, Hengling; Ma, Jianhui; Song, Meizhen; Yu, Shuxun

    2013-07-01

    The MADS-box genes encode a large family of transcription factors having diverse roles in plant development. The SQUAMOSA (SQUA)/APETALA1 (AP1)/FRUITFULL (FUL) subfamily genes are essential regulators of floral transition and floral organ identity. Here we cloned two MADS-box genes, GhMADS22 and GhMADS23, belonging to the SQUA/AP1/FUL subgroup from Gossypium hirsutum L. Phylogenetic analysis and sequence alignment showed that GhMADS22 and GhMADS23 belonged to the euFUL and euAP1 subclades, respectively. The two genes both had eight exons and seven introns from the start codon to the stop codon according to the alignment between the obtained cDNA sequence and the Gossypium raimondii L. genome sequence. Expression profile analysis showed that GhMADS22 and GhMADS23 were highly expressed in developing shoot apices, bracts, and sepals. Gibberellic acid promoted GhMADS22 and GhMADS23 expression in the shoot apex. Transgenic Arabidopsis lines overexpressing 35S::GhMADS22 had abnormal flowers and bolted earlier than wild type under long-day conditions (16 h light/8 h dark). Moreover, GhMADS22 overexpression delayed floral organ senescence and abscission and it could also respond to abscisic acid. In summary, GhMADS22 may have functions in promoting flowering, improving resistance and delaying senescence for cotton and thus it may be a candidate target for promoting early-maturation in cotton breeding.

  4. Mosquito Larvicidal Potential of Gossypium hirsutum (Bt cotton Leaves Extracts against Aedes aegypti and Anopheles stephensi larvae.

    Directory of Open Access Journals (Sweden)

    Chandrashekhar D Patil

    2014-06-01

    Full Text Available We aimed to extract the ingredients from leaves of Gossypium hirsutum (Bt cotton using different solvents and evaluate for potential use to control different larval stages of mosquito species, Aedes aegypti and Anopheles stephensi.Qualitative and quantitative estimation of ingredients from Go. hirsutum (Bt plant extract was carried out and their inhibitory action against mosquito larvae was determined using mosquito larvicidal assay.LC50 values of water, ethanol, ethyl acetate and hexane extracts for Ae. aegypti were 211.73±21.49, 241.64±19.92, 358.07±32.43, 401.03±36.19 and 232.56±26.00, 298.54±21.78, 366.50±30.59, 387.19±31.82 for 4(th instar of An. stephensi, respectively. The water extract displayed lowest LC50 value followed by ethanol, ethyl acetate and hexane. Owing to the comparatively better activity of water extract, its efficacy was further evaluated for mosquito larvicidal activity, which exhibited LC50 values of 133.95±12.79, 167.65±11.34 against 2(nd and 3(rd instars of Ae. aegypti and 145.48±11.76, 188.10±12.92 against 2(nd and 3(rd instars of An. stephensi, respectively. Crude protein from the water extract was precipitated using acetone and tested against 2(nd, 3(rd and 4(th instars of Ae. aegypti and An. stephensi. It revealed further decrease in LC50 values as 105.72±25.84, 138.23±23.18, 126.19±25.65, 134.04±04 and 137.88±17.59, 154.25±16.98 for 2(nd, 3(rd and 4(th instars of Ae. aegypti and An. stephensi, respectively.Leaves extracts of Go. hirsutum (Bt is potential mosquito larvicide and can be used as a potent alternative to chemical insecticides in integrated pest management.

  5. Comparison of ionomic and metabolites response under alkali stress in old and young leaves of cotton (Gossypium hirsutum L. seedlings

    Directory of Open Access Journals (Sweden)

    Rui Guo

    2016-11-01

    Full Text Available Soil salinization is an important agriculture-related environmental problem. Alkali stress and salt stress strongly influence the metabolic balance in plants. Salt and alkali stresses exert varied effects on old and young tissues, which display different adaptive strategies. In this study, we used cotton (Gossypium hirsutum L. plants as experimental material to investigate whether alkali stress exerts varied effects on ion balance and metabolism in old and young leaves of cotton plants exposed to alkali stress. Moreover, we compared the functions of young and old leaves in alkali tolerance. Results showed that alkali stress exerted a considerably stronger growth inhibition on old leaves than on young leaves. Under alkali stress, young leaves can maintain low Na and high K contents and retain relatively stable pigment accumulation and tricarboxylic acid cycle (TCA, resulting in greater accumulation of photosynthetic metabolites. In terms of metabolic response, the young and old leaves clearly displayed different mechanisms of osmotic regulation. The amounts of inositol and mannose significantly increased in both old and young leaves of cotton exposed to alkali stress, and the extent of increase was higher in young leaves than in old leaves. In old leaves, synthesis of amino acids, such as GABA, valine, and serine, was dramatically enhanced, and this phenomenon is favorable for osmotic adjustment and membrane stability. Organs at different developmental stages possibly display different mechanisms of metabolic regulation under stress condition. Thus, we propose that future investigations on alkali stress should use more organs obtained at different developmental stages.

  6. QTL analysis for early-maturing traits in cotton using two upland cotton (Gossypium hirsutum L.) crosses.

    Science.gov (United States)

    Li, Chengqi; Wang, Xiaoyun; Dong, Na; Zhao, Haihong; Xia, Zhe; Wang, Rui; Converse, Richard L; Wang, Qinglian

    2013-06-01

    Making use of the markers linked closely to QTL for early-maturing traits for MAS (Marker-assisted selection) is an effective method for the simultaneous improvement of early maturity and other properties in cotton. In this study, two F2 populations and their F2:3 families were generated from the two upland cotton (Gossypium hirsutum L.) crosses, Baimian2 × TM-1 and Baimian2 × CIR12. QTL for early-maturing traits were analyzed using F2:3 families. A total of 54 QTL (31 suggestive and 23 significant) were detected. Fourteen significant QTL had the LOD scores not only > 3 but also exceeding permutation threshold. At least four common QTL, qBP-17 for bud period (BP), qGP-17a/qGP-17b (qGP-17) for growth period (GP), qYPBF-17a/qYPBF-17b (qYPBF-17) for yield percentage before frost (YPBF) and qHFFBN-17 for height of first fruiting branch node (HFFBN), were found in both populations. These common QTL should be reliable and could be used for MAS to facilitate early maturity. The common QTL, qBP-17, had a LOD score not only > 3 but also exceeding permutation threshold, explaining 12.6% of the phenotypic variation. This QTL should be considered preferentially in MAS. Early-maturing traits of cotton are primarily controlled by dominant and over-dominant effects.

  7. Salt-induced effects on some key morpho-physiological attributes of cotton (Gossypium hirsutum L. at various growth stages

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    Huma Lubna Shaheen and Muhammad Shahbaz

    2012-11-01

    Full Text Available Salinity is a multidimensional stress affecting crop yield and productivity at various levels of plant organization. To assess salt induced adverse effects on cotton (Gossypium hirsutum L., ten cultivars were grown in sand culture supplemented with full strength Hoagland’s nutrients solutions and different salt concentrations (0, 50, 100 and 200 mM NaCl. Salt stress markedly reduced growth attributes, relative water contents, efficiency of photosystem II, net CO2 assimilation rate (A, transpiration rate (E and stomatal conductance in all cultivars. Reduction was maximum at the highest level of salt stress i.e. 200 mM. However, response of cotton cultivars was variable to various levels of salinity and even at various developmental stages. Cultivars RH-510, BH-118 and MNH-770 were ranked as relatively salt tolerant on the basis of their better growth performance and net CO2 assimilation rate whereas cvs. CIM-496, CIM-473 and FH-901 were relatively salt sensitive. Cultivars RH-510, BH-118 and MNH-770 exhibited high shoot fresh and dry weights, photosynthetic rate (A, and Photosystem II (Fv/Fm efficiency at both seedling and maturity growth stages. Results suggest that selection of plants having high photosynthetic rate and biomass at seedling stage may be a good source of high yield at mature stage of growth.

  8. Overexpression of GhDof1 improved salt and cold tolerance and seed oil content in Gossypium hirsutum.

    Science.gov (United States)

    Su, Ying; Liang, Wei; Liu, Zhengjie; Wang, Yumei; Zhao, Yanpeng; Ijaz, Babar; Hua, Jinping

    2017-07-28

    A homologous GhDof1, which belongs to a large family of plant-specific transcription factor DOF, was isolated from Upland cotton (Gossypium hirsutum L.). GhDof1 protein was located in the nucleus of onion epidermal cells, the core domain of transcriptional activity existed in the C-terminal, and the activity elements of GhDof1 promoter existed in the regions of -645∼ -469bp and -286∼ -132bp of transcriptional start codon. GhDof1 constitutively expressed in leaves, roots and stems, accumulated highest in leaves. The salinity and cold treatments induced GhDof1 transcript accumulation. The GhDof1-overexpressed cotton showed significantly higher salt and cold tolerance over the wild-type plants. Under salt stress, the root growth of overexpressed GhDof1 lines was promoted. The expression levels of stress-responsive genes, GhP5CS, GhSOD and GhMYB, were differently up-regulated in transgenic lines. Oil contents increased in some transgenic plants, and protein contents reduced compared with transformed receptor. These results suggested that GhDof1 was a functional transcription factor for improving the abiotic tolerance and seed oil content in Upland cotton. Copyright © 2017 Elsevier GmbH. All rights reserved.

  9. Plant tissue culture independent Agrobacterium tumefaciens mediated In-planta transformation strategy for upland cotton (Gossypium hirsutum

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    Bipinchandra B. Kalbande

    2016-06-01

    Full Text Available A new method of transgenic development called “In-planta” transformation method, where Agrobacterium is used to infect the plantlets but the steps of in vitro regeneration of plants is totally avoided. In this study, we have reported a simple In-planta method for efficient transformation of diploid cotton Gossypium hirsutum cv LRK-516 Anjali using Agrobacterium tumefaciens EHA-105 harbouring recombinant binary vector plasmid pBinAR with Arabidopsis At-NPR1 gene. Four day old plantlets were used for transformation. A vertical cut was made at the junction of cotyledonary leaves, moderately bisecting the shoot tip and exposing meristem cells at apical meristem. This site was infected with Agrobacterium inoculum. The transgenic events obtained were tested positive for the presence of At-NPR1 gene with promoter nptII gene. They are also tested negative for vector backbone integration and Agrobacterium contamination in T0 events. With this method a transformation frequency of 6.89% was reported for the cv LRK-516.

  10. Genetic structure, linkage disequilibrium and association mapping of Verticillium wilt resistance in elite cotton (Gossypium hirsutum L.) germplasm population.

    Science.gov (United States)

    Zhao, Yunlei; Wang, Hongmei; Chen, Wei; Li, Yunhai

    2014-01-01

    Understanding the population structure and linkage disequilibrium in an association panel can effectively avoid spurious associations and improve the accuracy in association mapping. In this study, one hundred and fifty eight elite cotton (Gossypium hirsutum L.) germplasm from all over the world, which were genotyped with 212 whole genome-wide marker loci and phenotyped with an disease nursery and greenhouse screening method, were assayed for population structure, linkage disequilibrium, and association mapping of Verticillium wilt resistance. A total of 480 alleles ranging from 2 to 4 per locus were identified from all collections. Model-based analysis identified two groups (G1 and G2) and seven subgroups (G1a-c, G2a-d), and differentiation analysis showed that subgroup having a single origin or pedigree was apt to differentiate with those having a mixed origin. Only 8.12% linked marker pairs showed significant LD (Pmapping, which widely were distributed among 15 chromosomes. Among which 10 marker loci were found to be consistent with previously identified QTLs and 32 were new unreported marker loci, and QTL clusters for Verticillium wilt resistanc on Chr.16 were also proved in our study, which was consistent with the strong linkage in this chromosome. Our results would contribute to association mapping and supply the marker candidates for marker-assisted selection of Verticillium wilt resistance in cotton.

  11. Controle de plantas daninhas com cyanazine aplicado em mistura com outros herbicidas, na cultura do algodão (Gossypium hirsutum L. Weed control in cotton (Gossypium hirsutum L. with cyanazine and other herbicides

    Directory of Open Access Journals (Sweden)

    Julio Pedro Laca-Buendia

    1985-12-01

    Full Text Available Com a finalidade de estudar a mistura de tanque mais eficiente com cyanazine em aplicação de pré-emergência na cultura algodoeira (Gossypium hirsutum L. , foram estudados os seguintes tratamentos: cyanazine + diuron nas doses de 0,8 + 0,8 kg i.a/ha e 1,0 + 1,0 kg i.a/ha; cyanazine+ oryzalin , nas do sés de 1,2 + 0,8 kg i.a/ha e 1,6 + 1,2 kg i.a/h a; cyanazyne + metol a chlor, nas doses de 1,4 + 2,0 kg i.a/ha e 1,75 + 2,52 kg i.a/ ha;cianazine na dose de 1,75 kg i.a /ha; oryzalin na dose de 1,12 kg i.a/ha; metol achlor na dose de 2,52 kg i.a /ha e diuron na dose de 1,6 kg i.a /ha. Para efeito de comparação, utilizou-se uma testemunha sem capina e outra com capina manual. Nenhum tratamento apresentou injúria para as plantas de algodão e não houve diferenças significativas para o "stand" inicial. Já no "stand" final, a testemunha sem capina apresentou o menor número de plantas, sendo que não houve diferenças significativas dos outros tratamentos com a testemunha capinada. Para o rendimento, a mistura cyanazine + metolachior em ambas as doses estudadas, não apresentaram diferenças significativas da testemunha capinada. Quanto à altura da planta, peso de 100 sementes, porcentagem e índice de fibras não houve diferenças significativas entre os tratamentos estudados, somente o peso do capulho foi afetado pelo oryzalin. Pela avaliação visual (EWRC 1 a 9*, os herbicidas apres entaram um controle satisfatório somente até os 30 dias após aplicação, sendo que a mistura cyanazine + metolachlor foi efici ente quanto a testemunha capinada. No controle da Portulaca oleracea , a mistura cyanazine + oryzalin na maior dose e oryzalin apresentaram 71,4% de controle ate os 30 dias e 79,4% e 82,4%, respectivamente, até 45 dias da aplicação. Para Amaranthus sp., à exceção da cyanazine e cyanazine + diuron nas doses menores, não apresentaram nenhum controle, sendo que os outros herbicidas controlaram com eficiência superior a 70

  12. Isolation, characterization and mapping of genes differentially expressed during fibre development between Gossypium hirsutum and G. barbadense by cDNA-SRAP

    Indian Academy of Sciences (India)

    Chuanxiang Liu; Daojun Yuan; Xianlong Zhang; Zhongxu Lin

    2013-08-01

    Gossypium hirsutum and G. barbadense are two cultivated tetraploid cotton species with differences in fibre quality. The fibre of G. barbadense is longer, stronger and finer than that of G. hirsutum. To isolate genes expressed differently between the two species during fibre development, cDNA-SRAP (sequence-related amplified polymorphism) was applied. This technique was used to analyse genes at different stages of fibre development in G. hirsutum cv. Emian22 and G. barbadense acc. 3-79, the parents of our interspecific mapping population. A total of 4096 SRAP primer combinations were used to screen polymorphism between the DNA of the parents, and 275 highly polymorphic primers were picked out to analyse DNA and RNA from leaves and fibres at different developmental stages of the parents. A total of 168 DNA fragments were isolated from gels and sequenced: 54, 30, 38 and 41 from fibres of 5, 10, 15 and 20 days post-anthesis, respectively, and five from multi stages. To genetically map these sequences, 104 sequence-specific primers were developed and were used to screened polymorphism between the mapping parents. Finally, six markers were mapped on six chromosomes of our backbone interspecific genetic map. This work can give us a primary knowledge of differences in mechanism of fibre development between G. hirsutum and G. barbadense.

  13. RAPD and SCAR Markers for Dominant Glandless Gene in Gossypium hirsutum L.%陆地棉显性无腺体基因的RAPD和SCAR标记

    Institute of Scientific and Technical Information of China (English)

    Xiao-yan JIANG; Kun-bo WANG; Guo-li SONG; Wen-sheng ZHANG; Rong-xia CUI

    2002-01-01

    @@ Glandless or gossypol free cottons are of great value to develop the utilizations of cottonseeds and cotton scientists have been interested in developing more applicable glandless cultivars.Common glandless cotton are generated by recessive genes, such as gl2 and gl3. A dominant glandless mutant has been discovered in Egyptian cotton (Gossypium barbadense L. )The gene was transformed into G. hirsutum and was proved as dominant single gene Gl2e( Xian-he Zhan, 1987 ), being attractive for many genetists and breeders to pay more attention to study on it including its genetic markers.

  14. Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm.

    Science.gov (United States)

    Abdurakhmonov, I Y; Kohel, R J; Yu, J Z; Pepper, A E; Abdullaev, A A; Kushanov, F N; Salakhutdinov, I B; Buriev, Z T; Saha, S; Scheffler, B E; Jenkins, J N; Abdukarimov, A

    2008-12-01

    The narrow genetic base of cultivated cotton germplasm is hindering the cotton productivity worldwide. Although potential genetic diversity exists in Gossypium genus, it is largely 'underutilized' due to photoperiodism and the lack of innovative tools to overcome such challenges. The application of linkage disequilibrium (LD)-based association mapping is an alternative powerful molecular tool to dissect and exploit the natural genetic diversity conserved within cotton germplasm collections, greatly accelerating still 'lagging' cotton marker-assisted selection (MAS) programs. However, the extent of genome-wide linkage disequilibrium (LD) has not been determined in cotton. We report the extent of genome-wide LD and association mapping of fiber quality traits by using a 95 core set of microsatellite markers in a total of 285 exotic Gossypium hirsutum accessions, comprising of 208 landrace stocks and 77 photoperiodic variety accessions. We demonstrated the existence of useful genetic diversity within exotic cotton germplasm. In this germplasm set, 11-12% of SSR loci pairs revealed a significant LD. At the significance threshold (r(2)>/=0.1), a genome-wide average of LD declines within the genetic distance at 30 cM in variety germplasm. Genome wide LD at r(2)>/=0.2 was reduced on average to approximately 1-2 cM in the landrace stock germplasm and 6-8 cM in variety germplasm, providing evidence of the potential for association mapping of agronomically important traits in cotton. We observed significant population structure and relatedness in assayed germplasm. Consequently, the application of the mixed liner model (MLM), considering both kinship (K) and population structure (Q) detected between 6% and 13% of SSR markers associated with the main fiber quality traits in cotton. Our results highlight for the first time the feasibility and potential of association mapping, with consideration of the population structure and stratification existing in cotton germplasm

  15. Partial Dominance, Overdominance and Epistasis as the Genetic Basis of Heterosis in Upland Cotton (Gossypium hirsutum L.)

    Science.gov (United States)

    Wang, Yumei; Hua, Jinping

    2015-01-01

    Determination of genetic basis of heterosis may promote hybrid production in Upland cotton (Gossypium hirsutum L.). This study was designed to explore the genetic mechanism of heterosis for yield and yield components in F2: 3 and F2: 4 populations derived from a hybrid ‘Xinza No. 1’. Replicated yield field trials of the progenies were conducted in 2008 and 2009. Phenotypic data analyses indicated overdominance in F1 for yield and yield components. Additive and dominance effects at single-locus level and digenic epistatic interactions at two-locus level were analyzed by 421 marker loci spanning 3814 cM of the genome. A total of 38 and 49 QTLs controlling yield and yield components were identified in F2: 3 and F2: 4 populations, respectively. Analyses of these QTLs indicated that the effects of partial dominance and overdominance contributed to heterosis in Upland cotton simultaneously. Most of the QTLs showed partial dominance whereas 13 QTLs showing overdominance in F2:3 population, and 19 QTLs showed overdominance in F2:4. Among them, 21 QTLs were common in both F2: 3 and F2: 4 populations. A large number of two-locus interactions for yield and yield components were detected in both generations. AA (additive × additive) epistasis accounted for majority portion of epistatic effects. Thirty three complementary two-locus homozygotes (11/22 and 22/11) were the best genotypes for AA interactions in terms of bolls per plant. Genotypes of double homozygotes, 11/22, 22/11 and 22/22, performed best for AD/DA interactions, while genotype of 11/12 performed best for DD interactions. These results indicated that (1) partial dominance and overdominance effects at single-locus level and (2) epistasis at two-locus level elucidated the genetic basis of heterosis in Upland cotton. PMID:26618635

  16. Evaluation of haemoglobin (erythrogen): for improved somatic embryogenesis and plant regeneration in cotton (Gossypium hirsutum L. cv. SVPR 2).

    Science.gov (United States)

    Ganesan, M; Jayabalan, N

    2004-10-01

    Somatic embryogenesis in cotton (Gossypium hirsutum L.) is accelerated when the plant regeneration medium is supplemented with haemoglobin (erythrogen). In cotton SVPR 2 lines, a higher frequency of embryoid formation was observed when the medium contained 400 mg/l haemoglobin. Fresh weight of the callus, rate of embryoid induction, number of embryoids formed and the percentage of plant regeneration from somatic embryos were increased. Among the two different cultivars tested, MCU 11 showed no response to the presence of haemoglobin when compared to SVPR 2, and embryogenic callus formation was completely absent in the former. Medium containing MS salts, 100 mg/l myo-inositol , 0.3 mg/l thiamine-HCL, 0.3 mg/l Picloram (PIC), 0.1 mg/l kinetin and 400 mg/l haemoglobin effected a better response with respect to embryogenic callus induction. After 8 weeks of culture, a high frequency of embryoid induction was observed on medium containing MS basal salts, 100 mg/l myo-inositol, 0.3 mg/l PIC , 0.1 mg/l isopentenyl adenine, 1.0 g/l NH4NO3 and 400 mg/l haemoglobin. Plant regeneration was observed in 75.8% of the mature somatic embryos, and whole plant regeneration was achieved within 6-7 months of culture. The regenerated plantlets were fertile and similar to in vivo-grown, seed-derived plants except that they were phenotypically smaller. A positive influence of haemoglobin was observed at concentrations up to 400 mg/l at all stages of somatic embryogenesis. The increase in the levels of antioxidant enzyme activities, for example superoxide dismutase and peroxidase, indicated the presence of excess oxygen uptake and the stressed condition of the plant tissues that arose from haemoglobin supplementation. This increased oxygen uptake and haemoglobin-mediated stress appeared to accelerate somatic embryogenesis in cotton.

  17. Phytochrome RNAi enhances major fibre quality and agronomic traits of the cotton Gossypium hirsutum L

    Science.gov (United States)

    Abdurakhmonov, Ibrokhim Y.; Buriev, Zabardast T.; Saha, Sukumar; Jenkins, Johnie N.; Abdukarimov, Abdusattor; Pepper, Alan E.

    2014-01-01

    Simultaneous improvement of fibre quality, early-flowering, early-maturity and productivity in Upland cotton (G. hirsutum) is a challenging task for conventional breeding. The influence of red/far-red light ratio on the fibre length prompted us to examine the phenotypic effects of RNA interference (RNAi) of the cotton PHYA1 gene. Here we show a suppression of up to ~70% for the PHYA1 transcript, and compensatory overexpression of up to ~20-fold in the remaining phytochromes in somatically regenerated PHYA1 RNAi cotton plants. Two independent transformants of three generations exhibited vigorous root and vegetative growth, early-flowering, significantly improved upper half mean fibre length and an improvement in other major fibre characteristics. Small decreases in lint traits were observed but seed cotton yield was increased an average 10-17% compared with controls. RNAi-associated phenotypes were heritable and transferable via sexual hybridization. These results should aid in the development of early-maturing and productive Upland cultivars with superior fibre quality.

  18. New red flower germplasm lines of cotton selected from hybrid of Gossypium hirsutum × G. bickii

    Institute of Scientific and Technical Information of China (English)

    梁正兰; 姜茹琴; 钟文南

    1997-01-01

    By means of dropping GA3 (50 ppm) and NAA (40 ppm) on the hybrid boll-embryo culture in vitro, one F1 plant of G. hirsutum G. bickii was obtained; when F1 branches were grafted on upland cotton and then back-crossed with upland cotton under short-day and cooler-night condition, some BC1 seeds could be harvested. The characteristic segregation was very violent in early generation. Through 3 times of back-crossing and selecting, ten stable hybrid lines with the character of both male parent (viz. red petal-purple spot and strong fibre) and female par-ent (plant type, earliness, white fibre, lint length, etc. ) were established. These lines were assigned as HB red flow-er lines (HBRL). Transference of character of G. bickii to upland cotton was proved to be successful for the first time. These new germplasms may play an important role in both the genetic research and new cotton variety breeding.

  19. Submission to NCBI Sequence Read Archive (SRA): Raw read files from manuscript “RNA-seq transcriptome profiling of upland cotton (Gossypium hirsutum) root tissue under water deficit stress” NCBI SRA Accession No. PRJNA210770

    Science.gov (United States)

    Gossypium hirsutum L. cultivar Siokra L-23 was grown under rainfed and irrigated treatments in a field with very sandy soil. Root samples were collected for each treatment during the reproductive growth period. The RNA of all root tissues was used in an RNA-seq transcriptome profiling study with an ...

  20. Breeding Potential of Introgression Lines Developed from Interspecific Crossing between Upland Cotton (Gossypium hirsutum and Gossypium barbadense: Heterosis, Combining Ability and Genetic Effects.

    Directory of Open Access Journals (Sweden)

    Jinfa Zhang

    Full Text Available Upland cotton (Gossypium hirstum L., which produces more than 95% of the world natural cotton fibers, has a narrow genetic base which hinders progress in cotton breeding. Introducing germplasm from exotic sources especially from another cultivated tetraploid G. barbadense L. can broaden the genetic base of Upland cotton. However, the breeding potential of introgression lines (ILs in Upland cotton with G. barbadense germplasm integration has not been well addressed. This study involved six ILs developed from an interspecific crossing and backcrossing between Upland cotton and G. barbadense and represented one of the first studies to investigate breeding potentials of a set of ILs using a full diallel analysis. High mid-parent heterosis was detected in several hybrids between ILs and a commercial cultivar, which also out-yielded the high-yielding cultivar parent in F1, F2 and F3 generations. A further analysis indicated that general ability (GCA variance was predominant for all the traits, while specific combining ability (SCA variance was either non-existent or much lower than GCA. The estimated GCA effects and predicted additive effects for parents in each trait were positively correlated (at P<0.01. Furthermore, GCA and additive effects for each trait were also positively correlated among generations (at P<0.05, suggesting that F2 and F3 generations can be used as a proxy to F1 in analyzing combining abilities and estimating genetic parameters. In addition, differences between reciprocal crosses in F1 and F2 were not significant for yield, yield components and fiber quality traits. But maternal effects appeared to be present for seed oil and protein contents in F3. This study identified introgression lines as good general combiners for yield and fiber quality improvement and hybrids with high heterotic vigor in yield, and therefore provided useful information for further utilization of introgression lines in cotton breeding.

  1. [Glyphosate-resistant cotton (Gossypium hirsutum L.) Transformed with aroAM12 gene via Agrobacterium tumefaciens].

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    Xie, Long-Xu; Li, Yun-Feng; Xu, Pei-Lin

    2004-04-01

    A mutant, aroAM12, exhibiting resistance to glyphosate produced in a previous study using the staggered extension process with aroA genes from Salmonella typhimurium and Eschrichia coli. In this paper, we constructed a vector pGRA1300 carrying aroAM12 gene, comprising transit peptide of Arabidopsis EPSPS, under the control of the CaMV35S promoter and used as selectable marker for cotton plant (Gossypium hirsutum L.) transformation. Transgenic cottons with increased resistance to glyphosate were obtained by cotransformtion of hypocotyl segments with Agrobacterium tumefaciens and selected directly on medium containing glyphosate. Regeneration of glyphosate-resistant calli was carried out on a MS basic medium containing 2,4-D 0.1 mg/L, KT 0.1 mg/L, cefotaxime 500 mg/L and glyphosate 60 micromol/L. Globular embryos were induced and then developed by culturing on MSB (MS salts+B(5) vitamins) medium supplemented with asparagine 1 g/L and glutamine 2 g/L, but not containing hormone, for 40 d. The developed plantlets were then removed and cultured on an MS medium. After about 20 d, the deeply-rooted shoots were in soil. PCR analysis showed that the aroAM12 gene was present in all T(0) transgenic plants. The integration of the aroAM12 gene in the genomic DNA of cotton was further confirmed by Southern blot, which showed that the transgenic plants carried one or two copies of the aroAM12 genes. Western blot analysis showed that a 48-kD band of was detected in all T(0) transgenic plants. There was no apparent corelation between copy numbers and the expression level of the aroAM12 gene. Greenhouse screening for glyphosate resistance was performed to test 65 independent T(0) plants by spraying (three times) with an aqueous suspension at a dose corresponding to 9.317 kg/ha of Roundup (once every 5 d). After 15 d, phenotype examination was carried out of the plants in comparison with untransformed control plants. Under these conditions, it was observed that the plants transformed

  2. A New Synthetic Amphiploid (AADDAA between Gossypium hirsutum and G. arboreum Lays the Foundation for Transferring Resistances to Verticillium and Drought.

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    Yu Chen

    Full Text Available Gossypium arboreum, a cultivated cotton species (2n = 26, AA native to Asia, possesses invaluable characteristics unavailable in the tetraploid cultivated cotton gene pool, such as resistance to pests and diseases and tolerance to abiotic stresses. However, it is quite difficult to transfer favorable traits into Upland cotton through conventional methods due to the cross-incompatibility of G. hirsutum (2n = 52, AADD and G. arboreum. Here, we improved an embryo rescue technique to overcome the cross-incompatibility between these two parents for transferring favorable genes from G. arboreum into G. hirsutum. Our results indicate that MSB2K supplemented with 0.5 mg l(-1 kinetin and 250 mg(-1 casein hydrolysate is an efficient initial medium for rescuing early (3 d after pollination hybrid embryos. Eight putative hybrids were successfully obtained, which were further verified and characterized by cytology, molecular markers and morphological analysis. The putative hybrids were subsequently treated with different concentrations of colchicine solution to double their chromosomes. The results demonstrate that four putative hybrid plants were successfully chromosome-doubled by treatment with 0.1% colchicine for 24 h and become amphiploid, which were confirmed by cytological observation, self-fertilization and backcrossing. Preliminary assessments of resistance at seedling stage indicate that the synthetic amphiploid showed highly resistant to Verticillium and drought. The synthetic amphiploid between G. hirsutum × G. arboreum would lay the foundation for developing G. arboreum-introgressed lines with the uniform genetic background of G. hirsutum acc TM-1, which would greatly enhance and simplify the mining, isolation, characterization, cloning and use of G. arboreum-specific desirable genes in future cotton breeding programs.

  3. A New Synthetic Amphiploid (AADDAA) between Gossypium hirsutum and G. arboreum Lays the Foundation for Transferring Resistances to Verticillium and Drought.

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    Chen, Yu; Wang, Yingying; Zhao, Ting; Yang, Jianwei; Feng, Shouli; Nazeer, Wajad; Zhang, Tianzhen; Zhou, Baoliang

    2015-01-01

    Gossypium arboreum, a cultivated cotton species (2n = 26, AA) native to Asia, possesses invaluable characteristics unavailable in the tetraploid cultivated cotton gene pool, such as resistance to pests and diseases and tolerance to abiotic stresses. However, it is quite difficult to transfer favorable traits into Upland cotton through conventional methods due to the cross-incompatibility of G. hirsutum (2n = 52, AADD) and G. arboreum. Here, we improved an embryo rescue technique to overcome the cross-incompatibility between these two parents for transferring favorable genes from G. arboreum into G. hirsutum. Our results indicate that MSB2K supplemented with 0.5 mg l(-1) kinetin and 250 mg(-1) casein hydrolysate is an efficient initial medium for rescuing early (3 d after pollination) hybrid embryos. Eight putative hybrids were successfully obtained, which were further verified and characterized by cytology, molecular markers and morphological analysis. The putative hybrids were subsequently treated with different concentrations of colchicine solution to double their chromosomes. The results demonstrate that four putative hybrid plants were successfully chromosome-doubled by treatment with 0.1% colchicine for 24 h and become amphiploid, which were confirmed by cytological observation, self-fertilization and backcrossing. Preliminary assessments of resistance at seedling stage indicate that the synthetic amphiploid showed highly resistant to Verticillium and drought. The synthetic amphiploid between G. hirsutum × G. arboreum would lay the foundation for developing G. arboreum-introgressed lines with the uniform genetic background of G. hirsutum acc TM-1, which would greatly enhance and simplify the mining, isolation, characterization, cloning and use of G. arboreum-specific desirable genes in future cotton breeding programs.

  4. Current status of genetic engineering in cotton (Gossypium hirsutum L): an assessment.

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    Chakravarthy, Vajhala S K; Reddy, Tummala Papi; Reddy, Vudem Dashavantha; Rao, Khareedu Venkateswara

    2014-06-01

    Cotton is considered as the foremost commercially important fiber crop and is deemed as the backbone of the textile industry. The productivity of cotton crop, worldwide, is severely hampered by the occurrence of pests, weeds, pathogens apart from various environmental factors. Several beneficial agronomic traits, viz., early maturity, improved fiber quality, heat tolerance, etc. have been successfully incorporated into cotton varieties employing conventional hybridization and mutation breeding. Crop losses, due to biotic factors, are substantial and may be reduced through certain crop protection strategies. In recent years, pioneering success has been achieved through the adoption of modern biotechnological approaches. Genetically engineered cotton varieties, expressing Bacillus thuringiensis cry genes, proved to be highly successful in controlling the bollworm complex. Various other candidate genes responsible for resistance to insect pests and pathogens, tolerance to major abiotic stress factors such as temperature, drought and salinity, have been introduced into cotton via genetic engineering methods to enhance the agronomic performance of cotton cultivars. Furthermore, genes for improving the seed oil quality and fiber characteristics have been identified and introduced into cotton cultivars. This review provides a brief overview of the various advancements made in cotton through genetic engineering approaches.

  5. Interference between Redroot Pigweed (Amaranthus retroflexus L.) and Cotton (Gossypium hirsutum L.): Growth Analysis.

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    Ma, Xiaoyan; Wu, Hanwen; Jiang, Weili; Ma, Yajie; Ma, Yan

    2015-01-01

    Redroot pigweed is one of the injurious agricultural weeds on a worldwide basis. Understanding of its interference impact in crop field will provide useful information for weed control programs. The effects of redroot pigweed on cotton at densities of 0, 0.125, 0.25, 0.5, 1, 2, 4, and 8 plants m(-1) of row were evaluated in field experiments conducted in 2013 and 2014 at Institute of Cotton Research, CAAS in China. Redroot pigweed remained taller and thicker than cotton and heavily shaded cotton throughout the growing season. Both cotton height and stem diameter reduced with increasing redroot pigweed density. Moreover, the interference of redroot pigweed resulted in a delay in cotton maturity especially at the densities of 1 to 8 weed plants m(-1) of row, and cotton boll weight and seed numbers per boll were reduced. The relationship between redroot pigweed density and seed cotton yield was described by the hyperbolic decay regression model, which estimated that a density of 0.20-0.33 weed plant m(-1) of row would result in a 50% seed cotton yield loss from the maximum yield. Redroot pigweed seed production per plant or per square meter was indicated by logarithmic response. At a density of 1 plant m(-1) of cotton row, redroot pigweed produced about 626,000 seeds m(-2). Intraspecific competition resulted in density-dependent effects on weed biomass per plant, a range of 430-2,250 g dry weight by harvest. Redroot pigweed biomass ha(-1) tended to increase with increasing weed density as indicated by a logarithmic response. Fiber quality was not significantly influenced by weed density when analyzed over two years; however, the fiber length uniformity and micronaire were adversely affected at density of 1 weed plant m(-1) of row in 2014. The adverse impact of redroot pigweed on cotton growth and development identified in this study has indicated the need of effective redroot pigweed management.

  6. ACQUIREMENT OF TRANSGENIC COTTON (GOSSYPIUM HIRSUTUM L. RESISTANT TO HERBICIDE AND INSECT USING GLYPHOSATE-TOLERANT aroAM12 GENE AS A SELECTABLE MARKER

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    Xie Longxu

    2005-08-01

    , was used as a dominant selectable marker for cotton plant transformation. The genes were introduced into commercial cultivar Zhongmian12 of cotton (Gossypium hirsutum L. by Agrobacterium-mediated transformation. The transformants were directly selected on medium supplemented with 80μmol/L glyphosate. In this research, 40 regenerative cotton plantlets were obtained through screening. Integration of aroAM12 and Bts1m genes was confirmed by PCR and Southern blot, the results indicated that all the 40 plants possessed the aroAM12 gene, 28 of which possessed both the aroAM12 and BtS1m genes. Expression of both the genes was established by Western blots. Insect bioassay and glyphosate resistance assay indicated that the transgenic cotton plants obtained were highly resistant to glyphosate and insect. The results of glyphosate resistance and insect bioassay of T1 generation showed that the numbers of resistance and sensitive phenotypes showed Mendelian segregation ratio.

  7. Cytogenetic maps of homoeologous chromosomes A h01 and D h01 and their integration with the genome assembly in Gossypium hirsutum

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    Yuling Liu

    2017-06-01

    Full Text Available Cytogenetic maps of Gossypium hirsutum (Linnaeus, 1753 homoeologous chromosomes Ah01 and Dh01 were constructed by fluorescence in situ hybridization (FISH, using eleven homoeologous-chromosomes-shared bacterial artificial chromosomes (BACs clones and one chromosome-specific BAC clone respectively. We compared the cytogenetic maps with the genetic linkage and draft genome assembly maps based on a standardized map unit, relative map position (RMP, which allowed a global view of the relationship of genetic and physical distances along each chromosome, and assembly quality of the draft genome assembly map. By integration of cytogenetic maps with sequence maps of the two chromosomes (Ah01 and Dh01, we inferred the locations of two scaffolds and speculated that some homologous sequences belonging to homoeologous chromosomes were removed as repetitiveness during the sequence assembly. The result offers molecular tools for cotton genomics research and also provides valuable information for the improvement of the draft genome assembly.

  8. Peliculização e tratamento químico de sementes de algodoeiro (Gossypium hirsutum L. Film-coating and chemical treatment of cotton seeds (Gossypium hirsutum L.

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    Liana Baptista de Lima

    2006-12-01

    Full Text Available O estabelecimento ideal de plantas no campo é determinado, dentre outros fatores, pela qualidade fisiológica e sanitária das sementes utilizadas. Neste sentido, o tratamento químico de sementes torna-se essencial, pois proporciona melhor desempenho das mesmas no campo. Atualmente, em associação com o tratamento químico, a fim de aumentar a aderência dos produtos químicos nas sementes, dentre outros objetivos, tem sido estudada a utilização de películas de revestimento. Com este trabalho, objetivou-se avaliar a qualidade fisiológica e sanitária de sementes de algodoeiro de quatro lotes, tratadas quimicamente e peliculizadas com 2 tipos de películas comerciais. Utilizou-se dois lotes da cultivar Delta Opal, dois da cultivar Sure Grow, e dois tipos de películas, denominadas AG201 e TGBP1080. As sementes foram submetidas ao tratamento com a mistura dos fungicidas carboxin+thiram com o inseticida imidacloprid, na dosagem 5 mL/Kg + 5 mL/Kg de sementes e na dosagem 2,5 mL/Kg + 2,5 mL/Kg de sementes. Os tratamentos foram avaliados por teste de germinação, teste de emergência de plântulas, índice de velocidade de emergência, teste de frio e de sanidade. O tratamento químico com a mistura de carboxin+thiram com imidacloprid, na dosagem 5 mL/Kg + 5 mL/Kg de sementes promove melhor desempenho das sementes, sendo eficaz no controle de fungos. O uso da peliculização não possibilita redução da dosagem do tratamento químico. A peliculização não afeta a germinação, emergência e índice de velocidade de emergência de lotes de alta qualidade.Physiological and healthy quality of cotton seeds (Gossypium hirsutum L. are decisive factor to establish an ideal stand in the field. The chemical seed treatment is necessary to preserve the healthy quality and to obtain a better development performance of the seeds in the field. Actually, researches on chemical treatment are liberally conducted, which film-coating technique has been used

  9. Genome-Wide Identification of the MIKC-Type MADS-Box Gene Family in Gossypium hirsutum L. Unravels Their Roles in Flowering

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    Ren, Zhongying; Yu, Daoqian; Yang, Zhaoen; Li, Changfeng; Qanmber, Ghulam; Li, Yi; Li, Jie; Liu, Zhao; Lu, Lili; Wang, Lingling; Zhang, Hua; Chen, Quanjia; Li, Fuguang; Yang, Zuoren

    2017-01-01

    Cotton is one of the major world oil crops. Cottonseed oil meets the increasing demand of fried food, ruminant feed, and renewable bio-fuels. MADS intervening keratin-like and C-terminal (MIKC)-type MADS-box genes encode transcription factors that have crucial roles in various plant developmental processes. Nevertheless, this gene family has not been characterized, nor its functions investigated, in cotton. Here, we performed a comprehensive analysis of MIKC-type MADS genes in the tetraploid Gossypium hirsutum L., which is the most widely cultivated cotton species. In total, 110 GhMIKC genes were identified and phylogenetically classified into 13 subfamilies. The Flowering locus C (FLC) subfamily was absent in the Gossypium hirsutum L. genome but is found in Arabidopsis and Vitis vinifera L. Among the genes, 108 were distributed across the 13 A and 12 of the D genome's chromosomes, while two were located in scaffolds. GhMIKCs within subfamilies displayed similar exon/intron characteristics and conserved motif compositions. According to RNA-sequencing, most MIKC genes exhibited high flowering-associated expression profiles. A quantitative real-time PCR analysis revealed that some crucial MIKC genes determined the identities of the five flower organs. Furthermore, the overexpression of GhAGL17.9 in Arabidopsis caused an early flowering phenotype. Meanwhile, the expression levels of the flowering-related genes CONSTANS (CO), LEAFY (LFY) and SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 (SOC1) were significantly increased in these lines. These results provide useful information for future studies of GhMIKCs' regulation of cotton flowering. PMID:28382045

  10. Distribution and differentiation of wild, feral, and cultivated populations of perennial upland cotton (Gossypium hirsutum L.) in Mesoamerica and the Caribbean.

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    Coppens d'Eeckenbrugge, Geo; Lacape, Jean-Marc

    2014-01-01

    Perennial forms of Gossypium hirsutum are classified under seven races. Five Mesoamerican races would have been derived from the wild race 'yucatanense' from northern Yucatán. 'Marie-Galante', the main race in the Caribbean, would have developed from introgression with G. barbadense. The racial status of coastal populations from the Caribbean has not been clearly defined. We combined Ecological Niche Modeling with an analysis of SSR marker diversity, to elucidate the relationships among cultivated, feral and wild populations of perennial cottons. Out of 954 records of occurrence in Mesoamerica and the Caribbean, 630 were classified into four categories cultivated, feral (disturbed and secondary habitats), wild/feral (protected habitats), and truly wild cotton (TWC) populations. The widely distributed three first categories cannot be differentiated on ecological grounds, indicating they mostly belong to the domesticated pool. In contrast, TWC are restricted to the driest and hottest littoral habitats, in northern Yucatán and in the Caribbean (from Venezuela to Florida), as confirmed by their climatic envelope in the factorial analysis. Extrapolating this TWC climatic model to South America and the Pacific Ocean points towards places where other wild representatives of tetraploid Gossypium species have been encountered. The genetic analysis sample comprised 42 TWC accessions from 12 sites and 68 feral accessions from 18 sites; at nine sites, wild and feral accessions were collected in close vicinity. Principal coordinate analysis, neighbor joining, and STRUCTURE consistently showed a primary divergence between TWC and feral cottons, and a secondary divergence separating 'Marie-Galante' from all other feral accessions. This strong genetic structure contrasts strikingly with the absence of geographic differentiation. Our results show that TWC populations of Mesoamerica and the Caribbean constitute a homogenous gene pool. Furthermore, the relatively low genetic

  11. Distribution and differentiation of wild, feral, and cultivated populations of perennial upland cotton (Gossypium hirsutum L. in Mesoamerica and the Caribbean.

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    Geo Coppens d'Eeckenbrugge

    Full Text Available Perennial forms of Gossypium hirsutum are classified under seven races. Five Mesoamerican races would have been derived from the wild race 'yucatanense' from northern Yucatán. 'Marie-Galante', the main race in the Caribbean, would have developed from introgression with G. barbadense. The racial status of coastal populations from the Caribbean has not been clearly defined. We combined Ecological Niche Modeling with an analysis of SSR marker diversity, to elucidate the relationships among cultivated, feral and wild populations of perennial cottons. Out of 954 records of occurrence in Mesoamerica and the Caribbean, 630 were classified into four categories cultivated, feral (disturbed and secondary habitats, wild/feral (protected habitats, and truly wild cotton (TWC populations. The widely distributed three first categories cannot be differentiated on ecological grounds, indicating they mostly belong to the domesticated pool. In contrast, TWC are restricted to the driest and hottest littoral habitats, in northern Yucatán and in the Caribbean (from Venezuela to Florida, as confirmed by their climatic envelope in the factorial analysis. Extrapolating this TWC climatic model to South America and the Pacific Ocean points towards places where other wild representatives of tetraploid Gossypium species have been encountered. The genetic analysis sample comprised 42 TWC accessions from 12 sites and 68 feral accessions from 18 sites; at nine sites, wild and feral accessions were collected in close vicinity. Principal coordinate analysis, neighbor joining, and STRUCTURE consistently showed a primary divergence between TWC and feral cottons, and a secondary divergence separating 'Marie-Galante' from all other feral accessions. This strong genetic structure contrasts strikingly with the absence of geographic differentiation. Our results show that TWC populations of Mesoamerica and the Caribbean constitute a homogenous gene pool. Furthermore, the relatively

  12. Water deficit in field-grown Gossypium hirsutum primarily limits net photosynthesis by decreasing stomatal conductance, increasing photorespiration, and increasing the ratio of dark respiration to gross photosynthesis.

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    Chastain, Daryl R; Snider, John L; Collins, Guy D; Perry, Calvin D; Whitaker, Jared; Byrd, Seth A

    2014-11-01

    Much effort has been expended to improve irrigation efficiency and drought tolerance of agronomic crops; however, a clear understanding of the physiological mechanisms that interact to decrease source strength and drive yield loss has not been attained. To elucidate the underlying mechanisms contributing to inhibition of net carbon assimilation under drought stress, three cultivars of Gossypium hirsutum were grown in the field under contrasting irrigation regimes during the 2012 and 2013 growing season near Camilla, Georgia, USA. Physiological measurements were conducted on three sample dates during each growing season (providing a broad range of plant water status) and included, predawn and midday leaf water potential (ΨPD and ΨMD), gross and net photosynthesis, dark respiration, photorespiration, and chlorophyll a fluorescence. End-of-season lint yield was also determined. ΨPD ranged from -0.31 to -0.95MPa, and ΨMD ranged from -1.02 to -2.67MPa, depending upon irrigation regime and sample date. G. hirsutum responded to water deficit by decreasing stomatal conductance, increasing photorespiration, and increasing the ratio of dark respiration to gross photosynthesis, thereby limiting PN and decreasing lint yield (lint yield declines observed during the 2012 growing season only). Conversely, even extreme water deficit, causing a 54% decline in PN, did not negatively affect actual quantum yield, maximum quantum yield, or photosynthetic electron transport. It is concluded that PN is primarily limited in drought-stressed G. hirsutum by decreased stomatal conductance, along with increases in respiratory and photorespiratory carbon losses, not inhibition or down-regulation of electron transport through photosystem II. It is further concluded that ΨPD is a reliable indicator of drought stress and the need for irrigation in field-grown cotton.

  13. Cotton (Gossypium hirsutum L.).

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    Rathore, Keerti S; Campbell, LeAnne M; Sherwood, Shanna; Nunes, Eugenia

    2015-01-01

    Cotton continues to be a crop of great economic importance in many developing and some developed countries. Cotton plants expressing the Bt gene to deter some of the major pests have been enthusiastically and widely accepted by the farmers in three of the major producing countries, i.e., China, India, and the USA. Considering the constraints related to its production and the wide variety of products derived from the cotton plant, it offers several target traits that can be improved through genetic engineering. Thus, there is a great need to accelerate the application of biotechnological tools for cotton improvement. This requires a simple, yet robust gene delivery/transformant recovery system. Recently, a protocol, involving large-scale, mechanical isolation of embryonic axes from germinating cottonseeds followed by direct transformation of the meristematic cells has been developed by an industrial laboratory. However, complexity of the mechanical device and the patent restrictions are likely to keep this method out of reach of most academic laboratories. In this chapter, we describe the method developed in our laboratory that has undergone further refinements and involves Agrobacterium-mediated transformation of cotton cells, selection of stable transgenic callus lines, and recovery of plants via somatic embryogenesis.

  14. Next Generation Genetic Mapping of the Ligon-lintless-2 (Li2) Locus in Upland Cotton (Gossypium hirsutum L.)

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    Next generation sequencing offers new ways to identify the genetic mechanisms that underlie mutant phenotypes. The release of a reference diploid Gossypium raimondii (D5) genome and bioinformatics tools to sort tetraploid reads into subgenomes has brought cotton genetic mapping into the genomics er...

  15. High temperature limits in vivo pollen tube growth rates by altering diurnal carbohydrate balance in field-grown Gossypium hirsutum pistils.

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    Snider, John L; Oosterhuis, Derrick M; Loka, Dimitra A; Kawakami, Eduardo M

    2011-07-15

    It has recently been reported that high temperature slows in vivo pollen tube growth rates in Gossypium hirsutum pistils under field conditions. Although numerous physical and biochemical pollen-pistil interactions are necessary for in vivo pollen tube growth to occur, studies investigating the influence of heat-induced changes in pistil biochemistry on in vivo pollen tube growth rates are lacking. We hypothesized that high temperature would alter diurnal pistil biochemistry and that pollen tube growth rates would be dependent upon the soluble carbohydrate content of the pistil during pollen tube growth. G. hirsutum seeds were sown on different dates to obtain flowers exposed to contrasting ambient temperatures but at the same developmental stage. Diurnal pistil measurements included carbohydrate balance, glutathione reductase (GR; EC 1.8.1.7), soluble protein, superoxide dismutase (SOD; EC 1.15.1.1), NADPH oxidase (NOX; EC 1.6.3.1), adenosine triphosphate (ATP), and water-soluble calcium. Soluble carbohydrate levels in cotton pistils were as much as 67.5% lower under high temperature conditions (34.6 °C maximum air temperature; August 4, 2009) than under cooler conditions (29.9 °C maximum air temperature; August 14, 2009). Regression analysis revealed that pollen tube growth rates were highly correlated with the soluble carbohydrate content of the pistil during pollen tube growth (r² = 0.932). Higher ambient temperature conditions on August 4 increased GR activity in the pistil only during periods not associated with in vivo pollen tube growth; pistil protein content declined earlier in the day under high temperatures; SOD and NOX were unaffected by either sample date or time of day; pistil ATP and water soluble calcium were unaffected by the warmer temperatures. We conclude that moderate heat stress significantly alters diurnal carbohydrate balance in the pistil and suggest that pollen tube growth rate through the style may be limited by soluble carbohydrate

  16. Effects of Different Densities of Cotton (Gossypium Hirsutum and Common Lambsquarter (Chenopodium Album on Some Cotton Growth Characteristics in Birjand Condition

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    M. Velayati

    2011-01-01

    Full Text Available Abstract Weeds are problematic plants in agroecosystems as a competitor for crops. In order to evaluate effects of cotton (Gossypium hirsutum and common lambsquarter (Chenopodium album densities on some crop growth indices, a study was conducted during 2006 in Experimental Station of Faculty of Agriculture, The University of Birjand as factorial experiment based on complete randomized block design with four replications. Three densities of cotton (6, 9 and 12 Pl.m-2 and four weed densities (0, 6, 9 and 12 Pl.m-2 were used to provide different weed interference levels. Indeed, three plots in each replication were intended to cultivation of lambsquarter alone at 6, 9 or 12 Pl.m-2. Results showed that crop growth rate (CGR of cotton was influenced by weed density, and its relative growth rate (RGR and net assimilation rate (NAR indicated a declining trend as weed density increased. Dry matter accumulation of cotton also was affected negatively by weed densities, as interference of lambsquarter at 6, 9 and 12 Pl.m-2 resulted to 35, 42 and 48 percent dry matter reduction, respectively, than weed-free treatment. Increasing of cotton density could partly compensate for negative impact of weed attendance on cotton growth. Thus, it seems higher plant densities can be used as a managing tool against weeds in cotton fields to avoid reduction of yield. Keywords: Cotton, Density, Weed, competition, Growth analysis

  17. Monopodial and sympodial branching architecture in cotton is differentially regulated by the Gossypium hirsutum SINGLE FLOWER TRUSS and SELF-PRUNING orthologs.

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    McGarry, Roisin C; Prewitt, Sarah F; Culpepper, Samantha; Eshed, Yuval; Lifschitz, Eliezer; Ayre, Brian G

    2016-10-01

    Domestication of upland cotton (Gossypium hirsutum) converted it from a lanky photoperiodic perennial to a day-neutral annual row-crop. Residual perennial traits, however, complicate irrigation and crop management, and more determinate architectures are desired. Cotton simultaneously maintains robust monopodial indeterminate shoots and sympodial determinate shoots. We questioned if and how the FLOWERING LOCUS T/SINGLE FLOWER TRUSS (SFT)-like and TERMINAL FLOWER1/SELF-PRUNING (SP)-like genes control the balance of monopodial and sympodial growth in a woody perennial with complex growth habit. Virus-based manipulation of GhSP and GhSFT expression enabled unprecedented functional analysis of cotton development. GhSP maintains growth in all apices; in its absence, both monopodial and sympodial branch systems terminate precociously. GhSFT encodes a florigenic signal stimulating rapid onset of sympodial branching and flowering in side shoots of wild photoperiodic and modern day-neutral accessions. High florigen concentrations did not alter monopodial apices, implying that once a cotton apex is SP-determined, it cannot be reset by florigen. GhSP is also essential to establish and maintain cambial activity. Dynamic changes in GhSFT and GhSP levels navigate meristems between monopodial and sympodial programs in a single plant. SFT and SP influenced cotton domestication and are ideal targets for further agricultural optimization.

  18. Confamiliar transferability of simple sequence repeat (SSR) markers from cotton (Gossypium hirsutum L.) and jute (Corchorus olitorius L.) to twenty two Malvaceous species.

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    Satya, Pratik; Paswan, Pramod Kumar; Ghosh, Swagata; Majumdar, Snehalata; Ali, Nasim

    2016-06-01

    Cross-species transferability is a quick and economic method to enrich SSR database, particularly for minor crops where little genomic information is available. However, transferability of SSR markers varies greatly between species, genera and families of plant species. We assessed confamiliar transferability of SSR markers from cotton (Gossypium hirsutum) and jute (Corchorus olitorius) to 22 species distributed in different taxonomic groups of Malvaceae. All the species selected were potential industrial crop species having little or no genomic resources or SSR database. Of the 14 cotton SSR loci tested, 13 (92.86 %) amplified in G. arboreum and 71.43 % exhibited cross-genera transferability. Nine out of 11 jute SSRs (81.81 %) showed cross-transferability across genera. SSRs from both the species exhibited high polymorphism and resolving power in other species. The correlation between transferability of cotton and jute SSRs were highly significant (r = 0.813). The difference in transferability among species was also significant for both the marker groups. High transferability was observed at genus, tribe and subfamily level. At tribe level, transferability of jute SSRs (41.04 %) was higher than that of cotton SSRs (33.74 %). The tribe Byttnerieae exhibited highest SSR transferability (48.7 %). The high level of cross-genera transferability (>50 %) in ten species of Malvaceae, where no SSR resource is available, calls for large scale transferability testing from the enriched SSR databases of cotton and jute.

  19. Polyamine and its metabolite H2O2 play a key role in the conversion of embryogenic callus into somatic embryos in upland cotton (Gossypium hirsutum L.

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    Wen-Han eCheng

    2015-12-01

    Full Text Available The objective of this study was to increase understanding about the mechanism by which polyamines (PAs promote the conversion of embryogenic calli (EC into somatic embryos in cotton (Gossypium hirsutum L.. We measured the levels of endogenous PAs and H2O2, quantified the expression levels of genes involved in the PAs pathway at various stages of cotton somatic embryogenesis (SE, and investigated the effects of exogenous PAs and H2O2 on differentiation and development of embryogenic calli. Putrescine (Put, spermidine (Spd and spermine (Spm significantly increased from the EC stage to the early phase of embryo differentiation. The levels of Put then decreased until the somatic embryo stage whereas Spd and Spm remained nearly the same. The expression profiles of GhADC genes were consistent with changes in Put during cotton SE. The H2O2 concentrations began to increase significantly at the EC stage, during which time both GhPAO1 and GhPAO4 expressions were highest and PAO activity was significantly increased. Exogenous Put, Spd, Spm and H2O2 not only enhanced embryogenic callus growth and embryo formation, but also alleviated the effects of D-arginine and 1, 8-diamino-octane, which are inhibitors of polyamine synthesis and PAO activity. Overall, the results suggest that both PAs and their metabolic product H2O2 are essential for the conversion of EC into somatic embryos in cotton.

  20. Slow desiccation leads to high-frequency shoot recovery from transformed somatic embryos of cotton (Gossypium hirsutum L. cv. Coker 310 FR).

    Science.gov (United States)

    Chaudhary, B; Kumar, S; Prasad, K V S K; Oinam, G S; Burma, P K; Pental, D

    2003-06-01

    In Agrobacterium-mediated genetic transformation of cotton (Gossypium hirsutum L. cv. Coker 310FR) the frequency at which somatic embryos were converted to plantlets was significantly improved by subjecting the embryos to slow physical desiccation. We used Agrobacterium strain GV3101 containing the binary vector pGSFR with the nos-nptII gene for in vitro selection and the 35S gus-int fragment as a reporter to optimize the transformation protocol. Although the concentration of kanamycin was reduced during embryogenesis and embryo maturation, even at the lower levels somatic embryos were predominantly abnormal, showing hypertrophy and reduced or fused cotyledons or poor radicle ends. A majority of these embryos (more than 75%) were beta-glucuronidase (GUS)-positive. Embryos with an abnormal appearance showed a very poor conversion to plantlets. However, these embryos, when subjected to slow physical desiccation followed by transfer to fresh medium, regenerated single or multiple shoots from the cotyledonary end. These shoots could be grafted on wild-type seedling stocks in vitro, which, following their transfer to soil, developed normally and set seeds. Regenerated plants tested positive for the transgene by Southern analysis. An overall scheme for the high-frequency production of cotton transgenics from both normal and abnormal appearing somatic embryos is presented.

  1. Incipient Genome Differentiation in Gossypium. III. Comparison of Chromosomes of G. HIRSUTUM and Asiatic Diploids Using Heterozygous Translocations.

    Science.gov (United States)

    Menzel, M Y; Hasenkampf, C A; Stewart, J M

    1982-01-01

    Hybrids between upland cotton (G. hirsutum, genome constitution 2A(h)D(h)) and either A-genome or D-genome diploid species exhibit 26 paired and 13 unpaired chromosomes at metaphase I. The A(h) and D(h) genomes are therefore considered homoeologous with those of the respective diploids. Previous studies, nevertheless, revealed a low level of ("incipient") differentiation between D(h) and various diploid D genomes. The diploid A genomes have been regarded as more closely homologous to A(h) on the basis of low preferential pairing and autotetraploid segregation ratios in allohexaploids.-The present study addressed the following questions: Are the diploid A genomes differentiated from A(h) in meiotic homology? If so, is the differentiation manifested equally by all 13 chromosomes or is it localized in certain chromosomes?-Three diploid A-genome lines representing G. herbaceum and G. arboreum were hybridized by in ovulo culture of embryos (1) with a standard line of G. hirsutum, which differs from G. herbaceum by two and from G. arboreum by three naturally occurring reciprocal translocations involving chromosomes 1-5, and (2) with six lines homozygous for experimental translocations involving chromosomes 6, 7, 10, 11, 12 and 13. Chiasma frequencies in hybrids were compared with those in appropriate G. hirsutum controls. In every comparison overall chiasma frequencies were slightly lower in the hybrids. Therefore A(h) appears to be differentiated from the diploid A genomes. No localized differentiation was detected in chromosomes marked by experimental translocations. The differentiation may be localized mainly in chromosomes 4 and 5.

  2. Les cotonniers (Gossypium hirsutum L. génétiquement modifiés, Bt : quel avenir pour la petite agriculture familiale en Afrique francophone ?

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    Berti F.

    2006-01-01

    Full Text Available Gnetically modifi ed cotton (Gossypium hirsutum L. Bt.: what future for small family farms in French-speaking Africa?After a massive adoption in South Africa, genetically modifi ed cultivars are at the door step of francophone Africa. In order toanticipate the impact of Bt cotton on small-scale farming we propose a simple profi t analysis of the crop based on our resultsfound in South Africa and data collected by our colleagues in Mali. Whereas the introduction of Bt cotton can be justifi ed bya threat of the appearance of the bollworm resistance to insecticides, its profi tability seems to be uncertain. The farmer profi tmargin depends on yield level linked with climatic, agricultural and environmental conditions and with the technology feewhich the farmer must be charged for. With a 210 FCFA purchase price for raw cotton, a 25 USD fee per hectare seems to bethe upper limit for which the farmer wouldnʼt be exposed to fi nancial risk. Given the recent drop of the purchase price, theexistence of a technology fee supported by the small-scale farmer is very questionable. At a more general level of the cottonsector, the success of Bt adoption rests on several keys: 1 the prevention of the Bt-toxin resistance; 2 the strengthening of thecontrol of stinging pests; 3 the updating of the seed production sector and 4 the improvement of the extension and trainingnetwork. Bt cotton must be considered as a tool which is part of the integrated crop management but not as the solution of thepoverty alleviation.

  3. Genome-Wide Transcriptome Analysis of Cotton (Gossypium hirsutum L.) Identifies Candidate Gene Signatures in Response to Aflatoxin Producing Fungus Aspergillus flavus.

    Science.gov (United States)

    Bedre, Renesh; Rajasekaran, Kanniah; Mangu, Venkata Ramanarao; Sanchez Timm, Luis Eduardo; Bhatnagar, Deepak; Baisakh, Niranjan

    2015-01-01

    Aflatoxins are toxic and potent carcinogenic metabolites produced from the fungi Aspergillus flavus and A. parasiticus. Aflatoxins can contaminate cottonseed under conducive preharvest and postharvest conditions. United States federal regulations restrict the use of aflatoxin contaminated cottonseed at >20 ppb for animal feed. Several strategies have been proposed for controlling aflatoxin contamination, and much success has been achieved by the application of an atoxigenic strain of A. flavus in cotton, peanut and maize fields. Development of cultivars resistant to aflatoxin through overexpression of resistance associated genes and/or knocking down aflatoxin biosynthesis of A. flavus will be an effective strategy for controlling aflatoxin contamination in cotton. In this study, genome-wide transcriptome profiling was performed to identify differentially expressed genes in response to infection with both toxigenic and atoxigenic strains of A. flavus on cotton (Gossypium hirsutum L.) pericarp and seed. The genes involved in antifungal response, oxidative burst, transcription factors, defense signaling pathways and stress response were highly differentially expressed in pericarp and seed tissues in response to A. flavus infection. The cell-wall modifying genes and genes involved in the production of antimicrobial substances were more active in pericarp as compared to seed. The genes involved in auxin and cytokinin signaling were also induced. Most of the genes involved in defense response in cotton were highly induced in pericarp than in seed. The global gene expression analysis in response to fungal invasion in cotton will serve as a source for identifying biomarkers for breeding, potential candidate genes for transgenic manipulation, and will help in understanding complex plant-fungal interaction for future downstream research.

  4. Site of clomazone action in tolerant-soybean and susceptible-cotton photomixotrophic cell suspension cultures. [Glycine max (L. ); Gossypium hirsutum

    Energy Technology Data Exchange (ETDEWEB)

    Norman, M.A.; Liebl, R.A.; Widholm, J.M. (Univ. of Illinois, Urbana (USA))

    1990-10-01

    Studies were conducted to determine the herbicidal site of clomazone action in tolerant-soybean (Glycine max (L.) Merr. cv Corsoy) (SB-M) and susceptible-cotton (Gossypium hirsutum (L.) cv Stoneville 825) (COT-M) photomixotrophic cell suspension cultures. Although a 10 micromolar clomazone treatment did not significantly reduce the terpene or mixed terpenoid content (microgram per gram fresh weight) of the SB-M cell line, there was over a 70% reduction in the chlorophyll (Chl), carotenoid (CAR), and plastoquinone (PQ) content of the COT-M cell line. The tocopherol (TOC) content was reduced only 35.6%. Reductions in the levels of Chl, CAR, TOC, and PQ indicate that the site of clomazone action in COT-M cells is prior to geranylgeranyl pyrophosphate (GGPP). The clomazone treatment did not significantly reduce the flow of ({sup 14}C)mevalonate (({sup 14}C)MEV) (nanocuries per gram fresh weight) into CAR and the three mixed terpenoid compounds of SB-M cells. Conversely, ({sup 14}C)MEV incorporation into CAR and the terpene moieties of Chl, PQ, and TOC in COT-M cells was reduced at least 73%, indicating that the site of clomazone action must be after MEV. Sequestration of clomazone away from the chloroplast cannot account for soybean tolerance to clomazone since chloroplasts isolated from both cell lines incubated with ({sup 14}C)clomazone contained a similar amount of radioactivity (disintegrations per minute per microgram of Chl). The possible site(s) of clomazone inhibition include mevalonate kinase, phosphomevalonate kinase, pyrophosphomevalonate decarboxylase, isopentenyl pyrophosphate isomerase, and/or a prenyl transferase.

  5. Identification of early salt-stress responsive proteins in seedling roots of upland cotton (Gossypium hirsutum L. employing iTRAQ-based proteomic technique

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    Wu eLi

    2015-09-01

    Full Text Available Soil salinity is a major abiotic stress that limits plant growth and agricultural productivity. Upland cotton (Gossypium hirsutum L. is highly tolerant to salinity; however, large-scale proteomic data of cotton in response to salt-stress are still scanty. Here, an iTRAQ-based proteomic technique was employed to identify the early differentially expressed proteins (DEPs from salt-treated cotton roots. 77 up-regulated and 52 down-regulated proteins were identified. The majority of the proteins have functions related to carbohydrate and energy metabolism, transcription related, protein metabolism, cell wall and cytoskeleton metabolism, membrane and transport, signal transduction, as well as stress and defense. It is worth emphasizing that some novel salt-responsive proteins were identified, which involved in cell cytoskeleton metabolism(ARP2 and FLAs), membrane transport(TIPs and PIPs), signal transduction(LRR-RLKs)and stress responses(TLP, USP, DIR,desiccation-related protein PCC13-62. High positive correlation was evaluated between the abundance of some altered proteins (SOD, POD, GST, MDAR and MDH and their enzyme activity. The results demonstrate the iTRAQ-based proteomic technique is reliable for identifying and quantifying a large number of cotton root proteins. qRT-PCR was used to study the gene expression levels of five above-mentioned proteins, four patterns are consistent with those of induced protein. These results showed that cotton’s proteome to NaCl stress is complex, and that the comparative protein profiles of roots under salinity vs control improve the understanding of the molecular mechanisms involved in the tolerance of plants to salt stress. It provides a good starting point for further functional elucidation of these DEPs using genetic and/or other approaches, and thereby candidate genes for genetic engineering to improve crop salt tolerance.

  6. Relationship between potassium fertilization and nitrogen metabolism in the leaf subtending the cotton (Gossypium hirsutum L.) boll during the boll development stage.

    Science.gov (United States)

    Hu, Wei; Zhao, Wenqing; Yang, Jiashuo; Oosterhuis, Derrick M; Loka, Dimitra A; Zhou, Zhiguo

    2016-04-01

    The nitrogen (N) metabolism of the leaf subtending the cotton boll (LSCB) was studied with two cotton (Gossypium hirsutum L.) cultivars (Simian 3, low-K tolerant; Siza 3, low-K sensitive) under three levels of potassium (K) fertilization (K0: 0 g K2O plant(-1), K1: 4.5 K2O plant(-1) and K2: 9.0 g K2O plant(-1)). The results showed that total dry matter increased by 13.1-27.4% and 11.2-18.5% under K supply for Simian 3 and Siza 3. Boll biomass and boll weight also increased significantly in K1 and K2 treatments. Leaf K content, leaf N content and nitrate (NO3(-)) content increased with increasing K rates, and leaf N content or NO3(-) content had a significant positive correlation with leaf K content. Free amino acid content increased in the K0 treatment for both cultivars, due to increased protein degradation caused by higher protease and peptidase activities, resulting in lower protein content in the K0 treatment. The critical leaf K content for free amino acid and soluble protein content were 14 mg g(-1) and 15 mg g(-1) in Simian 3, and 17 mg g(-1) and 18 mg g(-1) in Siza 3, respectively. Nitrate reductase (NR), glutamic-oxaloace transaminase (GOT) and glutamic-pyruvic transaminase (GPT) activities increased in the K1 and K2 treatments for both cultivars, while glutamine synthetase (GS) and glutamate synthase (GOGAT) activities increased under K supply treatments only for Siza 3, and were not affected in Simian 3, indicating that this was the primary difference in nitrogen-metabolizing enzymes activities for the two cultivars with different sensitivity to low-K.

  7. Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium

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    Mittler Ron

    2009-08-01

    Full Text Available Abstract Background Reactive oxygen species (ROS play a prominent role in signal transduction and cellular homeostasis in plants. However, imbalances between generation and elimination of ROS can give rise to oxidative stress in growing cells. Because ROS are important to cell growth, ROS modulation could be responsive to natural or human-mediated selection pressure in plants. To study the evolution of oxidative stress related genes in a single plant cell, we conducted comparative expression profiling analyses of the elongated seed trichomes ("fibers" of cotton (Gossypium, using a phylogenetic approach. Results We measured expression changes during diploid progenitor species divergence, allopolyploid formation and parallel domestication of diploid and allopolyploid species, using a microarray platform that interrogates 42,429 unigenes. The distribution of differentially expressed genes in progenitor diploid species revealed significant up-regulation of ROS scavenging and potential signaling processes in domesticated G. arboreum. Similarly, in two independently domesticated allopolyploid species (G. barbadense and G. hirsutum antioxidant genes were substantially up-regulated in comparison to antecedent wild forms. In contrast, analyses of three wild allopolyploid species indicate that genomic merger and ancient allopolyploid formation had no significant influences on regulation of ROS related genes. Remarkably, many of the ROS-related processes diagnosed as possible targets of selection were shared among diploid and allopolyploid cultigens, but involved different sets of antioxidant genes. Conclusion Our data suggests that parallel human selection for enhanced fiber growth in several geographically widely dispersed species of domesticated cotton resulted in similar and overlapping metabolic transformations of the manner in which cellular redox levels have become modulated.

  8. Genetic Linkage Analysis of the Natural Colored Fiber and Fuzzless Traits in Cotton

    Institute of Scientific and Technical Information of China (English)

    LI Fu-zhen; QIU Xin-mian; WANG Ju-qin; LU Yan-tin; BAO Li-sheng

    2008-01-01

    @@ Genetic linkage relationship of the natural colored fiber and six fuzzless seed germplasms in obsolete backgrounds of Gossypium hirsutum (AD genome) and G.barbadense were analyzed in the past two years.Three lines of natural brown fiber that were controlled by single dominant genes and two lines of green fiber controlled by another single dominant gene.

  9. Cotton GhACT1 Gene Is Preferentially Expressed in Fiber and Required for Fiber Elongation%棉纤维发育优势表达及伸长必需的基因GhACT1

    Institute of Scientific and Technical Information of China (English)

    Xue-bao LI; Lin CAI; Xiao-ping FAN; Ning-hui CHEN; Jian-wei LIU; Wei-cai YANG

    2002-01-01

    @@ Each fiber of cotton (Gossypium hirsutum) is a single epidermal cell that rapidly elongates to 2.5 ~3.0 cm from ovule surface within about 16days after anthesis. A large number of genes are required for fiber differentiation and development, but it is unknown how these genes control and regulate the process of fiber development.

  10. Elargissement de la base génétique de la principale espèce de cotonnier cultivé Gossypium hirsutum L. par la création et l'exploitation de lignées monosomiques d'addition

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    Sarr D.

    2009-01-01

    Full Text Available Genetic broadening of the main cultivated cotton species Gossypium hirsutum L. by creation and exploitation of monosomic alien addition lines. The genus Gossypium is composed of about forty wild diploïd species that constitute an important reservoir of interesting genes for the genetic improvement of Gossypium hirsutum L., the main cultivated cotton species. Creation of monosomic alien addition lines (MAAL, made up of plants having in addition to the chromosome set of the cultivated species one wild species' supernumerary chromosome, is an interesting way to exploit this diversity. Numerous constraints limit the creation of MAAL, among them the most important is doubtless the production of first generation derivatives from pentaploids obtained by backcrossing G. hirsutum with bispecific hexaploid hybrids made of the cultivated species tetraploid genome and the genome of a donor diploid species. Raising this impediment by appropriate techniques allows to develop MAAL offering the possibility to introgress finely traits of interest from diploid species and to better understand genomic relationships between species in the genus Gossypium. Identification and exploitation of these MAAL have been for a long time based on not very reliable morphological characteristics and on the use of classical cytogenetic techniques, very heavy to implement. Nowadays, the exploitation of MAAL benefits from the great advances registered in molecular biology through the development of DNA markers and molecular cytogenetics. These progresses make of MAAL a promising way for the genetic improvement of the main cultivated cotton species.

  11. Generation and analysis of a large-scale expressed sequence Tag database from a full-length enriched cDNA library of developing leaves of Gossypium hirsutum L.

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    Min Lin

    Full Text Available BACKGROUND: Cotton (Gossypium hirsutum L. is one of the world's most economically-important crops. However, its entire genome has not been sequenced, and limited resources are available in GenBank for understanding the molecular mechanisms underlying leaf development and senescence. METHODOLOGY/PRINCIPAL FINDINGS: In this study, 9,874 high-quality ESTs were generated from a normalized, full-length cDNA library derived from pooled RNA isolated from throughout leaf development during the plant blooming stage. After clustering and assembly of these ESTs, 5,191 unique sequences, representative 1,652 contigs and 3,539 singletons, were obtained. The average unique sequence length was 682 bp. Annotation of these unique sequences revealed that 84.4% showed significant homology to sequences in the NCBI non-redundant protein database, and 57.3% had significant hits to known proteins in the Swiss-Prot database. Comparative analysis indicated that our library added 2,400 ESTs and 991 unique sequences to those known for cotton. The unigenes were functionally characterized by gene ontology annotation. We identified 1,339 and 200 unigenes as potential leaf senescence-related genes and transcription factors, respectively. Moreover, nine genes related to leaf senescence and eleven MYB transcription factors were randomly selected for quantitative real-time PCR (qRT-PCR, which revealed that these genes were regulated differentially during senescence. The qRT-PCR for three GhYLSs revealed that these genes express express preferentially in senescent leaves. CONCLUSIONS/SIGNIFICANCE: These EST resources will provide valuable sequence information for gene expression profiling analyses and functional genomics studies to elucidate their roles, as well as for studying the mechanisms of leaf development and senescence in cotton and discovering candidate genes related to important agronomic traits of cotton. These data will also facilitate future whole-genome sequence

  12. Assessment of Tolerance Level of some Cotton (Gossypium hirsutum L. Varieties against Verticillium wilt (Verticillium dahliae Kleb. Disease

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    Emine KARADEMIR

    2010-06-01

    Full Text Available The objective of this study was to assess the tolerance level of some cotton varieties against Verticillium wilt (Verticillium dahliae Kleb. disease. Verticillium wilt is one of the major constraint diseases of cotton production worldwide and also in Turkey. The study was carried out at the Southeastern Anatolia Agricultural Research Institute’s naturally infected experimental area during 2004-2006. In this study, 10 different commercial cotton varieties were used as plant material. The experimental design was a randomized complete-block with four replications. During the cotton growing season, foliar disease index (FDI, vascular disease index (VDI and vascular disease rate (VDR were observed in addition to seed cotton yield and some fiber quality characteristics. According to the results, it was determined that with regards to FDI, VDI and VDR, the most tolerant varieties were ‘GW-Teks’, ‘GW-Golda’ and ‘Carmen’, while the most sensitive varieties were ‘Maraş 92’, ‘Sayar 314’ and ‘Stoneville 453’. The other varieties had moderate tolerance levels. The highest seed cotton yield and lint yield were obtained from ‘DP-Deltaopal’ and ‘Stoneville 453’. These results showed that some sensitive varieties had high yield; the reason for this situation may be related with early or late occurrence of the disease. The result of this study indicated that ‘GW-Teks’, ‘GW-Golda’ and ‘Carmen’ varieties must be preferred for infected areas; on the other hand, ‘DP-Deltaopal’ and ‘Stoneville 453’ can be recommended and grown in uninfected areas. Additionally, ‘Carmen’, ‘GW-Teks’ and ‘GW-Golda’ varieties can be used as material for improving disease resistance in cotton breeding programs.

  13. Temperature dependence of violaxanthin de-epoxidation and non-photochemical fluorescence quenching in intact leaves of Gossypium hirsutum L. and Malva parviflora L.

    Science.gov (United States)

    Bilger, W; Björkman, O

    1991-05-01

    The temperature dependence of the rate of de-epoxidation of violaxanthin to zeaxanthin was determined in leaves of chilling-sensitive Gossypium hirsutum L. (cotton) and chilling-resistant Malva parviflora L. by measurements of the increase in absorbance at 505 nm (ΔA 505) and in the contents of antheraxanthin and zeaxanthin that occur upon exposure of predarkened leaves to excessive light. A linear relationship between ΔA 505 and the decrease in the epoxidation state of the xanthophyll-cycle pigment pool was obtained over the range 10-40° C. The maximal rate of de-epoxidation was strongly temperature dependent; Q10 measured around the temperature at which the leaf had developed was 2.1-2.3 in both species. In field-grown Malva the rate of de-epoxidation at any given measurement temperature was two to three times higher in leaves developed at a relatively low temperature in the early spring than in those developed in summer. Q10 measured around 15° C was in the range 2.2-2.6 in both kinds of Malva leaves, whereas it was as high as 4.6 in cotton leaves developed at a daytime temperature of 30° C. Whereas the maximum (initial) rate of de-epoxidation showed a strong decrease with decreased temperature the degree of de-epoxidation reached in cotton leaves after a 1-2 · h exposure to a constant photon flux density increased with decreased temperature as the rate of photosynthesis decrease. The zeaxanthin content rose from 2 mmol · (mol chlorophyll)(-1) at 30° C to 61 mmol · (mol Chl)(-1) at 10° C, corresponding to a de-epoxidation of 70% of the violaxanthin pool at 10° C. The degree of de-epoxidation at each temperature was clearly related to the amount of excessive light present at that temperature. The relationship between non-photochemical quenching of chlorophyll fluorescence and zeaxanthin formation at different temperatures was determined for both untreated control leaves and for leaves in which zeaxanthin formation was prevented by dithiothreitol

  14. Genome-wide comparative analysis of NBS-encoding genes in four Gossypium species

    Science.gov (United States)

    Nucleotide binding site (NBS) genes encode a large family of disease resistance (R) proteins in plants. The availability of genomic data of the two diploid cotton species, Gossypium arboreum and Gossypium raimondii, and the two allotetraploid cotton species, Gossypium hirsutum (TM-1) and Gossypium ...

  15. Isolation of a cotton CAP gene: a homologue of adenylyl cyclase-associated protein highly expressed during fiber elongation.

    Science.gov (United States)

    Kawai, M; Aotsuka, S; Uchimiya, H

    1998-12-01

    The cDNA encoding CAP (adenylyl cyclase-associated protein) was isolated from a cotton (Gossypium hirsutum) fiber cDNA library. The cDNA (GhCAP) contained an open reading frame that encoded 471 amino acid residues. RNA blot analysis showed that the cotton CAP gene was expressed mainly in young fibers.

  16. Cu/Zn superoxide dismutases in developing cotton fibers

    Science.gov (United States)

    Hydrogen peroxide (H2O2) and other reactive oxygen species (ROS) are important signaling molecules in diverse physiological processes. Previously, we discovered superoxide dismutase (SOD) activity in extracellular protein preparations from fiber-bearing cotton (Gossypium hirsutum L.) seeds. We sho...

  17. GhDET2,a Steroid 5alpha-reductase,Plays an Important Role in Cotton Fiber Cell Initiation and Elongation

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Cotton(Gossypium hirsutum L.) fibers,one of the most important natural raw materials for the textile industry,are highly elongated trichomes from epidermal cells of cotton ovules.Among the longest plant cells ever characterized,cotton fiber is an ideal system for studying plant cell elongation.

  18. DNA sequences and composition from 12 BAC clones-derived MUSB SSR markers mapped to cotton (Gossypium Hirsutum L. x G. Barbadense L.)chromosomes 11 and 21

    Science.gov (United States)

    To discover resistance (R) and/or pathogen-induced (PR) genes involved in disease response, 12 bacterial artificial chromosome (BAC) clones from cv. Acala Maxxa (G. hirsutum) were sequenced at the Clemson University, Genomics Institute, Clemson, SC. These BACs derived MUSB single sequence repeat (SS...

  19. Biological control of Cucurbita pepo var texana (Texas gourd) in cotton (Gossypium hirsutum) with the fungus Fusarium solani f sp Cucurbitae

    Science.gov (United States)

    Experiments were conducted to evaluate various formulations and application methods of the fungus Fusarium solani f. sp. cucurbitae (FSC) for controlling Texas gourd (Cucurbita pepo var. texana) in cotton (Gosssypium hirsutum). In greenhouse tests, Texas gourd was controlled 93% and 96%, respective...

  20. Selección y caracterización de rizobacterias promotoras de crecimiento vegetal (RPCV asociadas al cultivo de algodón (Gossypium hirsutum

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    Andrés Guzmán

    2012-04-01

    Full Text Available Normal 0 21 false false false ES-CO X-NONE X-NONE MicrosoftInternetExplorer4 Título en ingles: Selection and characterization of plant growth promoting rhizobacteria (PGPR’s associated with cotton crop (Gossypium hirsutum Resumen: Como parte de las estrategias de una agricultura sostenible, se hace necesario disminuir el uso de fertilizantes nitrogenados de síntesis, mediante la utilización de los biofertilizantes. En particular, los géneros Azotobacter y Azospirillum son utilizados como agentes promotores de crecimiento vegetal debido a su capacidad para fijar nitrógeno atmosférico y producir hormonas de tipo indólico. Por tal razón, en este estudio se aislaron bacterias diazotróficas de los géneros Azotobacter y Azospirillum a partir de la rizósfera de cultivos de algodón en el Espinal (Tolima. Las poblaciones microbianas se caracterizaron fenotípicamente en los medios de cultivo semiespecíficos: Ashby y LG (Azotobacter sp. y NFb, LGI y Batata (Azospirillum sp.. La promoción de crecimiento vegetal se determinó mediante la actividad de la enzima nitrogenasa por medio de la técnica de reducción de acetileno y producción de índoles por el método colorimétrico de Salkowsky. Se obtuvieron 9 aislamientos tentativos de Azotobacter sp. y 4 de Azospirillum sp. Se presentaron diferencias significativas en la prueba de reducción de acetileno con las cepas presuntivas de Azotobacter sp.: NAT 9 (206.43 nmol C2H2 mL-1.h-1, NAT 4, (292.77 nmol C2H2 mL-1.h-1, y NAT 6 (460.60 nmol C2H2 mL-1.h-1 y en la producción de índoles de las cepas NAT 19 (19.87 μg.mL-1 y NAT 13 (20.08 μg.mL-1. Por su eficiencia in vitro en la promoción de crecimiento vegetal se seleccionaron las cepas NAT9, NAT4, NAT6, NAT19 y NAT13 para ser evaluadas como principio activo en futuros inoculantes para el algodón en esta zona del departamento del Tolima. Palabras clave: fijación biológica de nitrógeno; producción de índoles; promoción del crecimiento

  1. Clustering, haplotype diversity and locations of MIC-3: a unique root-specific defense-related gene family in upland cotton (Gossypium hirsutum L.)

    Science.gov (United States)

    MIC-3-related genes of cotton (Gossypium spp.) were identified and shown to have root-specific expression, associated with pathogen defense-related function and specifically increased expression in root-knot nematode (RKN) resistant plants after nematode infection. Here we cloned and sequenced MIC-...

  2. Linkage disequilibrium based association mapping of fiber quality traits in G. hirsutum L. variety germplasm.

    Science.gov (United States)

    Abdurakhmonov, Ibrokhim Y; Saha, Sukumar; Jenkins, Jonnie N; Buriev, Zabardast T; Shermatov, Shukhrat E; Scheffler, Brain E; Pepper, Alan E; Yu, John Z; Kohel, Russell J; Abdukarimov, Abdusattor

    2009-07-01

    Cotton is the world's leading cash crop, but it lags behind other major crops for marker-assisted breeding due to limited polymorphisms and a genetic bottleneck through historic domestication. This underlies a need for characterization, tagging, and utilization of existing natural polymorphisms in cotton germplasm collections. Here we report genetic diversity, population characteristics, the extent of linkage disequilibrium (LD), and association mapping of fiber quality traits using 202 microsatellite marker primer pairs in 335 G. hirsutum germplasm grown in two diverse environments, Uzbekistan and Mexico. At the significance threshold (r (2) >or= 0.1), a genome-wide average of LD extended up to genetic distance of 25 cM in assayed cotton variety accessions. Genome wide LD at r (2) >or= 0.2 was reduced to approximately 5-6 cM, providing evidence of the potential for association mapping of agronomically important traits in cotton. Results suggest linkage, selection, inbreeding, population stratification, and genetic drift as the potential LD-generating factors in cotton. In two environments, an average of ~20 SSR markers was associated with each main fiber quality traits using a unified mixed liner model (MLM) incorporating population structure and kinship. These MLM-derived significant associations were confirmed in general linear model and structured association test, accounting for population structure and permutation-based multiple testing. Several common markers, showing the significant associations in both Uzbekistan and Mexican environments, were determined. Between 7 and 43% of the MLM-derived significant associations were supported by a minimum Bayes factor at 'moderate to strong' and 'strong to very strong' evidence levels, suggesting their usefulness for marker-assisted breeding programs and overall effectiveness of association mapping using cotton germplasm resources.

  3. The induction of microsomal NADPH:cytochrome P450 and NADH:cytochrome b(5) reductases by long-term salt treatment of cotton (Gossypium hirsutum L.) and bean (Phaseolus vulgaris L.) plants.

    Science.gov (United States)

    Brankova, Liliana; Ivanov, Sergei; Alexieva, Vera

    2007-09-01

    We studied the effect of salinity on the activity of microsomal NADPH:cytochrome P450 reductase (CPR, EC 1.6.2.4) and NADH:ferricytochrome b(5) oxidoreductase (B5R, EC 1.6.2.2) in two dicotyledonous plant species differing in their sensitivity to salt, cotton (Gossypium hirsutum L. cv Ogosta) and common bean (Phaseolus vulgaris L. cv Dobrujanski 7). A significant inhibition of fresh weight of salt-treated bean plants was observed, while cotton was affected to a much lesser degree. NaCl application resulted in a significant increase in the activity of both reductases, but was more pronounced in salt-tolerant cotton. We suppose that alterations in B5R and CPR activities may be targeted to the maintenance of membrane lipids. Most probably, plants use both enzymes (B5R and CPR) and their respective electron donors (NADH and NADPH) to reduce cytochrome b(5), which can donate reducing equivalents to a series of lipid-modification reactions such as desaturation and hydroxylation.

  4. Quantitative analysis and QTL mapping for agronomic and fiber traits in an RI population of Upland cotton

    Science.gov (United States)

    In this present study, we evaluated a RI population including 188 RI lines developed from 94 F2-derived families and their two parental lines, ‘HS 46’ and MARCABUCAG8US-1-88 (Gossypium hirsutum L.), at Mississippi State, MS, for two years. Fourteen agronomic and fiber traits were measured. One hundr...

  5. Agrobacterium-meditated Genetic Transformation of an Upland Cotton (Gossypium hirsutum cv Coker 310) Using a Novel Bt Gene Cry 2Ac

    Institute of Scientific and Technical Information of China (English)

    THIRUVENGADAM V; RASHMI J A; UDYASURIAN V; BALASUBRAMANIAN P; RAVEENDRAN T S

    2008-01-01

    @@ The development of transgenic cotton varieties resistant to bollworms has been a major success of applying plant genetic engineering technology to agriculture,evidenced by phenomenal increase in the cultivable area under (B.thuringiensis) Bt cotton in recent years worldwide.Of late,there are reports of insects developing resistance against the most commonly used Bt toxin CrylAc.Hence,there is an urgent need to broaden the source of resistance by employing new genes in order to reduce the chances of insects developing Bt resistance.Keeping this objective in view,cotton (Gossypium hirsuturn cv Coker 310) plants expressing a novel insecticidal crystal protein Cry2Ac were developed in the present study.

  6. Expression Profile Analysis of Genes Involved in Brassinosteroid Biosynthesis Pathway in Cotton Fiber Development

    Institute of Scientific and Technical Information of China (English)

    LUO Ming; XIAO Zhong-yi; TAN Kun-ling; HU Ming-yu; LIAO Peng

    2008-01-01

    @@ Cotton (Gossypium hirsutum L.) is the leading fiber crop and one of the mainstays of the economy in the world.Cotton fibers,as the main product of cotton plants,are unicellular,linear structures derived from the epidermis of the ovule.Cotton fiber development consists of four discrete yet overlapping developmental stages: initiation,elongation,secondary wall deposition,and maturation.

  7. Clustering, haplotype diversity and locations of MIC-3: a unique root-specific defense-related gene family in Upland cotton (Gossypium hirsutum L.).

    Science.gov (United States)

    Buriev, Zabardast T; Saha, Sukumar; Abdurakhmonov, Ibrokhim Y; Jenkins, Johnie N; Abdukarimov, Abdusattor; Scheffler, Brian E; Stelly, David M

    2010-02-01

    MIC-3 is a recently identified gene family shown to exhibit increased root-specific expression following nematode infection of cotton plants that are resistant to root-knot nematode. Here, we cloned and sequenced MIC-3 genes from selected diploid and tetraploid cotton species to reveal sequence differences at the molecular level and identify chromosomal locations of MIC-3 genes in Gossypium species. Detailed sequence analysis and phylogenetic clustering of MIC-3 genes indicated the presence of multiple MIC-3 gene members in Gossypium species. Haplotypes of a MIC-3 gene family member were discovered by comparative analysis among consensus sequences across genotypes within an individual clade in the phylogram to overcome the problem of duplicated loci in the tetraploid cotton. Deficiency tests of the SNPs delimited six A(t)-genome members of the MIC-3 family clustered to chromosome arm 4sh, and one D(t)-genome member to chromosome 19. Clustering was confirmed by long-PCR amplification of the intergenic regions using A(t)-genome-specific MIC-3 primer pairs. The clustered distribution may have been favored by selection for responsiveness to evolving disease and/or pest pressures, because large variants of the MIC-3 gene family may have been recovered from small physical areas by recombination. This could give a buffer against selection pressure from a broad range of pest and pathogens in the future. To our knowledge, these are the first results on the evolution of clustering and genome-specific haplotype members of a unique cotton gene family associated with resistant response against a major pathogen.

  8. Transcriptome Profiling and Analysis during Cotton Fiber Cell Development

    Institute of Scientific and Technical Information of China (English)

    ZHU Yu-xian

    2008-01-01

    @@ In this project,we aim to elucidate the molecular mechanism controlling initiation and elongation of tetraploid Gossypium hirsutum fiber cells by setting up a high throughput custom-designed cDNA microarray and a systematic gene expression profiling during cotton fiber development.We first constructed a microarray consisting of more than 28,000 cotton UniESTs that we obtained by deep-sequencing of several cotton ovule cDNA libraries.

  9. A cotton (Gossypium hirsutum) DRE-binding transcription factor gene, GhDREB, confers enhanced tolerance to drought, high salt, and freezing stresses in transgenic wheat.

    Science.gov (United States)

    Gao, Shi-Qing; Chen, Ming; Xia, Lian-Qin; Xiu, Hui-Jun; Xu, Zhao-Shi; Li, Lian-Cheng; Zhao, Chang-Ping; Cheng, Xian-Guo; Ma, You-Zhi

    2009-02-01

    A cotton (G. hirsutum L.) dehydration responsive element binding protein gene, GhDREB, which encodes a 153 amino acid protein containing a conserved AP2/EREBP domain, was isolated from the cDNA library of cotton cv. Simian 3 by a yeast one-hybrid system. RNA blot analysis showed that the GhDREB gene was induced in cotton seedlings by drought, high salt and cold stresses. An electrophoretic mobility shift assay (EMSA) indicated that the GhDREB protein bound specifically to the DRE core element (A/GCCGAC) in vitro. Two expression vectors containing the GhDREB gene with either of the Ubiqutin or rd29A promoters were constructed and transferred into wheat (Triticum aestivum L.) by bombardment. Fifty-eight Ubi::GhDREB and 17 rd29A::GhDREB T(0) plants of Yangmai (36 plants) and Lumai (39 plants) were identified by PCR analysis, respectively. Southern blot and RT-PCR analyses showed that two or three copies of the GhDREB were integrated into the Yangmai 10 genome and were expressed at the transcriptional level, and three or four copies were integrated into the Lumai 23 genome. Functional analysis indicated that the transgenic plants had improved tolerance to drought, high salt, and freezing stresses through accumulating higher levels of soluble sugar and chlorophyll in leaves after stress treatments. No phenotype differences were observed between transgenic plants and their non-transgenic controls. These results indicated that GhDREB might be useful in improving wheat stress tolerance through genetic engineering.

  10. Correlation of Inhibitor Proteinase in Varieties and Lines of Cotton (Gossypium hirsutum L.) to Different Geographic Population of Verticillium dathliae Klebahn

    Institute of Scientific and Technical Information of China (English)

    KIM Robert; AMANTURDIEV Alisher; MEJLUMYAN Larisa; BABAYEV Yashen; KIM Michael

    2008-01-01

    @@ Breeding for wilt resistance and its theoretical basis are primarily responsible for increases in cotton yield and fiber quality.Breeding for immunity is the most efficient method in our struggle with infectious diseases.

  11. Correlation of Inhibitor Proteinase in Varieties and Lines of Cotton(Gossypium hirsutum L.) to Different Geographic Population of Verticillium dathliae Klebahn

    Institute of Scientific and Technical Information of China (English)

    KIM; Robert; AMANTURDIEV; Alisher; MEJLUMYAN; Larisa; BABAYEV; Yashen; KIM; Michael

    2008-01-01

    Breeding for wilt resistance and its theoretical basis are primarily responsible for increases in cotton yield and fiber quality. Breeding for immunity is the most efficient method in our struggle with infectious diseases.

  12. Cloning and Function Characteristic of GhDWF4,an Ortholog of Arabidopsis DWF4 from Upland Cotton(Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    As one of the longest cells characterized in plant kingdom,cotton fibers were regarded as an ideal material for studying plant cell growth and development.In recent years,several reports revealed that

  13. 棉花微管结合蛋白基因GhCLASP1的克隆与表达分析%Cloning and Expression Analysis of GhCLASP1 Gene in Gossypium hirsutum L.

    Institute of Scientific and Technical Information of China (English)

    朱守鸿; 薛飞; 赵兰杰; 刘永昌; 李艳军; 熊显鹏; 孙杰

    2015-01-01

    CLASP蛋白(CLASPs)是一种能够特异地与微管结合,参与调节微管结构与功能的微管结合蛋白(MAPs),在植物细胞形成、细胞伸长等方面起着关键作用.该研究利用电子克隆结合RT-PCR技术从陆地棉(Gossypium hirsutumL.)中克隆获得1个CLASP基因,命名为GhCLASP1(NCBI登录号为KP742966).序列分析显示,GhCLASP1属于CLASP基因家族,开放阅读框长度为4 188 bp,编码含1 395个氨基酸残基的蛋白;Gh-CLASP1蛋白含有1个HEAT重复结构域和2个CLASP-N端结构域.进化分析表明,GhCLASP1与可可树(Theobroma cacao)CLASP蛋白的亲缘关系最近.qRT-PCR分析表明,GhCLASP1在棉花的根、茎、叶、花及纤维发育的不同时期均有表达,且GhCLASP1基因表达量最大值出现在纤维发育次生壁加厚期(开花后27 d),推测GhCLASP1基因可能对棉花纤维次生壁的形成起着重要的作用.利用本氏烟草(Nicotiana benthamiana)叶片瞬时表达系统对GhCLASP1基因编码的蛋白进行亚细胞定位结果显示,GhCLASP1蛋白定位在细胞膜上.上述结果为进一步研究CLASP基因在棉花中的功能奠定了基础.

  14. Mapping of QTL for Fiber Length Using Interspecific Gossypium hirsutum × G.barbadense F_2 Population

    Institute of Scientific and Technical Information of China (English)

    PREETHA; S; RAVEENDRAN; T; S

    2008-01-01

    Cotton occupies a pre-eminent place among cash crops as it guides the destiny of a large section of the farming community as well as that of a flourishing textile industry.As the yarn manufacturing industry has undergone a technological revolution,more emphasis is given to quality of the raw material

  15. Genetical Genomics Dissection of Cotton Fiber Quality

    Institute of Scientific and Technical Information of China (English)

    LACAPE J M; JACOBS J; LLEWELLYN D

    2008-01-01

    @@ Cotton fiber is a commodity of key economic importance in both developed and developing countries.The two cultivated species,Gossypium hirsutum and G.barbadense,are tetraploid (2n=4x=52,2.3 Gb).Cotton fibers are single-celled trichomes of the outermost epidermal layer of the ovule and elongate extensively to 25-50 mm.The final quality of the fiber results from complex developmental processes and improvement of cotton fiber quality remains a challenge for many research groups worldwide.

  16. Seed cotton yield, ionic and quality attributes of two cotton (Gossypium hirsutum L. varieties as influenced by various rates of K and Na under field conditions

    Directory of Open Access Journals (Sweden)

    Muhammad Sohail

    2011-11-01

    Full Text Available Cotton is more sensitive to low K availability than most other major field crops, and often shows symptoms of K deficiency in soils not considered K deficient. Field investigation was conducted at Sahiwal to study the effect of different rates of K and Na application on seed cotton yield, ionic ratio and quality characteristics of two cotton varieties. Ten soil K: Na ratios were developed after considering indigenous K, Na status in soil. The treatments of K+Na in kg ha-1 to give K:Na ratios were as: 210+ 60 (3.5:1 i.e. control, 225 + 60 (3.75:1, 240 + 60 (4:1, 255 + 60 (4.25:1, 270 + 60 (4.5:1, 210 + 75 (2.8:1, 225 + 75 (3:1, 240 + 75 (3.2:1, 255 + 75 (3.4:1 and 270 + 75 (3.6:1. Control treatment represented indigenous K, Na status of soil. The experiment continued until maturity. Maximum seed cotton yield of NIBGE-2 was observed at K: Na ratio of 3.6:1. Variety NIBGE-2 manifested greater seed cotton yield than MNH-786. Leaf K: Na ratio of two cotton varieties differed significantly (p < 0.01 due to varieties, rates of K and Na and their interaction. Variety NIBGE-2 maintained higher K: Na ratio than MNH-786 and manifested good fiber quality. There was significant relationship (R2 = 0.55, n = 10 between K: Na ratio and fiber length and significant relationship (R2 = 0.65, n = 10 between K concentration and fiber length for NIBGE-2. There was also significant relationship (R2 = 0.91, 0.78, n = 10 between boll number and seed cotton yield for both varieties. The increase in yield was attributed to increased boll weight.

  17. Transcriptomic analysis of fiber strength in upland cotton chromosome introgression lines carrying different Gossypium barbadense chromosomal segments.

    Science.gov (United States)

    Fang, Lei; Tian, Ruiping; Chen, Jiedan; Wang, Sen; Li, Xinghe; Wang, Peng; Zhang, Tianzhen

    2014-01-01

    Fiber strength is the key trait that determines fiber quality in cotton, and it is closely related to secondary cell wall synthesis. To understand the mechanism underlying fiber strength, we compared fiber transcriptomes from different G. barbadense chromosome introgression lines (CSILs) that had higher fiber strengths than their recipient, G. hirsutum acc. TM-1. A total of 18,288 differentially expressed genes (DEGs) were detected between CSIL-35431 and CSIL-31010, two CSILs with stronger fiber and TM-1 during secondary cell wall synthesis. Functional classification and enrichment analysis revealed that these DEGs were enriched for secondary cell wall biogenesis, glucuronoxylan biosynthesis, cellulose biosynthesis, sugar-mediated signaling pathways, and fatty acid biosynthesis. Pathway analysis showed that these DEGs participated in starch and sucrose metabolism (328 genes), glycolysis/gluconeogenesis (122 genes), phenylpropanoid biosynthesis (101 genes), and oxidative phosphorylation (87 genes), etc. Moreover, the expression of MYB- and NAC-type transcription factor genes were also dramatically different between the CSILs and TM-1. Being different to those of CSIL-31134, CSIL-35431 and CSIL-31010, there were many genes for fatty acid degradation and biosynthesis, and also for carbohydrate metabolism that were down-regulated in CSIL-35368. Metabolic pathway analysis in the CSILs showed that different pathways were changed, and some changes at the same developmental stage in some pathways. Our results extended our understanding that carbonhydrate metabolic pathway and secondary cell wall biosynthesis can affect the fiber strength and suggested more genes and/or pathways be related to complex fiber strength formation process.

  18. Transcriptomic analysis of fiber strength in upland cotton chromosome introgression lines carrying different Gossypium barbadense chromosomal segments.

    Directory of Open Access Journals (Sweden)

    Lei Fang

    Full Text Available Fiber strength is the key trait that determines fiber quality in cotton, and it is closely related to secondary cell wall synthesis. To understand the mechanism underlying fiber strength, we compared fiber transcriptomes from different G. barbadense chromosome introgression lines (CSILs that had higher fiber strengths than their recipient, G. hirsutum acc. TM-1. A total of 18,288 differentially expressed genes (DEGs were detected between CSIL-35431 and CSIL-31010, two CSILs with stronger fiber and TM-1 during secondary cell wall synthesis. Functional classification and enrichment analysis revealed that these DEGs were enriched for secondary cell wall biogenesis, glucuronoxylan biosynthesis, cellulose biosynthesis, sugar-mediated signaling pathways, and fatty acid biosynthesis. Pathway analysis showed that these DEGs participated in starch and sucrose metabolism (328 genes, glycolysis/gluconeogenesis (122 genes, phenylpropanoid biosynthesis (101 genes, and oxidative phosphorylation (87 genes, etc. Moreover, the expression of MYB- and NAC-type transcription factor genes were also dramatically different between the CSILs and TM-1. Being different to those of CSIL-31134, CSIL-35431 and CSIL-31010, there were many genes for fatty acid degradation and biosynthesis, and also for carbohydrate metabolism that were down-regulated in CSIL-35368. Metabolic pathway analysis in the CSILs showed that different pathways were changed, and some changes at the same developmental stage in some pathways. Our results extended our understanding that carbonhydrate metabolic pathway and secondary cell wall biosynthesis can affect the fiber strength and suggested more genes and/or pathways be related to complex fiber strength formation process.

  19. Cottonseed protein, oil, and mineral status in near-isogenic Gossypium hirsutum cotton lines expressing fuzzy/linted and fuzzless/linted seed phenotypes under field conditions.

    Science.gov (United States)

    Bellaloui, Nacer; Stetina, Salliana R; Turley, Rickie B

    2015-01-01

    Cotton is an important crop in the world and is a major source of oil for human consumption and cotton meal for livestock. Cottonseed nutrition (seed composition: protein, oil, and minerals) determines the quality of seeds. Therefore, maintaining optimum levels of cottonseed nutrition is critical. Physiological and genetic mechanisms controlling the levels of these constituents in cottonseed are still largely unknown. Our previous research conducted under greenhouse conditions showed that seed and leaf nutrition differed between fuzzless and fuzzy seed isolines. Therefore, the objective of this research was to investigate the seed fuzz phenotype (trait) effects on seed protein, oil, N, C, S, and minerals in five sets of near-isogenic mutant cotton lines for seed fuzz in a 2-year experiment under field condition to evaluate the stability of the effect of the trait on seed nutrition. The isolines (genotypes) in each set differ for the seed fuzz trait (fuzzless/linted seed line, N lines, and fuzzy/linted seed line, F lines). Results showed that seed protein was higher in the fuzzy genotype in all sets, but seed oil was higher in fuzzless genotype in all sets. The concentrations of seed Ca and C were higher in all fuzzless genotypes, but N, S, B, Fe, and Zn were higher in most of the fuzzy genotypes. Generally, minerals were higher in leaves of F lines, suggesting the translocation of minerals from leaves to seeds was limited. The research demonstrated that fiber development could be involved in cottonseed composition. This may be due to the involvement of fiber development in carbon and nitrogen metabolism, and the mobility of nutrients from leaves (source) to seed (sink). This information is beneficial to breeders to consider fuzzless cottonseed for potential protein and oil use and select for higher oil or higher protein content, and to physiologists to further understand the mobility of minerals to increase the quality of cottonseed nutrition for food and feed.

  20. Cottonseed protein, oil, and mineral status in near-isogenic Gossypium hirsutum cotton lines expressing fuzzy/linted and fuzzless/linted seed phenotypes under field conditions

    Directory of Open Access Journals (Sweden)

    Nacer eBellaloui

    2015-03-01

    Full Text Available Cotton is an important crop in the world and is a major source of oil for human consumption and cotton meal for livestock. Cottonseed nutrition (seed composition: protein, oil, and minerals determine the quality of seeds. Therefore, maintaining optimum levels of cottonseed nutrition is critical. Physiological and genetic mechanisms controlling the levels of these constituents in cottonseed are still largely unknown. Our previous research conducted under greenhouse conditions showed that seed and leaf nutrition differed between fuzzless and fuzzy seed isolines. Therefore, the objective of this research was to investigate the seed fuzz phenotype (trait effects on seed protein, oil, N, C, S, and minerals in five sets of near-isogenic mutant cotton lines for seed fuzz in a two-year experiment under field condition to evaluate the stability of the effect of the trait on seed nutrition. The isolines (genotypes in each set differ for the seed fuzz trait (fuzzless/linted seed line, N lines, and fuzzy/linted seed line, F lines. Results showed that seed protein was higher in the fuzzy genotype in all sets, but seed oil was higher in fuzzless genotype in all sets. The concentrations of seed Ca and C were higher in all fuzzless genotypes, but N, S, B, Fe, and Zn were higher in most of the fuzzy genotypes. Generally, minerals were higher in leaves of F lines, suggesting the translocation of minerals from leaves to seeds was limited. The research demonstrated that fiber development could be involved in cottonseed composition. This may be due to the involvement of fiber development in carbon and nitrogen metabolism, and the mobility of nutrients from leaves (source to seed (sink. This information is beneficial to breeders to consider fuzzless cottonseed for potential protein and oil use and select for higher oil or higher protein content, and to physiologists to further understand the mobility of minerals to increase the quality of cottonseed nutrition for

  1. [Major-polygene effect analysis of super quality fiber properties in upland cotton (G. hirsutum L.)].

    Science.gov (United States)

    Yuan, You-Lu; Zhang, Tian-Zhen; Guo, Wang-Zhen; Yu, John; Kohel, Russell J

    2002-09-01

    The modern textile industry depends on the improvement of fiber quality, especially strength to meet the needs of higher spinning speed. Inheritance of super quality fiber properties in Upland cotton was conducted in the present paper. P1, P2, F1, B1, B2 and F2 of eight crosses from five parents with different fiber strength, i.e. 7235 x TM1, TM1 x 7235, HS42 x TM1, PD69 x TM1, MD51 x TM1, 7235 x HS42, 7235 x PD69 and HS42 x PD69, and F2:3 for 7235 x TM1, were used in the study. The materials were planted in Nanjing or Hainan in 1998 and 1999, the individual plant fiber samples were tested with HVI system in Cotton Research Institute of CAAS at Anyang. The segregation analysis methods for major genes plus polygene mixed inheritance model developed by Gai were used to identify the genetic system of fiber qualities. The results from joint analyses of multiple segregating generations as well as single segregating generations, especially for F2:3, showed one major gene plus polygene mixed inheritance model in all fiber quality characters. The heritability values of major gene in F2 of 7235 x TM1 with great parent difference were estimated as 19.6% for fiber strength, 32.0% for micronaire and 13.9% for fiber length, but little in B1 and B2 for fiber qualities. The fiber length showed high and positive dominant effect, but negative value or zero of major or polygene dominant effects for other fiber qualities. Therefore, Mid-parent value or tendency to lower parent in F1 for most of fiber qualities lead to low selection efficiency, which suggests that molecular assisted selection should be considered at first in the improvement of fiber qualities.

  2. Effects of fuzzless cottonseed phenotype on cottonseed nutrient composition in near isogenic cotton (Gossypium hirsutum L. mutant lines under well-watered and water stress conditions

    Directory of Open Access Journals (Sweden)

    Nacer eBellaloui

    2013-12-01

    Full Text Available There is no information available on the effect of fuzzless seed trait on cottonseed nutrient composition (minerals, N, S, protein, and oil under drought stress. The objective of this research was to investigate the effect of the fuzzless seed trait on cottonseed nutrients using four sets of near-isogenic lines (NILs. Each set consists of two lines that share the same genetic background, but differ in seed fuzziness (fuzzy, F; fuzzless, N. The near isogenic lines will enable us to compare the effect of the trait without confounding the genotypic background effects. We hypothesized that since the fuzzless trait involved in fiber initiation development, and was reported to be involved in biochemical, molecular, and genetic processes, this trait may also alter cottonseed nutrient composition. Results showed that NIL sets accumulated different levels of minerals in seeds and leaves, and the fuzzless trait (NF in most of the lines altered seed and leaf mineral accumulations when compared with fuzzy lines (FN or the control line. For example, K, P, Mg, Cu, and Na concentrations in seeds were higher in MD N and STV N than in their equivalent MD F and STV F lines. Leaf concentrations of Ca, K, Mg, S, B, Cu, and Fe in MD N lines were higher than MD F line. Lower levels of nutrients in seeds and leaves were observed under water stress conditions, especially Ca, Mg, N, and B in seeds. Generally and with few exceptions, seed protein was higher in fuzzy lines that in fuzzless lines; however, seed oil was higher in fuzzless lines than in fuzzy lines. Our research demonstrated that fuzzless trait altered the composition and level of nutrients in seed and leaves in well watered and water stressed plants. Differences in protein and oil between fuzzy and fuzzless seeds may indicate alteration in nitrogen and carbon fixation and metabolism. The differential accumulation of seed nutrients in this germplasm could be used by cotton breeders to select for higher

  3. GhDET2,a Steroid 5alpha-reductase,Plays an Important Role in Cotton Fiber Cell Initiation and Elongation

    Institute of Scientific and Technical Information of China (English)

    LUO Ming; XIAO Yue-hua; LI Xian-bi; LI De-mou; HOU Lei; HU Ming-yu; PEI Yan

    2008-01-01

    @@ Cotton (Gossypium hirsutum L.) fibers,one of the most important natural raw materials for the textile industry,are highly elongated trichomes from epidermal cells of cotton ovules.Among the longest plant cells ever characterized,cotton fiber is an ideal system for studying plant cell elongation.Brassinosteroids (BRs),a class of steroidal phytohormone,play an important role in plant cell division and elongation.

  4. Construction of microsatellite-based linkage map and mapping of nectarilessness and hairiness genes in Gossypium tomentosum

    Indian Academy of Sciences (India)

    Meiying Hou; Caiping Cai; Shuwen Zhang; Wangzhen Guo; Tianzhen Zhang; Baoliang Zhou

    2013-12-01

    Gossypium tomentosum, a wild tetraploid cotton species with AD genomes, possesses genes conferring strong fibers and high heat tolerance. To effectively transfer these genes into Gossypium hirsutum, an entire microsatellite (simple sequence repeat, SSR)-based genetic map was constructed using the interspecific cross of G. hirsutum × G. tomentosum (HT). We detected 1800 loci from 1347 pairs of polymorphic primers. Of these, 1204 loci were grouped into 35 linkage groups at LOD ≥4. The map covers 3320.8 cM, with a mean density of 2.76 cM per locus. We detected 420 common loci (186 in the At subgenome and 234 in Dt) between the HT map and the map of TM-1 (G. hirsutum) and Hai 7124 (G. barbadense; HB map). The linkage groups were assigned chromosome numbers based on location of common loci and the HB map as reference. A comparison of common markers revealed that no significant chromosomal rearrangement exist between G. tomentosum and G. barbadense. Interestingly, however, we detected numerous (33.7%) segregation loci deviating from 3:1 ratio ($P \\lt 0.05$) in HT, mostly clustering on eight chromosomes in the Dt subgenome, with some on three chromosomes in At. Two morphological traits, leaf hairiness and leaf nectarilessness were mapped on chromosomes 6 (A6) and 26 (D12), respectively. The SSR-based map constructed in this study will be useful for further genetic studies on cotton breeding, including mapping loci controlling quantitative traits associated with fiber quality, stress tolerance and developing chromosome segment specific introgression lines from G. tomentosum into G. hirsutum using marker-assisted selection.

  5. Molecular Cloning and Characterization of the Actin-depolymerizing Factor Gene in Gossypium barbadense

    Institute of Scientific and Technical Information of China (English)

    MA Zhi-ying; CHI Ji-na; WANG Xing fen; ZHOU Hong-mei; ZHANG Gui-yin

    2008-01-01

    @@ Sea Island cotton (Gossypium barbadense L.) has been highly valued in Verticillium wilt resistance and many fiber qualities including fiber length,strength,and fineness.To identify whether it had some special genes in fiber development in comparison with the upland cotton (G.hirsutum L.),an actin-depolymerizing factor (ADF) gene was cloned and characterized in this research.A 420 bp open reading frame of the cloned gene,termed GbADF1,encoded a protein of 139 amino acids,which included39.57% nonpolar amino acids,17.27% acidic amino acids,15.83% basic amino acids,and 31.92% hydrophobic amino aids.

  6. CRITICAL COMPETITION PERIOD BETWEEN COTTON AND (Gossypium hirsutum L. HARMFUL WEED COMMUNITIES IN THE GOIÁS STATE PERÍODO CRÍTICO DE COMPETIÇÃO ENTRE COMUNIDADES DE PLANTAS DANINHAS E O ALGODOEIRO (Gossypium hirsutum L. NO ESTADO DE GOIÁS

    Directory of Open Access Journals (Sweden)

    Armando M. Macêdo

    2007-09-01

    Full Text Available

    In order to study the critical time that weeds compete with the cotton plant, five trial experiments were conducted from 1978-1981. Two of the trials were carried out in a dark red latosoil with 4.70% organic matter and 10.73% clay, at the Rio Verde Agricultural School in the state of Goiás, during the 1978—79 and 1979—80 planting seasons. The other three were carried out in dark red latosoil, with a loam clay texture, moderate acidity and a low proportion of organic matter, at the Experimental station in Goiânia, Goiás during the 1978—79, 1979—80 and 1980—81 planting seasons. The treatments designed were: weeding up to 2, 4, 6, 8 first weeks, and weeding during the whole cycle ,and weeding after the 2, 4, 6, 8 first weeks and no weeding at all during the cycle. The results showed that weed competition , when not controlled, determined a yield loss of 88.75% in Goiânia and 90.65% in Rio Verde. Regarding the group control, which was maintained without weed competition, the best yield was obtained when the cotton was maintained without competition during eight weeks after the emergence in Rio Verde and during 4, 6, 8 weeks in Goiânia. The critical competition period occurred between the fourth and sixth weeks after the emergence in Rio Verde and in the fourth week after the emergence in Goiânia.

    Com a finalidade de estudar as épocas críticas de competição de plantas daninhas com o algodoeiro (Gossipium hirsutum L. , foram instalados cinco ensaios em área do Colégio Agrícola de Rio Verde — Goiás, no período de 1978 a 1981, sendo dois ensaios nos anos agrícolas de 1978/79 e 1979/80 em latossolo vermelho—escuro com 4,71% de matéria orgânica e 10,73% de argila. Os outros três ensaios foram instalados nos anos agrícolas 1978/79, 1979/80 e 1980/81, em área da Estação Experimental de

  7. Cloning and Expression Analysis of Argininosuccinate Synthetase Gene GhASS1 from Gossypium hirsutum%棉花精氨琥珀酸合成酶基因GhASS1的克隆及表达分析

    Institute of Scientific and Technical Information of China (English)

    王慧飞; 孙艳香; 冯雪; 张一名; 杨江涛; 马梅芳; 陈光

    2016-01-01

    达的融合蛋白分子量约108 kD,与预期相符,在体外具有精氨琥珀酸合成酶活性;与对照菌相比,pCold-GhASS1工程菌中游离L-Cit含量下降,L-Arg含量上升,且在生长周期中较快进入对数生长期;在含高浓度NaCl的培养基中pCold-GhASS1工程菌表现出更强的生长活力和较高的L-Arg/L-Cit值,显示了其具有较强的L-Cit向L-Arg的代谢流。【结论】从棉花中克隆了植物精氨琥珀酸合成酶基因 cDNA 序列GhASS1,推测其在植物体内可参与植物的生长和耐盐能力的调控。%[Objective]This research was conducted to clone argininosuccinate synthetase gene from Gossypium hirsutum, obtain the fusion protein by prokaryotic expression system, detect the argininosuccinate synthetase activity of the fusion protein, and identify its effects on the growth, salt tolerance, L-citrulline (L-Cit) and L-arginine (L-Arg) content of engineering bacteria, aiming to lay a foundation for this gene’s function and mechanism. [Method]The homologous cDNA fragment, named as GhASS1, was obtained from young leaves of cotton by the querying probe, a putative argininosuccinate synthetase cDNA sequence from Arabidopsis thaliana, in silico cloning and RT-PCR reaction. This fragment’s information was acquired by T/A cloning and sequencing. The genomic DNA and putative protein structure, function domain and homology were analyzed by bioinformatics software, and the phylogenetic tree was built. Its expression responses to salt tolerance were investigated by qRT-PCR. After the open reading frame of GhASS1 was linked to pCold-TF, the fusion expression vector, pCold-GhASS1, was constructed, and then transformed into the bacterial strain of Rosetta(DE3)plysS for expressing the recombination protein under the induction of IPTG. The molecular weight of recombination protein was tested by SDS-PAGE. The enzyme activities and specific activities were determinated by the method of pyrophosphoric

  8. BAC-end sequence-based SNP mining in Allotetraploid Cotton (Gossypium) utilizing re-sequencing data, phylogenetic inferences and perspectives for genetic mapping

    Science.gov (United States)

    A bacterial artificial chromosome (BAC) library and BAC-end sequences for Gossypium hirsutum L. have recently been developed. Here we report on genomic-based genome-wide SNP mining utilizing re-sequencing data with a BAC-end sequence reference for twelve G. hirsutum L. lines, one G. barbadense L. li...

  9. 陆地棉农杆菌介导茎尖的遗传转化的直接器官再生%Agrobacterium-mediated Transformation and Regeneration by Direct Shoot Organogenesis in Cotton (G. hirsutum

    Institute of Scientific and Technical Information of China (English)

    G. BALASUBRAMANI; J. AMUDHA; P. A. KUMAR; A. B.DONGRE; C. D. MAYEE

    2002-01-01

    @@ Genotype independent transformation and regeneration of Indian cotton ( Gossypium hirsutum L. ) cultivar was standardized with BtCry 1A (b ) gene by Agrobacterium-mediation.Apical meristem of elite G. hirsutum cultivar LRK-516 and LRA 5166 were co-cultivated with A. tumefaciens LBA 4404 carrying synthetic BtCry 1A (b) +npt-II genes.

  10. Effect of Crude Brassinosteroid Extract on Growth and Biochemical Changes of Gosssypium hirsutum L. and Vigna mungo L.

    Directory of Open Access Journals (Sweden)

    Syed Ali Fathima M

    2011-12-01

    Full Text Available The present study was aimed to examine the influence of BRs on seed germination and seedling growth in Gossypium hirsutum L. Var Svpr 2 and Vigna mungo (L. Hepper Var T9. The application of BRs on seed germination of Gossypium hirsutum increased the rate of germination considerably with varied percentage from 60.4 to 99. Vigna mungo seed also showed the varied percentage of germination from 56.8 to 80.1. Both the plants exhibited high percentage of vegetative growth such as shoot length, fresh weight, dry weight and leaf area on 3% of BR supplementation. The amount of chlorophyll a, b and total chlorophyll increased under BR treatments. Among the concentration, 3% BRs caused maximum effect than the other tested concentrations. High percentage of starch 53% and 31 % was observed in Gossypium and Vigna mungo respectively. The results of the present study shows that 3% BRs promotes the growth rate of Gossypium hirsutum L. Var Svpr 2 and Vigna mungo (L. Hepper Var. T9. The results of the present study supplemented to the previous observations and practical utilization of the new steroidal group of phytohormones for large scale production of the economically important crops Gossypium hirsutum L. Var Svpr 2 and Vigna mungo (L. Hepper Var. T9.

  11. 棉花种仁含油量与主要经济性状相关分析%Correlation Analysis of Seed Kernel Oil Content and Major Economic Traits in Cotton (Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    郭宝生; 刘素恩; 王凯辉; 耿香利; 张香云; 耿军义; 赵存鹏

    2013-01-01

    correlations between oil content and fiber uniformity,and oil content and elongation.The positive correlation between oil content and the fiber upper half mean length was not statistically significant.There were no significant correlations between oil content and fiber strength or fiber fineness.Oil content was weakly negatively correlated with Fusarium wilt resistance,but showed no correlation with Verticillium wilt resistance.The results of this study indicated that improvement of the oil content of cottonseed kernels will not affect lint production,and only weakly affect disease resistance.The results further indicated that such improvement may improve the fiber quality to some extent.Cottonseed kernel protein content and oil content were significantly negatively correlated.The findings indicated that it will be feasible to produce new varieties with high oil contents combined with good disease resistance,high lint yield,and better fiber quality.However,it will be very difficult to breed new varieties with both high oil and high protein content.

  12. Development of Agrobacterium-mediated virus-induced gene silencing and performance evaluation of four marker genes in Gossypium barbadense.

    Directory of Open Access Journals (Sweden)

    Jinhuan Pang

    Full Text Available Gossypiumbarbadense is a cultivated cotton species and possesses many desirable traits, including high fiber quality and resistance to pathogens, especially Verticilliumdahliae (a devastating pathogen of Gossypium hirsutum, the main cultivated species. These elite traits are difficult to be introduced into G. hirsutum through classical breeding methods. In addition, genetic transformation of G. barbadense has not been successfully performed. It is therefore important to develop methods for evaluating the function and molecular mechanism of genes in G. barbadense. In this study, we had successfully introduced a virus-induced gene silencing (VIGS system into three cultivars of G. barbadense by inserting marker genes into the tobacco rattle virus (TRV vector. After we optimized the VIGS conditions, including light intensity, photoperiod, seedling age and Agrobacterium strain, 100% of plants agroinfiltrated with the GaPDS silencing vector showed white colored leaves. Three other marker genes, GaCLA1, GaANS and GaANR, were employed to further test this VIGS system in G. barbadense. The transcript levels of the endogenous genes in the silenced plants were reduced by more than 99% compared to control plants; these plants presented phenotypic symptoms 2 weeks after inoculation. We introduced a fusing sequence fragment of GaPDS and GaANR gene silencing vectors into a single plant, which resulted in both photobleaching and brownish coloration. The extent of silencing in plants agroinfiltrated with fusing two-gene-silencing vector was consistent with plants harboring a single gene silencing vector. The development of this VIGS system should promote analysis of gene function in G. barbadense, and help to contribute desirable traits for breeding of G. barbadense and G. hirsutum.

  13. QTL mapping in A-genome diploid Asiatic cotton and their congruence analysis with AD-genome tetraploid cotton in genus Gossypium.

    Science.gov (United States)

    Ma, Xuexia; Ding, Yezhang; Zhou, Baoliang; Guo, Wangzhen; Lv, Yanhui; Zhu, Xiefei; Zhang, Tianzhen

    2008-12-01

    Asiatic cotton (Gossypium arboreum L.) is an Old World cultivated cotton species. The sinense race was planted extensively in China. Due to the advances in spinning technology during the last century, the species was replaced by the New World allotetraploid cotton G. hirsutum L. Gossypium arboreum is still grown in India and Pakistan and also used as an elite in current cotton breeding programs. In addition, G. arboreum serves as a model for genomic research in Gossypium. In the present study, we generated an A-genome diploid cotton intraspecific genetic map including 264 SSR loci with three morphological markers mapped to 13 linkage groups. The map spans 2,508.71 cM with an average distance of 9.4 cM between adjacent loci. A population containing 176 F(2:3) families was used to perform quantitative trait loci (QTL) mapping for 17 phenotypes using Multiple QTL Model (MQM) of MapQTL ver 5.0. Overall, 108 QTLs were detected on 13 chromosomes. Thirty-one QTLs for yield and its components were detected in the F2 population. Forty-one QTLs for yield and its components were detected in the F(2:3) families with a total of 43 QTLs for fiber qualities. Two QTLs for seed cotton weight/plant and lint index and three QTLs for seed index were consistently detected both in F2 and F(2:3). Most QTLs for fiber qualities and yields were located at the same interval or neighboring intervals. These results indicated that the negative correlation between fiber qualities and yield traits may result from either pleiotropic effect of one gene or linkage effects of multiple closely linked genes.

  14. Cloning and bioinformatics analysis of CDPK1 gene in Gossypium hirsutum and Sasussured involucrata from two different habitats%两种不同生境植物棉花与雪莲 CDPK1基因的克隆及生物信息学分析

    Institute of Scientific and Technical Information of China (English)

    田晓涵; 刘玉玲; 李永梅; 李锦; 庞学兵; 祝建波; 朱新霞

    2016-01-01

    为了研究两种不同生境植物钙依赖性蛋白激酶基因1( CDPK1)的差异,分别从冷敏感作物陆地棉和高耐寒植物天山雪莲中克隆得到GhCDPK1和SikCDPK1基因。通过生物信息学分析发现,GhCDPK1和SikCDPK1的开放阅读框长度分别为1764 bp和1716 bp,各编码587和571个氨基酸。蛋白质表现为弱酸性,且不稳定,亲水;二级结构中以无规则卷曲和α⁃螺旋为主,三级结构同源建模成功;无跨膜结构域和信号肽,有多个磷酸化位点,但数量存在差异;均具有典型的CDPK保守结构域。 GhCDPK1和SikCDPK1氨基酸序列同源性为79�9%,二者明显的区别在于GhCDPK1含有4个EF⁃hand基序,但SikCDPK1只存在2个EF⁃hand基序。进化分析结果表明,GhCD⁃PK1与可可CDPK1亲缘关系最近,SikCDPK1与菊花CDPK2亲缘关系最近。%To study the functional differences of calcium⁃dependent protein kinase gene 1 ( CDPK1 ) in different habitats, 2 calcium⁃dependent protein kinase genes GhCDPK1 and SikCDPK1 were obtained from coldness⁃sensitive crop Gossypium hirsutum and hardy plant Sasussured involucrata Kar. et Kir, respectively. GhCDPK1 gene contains a 1 764⁃bp open reading frame encoding 587 amino acids, and SikCDPK1 contains a 1 716⁃bp open reading frame encoding 571 amino acids. The corresponding proteins are unstable, hydrophilic and mildly acidic, with random coil andα⁃helix dominating the secondary structure. Two deduced proteins have no transmembrane region and signal peptide. The protein sequences of Gh⁃CDPK1 and SikCDPK1 include multiple phosphorylation sites with different numbers, and contain a typical CDPK con⁃served domain. The GhCDPK1 and SikCDPK1 shared amino acid sequence homology of 79�9%. There are four conservative EF⁃hands in GhCDPK1 but only two EF⁃hands in SikCDPK1. Phylogenic analysis revealed that the GhCDPK1 protein was the closest to Theobroma cacao CDPK1, and the SikCDPK1 protein

  15. Genetic Diversity of the Two Commercial Tetraploid Cotton Species in the Gossypium Diversity Reference Set.

    Science.gov (United States)

    Hinze, Lori L; Gazave, Elodie; Gore, Michael A; Fang, David D; Scheffler, Brian E; Yu, John Z; Jones, Don C; Frelichowski, James; Percy, Richard G

    2016-05-01

    A diversity reference set has been constructed for the Gossypium accessions in the US National Cotton Germplasm Collection to facilitate more extensive evaluation and utilization of accessions held in the Collection. A set of 105 mapped simple sequence repeat markers was used to study the allelic diversity of 1933 tetraploid Gossypium accessions representative of the range of diversity of the improved and wild accessions of G. hirsutum and G. barbadense. The reference set contained 410 G. barbadense accessions and 1523 G. hirsutum accessions. Observed numbers of polymorphic and private bands indicated a greater diversity in G. hirsutum as compared to G. barbadense as well as in wild-type accessions as compared to improved accessions in both species. The markers clearly differentiated the 2 species. Patterns of diversity within species were observed but not clearly delineated, with much overlap occurring between races and regions of origin for wild accessions and between historical and geographic breeding pools for cultivated accessions. Although the percentage of accessions showing introgression was higher among wild accessions than cultivars in both species, the average level of introgression within individual accessions, as indicated by species-specific bands, was much higher in wild accessions of G. hirsutum than in wild accessions of G. barbadense. The average level of introgression within individual accessions was higher in improved G. barbadense cultivars than in G. hirsutum cultivars. This molecular characterization reveals the levels and distributions of genetic diversity that will allow for better exploration and utilization of cotton genetic resources.

  16. Goosegrass (Eleusine indica) density effects on cotton (Gossypium hirsutum)

    Institute of Scientific and Technical Information of China (English)

    MA Xiao-yan; WU Han-wen; JIANG Wei-li; MA Ya-jie; MA Yan

    2015-01-01

    Goosegrass is one of the worst agricultural weeds on a worldwide basis. Understanding of its interference impact in crop ifeld wil provide useful information for weed control programs. Field experiments were conducted during 2010–2012 to determine the inlfuence of goosegrass density on cotton growth at the weed densities of 0, 0.125, 0.25, 0.5, 1, 2, and 4 plants m–1 of row. Seed cotton yield tended to decrease with the increase in weed density, and goosegrass at a density of 4 plants m–1 of row signiifcantly reduced cotton yields by 20 to 27%. A density of 11.6–19.2 goosegrass plant m–1 of row would result in a 50%cotton yield loss from the maximum yield according to the hyperbolic decay regression model. Bol production was not affected in the early growing season. But bol numbers per plant were reduced about 25%at the den-sity of 4 plants m–1 of row in the late growing season. Both cotton bol weight and seed numbers per bol were signiifcantly reduced (8%) at 4 goosegrass plants m–1 of row. Cotton plant height, stem diameter and sympodial branch number were not affected as much as cotton yields by goosegrass competition. Seed index, lint percentage and lint ifber properties were unaffected by weed competition. Intraspeciifc competition resulted in density-dependent effects on weed biomass per plant, 142–387 g dry weight by harvest. Goosegrass biomass m–2 tended to increase with increasing weed density as indicated by a quadratic response. The adverse impact of goosegrass on cotton yield identiifed in this study has indicated the need of effective goosegrass management.

  17. Heat Stress Related Gene Expression in Gossypium hirsutum L.

    Institute of Scientific and Technical Information of China (English)

    DEMIREL; Ufuk; GR; M; Atilla; KARAKU; Mehmet; MEMON; Abdul; Rezaque

    2008-01-01

    Abiotic stress is a major limiting factor to crop productivity,and heat stress is one of the important elements for reduced crop production.Plants respond to heat stress at molecular and cellular levels as well as physiological level.Heat stress alters expression patterns of numerous genes in plants.

  18. Heat Stress Related Gene Expression in Gossypium hirsutum L.

    Institute of Scientific and Technical Information of China (English)

    DEMIREL Ufuk; G(U)R M Atilla; KARAKU Mehmet; MEMON Abdul Rezaque

    2008-01-01

    @@ Abiotic stress is a major limiting factor to crop productivity,and heat stress is one of the important elements for reduced crop production.Plants respond to heat stress at molecular and cellular levels as well as physiological level.Heat stress alters expression patterns of numerous genes in plants.At the molecular level,most of the information for heat stress response was obtained from model plants such as Arabidopsis thaliana,Medicago trancatula,and ,Oryza sativa,but little molecular research has focused on heat stress respones in cotton.

  19. Duplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.

    Directory of Open Access Journals (Sweden)

    Abdukarimov Abdusattor

    2010-06-01

    Full Text Available Abstract Background Phytochromes are a family of red/far-red photoreceptors that regulate a number of important developmental traits in cotton (Gossypium spp., including plant architecture, fiber development, and photoperiodic flowering. Little is known about the composition and evolution of the phytochrome gene family in diploid (G. herbaceum, G. raimondii or allotetraploid (G. hirsutum, G. barbadense cotton species. The objective of this study was to obtain a preliminary inventory and molecular-evolutionary characterization of the phytochrome gene family in cotton. Results We used comparative sequence resources to design low-degeneracy PCR primers that amplify genomic sequence tags (GSTs for members of the PHYA, PHYB/D, PHYC and PHYE gene sub-families from A- and D-genome diploid and AD-genome allotetraploid Gossypium species. We identified two paralogous PHYA genes (designated PHYA1 and PHYA2 in diploid cottons, the result of a Malvaceae-specific PHYA gene duplication that occurred approximately 14 million years ago (MYA, before the divergence of the A- and D-genome ancestors. We identified a single gene copy of PHYB, PHYC, and PHYE in diploid cottons. The allotetraploid genomes have largely retained the complete gene complements inherited from both of the diploid genome ancestors, with at least four PHYA genes and two genes encoding PHYB, PHYC and PHYE in the AD-genomes. We did not identify a PHYD gene in any cotton genomes examined. Conclusions Detailed sequence analysis suggests that phytochrome genes retained after duplication by segmental duplication and allopolyploidy appear to be evolving independently under a birth-and-death-process with strong purifying selection. Our study provides a preliminary phytochrome gene inventory that is necessary and sufficient for further characterization of the biological functions of each of the cotton phytochrome genes, and for the development of 'candidate gene' markers that are potentially useful for

  20. Comparative Genetics of Floral Morphology in Diploid and Allotetraploid Gossypium

    Institute of Scientific and Technical Information of China (English)

    CHEE Peng W

    2008-01-01

    @@ The cultivated Gossypium A genome diploid species G.arboreum and G.herbaceum and the allotetraploid species G.hirsutum and G.barbadense share common morphology for various floral traits,which offers an ideal system in which to investigate genetic mechanisms that differentiate diploid and tetraploid genomes.For example,knowing how a single phenotype behaves in the diploids,and comparing the same trait with different dosage effects in the tetraploids,may provide a means to study inter- and intra-genomic interactions in the polyploid genome.

  1. Comparative Transmission Genetics of Introgressed Chromatin in Gossypium Species

    Institute of Scientific and Technical Information of China (English)

    WAGHMARE Vijay N; RONG Jun-kang; ROGERS Carl J; BOWERS John E; PATERSON Andrew H

    2008-01-01

    @@ Wild relatives and un-adapted germplasm of crop species harbors several adaptive traits.Introgression of genes for economic and adaptive traits brings in novel genetic variation into the gene pools of many crops including cotton.We compared patterns of introgression into polyploid Gossypium hirsuture from its sister G.tomentosum,and from G.barbadense representing a different clade tracing to the same polyploidization.Advanced-generation populations,resulting from recurrent backcrossing to G.hirsutum,show a paucity of G.tomentosum alleles and severe deficiencies of homozygotes.

  2. Cytogenetics and the Utilization of Gossypium Germplasm%棉属种质资源的细胞遗传学研究和利用

    Institute of Scientific and Technical Information of China (English)

    David STELLY

    2002-01-01

    @@ Interspecific introgression contributes significantly to genetic improvement of cotton ( Gossypium hirsutum L. ). Cytogenetics has figured prominently in the creation of interspecific hybrids, synthetic polyploids,backcrosses, and other stocks essential to earlyand mid-stage manipulation of germplasm at genome-wide and chromosome-specific levels.

  3. 异源四倍体棉花栽培品种分子连锁遗传图谱的构建%Construction of Molecular Linkage Map of Cultivated Allotetraploid Cotton (Gossypium hirsutum L.×G. Barbadense L. )with SSR and RAPD Markers

    Institute of Scientific and Technical Information of China (English)

    Jun ZHANG; Wang-zhen GUO; Tian-zhen ZHANG

    2002-01-01

      A permanent doubled haploid population from the crossing of G. hirsutum × G. barbadense were developed by means of Vsg, virescently marked semigamy line in sea island cotton,which was characterized by a cytological mechanism for developing haploids with certain convenience, and thus constructed an allotetraploid cotton molecular genetic linkage map with the high level polymorphic SSR and RAPD markers.……

  4. Efeito do controle de nematóides na qualidade da fibra do algodoeiro Effect of nematode control on fiber properties of upland cotton

    Directory of Open Access Journals (Sweden)

    Rubens Rodolfo Albuquerque Lordello

    1985-01-01

    Full Text Available Avaliou-se o efeito do tratamento com torta de mamona e com nematicidas sistêmicos (aldicarb, carbofurã, oxamil e sulfona de aldicarb, na qualidade das fibras do algodoeiro (Gossypium hirsutum cv. IAC 17 cultivado em área infestada por Meloidogyne incognita, Pratylenchus brachyurus, Helicotylenchus dihysteroides e Xiphinema sp., no nunicípio de Paranapanema, no Estado de São Paulo. As características afetadas foram: o comprimento das fibras, no qual só o carbofurã produziu aumento significativo; a resistência das fibras, que aumentou com os tratamentos torta de mamona e aldicarb; e a maturidade das fibras, onde, com exceção do oxamil, todos os tratamentos foram superiores à testemunha. As características de uniformidade e índice de finura das fibras não diferiram da testemunha em nenhum dos tratamentos.The effect of nematode control using castor bean cake and systemic nematicide treatments (Aldicarb, Carbofuran, Oxamyl and Sulfon Aldicarb, on the fiber properties of upland cotton (Gossypium hirsutum cv. IAC 17 was evaluated. The crop was grown in Paranapanema - SP, Brazil, in a field infested with Meloidogyne incognita, Pratylenchus brachyurus, Helicotylenchus dihysteroides and Xiphinema sp. The properties affected were: fiber length, which improved only with Carbofuran; fiber strength, that improved with the treatments castor bean calce and Aldicarb; and fiber maturity, in which all treatments showed superior results than the check, except Oxamyl. No treatment effects on fiber fineness and uniformity were observed.

  5. Isolation and characterization of gene sequences expressed in cotton fiber

    Directory of Open Access Journals (Sweden)

    Taciana de Carvalho Coutinho

    2016-06-01

    Full Text Available ABSTRACT Cotton fiber are tubular cells which develop from the differentiation of ovule epidermis. In addition to being one of the most important natural fiber of the textile group, cotton fiber afford an excellent experimental system for studying the cell wall. The aim of this work was to isolate and characterise the genes expressed in cotton fiber (Gossypium hirsutum L. to be used in future work in cotton breeding. Fiber of the cotton cultivar CNPA ITA 90 II were used to extract RNA for the subsequent generation of a cDNA library. Seventeen sequences were obtained, of which 14 were already described in the NCBI database (National Centre for Biotechnology Information, such as those encoding the lipid transfer proteins (LTPs and arabinogalactans (AGP. However, other cDNAs such as the B05 clone, which displays homology with the glycosyltransferases, have still not been described for this crop. Nevertheless, results showed that several clones obtained in this study are associated with cell wall proteins, wall-modifying enzymes and lipid transfer proteins directly involved in fiber development.

  6. Analysis of flavonoids and the flavonoid structural genes in brown fiber of upland cotton.

    Directory of Open Access Journals (Sweden)

    Hongjie Feng

    Full Text Available BACKGROUND: As a result of changing consumer preferences, cotton (Gossypium Hirsutum L. from varieties with naturally colored fibers is becoming increasingly sought after in the textile industry. The molecular mechanisms leading to colored fiber development are still largely unknown, although it is expected that the color is derived from flavanoids. EXPERIMENTAL DESIGN: Firstly, four key genes of the flavonoid biosynthetic pathway in cotton (GhC4H, GhCHS, GhF3'H, and GhF3'5'H were cloned and studied their expression profiles during the development of brown- and white cotton fibers by QRT-PCR. And then, the concentrations of four components of the flavonoid biosynthetic pathway, naringenin, quercetin, kaempferol and myricetin in brown- and white fibers were analyzed at different developmental stages by HPLC. RESULT: The predicted proteins of the four flavonoid structural genes corresponding to these genes exhibit strong sequence similarity to their counterparts in various plant species. Transcript levels for all four genes were considerably higher in developing brown fibers than in white fibers from a near isogenic line (NIL. The contents of four flavonoids (naringenin, quercetin, kaempferol and myricetin were significantly higher in brown than in white fibers and corresponding to the biosynthetic gene expression levels. CONCLUSIONS: Flavonoid structural gene expression and flavonoid metabolism are important in the development of pigmentation in brown cotton fibers.

  7. Analysis of Complete Nucleotide Sequences of 12 Gossypium Chloroplast Genomes: Origin and Evolution of Allotetraploids

    Science.gov (United States)

    Xu, Qin; Xiong, Guanjun; Li, Pengbo; He, Fei; Huang, Yi; Wang, Kunbo; Li, Zhaohu; Hua, Jinping

    2012-01-01

    Gossypium is the maternal source of extant allotetraploid species and allotetraploids have a monophyletic origin. G. hirsutum AD1 lineages have experienced more sequence variations than other allotetraploids in intergenic regions. The available complete nucleotide sequences of 12 Gossypium chloroplast genomes should facilitate studies to uncover the molecular mechanisms of compartmental co-evolution and speciation of Gossypium allotetraploids. PMID:22876273

  8. Hybridization between Gossypium herbaceum and Gossypium stochsii through embryo rescue

    Institute of Scientific and Technical Information of China (English)

    GILLMANJEETS; YPSBAJAJ

    1996-01-01

    Nutrient media and culture conditions have been defined for ovules 3 and 5 d after pollination and embryos of Gossypium herbaceum respectively.The technique was then used to produce interspecific hybrids between a cultivated Gossypium herbaceum and a wild species,G.stocksii.The hybrid plants were transferred to field and they exhibited most of the characters of the pollen parent i.e.G.stocksii.

  9. Specific expression of a β-tubulin gene (GhTub1) in developing cotton fibers

    Institute of Scientific and Technical Information of China (English)

    LI; Yuanli; (李园莉); SUN; Jie; (孙杰); LI; Chunhong; (李春红); ZHU; Yongqing; (朱勇清); XIA; Guixian; (夏桂先)

    2003-01-01

    A cDNA library was constructed using poly (A)+ RNA isolated from -1-15 DPA fibers of upland cotton (Gossypium hirsutum). The cDNA encoding a β-tubulin isoform (designated as GhTub1) was identified through EST search. Northern blot analysis using 3′-UTR of the cDNA as a gene-specific probe was performed to investigate the expression levels of GhTub1 in various organs and in the developing fibers. The results showed that GhTub1 gene was specifically expressed in cotton fiber cells. During fiber development, GhTub1 transcripts accumulated highlyat the stage of cell rapid elongation with the highest expression appearing at the time when fiber expansion reaches the peak rate. To probe the in vivo function of GhTub1, its cDNA was cloned in the yeast expression vector pREP1 and transformed into the fission yeast Schizosaccharomyces pombe. Overexpression of GhTub1 in yeast cells caused severe changes in the cell morphology. These results suggest that GhTub1 may play a role in the polar elongation of cotton fibers. To our knowledge, this is the first report on the fiber-specific transcript accumulation of a cotton β-tubulin gene.

  10. Genome-Wide Identification and Expression Analysis of the Biotin Carboxyl Carrier Subunits of Heteromeric Acetyl-CoA Carboxylase in Gossypium

    Science.gov (United States)

    Cui, Yupeng; Zhao, Yanpeng; Wang, Yumei; Liu, Zhengjie; Ijaz, Babar; Huang, Yi; Hua, Jinping

    2017-01-01

    Acetyl-CoA carboxylase is an important enzyme, which catalyzes acetyl-CoA’s carboxylation to produce malonyl-CoA and to serve as a committed step for de novo fatty acid biosynthesis in plastids. In this study, 24 putative cotton BCCP genes were identified based on the lately published genome data in Gossypium. Among them, 4, 4, 8, and 8 BCCP homologs were identified in Gossypium raimondii, G. arboreum, G. hirsutum, and G. barbadense, respectively. These genes were divided into two classes based on a phylogenetic analysis. In each class, these homologs were relatively conserved in gene structure and motifs. The chromosomal distribution pattern revealed that all the BCCP genes were distributed equally on corresponding chromosomes or scaffold in the four cotton species. Segmental duplication was a predominant duplication event in both of G. hirsutum and G. barbadense. The analysis of the expression profile showed that 8 GhBCCP genes expressed in all the tested tissues with changed expression levels, and GhBCCP genes belonging to class II were predominantly expressed in developing ovules. Meanwhile, the expression analysis for the 16 cotton BCCP genes from G. raimondii, G. arboreum and G. hirsutum showed that they were induced or suppressed by cold or salt stress, and their expression patterns varied among different tissues. These findings will help to determine the functional and evolutionary characteristics of the BCCP genes in Gossypium species. PMID:28507552

  11. Genome-Wide Identification and Expression Analysis of the Biotin Carboxyl Carrier Subunits of Heteromeric Acetyl-CoA Carboxylase in Gossypium

    Directory of Open Access Journals (Sweden)

    Jinping Hua

    2017-05-01

    Full Text Available Acetyl-CoA carboxylase is an important enzyme, which catalyzes acetyl-CoA’s carboxylation to produce malonyl-CoA and to serve as a committed step for de novo fatty acid biosynthesis in plastids. In this study, 24 putative cotton BCCP genes were identified based on the lately published genome data in Gossypium. Among them, 4, 4, 8, and 8 BCCP homologs were identified in Gossypium raimondii, G. arboreum, G. hirsutum, and G. barbadense, respectively. These genes were divided into two classes based on a phylogenetic analysis. In each class, these homologs were relatively conserved in gene structure and motifs. The chromosomal distribution pattern revealed that all the BCCP genes were distributed equally on corresponding chromosomes or scaffold in the four cotton species. Segmental duplication was a predominant duplication event in both of G. hirsutum and G. barbadense. The analysis of the expression profile showed that 8 GhBCCP genes expressed in all the tested tissues with changed expression levels, and GhBCCP genes belonging to class II were predominantly expressed in developing ovules. Meanwhile, the expression analysis for the 16 cotton BCCP genes from G. raimondii, G. arboreum and G. hirsutum showed that they were induced or suppressed by cold or salt stress, and their expression patterns varied among different tissues. These findings will help to determine the functional and evolutionary characteristics of the BCCP genes in Gossypium species.

  12. Uma nova espécie para o gênero Gossypium L. A new tetraploid species of the genus Gossypium

    Directory of Open Access Journals (Sweden)

    Condorcet Aranha

    1969-01-01

    Full Text Available Uma nova espécie é descrita, pertencente ao gênero Gossypium L. O material procede da Serra da Formiga, município de Caicó, Estado do Rio Grande do Norte, onde foi colhido em meio da vegetação natural pela equipe da Seção de Algodão, do Instituto Agronômico, em setembro de 1963 ². Foi denominado Gossypium caicoense, Condorcet, Hermógenes et Imre. Possui 52 cromossomos, como as espécies tetraplóides do gênero. Seu estudo posterior em casa de vegetação permitiu diferenciá-lo das demais espécies tetraplóides e das descrições existentes de algodoeiros indígenas do Brasil. Os dados de um estudo comparativo são discutidos a fim de apontar as diferenças dessa espécie para com as espécies G. hirsutum L. e G. barbadense L. var. brasiliense.A new species of tetraploid cotton, Gossypium caicoense, Condorcet, Hermógenes et Imre, is described. It was collected as a wild component of the natural vegetation in the "Serra da Formiga", near Caicó, State of Rio Grande do Norte, Brazil, by research workers of the Cotton Section of the "Instituto Agronômico do Estado de São Paulo", in September of 1963. Its chromosome number is 2n = 52. It was cultivated and studied in greenhouse conditions at the referred Institute and showed significant morphological differences when compared to the known tetraploid species of the Genus as well as to existing descriptions of Brazilian native types of cotton. A discussion of the data obtained by a comparative study establishes the main morphological differences between G. caicoense and the cultivated species G. hirsutum and G. barbadense var. brasiliense.

  13. Cloning and Induced Expression Analysis of GhSAMDC2/3/4 in Cotton(Gossypium hirsutum L.)%棉花S-腺苷蛋氨酸脱羧酶基因(GhSAMDC2/3/4)的克隆及其诱导表达分析

    Institute of Scientific and Technical Information of China (English)

    王凡龙; 朱华国; 程文翰; 刘永昌; 成新琪; 孙杰

    2015-01-01

    利用电子克隆结合RT-PCR技术克隆获得陆地棉(Gossvpium hirsutum L.)S-腺苷蛋氨酸脱羧酶(S-adenosylmethionine decarboxylase,SAMDC)基因家族3个基因,分别命名为GhSAMDC2、GhSAMDC3和GhSAMDC4.序列分析显示,该基因cDNA包含的upstream ORF(uORF)和main ORF(mORF)为植物SA MDC基因特征ORF,其中mORF长度分别为1068 bp、1110 bp和1032 bp,分别编码355、369和343个氨基酸.聚类分析表明,GhSAMDC2/3蛋白与可可树(Theobroma cacao) SAMDC聚为一类,且GhSAMDC2与Gh-SAMDC3蛋白亲缘关系最近;GhSAMDC4与拟南芥AtSAMDC4聚为一类.实时荧光定量PCR分析表明,GhSAMDC2在茎中表达相对较高,随着纤维发育其表达量不断增加,在纤维发育后期其表达量达到最高;GhSAMDC2/3/4在不同的胁迫条件下表现出不同的表达模式,GhSAMDC2受低温和干旱胁迫诱导最强烈,GhSAMDC3响应盐胁迫显著,GhSAMDC4受ABA诱导强烈.上述结果为进一步研究棉花SAMDC基因功能奠定了一定基础.

  14. Molecular Cloning and Characterization of a β-Galactosidase Gene Expressed Preferentially in Cotton Fibers

    Institute of Scientific and Technical Information of China (English)

    Heng-Mu ZHANG; Jin-Yuan LIU

    2005-01-01

    β-galactosidases (EC 3.2.1.23) constitute a widespread family of enzymes in plants that is thought to be involved in metabolism of cell wall polysaccharides. We reported herein the isolation of a fulllength cDNA encoding a typical β-galactosidase protein, designated GhGal1 (Gossypium hirsutum L.galactosidase), of 843 amino acids with a predicted molecular mass of nearly 94.8 kDa. In addition to a glycosyl hydrolase family 35 domain and a putative signal peptide, an unusual characteristic of GhGal 1 is that, at the C-terminus of the enzyme, a domain was found that is structurally related to a sea urchin egg lectin (SUEL-lectin) with D-galactose- and L-rhamnose-binding domains. Based on results from Southern blot, we estimated that there would be two copies of the GhGal1 gene per haploid genome of G. hirsutum.The transcripts of GhGal1 were regulated spatially and temporally and were present in very high abundance at the elongation stage of the cotton fiber. The expression pattern suggests that the GhGal1 gene could be involved in metabolism of the primary cell wall.

  15. Efeito de tratamentos com fungicidas na conservação de sementes de algodoeiro (Gossypium hirsutum L. Fungicides treatment and storage of cotton seed (Gossypium hirsutum L.

    Directory of Open Access Journals (Sweden)

    Edivaldo Cia

    1980-01-01

    Full Text Available Foi feito um estudo sobre a germinação de sementes das variedades comerciais de algodoeiro IAC 13-1 e IAC 17, mantendo-se as sementes em condições de labo-ratório durante dois anos e utilizando-se os seguintes tratamentos com fungicidas: 1 PCNB + thiram; 2 Benomyl; 3 deslintamento mecânico (testemunha; 4 deslintamento ácido (D.A.; 5 PCNB + thiram + D.A.; e 6 mercúrio metálico. A semeadura foi efetuada em canteiros de casa de vegetação, com três repetições, utilizando-se cinqüenta sementes por parcela. A avaliação dos dados foi feita através de índices de emergência (relação entre o stand inicial e o número de sementes utilizadas e de resistência a fungos do tombamento (relação entre a média ponderada das notas das plantas 25 dias após a emergência e o stand inicial. As notas variaram de 1 a 3 de acordo com a lesão de tombamento na altura do colo da planta. Pelos isolados obtidos de plantas com lesão, constatou-se maior incidência de Rhyzoctonia solani Kuhn. Nas condições do ensaio, os fungicidas à base de mercúrio metálico, PCNB + thiram e Benomyl apresentaram um bom efeito aos sete meses de tratamento, o qual foi mantido até os dezesseis meses com os mesmos tratamentos, exceção feita para Benomyl. O deslintamento com ácido deu bom resultado somente até os sete meses, pois aos dezesseis meses o poder germinativo piorou relativamente, sendo que esse efeito negativo foi diminuído com tratamento de PCNB + thiram.An experiment was carried out for two years in a greenhouse to study the effect of fungicides treatment on the germination of seeds of São Paulo cotton varieties, IAC 13-1 and IAC 17. Treated seeds were stored in uncontrolled conditions and germination was tested yearly. For each variety, the following treatments were applied: 1 PCNB + thiram, 2 Benomyl, 3 Check (mechanically delinted seed, 4 Acid delinted seed (D.A., 5 D.A. + PCNB + thiram, 6 Metallic mercury. For treatments 1, 2 and 6 mechanically delinted seeds were used. Germination tests were carried out, in a randomized block design with three replications, by using fifty seeds in each experimental plot. Results were avaliated through an emergence index (% and a resistance index (% and showed the following: 1 The fungicide metallic mercury, PCNB + thiram, and Benomyl, had a significant effect on germination seven months after treatment, that persisted after sixteen months, except for Benomyl treatment. 2 The acid delinted seeds showed a decrease in germination at the sixteen months test. However, the negative effect of this treatment was adding PCNB + thiram.

  16. Taxonomy Icon Data: Gossypium raimondii Ulbr. [Taxonomy Icon

    Lifescience Database Archive (English)

    Full Text Available aimondii_NL.png Gossypium_raimondii_S.png Gossypium_raimondii_NS.png http://biosciencedbc.jp/taxonomy_icon/i...con.cgi?i=Gossypium+raimondii&t=L http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Gossypium+raimondii&t=NL ...http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Gossypium+raimondii&t=S http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Gossypium+raimondii&t=NS ...

  17. Nitrogen fertilizer sources and tillage effects on cotton growth, yield, and fiber quality

    Science.gov (United States)

    Interest in urea-ammonium sulfate (UAS) as a N fertilizer is increasing due, in part, to increased restriction on ammonium nitrate. This has resulted in UAS being marketed as an alternative fertilizer source; however, UAS has not been widely tested. A cotton (Gossypium hirsutum L.) field study was c...

  18. Cloning of Two Genes Related to Plant Defense Response of Sea Island Cotton (Gossypium barbadense L. )%两个与海岛棉防卫反应相关基因的克隆

    Institute of Scientific and Technical Information of China (English)

    Daolong DOU; Bingshan WANG; Yixiong TANG; Zhixing WANG; Jingsan SUN; Shirong JIA

    2002-01-01

    @@ Verticillium wilt, caused by V. dahaliae, is a serious fungus disease of cotton in China.Nearly all cultivated upland cotton (Gossypium hirsutum) varieties are sensitive to it. Some species of island cotton ( G. barbadense ),however, have a natural resistance to this pathogen. To investigate the mechanism of SAR signal transduction and response to pathogen,two genes, which play important roles in the development of SAR, are cloned by degenerated PCR.

  19. Molecular and Biochemical Evidence for Phenylpropanoid Synthesis and Presence of Wall-linked Phenolics in Cotton Fibers

    Institute of Scientific and Technical Information of China (English)

    Ling Fan; Wei-Jun Shi; Wen-Ran Hu; Xiao-Yan Hao; Dong-Mei Wang; Hui Yuan; Hong-Ying Yan

    2009-01-01

    The mature cotton (Gossypium hirsutum L.) fiber is a single cell with a typically thickened secondary cell wall. The aim of this research was to use molecular, spectroscopic and chemical techniques to investigate the possible occurrence of previously overlooked accumulation of phenolics during secondary cell wall formation in cotton fibers. Relative quantitative reverse transcription-polymerase chain reaction analysis showed that GhCAD6 and GhCAD1 were predominantly expressed among seven gene homologs, only GhCAD6 was up-regulated during secondary wall formation in cotton fibers. Phylogenic analysis revealed that GhCAD6 belonged to Class I and was proposed to have a major role in monolignol biosynthesis, and GhCADI belonged to Class III and was proposed to have a compensatory mechanism for monolignol biosynthesis. Amino acid sequence comparison showed that the cofactor binding sites of GhCADs were highly conserved with high similarity and identity to bona fide cinnamyl alcohol dehydrogenases. The substrate binding site of GhCADI is different from GhCAD6. This difference was confirmed by the different catalytic activities observed with the enzymes. Cell wall auto-fluorescence, Fourier transform infrared spectroscopy (FTIR), high-performance liquid chromatography (HPLC) and chemical analyses confirmed that phenolic compounds were bound to the cell walls of mature cotton fibers. Our findings may suggest a potential for genetic manipulation of cotton fiber properties, which are of central importance to agricultural, cotton processing and textile industries.

  20. Lipid metabolites in seeds of diverse Gossypium accessions: Molecular identification of a high oleic mutant allele

    Science.gov (United States)

    The domestication and breeding of cotton for elite, high-fiber cultivars has led to reduced genetic variation of seed constituents within currently cultivated upland Cotton genotypes. However, a recent screen of the genetically diverse U.S. National Cotton Germplasm Collection identified Gossypium ...

  1. Studies of new EST-SSRs derived from Gossypium barbadense

    Institute of Scientific and Technical Information of China (English)

    ZHANG YanXin; LIN ZhongXu; LI Wu; TU LiLi; NIE YiChun; ZHANG XianLong

    2007-01-01

    Existing cotton EST-SSR markers are mostly derived from Gossypium arboreum and Gossypium hir- sutum, but EST-SSR markers from Gossypium barbadense are scarce. One hundred and nineteen EST-SSRs were developed based on 98 unique ESTs from a cDNA library constructed in our laboratory using developing fibers from G. barbadense cv. Pima3-79. Among the SSRs, trinucleotide AAG appeared at a high frequency of 11.76%. 36 accessions (consisting of 13 diploids of the A genome, 11 diploids of the D genome and 12 allotetraploids of the AD genome) were employed to test new EST-SSRs. 76 EST-SSRs were successfully amplified, and 313 polymorphic fragments were yielded, with an average of 4.11 fragments per primer pair. The PIC ranged from 0.17 to 0.95 with an average of 0.53. Based on Jaccard's genetic similarity coefficient, these 36 accessions were clustered into three groups. 21 EST-SSRs exhibited polymorphisms in BC1 population ((Emian22 × Pima3-79) × Emian22), 24 polymor- phic loci were generated, while 22 of the 24 polymorphic loci were integrated with our interspecific BC1 backbone genetic linkage map, and anchored in 12 chromosomes. This study effectively proved that EST-SSRs from G. barbadense are valuable for genetic diversity analysis and genetic mapping.

  2. Steam explosion distinctively enhances biomass enzymatic saccharification of cotton stalks by largely reducing cellulose polymerization degree in G. barbadense and G. hirsutum.

    Science.gov (United States)

    Huang, Yu; Wei, Xiaoyang; Zhou, Shiguang; Liu, Mingyong; Tu, Yuanyuan; Li, Ao; Chen, Peng; Wang, Yanting; Zhang, Xuewen; Tai, Hongzhong; Peng, Liangcai; Xia, Tao

    2015-04-01

    In this study, steam explosion pretreatment was performed in cotton stalks, leading to 5-6 folds enhancements on biomass enzymatic saccharification distinctive in Gossypium barbadense and Gossypium hirsutum species. Sequential 1% H2SO4 pretreatment could further increase biomass digestibility of the steam-exploded stalks, and also cause the highest sugar-ethanol conversion rates probably by releasing less inhibitor to yeast fermentation. By comparison, extremely high concentration alkali (16% NaOH) pretreatment with raw stalks resulted in the highest hexoses yields, but it had the lowest sugar-ethanol conversion rates. Characterization of wall polymer features indicated that biomass saccharification was enhanced with steam explosion by largely reducing cellulose DP and extracting hemicelluloses. It also showed that cellulose crystallinity and arabinose substitution degree of xylans were the major factors on biomass digestibility in cotton stalks. Hence, this study has provided the insights into cell wall modification and biomass process technology in cotton stalks and beyond.

  3. A melting pot of Old World begomoviruses and their satellites infecting a collection of Gossypium species in Pakistan.

    Directory of Open Access Journals (Sweden)

    Muhammad Shah Nawaz-ul-Rehman

    Full Text Available CLCuD in southern Asia is caused by a complex of multiple begomoviruses (whitefly transmitted, single-stranded [ss]DNA viruses in association with a specific ssDNA satellite; Cotton leaf curl Multan betasatellite (CLCuMuB. A further single ssDNA molecule, for which the collective name alphasatellites has been proposed, is also frequently associated with begomovirus-betasatellite complexes. Multan is in the center of the cotton growing area of Pakistan and has seen some of the worst problems caused by CLCuD. An exhaustive analysis of the diversity of begomoviruses and their satellites occurring in 15 Gossypium species (including G. hirsutum, the mainstay of Pakistan's cotton production that are maintained in an orchard in the vicinity of Multan has been conducted using φ29 DNA polymerase-mediated rolling-circle amplification, cloning and sequence analysis. The non-cultivated Gossypium species, including non-symptomatic plants, were found to harbor a much greater diversity of begomoviruses and satellites than found in the cultivated G. hirsutum. Furthermore an African cassava mosaic virus (a virus previously only identified in Africa DNA-A component and a Jatropha curcas mosaic virus (a virus occurring only in southern India DNA-B component were identified. Consistent with earlier studies of cotton in southern Asia, only a single species of betasatellite, CLCuMuB, was identified. The diversity of alphasatellites was much greater, with many previously unknown species, in the non-cultivated cotton species than in G. hirsutum. Inoculation of newly identified components showed them to be competent for symptomatic infection of Nicotiana benthamiana plants. The significance of the findings with respect to our understanding of the role of host selection in virus diversity in crops and the geographical spread of viruses by human activity are discussed.

  4. A melting pot of Old World begomoviruses and their satellites infecting a collection of Gossypium species in Pakistan.

    Science.gov (United States)

    Nawaz-ul-Rehman, Muhammad Shah; Briddon, Rob W; Fauquet, Claude M

    2012-01-01

    CLCuD in southern Asia is caused by a complex of multiple begomoviruses (whitefly transmitted, single-stranded [ss]DNA viruses) in association with a specific ssDNA satellite; Cotton leaf curl Multan betasatellite (CLCuMuB). A further single ssDNA molecule, for which the collective name alphasatellites has been proposed, is also frequently associated with begomovirus-betasatellite complexes. Multan is in the center of the cotton growing area of Pakistan and has seen some of the worst problems caused by CLCuD. An exhaustive analysis of the diversity of begomoviruses and their satellites occurring in 15 Gossypium species (including G. hirsutum, the mainstay of Pakistan's cotton production) that are maintained in an orchard in the vicinity of Multan has been conducted using φ29 DNA polymerase-mediated rolling-circle amplification, cloning and sequence analysis. The non-cultivated Gossypium species, including non-symptomatic plants, were found to harbor a much greater diversity of begomoviruses and satellites than found in the cultivated G. hirsutum. Furthermore an African cassava mosaic virus (a virus previously only identified in Africa) DNA-A component and a Jatropha curcas mosaic virus (a virus occurring only in southern India) DNA-B component were identified. Consistent with earlier studies of cotton in southern Asia, only a single species of betasatellite, CLCuMuB, was identified. The diversity of alphasatellites was much greater, with many previously unknown species, in the non-cultivated cotton species than in G. hirsutum. Inoculation of newly identified components showed them to be competent for symptomatic infection of Nicotiana benthamiana plants. The significance of the findings with respect to our understanding of the role of host selection in virus diversity in crops and the geographical spread of viruses by human activity are discussed.

  5. Genome-wide analysis of the WRKY transcription factor gene family in Gossypium raimondii and the expression of orthologs in cultivated tetraploid cotton

    Directory of Open Access Journals (Sweden)

    Caiping Cai

    2014-04-01

    Full Text Available WRKY proteins are members of a family of transcription factors in higher plants that function in plant responses to various physiological processes. We identified 120 candidate WRKY genes from Gossypium raimondii with corresponding expressed sequence tags in at least one of four cotton species, Gossypium hirsutum, Gossypium barbadense, Gossypium arboreum, and G. raimondii. These WRKY members were anchored on 13 chromosomes in G. raimondii with uneven distribution. Phylogenetic analysis showed that WRKY candidate genes can be classified into three groups, with 20 members in group I, 88 in group II, and 12 in group III. The 88 genes in group II were further classified into five subgroups, groups IIa–e, containing 7, 16, 37, 15, and 13 members, respectively. We characterized diversity in amino acid residues in the WRKY domain and/or other zinc finger motif regions in the WRKY proteins. The expression patterns of WRKY genes revealed their important roles in diverse functions in cotton developmental stages of vegetative and reproductive growth and stress response. Structural and expression analyses show that WRKY proteins are a class of important regulators of growth and development and play key roles in response to stresses in cotton.

  6. Genome-wide analysis of the WRKY transcription factor gene family in Gossypium raimondii and the expression of orthologs in cultivated tetraploid cotton

    Institute of Scientific and Technical Information of China (English)

    Caiping; Cai; Erli; Niu; Hao; Du; Liang; Zhao; Yue; Feng; Wangzhen; Guo

    2014-01-01

    WRKY proteins are members of a family of transcription factors in higher plants that function in plant responses to various physiological processes.We identified 120 candidate WRKY genes from Gossypium raimondii with corresponding expressed sequence tags in at least one of four cotton species,Gossypium hirsutum,Gossypium barbadense,Gossypium arboreum,and G.raimondii.These WRKY members were anchored on 13 chromosomes in G.raimondii with uneven distribution.Phylogenetic analysis showed that WRKY candidate genes can be classified into three groups,with 20 members in group I,88 in group II,and 12 in group III.The88 genes in group II were further classified into five subgroups,groups IIa–e,containing 7,16,37,15,and 13 members,respectively.We characterized diversity in amino acid residues in the WRKY domain and/or other zinc finger motif regions in the WRKY proteins.The expression patterns of WRKY genes revealed their important roles in diverse functions in cotton developmental stages of vegetative and reproductive growth and stress response.Structural and expression analyses show that WRKY proteins are a class of important regulators of growth and development and play key roles in response to stresses in cotton.

  7. Genetic diversity, population structure and marker trait associations for seed quality traits in cotton (Gossypium hirsutum)

    Indian Academy of Sciences (India)

    Ashok Badigannavar; Gerald O. Myers

    2015-03-01

    Cottonseed contains 16% seed oil and 23% seed protein by weight. High levels of palmitic acid provides a degree of stability to the oil, while the presence of bound gossypol in proteins considerably changes their properties, including their biological value. This study uses genetic principles to identify genomic regions associated with seed oil, protein and fibre content in upland cotton cultivars. Cotton association mapping panel representing the US germplasm were genotyped using amplified fragment length polymorphism markers, yielding 234 polymorphic DNA fragments. Phenotypic analysis showed high genetic variability for the seed traits, seed oil range from 6.47–25.16%, protein from 1.85–28.45% and fibre content from 15.88–37.12%. There were negative correlations between seed oil and protein content. With reference to genetic diversity, the average estimate of ST was 8.852 indicating a low level of genetic differentiation among subpopulations. The AMOVA test revealed that variation was 94% within and 6% among subpopulations. Bayesian population structure identified five subpopulations and was in agreement with their geographical distribution. Among the mixed models analysed, mixed linear model (MLM) identified 21 quantitative trait loci for lint percentage and seed quality traits, such as seed protein and oil. Establishing genetic diversity, population structure and marker trait associations for the seed quality traits could be valuable in understanding the genetic relationships and their utilization in breeding programmes.

  8. Influence of Soil Temperature on Meloidogyne incognita Resistant and Susceptible Cotton, Gossypium hirsutum.

    Science.gov (United States)

    Carter, W W

    1982-07-01

    The degree of resistance by a cotton plant to Meloidogyne incognita is affected by soil temperature, particularly in moderately resistant cultivars, The total number of nematodes in the resistant and moderately resistant rools at 35 C was equal to, or greater than, the number in susceptible roots at 20, 25, or 30 C. A shift in numbers to developing and egg-bearing forms of nematodes in the susceptible cultivar as tentperature increased indicates development was affected by temperature rather than by genetic resistance mechanisms. However, the nematode resistant cultivar did not support maturation of nematodes until a soil tempurature of 35 C was attained. This indicated that resistance mechanisms are partially repressed at 35 C and differences in nematode development cannot be explained in terms of accumulated heat units. The moderately resistant cultivar was significantly more sensitive to the effects of high temperature than was the resistant cultivar.

  9. Influence of Soil Temperature on Meloidogyne incognita Resistant and Susceptible Cotton, Gossypium hirsutum

    OpenAIRE

    Carter, William W.

    1982-01-01

    The degree of resistance by a cotton plant to Meloidogyne incognita is affected by soil temperature, particularly in moderately resistant cultivars, The total number of nematodes in the resistant and moderately resistant rools at 35 C was equal to, or greater than, the number in susceptible roots at 20, 25, or 30 C. A shift in numbers to developing and egg-bearing forms of nematodes in the susceptible cultivar as tentperature increased indicates development was affected by temperature rather ...

  10. Cell synchrony and chromosomal protocols for somatic cells of cotton gossypium hirsutum

    Energy Technology Data Exchange (ETDEWEB)

    Van`t Hof, J.; Lamm, S.S.

    1994-10-10

    The intent of this pamphlet is to share information with others who are interested in useful protocols for cotton cytogenetics and cytology. The protocols described are a beginning effort and they are expected to be improved. All methods, results and data given pertain to cultivar MD 51ne. We are not satisfied with our results of in situ hybridization.

  11. Isolation and Expression Analysis of Two Genes Encoding Cinnamate 4-Hydroxylase from Cotton (Gossypium hirsutum)

    Institute of Scientific and Technical Information of China (English)

    NI Zhi-yong; LI Bo; Neumann MPeter; L Meng; FAN Ling

    2014-01-01

    Two genes (GhC4H1 and GhC4H2) that encode putative cotton cinnamate 4-hydroxylases that catalyze the second step in the phenylpropanoid pathway were isolated from developing cotton ifbers. GhC4H1 and GhC4H2 each contain open reading frames of 1 518 base pairs (bp) in length and both encode proteins consisting of 505 amino acid residues. They are 90.89%identical to each other at the amino acid sequence level and belong to class I of plant C4Hs. GhC4H1 and GhC4H2 genomic DNA are 2 247 and 2 161 bp long, respectively, and contain two introns located at conserved positions relative to the coding sequence. GhC4H1 and GhC4H2 promoters were isolated and found to contain many cis-elements (boxes P, L and AC-I element) previously identiifed in the promoters of other phenylpropanoid pathway genes. Histochemical staining showed GUS expression driven by the GhC4H1 and GhC4H2 promoters in ovules and ifbers tissues. GhC4H1 and GhC4H2 were also widely expressed in other cotton tissues. GhC4H2 expression reached its highest level during the elongation stage of ifber development, whereas GhC4H1 expression increased during the secondary wall development period in cotton ifbers. Our results contribute to a better understanding of the biochemical role of GhC4H1 and GhC4H2 in cotton ifber development.

  12. Somatic Embryogenesis and Plant Regeneration from Two Recalcitrant Genotypes of Gossypium hirsutum L.

    Institute of Scientific and Technical Information of China (English)

    WANG Yan-xia; WANG Xing-fen; MA Zhi-ying; ZHANG Gui-yin; HAN Gai-ying

    2006-01-01

    An improved protocol has been developed for somatic embryogenesis and plant regeneration of recalcitrant cotton cultivars. High callus frequencies and embryogenic tissue were developed in MSB medium supplemented with gradient concentrations of KT and 2,4-D, their concentration decreasing from 0.1 to 0.01 mg L-1. Somatic embryos were successfully incubated in 1/2 macronutrient MSB suspension supplemented with 0.5 g L-1 glutamine and 0.5 g L-1 asparagine. Decrease in macronutrient concentration of MSB significantly alleviated browning and was beneficial to suspension cells.Transformation of somatic embryos into plants was induced in MSB medium supplemented with 3% sucrose, 0.5 g L-1 glutamine, 0.5 g L-1 asparagine, and 6.0 g L-1 agar. The effect of sucrose as carbohydrate was better than that of glucose for plant germination. Using this protocol, regenerated plantlets from the CCRI521 and Zhongzhi86-6 reached to as much as 19.6 and 18.5% somatic embryos, respectively.

  13. Bemisia tabaci (Hemiptera: Aleyrodidae) nymphal feeding in cotton (Gossypium hirsutum) leaves

    Institute of Scientific and Technical Information of China (English)

    CHANG-CHI CHU; DENNIS A. MARGOSAN; JAMES S. BUCKNER; THOMAS P. FREEMAN; THOMAS J. HENNEBERRY

    2007-01-01

    We used brightfield electron microscopy (BEM), differential interference contrast microscopy (DICM), scanning electron microscopy (SEM), transmission electron microscopy (TEM), and confocal laser scanning microscopy (CLSM) to investigate the stylet pathways of Bemisia tabaci during nymphal feeding behavior in cotton leaves beginning with penetration of the abaxial leaf surface and ending with stylers in sieve tubes in phloem tissues. Most nymphal stylets within salivary sheaths penetrating leaf tissues made complex turns and developed more than one salivary sheath branch before ending in sieve tubes. The external morphology of the salivary sheaths and their routes between and through leaf cells are described during the present study. Results showed the presence of the stylet within the sieve tubes. B. tabaci nymphs may remove stylets and feed in different sieve tubes.Ten short movies showing the progression of the stylet penetrations from adaxial surface to the sieve tubes are attached to Figures 8-15. The report and movies can be viewed from the internet. Download the movies to a local drive in your compute rfirs tfor fast upload. The movies are posted on theweb sitehttp ://www.ars.usda.gov/Services/docs.htm? docid= 14629.The movies can be used as a teaching aid in biology classes.

  14. Response and Tolerance Mechanism of Cotton Gossypium hirsutum L. to Elevated Temperature Stress: A Review

    Science.gov (United States)

    Zahid, Kashif Rafiq; Ali, Farhan; Shah, Farooq; Younas, Muhammad; Shah, Tariq; Shahwar, Durri; Hassan, Waseem; Ahmad, Zahoor; Qi, Chao; Lu, Yanli; Iqbal, Amjad; Wu, Wei

    2016-01-01

    Cotton is an important multipurpose crop which is highly sensitive to both biotic and abiotic stresses. Proper management of this cash crop requires systematic understanding of various environmental conditions that are vital to yield and quality. High temperature stress can severely affect the viability of pollens and anther indehiscence, which leads to significant yield losses. Cotton can respond to withstand adverse environmental condition in several phases among which the accumulation of chemicals is extremely vital. Calcium, kinases, reactive oxygen species, carbohydrate, transcription factors, gene expression regulation, and plant hormones signaling pathways are playing a handy role in activating the major genes responsible to encounter and defend elevated temperature stress. The production of heat shock proteins is up-regulated when crops are unleashed to high temperature stress. Molecular breeding can play a functional role to identify superior genes for all the important attributes as well as provide breeder ready markers for developing ideotypes. The development of high-temperature resistant transgenic cultivars of cotton can grant a stability benefit and can also ameliorate the production capacity in response to elevated temperature. PMID:27446165

  15. Leaf ontogeny strongly influences photosynthetic tolerance to drought and high temperature in Gossypium hirsutum

    Science.gov (United States)

    Temperature and drought are major abiotic limitations to crop productivity worldwide. While abiotic stress physiology research has focused primarily on fully expanded leaves, no studies have investigated photosynthetic tolerance to concurrent drought and high temperature during leaf ontogeny. To add...

  16. GhNAC18, a novel cotton (Gossypium hirsutum L.) NAC gene, is ...

    African Journals Online (AJOL)

    EVANS

    group of putative cis-acting elements especially, the light and stress responsive elements, indicating that it may have a .... synthesized from 2 µg of RNA in a 20 reaction volume using .... photosynthetic efficiency and enhanced water retention.

  17. Genetic diversity in the environmental conditioning of gossypium hirsutum and gossiypium barbadense cultivars

    Science.gov (United States)

    Enzyme adaptations to temperature occur constantly as temperature patterns modulate diurnally and seasonally. These adaptations entail qualitative and/or quantitative metabolic changes that often provide a competitive advantage, impact migration to new environments, and effect the survival of the s...

  18. Combining ability analysis in intraspecific F1 diallel cross of upland cotton (Gossypium hirsutum L.

    Directory of Open Access Journals (Sweden)

    K.S. Usharani*, P. Vindhiyavarman and P. Amala Balu

    2014-09-01

    Full Text Available Diallel analysis was carried out by involving nine parents and their 72 cross combinations in upland cotton for assessing their combining ability for yield and its component characters. Variance due to parents and hybrids showed significant differences between all the characters studied except number of bolls, boll weight, single plant yield, lint index and seed index. Significance of variance in parents versus hybrids interaction provides adequacy for comparing the heterotic expression for all the characters except boll weight, ginning per cent, lint index and seed index. The GCA variances were larger than those of SCA for all the traits except number of bolls per plant, indicating the preponderance of additive action. The parents MCU 5 and MCU 7 were proved to be good general combiners for single plant yield and other economic traits and hence need to be included in the yield improvement programmes. The hybrid combinations viz., MCU 5 x MCU 7, Khandwa 2 x Suraj, KC 2 x MCU 5, Anjali x MCU 7 and Anjali x Suraj recorded superior per se performance for number of bolls, boll weight and single plant yield and other characters. Among these crosses KC 2 x MCU 5, Anjali x Suraj and Anjali x MCU 7 exhibited additive type gene action with one good general combining ability parent for number of bolls, boll weight and lint index respectively. Hence, selection can be made in these crosses in early generation itself.

  19. How to be sweet? Extra floral nectar allocation by Gossypium hirsutum fits optimal defense theory predictions

    NARCIS (Netherlands)

    Wäckers, F.L.; Bonifay, C.

    2004-01-01

    Plants employ nectar for two distinct functions. Floral nectar has traditionally been viewed in the context of pollination. Extrafloral nectar on the other hand, can act as an indirect defense, allowing the plant to recruit predators and parasitoids. Whereas this makes for a clear-cut categorization

  20. Global gene expression in cotton (Gossypium hirsutum L.) leaves to waterlogging stress.

    Science.gov (United States)

    Zhang, Yanjun; Kong, Xiangqiang; Dai, Jianlong; Luo, Zhen; Li, Zhenhuai; Lu, Hequan; Xu, Shizhen; Tang, Wei; Zhang, Dongmei; Li, Weijiang; Xin, Chengsong; Dong, Hezhong

    2017-01-01

    Cotton is sensitive to waterlogging stress, which usually results in stunted growth and yield loss. To date, the molecular mechanisms underlying the responses to waterlogging in cotton remain elusive. Cotton was grown in a rain-shelter and subjected to 0 (control)-, 10-, 15- and 20-d waterlogging at flowering stage. The fourth-leaves on the main-stem from the top were sampled and immediately frozen in liquid nitrogen for physiological measurement. Global gene transcription in the leaves of 15-d waterlogged plants was analyzed by RNA-Seq. Seven hundred and ninety four genes were up-regulated and 1018 genes were down-regulated in waterlogged cotton leaves compared with non-waterlogged control. The differentially expressed genes were mainly related to photosynthesis, nitrogen metabolism, starch and sucrose metabolism, glycolysis and plant hormone signal transduction. KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis indicated that most genes related to flavonoid biosynthesis, oxidative phosphorylation, amino acid metabolism and biosynthesis as well as circadian rhythm pathways were differently expressed. Waterlogging increased the expression of anaerobic fermentation related genes, such as alcohol dehydrogenase (ADH), but decreased the leaf chlorophyll concentration and photosynthesis by down-regulating the expression of photosynthesis related genes. Many genes related to plant hormones and transcription factors were differently expressed under waterlogging stress. Most of the ethylene related genes and ethylene-responsive factor-type transcription factors were up-regulated under water-logging stress, suggesting that ethylene may play key roles in the survival of cotton under waterlogging stress.

  1. In-ovulo embryo culture and seedling development of cotton (Gossypium hirsutum L.).

    Science.gov (United States)

    Stewart, J M; Hsu, C L

    1977-01-01

    A convenient and reliable method for culturing cotton embryos is needed to obtain interspecific hybrids of this genus. C.A. Beasley and I.P. Ting (Amer. J. Bot. 60, 130, 1973) developed a phytohormone-supplemented medium (BTP) upon which the growth of ovules was similar that of in situ ovules. This medium was examined for in-ovulo embryo culture. Although good ovule growth occurred on BTP no embryos developed to maturity. However, when the medium was supplemented with NH 4 (+) , more than 50% of the ovules produced mature embryos, and many of these germinated precociously after 8-10 weeks of culture. After germination seedlings were established on a separate medium designed to give balanced root and shoot growth. Subsequently young plants could be transferred to pots for greenhouse culture.

  2. Glufosinate does not affect floral morphology and pollen viability in glufosinate-resistant cotton (Gossypium hirsutum)

    Science.gov (United States)

    Studies were conducted to determine whether glufosinate treatments to glufosinate-resistant cotton caused changes in floral morphology, pollen viability, and seed set. Four glufosinate treatments were included: (1) glufosinate applied postemergence over the top (POST) at the four-leaf stage, (2) glu...

  3. Effect of Implantation Machine Parameters on N+ ion Implantation for Upland Cotton (Gossypium hirsutum L.) Pollen

    Institute of Scientific and Technical Information of China (English)

    YUE Jieyu; YU Lixiang; WU Yuejin; TANG Canming

    2008-01-01

    Effect of parameters of ion implantation machine,including ion energy,total dose,dose rate,impulse energy and implantation interval on the pollen grains of upland cotton implanted with nitrogen ion beam were studied.The best parameters were screened out.The results also showed that the vacuum condition before the nitrogen ion implantation does not affect the pollen viability.

  4. A draft physical map of a D-genome cotton species (Gossypium raimondii

    Directory of Open Access Journals (Sweden)

    Kudrna Dave

    2010-06-01

    Full Text Available Abstract Background Genetically anchored physical maps of large eukaryotic genomes have proven useful both for their intrinsic merit and as an adjunct to genome sequencing. Cultivated tetraploid cottons, Gossypium hirsutum and G. barbadense, share a common ancestor formed by a merger of the A and D genomes about 1-2 million years ago. Toward the long-term goal of characterizing the spectrum of diversity among cotton genomes, the worldwide cotton community has prioritized the D genome progenitor Gossypium raimondii for complete sequencing. Results A whole genome physical map of G. raimondii, the putative D genome ancestral species of tetraploid cottons was assembled, integrating genetically-anchored overgo hybridization probes, agarose based fingerprints and 'high information content fingerprinting' (HICF. A total of 13,662 BAC-end sequences and 2,828 DNA probes were used in genetically anchoring 1585 contigs to a cotton consensus genetic map, and 370 and 438 contigs, respectively to Arabidopsis thaliana (AT and Vitis vinifera (VV whole genome sequences. Conclusion Several lines of evidence suggest that the G. raimondii genome is comprised of two qualitatively different components. Much of the gene rich component is aligned to the Arabidopsis and Vitis vinifera genomes and shows promise for utilizing translational genomic approaches in understanding this important genome and its resident genes. The integrated genetic-physical map is of value both in assembling and validating a planned reference sequence.

  5. cDNA-AFLP-based genetical genomics in cotton fibers.

    Science.gov (United States)

    Claverie, Michel; Souquet, Marlène; Jean, Janine; Forestier-Chiron, Nelly; Lepitre, Vincent; Pré, Martial; Jacobs, John; Llewellyn, Danny; Lacape, Jean-Marc

    2012-03-01

    Genetical genomics, or genetic analysis applied to gene expression data, has not been widely used in plants. We used quantitative cDNA-AFLP to monitor the variation in the expression level of cotton fiber transcripts among a population of inter-specific Gossypium hirsutum × G. barbadense recombinant inbred lines (RILs). Two key fiber developmental stages, elongation (10 days post anthesis, dpa), and secondary cell wall thickening (22 dpa), were studied. Normalized intensity ratios of 3,263 and 1,201 transcript-derived fragments (TDFs) segregating over 88 RILs were analyzed for quantitative trait loci (QTL) mapping for the 10 and 22 dpa fibers, respectively. Two-thirds of all TDFs mapped between 1 and 6 eQTLs (LOD > 3.5). Chromosome 21 had a higher density of eQTLs than other chromosomes in both data sets and, within chromosomes, hotspots of presumably trans-acting eQTLs were identified. The eQTL hotspots were compared to the location of phenotypic QTLs for fiber characteristics among the RILs, and several cases of co-localization were detected. Quantitative RT-PCR for 15 sequenced TDFs showed that 3 TDFs had at least one eQTL at a similar location to those identified by cDNA-AFLP, while 3 other TDFs mapped an eQTL at a similar location but with opposite additive effect. In conclusion, cDNA-AFLP proved to be a cost-effective and highly transferable platform for genome-wide and population-wide gene expression profiling. Because TDFs are anonymous, further validation and interpretation (in silico analysis, qPCR gene profiling) of the eQTL and eQTL hotspots will be facilitated by the increasing availability of cDNA and genomic sequence resources in cotton.

  6. 棉花纤维和衣分等基因系的收集和遗传学研究%Genetics and the Genetic Collection of Isogenic Lines of Seed Lint Type and Fiber Output in Cotton

    Institute of Scientific and Technical Information of China (English)

    D. A. MUSAEV; M. F. ABZALOV; A. S. ALMATOV; T. TURABEKOV; S. T. MUSAEVA; G. N. FATKHULLAEVA; N. G. GUBANOVA; Kh. A. AKHMEDOV

    2002-01-01

    @@ As a result of long standing investigation on urgent problems of amphidiploid cotton species Gossypium hirsutum genetics, for the first time genetic determination of the most important traits has been established, and the unique genetic collection of homozygous isogenic lines has been developed. A scientifically wellfounded theory about combined types of polygene interaction in genetic determination of tracts in cotton, has been developed.

  7. Functional divergence of GhCFE5 homoeologs revealed in cotton fiber and Arabidopsis root cell development.

    Science.gov (United States)

    Lv, Fenni; Li, Peng; Zhang, Rui; Li, Nina; Guo, Wangzhen

    2016-04-01

    In GhCFE5 homoeologs, GhCFE5D interacted with more actin homologs and stronger interaction activity than GhCFE5A. GhCFE5D - but not GhCFE5A -overexpression severely disrupted actin cytoskeleton organization and significantly suppressed cell elongation. Homoeologous genes are common in polyploid plants; however, their functional divergence is poorly elucidated. Allotetraploid Upland cotton (Gossypium hirsutum, AADD) is the most widely cultivated cotton; accounting for more than 90 % of the world's cotton production. Here, we characterized GhCFE5A and GhCFE5D homoeologs from G. hirsutum acc TM-1. GhCFE5 homoeologs are expressed preferentially in fiber cells; and a significantly greater accumulation of GhCFE5A mRNA than GhCFE5D mRNA was found in all tested tissues. Overexpression of GhCFE5D but not GhCFE5A seriously inhibits the Arabidopsis hypocotyl and root cell elongation. Yeast two-hybrid assay and bimolecular fluorescence complementation (BiFC) analysis showed that compared with GhCFE5A, GhCFE5D interacts with more actin homologs and has a stronger interaction activity both from Arabidopsis and Upland cotton. Interestingly, subcellular localization showed that GhCFE5 resides on the cortical endoplasmic reticulum (ER) network and is colocalized with actin cables. The interaction activities between GhCFE5 homoeologs and actin differ in their effects on F-actin structure in transgenic Arabidopsis root cells. The F-actin changed direction from vertical to lateral, and the actin cytoskeleton organization was severely disrupted in GhCFE5D-overexpressing root cells. These data support the functional divergence of GhCFE5 homoeologs in the actin cytoskeleton structure and cell elongation, implying an important role for GhCFE5 in the evolution and selection of cotton fiber.

  8. Genetic mapping and characteristics of genes specifically or preferentially expressed during fiber development in cotton.

    Directory of Open Access Journals (Sweden)

    Ximei Li

    Full Text Available Cotton fiber is an ideal model to study cell elongation and cell wall construction in plants. During fiber development, some genes and proteins have been reported to be specifically or preferentially expressed. Mapping of them will reveal the genomic distribution of these genes, and will facilitate selection in cotton breeding. Based on previous reports, we designed 331 gene primers and 164 protein primers, and used single-strand conformation polymorphism (SSCP to map and integrate them into our interspecific BC(1 linkage map. This resulted in the mapping of 57 loci representing 51 genes or proteins on 22 chromosomes. For those three markers which were tightly linked with quantitative trait loci (QTLs, the QTL functions obtained in this study and gene functions reported in previous reports were consistent. Reverse transcription-polymerase chain reaction (RT-PCR analysis of 52 polymorphic functional primers showed that 21 gene primers and 17 protein primers had differential expression between Emian22 (Gossypium hirsutum and 3-79 (G. barbadense. Both RT-PCR and quantitative real-time PCR (qRT-PCR analyses of the three markers tightly linked with QTLs were consistent with QTL analysis and field experiments. Gene Ontology (GO categorization revealed that almost all 51 mapped genes belonged to multiple categories that contribute to fiber development, indicating that fiber development is a complex process regulated by various genes. These 51 genes were all specifically or preferentially expressed during fiber cell elongation and secondary wall biosynthesis. Therefore, these functional gene-related markers would be beneficial for the genetic improvement of cotton fiber length and strength.

  9. Gene expression profile analysis of Ligon lintless-1 (Li1) mutant reveals important genes and pathways in cotton leaf and fiber development.

    Science.gov (United States)

    Ding, Mingquan; Jiang, Yurong; Cao, Yuefen; Lin, Lifeng; He, Shae; Zhou, Wei; Rong, Junkang

    2014-02-10

    Ligon lintless-1 (Li1) is a monogenic dominant mutant of Gossypium hirsutum (upland cotton) with a phenotype of impaired vegetative growth and short lint fibers. Despite years of research involving genetic mapping and gene expression profile analysis of Li1 mutant ovule tissues, the gene remains uncloned and the underlying pathway of cotton fiber elongation is still unclear. In this study, we report the whole genome-level deep-sequencing analysis of leaf tissues of the Li1 mutant. Differentially expressed genes in leaf tissues of mutant versus wild-type (WT) plants are identified, and the underlying pathways and potential genes that control leaf and fiber development are inferred. The results show that transcription factors AS2, YABBY5, and KANDI-like are significantly differentially expressed in mutant tissues compared with WT ones. Interestingly, several fiber development-related genes are found in the downregulated gene list of the mutant leaf transcriptome. These genes include heat shock protein family, cytoskeleton arrangement, cell wall synthesis, energy, H2O2 metabolism-related genes, and WRKY transcription factors. This finding suggests that the genes are involved in leaf morphology determination and fiber elongation. The expression data are also compared with the previously published microarray data of Li1 ovule tissues. Comparative analysis of the ovule transcriptomes of Li1 and WT reveals that a number of pathways important for fiber elongation are enriched in the downregulated gene list at different fiber development stages (0, 6, 9, 12, 15, 18dpa). Differentially expressed genes identified in both leaf and fiber samples are aligned with cotton whole genome sequences and combined with the genetic fine mapping results to identify a list of candidate genes for Li1.

  10. 棉花重要农艺性状基因的分子标记筛选及标记辅助选择育种%Molecular Tagging of Fiber Quality and Yield QTLs and Their MAS Breeding in China

    Institute of Scientific and Technical Information of China (English)

    Tian-zhen ZHANG

    2002-01-01

    @@ There are great progresses obtained in cotton genomic research in China. 1 ) DNA marker screening. Many DNA markers such as RFLP,RAPD, SSR, ISSR etc. have been used. A molecular linkage map was constructed with 58doubled and/or haploid plants from the cross of the two cultivated allotetraploid cotton,Gossypium hirsutum L.

  11. Chromosomal Locations of 5S and 45S rDNA in Gossypium Genus and Its Phylogenetic Implications Revealed by FISH.

    Science.gov (United States)

    Gan, Yimei; Liu, Fang; Chen, Dan; Wu, Qiong; Qin, Qin; Wang, Chunying; Li, Shaohui; Zhang, Xiangdi; Wang, Yuhong; Wang, Kunbo

    2013-01-01

    We investigated the locations of 5S and 45S rDNA in Gossypium diploid A, B, D, E, F, G genomes and tetraploid genome (AD) using multi-probe fluorescent in situ hybridization (FISH) for evolution analysis in Gossypium genus. The rDNA numbers and sizes, and synteny relationships between 5S and 45S were revealed using 5S and 45S as double-probe for all species, and the rDNA-bearing chromosomes were identified for A, D and AD genomes with one more probe that is single-chromosome-specific BAC clone from G. hirsutum (A1D1). Two to four 45S and one 5S loci were found in diploid-species except two 5S loci in G. incanum (E4), the same as that in tetraploid species. The 45S on the 7th and 9th chromosomes and the 5S on the 9th chromosomes seemed to be conserved in A, D and AD genomes. In the species of B, E, F and G genomes, the rDNA numbers, sizes, and synteny relationships were first reported in this paper. The rDNA pattern agrees with previously reported phylogenetic history with some disagreements. Combined with the whole-genome sequencing data from G. raimondii (D5) and the conserved cotton karyotype, it is suggested that the expansion, decrease and transposition of rDNA other than chromosome rearrangements might occur during the Gossypium evolution.

  12. Evolutionary Conservation and Divergence of Gene Coexpression Networks in Gossypium (Cotton) Seeds.

    Science.gov (United States)

    Hu, Guanjing; Hovav, Ran; Grover, Corrinne E; Faigenboim-Doron, Adi; Kadmon, Noa; Page, Justin T; Udall, Joshua A; Wendel, Jonathan F

    2016-12-01

    The cotton genus (Gossypium) provides a superior system for the study of diversification, genome evolution, polyploidization, and human-mediated selection. To gain insight into phenotypic diversification in cotton seeds, we conducted coexpression network analysis of developing seeds from diploid and allopolyploid cotton species and explored network properties. Key network modules and functional associations were identified related to seed oil content and seed weight. We compared species-specific networks to reveal topological changes, including rewired edges and differentially coexpressed genes, associated with speciation, polyploidy, and cotton domestication. Network comparisons among species indicate that topologies are altered in addition to gene expression profiles, indicating that changes in transcriptomic coexpression relationships play a role in the developmental architecture of cotton seed development. The global network topology of allopolyploids, especially for domesticated G. hirsutum, resembles the network of the A-genome diploid more than that of the D-genome parent, despite its D-like phenotype in oil content. Expression modifications associated with allopolyploidy include coexpression level dominance and transgressive expression, suggesting that the transcriptomic architecture in polyploids is to some extent a modular combination of that of its progenitor genomes. Among allopolyploids, intermodular relationships are more preserved between two different wild allopolyploid species than they are between wild and domesticated forms of a cultivated cotton, and regulatory connections of oil synthesis-related pathways are denser and more closely clustered in domesticated vs. wild G. hirsutum. These results demonstrate substantial modification of genic coexpression under domestication. Our work demonstrates how network inference informs our understanding of the transcriptomic architecture of phenotypic variation associated with temporal scales ranging from

  13. African Journal of Biotechnology - Vol 10, No 59 (2011)

    African Journals Online (AJOL)

    Study on combining ability, heterosis and genetic parameters of yield traits in rice ... Yield and fiber quality properties of cotton (Gossypium hirsutum L.) under water ... rock phosphate on yield and phosphorus and nitrogen uptake of maize crop ...

  14. Developing hybrid cotton (Gossypium spp.) using honey bees as pollinators and the Roundup Ready® Phenotype as the selection trait

    Science.gov (United States)

    Cotton (Gossypium spp.) is the most important textile fiber crop in the United States (US). Hybrid cotton is grown in several countries but the use of hybrids in the US has been limited due to seed production costs. The objective of this study was to investigate a novel method for the production of ...

  15. Effect of late planting and shading on cellulose synthesis during cotton fiber secondary wall development.

    Directory of Open Access Journals (Sweden)

    Ji Chen

    Full Text Available Cotton-rapeseed or cotton-wheat double cropping systems are popular in the Yangtze River Valley and Yellow River Valley of China. Due to the competition of temperature and light resources during the growing season of double cropping system, cotton is generally late-germinating and late-maturing and has to suffer from the coupling of declining temperature and low light especially in the late growth stage. In this study, late planting (LP and shading were used to fit the coupling stress, and the coupling effect on fiber cellulose synthesis was investigated. Two cotton (Gossypium hirsutum L. cultivars were grown in the field in 2010 and 2011 at three planting dates (25 April, 25 May and 10 June each with three shading levels (normal light, declined 20% and 40% PAR. Mean daily minimum temperature was the primary environmental factor affected by LP. The coupling of LP and shading (decreased cellulose content by 7.8%-25.5% produced more severe impacts on cellulose synthesis than either stress alone, and the effect of LP (decreased cellulose content by 6.7%-20.9% was greater than shading (decreased cellulose content by 0.7%-5.6%. The coupling of LP and shading hindered the flux from sucrose to cellulose by affecting the activities of related cellulose synthesis enzymes. Fiber cellulose synthase genes expression were delayed under not only LP but shading, and the coupling of LP and shading markedly postponed and even restrained its expression. The decline of sucrose-phosphate synthase activity and its peak delay may cause cellulose synthesis being more sensitive to the coupling stress during the later stage of fiber secondary wall development (38-45 days post-anthesis. The sensitive difference of cellulose synthesis between two cultivars in response to the coupling of LP and shading may be mainly determined by the sensitiveness of invertase, sucrose-phosphate synthase and cellulose synthase.

  16. Meiosis in a triploid hybrid of Gossypium: high frequency of secondary bipolar spindles at metaphase II

    Indian Academy of Sciences (India)

    Mosareza Vafaie-Tabar; Shanti Chandrashekaran

    2007-01-01

    Studies on meiosis in pollen mother cells (PMCs) of a triploid interspecific hybrid ($3x = 39$ chromosomes, AAD) between tetraploid Gossypium hirsutum ($4n = 2x = 52$,AADD) and diploid G. arboreum ($2n = 2x = 26$,AA) are reported. During meiotic metaphase I, 13 AA bivalents and 13 D univalents are expected in the hybrid. However, only 28% of the PMCs had this expected configuration. The rest of the PMCs had between 8 and 12 bivalents and between 12 and 17 univalents. Univalents lagged at anaphase I, and at metaphase II one or a group of univalents remained scattered in the cytoplasm and failed to assemble at a single metaphase plate. Primary bipolar spindles organized around the bivalents and multivalents. In addition to the primary spindle, several secondary and smaller bipolar spindles organized themselves around individual univalents and groups of univalents. Almost all (97%) of the PMCs showed secondary spindles. Each spindle functioned independently and despite their multiple numbers in a cell, meiosis I proceeded normally, with polyad formation. These observations strongly support the view that in plant meiocytes bilateral kinetochore symmetry is not required for establishing a bipolar spindle and that single unpaired chromosomes can initiate and stabilize the formation of a functional bipolar spindle.

  17. Developing Accurate Spatial Maps of Cotton Fiber Quality Parameters

    Science.gov (United States)

    Awareness of the importance of cotton fiber quality (Gossypium, L. sps.) has increased as advances in spinning technology require better quality cotton fiber. Recent advances in geospatial information sciences allow an improved ability to study the extent and causes of spatial variability in fiber p...

  18. Gossypolhemiquinone, a dimeric sesquiterpenoid identified in cotton (Gossypium)

    Science.gov (United States)

    The report that the cotton leaf perforator, Bucculatrix thurberiella, is one of the few insect herbivores to attack Gossypium thurberi prompted an investigation of the terpenoids present in the leaves of this wild species of cotton. Members of Gossypium produce subepidermal pigment glands in their ...

  19. Genetic Effects and Heterosis of Yield and Yield Component Traits Based on Gossypium Barbadense Chromosome Segment Substitution Lines in Two Gossypium Hirsutum Backgrounds.

    Directory of Open Access Journals (Sweden)

    Botao Li

    Full Text Available We hybridized 10 chromosome segment substitution lines (CSSLs each from two CSSL populations and produced 50 F1 hybrids according to North Carolina Design II. We analyzed the genetic effects and heterosis of yield and yield components in the F1 hybrids and parents in four environments via the additive-dominance genetic model. Yield and yield components of the CSSLs were controlled by combined additive and dominance effects, and lint percentage was mainly controlled by additive effects, but boll weight, boll number, seedcotton yield and lint yield were mainly controlled by dominance effects. We detected significant interaction effects between genetics and the environment for all yields traits. Similar interactions were detected between two CSSL populations (Pop CCRI 36 and Pop CCRI 45. Significant positive mid-parent heterosis was detected for all yield traits in both populations, and significant positive better-parent heterosis was also detected for all yield traits except lint percentage. The differences among parents were relatively small, but significant heterosis was detected for yield and yield components. Therefore, the relationship between heterosis and genetic distance for yield traits is complicated and requires further study. These CSSLs represent useful tools for improving yield and yield components in cotton.

  20. Activation of Arabidopsis seed hair development by cotton fiber-related genes.

    Directory of Open Access Journals (Sweden)

    Xueying Guan

    Full Text Available Each cotton fiber is a single-celled seed trichome or hair, and over 20,000 fibers may develop semi-synchronously on each seed. The molecular basis for seed hair development is unknown but is likely to share many similarities with leaf trichome development in Arabidopsis. Leaf trichome initiation in Arabidopsis thaliana is activated by GLABROUS1 (GL1 that is negatively regulated by TRIPTYCHON (TRY. Using laser capture microdissection and microarray analysis, we found that many putative MYB transcription factor and structural protein genes were differentially expressed in fiber and non-fiber tissues. Gossypium hirsutum MYB2 (GhMYB2, a putative GL1 homolog, and its downstream gene, GhRDL1, were highly expressed during fiber cell initiation. GhRDL1, a fiber-related gene with unknown function, was predominately localized around cell walls in stems, sepals, seed coats, and pollen grains. GFP:GhRDL1 and GhMYB2:YFP were co-localized in the nuclei of ectopic trichomes in siliques. Overexpressing GhRDL1 or GhMYB2 in A. thaliana Columbia-0 (Col-0 activated fiber-like hair production in 4-6% of seeds and had on obvious effects on trichome development in leaves or siliques. Co-overexpressing GhRDL1 and GhMYB2 in A. thaliana Col-0 plants increased hair formation in ∼8% of seeds. Overexpressing both GhRDL1 and GhMYB2 in A. thaliana Col-0 try mutant plants produced seed hair in ∼10% of seeds as well as dense trichomes inside and outside siliques, suggesting synergistic effects of GhRDL1 and GhMYB2 with try on development of trichomes inside and outside of siliques and seed hair in A. thaliana. These data suggest that a different combination of factors is required for the full development of trichomes (hairs in leaves, siliques, and seeds. A. thaliana can be developed as a model a system for discovering additional genes that control seed hair development in general and cotton fiber in particular.

  1. Morphogenesis Model-Based Virtual Growth System of Cotton (Gossypium hirsutum L.)%基于形态模型的棉花(Gossypium hirsutum L.)虚拟生长系统研究

    Institute of Scientific and Technical Information of China (English)

    周娟; 周治国; 陈兵林; 孟亚利

    2009-01-01

    [Objective] Modeling dynamics of each organ size in cotton growth process, then a virtual growth system for cotton was implemented to provide a technical basis for research of virtual farming. [Method] Based on the potted plant research of cotton variety, sowing date, nitrogen, water and DPC in a summer seasons of 2005 and 2006, with the systematic analysis principle and mathematical modeling technique applied to cotton morphogenesis, a morphological model, which includes several sub-models of leaf, stem, boll, and so on, was developed by the quantitative analyses of experimental data. And a virtual growth system for cotton was implemented with usage of OpenGL for 3D graphic and MFC for graphical user interface. [Result] The results showed that the dynamic change of each organ size could be characterized by logistic equation in relation to GDD, nitrogen, water and DPC. The model was validated by the data from 2006, and the mean RMSEs were 0.85, 0.82, 0.87, 0.57, 0.086, 0.65, 0.74, 0.8, 0.73, 0. 016, 0.36 and 0.4 cm for main stem leaf length and width, main stem leaf stalk length, main stem internode length and diameter, fruiting branch leaf length and width, fruiting branch leaf stalk length, fruiting node length and diameter, and boll length and width, respectively. Then NURBS was applied to simulate the shape of cotton leaf and boll, internode and petiole were treated as cylinder. Finally, a cotton growth system which comprises of models, database and interface was implemented with OpenGL on the platform of Microsoft Visual C++ 6.0. [Conclusion] The system can be used to simulate the real growth process of each organ, individual and group with some inputs.%[目的]基于棉花形态器官形成过程的定量描述,模拟棉花三维生长过程,为虚拟棉作研究提供技术基础.[方法]基于2005-2006年棉花品种、播期、氮素、水分和DPC化控试验,将系统分析方法和数学建模技术应用于棉花植株的形态建成,通过对棉花形态数据的定量分析,构建了棉花形态建成模型,主要包括:主茎叶长宽、主茎叶柄长、主茎节间长粗、果枝叶长宽、果枝叶柄长,果节长粗以及棉铃高度和直径等模型.结合OpenGL 技术,在Visual C++6.0平台上实现了棉花虚拟生长系统VGSC(virtual growth system for cotton).[结果]棉花形态模型采用Logistic方程描述各器官尺寸随GDD(生长度日,℃·d)、氮素、水分及DPC的动态变化过程,利用2006年的试验数据对模型进行检验,棉花主茎叶长宽、主茎叶柄长、主茎节间长粗,果枝叶长宽、果枝叶柄长、果节长粗以及棉铃高度和直径的观测值与模拟值的根均方差分别为0.85、0.82、0.87、0.57、0.086、0.65、0.74、0.8、0.73、0.016、0.36和0.4 cm,模型预测性好.此外,以NURBS(non-uniform rationa1 B-spline,非均匀有理B样条)曲面模拟棉花叶片及棉铃形状,以圆柱体实现茎(节)可视化表达,构建的虚拟生长系统主要包括模型库、数据库和人机界面.[结论]用户输入系统所需的相关参数值,就可较好地模拟显示棉花器官、个体和群体的三维动态生长过程.

  2. CORRELACIONES Y ANÁLISIS DE SENDERO EN ALGODÓN (Gossypium hirsutum L. EN EL CARIBE COLOMBIANO CORRELATIONS AND PATH ANALYSIS IN COTTON (Gossypium hirsutum L. IN THE COLOMBIAN CARIBBEAN

    Directory of Open Access Journals (Sweden)

    Miguel Mariano Espitia Camacho

    2008-06-01

    Full Text Available El cultivo del algodón es la principal actividad agrícola en la economía del Caribe colombiano en el segundo semestre del año y el principal abastecedor de fibra a la industria nacional desde hace aproximadamente 60 años. El objetivo de este trabajo fue estimar las correlaciones fenotípicas, genéticas y ambientales, entre 11 caracteres agronómicos y realizar un análisis de sendero para rendimiento de fibra. Se utilizaron los datos de la evaluación agronómica de 10 genotipos de algodón en ocho ambientes del Caribe colombiano. En cada ambiente se utilizó un diseño experimental de bloques completos al azar con cuatro repeticiones. Los resultados indicaron que las correlaciones genéticas fueron superiores a las fenotípicas y ambientales. El rendimiento de fibra (REF presentó las mayores correlaciones fenotípicas, genéticas y fenotipicas parciales con el porcentaje de fibra (PFI, el rendimiento de algodón - semilla (RAS y el peso de mota (PMO, con valores de r > 0,43 (PThe cotton crop is the main agricultural activity in the economy of the colombian Caribbean in the second semester of the year and the main supplier of fibre to national industry for about 60 years. The objective of this work was to estimate the phenotypic, genetic and environmental correlations, between 11 agronomic characters and to make a path analysis for fibre yield. Data of agronomic evaluation of 10 genotypes of cotton in eight environments of the colombian Caribbean were used. In each environment experimental design at random complete blocks with four repetitions were used. The results indicated that genetic correlations were superior to phenotypic and environmental correlations. Fibre yield (FIY presented the highest phenotypic, genetic and partial phenotypic correlations with ginning percentage (GP, seed-cotton yield (SCY and boll weight (BOW with values of r > 0,43 (P<0,01. The FIP (0,810 was the cause variable that showed the greatest direct effect on the REF. The YFI can be used as selection criteria to increase the YFI in cotton.

  3. Establishment of a Multi-color Genomic in situ Hybridization Technique to Simultaneously Discriminate the Three Interspecific Hybrid Genomes in Gossypium

    Institute of Scientific and Technical Information of China (English)

    Bing Guan; Kai Wang; Bao-Liang Zhou; Wang-Zhen Guo; Tian-Zhen Zhang

    2008-01-01

    To identify alien chromosomes in recipient progenies and to analyze genome components in polyploidy, a genomic In situ hybridization (GISH) technique that is suitable for cotton was developed using increased stringency conditions. The increased stringency conditions were a combination of the four factors in the following optimized state: 100:1 ratio of blocking DNA to probe, 60% formamide wash solution, 43 =C temperature wash and a 13 min wash. Under these specific conditions using gDNA from Gossypium sturtianurn (C1C1) as a probe, strong hybridization signals were only observed on chromosomes from the C1 genome in somatic cells of the hybrid F1 (G. hirsutum×G. sturtianum) (AtDtC1). Therefore, GISH was able to discriminate parental chromosomes in the hybrid. Further, we developed a multi-color GISH to simultaneously discriminate the three genomes of the above hybrid. The results repeatedly displayed the three genomes, At, Dt, and C1, and each set of chromosomes with a unique color, making them easy to identify. The power of the multi-color GISH was proven by analysis of the hexaploid hybrid F1 (G. hirsutum × G. australe) (AtAtDtDtG2G2). We believe that the powerful multi-color GISH technique could be applied extensively to analyze the genome component in polyploidy and to identify alien chromosomes in the recipient progenies.

  4. Taxonomy Icon Data: upland cotton [Taxonomy Icon

    Lifescience Database Archive (English)

    Full Text Available Gossypium_hirsutum_S.png Gossypium_hirsutum_NS.png http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Gossypi...um+hirsutum&t=L http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Gossypium+hirsutum&t=NL http://biosciencedbc.jp/taxonomy..._icon/icon.cgi?i=Gossypium+hirsutum&t=S http://biosciencedbc.jp/taxonomy_icon/icon.cgi?i=Gossypium+hirsutum&t=NS ...

  5. Xyloglucan breakdown during cotton fiber development.

    Science.gov (United States)

    Tokumoto, Hayato; Wakabayashi, Kazuyuki; Kamisaka, Seiichiro; Hoson, Takayuki

    2003-11-01

    Cotton (Gossypium herbaceum L.) fibers elongated almost linearly up to about 20 days post anthesis. The molecular mass of xyloglucans in fiber cell walls decreased gradually during the elongation stage. When enzymatically active (native) cell wall preparations of fibers were autolyzed, the molecular mass of xyloglucans decreased. The decrease was most prominent in wall preparations obtained from the rapidly elongating fibers. The xyloglucan-degrading activity was recovered from the fiber cell walls with 3 mol/L NaCl, and the activity was high at the stages in which fibers elongated vigorously. These results suggest the possible involvement of xyloglucan metabolism in the regulation of cotton fiber elongation.

  6. GraP: platform for functional genomics analysis of Gossypium raimondii.

    Science.gov (United States)

    Zhang, Liwei; Guo, Jinyan; You, Qi; Yi, Xin; Ling, Yi; Xu, Wenying; Hua, Jinping; Su, Zhen

    2015-01-01

    Cotton (Gossypium spp.) is one of the most important natural fiber and oil crops worldwide. Improvement of fiber yield and quality under changing environments attract much attention from cotton researchers; however, a functional analysis platform integrating omics data is still missing. The success of cotton genome sequencing and large amount of available transcriptome data allows the opportunity to establish a comprehensive analysis platform for integrating these data and related information. A comprehensive database, Platform of Functional Genomics Analysis in Gossypium raimondii (GraP), was constructed to provide multi-dimensional analysis, integration and visualization tools. GraP includes updated functional annotation, gene family classifications, protein-protein interaction networks, co-expression networks and microRNA-target pairs. Moreover, gene set enrichment analysis and cis-element significance analysis tools are also provided for gene batch analysis of high-throughput data sets. Based on these effective services, GraP may offer further information for subsequent studies of functional genes and in-depth analysis of high-throughput data. GraP is publically accessible at http://structuralbiology.cau.edu.cn/GraP/, with all data available for downloading. © The Author(s) 2015. Published by Oxford University Press.

  7. Environmental effect of conventional and GM crops of cotton (Gossypium hirsutum L. and corn (Zea mays L.

    Directory of Open Access Journals (Sweden)

    Chaparro Giraldo Alejandro

    2011-12-01

    Full Text Available

    In the corn belt of Valle de San Juan and in the cotton zone of El Espinal, municipalities in the department of Tolima (Colombia, 10 conventional corn producers, 10 producers of genetically modified corn, five producers of conventional cotton and 15 producers of transgenic cotton were surveyed in the first half of 2009 to contrast the differences in the environmental impact associated with use of insecticides and herbicides, which were evaluated by estimating the environmental index quotient-EIQ. In the case of maize, an EIQ of 42 was found in the conventional type, while transgenic technology had an EIQ of 3.03. In the cultivation of cotton, an EIQ of 263.59 was found for the conventional type while for transgenic technology this value varied between 335.75 (Nuopal BG/RR and 324.79 (DP 455 BG/RR. These data showed a lower environmental impact using GM technology in the cultivation of maize when compared to the conventional counterpart, in connection with the use of insecticides and herbicides, in the context of time, space and genotypic analysis. This effect was not observed in the case of cotton, where environmental impacts were similar.

  8. Density responses and spatial distribution of cotton yield and yield components in jujube (Zizyphus jujube)/cotton (Gossypium hirsutum) agroforestry

    NARCIS (Netherlands)

    Wang, Qi; Han, Shuo; Zhang, Lizhen; Zhang, Dongsheng; Werf, van der Wopke; Evers, Jochem B.; Sun, Hongquan; Su, Zhicheng; Zhang, Siping

    2016-01-01

    Trees are the dominant species in agroforestry systems, profoundly affecting the performance of understory crops. Proximity to trees is a key factor in crop performance, but rather little information is available on the spatial distribution of yield and yield components of crop species under the

  9. Development and Validation of a Fluorescent Multiplexed Immunoassay for Measurement of Transgenic Proteins in Cotton (Gossypium hirsutum).

    Science.gov (United States)

    Yeaman, Grant R; Paul, Sudakshina; Nahirna, Iryna; Wang, Yongcheng; Deffenbaugh, Andrew E; Liu, Zi Lucy; Glenn, Kevin C

    2016-06-22

    In order to provide farmers with better and more customized alternatives to improve yields, combining multiple genetically modified (GM) traits into a single product (called stacked trait crops) is becoming prevalent. Trait protein expression levels are used to characterize new GM products and establish exposure limits, two important components of safety assessment. Developing a multiplexed immunoassay capable of measuring all trait proteins in the same sample allows for higher sample throughput and savings in both time and expense. Fluorescent (bead-based) multiplexed immunoassays (FMI) have gained wide acceptance in mammalian research and in clinical applications. In order to facilitate the measurement of stacked GM traits, we have developed and validated an FMI assay that can measure five different proteins (β-glucuronidase, neomycin phosphotransferase II, Cry1Ac, Cry2Ab2, and CP4 5-enolpyruvyl-shikimate-3-phosphate synthase) present in cotton leaf from a stacked trait product. Expression levels of the five proteins determined by FMI in cotton leaf tissues have been evaluated relative to expression levels determined by enzyme-linked immunosorbent assays (ELISAs) of the individual proteins and shown to be comparable. The FMI met characterization requirements similar to those used for ELISA. Therefore, it is reasonable to conclude that FMI results are equivalent to those determined by conventional individual ELISAs to measure GM protein expression levels in stacked trait products but with significantly higher throughput, reduced time, and more efficient use of resources.

  10. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L. and Intraspecific Single Nucleotide Polymorphism Discovery

    Directory of Open Access Journals (Sweden)

    Hamid Ashrafi

    2015-07-01

    Full Text Available Upland cotton ( L. has a narrow germplasm base, which constrains marker development and hampers intraspecific breeding. A pressing need exists for high-throughput single nucleotide polymorphism (SNP markers that can be readily applied to germplasm in breeding and breeding-related research programs. Despite progress made in developing new sequencing technologies during the past decade, the cost of sequencing remains substantial when one is dealing with numerous samples and large genomes. Several strategies have been proposed to lower the cost of sequencing for multiple genotypes of large-genome species like cotton, such as transcriptome sequencing and reduced-representation DNA sequencing. This paper reports the development of a transcriptome assembly of the inbred line Texas Marker-1 (TM-1, a genetic standard for cotton, its usefulness as a reference for RNA sequencing (RNA-seq-based SNP identification, and the availability of transcriptome sequences of four other cotton cultivars. An assembly of TM-1 was made using Roche 454 transcriptome reads combined with an assembly of all available public expressed sequence tag (EST sequences of TM-1. The TM-1 assembly consists of 72,450 contigs with a total of 70 million bp. Functional predictions of the transcripts were estimated by alignment to selected protein databases. Transcriptome sequences of the five lines, including TM-1, were obtained using an Illumina Genome Analyzer-II, and the short reads were mapped to the TM-1 assembly to discover SNPs among the five lines. We identified >14,000 unfiltered allelic SNPs, of which ∼3,700 SNPs were retained for assay development after applying several rigorous filters. This paper reports availability of the reference transcriptome assembly and shows its utility in developing intraspecific SNP markers in upland cotton.

  11. Dynamic transcriptome analysis and volatile profiling of Gossypium hirsutum in response to the cotton bollworm Helicoverpa armigera.

    Science.gov (United States)

    Huang, Xin-Zheng; Chen, Jie-Yin; Xiao, Hai-Jun; Xiao, Yu-Tao; Wu, Juan; Wu, Jun-Xiang; Zhou, Jing-Jiang; Zhang, Yong-Jun; Guo, Yu-Yuan

    2015-07-07

    In response to insect herbivory, plants emit elevated levels of volatile organic compounds for direct and indirect resistance. However, little is known about the molecular and genomic basis of defense response that insect herbivory trigger in cotton plants and how defense mechanisms are orchestrated in the context of other biological processes. Here we monitored the transcriptome changes and volatile characteristics of cotton plants in response to cotton bollworm (CBW; Helicoverpa armigera) larvae infestation. Analysis of samples revealed that 1,969 transcripts were differentially expressed (log2|Ratio| ≥ 2; q ≤ 0.05) after CBW infestation. Cluster analysis identified several distinct temporal patterns of transcriptome changes. Among CBW-induced genes, those associated with indirect defense and jasmonic acid pathway were clearly over-represented, indicating that these genes play important roles in CBW-induced defenses. The gas chromatography-mass spectrometry (GC-MS) analyses revealed that CBW infestation could induce cotton plants to release volatile compounds comprised lipoxygenase-derived green leaf volatiles and a number of terpenoid volatiles. Responding to CBW larvae infestation, cotton plants undergo drastic reprogramming of the transcriptome and the volatile profile. The present results increase our knowledge about insect herbivory-induced metabolic and biochemical processes in plants, which may help improve future studies on genes governing processes.

  12. Intragenome distribution of 5-methylcytosine in DNA of healthy and wilt-infected cotton plants (Gossypium hirsutum L.).

    Science.gov (United States)

    Guseinov, V A; Kiryanov, G I; Vanyushin, B F

    1975-03-01

    Fractionation of DNA of healthy and wilt-infected cotton plants has been carried out according to the reassociation kinetics and the content of GC and 5-methylcytosine in the resulting fractions has been studied. The genome of cotton plant was found to be methylated quite unevenly. The GC rich (GC equals 64.7 mole%) fraction of highly reiterated sequences (Cot equals 0-3.7 times 10- minus 2) has a high content of 5-methylcytosine (5.8 mole%), whereas the methylation degree of the fraction of unique sequences (Cot larger than or equal to 487) is very low (the 5-methylcytosine content is about 0.5 mole%). In plants being infected with wilt, the 5-methylcytosine content in DNA or cotton leaves decreases two-fold; no changes in the structure and molecular population of DNA has been found. The sharp change in the 5-methylcytosine content in DNA of infected plants takes place at the expense of the decrease in the 5-methylcytosine content in fractions of highly reiterated sequences. The methylation degree of unique sequences (structural genes) remains unchanged.

  13. Effects of pigment glands andgossypol on somatic cell cul-ture of upland cotton (Gos-sypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    The effects of pigment glands and gossypol on the somatic cell culture of upland cotton were studied, using the materials as follows: three pairs of glanded and glandless upland cotton near isogenic lines, TM-1, and Coker 312. The results showed that the pigment glands and gossypol contents in the explants had great inhibiting effect on the induction and growth of callus in somatic cell culture of upland cotton, and the induction rate of callus and the single callus weight of glandless cotton were much higher than those of their glanded near isogenic lines. It was easier to obtain regeneration plants from glandless cotton than from their glanded near isogenic lines. There was a significant inverse correlation between the gossypol contents in the explants and callus induction rate, with the correlation coefficient of ?0.84. The vitro gossypol in the medium had some inhibiting effect on the induction and growth of callus, especially for the glandless cotton. However, a certain concentration of vitro gossypol in the medium (0.1 mg/L) was an aid to the steadiness growth of callus in glandless cotton somatic cell culture, with a high rate of embryogenic cells which was in favor of plant regeneration, and it was also relatively easy to obtain regeneration plants when they were transferred into differentiation medium with 0.1 mg/L of vitro gossypol, even for some cultivars which are difficult in somatic cell culture. In addition, the gossypol content and its variation in the seedlings and callus during culture of Coker 312 were discussed, as well as the relationship between gossypol variation in the explants and its somatic cell culture. The probability of vitro gossypol used in cotton somatic cell culture for the improvement of somatic cell culture was suggested.

  14. A high-efficiency CRISPR/Cas9 system for targeted mutagenesis in Cotton (Gossypium hirsutum L.)

    Science.gov (United States)

    Li, Chao; Unver, Turgay; Zhang, Baohong

    2017-01-01

    The complex allotetraploid genome is one of major challenges in cotton for repressing gene expression. Developing site-specific DNA mutation is the long-term dream for cotton breeding scientists. The clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9 (CRISPR/Cas9) system is emerging as a robust biotechnology for targeted-DNA mutation. In this study, two sgRNAs, GhMYB25-like-sgRNA1 and GhMYB25-like-sgRNA2, were designed in the identical genomic regions of GhMYB25-like A and GhMYB25-like D, which were encoded by cotton A subgenome and the D subgenome, respectively, was assembled to direct Cas9-mediated allotetraploid cotton genome editing. High proportion (14.2–21.4%) CRISPR/Cas9-induced specific truncation events, either from GhMYB25-like A DNA site or from GhMYB25-like D DNA site, were detected in 50% examined transgenic cotton through PCR amplification assay and sequencing analyses. Sequencing results also demonstrated that 100% and 98.8% mutation frequency were occurred on GhMYB25-like-sgRNA1 and GhMYB25-like-sgRNA2 target site respectively. The off-target effect was evaluated by sequencing two putative off-target sites, which have 3 and 1 mismatched nucleotides with GhMYB25-like-sgRNA1 and GhMYB25-like-sgRNA2, respectively; all the examined samples were not detected any off-target-caused mutation events. Thus, these results demonstrated that CRISPR/Cas9 is qualified for generating DNA level mutations on allotetraploid cotton genome with high-efficiency and high-specificity. PMID:28256588

  15. Overexpression of the phytochrome B gene from Arabidopsis thaliana increases plant growth and yield of cotton (Gossypium hirsutum)

    Institute of Scientific and Technical Information of China (English)

    Abdul Qayyum RAO; Muhammad IRFAN; Zafar SALEEM; Idrees Ahmad NASIR; Sheikh RIAZUDDIN; Tayyab HUSNAIN

    2011-01-01

    The phytochrome B (PHYB) gene of Arabidopsis thaliana was introduced into cotton through Agrobacterium tumefaciens. Integration and expression of PHYB gene in cotton plants were confirmed by molecular evidence.Messenger RNA (mRNA) expression in one of the transgenic lines, QCC11, was much higher than those of control and other transgenic lines. Transgenic cotton plants showed more than a two-fold increase in photosynthetic rate and more than a four-fold increase in transpiration rate and stomatal conductance. The increase in photosynthetic rate led to a 46% increase in relative growth rate and an 18% increase in net assimilation rate. Data recorded up to two generations,both in the greenhouse and in the field, revealed that overexpression ofArabidopsis thaliana PHYB gene in transgeniccotton plants resulted in an increase in the production of cotton by improving the cotton plant growth, with 35% more yield. Moreover, the presence of the Arabidopsis thaliana PHYB gene caused pleiotropic effects like semi-dwarfism,decrease in apical dominance, and increase in boll size.

  16. Identification and application of biocontrol agents against Cotton leaf curl virus disease in Gossypium hirsutum under greenhouse conditions

    Directory of Open Access Journals (Sweden)

    Memoona Ramzan

    2016-05-01

    Full Text Available Biological control is a novel approach in crop protection. Bacteria, such as Bacillus spp. and Pseudomonas spp., are reported for this purpose and some of their products are already commercially available. In this study, the rhizosphere and phyllosphere of healthy cotton plants were used as a source of bacterial isolates with properties of potential biocontrol agents. The isolates were screened for phosphate solubilization activity, indole acetic acid (IAA production and antifungal activity. Two isolates, S1HL3 and S1HL4, showed phosphate solubilization and IAA production simultaneously, while another two, JS2HR4 and JS3HR2, demonstrated potential to inhibit fungal pathogens. These bacteria were identified as Pseudomonas aeruginosa (S1HL3, Burkholderia sp. (S1HL4 and Bacillus sp. (JS2HR4 and JS3HR2 based on biochemical and molecular characteristics. The isolates were tested against Cotton leaf curl virus (CLCuV in greenhouse conditions, both as individual bacterial isolates and consortia. Treated plants were healthy as compared to control plants, where up to 74% of the plants were symptomatic for CLCuV infection. Maximum inhibition of CLCuV was observed in the plants treated with a mixture of bacterial isolates: the viral load in the treated plants was only 0.4% vs. up to 74% in controls. This treatment consortium included P. aeruginosa S1HL3, Burkholderia sp. S1HL4 and Bacillus spp. isolates, JS2HR4 and JS3HR2. The principal-component biplot showed a highly significant correlation between the viral load percentage and the disease incidence.

  17. Characterization of an Organ Specific and Pathogen Responsive CC-NBS-LRR Gene from Cotton (Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    ZHANG Bao-long; NI Wan-chao; YANG Yu-wen; SHEN Xin-lian

    2008-01-01

    @@ Cotton diseases represent a major challenge to cotton growth.Cloning of a cotton pathogen response gene and promoter is of great importance to improve disease resistance.In this study,a full length CC-NBS-LRR gene (GHNBS) and its 5L flanking sequence have been cloned by race and tail PCR and further studied.

  18. Cadmium (Cd) Localization in Tissues of Cotton (Gossypium hirsutum L.), and Its Phytoremediation Potential for Cd-Contaminated Soils.

    Science.gov (United States)

    Chen, Zhifan; Zhao, Ye; Fan, Lidong; Xing, Liteng; Yang, Yujie

    2015-12-01

    Phytoremediation using economically valuable, large biomass, non-edible plants is a promising method for metal-contaminated soils. This study investigated cotton's tolerance for Cd and remediation potential through analyzing Cd bioaccumulation and localization in plant organs under different soil Cd levels. Results showed cotton presents good tolerance when soil Cd concentration ≤20.26 mg kg(-1). Cotton had good Cd accumulation ability under low soil Cd levels (soil Cd, while roots and stems were the main compartments of Cd storage. Cd complexation to other organic constituents in root and stem cell sap could be a primary detoxifying strategy. Therefore, cotton is a potential candidate for phytoremediation of Cd-contaminated soils.

  19. [Arachnofauna (araneae: Araneae) in transgenic and conventional cotton crops (Gossypium hirsutum) in the North of Santa Fe, Argentina].

    Science.gov (United States)

    Almada, Melina Soledad; Sosa, María Ana; González, Alda

    2012-06-01

    Spiders have considerable potential importance for their role as predators to some pests in agricultural systems. The composition of spiders in transgenic and conventional cotton at the Research Station of INTA Reconquista (Santa Fe) was studied during the 2005-2006 season. The experiment was a complete randomized block design with three replications and three treatments: transgenic Bt cotton (ALBt), conventional cotton without chemical control (ALCSC), and conventional cotton with chemical control (ALCCC). Weekly, spiders were collected using nets, vertical cloth and pitfall-traps. A total of 1255 specimens (16 families, and 32 species) were collected. Seven families were found in all the treatments, mainly Thomisidae (n=1 51, 84.04%) and Araneidae (n=83, 6.64%). The Hunting spiders guild ambushers (n=1053, 83.91%), "Orb weavers" (n=85, 6.77%) and "Stalkers" (n=53, 4.22%) were more abundant. There were no significant differences in the indexes diversity between treatments. Spiders were presented during the whole crop season, with peaks about flowering and boll maturity, with the highest abundance in ALBt. This work is part of the first set of data registered in Argentina about spider's community in cotton crops.

  20. Major Gene Identiifcation and Quantitative Trait Locus Mapping for Yield-Related Traits in Upland Cotton (Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    XIA Zhe; ZHANG Xin; LIU Yang-yang; JIA Zi-fang; ZHAO Hai-hong; LI Cheng-qi; WANG Qing-lian

    2014-01-01

    Segregation analysis of the mixed genetic model of major gene plus polygene was used to identify the major genesfor cotton yield-related traits using six generations P1, P2, F1, B1, B2, and F2 generated from the cross of Baimian 1×TM-1. In addition to boll size and seed index, the major genes for the other ifve traits were detected:one each for seed yield, lint percentage, boll number, lint index; and two for lint yield. Quantitative trait locus/loci (QTL) mapping was performed in the F2 and F2:3 populations of above cross through molecular marker technology, and a total of 50 QTL (26 suggestive and 24 signiifcant) for yield-related traits were detected. Four common QTL were discovered: qLP-3b(F2)/qLP-3(F2:3)andqLP-19b (F2)/qLP-19(F2:3) for lint percentage, qBN-17(F2)/qBN-17(F2:3)for boll number, and qBS-26b(F2)/qBS-26(F2:3) for boll size. Especially, qLP-3b(F2)/qLP-3(F2:3), not only had LOD scores>3 but also exceeded the permutation threshold (5.13 and 5.29, respectively), correspondingly explaining 23.47 and 29.55% of phenotypic variation. This QTL should be considered preferentially in marker assisted selection (MAS). Segregation analysis and QTL mapping could mutually complement and verify, which provides a theoretical basis for genetic improvement of cotton yield-related traits by using major genes (QTL).

  1. Quantification of Cry1Ac protein at different stages of plant growth in cotton (Gossypium hirsutum L.

    Directory of Open Access Journals (Sweden)

    Muhammad Idrees Khan

    2012-12-01

    Full Text Available The present study was conducted at Central Cotton Research Institute, Multan, Pakistan during cotton growing season 2009-10. Nine cotton cultivars with Cry 1 Ac gene (Mon 531 event selected for current experiment to characterize the toxin level of Cry1Ac protein in different Bt cotton cultivars and to record the variation in Cry1Ac protein at various plant growth stages. It was found that age of plant was having an influence on the expression of gene. Maximum level of endotoxin (0.373g/g was observed in genotype CIM-595 at 100 days of planting. While minimum value (0.166g/g was observed in genotype V-1 at 160 days of planting. Similarly different cotton genotypes showed different boll worm damage % at different growth stages. CEMB-2 was found to be most susceptible genotype showing 93.33 % boll worm damage at 160 days after planting. While V-5 proved to be most resistant showing no boll worm damage at 70 and 100 days after planting.

  2. Introduction of rol Genes into Cotton (Gossypium hirsutum L.) Genome and Effects of Transgene Expression on the Plant Development

    Institute of Scientific and Technical Information of China (English)

    LIU Hai-yan; YANG Ye-hua; WU Zheng-bin; WANG Xue-kui; YAO Ming-jin

    2004-01-01

    The rol genes cloned from Agrobacterium rhizogenes were transferred to the cotton genome via Agrobacterium-mediated transformation. Molecular analyses and developmental identification of the putative transgenic plants were carried out by means of PCR, Southern blotting and field characterization. The results showed that the expression of rol genes greatly increased the rooting ability of the transgenic plants, and changed the plant development. Highly male-sterile plants with strong apical dominance and fertile plants with short internodes, stunted growth and improved economic characteristics were segregated from the T1 transgenic lines of wild rol B gene and the rol B gene driven by 35S promoter. The transgenic lines of rol ABC construct usually had normal boll setting and slow growth. Therefore we concluded that the rol genes, modified in suitable ways,could be used to create new cotton varieties with some highly valuable characteristics.

  3. Degradation of Cry1Ac protein from Bacillus thuringiensis by soil bacteria from transgenic and conventional cotton (Gossypium hirsutum) culture.

    OpenAIRE

    João Paulo Leite Tozzi

    2009-01-01

    Bt é uma bactéria formadora da proteína Cry1Ac, tóxica a lepidópteros. Plantas geneticamente modificadas expressam essa toxina. O objetivo deste trabalho foi isolamento e identificação de bactérias do solo de algodão transgênico e convencional potencialmente biodegradadoras dessa proteína. Estudou-se a dinâmica de crescimento das bactérias em meios com a proteína Cry1Ac ou glucose, a biodegradação, os genes apr, npr e sub. Em solo de algodão convencional a contagem foi menor; para algodão tra...

  4. STUDY OF GENE FLOW FROM GM COTTON (Gossypium hirsutum VARIETIES IN “EL ESPINAL” (TOLIMA, COLOMBIA.

    Directory of Open Access Journals (Sweden)

    Alejandro Chaparro Giraldo

    2013-10-01

    Full Text Available In 2009, 4088 hectares of genetically modified (GM cotton were planted in Tolima (Colombia, however there is some uncertainty about containment measures needed to prevent the flow of pollen and seed from regulated GM fields into adjacent fields. In this study, the gene flow from GM cotton varieties to conventional or feral cotton plants via seed and pollen was evaluated. ImmunostripTM, PCR and ELISA assays were used to detect gene flow. Fifty six refuges, 27 fields with conventional cotton and four feral individuals of the enterprise “Remolinos Inc.” located in El Espinal (Tolima were analyzed in the first half of 2010. The results indicated seeds mediated gene flow in 45 refuges (80,4 % and 26 fields with conventional cotton (96 %, besides a pollen mediated gene flow in one field with conventional cotton and nine refuges. All fields cultivated with conventional cotton showed gene flow from GM cotton. Two refuges and two feral individuals did not reveal gene flow from GM cotton. 

  5. An opportunistic Pantoea sp. isolated from a cotton fleahopper that is capable of causing cotton (Gossypium hirsutum L.) bud rot

    Science.gov (United States)

    Pantoea ananatis (Serano) representatives are known to have a broad host range including both humans and plants. The cotton fleahopper (Pseudatomoscelis seriatus, Reuter) is a significant pest that causes cotton bud damage that may result in significant yield losses. In this study, cotton fleahopp...

  6. Transmission of the opportunistic cotton (Gossypium hirsutum L.) boll pathogen Pantoea agglomerans by the brown stink bug (Euschistus servus Say)

    Science.gov (United States)

    Damage to developing cotton bolls by piercing-sucking insects such as stink bugs has traditionally been attributed solely to pest feeding. Previously, we showed clear differences in severity of boll damage resulting from southern green stink bug (Nezara viridula L.) fed sterile food compared to thos...

  7. Relationship Between Piercing-Sucking Insect Control and Internal Lint and Seed Rot in Southeastern Cotton (Gossypium hirsutum L.).

    Science.gov (United States)

    Medrano, Enrique G; Bell, Alois A; Greene, Jeremy K; Roberts, Phillip M; Bacheler, Jack S; Marois, James J; Wright, David L; Esquivel, Jesus F; Nichols, Robert L; Duke, Sara

    2015-08-01

    In 1999, crop consultants scouting for stink bugs (Hemiptera spp.) in South Carolina discovered a formerly unobserved seed rot of cotton that caused yield losses ranging from 10 to 15% in certain fields. The disease has subsequently been reported in fields throughout the southeastern Cotton Belt. Externally, diseased bolls appeared undamaged; internally, green fruit contain pink to dark brown, damp, deformed lint, and necrotic seeds. In greenhouse experiments, we demonstrated transmission of the opportunistic bacterium Pantoea agglomerans by the southern green stink bug, Nezara viridula (L.). Here, green bolls were sampled from stink bug management plots (insecticide protected or nontreated) from four South Atlantic coast states (North Carolina, South Carolina, Georgia, and Florida) to determine disease incidence in the field and its association with piercing-sucking insects feeding. A logistic regression analysis of the boll damage data revealed that disease was 24 times more likely to occur (P = 0.004) in bolls collected from plots in Florida, where evidence of pest pressure was highest, than in bolls harvested in NC with the lowest detected insect pressure. Fruit from plots treated with insecticide, a treatment which reduced transmission agent numbers, were 4 times less likely to be diseased than bolls from unprotected sites (P = 0.002). Overall, punctured bolls were 125 times more likely to also have disease symptoms than nonpunctured bolls, irrespective of whether or not plots were protected with insecticides (P = 0.0001). Much of the damage to cotton bolls that is commonly attributed to stink bug feeding is likely the resulting effect of vectored pathogens. Published by Oxford University Press on behalf of Entomological Society of America 2015. This work is written by US Government employees and is in the public domain in the US.

  8. STUDY OF GENE FLOW FROM GM COTTON (Gossypium hirsutum VARIETIES IN “EL ESPINAL” (TOLIMA, COLOMBIA

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    LEIDY YANIRA RACHE CARDENAL

    2013-01-01

    Full Text Available En el 2009 se plantaron 4088 hectáreas de algodón genéticamente modificado en el departamento de Tolima (Colombia, sin embargo, hay ciertas incertidumbres acerca de las medidas de contención necesarias para impedir el movimiento de polen y semillas desde los campos GM regulados, hacia los campos adyacentes de cultivos convencionales. En este estudio se evaluó el flujo de genes mediado por polen y semillas desde variedades GM hacia variedades convencionales o individuos ferales, en el cultivo del algodón. Para detectar el flujo de genes se utilizaron ImmunostripTM, PCR y ELISA. Cincuenta y seis refugios, 27 campos con algodón convencional y cuatro individuos ferales de la empresa “Remolinos S.A.” localizada en El Espinal (Tolima fueron analizados en el primer semestre de 2010. Los resultados indicaron presencia de plantas GM en 45 refugios (80,4 % y 26 campos de algodón convencional (96 %, además de un flujo génico mediado por polen en un campo de algodón convencional y nueve refugios. En todos los campos cultivados con algodón convencional se evidenció flujo de genes desde algodón GM. Solo en dos refugios y en dos individuos ferales no se evidenció flujo de genes desde algodón GM.

  9. Effect of Implantation Machine Parameters on N+ ion Implantation for Upland Cotton(Gossypium hirsutum L.) Pollen

    Science.gov (United States)

    Yue, Jieyu; Yu, Lixiang; Wu, Yuejin; Tang, Canming

    2008-10-01

    Effect of parameters of ion implantation machine, including ion energy, total dose, dose rate, impulse energy and implantation interval on the pollen grains of upland cotton implanted with nitrogen ion beam were studied. The best parameters were screened out. The results also showed that the vacuum condition before the nitrogen ion implantation does not affect the pollen viability.

  10. Dynamics of soil diazotrophic community structure, diversity, and functioning during the cropping period of cotton (Gossypium hirsutum).

    Science.gov (United States)

    Rai, Sandhya; Singh, Dileep Kumar; Annapurna, Kannepalli

    2015-01-01

    The soil sampled at different growth stages along the cropping period of cotton were analyzed using various molecular tools: restriction fragment length polymorphism (RFLP), terminal restriction length polymorphism (T-RFLP), and cloning-sequencing. The cluster analysis of the diazotrophic community structure of early sampled soil (0, 15, and 30 days) was found to be more closely related to each other than the later sampled one. Phylogenetic and diversity analysis of sequences obtained from the first (0 Day; C0) and last soil sample (180 day; C180) confirmed the data. The phylogenetic analysis revealed that C0 was having more unique sequences than C180 (presence of γ-Proteobacteria exclusively in C0). A relatively higher richness of diazotrophic community sequences was observed in C0 (S(ACE) : 30.76; S(Chao1) : 20.94) than C180 (S(ACE) : 18.00; S(Chao1) : 18.00) while the evenness component of Shannon diversity index increased from C0 (0.97) to C180 (1.15). The impact of routine agricultural activities was more evident based on diazotrophic activity (measured by acetylene reduction assay) than its structure and diversity. The nitrogenase activity of C0 (1264.85 ± 35.7 ηmol of ethylene production g(-1) dry soil h(-1) ) was statistically higher when compared to all other values (p structure/diversity and N2 fixation rates. Thus, considerable functional redundancy of nifH was concluded to be existing at the experimental site.

  11. Carbon source dependent somatic embryogenesis and plant regeneration in cotton, Gossypium hirsutum L. cv. SVPR2 through suspension cultures.

    Science.gov (United States)

    Ganesan, M; Jayabalan, N

    2005-10-01

    Highly reproducible and simple protocol for cotton somatic embryogenesis is described here by using different concentrations of maltose, glucose, sucrose and fructose. Maltose (30 g/l) is the best carbon source for embryogenic callus induction and glucose (30 g/l) was suitable for induction, maturation of embryoids and plant regeneration. Creamy white embryogenic calli of hypocotyl explants were formed on medium containing MS basal salts, myo-inositol (100 mg/l), thiamine HCI (0.3 mg/l), picloram (0.3 mg/l), Kin (0.1 mg/l) and maltose (30 g/l). During embryo induction and maturation, accelerated growth was observed in liquid medium containing NH3NO4 (1 g/l), picloram (2.0 mg/l), 2 ip (0.2 mg/l), Kin (0.1 mg/l) and glucose (30 g/l). Before embryoid induction, large clumps of embryogenic tissue were formed. These tissues only produced viable embryoids. Completely matured somatic embryos were germinated successfully on the medium fortified with MS salts, myo-inositol (50 mg/l), thiamine HCl (0.2 mg/l), GA3 (0.2 mg/l), BA (1.0 mg/l) and glucose (30 g/l). Compared with earlier reports, 65% of somatic embryo germination was observed. The abnormal embryo formation was highly reduced by using glucose (30 g/l) compared to other carbon sources. The regenerated plantlets were fertile but smaller in height than the seed derived control plants.

  12. Azotobacter chroococcum as a potentially useful bacterial biofertilizer for cotton (Gossypium hirsutum): Effect in reducing N fertilization.

    Science.gov (United States)

    Romero-Perdomo, Felipe; Abril, Jorge; Camelo, Mauricio; Moreno-Galván, Andrés; Pastrana, Iván; Rojas-Tapias, Daniel; Bonilla, Ruth

    2017-08-29

    The aim of this research was to evaluate whether the application of two plant growth-promoting (rhizo)bacteria might reduce nitrogen fertilization doses in cotton. We used strains Azotobacter chroococcum AC1 and AC10 for their proven ability to promote seed germination and cotton growth. These microorganisms were characterized by their plant growth-promoting activities. Then, we conducted a glasshouse study to evaluate the plant growth promoting ability of these strains with reduced doses of urea fertilization in cotton. Results revealed that both strains are capable of fixing nitrogen, solubilizing phosphorus, synthesizing indole compounds and producing hydrolytic enzymes. After 12 weeks, the glasshouse experiment showed that cotton growth was positively influenced due to bacterial inoculation with respect to chemical fertilization. Notably, we observed that microbial inoculation further influenced plant biomass (p<0.05) than nitrogen content. Co-inoculation, interestingly, exhibited a greater beneficial effect on plant growth parameters compared to single inoculation. Moreover, similar results without significant statistical differences were observed among bacterial co-inoculation plus 50% urea and 100% fertilization. These findings suggest that co-inoculation of A. chroococcum strains allow to reduce nitrogen fertilization doses up to 50% on cotton growth. Our results showed that inoculation with AC1 and AC10 represents a viable alternative to improve cotton growth while decreasing the N fertilizer dose and allows to alleviate the environmental deterioration related to N pollution. Copyright © 2017 Asociación Argentina de Microbiología. Publicado por Elsevier España, S.L.U. All rights reserved.

  13. Transformation and evaluation of Cry1Ac+Cry2A and GTGene in Gossypium hirsutum L.

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    Agung Nugroho Puspito

    2015-11-01

    Full Text Available More than 50 countries around the globe cultivate cotton on a large scale. It is a major cash crop of Pakistan and is considered white gold because it is highly important to the economy of Pakistan. In addition to its importance, cotton cultivation faces several problems, such as insect pests, weeds, and viruses. In the past, insects have been controlled by insecticides, but this method caused a severe loss to the economy. However, conventional breeding methods have provided considerable breakthroughs in the improvement of cotton, but it also has several limitations. In comparison with conventional methods, biotechnology has the potential to create genetically modified plants that are environmentally safe and economically viable. In this study, a local cotton variety VH 289 was transformed with two Bt genes (Cry1Ac and Cry2A and a herbicide resistant gene (cp4 EPSPS using the Agrobacterium mediated transformation method. The constitutive CaMV 35S promoter was attached to the genes taken from Bacillus thuringiensis (Bt and to an herbicide resistant gene during cloning, and this promoter was used for the expression of the genes in cotton plants. This construct was used to develop the Glyphosate Tolerance Gene (GTGene for herbicide tolerance and insecticidal gene (Cry1Ac and Cry2A for insect tolerance in the cotton variety VH 289. The transgenic cotton variety performed 85% better compared with the non-transgenic variety. The study results suggest that farmers should use the transgenic cotton variety for general cultivation to improve the production of cotton.

  14. [Homologous simple sequence repeats (SSRs) analysis in tetraploid (AD1) and diploid (A₂, D₅) genomes of Gossypium].

    Science.gov (United States)

    Gaofei, Sun; Shoupu, He; Zhaoe, Pan; Xiongming, Du

    2015-02-01

    Simple sequence repeats (SSRs)are a class of repetitive DNA sequences, which are commonly used for genome analysis. Comparison of the homologous SSRs among different genomes is helpful to understand the evolutionary process in relative species. In this study, SSR scanning was performed to investigate their distribution and length variation among the genomes of G. raimondii (D₅), G. arboretum (A₂) and G. hirsutum (AD₁). The results demonstrated that the distribution of SSRs in A genome was very similar with that in D genome, while the length variation of homologous SSRs between A and AD genome was more conserved than that between D and AD genome. Compared with SSRs in AD genome, the number of SSRs with longer motif length in A genome was about five times of those with shorter motif length, while it was about three times in D genome. This implied that the length variation rates of homologous SSRs between diploid cotton and tetraploid cotton were different during the parallel evolution due to the subgenome fusion, and the motif length of most SSRs in tetraoploid genome tended to become shorter than homologous SSRs in diploid genome during the process of evolution. This study comprehensively compared the SSRs in three cotton genomes and revealed the significant difference among them, providing a foundation for further evolutionary study of Gossypium genome.

  15. Identification and expression profile of GbAGL2, a C-class gene from Gossypium barbadense

    Indian Academy of Sciences (India)

    Xiang Liu; Kaijing Zuo; Fei Zhang; Ying Li; Jieting Xu; Lida Zhang; Xiaofen Sun; Kexuan Tang

    2009-12-01

    An AGAMOUS (AG)-like gene, GbAGL2, was isolated from Gossypium barbadense and characterized. Alignment and phylogenetic analysis indicated that GbAGL2 shared high homology with AG-subfamily genes and belonged to a C-class gene family. DNA gel blot analysis showed that GbAGL2 belonged to a low-copy gene family. Reverse transcriptase-polymerase chain reaction (RT-PCR) and quantitative real-time PCR (qPCR) revealed that GbAGL2 was highly expressed in reproductive tissues including ovules and carpels, but barely expressed in vegetative tissues. In addition, GbAGL2 expression in a cotton cultivar XuZhou142 (wt) (XZ142, G. hirsutum L.) and its fibreless mutant XZ142 (fl) was examined. RNA in situ hybridization analysis indicated that GbAGL2 transcripts were preferentially restricted to outer ovule integuments, carpels and fibres. These expression patterns implied that GbAGL2 might participate in the development of the carpel and ovule. Furthermore, Arabidopsis transformation was performed and modifications occurred in flowers, and the silique length of transgenic plants also increased slightly, suggesting that the GbAGL2 gene may have a positive effect on the development of the ovary or ovule. Our findings suggest that GbAGL2 might not only specify the identity of floral organs but also play a potential key role in ovary or fibre development in cotton.

  16. Uniqueness of the Gossypium mustelinum Genome Revealed by GISH and 45S rDNA FISH

    Institute of Scientific and Technical Information of China (English)

    STELLY; David

    2008-01-01

    Gossypium mustelinum [(AD)4] is one of five tetraploid species in Gossypium.Three pairs of nucleolar organizer regions(NOR) in(AD)4 were detected by FISH with 45S rDNA as a probe,they also were observed with genomic DNA(gDNA) from Gossypium D genome species as probes.Of the

  17. Extensive and biased intergenomic nonreciprocal DNA exchanges shaped a nascent polyploid genome, Gossypium (cotton).

    Science.gov (United States)

    Guo, Hui; Wang, Xiyin; Gundlach, Heidrun; Mayer, Klaus F X; Peterson, Daniel G; Scheffler, Brian E; Chee, Peng W; Paterson, Andrew H

    2014-08-01

    Genome duplication is thought to be central to the evolution of morphological complexity, and some polyploids enjoy a variety of capabilities that transgress those of their diploid progenitors. Comparison of genomic sequences from several tetraploid (AtDt) Gossypium species and genotypes with putative diploid A- and D-genome progenitor species revealed that unidirectional DNA exchanges between homeologous chromosomes were the predominant mechanism responsible for allelic differences between the Gossypium tetraploids and their diploid progenitors. Homeologous gene conversion events (HeGCEs) gradually subsided, declining to rates similar to random mutation during radiation of the polyploid into multiple clades and species. Despite occurring in a common nucleus, preservation of HeGCE is asymmetric in the two tetraploid subgenomes. At-to-Dt conversion is far more abundant than the reciprocal, is enriched in heterochromatin, is highly correlated with GC content and transposon distribution, and may silence abundant A-genome-derived retrotransposons. Dt-to-At conversion is abundant in euchromatin and genes, frequently reversing losses of gene function. The long-standing observation that the nonspinnable-fibered D-genome contributes to the superior yield and quality of tetraploid cotton fibers may be explained by accelerated Dt to At conversion during cotton domestication and improvement, increasing dosage of alleles from the spinnable-fibered A-genome. HeGCE may provide an alternative to (rare) reciprocal DNA exchanges between chromosomes in heterochromatin, where genes have approximately five times greater abundance of Dt-to-At conversion than does adjacent intergenic DNA. Spanning exon-to-gene-sized regions, HeGCE is a natural noninvasive means of gene transfer with the precision of transformation, potentially important in genetic improvement of many crop plants.

  18. Association mapping of fiber quality traits in Gossypium arboreum accessions.

    Science.gov (United States)

    Application of association mapping to germplasm resources has a potential to revolutionize plant genetics. Information about the genome distribution of linkage disequilibrium (LD) is of fundamental importance for association mapping. In addition, genetic diversity is desirable for long-term crop imp...

  19. Molecular Cloning,Expression,and Characterization of an Adenylyl Cyclase-associated Protein from Gossypium arboreum Fuzzless Mutant

    Institute of Scientific and Technical Information of China (English)

    WANG Sheng; ZHAO Guo-hong; JIA Yin-hua; DU Xiong-ming

    2008-01-01

    @@ CAP,an adenylyl cyclase-associated protein,is predicted to be involved in cytoskeletal organization and signal transduction.Recently,we found that CAP may play an important role in fuzz-like fiber cell initiation in cotton.For the further research,we isolated two CAP homologues from wild type cotton Gossypium arboreum L.(DPL971) and its natural fuzzless mutant (DPL972).The gene consisted of an open reading frame of 1,416 nucleotides encoding a protein of 471 amino acid residues with a calculated molecular weight of 50.6 kDa.

  20. RNA Interference for Functional Genomics and Improvement of Cotton (Gossypium sp.).

    Science.gov (United States)

    Abdurakhmonov, Ibrokhim Y; Ayubov, Mirzakamol S; Ubaydullaeva, Khurshida A; Buriev, Zabardast T; Shermatov, Shukhrat E; Ruziboev, Haydarali S; Shapulatov, Umid M; Saha, Sukumar; Ulloa, Mauricio; Yu, John Z; Percy, Richard G; Devor, Eric J; Sharma, Govind C; Sripathi, Venkateswara R; Kumpatla, Siva P; van der Krol, Alexander; Kater, Hake D; Khamidov, Khakimdjan; Salikhov, Shavkat I; Jenkins, Johnie N; Abdukarimov, Abdusattor; Pepper, Alan E

    2016-01-01

    RNA interference (RNAi), is a powerful new technology in the discovery of genetic sequence functions, and has become a valuable tool for functional genomics of cotton (Gossypium sp.). The rapid adoption of RNAi has replaced previous antisense technology. RNAi has aided in the discovery of function and biological roles of many key cotton genes involved in fiber development, fertility and somatic embryogenesis, resistance to important biotic and abiotic stresses, and oil and seed quality improvements as well as the key agronomic traits including yield and maturity. Here, we have comparatively reviewed seminal research efforts in previously used antisense approaches and currently applied breakthrough RNAi studies in cotton, analyzing developed RNAi methodologies, achievements, limitations, and future needs in functional characterizations of cotton genes. We also highlighted needed efforts in the development of RNAi-based cotton cultivars, and their safety and risk assessment, small and large-scale field trials, and commercialization.

  1. RNA interference for functional genomics and improvement of cotton (Gossypium spp.

    Directory of Open Access Journals (Sweden)

    Ibrokhim Y. Abdurakhmonov

    2016-02-01

    Full Text Available RNA interference (RNAi, is a powerful new technology in the discovery of genetic sequence functions, and has become a valuable tool for functional genomics of cotton (Gossypium ssp.. The rapid adoption of RNAi has replaced previous antisense technology. RNAi has aided in the discovery of function and biological roles of many key cotton genes involved in fiber development, fertility and somatic embryogenesis, resistance to important biotic and abiotic stresses, and oil and seed quality improvements as well as the key agronomic traits including yield and maturity. Here, we have comparatively reviewed seminal research efforts in previously used antisense approaches and currently applied breakthrough RNAi studies in cotton, analyzing developed RNAi methodologies, achievements, limitations, and future needs in functional characterizations of cotton genes. We also highlighted needed efforts in the development of RNAi-based cotton cultivars, and their safety and risk assessment, small and large-scale field trials, and commercialisation.

  2. GOSSYPIUM HERBACEUM LINN: AN ETHNOPHARMACOLOGICAL REVIEW

    Directory of Open Access Journals (Sweden)

    Rahman Khaleequr

    2012-10-01

    Full Text Available Gossypium herbaceum Linn is known as cotton plant, belongs to the family Malvaceae, and occupies an imperative place in traditional systems of medicine especially in Unani and Ayurvedic medicines. The plant is widely distributed throughout western India, Africa, Middle East countries, central Asia and graded availability is found in Iran, Afghanistan, Russian and Turkistan. The qualitative phytochemical study of this plant extract indicates the presence of carbohydrates, saponins, steroids, glycosides, phenolic compounds such as tannins and flavonoids. The principle pigment of cotton seed is gossypol, a phenolic compound. The unsaponifiable fraction of Indian cottonseed oil contains sitosterol, ergostoerol, lipids, gossypol, oleic, palmitic, and linoleic acids. The herb has been used traditionally from antiquity, in the treatment of inadequate lactation, bronchial asthma, dysmenorrhea, diarrhea, dysentery, otalgia, sexual debility, general weakness, diabetes, lung and skin diseases. It chiefly possesses antifertlility, galactagogue, antispermatogenic, antidiabetic, antiviral and antibacterial activity. This work is an endeavor to explore and assemble the various pharmacological action and pharmacognostic aspects of the plant G. herbaceum reported till date.

  3. Within-plant distribution of cotton aphid (Hemiptera: Aphididae in cotton cultivars with colored fibers

    Directory of Open Access Journals (Sweden)

    Francisco S. Fernandes

    2012-09-01

    Full Text Available We describe the vertical and horizontal distribution of the cotton aphid Aphis gossypii Glover within a cotton plant in two cotton (Gossypium hirsutum Linnaeus cultivars (BRS Safira and BRS Rubí with colored fiber over the time. Measurements of aphid population dynamics and distribution in the cotton plants were recorded in intervals of seven days. The number of apterous or alate aphids and their specific locations were recorded, using as a reference point the location of nodes on the mainstem of the plant and also those on the leaves present on branches and fruit structures. The number of apterous aphids found on the cultivar BRS Safira (56,515 aphids was greater than that found on BRS Rubí (50,537 aphids. There was no significant difference between the number of alate aphids found on the cultivars BRS Safira (365 aphids/plant and BRS Rubí (477 aphids/plant. There were interactions between cotton cultivar and plant age, between plant region and plant age, and between cultivar and plant region for apterous aphids. The results of this study are of great importance in improving control strategies for A. gossypii in the naturally-colored cotton cultivars BRS Safira and BRS Rubí.Nós descrevemos a distribuição vertical e horizontal do pulgão do algodoeiro Aphis gossypii Glover dentro da planta de algodão (Gossypium hirsutum Linnaeus, em dois cultivares com fibras coloridas (BRS Safira and BRS Rubí ao longo do seu desenvolvimento. Medidas de dinâmicas de populações e distribuição de A. gossypii nas plantas de algodão foram registradas em intervalos de sete dias. O número de afídeos ápteros ou alados e suas localizações específicas foram registrados, usando-se como ponto de referência a localização do nó no caule principal da planta e também aqueles presentes nas folhas de ramos e estruturas frutíferas. O número de afídeos ápteros encontrados na cultivar BRS Safira (56.515 afídeos foi maior do que o encontrado na BRS Rub

  4. A redescription of Trichillum hirsutum Boucomont with notes on other interesting brazilian Scarabaeinae (Coleoptera: Scarabaeidae).

    OpenAIRE

    Ratcliffe,Brett C.

    1981-01-01

    Abstract Trichillum hirsutum Boucomont (Coleoptera: Scarabeidae: Scarabaeinae) is redescribed because of errors in the original description. New distribution records are presented for Trichillum hirsutum Boucomont, Ipselissus alvarengai Pereira and Martinez (new state records); and Trichillum boucomonti Saylor and Cryptccanthon peckorum Howden (new country records for Brazil).

  5. IN-VITRO ANTIOXIDANT ACTIVITY OF GOSSYPIUM HERBACEUM LINN.

    Directory of Open Access Journals (Sweden)

    Sharma Pravesh Kumar

    2011-07-01

    Full Text Available The present study investigated In-vitro antioxidant activity of hydroalcoholic leaves extract (70: 30 of Gossypium herbaceum Linn. to provide scientific basis for traditional usage of this plant. The In-vitro antioxidant activity was evaluated by determining reducing power, total flavonoids and total phenolic contents using standard assay methods. The ability of the extract to scavenge 1, 1-diphenyl-2-picrylhydrazyl (DPPH was also assessed using spectroscopic method. Ascorbic acid was used as standard antioxidant and positive control. The DPPH radical scavenging activity of the extract was increased with the increasing concentration. The IC50 values for DPPH assay of Gossypium herbaceum and ascorbic acid were found to be 44.69µg/ml and 13.80µg/ml respectively. The reducing power of the extract was found to be concentration dependent. Total flavonoid content in the extract was found to be 410 ± 0.74 mg Quercetin equivalents/g of dry material. Total phenolic content in Gossypium herbaceum was found to be 5.86 ± 0.75 mg Gallic acid equivalents/g of dry material. The results obtained from this study indicate that Gossypium herbaceum is a potential source of antioxidants and thus could prevent many radical diseases.

  6. Physiological performance and differential expression profiling of genes associated with drought tolerance in root tissue of four contrasting varieties of two Gossypium species.

    Science.gov (United States)

    Singh, Ruchi; Pandey, Neha; Kumar, Anil; Shirke, Pramod A

    2016-01-01

    Root growth in drying soil is generally limited by a combination of mechanical impedance and water stress. As the major function of root tissue is water and nutrient uptake, so it imparts an important role in plant growth and stress management. Previously, we have studied physiological performance and expression profiling of gene associated with drought tolerance in leaf tissue of four cotton varieties. Here, we have further continued our studies with the root tissue of these varieties. The Gossypium hirsutum species JKC-770 is drought-tolerant and KC-2 is drought-sensitive, while Gossypium herbaceum species JKC-717 is drought-tolerant and RAHS-187 is drought-sensitive. JKC-770 and JKC-717 the drought-tolerant varieties showed a comparatively high glutathione-S-transferase, superoxide dismutase, proline along with their gene expression, and low malondialdehyde content indicating low membrane damage and better antioxidative defense under drought condition. The expression levels of cellulose synthase, xyloglucan:xyloglucosyl transferase, and glycosyl hydrolases suggest modulation in cell wall structure and partitioning of sugars towards osmoprotectants instead of cell wall biosynthesis in tolerant varieties. Heat shock proteins and serine/threonine protein phosphotases show upregulation under drought condition, which are responsible for temperature tolerance and protein phosphorylation, respectively. These effects many metabolic processes and may be playing a key role in drought tolerance and adaptability of JKC-770 towards drought tolerance. The long-term water use efficiency (WUE) estimated in terms of carbon isotope discrimination (∆(13)C) in the root tissues showed maximum depletion in the ∆(13)C values in JKC-770 variety, while minimum in RAHS-187 under drought stress with reference to their respective control, suggesting a high WUE in JKC-770 variety.

  7. Ethyl ester purpurine-18 from Gossypium mustelinum (Malvaceae);Feoforbideo (etoxi-purpurina-18) isolado de Gossypium mustelinum (Malvaceae)

    Energy Technology Data Exchange (ETDEWEB)

    Silva, Tania Maria Sarmento; Camara, Celso Amorim, E-mail: taniasarmento@dq.ufrpe.b [Universidade Federal de Pernambuco (UFPE), Recife, PE (Brazil). Dept. de Quimica; Barbosa-Filho, Jose Maria [Universidade Federal da Paraiba (UFPB), Joao Pessoa, PB (Brazil). Lab. de Tecnologia Farmaceutica; Giulietti, Ana Maria [Universidade Estadual de Feira de Santana, BA (Brazil). Dept. de Ciencias Biologicas

    2010-07-01

    The phaeophorbide ethyl ester named Purpurine-18 and the flavonoids quercetin and kaempferol were obtained by chromatographic procedures from the chloroform fraction of aerial parts of Gossypium mustelinum. The structure of these compound was determined by NMR, IR and mass spectra data analysis. This is the first occurrence of this compound in Angiosperm. (author)

  8. Uniqueness of the Gossypium mustelinum Genome Revealed by GISH and 45S rDNA FISH

    Institute of Scientific and Technical Information of China (English)

    WU Qiong; STELLY David; SONG Guo-li; WANG Kun-bo; WANG Chun-ying; LIU Fang; LI Shao-hui; ZHANG Xiang-di; WANG Yu-hong; LIU San-hong

    2008-01-01

    @@ Gossypium mustelinum [-(AD)4"] is one of five tetraploid species in Gossypium.Three pairs of nucleolar organizer regions (NOR) in (AD)4 were detected by FISH with 45S rDNA as a probe,they also were observed with genomic DNA (gDNA) from Gossypium D genome species as probes.Of the three NORs or GISH-NORs,one was super-major and other two were minor,which was distinctly different from other tetraploid cottons.

  9. The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres

    Science.gov (United States)

    Yuan, Daojun; Tang, Zhonghui; Wang, Maojun; Gao, Wenhui; Tu, Lili; Jin, Xin; Chen, Lingling; He, Yonghui; Zhang, Lin; Zhu, Longfu; Li, Yang; Liang, Qiqi; Lin, Zhongxu; Yang, Xiyan; Liu, Nian; Jin, Shuangxia; Lei, Yang; Ding, Yuanhao; Li, Guoliang; Ruan, Xiaoan; Ruan, Yijun; Zhang, Xianlong

    2015-01-01

    Gossypium hirsutum contributes the most production of cotton fibre, but G. barbadense is valued for its better comprehensive resistance and superior fibre properties. However, the allotetraploid genome of G. barbadense has not been comprehensively analysed. Here we present a high-quality assembly of the 2.57 gigabase genome of G. barbadense, including 80,876 protein-coding genes. The double-sized genome of the A (or At) (1.50 Gb) against D (or Dt) (853 Mb) primarily resulted from the expansion of Gypsy elements, including Peabody and Retrosat2 subclades in the Del clade, and the Athila subclade in the Athila/Tat clade. Substantial gene expansion and contraction were observed and rich homoeologous gene pairs with biased expression patterns were identified, suggesting abundant gene sub-functionalization occurred by allopolyploidization. More specifically, the CesA gene family has adapted differentially temporal expression patterns, suggesting an integrated regulatory mechanism of CesA genes from At and Dt subgenomes for the primary and secondary cellulose biosynthesis of cotton fibre in a “relay race”-like fashion. We anticipate that the G. barbadense genome sequence will advance our understanding the mechanism of genome polyploidization and underpin genome-wide comparison research in this genus. PMID:26634818

  10. Evaluation of the introgressed lines and screening for elite germplasm in Gossypium

    Institute of Scientific and Technical Information of China (English)

    PANG Chaoyou; DU Xiongming; MA Zhiying

    2006-01-01

    In this research, 155 cotton introgressed lines from interspecific hybridization have been collected for the purpose of evaluating the effects of enhancement of new upland cotton germplasm by interspecific hybridization, screening for elite germplasm and improving cotton breeding. Through identification of various agricultural traits, we found that different wild cotton species had different capacities in terms of fiber quality, disease resistance, tolerance of abiotic stress, pest resistance and so on. SSR molecular marker technology has been used to detect the exotic genetic elements in interspecific hybrids, and 25 SSR specific loci that can be classified into two groups were found among 15 pairs of SSR primers. Results also showed that 8 exotic germplasm (Gossypium barbadense, G. arboreum and G. thurberi, etc) had genetic transmission toward upland cotton. A strategy of screening elite germplasm with exotic genes based on the molecular marker-assisted breeding techniques was suggested, and 18 lines with high-quality fiber and 4 lines with resistance to Fusanrium wilt and Verticillium wilt have been obtained.

  11. Gossypolone and Gossypolhemiquinone: Biological activity of terpenoids found in cotton (Gossypium)

    Science.gov (United States)

    The wild cotton plant, Gossypium thurberi grows in the Sonoran Desert in northern Mexico and southern Arizona, and is attacked by few herbivorous insects (Korban, 1999). In general, members of Gossypium produce a rich assortment of sesquiterpenoid and sesterterpenoids in the subepidermal pigment gl...

  12. Molecular Cloning, and Characterization of an Adenylyl Cyclase-Associated Protein from Gossypium arboreum L.

    Institute of Scientific and Technical Information of China (English)

    WANG Sheng; ZHAO Guo-hong; JIA Yin-hua; DU Xiong-ming

    2009-01-01

    The aim of this study was to clone CAP (adenylyl cyclase-associated protein) gene from Gossypium arboreum L. and develop a platform for expressing and purifying CAP protein, which is a base for the construction and function researches of CAP. In this work, a CAP homolog from cotton (DPL971) ovule was identified and cloned. And the cDNA sequence consisted of an open reading frame of 1416 nucleotides encoding a protein of 471 amino acid residues with a calculated molecular weight of 50.6 kDa. To gain insight on the CAP role in cotton fiber development, the cloned CAP cDNA was expressed. A significant higher yield pure protein was obtained with the chromatographic method. Further experiments showed that the purified protein can bind with the actin in vitro indicating that the recombinant cotton CAP is functional. The procedure described here produced high yield pure protein through one chromatographic step, suitable for further structure-function studies.

  13. Genome-Wide Analysis of the RNA Helicase Gene Family in Gossypium raimondii

    Directory of Open Access Journals (Sweden)

    Jie Chen

    2014-03-01

    Full Text Available The RNA helicases, which help to unwind stable RNA duplexes, and have important roles in RNA metabolism, belong to a class of motor proteins that play important roles in plant development and responses to stress. Although this family of genes has been the subject of systematic investigation in Arabidopsis, rice, and tomato, it has not yet been characterized in cotton. In this study, we identified 161 putative RNA helicase genes in the genome of the diploid cotton species Gossypium raimondii. We classified these genes into three subfamilies, based on the presence of either a DEAD-box (51 genes, DEAH-box (52 genes, or DExD/H-box (58 genes in their coding regions. Chromosome location analysis showed that the genes that encode RNA helicases are distributed across all 13 chromosomes of G. raimondii. Syntenic analysis revealed that 62 of the 161 G. raimondii helicase genes (38.5% are within the identified syntenic blocks. Sixty-six (40.99% helicase genes from G. raimondii have one or several putative orthologs in tomato. Additionally, GrDEADs have more conserved gene structures and more simple domains than GrDEAHs and GrDExD/Hs. Transcriptome sequencing data demonstrated that many of these helicases, especially GrDEADs, are highly expressed at the fiber initiation stage and in mature leaves. To our knowledge, this is the first report of a genome-wide analysis of the RNA helicase gene family in cotton.

  14. Extraction and Characterization of Cottonseed (Gossypium Oil

    Directory of Open Access Journals (Sweden)

    Efomah Andrew Ndudi

    2012-10-01

    Full Text Available This study investigated the extraction and characterization of cottonseed oil using solvent extraction method. Normal hexane was used as solvent in the extraction process. The AOAC method of Analysis was employed in the determination of the chemical, physical and proximate compositions of the oil. The chemical properties of the oil determined include the saponification value, free fatty acid, iodine value, peroxide value and acid value. The physical properties of the oil determined are viscosity, specific gravity, refractive index, color, odor, taste and pH. The values obtained are Saponification value (189mgKOH/g, free fatty acid (5.75mgKOH/g, iodine value (94.7gI/100g, peroxide value (9.25mEq/kg and acid value (11.50mgKOH/g. The proximate compositions obtained are Carbohydrate (57.06%, lipid/fat (13.30%, crude fiber (0.5%, ash (1.5%, moisture content (7.21%, and crude protein (15.40%. The oil yield was 15.05%. From the results obtained it can be seen that cottonseed oil has great potential for use as domestic and industrial oil.

  15. Potassium sources in covering fertilization on cotton I – Yield, fiber quality and economic analisys. / Fontes de potássio na adubação de cobertura do algodoeiro I – Produtividade, qualidade de fibras e análise econômica

    Directory of Open Access Journals (Sweden)

    José Eduardo Creste

    2009-03-01

    Full Text Available A field experiment was conducted in Sapezal, Mato Grosso state, Brazil, in 2007/2008, with the purpose of determining the effect of potassium sources on yield components, yield, fiber quality and economical aspects of cotton (Gossypium hirsutum L.. A randomized complete block experimental design was used, with five replications. The treatments consisted of application in covering, via soil, at rate of 100 kg ha-1 of K2O, in two split applications, of the sources KCl, K2SO4, KNO3 and K2SO4.2MgSO4. The number of nodes, height, number of bolls in the superior third and the weight of boll in the medium third was higher with K2SO4.2MgSO4 than with KNO3 source. The potassium fertilizers did not influence the fiber revenue, but the fertilizing with K2SO4.2MgSO4 source had higher cotton seed yield and lint yield, although the uniformity ratio of fibber and profitability were smaller in relation to K2SO4. The fibber agio index was higher with KNO3 source. The production cost was higher with K2SO4.2MgSO4 source and in function of the smallest production cost, KCl source presented superior liquid revenue than other treatments. Conduziu-se um experimento de campo, em Sapezal – MT, no ano agrícola de 2007/2008, com o objetivo de avaliar o efeito das fontes de potássio sobre os componentes de produção, a produtividade, a qualidade da fibra e os aspectos econômicos do algodoeiro (Gossypium hirsutum L. cultivar FMT 701. O delineamento utilizado foi o de blocos casualizados, com cinco repetições. Os tratamentos constaram da aplicação em cobertura via solo na dose de 100 kg ha-1 de K2O, parcelada em duas aplicações, nas fontes KCl, K2SO4, KNO3 e K2SO4.2MgSO4. O número de nós, a altura da planta, o número de capulhos no terço superior e o peso do capulho no terço médio foram maiores no tratamento com K2SO4.2MgSO4, em relação ao KNO3. Os adubos potássicos não influenciaram o rendimento de fibra, mas a adubação potássica de cobertura na

  16. Genetics of Hybrid Incompatibility Between Lycopersicon esculentum and L. hirsutum

    Science.gov (United States)

    Moyle, Leonie C.; Graham, Elaine B.

    2005-01-01

    We examined the genetics of hybrid incompatibility between two closely related diploid hermaphroditic plant species. Using a set of near-isogenic lines (NILs) representing 85% of the genome of the wild species Lycopersicon hirsutum (Solanum habrochaites) in the genetic background of the cultivated tomato L. esculentum (S. lycopersicum), we found that hybrid pollen and seed infertility are each based on 5–11 QTL that individually reduce hybrid fitness by 36–90%. Seed infertility QTL act additively or recessively, consistent with findings in other systems where incompatibility loci have largely been recessive. Genetic lengths of introgressed chromosomal segments explain little of the variation for hybrid incompatibility among NILs, arguing against an infinitesimal model of hybrid incompatibility and reinforcing our inference of a limited number of discrete incompatibility factors between these species. In addition, male (pollen) and other (seed) incompatibility factors are roughly comparable in number. The latter two findings contrast strongly with data from Drosophila where hybrid incompatibility can be highly polygenic and complex, and male sterility evolves substantially faster than female sterility or hybrid inviability. The observed differences between Lycopersicon and Drosophila might be due to differences in sex determination system, reproductive and mating biology, and/or the prevalence of sexual interactions such as sexual selection. PMID:15466436

  17. Cloning and expression of two sterol C-24 methyltransferase genes from upland cotton (Gossypium hirsuturm L.)

    Institute of Scientific and Technical Information of China (English)

    Ming Luo; Kunling Tan; Zhongyi Xiao; Mingyu Hu; Peng Liao; Kuijun Chen

    2008-01-01

    Brassinosteroids (BRs) are an important class of plant steroidal hormones that are essential in a wide variety of physiological processes. Two kinds of intermediates, sitosterol and campesterol, play a crucial role in cell elongation, cellulose biosynthesis, and accumulation. To illuminate the effects of sitosterol and campesterol on the development of cotton (Gossypium hirsuturm L.) fibers through screening cotton fiber EST database and contigging the candidate ESTs, two key genes GhSMT2-1 and GhSMT2-2 controlling the sitosterol biosynthesis were cloned from developing fibers of upland cotton cv. Xuzhou 142. The full length of GhSMT2-1 was 1, 151bp, including an 8bp 5'-untranslated region (UTR), a 1, 086bp open reading frame (ORF), and a 57bp 3'-UTR. GhSMT2-1 gene encoded a polypeptide of 361 amino acid residues with a predicted molecular mass of 40kDa. The full length of GhSMT2-2 was 1, 166bp, including an 18bp 5'-UTR, a 1, 086bp ORF, and a 62bp 3'-UTR. GhSMT2-2 gene encoded a polypeptide of 361 amino acid residues with a predicted molecular mass of 40kDa. The two deduced amino acid sequences had high homology with the SMT2 from Arabidopsis thaliana and Nicotiana tabacum. Furthermore, the typical conserved structures characterized by the sterol C-24 methyltransferase, such as region I (LDVGCGVGGPIVIRAI), region Ⅱ (IEATCHAP), and region Ⅲ (YEWGWGQSFHF), were present in both deduced proteins. Southern blotting analysis indicated that GhSMT2-1 or GhSMT2-2 was a single copy in upland cotton genome. Quantitative real-time RT-PCR analysis revealed that the highest expression levels of both genes were detected in 10 DPA (day post anthesis) fibers, while the lowest levels were observed in cotyledon and leaves. The expression level of GhSMT2-1 was 10 times higher than that of GhSMT2-2 in all the organs and tissues detected. These results indicate that the homologue of sterol C-24 methyltransferase gene was cloned from upland cotton and both GhSMT2 genes play a crucial

  18. Araneofauna (Arachnida: Araneae en cultivos de algodón (Gossypium hirsutum transgénicos y convencionales en el norte de Santa Fe, Argentina

    Directory of Open Access Journals (Sweden)

    Melina Soledad Almada

    2012-06-01

    Full Text Available Las arañas tienen un valor potencial considerable por su rol depredador de insectos, estas son plagas de la agricultura. Durante la campaña agrícola 2005/06, en INTA Reconquista, Santa Fe (Argentina se estudio la composición de arañas presentes en cultivos de algodón transgénico y convencional, mediante un diseño experimental de bloques completos al azar, con tres repeticiones y tres tratamientos: algodón transgénico Bt (ALBt, algodón convencional sin control químico (ALCSC y con control químico (ALCCC. Semanalmente, se capturaron arañas, con una red entomológica de arrastre, paño vertical de 1m y trampas de caída. Asimismo se recolectaron 1 255 ejemplares (16 familias y 32 especies. Siete familias se presentaron en los tres tratamientos, donde predomino Thomisidae (n=1 051, 84.04% y Araneidae (n=83, 6.64%. El gremio cazadoras por emboscada (n=1 053, 83.91%, “Tejedoras de telas orbiculares” (n=85, 6.77% y “Cazadoras al acecho” (n=53, 4.22% fueron las más abundantes. No hubo diferencias significativas en los índices de diversidad entre tratamientos. Las arañas se presentaron durante todo el ciclo del cultivo, con picos en las semanas de floración y madurez de las capsulas, además la mayor abundancia la encontramos en el ALBt. Este trabajo constituye el primer registro sobre la comunidad de arañas en cultivos de algodón para Argentina.Arachnofauna (Araneae: Araneae in transgenic and conventional cotton crops (Gossypiumhirsutum in the North of Santa Fe, Argentina. Spiders have considerable potential importance for their role as predators to some pests in agricultural systems. The composition of spiders in transgenic and conventional cotton at the Research Station of INTA Reconquista (Santa Fe was studied during the 2005-2006 season. The experiment was a complete randomized block design with three replications and three treatments: transgenic Bt cotton (ALBt, conventional cotton without chemical control (ALCSC, and conventional cotton with chemical control (ALCCC. Weekly, spiders were collected using nets, vertical cloth and pitfall-traps. A total of 1 255 specimens (16 families, and 32 species were collected. Seven families were found in all the treatments, mainly Thomisidae (n=1 051, 84.04% and Araneidae (n=83, 6.64%. The Hunting spiders guild ambushers (n=1 053, 83.91%, “Orb weavers” (n=85, 6.77% and “Stalkers” (n=53, 4.22% were more abundant. There were no significant differences in the indexes diversity between treatments. Spiders were presented during the whole crop season, with peaks about flowering and boll maturity, with the highest abundance in ALBt. This work is part of the first set of data registered in Argentina about spider’s community in cotton crops. Rev. Biol. Trop. 60 (2: 611-623. Epub 2012 June 01.

  19. Cottonseed protein, oil, and mineral status in near-isogenic cotton (Gossypium hirsutum) lines expressing fuzzy/linted and fuzzless/linted seed phenotypes

    Science.gov (United States)

    Cotton is an important crop in the world and is a major source of oil for human consumption and cotton meal for livestock. Cottonseed composition constituents (protein, oil, and minerals) determine the quality of seeds. Therefore, maintaining optimum levels of cottonseed constituents is critical. Ph...

  20. In Vitro Mutagenesis - Alternate Approach to Breeding of Gossypium hirsutum L.%离体诱变一种附加的陆地棉育种方法

    Institute of Scientific and Technical Information of China (English)

    A. MUTHUSAMY; N. JAYABALAN

    2002-01-01

    @@ Mutations are possibly the only source of creating heritable variability in all biological system and, many useful mutants in plants have been released for commercial cultivation across the world. To-date throughout the world about 2252 mutants have been officially registered in the FAO/IAEA mutant varieties data base (MVD) of plant breeding and genetics sections.According to Maluszynski et al.

  1. Determinação do poder germinativo de sementes de variedades paulistas de algodoeiro (Gossypium hirsutum L. Studies on germination of cotton seeds

    Directory of Open Access Journals (Sweden)

    Eduardo Zink

    1969-01-01

    Full Text Available São relatados os resultados das determinações do poder germinativo de sementes de sete variedades paulistas de algodoeiro, provenientes de ensaios de competição de variedades instalados nos Estados de São Paulo e Paraná, no ano agrícola de 1966/67. Os testes de germinação foram efetuados simultaneamente no Laboratório de Sementes, do Instituto Agronômico do Estado de São Paulo, e no Laboratório Central, da Divisão de Sementes e Mudas, da Secretaria da Agricultura do Estado de São Paulo. Com referência a plântulas normais e plântulas anormais B (infetadas verificaram-se, conforme o caso, diferenças significativas entre localidades, entre variedades, entre laboratórios e entre substratos, bem como diversas interações envolvendo as variáveis mencionadas.Seeds of seven varieties of cotton produced at different regions of the States of São Paulo and Paraná (Brazil were submitted to germination tests at two laboratories: Instituto Agronômico de Campinas (IAC at 20 - 30°C and Divisão de Sementes e Mudas (DSM at 30°C. The substrata used for the tests were cotton towels desinfected differently at each laboratory. The statistical analysis for numbers of normal and abnormal plants (infected showed significant differences between regions, varieties, laboratories and substrata. Several significant interactions including these variables were also detected.

  2. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).

    Science.gov (United States)

    Andres, Ryan J; Coneva, Viktoriya; Frank, Margaret H; Tuttle, John R; Samayoa, Luis Fernando; Han, Sang-Won; Kaur, Baljinder; Zhu, Linglong; Fang, Hui; Bowman, Daryl T; Rojas-Pierce, Marcela; Haigler, Candace H; Jones, Don C; Holland, James B; Chitwood, Daniel H; Kuraparthy, Vasu

    2017-01-03

    Leaf shape varies spectacularly among plants. Leaves are the primary source of photoassimilate in crop plants, and understanding the genetic basis of variation in leaf morphology is critical to improving agricultural productivity. Leaf shape played a unique role in cotton improvement, as breeders have selected for entire and lobed leaf morphs resulting from a single locus, okra (l-D1), which is responsible for the major leaf shapes in cotton. The l-D1 locus is not only of agricultural importance in cotton, but through pioneering chimeric and morphometric studies, it has contributed to fundamental knowledge about leaf development. Here we show that an HD-Zip transcription factor homologous to the LATE MERISTEM IDENTITY1 (LMI1) gene of Arabidopsis is the causal gene underlying the l-D1 locus. The classical okra leaf shape allele has a 133-bp tandem duplication in the promoter, correlated with elevated expression, whereas an 8-bp deletion in the third exon of the presumed wild-type normal allele causes a frame-shifted and truncated coding sequence. Our results indicate that subokra is the ancestral leaf shape of tetraploid cotton that gave rise to the okra allele and that normal is a derived mutant allele that came to predominate and define the leaf shape of cultivated cotton. Virus-induced gene silencing (VIGS) of the LMI1-like gene in an okra variety was sufficient to induce normal leaf formation. The developmental changes in leaves conferred by this gene are associated with a photosynthetic transcriptomic signature, substantiating its use by breeders to produce a superior cotton ideotype.

  3. 棉花遗传作图用SSR标记的开发%Development of SSR Markers towards Genetic Mapping in Cotton (GossyPium hirsutum L. )

    Institute of Scientific and Technical Information of China (English)

    Siva P. KUMPATLA; Erin C. HORNE; Manali R. SHAH; Manju GUPTA; Steven A. THOMPSON

    2002-01-01

    @@ Availability of informative molecular markers is a prerequisite for genetic mapping and marker assisted selection projects. Micro-satellites or Simple Sequence Repeat (SSR) markers are PCR-based and currently the most widely used marker system in the plant molecular genetics community due to their high degree of polymorphism, random distribution throughout the genome and their suitability for high throughput genotyping formats.

  4. Predawn respiration rates during flowering are highly predictive of yield response in Gossypium hirsutum when yield variability is water-induced

    Science.gov (United States)

    Respiratory carbon evolution by leaves under abiotic stress is implicated as a major limitation to crop productivity; however, respiration rates of fully expanded leaves are positively associated with plant growth rates. Given the substantial sensitivity of plant growth to drought, it was hypothesiz...

  5. Hydrological responses of land use change from cotton (Gossypium hirsutum L.) to cellulosic bioenergy crops in the Southern High Plains of Texas, USA

    National Research Council Canada - National Science Library

    Chen, Yong; Ale, Srinivasulu; Rajan, Nithya; Morgan, Cristine L. S; Park, Jongyoon

    2016-01-01

    The Southern High Plains ( SHP ) region of Texas in the United States, where cotton is grown in a vast acreage, has the potential to grow cellulosic bioenergy crops such as perennial grasses and biomass sorghum ( Sorghum bicolor...

  6. High residue cover crops alone or with strategic tillage to manage glyphosate-resistant palmer amaranth (amaranthus palmeri) in Southeastern cotton (gossypium hirsutum)

    Science.gov (United States)

    Glyphosate-resistant (GR) Palmer amaranth (Amaranthus palmeri S. Wats) is redefining row crop weed management in the Southeast due to its widespread distribution, high competitive ability, copious seed production, and resilience to standard weed management programs. Herbicides alone are failing to p...

  7. Chilling stress--the key predisposing factor for causing Alternaria alternata infection and leading to cotton (Gossypium hirsutum L. leaf senescence.

    Directory of Open Access Journals (Sweden)

    Jingqing Zhao

    Full Text Available Leaf senescence plays a vital role in nutrient recycling and overall capacity to assimilate carbon dioxide. Cotton premature leaf senescence, often accompanied with unexpected short-term low temperature, has been occurring with an increasing frequency in many cotton-growing areas and causes serious reduction in yield and quality of cotton. The key factors for causing and promoting cotton premature leaf senescence are still unclear. In this case, the relationship between the pre-chilling stress and Alternaria alternata infection for causing cotton leaf senescence was investigated under precisely controlled laboratory conditions with four to five leaves stage cotton plants. The results showed short-term chilling stress could cause a certain degree of physiological impairment to cotton leaves, which could be recovered to normal levels in 2-4 days when the chilling stresses were removed. When these chilling stress injured leaves were further inoculated with A. alternata, the pronounced appearance and development of leaf spot disease, and eventually the pronounced symptoms of leaf senescence, occurred on these cotton leaves. The onset of cotton leaf senescence at this condition was also reflected in various physiological indexes such as irreversible increase in malondialdehyde (MDA content and electrolyte leakage, irreversible decrease in soluble protein content and chlorophyll content, and irreversible damage in leaves' photosynthesis ability. The presented results demonstrated that chilling stress acted as the key predisposing factor for causing A. alternata infection and leading to cotton leaf senescence. It could be expected that the understanding of the key factors causing and promoting cotton leaf senescence would be helpful for taking appropriate management steps to prevent cotton premature leaf senescence.

  8. Quantification of the effects of management factors on maize(Zea mays L. ) and cotton (Gossypium hirsutum L. ) residues decomposition rate

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Efforts to quantify management effects on decomposition rate of added substrates to the soil is important especially where such information is to be used for prediction in mathematical or simulation models. Using data from a short-term (60 days) greenhouse simulation study, a procedure for quantdying effects of management on SOM and substrate decomposition is presented. Using microbial growth rate u ( q ),microbial efficiency in substrate utilization e (q), specific decomposition rates for added plant residues to two contrasting soils, red earth (Ferrasol) and black earth (Acrisol) were estimated. The treatments included straw addition + buried, (T1); straw addition + mineral N (T2); and straw addition + tillage, (T3). Sampling was done every 15 days. Straw decomposition rate was affected by external mineral N sources (Urea 46% N). Addition of an external N source significantly increased decomposition rates. The study could not, however, fully account for the effect of tillage on residues because of the limited effect of the tillage method due to the artificial barrier to mechanical interference supplied by the mesh bags. It is concluded that using few decomposer parameters, decomposition rates and consequently SOM trends in a soil system can be monitored and quantification of the influence of perturbations on decomposition rate of added substrates possible.

  9. Maize (Zea mays L.) and Cotton (Gossypium hirsutum L.) Straw Decomposition in Soil: Effect of Straw Placement, Mineral Nitrogen and Tillage

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    With the present understanding that decomposing straw may not only affect soil properties, but pos-sibly greenhouse gas emissions as well, focus among environmental researchers has gradually expanded toinclude understanding of decomposition rate and stability of straw of different plants in different soils underdifferent management conditions. Against such a background, a short-term (60 days) greenhouse simulationexperiment was carried out to study the effects of straw placement, external mineral N source and tillageon straw decomposition of maize and cotton in two contrasting soils, a red soil (Ferrasol) and a black soil(Acrisol). The treatments included straw addition only (T1); straw addition + mineral N (T2); and strawaddition + tillage (T3). Straw was either buried in the soil or placed on the surface. Sampling was doneevery 15 days. Placement, addition of external mineral N sources (urea, 46% N), straw type, soil type andexposure duration (15, 30, 45 and 60 days) affected straw decomposition. Decomposition was more in buriedstraw than in surface-placed straw at all sampling dates in red soil. The addition of an external N sourcesignificantly increased decomposition. The study could not, however, fully account for the effect of tillageon straw decomposition because of the limited effect of our tillage method due to the artificial barrier tomechanical interference supplied by the mesh bags.

  10. High Expression of Cry1Ac Protein in Cotton (Gossypium hirsutum by Combining Independent Transgenic Events that Target the Protein to Cytoplasm and Plastids.

    Directory of Open Access Journals (Sweden)

    Amarjeet Kumar Singh

    Full Text Available Transgenic cotton was developed using two constructs containing a truncated and codon-modified cry1Ac gene (1,848 bp, which was originally characterized from Bacillus thuringiensis subspecies kurstaki strain HD73 that encodes a toxin highly effective against many lepidopteran pests. In Construct I, the cry1Ac gene was cloned under FMVde, a strong constitutively expressing promoter, to express the encoded protein in the cytoplasm. In Construct II, the encoded protein was directed to the plastids using a transit peptide taken from the cotton rbcSIb gene. Genetic transformation experiments with Construct I resulted in a single copy insertion event in which the Cry1Ac protein expression level was 2-2.5 times greater than in the Bacillus thuringiensis cotton event Mon 531, which is currently used in varieties and hybrids grown extensively in India and elsewhere. Another high expression event was selected from transgenics developed with Construct II. The Cry protein expression resulting from this event was observed only in the green plant parts. No transgenic protein expression was observed in the non-green parts, including roots, seeds and non-green floral tissues. Thus, leucoplasts may lack the mechanism to allow entry of a protein tagged with the transit peptide from a protein that is only synthesized in tissues containing mature plastids. Combining the two events through sexual crossing led to near additive levels of the toxin at 4-5 times the level currently used in the field. The two high expression events and their combination will allow for effective resistance management against lepidopteran insect pests, particularly Helicoverpa armigera, using a high dosage strategy.

  11. Combining Ability and Heterosis Between High Strength Lines and Transgenic Bt (Bacillus thuringiensis) Bollworm-Resistant Lines in Upland Cotton (Gossypium hirsutum L.)

    Institute of Scientific and Technical Information of China (English)

    ZHANG Zheng-sheng; LI Xian-bi; XIAO Yue-hua; LUO Ming; LIU Da-jun; HUANG Shun-li; ZHANG Feng-xin

    2003-01-01

    To analyse the combining ability and heterosis between high-strength lines and transgenic Btbollworm-resistant lines in upland cotton, 5 high-strength lines were crossed as female lines with 12 transgenicBt bollworm-resistant lines according to NCII design. It was demonstrated that the compositions of variance invarious traits were quite different. For seed cotton yield, lint yield, boll numbers per plant and boll weight,the dominant (special combining ability) effects were the major effects, accounting for 87.38, 84.40, 80.04and 64.46 % of the total phenotypic variances, respectively, while for fibre strength and micronaire value, theadditive (general combining ability) effects had the major effects, with a ratio of additive variance to pheno-typic variance of 78.85 and 43.80 %. As for lint percent and 2. 5 % span length, the dominant and additivevariances had similar effects, in phenotypic variances (54.94 and 40. 11% for lint percent, 45.76and42.49% for 2.5% span length, respectively). The mid-parent heterosis (Hpm), surpassing parent heterosis(Hpb) and competitive heterosis (Hck) for seed cotton yield and lint yield were both extremely significant.For fibre properties, the Hck and Hpm of 2.5 % fibre span length were extremely significant, the Hck of fibrestrength was significant, and the favorable negative Hck of micronaire was also extremely significant. The in-crements of hybrid over common variety were 17 % for lint yield and fibre strength, 7 % for fibre span length,and 4% for fineness.

  12. Effect of Methyl Jasmonate on Phytoalexins Biosynthesis and Induced Disease Resistance to Fusarium oxysporum f. sp. Vasinfectum in Cotton (Gossypium hirsutum L.

    Directory of Open Access Journals (Sweden)

    Yao Kouakou François Konan

    2014-01-01

    Full Text Available The effect of methyl jasmonate (MeJA sprayed on cotton healthy leaves was evaluated in terms of inherent bioactive chemicals induction. The total phenolic content significantly increased after MeJA 5.0 mM treatments compared to the other tested concentrations (0; 2.5; 10; 15; 20 mM. Among the eleven phenolic compounds which were found except for ferulic acid, gossypetin, gossypol, 3-p-coumaroylquinic acid, and piceatannol were identified as major phenolic constituents of cotton. Their content also significantly increased after the MeJA treatment. In addition, gossypol increased 64 times compared to the control, in the 5.0 mM MeJA treatment. Furthermore, cichoric acid, chlorogenic acid, and pterostilbene are synthesized de novo in leaves of MeJA-treated plant. Treatment of cotton leaves with MeJA 5.0 mM followed 72 h of incubation hampered the expression of Fusarium wilt caused by Fusarium oxysporium f. sp. vasinfectum (FOV. MeJA efficiency was concentration and incubation time dependent. Disease severity on MeJA-treated leaves was significantly lower as compared to the control. Therefore, the high content of gossypetin, gossypol, 3-p-coumaroylquinic acid, ferulic acid, and piceatannol and the presence of cichoric acid, chlorogenic acid, and pterostilbene in plants treated with MeJA, contrary to the control, are essential to equip the cotton compounds with defences or phytoalexins against FOV.

  13. Constructing Molecular Marker Linkage Maps of Chromosome 14Sh and 22Sh and QTL Mapping for Major Traits by Use of Substitution Lines of Gossypium hirsutum L.

    Institute of Scientific and Technical Information of China (English)

    GUO Xiang-mo; LUAN Ming-bao; SAHA Sukumar; JENKINS Johnie N

    2008-01-01

    @@ CSB14Sh,which is isogenic for its recurrent parent TM-1 except for chromosome 14 short arm,was crossed with TM-1,and the F2 population was produced.A total of 3800 SSR primer pairs covering the whole genome were used to screen polymorphism among two parents,TM-1 and CSB14Sh,and their F1 progeny,which resulted in 15 polymorphic primer pairs.The 15 polymorphic primer pairs amplified 23 marker loci.

  14. Modifications to a LATE MERISTEM IDENTITY-1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.)

    Science.gov (United States)

    Leaf shape varies spectacularly among plants. Leaves are the primary source of photo-assimilate in crop plants and understanding the genetic basis of variation in leaf morphology is critical to improving agricultural productivity. Leaf shape played a unique role in cotton improvement, as breeders ha...

  15. Analyzing blends of herbivore-induced volatile organic compounds with factor analysis: revisiting "cotton plant, Gossypium hirsutum L., defense in response to nitrogen fertilization".

    Science.gov (United States)

    Chen, Yigen

    2013-04-01

    Many herbivorous, predaceous, and parasitic insects use constitutive and herbivore-induced volatile organic compounds (VOCs) to locate their respective host plant, prey, and hosts. Multivariate statistical tools (e.g., factor analysis) are recognized increasingly as an appropriate approach for analyzing intercorrelated data such as presence/absence or quantities of VOCs. One challenge of implementing factor analysis is determining how many new variables (factors) to retain in the final analysis. I demonstrate a method proposed by Johnson and Wichern to mitigate this problem by using VOC data published in Chen et al. The advantage of using loading (or weight) transformation in interpretation of new variables was also illustrated in the example. Factor analysis found similar nitrogen fertilization effects on VOC production as those in Chen et al. Similarities were 1) nitrogen fertilization interacted with herbivore damage status on VOC production: at low nitrogen (42 ppm) level, beet armyworm, Spodoptera exigua (Hübner) (Lepidoptera: Noctuidae), damage elicited increases in VOC production, whereas at high nitrogen (196 ppm) VOC production was suppressed; 2) nitrogen fertilization did not affect limonene, alpha-pinene, and beta-pinene production. The seven individual VOCs significantly affected by nitrogen fertilization in Chen et al. were (Z)-3-hexenal, (E)-2-hexenal, (E)-beta-farnesene, (E)-4,8-dimethyl-1,3,7-nonatriene (DMNT), alpha-bergamotene, gamma-bisabolene, and bisabolol, of which only three ((E)-beta-farnesene, gamma-bisabolene, and bisabolol) weighed heavily on factor 1 in the current study.

  16. Expression of baculovirus anti-apoptotic genes p35 and op-iap in cotton (Gossypium hirsutum L. enhances tolerance to verticillium wilt.

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    Juan Tian

    Full Text Available BACKGROUND: Programmed cell death plays an important role in mediating plant adaptive responses to the environment such as the invasion of pathogens. Verticillium wilt, caused by the necrotrophic pathogen Verticillium dahliae, is a serious vascular disease responsible for great economic losses to cotton, but the molecular mechanisms of verticillium disease and effective, safe methods of resistance to verticillium wilt remain unexplored. METHODOLOGY/PRINCIPAL FINDINGS: In this study, we introduced baculovirus apoptosis inhibitor genes p35 and op-iap into the genome of cotton via Agrobacterium-mediated transformation and analyzed the response of transgenic plants to verticillium wilt. Results showed that p35 and op-iap constructs were stably integrated into the cotton genome, expressed in the transgenic lines, and inherited through the T(3 generation. The transgenic lines had significantly increased tolerance to verticillium wilt throughout the developmental stages. The disease index of T(1-T(3 generation was lower than 19, significantly (P<0.05 better than the negative control line z99668. After treatment with 250 mg/L VD-toxins for 36 hours, DNA from negative control leaves was fragmented, whereas fragmentation in the transgenic leaf DNA did not occur. The percentage of cell death in transgenic lines increased by 7.11% after 60 mg/L VD-toxin treatment, which was less than that of the negative control lines's 21.27%. This indicates that p35 and op-iap gene expression partially protects cells from VD-toxin induced programmed cell death (PCD. CONCLUSION/SIGNIFICANCE: Verticillium dahliae can trigger plant cells to die through induction of a PCD mechanism involved in pathogenesis. This paper provides a potential strategy for engineering broad-spectrum necrotrophic disease resistance in plants.

  17. The Complexity of Posttranscriptional Small RNA Regulatory Networks Revealed by In Silico Analysis of Gossypium arboreum L. Leaf, Flower and Boll Small Regulatory RNAs.

    Directory of Open Access Journals (Sweden)

    Hongtao Hu

    Full Text Available MicroRNAs (miRNAs and secondary small interfering RNAs (principally phased siRNAs or trans-acting siRNAs are two distinct subfamilies of small RNAs (sRNAs that are emerging as key regulators of posttranscriptional gene expression in plants. Both miRNAs and secondary-siRNAs (sec-siRNAs are processed from longer RNA precursors by DICER-LIKE proteins (DCLs. Gossypium arboreum L., also known as tree cotton or Asian cotton, is a diploid, possibly ancestral relative of tetraploid Gossypium hirsutum L., the predominant type of commercially grown cotton worldwide known as upland cotton. To understand the biological significance of these gene regulators in G. arboreum, a bioinformatics analysis was performed on G. arboreum small RNAs produced from G. arboreum leaf, flower, and boll tissues. Consequently, 263 miRNAs derived from 353 precursors, including 155 conserved miRNAs (cs-miRNAs and 108 novel lineage-specific miRNAs (ls-miRNAs. Along with miRNAs, 2,033 miRNA variants (isomiRNAs were identified as well. Those isomiRNAs with variation at the 3'-miRNA end were expressed at the highest levels, compared to other types of variants. In addition, 755 pha-siRNAs derived 319 pha-siRNA gene transcripts (PGTs were identified, and the potential pha-siRNA initiators were predicted. Also, 2,251 non-phased siRNAs were found as well, of which 1,088 appeared to be produced by so-called cis- or trans-cleavage of the PGTs observed at positions differing from pha-siRNAs. Of those sRNAs, 148 miRNAs/isomiRNAs and 274 phased/non-phased siRNAs were differentially expressed in one or more pairs of tissues examined. Target analysis revealed that target genes for both miRNAs and pha-siRNAs are involved a broad range of metabolic and enzymatic activities. We demonstrate that secondary siRNA production could result from initial cleavage of precursors by both miRNAs or isomiRNAs, and that subsequently produced phased and unphased siRNAs could result that also serve as triggers

  18. Genetic Analysis of a Novel Dwarf Mutant,AISHENG98,from Upland Cotton

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Cotton(Gossypium hirsutum L.) is the most important textile fiber and the second most important oil seed source in the world.To control excessive growth of cotton plant height,which may result in shading and lodging,farmers and researchers have used plant growth regulators that increased

  19. Response of cotton, alfalfa, and cantaloupe to foliar-deposited salt in an arid environment. [Gossypium hirsumtum L. ; Medicago sativa L. ; Cucumis melo L

    Energy Technology Data Exchange (ETDEWEB)

    Hofmann, W.C.; Karpiscak, M.M.; Bartels, P.G.

    The cooling towers at the Palo Verde Nuclear Generating Station (PVNGS), located 80 km west of Phoenix, AZ, will release as estimated 2.1 Mg/d of particulates (primarily salts) into the atmosphere when the station is in full operation. The saline drift will disperse and settle onto agricultural fields surrounding the station. Field studies were conducted in 1983 to investigate the influence of foliar-applied saline aerosol on crop growth, foliar injury, and tissue elemental concentration on cotton (Gossypium hirsutum L.), alfalfa (medicago sativa L.), and cantaloupe (Cucumis melo L.) in an arid environment. The treatment aerosol solutions simulated treated wastewater effluent and included all essential plant nutrients and other elements, including trace concentrations of heavy metals. The treatments included unsprayed plots, and plots sprayed with salt solutions at 0 (distilled water), 8, 83, and 415 kg/(ha yr). The alfalfa received an additional 829 kg/(ha yr) treatment. The species were evaluated in separate experiments on Mohave clay loam and Sonoita sandy loam soils (Typic Haplargid) near Marana, AZ. Cotton treated with 415 kg/(ha yr) had significantly less chlorosis and tended to be slightly taller than the cotton in the unsprayed plots. The alfalfa treated at a rate of 829 kg/(ha yr) showed significantly more leaf margin necrosis than did the unsprayed alfalfa. In the cantaloupe, there were no visually apparent differences among salt treatments. Hand-harvested cotton plots had a significant reduction is seed cotton yield at the 415 kg/(ha yr) treatment. A similar though nonsignificant, trend towards reduced yield with increased salt treatment was observed in machine-harvested cotton plots.

  20. Re-evaluating the phylogeny of allopolyploid Gossypium L.

    Science.gov (United States)

    Grover, Corrinne E; Gallagher, Joseph P; Jareczek, Josef J; Page, Justin T; Udall, Joshua A; Gore, Michael A; Wendel, Jonathan F

    2015-11-01

    The formation of allopolyploid cotton precipitated a rapid diversification and colonization of dry coastal American tropical and subtropical regions. Previous phylogenetic analyses, combined with molecular divergence analyses, have offered a temporal framework for this radiation, but provide only weak support for some of the resolved branches. Moreover, these earlier analyses did not include the recently recognized sixth polyploid species, G. ekmanianum Wittmack. Here we use targeted sequence capture of multiple loci in conjunction with both concatenated and Bayesian concordance analyses to reevaluate the phylogeny of allopolyploid cotton species. Although phylogenetic resolution afforded by individual genes is often low, sufficient signal was attained both through the concatenated and concordance analyses to provide robust support for the Gossypium polyploid clade, which is reported here.

  1. Feoforbídeo (etoxi-purpurina-18 isolado de Gossypium mustelinum (Malvaceae Ethyl ester putpurin-18 from Gossypium mustelinum (Malvaceae

    Directory of Open Access Journals (Sweden)

    Tania Maria Sarmento Silva

    2010-01-01

    Full Text Available The phaeophorbide ethyl ester named Purpurin-18 and the flavonoids quercetin and kaempferol were obtained by chromatographic procedures from the chloroform fraction of aerial parts of Gossypium mustelinum. The structure of these compound was determined by NMR, IR and mass spectra data analysis. This is the first occurrence of this compound in Angiosperm.

  2. 种间杂交改良陆地棉的纤维品质%Fiber Quality Improvement by Interspecific Hybridization in Upland Cotton

    Institute of Scientific and Technical Information of China (English)

    Ren-zhong LIU; Fu-rong WANG; Liu-ming WANG; Jia-bao WANG; Jing YANG; Qin-hong LIU

    2002-01-01

    @@ In order to transfer genes for extra fiber strength to existing cotton cultivars, we introduced 207 interspecific materials obtained by outcrossing where GG. hirsutum , GG.barbadense , G. sturtianum , G. thurberi , G.harknessii and G. somalense etc. were involved as parents respectively.

  3. Effect of GbKTN1 from Gossypium barbadense on cell elongation of fission yeast(Schizosaccharomyces pombe)

    Institute of Scientific and Technical Information of China (English)

    LI Weimin; WANG Zhixing; JIA Shirong

    2004-01-01

    The GbKTN1 gene was isolated from 10 DPA fiber cells of Gossypium barbadense using 5′RACE/3′RACE. Full-length cDNA of this gene is 2006 bp, including a 113 bp of 5′untranslated region, a 1563 bp of an open reading frame (ORF), and a 327 bp of 3′untranslated region (excluding the stop codon TAA). The ORF of GbKTN1 encodes a 521-amino acid protein with a predicted size of 55 kD. Near C-terminal of the deduced protein there is a putative ATP binding site between amino acid residues from 233 to 414. Southern blot analysis indicated that the GbKTN1 was a single copy gene in G. barbadense. Combining semi-quantitative RT-PCR with Southern blot hybridization revealed that GbKTN1 expressed in all the organs detected such as roots, stems, leaves and fibers. However, the mRNA of GbKTN1 was the most abundant in fiber cells, while it was the lowest in leaves. The GbKTN1 cDNA was transformed into S. pombe to verify its function on cell elongation. Results showed that most yeast cells over expressing GbKTN1 gene were elongated dramatically with an average length increase of 2.18 times than that of the non-induced cells. Even the morphology of some yeast cells appeared irregularly. To the best of our knowledge this is the first evidence that KTN1 is correlated with cell elongation in vivo.

  4. CMD: a Cotton Microsatellite Database resource for Gossypium genomics

    Directory of Open Access Journals (Sweden)

    Liu Shaolin

    2006-05-01

    Full Text Available Abstract Background The Cotton Microsatellite Database (CMD http://www.cottonssr.org is a curated and integrated web-based relational database providing centralized access to publicly available cotton microsatellites, an invaluable resource for basic and applied research in cotton breeding. Description At present CMD contains publication, sequence, primer, mapping and homology data for nine major cotton microsatellite projects, collectively representing 5,484 microsatellites. In addition, CMD displays data for three of the microsatellite projects that have been screened against a panel of core germplasm. The standardized panel consists of 12 diverse genotypes including genetic standards, mapping parents, BAC donors, subgenome representatives, unique breeding lines, exotic introgression sources, and contemporary Upland cottons with significant acreage. A suite of online microsatellite data mining tools are accessible at CMD. These include an SSR server which identifies microsatellites, primers, open reading frames, and GC-content of uploaded sequences; BLAST and FASTA servers providing sequence similarity searches against the existing cotton SSR sequences and primers, a CAP3 server to assemble EST sequences into longer transcripts prior to mining for SSRs, and CMap, a viewer for comparing cotton SSR maps. Conclusion The collection of publicly available cotton SSR markers in a centralized, readily accessible and curated web-enabled database provides a more efficient utilization of microsatellite resources and will help accelerate basic and applied research in molecular breeding and genetic mapping in Gossypium spp.

  5. SENSIBILIDADE DE Rhizoctonia solani Kuhn, A FUNGICIDAS “IN VITRO” E EM PLÂNTULAS DE ALGODOEIRO (Gossypium hirsutum L., EM CONDIÇÕES DE CASA DE VEGETAÇÃO SENSIBILITY OF Rhizoctonia solani Kuhn TO FUNGICIDES “IN VITRO” AND IN COTTON PLANTULES (Gossypium hirsutum L AT GREENHOUSE CONDITIONS

    Directory of Open Access Journals (Sweden)

    Wilson Ferreira de Oliveira

    2007-09-01

    Full Text Available

    Foram instalados nas dependências do Departamento Fitossanitário da Escola de Agronomia - UFG, ensaio “in vitro”, em BDA2 e a nível de Casa de Vegetação, objetivando testar a eficiência de diferentes dosagens de Iprodione + Thiran (Rovrin em comparação com PCNB (Brassicol 75 BR, TMTD (Rhodiauran 70 e Captan + Pencycuron (Monceren para o controle de Rhizoctonia solani Kuhn, na cultura do algodoeiro, através do tratamento de sementes. Os resultados obtidos, nas condições de realização dos ensaios, permitem concluir que os fungicidas Rovrin - 320 g.i.a., Monceren - 210 g.i.a., Rovrin - 240 g.i.a., Rovrin - 200 g.i.a., PCNB - 450 g.i.a./100 litros de água ou 100 kg de sementes mostraram-se eficientes e não diferiram estatisticamente entre si no controle de R. solani, enquanto que o produto TMTD (Rhodiauran 70 na dosagem de 280 g.i.a./100 litros de água ou 100 kg de sementes de algodoeiro não se mostrou eficiente no controle deste agente causal.

    Aiming to test the efficiency of different dosages of Iprodione + Thiram (Rovrin in comparison with PCNB (Brassicol 75 BR, TMTD (Rhodiauran 70 and Captan + Pencycuron (Monceren for controlling Rhizoctonia solani Kuhn, in cotton plantation, through seeds treatment, was mounted essays “in vitro” at greenhouse level and BDA, in the Phytosanitary Department annexes of School of Agronomy-UFG. The results obtained, at essays conditions, permit to conclude that fungicides Rovrin - 320 g.i.a., Monceren - 210 g.i.a., Rovrin - 240 g.i.a., Rovrin - 200 g.i.a., PCNB - 450 g.i.a./l00 liters of water or 100kg of seeds, were efficient and statistically had no variation among them, in controlling R. solani, while chemical product TMTD (Rhodiauran 70, at dosage of 280 g.i.a./100 liters of water or 100 kg of cotton seeds, was not efficient in controlling this causal agent.

  6. Molecular Cloning and Characterization of an Allene Oxide Cyclase Gene Associated with Fiber Strength in Cotton

    Institute of Scientific and Technical Information of China (English)

    WANG Li-man; ZHU You-min; TONG Xiang-chao; HU Wen-jing; CAI Cai-ping; GUO Wang-zhen

    2014-01-01

    Allene oxide cyclase (AOC) is one of the most important enzymes in the biosynthetic pathway of the plant hormone jasmonic acid (JA). AOC catalyzes the conversion of allene oxide into 12-oxo-phytodienoic acid (OPDA), a precursor of JA. Using 28K cotton genome array hybridization, an expressed sequence tag (EST;GenBank accession no. ES792958) was investigated that exhibited signiifcant expression differences between lintless-fuzzless XinWX and linted-fuzzless XinFLM isogenic lines during ifber initiation stages. The EST was used to search the Gossypium EST database (http://www.ncbi.nlm.nih.gov/) for corresponding cDNA sequences encoding full-length open reading frames (ORFs). Identiifed ORFs were conifrmed using transcriptional and genomic data. As a result, a novel gene encoding AOC in cotton (Gossypium hirsutum AOC;GenBank accession no. KF383427) was cloned and characterized. The 741-bp GhAOC gene comprises three exons and two introns and encodes a polypeptide of 246 amino acids. Two homologous copies were identiifed in the tetraploid cotton species G. hirsutum acc. TM-1 and G. barbadense cv. Hai7124, and one copy in the diploid cotton species G. herbaceum and G. raimondii. qRT-PCR showed that the GhAOC transcript was abundant in cotton ifber tissues from 8 to 23 days post anthesis (DPA), and the expression proifles were similar in the two cultivated tetraploid cotton species G. hirsutum acc. TM-1 and G. barbadense cv. Hai7124, with a higher level of transcription in the former. One copy of GhAOC in tetraploid cotton was localized to chromosome 24 (Chr. D8) using the subgenome-speciifc single nucleotide polymorphism (SNP) marker analysis, which co-localized GhAOC to within 10 cM of a ifber strength quantitative trait locus (QTL) reported previously. GhAOC was highly correlated with ifber quality and strength (P=0.014) in an association analysis, suggesting a possible role in cotton ifber development, especially in secondary cell wall thickening.

  7. Analysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches

    Directory of Open Access Journals (Sweden)

    Changwei Bi

    2016-01-01

    Full Text Available Cotton is one of the most important economic crops and the primary source of natural fiber and is an important protein source for animal feed. The complete nuclear and chloroplast (cp genome sequences of G. raimondii are already available but not mitochondria. Here, we assembled the complete mitochondrial (mt DNA sequence of G. raimondii into a circular genome of length of 676,078 bp and performed comparative analyses with other higher plants. The genome contains 39 protein-coding genes, 6 rRNA genes, and 25 tRNA genes. We also identified four larger repeats (63.9 kb, 10.6 kb, 9.1 kb, and 2.5 kb in this mt genome, which may be active in intramolecular recombination in the evolution of cotton. Strikingly, nearly all of the G. raimondii mt genome has been transferred to nucleus on Chr1, and the transfer event must be very recent. Phylogenetic analysis reveals that G. raimondii, as a member of Malvaceae, is much closer to another cotton (G. barbadense than other rosids, and the clade formed by two Gossypium species is sister to Brassicales. The G. raimondii mt genome may provide a crucial foundation for evolutionary analysis, molecular biology, and cytoplasmic male sterility in cotton and other higher plants.

  8. In Silico study for diversing the molecular pathway of pigment formation: An alternative to manual coloring in cotton fibers.

    Directory of Open Access Journals (Sweden)

    Ammara eAhad

    2015-09-01

    Full Text Available Diversity of colors in flowers and fruits is largely due to anthocyanin pigments. The flavonoid/anthocyanin pathway has been most extensively studied. Dihydroflavonol 4-reductase (DFR is a vibrant enzyme of the flavonoid pathway which displays major impact on the formation of anthocyanins, flavan 3-ols and flavonols. The substrate specificity of the DFR was found to play a crucial role in determination of type of anthocyanidins. Altering the flavonoid/ anthocyanin pathway through genetic engineering to develop color of our own choice is an exciting subject of future research. In the present study, comparison among four DFR genes (Gossypium hirsutum, Iris × hollandica, Ang. DFRI and DFRII, sequence alignment for homology as well as protein modeling and docking is demonstrated. Estimation of catalytic sites, prediction of substrate preference and protein docking were the key features of this article. For specific substrate uptake, a proline rich region and positions 12 plus 26 along with other positions emphasizing the 26-amino acid residue region (132-157 was tested. Results showed that proline rich region position 12, 26 and 132-157 plays an important role in selective attachment of DFRs with respective substrates. Further, ‘Expasy ProtParam tool’ results showed that Iris × hollandica DFR amino acids (Asn 9: Asp 23 favorable for reducing DHQ and DHM thus accumulating delphinidin, while Gossypium hirsutum DFR has (Asn 13: Asp 21 hypothesized to consume DHK. Protein docking data showed that amino acid residues in above mentioned positions were just involved in attachment of DFR with substrate and had no role in specific substrate uptake.Advanced bioinformatics analysis has revealed that all above mentioned positions have role in substrate attachment. For substrate specificity, other residues region is involved. It will help in color manipulations in different plant species.

  9. RNA interference for functional genomics and improvement of cotton (Gossypium sp.)

    NARCIS (Netherlands)

    Abdurakhmonov, Ibrokhim Y.; Ayubov, Mirzakamol S.; Ubaydullaeva, Khurshida A.; Buriev, Zabardast T.; Shermatov, Shukhrat E.; Ruziboev, Haydarali S.; Shapulatov, Umidjon; Saha, Sukumar; Ulloa, Mauricio; Yu, John Z.; Percy, Richard G.; Devor, Eric J.; Sharma, Govind C.; Sripathi, Venkateswara R.; Kumpatla, Siva P.; Krol, van der Sander; Kater, Hake D.; Khamidov, Khakimdjan; Salikhov, Shavkat I.; Jenkins, Johnie N.; Abdukarimov, Abdusattor; Pepper, Alan E.

    2016-01-01

    RNA interference (RNAi), is a powerful new technology in the discovery of genetic sequence functions, and has become a valuable tool for functional genomics of cotton (Gossypium sp.). The rapid adoption of RNAi has replaced previous antisense technology. RNAi has aided in the discovery of

  10. Genome-Wide Characterization and Expression Profiles of the Superoxide Dismutase Gene Family in Gossypium

    Directory of Open Access Journals (Sweden)

    Jingbo Zhang

    2016-01-01

    Full Text Available Superoxide dismutase (SOD as a group of significant and ubiquitous enzymes plays a critical function in plant growth and development. Previously this gene family has been investigated in Arabidopsis and rice; it has not yet been characterized in cotton. In our study, it was the first time for us to perform a genome-wide analysis of SOD gene family in cotton. Our results showed that 10 genes of SOD gene family were identified in Gossypium arboreum and Gossypium raimondii, including 6 Cu-Zn-SODs, 2 Fe-SODs, and 2 Mn-SODs. The chromosomal distribution analysis revealed that SOD genes are distributed across 7 chromosomes in Gossypium arboreum and 8 chromosomes in Gossypium raimondii. Segmental duplication is predominant duplication event and major contributor for expansion of SOD gene family. Gene structure and protein structure analysis showed that SOD genes have conserved exon/intron arrangement and motif composition. Microarray-based expression analysis revealed that SOD genes have important function in abiotic stress. Moreover, the tissue-specific expression profile reveals the functional divergence of SOD genes in different organs development of cotton. Taken together, this study has imparted new insights into the putative functions of SOD gene family in cotton. Findings of the present investigation could help in understanding the role of SOD gene family in various aspects of the life cycle of cotton.

  11. RNA interference for functional genomics and improvement of cotton (Gossypium sp.)

    NARCIS (Netherlands)

    Abdurakhmonov, Ibrokhim Y.; Ayubov, Mirzakamol S.; Ubaydullaeva, Khurshida A.; Buriev, Zabardast T.; Shermatov, Shukhrat E.; Ruziboev, Haydarali S.; Shapulatov, Umidjon; Saha, Sukumar; Ulloa, Mauricio; Yu, John Z.; Percy, Richard G.; Devor, Eric J.; Sharma, Govind C.; Sripathi, Venkateswara R.; Kumpatla, Siva P.; Krol, van der Sander; Kater, Hake D.; Khamidov, Khakimdjan; Salikhov, Shavkat I.; Jenkins, Johnie N.; Abdukarimov, Abdusattor; Pepper, Alan E.

    2016-01-01

    RNA interference (RNAi), is a powerful new technology in the discovery of genetic sequence functions, and has become a valuable tool for functional genomics of cotton (Gossypium sp.). The rapid adoption of RNAi has replaced previous antisense technology. RNAi has aided in the discovery of functio

  12. Molecular evolution of the clustered MIC-3 multigene family of Gossypium species.

    Science.gov (United States)

    Buriev, Zabardast T; Saha, Sukumar; Shermatov, Shukhrat E; Jenkins, Johnie N; Abdukarimov, Abdusattor; Stelly, David M; Abdurakhmonov, Ibrokhim Y

    2011-12-01

    The Gossypium MIC-3 (Meloidogyne Induced Cotton-3) gene family is of great interest for molecular evolutionary studies because of its uniqueness to Gossypium species, multi-gene content, clustered localization, and root-knot nematode resistance-associated features. Molecular evolution of the MIC-3 gene family was studied in 15 tetraploid and diploid Gossypium genotypes that collectively represent seven phylogenetically distinct genomes. Synonymous (d(S)) and non-synonymous (d(N)) nucleotide substitution rates suggest that the second of the two exons of the MIC-3 genes has been under strong positive selection pressure, while the first exon has been under strong purifying selection to preserve function. Based on nucleotide substitution rates, we conclude that MIC-3 genes are evolving by a birth-and-death process and that a 'gene amplification' mechanism has helped to retain all duplicate copies, which best fits with the "bait and switch" model of R-gene evolution. The data indicate MIC-3 gene duplication events occurred at various rates, once per 1 million years (MY) in the allotetraploids, once per ~2 MY in the A/F genome clade, and once per ~8 MY in the D-genome clade. Variations in the MIC-3 gene family seem to reflect evolutionary selection for increased functional stability, while also expanding the capacity to develop novel "switch" pockets for responding to diverse pests and pathogens. Such evolutionary roles are congruent with the hypothesis that members of this unique resistance gene family provide fitness advantages in Gossypium.

  13. New HPLC methods to quantitate terpenoid aldehydes in foliage of cotton (Gossypium)

    Science.gov (United States)

    The cotton plant (Gossypium) produces protective terpenoid aldehydes in lysigenous pigment glands. These terpenoids include hemigossypolone, hemigossypolone-6-methyl ether, gossypol, gossypol-6-methyl ether, gossypol-6,6'-dimethyl ether, heliocides H1, H2, H3 and H4, and heliocides B1, B2, B3 and B4...

  14. RNA interference for functional genomics and improvement of cotton (Gossypium species)

    Science.gov (United States)

    RNA interference (RNAi), is a powerful new technology in the discovery of genetic sequence functions, and has become a valuable tool for functional genomics of cotton (Gossypium ssp.). The rapid adoption of RNAi has replaced previous antisense technology. RNAi has aided in the discovery of function ...

  15. QTL Analysis in Tetraploid Cotton

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    QTL analyses were performed in tetraploid cotton.An interspecific F2 population consisting of 69 plants,which was developed from the cross between Gossypium hirsutum L.,cv.Handan 208(characterized as high fiber yield) and G.barbadense L.,cv.Pima 90(characterized as excellent fiber quality),was genotyped with SSR,RAPD,SRAP,and REMAP markers.A 1029-locus linkage map was

  16. Analysis of root-knot nematode and fusarium wilt disease resistance in cotton (Gossypium spp.) using chromosome substitution lines from two alien species.

    Science.gov (United States)

    Ulloa, M; Wang, C; Saha, S; Hutmacher, R B; Stelly, D M; Jenkins, J N; Burke, J; Roberts, P A

    2016-04-01

    Chromosome substitution (CS) lines in plants are a powerful genetic resource for analyzing the contribution of chromosome segments to phenotypic variance. In this study, a series of interspecific cotton (Gossypium spp.) CS lines were used to identify a new germplasm resource, and to validate chromosomal regions and favorable alleles associated with nematode or fungal disease resistance traits. The CS lines were developed in the G. hirsutum L. TM-1 background with chromosome or chromosome segment substitutions from G. barbadense L. Pima 3-79 or G. tomentosum. Root-knot nematode (Meloidogyne incognita) and fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) (races 1 and 4) resistance alleles and quantitative trait loci (QTL) previously placed on cotton chromosomes using SSR markers in two interspecific recombinant inbred line populations were chosen for testing. Phenotypic responses of increased resistance or susceptibility in controlled inoculation and infested field assays confirmed the resistance QTLs, based on substitution with the positive or negative allele for resistance. Lines CS-B22Lo, CS-B04, and CS-B18 showed high resistance to nematode root-galling, confirming QTLs on chromosomes 4 and 22 (long arm) with resistance alleles from Pima 3-79. Line CS-B16 had less fusarium race 1-induced vascular root staining and higher percent survival than the TM-1 parent, confirming a major resistance QTL on chromosome 16. Lines CS-B(17-11) and CS-B17 had high fusarium race 4 vascular symptoms and low survival due to susceptible alleles introgressed from Pima 3-79, confirming the localization on chromosome 17 of an identified QTL with resistance alleles from TM1 and other resistant lines. Analyses validated regions on chromosomes 11, 16, and 17 harboring nematode and fusarium wilt resistance genes and demonstrated the value of CS lines as both a germplasm resource for breeding programs and as a powerful genetic analysis tool for determining QTL effects for disease

  17. A major QTL introgressed from wild Lycopersicon hirsutum confers chilling tolerance to cultivated tomato (Lycopersicon esculentum).

    Science.gov (United States)

    John Goodstal, F; Kohler, Glenn R; Randall, Leslie B; Bloom, Arnold J; St Clair, Dina A

    2005-09-01

    Many plants of tropical or subtropical origin, such as tomato, suffer damage under chilling temperatures (under 10 degrees C but above 0 degrees C). An earlier study identified several quantitative trait loci (QTLs) for shoot turgor maintenance (stm) under root chilling in an interspecific backcross population derived from crossing chilling-susceptible cultivated tomato (Lycopersicon esculentum) and chilling-tolerant wild L. hirsutum. The QTL with the greatest phenotypic effect on stm was located in a 28 cM region on chromosome 9 (designated stm 9), and enhanced chilling-tolerance was conferred by the presence of the Lycopersicon hirsutum allele at this QTL. Here, near-isogenic lines (NILs) were used to verify the effect of stm 9, and recombinant sub-NILs were used to fine map its position. Replicated experiments were performed with NILs and sub-NILs in a refrigerated hydroponic tank in the greenhouse. Sub-NIL data was analyzed using least square means separations, marker-genotype mean t-tests, and composite interval mapping. A dominant QTL controlling shoot turgor maintenance under root chilling was confirmed on chromosome 9 using both NILs and sub-NILs. Furthermore, sub-NILs permitted localization of stm 9 to a 2.7 cM interval within the original 28 cM QTL region. If the presence of the L. hirsutum allele at stm 9 also confers chilling-tolerance in L. esculentum plants grown under field conditions, it has the potential to expand the geographic areas in which cultivated tomato can be grown for commercial production.

  18. EFEITO DE TRICOMAS, ALELOQUÍMICOS E NUTRIENTES NA RESISTÊNCIA DE LYCOPERSICON HIRSUTUM À TRAÇA-DO-TOMATEIRO EFFECT OF TRICHOMES, ALELLOCHEMICALS AND MINERALS ON THE RESISTANCE OF LYCOPERSICON HIRSUTUM TO TOMATO LEAF MINER

    Directory of Open Access Journals (Sweden)

    GERMANO LEÃO DEMOLIN LEITE

    1999-11-01

    Full Text Available Estudos foram conduzidos com o objetivo de verificar o efeito de tricomas, aleloquímicos e nutrientes nas folhas de partes do dossel das plantas na resistência de Lycopersicon hirsutum à traça- do-tomateiro, Tuta absoluta (Lepidoptera: Gelechiidae. Foram quantificados os teores de 2-tridecanona (2-TD, 2-undecanona (2-UD, N, P, K, Ca e Mg, densidade e tipos de tricomas e tamanho das folhas nos terços apical, mediano e basal do dossel de plantas de L. hirsutum e de L. esculentum e estudaram- se os efeitos destes fatores sobre características biológicas de T. absoluta. Observou-se elevação no teor de 2-TD da base para o ápice do dossel. Não se detectou diferença significativa quanto ao número de ovos de T. absoluta ao longo do dossel de L. hirsutum, constatando-se em L. esculentum maior oviposição nos terços apical e mediano do que no basal. As folhas do terço apical de L. hirsutum apresentaram maior efeito deletério sobre as larvas de traça.The objective of this work was to study the effect of trichomes, alellochemicals and minerals in the leaves of different canopy heights on the resistance of Lycopersicon hirsutum to tomato leaf miner, Tuta absoluta (Lepidoptera: Gelechiidae. Effects of 2-tridecanone (2-TD, 2-undecanone (2-UD, N, P, K, Ca and Mg levels, density and types of trichomes and leaf area on apical, medium and basal parts of plant dossel of L. hirsutum and L. esculentum on the oviposition and mines number of T. absoluta was studied. Production of 2-TD increased from the bottom to the top of the canopy. The apical part of plants of L. hirsutum showed more antibiotic effect on the caterpillar. T. absoluta oviposited more on leaves of the apical and medium portion of the plants than in the basal parts of L. esculentum.

  19. Biomonitoring of Epilobium hirsutum L. Health Status to Assess Water Ecotoxicity in Constructed Wetlands Treating Mixtures of Contaminants

    Directory of Open Access Journals (Sweden)

    Anna Guittonny-Philippe

    2015-02-01

    Full Text Available For the treatment of wastewater containing organic pollutants and metals in constructed wetlands (CWs, phytoindicators may help in guiding management practices for plants and optimizing phytoremediation processes. Hairy willow-herb (Epilobium hirsutum L. is a fast growing species commonly found in European CWs that could constitute a suitable phytoindicator of metal toxicity. E. hirsutum was exposed for 113 days in microcosm CWs, to a metal and metalloid mixture (MPM, containing Al, As, Cd, Cr, Cu, Fe, Mn, Ni, Pb, Sn, Zn, an organic pollutant mixture (OPM, containing hydrocarbonsC10-C40, phenanthrene, pyrene, anionic detergent LAS and an organic pollutant and metal and metalloid mixture (OMPM, separately and at concentration levels mimicking levels of industrial effluents. Analyses of metal and As concentrations in biomass, and different biometric and physiological measurements were performed. Results showed that metal uptake patterns were affected by the type of pollutant mixture, resulting in variation of toxicity symptoms in E. hirsutum plants. Some of them appeared to be similar under MPM and OMPM conditions (leaf chlorosis and tip-burning, decrease of green leaf proportion, while others were characteristic of each pollutant mixture (MPM: Decrease of water content, increase of phenol content; OMPM: reduction of limb length, inhibition of vegetative reproduction, increase of chlorophyll content and Nitrogen balance index. Results emphasize the potential of E. hirsutum as a bioindicator species to be used in European CWs treating water with metal, metalloid and organic pollutants.

  20. Biodegradation of methoxychlor and its metabolites by the white rot fungus Stereum hirsutum related to the inactivation of estrogenic activity.

    Science.gov (United States)

    Lee, Soo-Min; Lee, Jae-Won; Park, Ki-Ryeong; Hong, Eui-Ju; Jeung, Eui-Bae; Kim, Myung-Kil; Kang, Ha-Young; Choi, In-Gyu

    2006-01-01

    The white rot fungus Stereum hirsutum was used to degrade methoxychlor [2,2,2-trichloro-1,1-bis(4-methoxyphenyl)ethane] in culture and the degraded products were extensively determined. The estrogenic activity of the degraded products of methoxychlor was examined using cell proliferation and pS2 gene expression assays in MCF-7 cells. S. hirsutum showed high resistance to methoxychlor 100 ppm, and the mycelial growth was fully completed within 8 days of incubation at 30 degrees C. Methoxychlor in liquid culture medium was gradually converted into 2,2-dichloro-1,1-bis(4-methoxyphenyl)ethane, 2,2-dichloro-1,1-bis(4-methoxyphenyl)ethylene, 2-chloro-1,1-bis(4-methoxyphenyl) ethane, 2-chloro-1,1-bis(4-methoxyphenyl) ethylene, and 1,1-bis(4-methoxyphenyl)ethylene, indicating that methoxychlor is dominantly degraded by dechlorination and dehydrogenation. MCF-7 cells were demonstrated to proliferate actively at the 10-5 M concentration of methoxychlor. However, cell proliferation was significantly inhibited by the incubation with methoxychlor culture media containing S. hirsutum. In addition, the expression level of pS2 mRNA was increased at the concentration (10-5 M) of methoxychlor. The reductive effect of S. hirsutum for methoxychlor was clear but not significant as in the proliferation assay.

  1. PMC- FISHs in Hybrids of Tetraploid Cultivated and Diploid Wild Gossypium Species%四倍体栽培棉与二倍体野生棉杂种PMC-FISH研究

    Institute of Scientific and Technical Information of China (English)

    凌键; 王坤波; 邹美娟; 宋国立; 王春英; 彭仁海; 刘方; 黎绍惠; 张香娣; 王玉红

    2009-01-01

    ad + 7Ⅱdd + 5Ⅰa + 7Ⅰd for (AD)1D5 (G. hirsutum × G. raimondii), 1Ⅴaaaad +1Ⅲadd + 2Ⅱad + 8Ⅱdd + 6Ⅰa + 5Ⅰd for (AD)2D4 (G. barbadense × G. aridum), 2Ⅲadd (adc or acc) + 1Ⅱaa + 9Ⅰa + 4Ⅱcc (dc or dd) + 14Ⅰd (c) for (AD)1C3 (G. hirsutum × G. australe), and 1Ⅱaa + 1Ⅱad (ac)+ 10Ⅰa + 6Ⅱcc (dc or dd) + 13Ⅰd (c) for (AD)1C1-n (G. hirsutum × G. nandewarense), respectively. While the two cultivated tetraploid species, G. hirsutum (AD)1 and G. barbadense (AD)2, which were used for the triploid female parents, displayed the same chromosome configuration as 13Ⅱaa + 13Ⅱdd. It is obvious that there were more bivalents but less univalents in ADD [(AD)1D5 and (AD)2D4] type than that in ADC [(AD)1C3 and (AD)1C1-n] type of triploid F1 hybrids and with fewer A-subgenome univalents and more A-subgenome combined pairings in ADD than in ADC type of triploid F1 hybrids. The results indicated that specific relationship of AD cultivated tetraploid species with D genome may be much closer than with C genome, and that the PMC-FISH technology may play an irreplaceable role in the specific relationship analyses of triploid F1 hybrids in Gossypium.

  2. Boosting seed development as a new strategy to increase cotton fiber yield and quality.

    Science.gov (United States)

    Ruan, Yong-Ling

    2013-07-01

    Cotton (Gossypium spp.) is the most important textile crop worldwide due to its cellulosic mature fibers, which are single-celled hairs initiated from the cotton ovule epidermis at anthesis. Research to improve cotton fiber yield and quality in recent years has been largely focused on identifying genes regulating fiber cell initiation, elongation and cellulose synthesis. However, manipulating some of those candidate genes has yielded no effect or only a marginally positive effect on fiber yield or quality. On the other hand, evolutionary comparison and transgenic studies have clearly shown that cotton fiber growth is intimately controlled by seed development. Therefore, I propose that enhancing seed development could be a more effective and achievable strategy to increase fiber yield and quality. © 2013 Institute of Botany, Chinese Academy of Sciences.

  3. Boosting Seed Development as a New Strategy to Increase Cotton Fiber Yield and Quality

    Institute of Scientific and Technical Information of China (English)

    Yong-Ling Ruan

    2013-01-01

    Cotton (Gossypium spp.) is the most important textile crop worldwide due to its cellulosic mature fibers,which are single-celled hairs initiated from the cotton ovule epidermis at anthesis.Research to improve cotton fiber yield and quality in recent years has been largely focused on identifying genes regulating fiber cell initiation,elongation and cellulose synthesis.However,manipulating some of those candidate genes has yielded no effect or only a marginally positive effect on fiber yield or quality.On the other hand,evolutionary comparison and transgenic studies have clearly shown that cotton fiber growth is intimately controlled by seed development.Therefore,I propose that enhancing seed development could be a more effective and achievable strategy to increase fiber yield and quality.

  4. 棉属的种质资源%Gossypium Germplasm Resources

    Institute of Scientific and Technical Information of China (English)

    R. G. PERCY

    2002-01-01

    @@ The genetic variability residing in diploid and tetraploid species of the Gossypium genus represents a large, under-utilized resource in current cotton improvement efforts. Genetic diversity in elite germplasm is reported to be narrow. Actual diversity on the land is narrower, due to preferential mass planting of successful cultivars and breeding techniques that tend to promote an over-reliance on a few genotypes.

  5. Transcriptome profiling of Gossypium barbadense inoculated with Verticillium dahliae provides a resource for cotton improvement

    OpenAIRE

    2013-01-01

    Background Verticillium wilt, caused by the fungal pathogen Verticillium dahliae, is the most severe disease in cotton (Gossypium spp.), causing great lint losses worldwide. Disease management could be achieved in the field if genetically improved, resistant plants were used. However, the interaction between V. dahliae and cotton is a complicated process, and its molecular mechanism remains obscure. To understand better the defense response to this pathogen as a means for obtaining more toler...

  6. Transcriptome-wide identification of salt-responsive members of the WRKY gene family in Gossypium aridum.

    Directory of Open Access Journals (Sweden)

    Xinqi Fan

    Full Text Available WRKY transcription factors are plant-specific, zinc finger-type transcription factors. The WRKY superfamily is involved in abiotic stress responses in many crops including cotton, a major fiber crop that is widely cultivated and consumed throughout the world. Salinity is an important abiotic stress that results in considerable yield losses. In this study, we identified 109 WRKY genes (GarWRKYs in a salt-tolerant wild cotton species Gossypium aridum from transcriptome sequencing data to elucidate the roles of these factors in cotton salt tolerance. According to their structural features, the predicted members were divided into three groups (Groups I-III, as previously described for Arabidopsis. Furthermore, 28 salt-responsive GarWRKY genes were identified from digital gene expression data and subjected to real-time quantitative RT-PCR analysis. The expression patterns of most GarWRKY genes revealed by this analysis are in good agreement with those revealed by RNA-Seq analysis. RT-PCR analysis revealed that 27 GarWRKY genes were expressed in roots and one was exclusively expressed in roots. Analysis of gene orthology and motif compositions indicated that WRKY members from Arabidopsis, rice and soybean generally shared the similar motifs within the same subgroup, suggesting they have the similar function. Overexpression-GarWRKY17 and -GarWRKY104 in Arabidopsis revealed that they could positively regulate salt tolerance of transgenic Arabidopsis during different development stages. The comprehensive data generated in this study provide a platform for elucidating the functions of WRKY transcription factors in salt tolerance of G. aridum. In addition, GarWRKYs related to salt tolerance identified in this study will be potential candidates for genetic improvement of cultivated cotton salt stress tolerance.

  7. Cloning, Expression, and Functional Analysis of GhMYB0 Gene from Cotton (Gossypium hirsumtum L.)%棉花GhMYB0基因的克隆、表达分析及功能鉴定

    Institute of Scientific and Technical Information of China (English)

    王诺菡; 喻树迅; 于霁雯; 吴嫚; 马启峰; 李兴丽; 裴文锋; 李海晶; 黄双领; 张金发

    2014-01-01

    MYB类转录因子是植物转录因子最大的家族之一,参与控制植物腺毛细胞的模式和形态建成。本研究利用雷蒙德氏棉(Gossypium raimondii) D5基因组数据库以 AtMYB0(GL1, NM_113708)蛋白为参比序列获得同源基因GrMYB0,从徐州142中克隆了陆地棉的GhMYB0,其开放阅读框长度为843 bp,编码280个氨基酸。经过保守结构域分析和亚细胞定位确定GhMYB0为R2R3-MYB转录因子。qRT-PCR的结果表明, GhMYB0在徐州142开花当天开始高调表达,开花后20 d表达量达高峰;在所有的组织器官中,花中表达量最高,其次为胚珠。转基因功能分析结果表明,在野生型拟南芥(Columbia)中过表达 GhMYB0,使其叶片表皮毛与野生型相比明显减少;该基因在拟南芥突变体 gl-1中过表达,能恢复表皮毛缺失型突变体的表型,说明该基因可能对拟南芥表皮毛的形态建成发挥一定作用,本试验为研究R2R3-MYB转录因子在棉纤维起始和伸长过程中的调控作用提供有力证据。%MYB transcription factor, one of the most important protein families in plants, is involved in the regulation of secon-dary metabolism, morphogenesis of plant, responding to environment stress and plant hormone. In this study, we used D5 genomic bank of Gossypium raimondii as the reference to AtMYB0 (GL1, NM_113708) protein, and cloned the full-length cDNA of a new MYB transcription factor gene GhMYB0 from cotton (Gossypium hirsutum L.). The open reading frame of GhMYB0 is 843 bp in length, which encodes 280 amino acid residues. GhMYB0 was confirmed as R2R3-MYB transcription factor via conserved struc-ture analysis and subcellular localization. The qRT-PCR result indicated that GhMYB0 was highly expressed at the blossom day, its expresssion amount reached the peak after 20 days, with the most amount in flower, then in ovules. Transgenic funtion analysis indicated that GhMYB0 over-expressed in Arabidopsis lines, showing fewer trichomes in leaf

  8. Gossypium herbaceum Negative Mutant for Fiber Elongation a Useful Isoline for Identification of Genes for Fiber Elongation

    Institute of Scientific and Technical Information of China (English)

    KATAGERI I S; KHADI B M; ANANDKUMA P; REDDY V S; VAMADEVAAH H M

    2008-01-01

    @@ Actin cytoskeleton plays an important role in cell morphogenesis in plants as demonstrated by pharmacological,biochemical,and genetic studies.The actin cytoskeleton may be involved in the transportation of organelles and vesicles carrying membranes and cell wall components to the site of cell growth as in root hairs,trichome cells,and pollen tubes.Actins in plants are encoded by a multigene family that comprises dozens or even hundreds of actin genes.

  9. Characteristics of fertile somatic hybrids of G. hirsutum L. and G. trilobum generated via protoplast fusion.

    Science.gov (United States)

    Yu, X S; Chu, B J; Liu, R E; Sun, J; Brian, Joseph Jones; Wang, H Z; Shuijin, Zhu; Sun, Y Q

    2012-11-01

    Fertile somatic hybrids between tetraploid upland cotton G. hirsutum L. cv. Coker 312 and wild cotton G. trilobum were generated by symmetric electrofusion. Comparisons of morphology, combined with flow cytometric, RAPD, SRAP and AFLP analyses confirmed the hybrid nature of the regenerated plants. The hybrids differed morphologically from the parent plants. Flow cytometric analysis showed that the hybrids had DNA similar in amount to the total combined DNA content of the two parents, and the use of molecular markers revealed that the hybrids contained genomic fragments from both fusion parents, further indicating the hybrid nature of the regenerated plants. The stability of the morphological features of the hybrids was examined in following generations. The hexaploid fusion plants showed strong photosynthesis and a high expression level of some photosystem-related genes. Our results suggest that novel traits may be incorporated in cotton breeding programs through the production of somatic hybrids and the backcrossing of these plants with elite cultivars.

  10. The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization.

    Directory of Open Access Journals (Sweden)

    Qian Yan

    Full Text Available Basic/helix-loop-helix (bHLH proteins comprise one of the largest transcription factor families and play important roles in diverse cellular and molecular processes. Comprehensive analyses of the composition and evolution of the bHLH family in cotton are essential to elucidate their functions and the molecular basis of cotton development. By searching bHLH homologous genes in sequenced diploid cotton genomes (Gossypium raimondii and G. arboreum, a set of cotton bHLH reference genes containing 289 paralogs were identified and named as GobHLH001-289. Based on their phylogenetic relationships, these cotton bHLH proteins were clustered into 27 subfamilies. Compared to those in Arabidopsis and cacao, cotton bHLH proteins generally increased in number, but unevenly in different subfamilies. To further uncover evolutionary changes of bHLH genes during tetraploidization of cotton, all genes of S5a and S5b subfamilies in upland cotton and its diploid progenitors were cloned and compared, and their transcript profiles were determined in upland cotton. A total of 10 genes of S5a and S5b subfamilies (doubled from A- and D-genome progenitors maintained in tetraploid cottons. The major sequence changes in upland cotton included a 15-bp in-frame deletion in GhbHLH130D and a long terminal repeat retrotransposon inserted in GhbHLH062A, which eliminated GhbHLH062A expression in various tissues. The S5a and S5b bHLH genes of A and D genomes (except GobHLH062 showed similar transcription patterns in various tissues including roots, stems, leaves, petals, ovules, and fibers, while the A- and D-genome genes of GobHLH110 and GobHLH130 displayed clearly different transcript profiles during fiber development. In total, this study represented a genome-wide analysis of cotton bHLH family, and revealed significant changes in sequence and expression of these genes in tetraploid cottons, which paved the way for further functional analyses of bHLH genes in the cotton genus.

  11. Genetic Analysis of a Novel Dwarf Mutant,AISHENG98,from Upland Cotton

    Institute of Scientific and Technical Information of China (English)

    ZHANG Chao; WANG Jie; JIA Yin-hua; DU Xiong-ming

    2008-01-01

    @@ Cotton (Gossypium hirsutum L.) is the most important textile fiber and the second most important oil seed source in the world.To control excessive growth of cotton plant height,which may result in shading and lodging,farmers and researchers have used plant growth regulators that increased the production costs.So the breeding for dwarf plant is the best way to solve this problem.In the past,some dwarf mutants of cotton with recessive gene controlled were reported.

  12. Transgenic cotton plants expressing Cry1Ia12 toxin confer resistance to fall armyworm (Spodoptera frugiperda) and cotton boll weevil (Anthonomus grandis)

    OpenAIRE

    Raquel Sampaio Oliveira; Osmundo Brilhante Oliveira-Neto; Hudson Fernando Moura; Leonardo Lima Pepino de Macedo; Fabricio Barbosa Monteiro Arraes; Wagner Alexandre Lucena; Isabela Tristan Lourenço-Tessuti; Aulus Estevão Anjos de Deus Barbosa; Maria Cristina Mattar Silva; Maria Fátima eGrossi de Sá

    2016-01-01

    Gossypium hirsutum (commercial cooton) is one of the most economically important fibers sources and a commodity crop highly affected by insect pests and pathogens. Several transgenic approaches have been developed to improve cotton resistance to insect pests, through the transgenic expression of different factors, including Cry toxins, proteinase inhibitors, and toxic peptides, among others. In the present study, we developed transgenic cotton plants by fertilized floral buds injection (throu...

  13. Two Loci from Lycopersicon hirsutum LA407 Confer Resistance to Strains of Clavibacter michiganensis subsp. michiganensis.

    Science.gov (United States)

    Kabelka, E; Franchino, B; Francis, D M

    2002-05-01

    ABSTRACT We used molecular markers to identify quantitative trait loci (QTL) that contribute to resistance to bacterial canker of tomato caused by Clavibacter michiganensis subsp. michiganensis. Resistance was first identified as a marker-trait association in an inbred backcross (IBC) population derived from crossing Lycopersicon hirsutum accession (LA407) with L. esculentum. Single-marker QTL analysis suggested that at least two loci originating from L. hirsutum LA407, Rcm 2.0 on chromosome 2 and Rcm 5.1 on chromosome 5, contribute to resistance in replicated trials. Two segregating F(2) populations were developed by crossing resistant inbred backcross lines (IBLs) to elite L. esculentum lines and used to confirm QTL associations detected in the IBC population. In these populations, realized heritability estimates were higher for selection based on maximal disease than for selection based on disease progression. Realized heritability in the population carrying Rcm 2.0 was 0.63 and 0.14, respectively, for each selection criteria. Realized heritability estimates were 0.85 for selection based on maximal disease and 0.37 for selection based on disease progression in a population carrying Rcm 5.1. The disease response of F(3) families selected for resistance suggested that both Rcm 2.0 and Rcm 5.1 confer resistance to bacterial strains in the repetitive sequence-based polymerase chain reaction DNA fingerprint classes A and C. Markers linked to Rcm 2.0 explained up to 56% of the total phenotypic variation for resistance in one population, and markers linked to Rcm 5.1 explained up to 73% of the total phenotypic variation for resistance in a separate population.

  14. Resistência de espécies e cultivares de algodão (Gossypium spp. ao herbicida diuron Resistance of cotton species and cultivars to the herbicide diuron

    Directory of Open Access Journals (Sweden)

    N. E. de M. Beltrão

    1983-06-01

    algodão, deve-se levar em consideração, além dos demais fatores já sabidos, o cultivar a ser plantado.To determine the resistance of cotton species and cultivars to the herbicide diuron, a green house test was conducted in Viçosa, Minas Gerais. Genotypes of the species Gossypium: hirsutum latifolium Hutch. ( cv IAC 17 and BR 1 , G. hirsutum marie galante Hutch. (cv Veludo C 17 , and G. barbadense brasiliense Hutch. (cv rim-de-boi were studied . A split plot in a randomized complete block design was utilized in this experiment. The main plots were the herbicid e dosage (0,0 0, 0,0 48, 0,0 96, 0, 35 7, 0, 71 4 an d 1, 42 8 kg a. i. /h a applied to the sand subs trat when the plants had one or two true leaves, and the subplot were the genotypes. Each plot was represented by a wood bos (3 7 x 47 x 11/cm filled with washed sand. The seeds were acid deslinted before planting. To measure the resistance several parameters were observed such as: Phitotoxicity level 15 days after application, plant height, fresh and dry weight of plants, rate of stem elongation and rate of relative growth of aerial part. The results showed that cv IAC 17 and BR -1 were the most resistant to the chemical stress of the herbicide, the cv Veludo C 71 had in termediate resistance being the cv Rim de Boi the kg a . i . /ha was ha rmful to the plants of this cultivar. The results indicates that one should consider the specie and cultivar, before recommend ingthe application of diuron to a cotton field.

  15. Physiological and antioxidant responses of cotton and spurred anoda under interference and mild drought

    National Research Council Canada - National Science Library

    H. Harish Ratnayaka; William T. Molin; Tracy M. Sterling

    2003-01-01

    ... (Gossypium hirsutum L. cv. Delta Pine 5415, and Gossypium barbadense L. cv. Pima S-7) and spurred anoda (Anoda cristata L. Schlecht.) of the Malvaceae. Without interference, cotton and spurred anoda had similar net photosynthesis...

  16. Uniqueness of the Gossypium mustelinum Genome Revealed by GISH and 45S rDNA FISH

    Institute of Scientific and Technical Information of China (English)

    Qiong Wu; Fang Liu; Shaohui Li; Guoli Song; Chunying Wang; Xiangdi Zhang; Yuhong Wang

    2013-01-01

    Gossypium mustelinum ((AD)4) is one of five disomic species in Gossypium.Three 45S ribosomal DNA (rDNA) loci were detected in (AD)4 with 45S rDNA as probe,and three pairs of brighter signals were detected with genomic DNA (gDNA) of Gossypium D genome species as probes.The size and the location of these brighter signals were the same as those detected with 45S rDNA as probe,and were named GISH-NOR.One of them was super-major,which accounted for the fact that about one-half of its chromosome at metaphase was located at chromosome 3,and other two were minor and located at chromosomes 5 and 9,respectively.All GISH-NORs were located in A sub-genome chromosomes,separate from the other four allopolypioid cotton species.GISH-NOR were detected with D genome species as probe,but not A.The greatly abnormal sizes and sites of (AD)4 NORs or GISH-NORs indicate a possible mechanism for 45S rDNA diversification following (AD)4 speciation.Comparisons of GISH intensities and GISH-NOR production with gDNA probes between A and D genomes show that the better relationship of (AD)4 is with A genome.The shortest two chromosomes of A sub-genome of G.mustelinum were shorter than the longest chromosome of D sub-genome chromosomes.Therefore,the longest 13 chromosomes of tetraploid cotton being classified as A sub-genome,while the shorter 13 chromosomes being classified as D sub-genome in traditional cytogenetic and karyotype analyses may not be entirely correct.

  17. Fiber diffraction without fibers.

    Science.gov (United States)

    Poon, H-C; Schwander, P; Uddin, M; Saldin, D K

    2013-06-28

    Postprocessing of diffraction patterns of completely randomly oriented helical particles, as measured, for example, in so-called "diffract-and-destroy" experiments with an x-ray free electron laser can yield "fiber diffraction" patterns expected of fibrous bundles of the particles. This will allow "single-axis alignment" to be performed computationally, thus obviating the need to do this by experimental means such as forming fibers and laser or flow alignment. The structure of such particles may then be found by either iterative phasing methods or standard methods of fiber diffraction.

  18. Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes.

    Science.gov (United States)

    Richard C. Cronn; Randall L. Small; Tamara Hanselkorn; Jonathan F. Wendel

    2002-01-01

    Previous molecular phylogenetic studies have failed to resolve the branching order among the major cotton (Gossypium) lineages, and it has been unclear whether this reflects actual history (rapid radiation) or sampling properties of the genes evaluated. In this paper, we reconsider the phylogenetic relationships of diploid cotton genome groups using DNA sequences from...

  19. Comparative genomics of Gossypium and Arabidopsis: Unraveling the consequences of both ancient and recent polyploidy

    Science.gov (United States)

    Rong, Junkang; Bowers, John E.; Schulze, Stefan R.; Waghmare, Vijay N.; Rogers, Carl J.; Pierce, Gary J.; Zhang, Hua; Estill, James C.; Paterson, Andrew H.

    2005-01-01

    Both ancient and recent polyploidy, together with post-polyploidization loss of many duplicated gene copies, complicates angiosperm comparative genomics. To explore an approach by which these challenges might be mitigated, genetic maps of extant diploid and tetraploid cottons (Gossypium spp.) were used to infer the approximate order of 3016 loci along the chromosomes of their hypothetical common ancestor. The inferred Gossypium gene order corresponded more closely than the original maps did to a similarly inferred ancestral gene order predating an independent paleopolyploidization (α) in Arabidopsis. At least 59% of the cotton map and 53% of the Arabidopsis transcriptome showed correspondence in multilocus gene arrangements based on one or both of two software packages (CrimeStatII, FISH). Genomic regions in which chromosome structural rearrangement has been rapid (obscuring gene order correspondence) have also been subject to greater divergence of individual gene sequences. About 26%-44% of corresponding regions involved multiple Arabidopsis or cotton chromosomes, in some cases consistent with known, more ancient, duplications. The genomic distributions of multiple-locus probes provided early insight into the consequences for chromosome structure of an ancient large-scale duplication in cotton. Inferences that mitigate the consequences of ancient duplications improve leveraging of genomic information for model organisms in the study of more complex genomes. PMID:16109973

  20. AcEST: DK954842 [AcEST

    Lifescience Database Archive (English)

    Full Text Available y... 42 0.021 tr|B6TWK6|B6TWK6_MAIZE Fiber expressed protein OS=Zea mays PE=2 ......NGIIITIAASSRFNQNNGEKDQMEQMQPRPKIS 95 >tr|Q4JLV7|Q4JLV7_GOSHI Fiber expressed protein OS=Gossypium hirsutum P...+IS Sbjct: 46 WSGFRSWLKPPYLYVVINGIIITIAASSRFNQNNGEKDQMEQMQPRPKIS 95 >tr|B6TWK6|B6TWK6_MAIZE Fiber expressed ... protein OS=Vitis... 43 0.016 tr|Q9SBD9|Q9SBD9_GOSHI Cotton fiber expressed protein 3 OS=Gossy... 42 0.021 tr|Q4JLV7|Q4JLV7_GOSHI Fib...er expressed protein OS=Gossypium hirs... 42 0.021 tr|O81374|O81374_GOSHI Cotton fi

  1. Application of SNAC1 Gene as a Selection Marker Gene for Cotton (Gossypium hirsutum L.)Transformation%SNAC1基因作为筛选标记基因用于棉花的遗传转化

    Institute of Scientific and Technical Information of China (English)

    李雪林; 刘冠泽; 聂以春; 郭小平; 张献龙

    2010-01-01

    以SNAC1基因作为筛选标记基因,NaC1作为筛选剂,通过农杆菌介导法将SNAC1和GUS基因导入棉花细胞并得到胚性愈伤组织.经过PCR检测证实,外源基因已经整合到棉花基因组中,GUS染色证明GUS基因得到表达.研究了NaC1作为棉花转化细胞的筛选剂在农杆菌介导转化中的应用浓度及方法,即NaC1的筛选浓度在1.1%~1.5%(W/V)之间,在愈伤组织诱导初期适当低一点,随着愈伤组织的生长而加大筛选浓度.由于NaC1不利于胚的分化,经过2~3次继代筛选后要及时去除NaC1以促进胚的分化.

  2. 两个新疆棉花品种体细胞胚胎发生的比较研究%Comparative Studies of Somatic Embryogenesis of Two Cotton Cultivars (Gossypium hirsutum L.) in Xinjiang

    Institute of Scientific and Technical Information of China (English)

    李鹏飞; 程文翰; 王凡龙; 张新宇; 朱华国; 孙杰

    2013-01-01

      以新疆棉区主栽品种新陆早33号和新彩棉7号为实验材料,比较不同激素组合对两者体细胞胚胎发生过程的影响,以建立高效再生体系。结果表明,新陆早33号和新彩棉7号在2,4-D+KT的激素组合下出愈率均为100%,降低2,4-D浓度有利于胚性愈伤组织的分化,分化率分别达到60.0%和7.5%;在IBA+KT的激素组合下出愈情况相对较差,分别为72.5%和85.0%;继代几次后,两个品种的胚性愈伤组织分化率可分别达到45%和55%,新陆早33号和新彩棉7号分别在DK和IK激素组合下更有利于体细胞胚胎发生过程。进一步观察发现,新彩棉7号分化形成胚状体的能力比新陆早33号更强,两品种均能在6个月内获得再生植株。再生体系的建立,为新疆棉花开展分子育种工作奠定了基础。%Two major cultivars, Xinluzao33 and Xincaimian7 were studied for establishing efficient regeneration system, and the procedures of somatic embryogenesis were compared in different hormone combination. Calli induction rates of the two varieties reached 100% in 2,4-D+KT hormone combination; the induction rates of embryogenic calli of Xinluzao33 and Xincaimian7 were significantly enhanced through reducing the concentration of 2,4-D, and could reach 60.0%and 7.5%, respectively. Calli induction rates of the two varieties were lower in IBA+KT hormone combination, reached 72.5%and 85%in Xinluzao33 and Xincaimian7, respectively. Subculture for several months late, the induction rates of embryogenic calli of Xinluzao33 and Xincaimian7 could reach 45%and 55%, respectively. DK and IK hormone combination were more suitable for Xinluzao33 and Xincaimian7, respectively. Further investi-gation suggested Xincaimian7 showed strong embryogenic capacity than Xinluzao33. Regenerated plants were obtained from the two cultivars within 6 months.

  3. Planeación del riego en el cultivo de algodonero (Gossypium hirsutum L., mediante un modelo de programación integral en el Distrito 075, Sinaloa, México

    Directory of Open Access Journals (Sweden)

    Ernesto Sifuentes Ibarra

    2014-01-01

    Full Text Available El cultivo de algodonero en las décadas de los 50´s y 80´s fue uno de los más importantes en los valles agrícolas del norte de Sinaloa, México desde el punto de vista económico. Sin embargo, factores como su monocultivo y problemas fitosanitarios provocaron su desaparición. Ante la necesidad de diversificar el patrón actual de cultivos sembrados en la zona, existe la posibilidad de reintroducir el cultivo, sin embargo, se carece de información actualizada sobre riegos y manejo agronómico. Con el fin de contribuir a una nueva planeación del cultivo se utilizó un modelo integral de programación de riego con el cual se estimaron la ventana de siembras y la planeación del riego a diferentes niveles de operación hidráulica. Experimentos de campo se condujeron durante el ciclo agrícola otoño-invierno 2011-2012 en tres localidades del norte de Sinaloa en los municipios de Ahome y Guasave, en cada parcela se establecieron cinco variedades en una superficie de dos hectáreas con el propósito de calibrar el modelo para posteriormente realizar una serie de simulaciones en siete fechas de siembra y estimar los requerimientos hídricos y duración del ciclo. Al final del ciclo se obtuvo una acumulación de 2400 GDA (Grados de días acumulados (100% de bellotas abiertas para condiciones locales, un requerimiento hídrico de 500 mm para el mes de Julio y 870 mm para el mes de Octubre, después de este disminuyen nuevamente las necesidades hídricas llegando a 690 mm para siembras del mes de Enero.

  4. 图位克隆法分离陆地棉Velvet绒毛基因%Isolate a Gene for Velvet Hairiness in Cotton (Gossypium hirsutum L. ) by Map-based Cloning

    Institute of Scientific and Technical Information of China (English)

    Mehboob-ur-RAHMAN; M. A. I. ALI; S. A. RANDNAWA; T. A. MALIK; K. A. MALIK; Y. ZAFAR

    2002-01-01

    @@ Cotton crop is prone to many insect pests.Finely dense pubescence (pilose/velvet hairy),one of the important elements of defense umbrella confers in built resistance against several insect pests. The present research was conducted to isolate DNA markers for velvet hairiness, which would be useful to launch mapbasedcloning.

  5. Constructing a Linkage Map of Upland Cotton(Gossypium hirsutum L.) Using RFLP, RAPD and SSR Markers%利用RFLP、SSR和RAPD标记构建陆地棉分子标记连锁图

    Institute of Scientific and Technical Information of China (English)

    左开井; 孙济中; 张献龙; 聂以春; 刘金兰; 冯纯大

    2000-01-01

    @@ Molecular marker linkage map is important for gene mapping, map-based cloni ng and molecular marker-assisted selection. In rice[1], oilseed rape[2] and corn[3], seve ral high-den sity molecular marker linkage maps were constructed and employed in mapping dise ase-resistant genes, insect-resistant genes and agronomic traits' QTLs.

  6. 利用cDNA-AFLP技术分析老化棉花种子基因差异表达%Differential Expression Analysis of Aging Cotton Seed (Gossypium hirsutum )by cDNA-AFLP

    Institute of Scientific and Technical Information of China (English)

    李驰; 卢新雄; 陈晓玲; 张志娥; 林凤

    2007-01-01

    利用cDNA-AFLP技术分析老化棉花种子的基因差异表达,根据带型可将得到的差异片段分为5个类型,分别回收、克隆7个差异片段并利用BLASTN和BLASTX程序与网上数据库(NCBI,National Center for Biotechnology Information)进行同源性分析.其中一条在对照、老化16周、28周种子共有的片段与欧洲板栗(Castanea sativa)核糖体蛋白L33和拟南芥(Arabidopsis thaliana)核糖体结构组分蛋白具有同源性;对照种子特有的一条片段与拟南芥(Arabidopsis thaliana)中氧化还原酶和水稻(Oryza sativa)2-硝基丙烷双加氧酶相关蛋白具有同源性;在老化36周种子特有的4条片段中:1条与水稻中被公认的三肽基酶Ⅱ蛋白具有同源性,而其它3条的同源序列功能不详;此外,老化16周种子特有的一条片段无明显同源序列.

  7. Physiological Response of Cotton (Gossypium hirsutum L.) Seedling to Exog-enous Salicylic Acid under Low Temperature Stress%低温胁迫下棉花幼苗对外源水杨酸的生理响应

    Institute of Scientific and Technical Information of China (English)

    辛慧慧; 李防洲; 侯振安; 冶军; 康文晶; 罗建

    2014-01-01

    Alleviating effect of exogenous salicylic acid on the cotton seedling under low temperature stress was elucidated by foliar-sprayed with different concentrations of salicylic acid. The results showed that 0.6-0.8 mmol·L-1 salicylic acid pretreatment could signiifcantly reduce the accumulation of the relative conductivity (REC) and malondialdehyde (MDA) content in the cotton seedling, which alleviated the oxidative damage of low temperature on plasma membrane. And the salicylic acid pretreatment could improve the activities of su-peroxide dismutase (SOD), peroxidase (POD), catalase (CAT), and the contents of soluble sugar, soluble pro-tein, proline to adapt to low temperature environment.%以棉花幼苗为试材,通过叶面喷施不同浓度水杨酸的处理方法,研究外源水杨酸对低温胁迫下棉花幼苗的缓解效应。结果表明,0.6~0.8 mmol·L-1水杨酸预处理可以显著降低棉花幼苗叶片相对电导率(REC)和丙二醛(MDA)的积累量,从而缓解低温对质膜的过氧化伤害,并通过提高超氧化物歧化酶(SOD)、过氧化物酶(POD)、过氧化氢酶(CAT)的活性和可溶性糖、可溶性蛋白、脯氨酸等渗透调节物质的含量来适应低温环境。

  8. Development and Application of a Transformation-competent Artificial chromosome (TAC) Genomic DNA Library in Allotetrapolid Cotton (Gossypium hirsutum L. )%陆地棉TAC基因组DNA文库的构建及利用

    Institute of Scientific and Technical Information of China (English)

    Xiao-e LIANG; Jin-feng SUO; Yong-biao XUE

    2002-01-01

    @@ The technology of cloning and transferring of large DNA fragments in plants is important for high-efficient identification of new genes and study of gene functions. Tranformationcompetent artificial chromosome (TAC) vector system has been shown to be very useful for efficient gene isolation in Arobidopsis thaliana.

  9. 陆地棉产量性状QTLs的SSR和RAPD标记作图%Mapping and Tagging the QTLs of Yield Traits (Gossypium hirsutum L. )with SSRs and RAPDs in Upland Cotton

    Institute of Scientific and Technical Information of China (English)

    Yao-ting WU; Tian-zhen ZHANG

    2002-01-01

    @@ Molecular markers provide the opportunity to identify marker-quantitative trait locus (QTL)associations in different environments and populations, and can be used to improve the efficiency of conventional plant breeding by carrying out indirect selection through molecular markers linked to the interest traits of QTL at all the stages of plant growth.

  10. Genetic Diversity in Upland Cotton(Gossypium hirsutum L. )Cultivars Based on RAPDs and SSRs%基于RAPD和SSR标记分析的陆地棉品种遗传多样性

    Institute of Scientific and Technical Information of China (English)

    Long-fu ZHU; Xian-long ZHANG; Yi-chun NIE

    2002-01-01

    @@ Quantification and classification of diversity in germplasm collection is important for both genetic researchers and plant breeders. Some advance was made in this area in the world ( Liu et al, 2000) based on SSRs and in China(Xu et al, 2001; 2002 ) based on RAPDs. In this research, 72 cultivars including 14 latest introduced and 30 Bt-transformed ones were evaluated by RAPDs and SSRs.

  11. Molecular Cloning and Expression Analysis of SVP-like Gene,GhMADS29 from Gossypium hirsutum L.%棉花SVP-like基因GhMADS29的克隆与表达分析

    Institute of Scientific and Technical Information of China (English)

    张文香; 庞朝友; 范术丽; 宋美珍; 魏恒玲; 喻树迅

    2015-01-01

    [目的]研究棉花中SVP类基因的功能.[方法]通过同源克隆的方法在陆地棉中棉所36中克隆SVP的同源基因GhMADS29,对其进行Blast搜索比对和进化树分析以及荧光定量的表达模式分析.[结果]GhMADS29与猕猴桃的SVP4基因相似度最高,其cDNA序列含有9个外显子、8个内含子,不同时期顶芽的荧光定量结果表明它在花芽分化起始期的花芽中表达量最高,且不同组织的荧光定量分析表明它在叶片和顶芽中表达量较高.[结论]首次获得棉花SVP亚族基因,命名为GhMADS29,其GeneBank登录号为JQ682642.

  12. System Optimization of Agrobacterium-mediated Transformation of Cotton(Gossypium Hirsutum L.) in Xinjiang%农杆菌介导转化新疆棉花体系的优化

    Institute of Scientific and Technical Information of China (English)

    王静; 聂祥祥; 李冠

    2013-01-01

    以新疆主栽棉花品种新陆早19号和新陆早23号下胚轴为外植体,以GUS基因为报告基因,通过检测GUS基因在转化后的棉花下胚轴中瞬时表达情况,分析了菌液浓度、浸染时间、乙酰丁香酮浓度、超声波辅助处理、共培养温度和共培养时间等因素对GUS瞬时表达的影响.实验结果表明:菌液浓度OD600=0.5,浸染时间15 min,乙酰丁香酮浓度100μmol/L,24°C共培养72 h的转化条件下GUS基因瞬时表达率最高.%The hypocotyls of Xinluzao19 and Xinluzao23 were used for the experiments.GUS gene as the report gene,the transient expression of GUS gene in the transformed hypocotyls of cotton were examined to analyze the influences of Agrobacterium density,infection time,acetosyringone (AS) concentration,sonication treatment,co-cultivation temperature and co-cultivation time on the expression of GUS gene.As the results,the optimal infection combination was Agrobacterium density at OD600=0.5 with 15 min infection.The perfect acetosyringone concentration was 100 μmol/L,the appropriate co-cultivation temperature and time were incubated at 24°C for 72 h.

  13. A strategy for designing multi-taxa specific reference gene systems. example of application--ppi phosphofructokinase (ppi-PPF) used for the detection and quantification of three taxa: maize (Zea mays), cotton (Gossypium hirsutum) and rice (Oryza sativa).

    Science.gov (United States)

    Chaouachi, Maher; Giancola, Sandra; Romaniuk, Marcel; Laval, Valérie; Bertheau, Yves; Brunel, Dominique

    2007-10-03

    In the first part of the paper, we report the description of a new strategy for the development of a plant reference gene system that can be used for genetically modified organism (GMO) analysis. On the basis of in silico research for candidate genes, the design of degenerate primers allowed the obtention of genomic sequences of the selected gene ppi-phosphofructokinase ( ppi-PPF) for nine taxa in which GMOs have been developed. The comparison and the analysis of inter- and intraspecies sequence variability were performed using a large number of species and cultivars. As an example of application following the detection of single nucleotide polymorphism, we designed specific conventional and real-time polymerase chain reaction tests for the detection and quantification of three taxa, namely, maize, cotton, and rice. This system was highly specific and sensitive. The gene copy number conservation among different cultivars was analyzed and confirmed with a sequencing step. This reference gene system is adequate for use in routine assays for the quantification of GMOs. We then explain briefly the constraints faced and propose recommendations when designing a reference gene system depending on the species to be targeted.

  14. Fiber biology

    Science.gov (United States)

    Cotton fiber cells arising from seed epidermis is the most important agricultural textile commodity in the world. To produce fully mature fibers, approximately two months of fiber developmental process are required. The timing of four distinctive fiber development stages consisting of initiation, ...

  15. Fine mapping of the dominant glandless Gene Gle2 in Sea-island cotton (Gossypium barbadense L.)

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Gle2 is a mutant gene that controls glandless trait in cotton plants and seeds. It is an important gene resource to gossypol-free cottonseed breeding. The objective of this research was to develop SSR markers tightly linked with Gle2 by using the F2 segregating population containing 1599 plants derived from the cross of G. hirsutum genetic standard line TM-1 and G. barbadense glandless mutant line Hai-1. Genetic analysis suggested that the Gle2 was an incomplete dominant gene. Based on the backbone of genetic linkage map from G. hirsutum × G. barbadense BC1 published by our laboratory, Gle2 was located between CIR362 and NAU2251b, NAU3860b, STV033, with a genetic distance 9.27 and 0.96 cM, respectively. This result is useful for cloning Gle2 gene by map-based cloning method.

  16. Morphology and Metal Binding Characteristics of a Natural Polymer—Kondagogu (Cochlospermum gossypium Gum

    Directory of Open Access Journals (Sweden)

    R. B. Sashidhar

    2013-07-01

    Full Text Available Kondagogu (Cochlospermum gossypium gum (KG, a natural tree exudate, was investigated for its morphological, adsorption and metal interaction behavior with various toxic heavy metals (Pb, Cd, Ni, Cr and Fe. SEM, AFM and TEM techniques were used to study the morphological changes occurring after metal adsorption onto the biopolymer structure. The degree of biosorption of metals on KG biopolymer surfaces was assessed by small-angle X-ray scattering analysis. EDXA spectrum revealed that the ion-exchange mechanism plays a major role in the binding process between KG and metal ions. The higher electron density observed in the KG-Cd complex suggests that Cd is strongly bound to KG compared to the other metals. This work provides a potential platform for developing a hydrocolloid-based nanogel for bioremediation of environmental contaminants.

  17. Genetic Diversity of Landraces in Gossypium arboreum L. Race sinense Assessed with Simple Sequence Repeat Markers

    Institute of Scientific and Technical Information of China (English)

    Wang-Zhen Guo; Bao-Liang Zhou; Lu-Ming Yang; Wei Wang; Tian-Zhen Zhang

    2006-01-01

    Asiatic cotton (Gossypium arboreum L.) is an "Old World" cultivated cotton species, the sinense race of which is planted extensively in China. This species is still used in the current tetraploid cotton breeding program as an elite germplasm line, and is also used as a model for genomic research in Gossypium. In the present study, 60 cotton microsatellite markers, averaging 4.6 markers for each A-genome chromosome,were chosen to assess the genetic diversity of 109 accessions. These included 106 G. arboreum landraces,collected from 18 provinces throughout four Asiatic cotton-growing regions in China. A total of 128 alleles were detected, with an average of 2.13 alleles per locus. The largest number of alleles, as well as the maximum number of polymorphic loci, was detected in the A03 linkage group. No polymorphic alleles were detected on chromosome 10. The polymorphism information content for the 22 polymorphic microsatellite loci varied from 0.52 to 0.98, with an average of 0.89. Genetic diversity analysis revealed that the landraces in the Southern region had more genetic variability than those from the other two regions, and no significant difference was detected between landraces in the Yangtze and the Yellow River Valley regions. These findings are consistent with the history of sinense introduction, with the Southern region being the presumed center of origin for Chinese Asiatic cotton, and with subsequent northeastward extension to the Yangtze and Yellow River Valleys. Cluster analysis, based on simple sequence repeat data for 60 microsatellite loci, clearly differentiated Vietnamese and G. herbaceum landraces from the sinense landrace. No relationship between inter-variety similarity and geographical ecological region was observed. The present findings indicate that the Southern region landraces may have been directly introduced into the provinces in the middle and lower Yangtze River Valley, where Asiatic cotton was most extensively grown, and further race

  18. Analysis of the Cotton E6 Promoter

    Institute of Scientific and Technical Information of China (English)

    WU Aimin; LIU Jinyuan

    2005-01-01

    An E6 gene from sea island cotton (Gossypium barbadense) was expressed specifically in cotton fiber cells to transfer functions to cultivated species for better transgenic engineering. The regulatory activity of the E6 promoter region was then studied by isolating a 614-bp fragment of the 5'-flanking region from upland cotton (Gossypium hirsutum CRI-12) to produce a green fluorescent protein (GFP) reporter construct for analysis of tissue-specific expression in transgenic tobacco seedlings. Fluorescent analyses indicate that the relatively short E6 promoter is sufficient to direct green fluorescent protein expression specifically in the leaf trichomes (hair cells) of the transgenic tobacco plants. As cotton fibers are also unicellular trichomes that differentiate from epidermal cells of developing cotton ovules, the result suggests that the relatively short E6 promoter can serve as a fiber-specific expression promoter for genetic engineering to improve cotton fiber quality.

  19. Changes in the sugar composition and molecular mass distribution of matrix polysaccharides during cotton fiber development.

    Science.gov (United States)

    Tokumoto, Hayato; Wakabayashi, Kazuyuki; Kamisaka, Seiichiro; Hoson, Takayuki

    2002-04-01

    Cotton (Gossypium herbaceum L.) fiber development consists of a fiber elongation stage (up to 20 d post-anthesis) and a subsequent cell wall thickening stage. Cell wall analysis revealed that the extractable matrix (pectic and hemicellulosic) polysaccharides accounted for 30-50% of total sugar content in the fiber elongation stage but less than 3% in the cell wall thickening stage. By contrast, cellulose increased dramatically after the fiber elongation ceased. The amounts of extractable xyloglucans and arabinose- and galactose-containing polymers per seed increased in the early fiber elongation stage and decreased thereafter. The amounts of extractable acidic polymers and non-cellulosic beta-glucans (mainly composed of beta-1,3-glucans) increased in parallel with fiber elongation and then decreased. The molecular masses of extractable non-cellulosic beta-glucans, and arabinose- and galactose-containing polymers decreased during both fiber elongation and cell wall thickening stages. The molecular mass of extractable xyloglucans also decreased during the fiber elongation stage, but this decrease ceased during the cell wall thickening stage. Conversely, the molecular size of acidic polymers in the extractable pectic fraction increased during both stages. Thus, not only the amounts but also the molecular size of the extractable matrix polysaccharides showed substantial changes during cotton fiber development.

  20. Comportamento do algodoeiro herbáceo (Gossypium hirsutum latifolium Hutch. e controle de plantas daninhas com o uso dos herbicidas diuron e sethoxydim The behavior of upland-type cotton (G. hirsutum latifolium Hutch. and the control of weeds after the use of diuron and sethoxydim herbicides

    Directory of Open Access Journals (Sweden)

    N.E. de M. Beltrão

    1983-06-01

    Full Text Available Com a finalidade de verificar o comportamento do algodoeiro herbáceo, cultivar IAC-17, bem como o controle de plantas daninhas e aspectos competitivos do complexo floristico infestante sobre a cultura, na presença dos herbicidas diuron e sethoxydim, foi realizado um ensaio no município de Viçosa, Minas Gerais. O solo do local experimental, Podzólico Vermelho-Amarelo, apresenta textura argilosa, com 1,38% de carbono orgânico e de baixa fertilidade natural. O diuron foi aplicado em pré-emergência nas doses de 0,0; 0,8; 1,6 e 2,4 kg/ha e o sethoxydim, em pós-emergência, nas doses de 0, 150, 300, 450 e 600 g/ha. O ensaio foi instalado em blocos ao acaso, com 21 tratamentos em esquema fatorial (4 x 5 + 1, sendo 20 deles envolvendo o controle químico, resultantes de todas as combinações das doses desses herbicidas e uma testemunha relativa onde o controle foi realizado com o uso da enxada. Avaliaram-se várias características do crescimento e desen vol vimento da cul tura, tai s como área fol iar, índice de área folia r, ren dimento de algodão em rama, altura da plant a, diâmetro do caule etc.; e, por meio de mét odos sin ecológico s, a densidade populac ional e peso da fitomassa hidratada epí gea das esp éci es daninhas dominant es, e o total de todas as espécies. O diuron exerceu um elevado contro le de lat ifo liadas, como botão-de -ouro (Galin soga parvif lora Cav. e picão-preto (Biden spilosa L., nas doses de 1,6 e 2,4 kg/ ha. O sethoxydim mesmo na menor dose testada (150 g/h a controlou totalmente o capim-marmelada (Brachiaria planta ginea (Link. Hitch . Nenhum dos herbicidas controlou a falsa -serralha (Emilia sonc hi folia DC., porém referida planta daninha não reduziu o crescimento da cultura, mostrando- se de baixa força de competição. As plantas daninhas que apresentaram maiores forças de competição foram o botão-de-ouro, por apresentar maior densidade populacional, e o capim-marmelada, por ser de maior agressividade.To verify the behavior of the c. IAC -17, as well as, the control of weeds and competitive aspects of the infesting floristic complexes over the cotton culture under the presence of the herbicides, diuron and sethoxydium, atrial was contucted in Viçosa, Minas Gerais. The soil at the experimental site, Podzolic Red-yellow, had a clay texture wi th 1,38% of organic carbon an low natural fertility. Diuron was applied at pre -emergence time at the rates of 0, 0; 0, 8; 1,6 and 2,4 kg a.i. /ha and sethoxyd im at post-emergence at the rates of 0, 150, 300, 450 and 600 g a.i./ha. The trial was setup in a randomized blocks design with 2 1 treament sunder a factorial scheme (x 5 + 1 . Out of them, 20 composed all the combinations with different dosis of the two herbicides under study plus a relative control weeded with the aind of a mattock. Several traits concerning growth and plant development were evaluated, such as leaf area, leaf area in dex, seed -cotton yield, plant height, stem diameter. By means of syn ecological methods, th e population density, hydrated epigeous phytomase of dominant weed species, and the total of all species were evaluated. Diuron exerted a high control overlati foliates such as Galinsoga parviflora Cav . and Bidens pilosa L., at the rates of 1, 6 an d 2,4 kg a. i. /ha, seth oxydim, even using the lowvest tested rate (150 g. a. i. /h a fully controled Brachiaria plantaginea (Link. Hitch. None of th e herbicides was able to control Emilia sonchifolia DC. Th is species although being considered an important weed did not affect the normal crop development because of its low competition ability. The weeds showing highes trates of competition were G. parviflora (due to high population density an d B. plantaginea, because of its greater aggresivity.

  1. Decay of oak Wood provoked by fungus Stereum hirsutum (Willd. ex Fr. S. F. Gray. and its' essential physiological requirements

    Directory of Open Access Journals (Sweden)

    Mirić Milenko

    2005-01-01

    Full Text Available White rot fungi usually decompose cell walls of attacked wood destroying tissue elements (i.e. parenchyma cells, wood fibres, tension wood, tracheas etc in different amount, depending to wood-species as well as to its' zones. Different fungi secrete specific enzymes that are responsible for certain damages. As consequence, the wood structure use to be significantly and unfixable decomposed and changed. Microscopical analyses that have been run provided clear and indicative information relating to effects of fungal activity on wood tissue. Physiological requirements of fungi are for shore of the highest importance in understanding of mechanism of decaying process in the wood. The most important factors as like temperature and concentration of H ions, as well as main nutrients as sources of carbon, nitrogen and phosphorus can affect the behaviour of wood decaying fungi. The impacts of these factors on the growth and production on mycelial mass of Stereum hirsutum (Willd. ex Fr. S.F. Gray., have been investigated. This fungus is one of the most frequent appearing on the Sessile- and Pedunculate Oak weakened trees or felled logs, behaving as parasite as well as saprophyte. As a causer of Oak sapwood white rot S. hirsutum causes significant damages of wood at forest- as well as at industrial storages.

  2. Dicty_cDB: FC-AM16 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available one GA__Eb0002H01f, mRNA sequence. 46 0.39 1 AJ513597 |AJ513597.1 Gossypium hirsutum EST, clone suo25h09r3. ...46 0.39 1 AJ513558 |AJ513558.1 Gossypium hirsutum EST, clone suo25e05r3. 46 0.39

  3. Dicty_cDB: SSI121 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available one:Av3161. 52 0.007 1 AJ513558 |AJ513558.1 Gossypium hirsutum EST, clone suo25e05r3. 46 0.43 1 BF268648 |BF...1f, mRNA sequence. 46 0.43 1 AJ513597 |AJ513597.1 Gossypium hirsutum EST, clone suo2

  4. Dicty_cDB: Contig-U12551-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available EST1071575 GH_TMO Gossypium hirsutum cDNA, mRNA s... 38 0.034 3 ( DJ303230 ) Method for identification of useful...9112 ) EST1079752 GH_TMO Gossypium hirsutum cDNA, mRNA s... 44 0.22 4 ( DJ303027 ) Method for identification of useful

  5. Dietary Fiber

    Science.gov (United States)

    Fiber is a substance in plants. Dietary fiber is the kind you eat. It's a type of carbohydrate. You may also see it listed on a food label as soluble ... types have important health benefits. Good sources of dietary fiber include Whole grains Nuts and seeds Fruit and ...

  6. Fiber Amplifiers

    DEFF Research Database (Denmark)

    Rottwitt, Karsten

    2017-01-01

    The chapter provides a discussion of optical fiber amplifiers and through three sections provides a detailed treatment of three types of optical fiber amplifiers, erbium doped fiber amplifiers (EDFA), Raman amplifiers, and parametric amplifiers. Each section comprises the fundamentals including t...

  7. Water Fibers

    CERN Document Server

    Douvidzon, Mark L; Martin, Leopoldo L; Carmon, Tal

    2016-01-01

    Fibers constitute the backbone of modern communication and are used in laser surgeries; fibers also genarate coherent X-ray, guided-sound and supercontinuum. In contrast, fibers for capillary oscillations, which are unique to liquids, were rarely considered in optofluidics. Here we fabricate fibers by water bridging an optical tapered-coupler to a microlensed coupler. Our water fibers are held in air and their length can be longer than a millimeter. These hybrid fibers co-confine two important oscillations in nature: capillary- and electromagnetic-. We optically record vibrations in the water fiber, including an audio-rate fundamental and its 3 overtones in a harmonic series, that one can hear in soundtracks attached. Transforming Micro-Electro-Mechanical-Systems [MEMS] to Micro-Electro-Capillary-Systems [MECS], boosts the device softness by a million to accordingly improve its response to minute forces. Furthermore, MECS are compatible with water, which is a most important liquid in our world.

  8. Inheritance of the delayed gland morphogenesis trait in Australian wild species of Gossypium

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Five Australian wild cotton species with the delayed gland morphogenesis trait, as well as G. arboreum, G. davidsonii and four different gland genotypes of G. hirsutum, Gl2Gl2Gl3Gl3, Gl2Gl2gl3gl3, gl2gl2Gl3Gl3, and gl2gl2gl3gl3, were used in this experiment and 10 interspecific hybrids were obtained by the crossing among them. According to the gland expression on the seeds and plants of the interspecific hybrids, the inheritance of the delayed gland morphogenesis trait of Australian wild cotton species was opened out as follows: (ⅰ) the inheritance of the delayed gland morpho-genesis trait was almost the same among the 5 Australian wild cotton species, and the gene or genes which controlled this trait may be located in the same loci. (ⅱ) The glandless seed trait of the Australian wild cotton species was dominant over the glanded seed trait of G. arboreum, a genome A spe-cies, and the seeds of interspecific hybrid F1 between them were glandless. However, it was recessive over the glanded character of genome D species, G.davidsonii, and their F1 was a typical glanded one. (ⅲ) The glandless seed trait of the Australian wild cotton species was recessive or incomplete dominant over the glanded cotton but dominant over the glandless cotton of G. hirsutum, and the glandless genes (gl2gl2gl3gl3) of upland cotton had great weakening effect on the glanded plant trait of the Australian wild cotton species on the other hand. For the two main glanded genes of upland cotton, the delayed gland morphogenesis trait of the Austra-lian wild cotton species was dominant epistatic over glandless genes, gl2gl2gl3gl3, and one of the glanded genes, Gl2Gl2, but was recessive epistatic over the other glanded gene, Gl3Gl3. Therefore, it is much convenient to use Gl2Gl2gl3gl3 as the upland cotton parent in the interspecific hybridization and backcrossing afterward, in order to produce the upland cotton germplasm with glandless seeds and glanded plant trait.

  9. Comparative transcriptomic analysis of roots of contrasting Gossypium herbaceum genotypes revealing adaptation to drought

    Directory of Open Access Journals (Sweden)

    Ranjan Alok

    2012-11-01

    Full Text Available Abstract Background Root length and its architecture govern the adaptability of plants to various stress conditions, including drought stress. Genetic variations in root growth, length, and architecture are genotypes dependent. In this study, we compared the drought-induced transcriptome of four genotypes of Gossypium herbaceum that differed in their drought tolerance adaptability. Three different methodologies, namely, microarray, pyrosequencing, and qRT–PCR, were used for transcriptome analysis and validation. Results The variations in root length and growth were found among four genotypes of G.herbaceum when exposed to mannitol-induced osmotic stress. Under osmotic stress, the drought tolerant genotypes Vagad and GujCot-21 showed a longer root length than did by drought sensitive RAHS-14 and RAHS-IPS-187. Further, the gene expression patterns in the root tissue of all genotypes were analyzed. We obtained a total of 794 differentially expressed genes by microarray and 104928 high-quality reads representing 53195 unigenes from the root transcriptome. The Vagad and GujCot-21 respond to water stress by inducing various genes and pathways such as response to stresses, response to water deprivation, and flavonoid pathways. Some key regulatory genes involved in abiotic stress such as AP2 EREBP, MYB, WRKY, ERF, ERD9, and LEA were highly expressed in Vagad and GujCot-21. The genes RHD3, NAP1, LBD, and transcription factor WRKY75, known for root development under various stress conditions, were expressed specifically in Vagad and GujCot-21. The genes related to peroxidases, transporters, cell wall-modifying enzymes, and compatible solutes (amino acids, amino sugars, betaine, sugars, or sugar alcohols were also highly expressed in Vagad and Gujcot-21. Conclusion Our analysis highlights changes in the expression pattern of genes and depicts a small but highly specific set of drought responsive genes induced in response to drought stress. Some of these

  10. QTL Analysis in Tetraploid Cotton

    Institute of Scientific and Technical Information of China (English)

    LIN Zhong-xu; HE Dao-hua; WANG Hong-mei

    2008-01-01

    @@ QTL analyses were performed in tetraploid cotton.An interspecific F2population consisting of 69 plants,which was developed from the cross between Gossypium hirsutum L.,cv.Handan 208 (characterized as high fiber yield) and G.barbadense L.,cv.Pima 90 (characterized as excellent fiber quality),was genotyped with SSR,RAPD,SRAP,and REMAP markers.A 1029-1ocus linkage map was constructed covering 5472.3 cM with an average distance of 5.32 cM between two markers.

  11. 一种适合于cDNA文库构建的高质量棉花RNA的简单抽提法%An Improved Simple Protocol for Isolation of High Quality RNA from Gossypium spp. Suitable for cDNA Library Construction

    Institute of Scientific and Technical Information of China (English)

    朱龙付; 涂礼莉; 曾范昌; 刘迪秋; 张献龙

    2005-01-01

    @@ Due to the large amounts of polyphenolics and polysaccharides, the extraction of high quality biochemical molecules like RNA and DNA is always an obstacle to the molecular biology study of cotton. The conventional RNA extraction methods and commercial kits always failed to get high quality RNA or even nothing. Perfect RNA was extracted from embryogenic callus in cotton using Trizol (Invitrogen, #15596-026) but failed to other tissues in this study. Here a modified simple protocol was described using guanidinium thiocyanate to extract high quality RNA from cotton with low cost, easily handling and time-saving. The steps included extracting of RNA by guanidinium thiocyanate, removing proteins and other impurities by chloroform-isoamylalcohol without phenol; after precipitation and resuspension of RNA, phenol / chloroform-isoamylalcohol were utilized to purify the RNA. This method was applied to RNA isolation from leaves, roots, hypocotyls, fibers, whole seedlings and callus in Gossypium spp. effectively.

  12. Biotransformation of (-)-α-Pinene by Whole Cells of White Rot Fungi, Ceriporia sp. ZLY-2010 and Stereum hirsutum.

    Science.gov (United States)

    Lee, Su-Yeon; Kim, Seon-Hong; Hong, Chang-Young; Kim, Ho-Young; Ryu, Sun-Hwa; Choi, In-Gyu

    2015-09-01

    Two white rot fungi, Ceriporia sp. ZLY-2010 (CER) and Stereum hirsutum (STH) were used as biocatalysts for the biotransformation of (-)-α-pinene. After 96 hr, CER converted the bicyclic monoterpene hydrocarbon (-)-α-pinene into α-terpineol (yield, 0.05 g/L), a monocyclic monoterpene alcohol, in addition to, other minor products. Using STH, verbenone was identified as the major biotransformed product, and minor products were myrtenol, camphor, and isopinocarveol. We did not observe any inhibitory effects of substrate or transformed products on mycelial growth of the fungi. The activities of fungal manganese-dependent peroxidase and laccase were monitored for 15 days to determine the enzymatic pathways related to the biotransformation of (-)-α-pinene. We concluded that a complex of enzymes, including intra- and extracellular enzymes, were involved in terpenoid biotransformation by white rot fungi.

  13. Genetic diversity of sea-island cotton (Gossypium barbadense) revealed by mapped SSRs.

    Science.gov (United States)

    Wang, X Q; Feng, C H; Lin, Z X; Zhang, X L

    2011-12-08

    In order to evaluate the genetic diversity of sea-island cotton (Gossypium barbadense), 237 commonly mapped SSR markers covering the cotton genome were used to genotype 56 sea-island cotton accessions. A total of 218 polymorphic primer pairs (91.98%) amplified 361 loci, with a mean of 1.66 loci. Polymorphism information content values of the SSR primers ranged from 0.035 to 0.862, with a mean of 0.320. The highest mean polymorphism information content value for the SSR motifs was from a compound motif (0.402), and for the chromosomes it was Chr10 (0.589); the highest ratio of polymorphic primers in Xinjiang accessions was from Chr21 (83.33%). Genetic diversity was high in Xinjiang accessions. AMOVA showed that variation was 8 and 92% among populations and within populations, respectively. The 56 sea-island accessions were divided into three groups in the UPGMA dendrogram: Xinhai5 was in the first group; accessions from Xinjiang, except the five main ones, were in the second group, and the other 34 accessions were in the third group. Accessions from the former Soviet Union and Xinjiang main accessions were closely related. Both PCA and UPGMA confirmed that Xinhai5 was distinct from the other accessions, and accessions from Xinjiang were in an independent group. Given the differences between principal components analysis and UPGMA results, it is necessary to combine molecular markers and pedigree information so that genetic diversity can be objectively analyzed.

  14. Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado.

    Science.gov (United States)

    Jung, Sook; Lee, Taein; Ficklin, Stephen; Yu, Jing; Cheng, Chun-Huai; Main, Dorrie

    2016-01-01

    The Genome Database for Rosaceae (GDR) and CottonGen are comprehensive online data repositories that provide access to integrated genomic, genetic and breeding data through search, visualization and analysis tools for Rosaceae crops and Gossypium (cotton). These online databases use Chado, an open-source, generic and ontology-driven database schema for biological data, as the primary data storage platform. Chado is highly normalized and uses ontologies to indicate the 'types' of data. Therefore, Chado is flexible such that it has been used to house genomic, genetic and breeding data for GDR and CottonGen. These data include whole genome sequence and annotation, transcripts, molecular markers, genetic maps, Quantitative Trait Loci, Mendelian Trait Loci, traits, germplasm, pedigrees, large scale phenotypic and genotypic data, ontologies and publications. We provide information about how to store these types of data in Chado using GDR and CottonGen as examples sites that were converted from an older legacy infrastructure. Database URL: GDR (www.rosaceae.org), CottonGen (www.cottongen.org).

  15. Comparative Proteomic Analysis of Gossypium thurberi in Response to Verticillium dahliae Inoculation

    Directory of Open Access Journals (Sweden)

    Weiping Fang

    2015-10-01

    Full Text Available Verticillium wilt is threatening cotton productivity globally. This disease is caused by soil-borne Verticillium dahliae which directly infects cotton roots, and exclusively colonizes and occludes xylem vessels, finally resulting in necrosis, defoliation, and most severely, plant death. For the first time, iTRAQ (isobaric tags for relative and absolute quantification was applied to screen the differentially expressed proteins of Gossypium thurberi inoculated with V. dahliae. A total of 6533 proteins were identified from the roots of G. thurberi after inoculation with V. dahliae, and 396 showed up- and 279 down-regulated in comparison to a mock-inoculated roots. Of these identified proteins, the main functional groups were those involved in cell wall organization and reinforcement, disease-resistant chemicals of secondary metabolism, phytohormone signaling, pathogenesis-related proteins, and disease-resistant proteins. Physiological and biochemical analysis showed that peroxidase activity, which promotes the biosynthesis and accumulation of lignin, was induced early in the hypocotyl after inoculation with V. dahliae. Similarly, salicylic acid also accumulated significantly in hypocotyl of the seedlings after inoculation. These findings provide an important knowledge of the molecular events and regulatory networks occurring during G. thurberi-V. dahliae interaction, which may provide a foundation for breeding disease-resistance in cotton.

  16. Genome-wide identification and expression analysis of TCP transcription factors in Gossypium raimondii.

    Science.gov (United States)

    Ma, Jun; Wang, Qinglian; Sun, Runrun; Xie, Fuliang; Jones, Don C; Zhang, Baohong

    2014-10-16

    Plant-specific TEOSINTE-BRANCHED1/CYCLOIDEA/PCF (TCP) transcription factors play versatile functions in multiple aspects of plant growth and development. However, no systematical study has been performed in cotton. In this study, we performed for the first time the genome-wide identification and expression analysis of the TCP transcription factor family in Gossypium raimondii. A total of 38 non-redundant cotton TCP encoding genes were identified. The TCP transcription factors were divided into eleven subgroups based on phylogenetic analysis. Most TCP genes within the same subfamily demonstrated similar exon and intron organization and the motif structures were highly conserved among the subfamilies. Additionally, the chromosomal distribution pattern revealed that TCP genes were unevenly distributed across 11 out of the 13 chromosomes; segmental duplication is a predominant duplication event for TCP genes and the major contributor to the expansion of TCP gene family in G. raimondii. Moreover, the expression profiles of TCP genes shed light on their functional divergence.

  17. Study on the Mitochondrial Genome of Sea Island Cotton (Gossypium barbadense) by BAC Library Screening

    Institute of Scientific and Technical Information of China (English)

    SU Ai-guo; LI Shuang-shuang; LIU Guo-zheng; LEI Bin-bin; KANG Ding-ming; LI Zhao-hu; MA Zhi-ying; HUA Jin-ping

    2014-01-01

    The plant mitochondrial genome displays complex features, particularly in terms of cytoplasmic male sterility (CMS). Therefore, research on the cotton mitochondrial genome may provide important information for analyzing genome evolution and exploring the molecular mechanism of CMS. In this paper, we present a preliminary study on the mitochondrial genome of sea island cotton (Gossypium barbadense) based on positive clones from the bacterial artiifcial chromosome (BAC) library. Thirty-ifve primers designed with the conserved sequences of functional genes and exons of mitochondria were used to screen positive clones in the genome library of the sea island cotton variety called Pima 90-53. Ten BAC clones were obtained and veriifed for further study. A contig was obtained based on six overlapping clones and subsequently laid out primarily on the mitochondrial genome. One BAC clone, clone 6 harbored with the inserter of approximate 115 kb mtDNA sequence, in which more than 10 primers fragments could be ampliifed, was sequenced and assembled using the Solexa strategy. Fifteen mitochondrial functional genes were revealed in clone 6 by gene annotation. The characteristics of the syntenic gene/exon of the sequences and RNA editing were preliminarily predicted.

  18. Development and characterization of genomic and expressed SSRs for levant cotton (Gossypium herbaceum L.).

    Science.gov (United States)

    Jena, Satya Narayan; Srivastava, Anukool; Rai, Krishan Mohan; Ranjan, Alok; Singh, Sunil K; Nisar, Tarannum; Srivastava, Meenal; Bag, Sumit K; Mantri, Shrikant; Asif, Mehar Hasan; Yadav, Hemant Kumar; Tuli, Rakesh; Sawant, Samir V

    2012-02-01

    Four microsatellite-enriched genomic libraries for CA(15), GA(15), AAG(8) and ATG(8) repeats and transcriptome sequences of five cDNA libraries of Gossypium herbaceum were explored to develop simple sequence repeat (SSR) markers. A total of 428 unique clones from repeat enriched genomic libraries were mined for 584 genomic SSRs (gSSRs). In addition, 99,780 unigenes from transcriptome sequencing were explored for 8,900 SSR containing sequences with 12,471 expressed SSRs. The present study adds 1,970 expressed SSRs and 263 gSSRs to the public domain for the use of genetic studies of cotton. When 150 gSSRs and 50 expressed SSRs were tested on a panel of four species of cotton, 68 gSSRs and 12 expressed SSRs revealed polymorphism. These 200 SSRs were further deployed on 15 genotypes of levant cotton for the genetic diversity assessment. This is the first report on the successful use of repeat enriched genomic library and expressed sequence database for microsatellite markers development in G. herbaceum.

  19. SNP Marker Discovery in Pima Cotton (Gossypium barbadense L.) Leaf Transcriptomes

    Science.gov (United States)

    Kottapalli, Pratibha; Ulloa, Mauricio; Kottapalli, Kameswara Rao; Payton, Paxton; Burke, John

    2016-01-01

    The objective of this study was to explore the known narrow genetic diversity and discover single-nucleotide polymorphic (SNP) markers for marker-assisted breeding within Pima cotton (Gossypium barbadense L.) leaf transcriptomes. cDNA from 25-day plants of three diverse cotton genotypes [Pima S6 (PS6), Pima S7 (PS7), and Pima 3-79 (P3-79)] was sequenced on Illumina sequencing platform. A total of 28.9 million reads (average read length of 138 bp) were generated by sequencing cDNA libraries of these three genotypes. The de novo assembly of reads generated transcriptome sets of 26,369 contigs for PS6, 25,870 contigs for PS7, and 24,796 contigs for P3-79. A Pima leaf reference transcriptome was generated consisting of 42,695 contigs. More than 10,000 single-nucleotide polymorphisms (SNPs) were identified between the genotypes, with 100% SNP frequency and a minimum of eight sequencing reads. The most prevalent SNP substitutions were C—T and A—G in these cotton genotypes. The putative SNPs identified can be utilized for characterizing genetic diversity, genotyping, and eventually in Pima cotton breeding through marker-assisted selection.

  20. Diode Pumped Fiber Laser.

    Science.gov (United States)

    1984-12-01

    FIBER LASERS I. Nd:YAG FIBER LASER FABRICATION .............. 5 A. FIBER GROWTH .......................... 5 B. FIBER PROCESSING 7...1.32 pm FIBER LASERS I. Nd:YAG FIBER LASER FABRICATION A. FIBER GROWTH The single crystal fibers used in this work were grown at Stanford University

  1. De novo transcriptome sequencing and comparative analysis of differentially expressed genes in Gossypium aridum under salt stress.

    Science.gov (United States)

    Xu, Peng; Liu, Zhangwei; Fan, Xinqi; Gao, Jin; Zhang, Xia; Zhang, Xianggui; Shen, Xinlian

    2013-08-01

    Salinity stress is one of the most serious factors that impede the growth and development of various crops. Wild Gossypium species, which are remarkably tolerant to salt water immersion, are valuable resources for understanding salt tolerance mechanisms of Gossypium and improving salinity resistance in upland cotton. To generate a broad survey of genes with altered expression during various stages of salt stress, a mixed RNA sample was prepared from the roots and leaves of Gossypium aridum plants subjected to salt stress. The transcripts were sequenced using the Illumina sequencing platform. After cleaning and quality checks, approximately 41.5 million clean reads were obtained. Finally, these reads were eventually assembled into 98,989 unigenes with a mean size of 452 bp. All unigenes were compared to known cluster of orthologous groups (COG) sequences to predict and classify the possible functions of these genes, which were classified into at least 25 molecular families. Variations in gene expression were then examined after exposing the plants to 200 mM NaCl for 3, 12, 72 or 144 h. Sequencing depths of approximately six million raw tags were achieved for each of the five stages of salt stress. There were 2634 (1513 up-regulated/1121 down-regulated), 2449 (1586 up-regulated/863 down-regulated), 2271 (946 up-regulated/1325 down-regulated) and 3352 (933 up-regulated/2419 down-regulated) genes that were differentially expressed after exposure to NaCl for 3, 12, 72 and 144 h, respectively. Digital gene expression analysis indicated that pathways involved in "transport", "response to hormone stimulus" and "signaling" play important roles during salt stress, while genes involved in "protein kinase activity" and "transporter activity" undergo major changes in expression during early and later stages of salt stress, respectively.

  2. Two Fiber Optical Fiber Thermometry

    Science.gov (United States)

    Jones, Mathew R.; Farmer, Jeffery T.; Breeding, Shawn P.

    2000-01-01

    An optical fiber thermometer consists of an optical fiber whose sensing tip is given a metallic coating. The sensing tip of the fiber is essentially an isothermal cavity, so the emission from this cavity will be approximately equal to the emission from a blackbody. Temperature readings are obtained by measuring the spectral radiative heat flux at the end of the fiber at two wavelengths. The ratio of these measurements and Planck's Law are used to infer the temperature at the sensing tip. Optical fiber thermometers have high accuracy, excellent long-term stability and are immune to electromagnetic interference. In addition, they can be operated for extended periods without requiring re-calibration. For these reasons. it is desirable to use optical fiber thermometers in environments such as the International Space Station. However, it has recently been shown that temperature readings are corrupted by emission from the fiber when extended portions of the probe are exposed to elevated temperatures. This paper will describe several ways in which the reading from a second fiber can be used to correct the corrupted temperature measurements. The accuracy and sensitivity to measurement uncertainty will be presented for each method.

  3. Vacuum fiber-fiber coupler

    Science.gov (United States)

    Heinrici, Axel; Bjelajac, Goran; Jonkers, Jeroen; Jakobs, Stefan; Olschok, Simon; Reisgen, Uwe

    2017-02-01

    Research and development carried out by the ISF Welding and Joining Institute of RWTH Aachen University has proven that combining high power laser and low vacuum atmosphere provides a welding performance and quality, which is comparable to electron beam welding. The developed welding machines are still using a beam forming which takes place outside the vacuum and the focusing laser beam has to be introduced to the vacuum via a suitable window. This inflexible design spoils much of the flexibility of modern laser welding. With the target to bring a compact, lightweight flying optics with flexible laser transport fibers into vacuum chambers, a high power fiber-fiber coupler has been adapted by II-VI HIGHYAG that includes a reliable vacuum interface. The vacuum-fiber-fiber coupler (V-FFC) is tested with up to 16 kW sustained laser power and the design is flexible in terms of a wide variety of laser fiber plug systems and vacuum flanges. All that is needed to implement the V-FFC towards an existing or planned vacuum chamber is an aperture of at least 100 mm (4 inch) diameter with any type of vacuum or pressure flange. The V-FFC has a state-of-the-art safety interface which allows for fast fiber breakage detection for both fibers (as supported by fibers) by electric wire breakage and short circuit detection. Moreover, the System also provides connectors for cooling and electric signals for the laser beam optics inside the vacuum. The V-FFC has all necessary adjustment options for coupling the laser radiation to the receiving fiber.

  4. Genetic diversity analysis of Gossypium arboreum germplasm accessions using genotyping-by-sequencing.

    Science.gov (United States)

    Li, Ruijuan; Erpelding, John E

    2016-10-01

    The diploid cotton species Gossypium arboreum possesses many favorable agronomic traits such as drought tolerance and disease resistance, which can be utilized in the development of improved upland cotton cultivars. The USDA National Plant Germplasm System maintains more than 1600 G. arboreum accessions. Little information is available on the genetic diversity of the collection thereby limiting the utilization of this cotton species. The genetic diversity and population structure of the G. arboreum germplasm collection were assessed by genotyping-by-sequencing of 375 accessions. Using genome-wide single nucleotide polymorphism sequence data, two major clusters were inferred with 302 accessions in Cluster 1, 64 accessions in Cluster 2, and nine accessions unassigned due to their nearly equal membership to each cluster. These two clusters were further evaluated independently resulting in the identification of two sub-clusters for the 302 Cluster 1 accessions and three sub-clusters for the 64 Cluster 2 accessions. Low to moderate genetic diversity between clusters and sub-clusters were observed indicating a narrow genetic base. Cluster 2 accessions were more genetically diverse and the majority of the accessions in this cluster were landraces. In contrast, Cluster 1 is composed of varieties or breeding lines more recently added to the collection. The majority of the accessions had kinship values ranging from 0.6 to 0.8. Eight pairs of accessions were identified as potential redundancies due to their high kinship relatedness. The genetic diversity and genotype data from this study are essential to enhance germplasm utilization to identify genetically diverse accessions for the detection of quantitative trait loci associated with important traits that would benefit upland cotton improvement.

  5. Molecular cloning and characterization of enhanced disease susceptibility 1 (EDS1) from Gossypium barbadense.

    Science.gov (United States)

    Su, Xiaofeng; Qi, Xiliang; Cheng, Hongmei

    2014-06-01

    Arabidopsis enhanced disease susceptibility 1 (EDS1) plays an important role in plant defense against biotrophic and necrotrophic pathogens. The necrotrophic pathogen Verticillium dahliae infection of Gossypium barbadense could lead to Verticillium wilt which seriously reduces the cotton production. Here, we cloned and characterized a G. barbadense homolog of EDS1, designated as GbEDS1. The full-length cDNA of the GbEDS1 gene was obtained by the technique of rapid-amplification of cDNA ends. The open reading frame of the GbEDS1 gene was 1,647 bp long and encoded a protein of 548 amino acids residues. Comparison of the cDNA and genomic DNA sequence of GbEDS1 indicated that this gene contained a single intron and two exons. Like other EDS1s, GbEDS1 contained a conserved N-terminal lipase domain and an EDS1-specific KNEDT motif. Subcellular localization assay revealed that GbEDS1-green fluorescence protein fusion protein was localized in both cytosol and nucleus. Interestingly, the transcript levels of GbEDS1 were dramatically increased in response to pathogen V. dahliae infection. To investigate the role of GbEDS1 in plant resistance against V. dahliae, a conserved fragment derived from GbEDS1 was used to knockdown the endogenous EDS1 in Nicotiana benthamiana by heterologous virus-induced gene silencing. Our data showed that silencing of NbEDS1 resulted in increased susceptibility to V. dahliae infection in N. benthamiana, suggesting a possible involvement of the novelly isolated GbEDS1 in the regulation of plant defense against V. dahliae.

  6. Analysis of root-knot nematode and fusarium wilt disease resistance in cotton (Gossypium spp.) using chromosome substitution lines from two alien species

    Science.gov (United States)

    To Identify a new germplasm resource, and to validate chromosomal regions and favorable alleles associated with nematode and fungal disease resistance traits, a series of interspecific cotton (Gossypium spp.) chromosome substitution (CS) lines were used in this study. The CS lines were developed in ...

  7. Dietary fiber.

    Science.gov (United States)

    Madar, Z; Thorne, R

    1987-01-01

    Studies done on dietary fiber (DF) over the past five years are presented in this Review. The involvement of dietary fiber in the control of plasma glucose and lipid levels is now established. Two dietary fiber sources (soybean and fenugreek) were studied in our laboratory and are discussed herein. These sources were found to be potentially beneficial in the reduction of plasma glucose in non-insulin dependent diabetes mellitus subjects. They are shown to be acceptable by human subjects and are easy to use either in a mixture of milk products and in cooking. The mechanism by which dietary fiber alters the nutrient absorption is also discussed. The effect of DF on gastric emptying, transit time, adsorption and glucose transport may contribute to reducing plasma glucose and lipid levels. DF was found to be effective in controlling blood glucose and lipid levels of pregnant diabetic women. Dietary fiber may also be potentially beneficial in the reduction of exogenous insulin requirements in these subjects. However, increased consumption of DF may cause adverse side effects; the binding capabilities of fiber may affect nutrient availability, particularly that of minerals and prolonged and high DF dosage supplementation must be regarded cautiously. This is particularly true when recommending such a diet for pregnant or lactating women, children or subjects with nutritional disorders. Physiological effects of DF appear to depend heavily on the source and composition of fiber. Using a combination of DF from a variety of sources may reduce the actual mass of fiber required to obtain the desired metabolic effects and will result in a more palatable diet. Previously observed problems, such as excess flatus, diarrhea and mineral malabsorption would also be minimized.

  8. Small RNA regulation of ovule development in the cotton plant, G. hirsutum L

    Directory of Open Access Journals (Sweden)

    Mavlonov Gafurjon T

    2008-09-01

    Full Text Available Abstract Background The involvement of small RNAs in cotton fiber development is under explored. The objective of this work was to directly clone, annotate, and analyze small RNAs of developing ovules to reveal the candidate small interfering RNA/microRNAs involved in cotton ovule and fiber development. Results We cloned small RNA sequences from 0–10 days post anthesis (DPA developing cotton ovules. A total of 6691 individual colonies were sequenced from 11 ovule small RNA libraries that yielded 2482 candidate small RNAs with a total of 583 unique sequence signatures. The majority (362, 62.1% of these 583 sequences were 24 nt long with an additional 145 sequences (24.9% in the 21 nt to 23 nt size range. Among all small RNA sequence signatures only three mirBase-confirmed plant microRNAs (miR172, miR390 and ath-miR853-like were identified and only two miRNA-containing clones were recovered beyond 4 DPA. Further, among all of the small RNA sequences obtained from the small RNA pools in developing ovules, only 15 groups of sequences were observed in more than one DPA period. Of these, only five were present in more than two DPA periods. Two of these were miR-172 and miR-390 and a third was identified as 5.8S rRNA sequence. Thus, the vast majority of sequence signatures were expressed in only one DPA period and this included nearly all of the 24 nt sequences. Finally, we observed a distinct DPA-specific expression pattern among our clones based upon sequence abundance. Sequences occurring only once were far more likely to be seen in the 0 to 2 DPA periods while those occurring five or more times were the majority in later periods. Conclusion This initial survey of small RNA sequences present in developing ovules in cotton indicates that fiber development is under complex small RNA regulation. Taken together, the results of this initial small RNA screen of developing cotton ovules is most consistent with a model, proposed by Baulcombe, that there

  9. Compositional analysis and rheological properties of gum kondagogu (Cochlospermum gossypium): a tree gum from India.

    Science.gov (United States)

    Vinod, V T P; Sashidhar, R B; Sarma, V U M; Vijaya Saradhi, U V R

    2008-03-26

    Gum kondagogu ( Cochlospermum gossypium) is a tree exudate gum that belongs to the family Bixaceae. Compositional analysis of the gum by HPLC and LC-MS revealed uronic acids to be the major component of the polymer ( approximately 26 mol %). Furthermore, analysis of the gum by GC-MS indicated the presence of sugars such as arabinose (2.52 mol %), mannose (8.30 mol %), alpha- d-glucose (2.48 mol %), beta- d-glucose (2.52 mol %), rhamnose (12.85 mol %), galactose (18.95 mol %), d-glucuronic acid (19.26 mol %), beta- d-galactouronic acid (13.22 mol %), and alpha- d-galacturonic acid (11.22 mol %). Gum kondagogu, being rich in rhamnose, galactose, and uronic acids, can be categorized on the basis of its sugar composition as a rhamnogalacturonan type of gum. The rheological measurements performed on the gum suggest that above 0.6% (w/v) it shows a Newtonian behavior and shear rate thinning behavior as a function of gum concentration. The viscoelastic behavior of gum kondagogu solutions (1 and 2%) in aqueous as well as in 100 mM NaCl solution exhibits a typical gel-like system. The G' (viscous modulus)/ G'' (elastic modulus) ratios of native gum kondagogu (1 and 2%) in aqueous solution were found to be 1.89 and 1.85 and those in 100 mM NaCl to be 1.54 and 2.2, respectively, suggesting a weak gel-like property of the polymer. Crossover values of G' and G'' were observed to be at frequencies of 0.432 Hz for 1% and 1.2 Hz for 2% for native gum in aqueous condition, indicating a predominantly liquid- to solid-like behavior, whereas crossover values of 2.1 Hz for 1% and 1.68 Hz for 2% gum in 100 mM NaCl solution suggest a larger elastic contribution.

  10. Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing

    OpenAIRE

    Page, Justin T.; Huynh, Mark D; Zach S Liechty; Grupp, Kara; Stelly, David; Hulse, Amanda M; Ashrafi, Hamid; Van Deynze, Allen; Wendel, Jonathan F.; Udall, Joshua A.

    2013-01-01

    Understanding the composition, evolution, and function of the Gossypium hirsutum (cotton) genome is complicated by the joint presence of two genomes in its nucleus (AT and DT genomes). These two genomes were derived from progenitor A-genome and D-genome diploids involved in ancestral allopolyploidization. To better understand the allopolyploid genome, we re-sequenced the genomes of extant diploid relatives that contain the A1 (Gossypium herbaceum), A2 (Gossypium arboreum), or D5 (Gossypium ra...

  11. Soluble vs. insoluble fiber

    Science.gov (United States)

    Insoluble vs. soluble fiber; Fiber - soluble vs. insoluble ... There are 2 different types of fiber -- soluble and insoluble. Both are important for health, digestion, and preventing diseases. Soluble fiber attracts water and turns to gel during digestion. ...

  12. Photovoltaic fibers

    Science.gov (United States)

    Gaudiana, Russell; Eckert, Robert; Cardone, John; Ryan, James; Montello, Alan

    2006-08-01

    It was realized early in the history of Konarka that the ability to produce fibers that generate power from solar energy could be applied to a wide variety of applications where fabrics are utilized currently. These applications include personal items such as jackets, shirts and hats, to architectural uses such as awnings, tents, large covers for cars, trucks and even doomed stadiums, to indoor furnishings such as window blinds, shades and drapes. They may also be used as small fabric patches or fiber bundles for powering or recharging batteries in small sensors. Power generating fabrics for clothing is of particular interest to the military where they would be used in uniforms and body armor where portable power is vital to field operations. In strong sunlight these power generating fabrics could be used as a primary source of energy, or they can be used in either direct sunlight or low light conditions to recharge batteries. Early in 2002, Konarka performed a series of proof-of-concept experiments to demonstrate the feasibility of building a photovoltaic cell using dye-sensitized titania and electrolyte on a metal wire core. The approach taken was based on the sequential coating processes used in making fiber optics, namely, a fiber core, e.g., a metal wire serving as the primary electrode, is passed through a series of vertically aligned coating cups. Each of the cups contains a coating fluid that has a specific function in the photocell. A second wire, used as the counter electrode, is brought into the process prior to entering the final coating cup. The latter contains a photopolymerizable, transparent cladding which hardens when passed through a UV chamber. Upon exiting the UV chamber, the finished PV fiber is spooled. Two hundred of foot lengths of PV fiber have been made using this process. When the fiber is exposed to visible radiation, it generates electrical power. The best efficiency exhibited by these fibers is 6% with an average value in the 4

  13. Fiber resources

    Science.gov (United States)

    P. J. Ince

    2004-01-01

    In economics, primary inputs or factors of production define the term ‘resources.’ Resources include land resources (plants, animals, and minerals), labor, capital, and entrepreneurship. Almost all pulp and paper fiber resources are plant materials obtained from trees or agricultural crops. These resources encompass plant materials harvested directly from the land (...

  14. Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum

    Directory of Open Access Journals (Sweden)

    Wei Wang

    2016-12-01

    Full Text Available The data presented in this paper is supporting the research article “Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum” [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian method of MrBayes (version 3.2.4, “Bayesian phylogenetic inference under mixed models” [2], Ramachandran plots of G. raimondii and G. arboreum SODs, the protein sequence used to generate 3D sructure of proteins and the template accession via SWISS-MODEL server, “SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information.” [3] and motif sequences of SODs identified by InterProScan (version 4.8 with the Pfam database, “Pfam: the protein families database” [4].

  15. Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum.

    Science.gov (United States)

    Wang, Wei; Xia, Minxuan; Chen, Jie; Deng, Fenni; Yuan, Rui; Zhang, Xiaopei; Shen, Fafu

    2016-12-01

    The data presented in this paper is supporting the research article "Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum" [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian method of MrBayes (version 3.2.4), "Bayesian phylogenetic inference under mixed models" [2], Ramachandran plots of G. raimondii and G. arboreum SODs, the protein sequence used to generate 3D sructure of proteins and the template accession via SWISS-MODEL server, "SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information." [3] and motif sequences of SODs identified by InterProScan (version 4.8) with the Pfam database, "Pfam: the protein families database" [4].

  16. Dicty_cDB: Contig-U13395-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available on fiber 0-10 day post anthesis Go... 44 3.1 1 ( DT467176 ) GH_CHX19P20.f GH_CHX Gossypium hirsutum cDNA clo...rom clone LK0... 44 3.1 1 ( CO132245 ) GR__Eb44P09.r GR__Eb Gossypium raimondii cDNA clo......ans str... 40 0.026 FM992690_438( FM992690 |pid:none) Candida dubliniensis CD36 chromo... 40 0.034 AF153362_...habdi... 39 0.057 AL844509_625( AL844509 |pid:none) Plasmodium falciparum 3D7 chromo...... 6054 chromos... 39 0.075 FM992691_457( FM992691 |pid:none) Candida dubliniensis CD36 chromo...

  17. Heredity, Reproductive and Adaptive Heterosis and Variability of Intraspecies Hybrids of G. hirsutum L.%陆地棉种内杂种的遗传、繁殖和适应性优势及变异性

    Institute of Scientific and Technical Information of China (English)

    N.A. SAAKOVA; S. M. NABIEW; E. V. KHEGAY; U. M. GANIEV

    2002-01-01

    @@ On the patterns of geographically remote G.hirsutum L. cotton hybrids produced by intraspecies hybridization of local and imported breeds we have investigated particularities in heredity and variability of the most important economical and physiological features, display of reproductive and adaptive heterosis in different water supplement conditions.

  18. Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons

    Science.gov (United States)

    Cotton domestication was achieved by converting perennial trees into annual crops. After ploidization, two allotetraploid species, Gossypium hirsutum and G. barbadense, were domesticated and are cultivated worldwide. However, the overall genetic diversity between and within the cultivated species is...

  19. Spectral discrimination of two pigweeds from cotton with different leaf colors

    Science.gov (United States)

    To implement strategies to control Palmer amaranth (Amaranthus palmeri S. Wats.) and redroot pigweed (Amaranthus retroflexus L.) infestations in cotton (Gossypium hirsutum L.) production systems, managers need effective techniques to identify the weeds. Leaf light reflectance measurements have shown...

  20. Nitrogen fertility and irrigation effects on cottonseed composition

    Science.gov (United States)

    Cottonseed products have become a valuable secondary revenue source for cotton (Gossypium hirsutum L.) producers, but how production practices impact cottonseed composition is not clear. This research evaluated how cottonseed composition was altered by varying irrigation and nitrogen fertilization ...

  1. Photonic Bandgap Fibers

    DEFF Research Database (Denmark)

    Barkou, Stig Eigil; Broeng, Jes; Bjarklev, Anders Overgaard

    1999-01-01

    Photonic bandgap fibers are describes using a new Kagomé cladding structure. These fibers may potentially guide light in low-index regions. Such fibers offer new dispersion properties, and large design flexibility.......Photonic bandgap fibers are describes using a new Kagomé cladding structure. These fibers may potentially guide light in low-index regions. Such fibers offer new dispersion properties, and large design flexibility....

  2. Phytohormonal networks promote differentiation of fiber initials on pre-anthesis cotton ovules grown in vitro and in planta.

    Directory of Open Access Journals (Sweden)

    Hee Jin Kim

    Full Text Available The number of cotton (Gossypium sp. ovule epidermal cells differentiating into fiber initials is an important factor affecting cotton yield and fiber quality. Despite extensive efforts in determining the molecular mechanisms regulating fiber initial differentiation, only a few genes responsible for fiber initial differentiation have been discovered. To identify putative genes directly involved in the fiber initiation process, we used a cotton ovule culture technique that controls the timing of fiber initial differentiation by exogenous phytohormone application in combination with comparative expression analyses between wild type and three fiberless mutants. The addition of exogenous auxin and gibberellins to pre-anthesis wild type ovules that did not have visible fiber initials increased the expression of genes affecting auxin, ethylene, ABA and jasmonic acid signaling pathways within 1 h after treatment. Most transcripts expressed differentially by the phytohormone treatment in vitro were also differentially expressed in the ovules of wild type and fiberless mutants that were grown in planta. In addition to MYB25-like, a gene that was previously shown to be associated with the differentiation of fiber initials, several other differentially expressed genes, including auxin/indole-3-acetic acid (AUX/IAA involved in auxin signaling, ACC oxidase involved in ethylene biosynthesis, and abscisic acid (ABA 8'-hydroxylase an enzyme that controls the rate of ABA catabolism, were co-regulated in the pre-anthesis ovules of both wild type and fiberless mutants. These results support the hypothesis that phytohormonal signaling networks regulate the temporal expression of genes responsible for differentiation of cotton fiber initials in vitro and in planta.

  3. Dicty_cDB: SSG151 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available eum cDNA clone GA__Eb0002H01f, mRNA sequence. 46 0.36 1 AJ513597 |AJ513597.1 Gossypium hirsutum EST, clone suo2...5h09r3. 46 0.36 1 AJ513558 |AJ513558.1 Gossypium hirsutum EST, clone suo25e05r3. 46 0.36 1 AJ513189 |AJ51

  4. Dicty_cDB: Contig-U12511-1 [Dicty_cDB

    Lifescience Database Archive (English)

    Full Text Available DT459483 ) GH_ON37L23.f GH_ON Gossypium hirsutum cDNA clone ... 46 2.4 1 ( DT053024 ) COT_FK_A12 Fiber and O...vule of Xu-142 Lambda Zap E... 46 2.4 1 ( DT051253 ) COT_EJ_G11 Fiber and Ovule o...f Xu-142 Lambda Zap E... 46 2.4 1 ( DT051132 ) COT_EI_C06 Fiber and Ovule of Xu-142 Lambda Zap E... 46 2.4 1... ( DT050196 ) COT_DW_E04 Fiber and Ovule of Xu-142 Lambda Zap E... 46 2.4 1 ( DR457148 ) CM052B12 Cotton Lam

  5. Genetic Dissection of Net Effects Between Yield and Its Components in Sea Island Cotton (Gossypium barbadense L.)

    Institute of Scientific and Technical Information of China (English)

    YE Zi-hong; MEI Yong-jun; ZOU Ke-qin; FU Xian-shu; JIANG Lin-shu

    2008-01-01

    The number of bolls,individual boll weight,and lint percentage are three important yield components of lint yield of cotton.In the present study,nine parents,twenty F1,and twenty F2 crosses of intraspecific hybrids of sea island cotton (Gossypium barbadense L.) were grown at Tarim University,Alar,Xinjiang,China,in 2000 and 2001.Lint yield and its three component traits were measured and analyzed by an extended conditional mixed linear model approach.Lint percentage made the largest contribution to additive,additive x environment,and dominance x environment variations for lint yield.The contribution ratios of number of bolls,individual boll weight,and combined contribution of these two traits to additive x environment and dominance x environment variations for lint yield were not statistically significant.Lint yield of different parents could be affected differently by lint percentage.Lint yield of some parents was closely correlated with lint percentage,whereas for other parents,the behavior of individual boll weight and number of bolls played much more important roles on lint yield than that of lint percentage.It was shown by the conditional and conventional predicted additive x environment interaction effects of parents that the environment condition could influence different parents with varied effects.

  6. Studies on amendment of different biopolymers in sandy loam and their effect on germination, seedling growth of Gossypium herbaceum L.

    Science.gov (United States)

    Patil, Satish Vitthalrao; Salunke, B K; Patil, C D; Salunkhe, R B

    2011-03-01

    Different biopolymers, agar, cellulose, alginate, psyllium gaur gum, and bacterial exopolysaccharide (EPS) powders were amended to check their efficacy in enhancing maximum water holding capacity (MWHC), permanent wilting point (PWP), and germination and seedling growth of the Gossypium herbaceum in a laboratory scale. The efficacy of all biopolymers for enhancement of MWHC, PWP, and growth was also analyzed by measuring organic carbon, organic matter, total nitrogen, respiration rate, and microflora in amended and control sandy loams. The range of concentrations (0.2-2%) of all biopolymers was incorporated in sandy loam containing pots. The soil without polymer was considered as control. The psyllium (0.6%) and bacterial EPS (1%) amended soil has 242 and 233% increase in MWHC and thus delaying in the permanent wilting point by 108 and 84 h at 37 °C, respectively, as compared to control. All biopolymers found to increase more or less MWHC, organic matter, total nitrogen, microflora, and PWP as compared to control. The psyllium and bacterial EPS show the highest increase organic matter, biomass, and microflora. The highest reduction in MWHC after 12 weeks were observed in cellulose, gaur gum, and alginate; besides, psyllium, bacterial EPS, and agar showed comparatively less reduction MWHC, i.e., 24% and 14.5%, respectively. The toxicity studies of biopolymer were carried out on earthworm (Eisenia foetida). It revealed their nontoxic nature. The biopolymer amendment in sandy loam can be an effective strategy to improved soil texture, fertility, and thereby crop yield.

  7. Propagación clonal in vitro y enraizamiento de estacas de algodón nativo (Gossypium barbadense L.

    Directory of Open Access Journals (Sweden)

    Consuelo Rojas-Idrogo

    2013-12-01

    Full Text Available En este trabajo se evalúo el efecto de reguladores de crecimiento en la propagación clonal in vitro y el efecto de diferentes soluciones nutritivas y reguladores de crecimiento en el enraizamiento de estacas de algodón (Gossypium barbadense. En el enraizamiento se evaluó el efecto del agua corriente, las soluciones nutritivas de Knop y Knudson y los reguladores de crecimiento AIA, AIB y floroglucinol sobre estacas obtenidas de las zonas apical, media y basal de la planta. En la combinación ANA 0.1 mg/lt - BAP 1.0 y 2.0 mg/lt, después de 30 días de cultivo in vitro, se alcanzó la mayor elongación de brotes (38.1 y 30.7 mm y número de nudos formados (4.1 y 3.4; el mejor enraizamiento se observó con AIA 0.2 mg/lt formando 3.6 raíces. El enraizamiento de estacas, con brotes formados (40 y 50%, fue mayor cuando se utilizó el tercio medio y superior, tanto en agua corriente como en la solución de Knop y únicamente suplementados con AIB 25 y 50 mg/lt.

  8. Inhibitory potential of Gossypium arboreum leaf extracts on diabetes key enzymes, α-amylase and α-glucosidase

    Directory of Open Access Journals (Sweden)

    Mutiu Idowu Kazeem

    2013-06-01

    Full Text Available One of the antidiabetic therapeutic approaches is the reduction in gastrointestinal glucose production and absorption by inhibiting carbohydrate hydrolyzing enzymes such as α-amylase and α-glucosidase. This present study evaluated the α-amylase and α-glucosidase inhibitory potential of the aqueous, ethanolic and acetone leaf extracts of Gossypium arboreum and to further determine the mode of inhibition of the enzymes using kinetic analysis. The aqueous and acetone extract exhibited potent α-amylase and α-glucosidase inhibitory activity with IC50 value of 10.10 mg/mL and 2.75 mg/mL respectively. These extracts are likely to contain non-competitive inhibitors of both enzymes with reduced Vmax values. The extracts were also found to contain phytochemicals such as tannins and steroids which may be responsible for the inhibitory effect. The results show that the aqueous and acetone extracts of G. arboreum leaf inhibited both α-amylase and α-glucosidase at relatively low concentrations and this could be the reason why the species is employed in the management of blood sugar related disorders by reasonable populations in Nigeria.

  9. Photonic crystal fibers

    DEFF Research Database (Denmark)

    Lægsgaard, Jesper; Hansen, K P; Nielsen, M D;

    2003-01-01

    Photonic crystal fibers having a complex microstructure in the transverse plane constitute a new and promising class of optical fibers. Such fibers can either guide light through total internal reflection or the photonic bandgap effect, In this paper, we review the different types and applications...... of photonic crystal fibers with particular emphasis on recent advances in the field....

  10. Photonic crystal fibers -

    DEFF Research Database (Denmark)

    Libori, Stig E. Barkou

    2002-01-01

    During this ph.d. work, attention has been focused on understanding and analyzing the modal behavior of micro-structured fibers. Micro-structured fibers are fibers with a complex dielectric toplogy, and offer a number of novel possibilities, compared to standard silica based optical fibers. The t...

  11. Photonic Crystal Fiber Attenuator

    Institute of Scientific and Technical Information of China (English)

    Joo; Beom; Eom; Hokyung; Kim; Jinchae; Kim; Un-Chul; Paek; Byeong; Ha; Lee

    2003-01-01

    We propose a novel fiber attenuator based on photonic crystal fibers. The difference in the modal field diameters of a conventional single mode fiber and a photonic crystal fiber was used. A variable optical attenuator was also achieved by applying macro-bending on the PCF part of the proposed attenuator

  12. AcEST: DK959195 [AcEST

    Lifescience Database Archive (English)

    Full Text Available : (bits) Value tr|A9SS49|A9SS49_PHYPA Predicted protein OS=Physcomitrella paten... 176 1e-42 tr|B3TLS9|B3TLS9_ELAGV Fiber...e... 138 3e-31 tr|B6TL35|B6TL35_MAIZE Fiber protein Fb2 OS=Zea mays PE=2 SV=1 137 5e-31 tr|B6TIV8|B6TIV8_MAIZE Fiber... (Fragment) OS=Physcomit... 129 2e-28 tr|B4FRH9|B4FRH9_MAIZE Fiber protein Fb2 OS...=Zea mays PE=2 SV=1 126 1e-27 tr|Q8GT87|Q8GT87_GOSBA Fiber protein Fb2 OS=Gossypium barbadense... 117 7e-25 ...tr|Q4TZT2|Q4TZT2_GOSHI Fb2 OS=Gossypium hirsutum PE=2 SV=1 115 2e-24 tr|B4FDK3|B4FDK3_MAIZE Fiber protein Fb

  13. High power fiber lasers

    Institute of Scientific and Technical Information of China (English)

    LOU Qi-hong; ZHOU Jun

    2007-01-01

    In this review article, the development of the double cladding optical fiber for high power fiber lasers is reviewed. The main technology for high power fiber lasers, including laser diode beam shaping, fiber laser pumping techniques, and amplification systems, are discussed in de-tail. 1050 W CW output and 133 W pulsed output are ob-tained in Shanghai Institute of Optics and Fine Mechanics, China. Finally, the applications of fiber lasers in industry are also reviewed.

  14. Sampling nucleotide diversity in cotton

    Directory of Open Access Journals (Sweden)

    Yu John Z

    2009-10-01

    Full Text Available Abstract Background Cultivated cotton is an annual fiber crop derived mainly from two perennial species, Gossypium hirsutum L. or upland cotton, and G. barbadense L., extra long-staple fiber Pima or Egyptian cotton. These two cultivated species are among five allotetraploid species presumably derived monophyletically between G. arboreum and G. raimondii. Genomic-based approaches have been hindered by the limited variation within species. Yet, population-based methods are being used for genome-wide introgression of novel alleles from G. mustelinum and G. tomentosum into G. hirsutum using combinations of backcrossing, selfing, and inter-mating. Recombinant inbred line populations between genetics standards TM-1, (G. hirsutum × 3-79 (G. barbadense have been developed to allow high-density genetic mapping of traits. Results This paper describes a strategy to efficiently characterize genomic variation (SNPs and indels within and among cotton species. Over 1000 SNPs from 270 loci and 279 indels from 92 loci segregating in G. hirsutum and G. barbadense were genotyped across a standard panel of 24 lines, 16 of which are elite cotton breeding lines and 8 mapping parents of populations from six cotton species. Over 200 loci were genetically mapped in a core mapping population derived from TM-1 and 3-79 and in G. hirsutum breeding germplasm. Conclusion In this research, SNP and indel diversity is characterized for 270 single-copy polymorphic loci in cotton. A strategy for SNP discovery is defined to pre-screen loci for copy number and polymorphism. Our data indicate that the A and D genomes in both diploid and tetraploid cotton remain distinct from each such that paralogs can be distinguished. This research provides mapped DNA markers for intra-specific crosses and introgression of exotic germplasm in cotton.

  15. ANÁLISIS DE LA PRESENCIA NATURAL DE MICORRIZAS EN CULTIVOS DE ALGODÓN (Gossypium barbadense L.) INOCULADOS CON Bacillus megaterium Y/O Bradyrhizobium yuanmingense

    OpenAIRE

    Valencia, Claudia; Universidad Nacional Agraria La Molina (Perú).; Zúñiga, Doris; Universidad Nacional Agraria La Molina (Perú).

    2015-01-01

    Para el proceso de optimización de protocolos se probaron diferentes modificaciones del proceso de tinción propuesto por Phillips & Hayman para permitir la identificación de estructuras intra- radicales derivadas de la interacción planta-hongo; para ello, se extrajeron las raíces de cultivos de algodón (Gossypium barbadense L.) inoculados con Bacillus megaterium (B), Bradyrhizobium yuanmingense (Br) y la interacción de ambos (I), además los controles positivo, con nitrato de potasio, (N+)...

  16. Interactions between a cotton phytopathogen and the host using a genomics analysis

    Science.gov (United States)

    Cotton (Gossypium hirsutum L.) is an economic crop grown worldwide. Numerous G. hirsutum polyploids have been sequenced. Bacterial infections of cotton can cause major yield losses. Pantoea ananatis is a known bacterial pathogen of both cotton buds and bolls. Thus, we conducted a whole genome an...

  17. Amplitude-modulated fiber-ring laser

    DEFF Research Database (Denmark)

    Caputo, J. G.; Clausen, Carl A. Balslev; Sørensen, Mads Peter

    2000-01-01

    Soliton pulses generated by a fiber-ring laser are investigated by numerical simulation and perturbation methods. The mathematical modeling is based on the nonlinear Schrödinger equation with perturbative terms. We show that active mode locking with an amplitude modulator leads to a self-starting......Soliton pulses generated by a fiber-ring laser are investigated by numerical simulation and perturbation methods. The mathematical modeling is based on the nonlinear Schrödinger equation with perturbative terms. We show that active mode locking with an amplitude modulator leads to a self......-starting of stable solitonic pulses from small random noise, provided the modulation depth is small. The perturbative analysis leads to a nonlinear coupled return map for the amplitude, phase, and position of the soliton pulses circulating in the fiber-ring laser. We established the validity of this approach...

  18. Amplitude-modulated fiber-ring laser

    DEFF Research Database (Denmark)

    Caputo, J. G.; Clausen, Carl A. Balslev; Sørensen, Mads Peter

    2000-01-01

    Soliton pulses generated by a fiber-ring laser are investigated by numerical simulation and perturbation methods. The mathematical modeling is based on the nonlinear Schrödinger equation with perturbative terms. We show that active mode locking with an amplitude modulator leads to a self-starting......Soliton pulses generated by a fiber-ring laser are investigated by numerical simulation and perturbation methods. The mathematical modeling is based on the nonlinear Schrödinger equation with perturbative terms. We show that active mode locking with an amplitude modulator leads to a self......-starting of stable solitonic pulses from small random noise, provided the modulation depth is small. The perturbative analysis leads to a nonlinear coupled return map for the amplitude, phase, and position of the soliton pulses circulating in the fiber-ring laser. We established the validity of this approach...

  19. Optical Fiber Fusion Splicing

    CERN Document Server

    Yablon, Andrew D

    2005-01-01

    This book is an up-to-date treatment of optical fiber fusion splicing incorporating all the recent innovations in the field. It provides a toolbox of general strategies and specific techniques that the reader can apply when optimizing fusion splices between novel fibers. It specifically addresses considerations important for fusion splicing of contemporary specialty fibers including dispersion compensating fiber, erbium-doped gain fiber, polarization maintaining fiber, and microstructured fiber. Finally, it discusses the future of optical fiber fusion splicing including silica and non-silica based optical fibers as well as the trend toward increasing automation. Whilst serving as a self-contained reference work, abundant citations from the technical literature will enable readers to readily locate primary sources.

  20. Cytokinin amelioration of yield losses from drought and nematodes

    Science.gov (United States)

    The influence of applied plant growth regulators (PGR) on growth, development and yield in cotton (Gossypium hirsutum L. and Gossypium barbadense L.) has been studied for over half a century. Studies of PGR containing cytokinin alone or in combination with gibbererillins applied at the pinhead squ...

  1. 6-Benzyladenine enhancements of cotton yield

    Science.gov (United States)

    The influence of applied plant growth regulators (PGR) on growth, development and yield in cotton (Gossypium hirsutum L. and Gossypium barbadense L.) has been studied for over half a century. A recent study suggested that cytokinin treatment of young cotton seedlings may enhance overall performanc...

  2. 6-Benzyladenine enhancement of cotton

    Science.gov (United States)

    The influence of applied plant growth regulators (PGR) on growth, development and yield in cotton (Gossypium hirsutum L. and Gossypium barbadense L.) has been studied for over half a century. Studies of PGR containing cytokinin alone or in combination with gibbererillins applied at the pinhead squa...

  3. Identification and Characterization of miRNA Transcriptome in Asiatic Cotton (Gossypium arboreum Using High Throughput Sequencing

    Directory of Open Access Journals (Sweden)

    Muhammad Farooq

    2017-06-01

    Full Text Available MicroRNAs (miRNAs are small 20–24nt molecules that have been well studied over the past decade due to their important regulatory roles in different cellular processes. The mature sequences are more conserved across vast phylogenetic scales than their precursors and some are conserved within entire kingdoms, hence, their loci and function can be predicted by homology searches. Different studies have been performed to elucidate miRNAs using de novo prediction methods but due to complex regulatory mechanisms or false positive in silico predictions, not all of them express in reality and sometimes computationally predicted mature transcripts differ from the actual expressed ones. With the availability of a complete genome sequence of Gossypium arboreum, it is important to annotate the genome for both coding and non-coding regions using high confidence transcript evidence, for this cotton species that is highly resistant to various biotic and abiotic stresses. Here we have analyzed the small RNA transcriptome of G. arboreum leaves and provided genome annotation of miRNAs with evidence from miRNA/miRNA∗ transcripts. A total of 446 miRNAs clustered into 224 miRNA families were found, among which 48 families are conserved in other plants and 176 are novel. Four short RNA libraries were used to shortlist best predictions based on high reads per million. The size, origin, copy numbers and transcript depth of all miRNAs along with their isoforms and targets has been reported. The highest gene copy number was observed for gar-miR7504 followed by gar-miR166, gar-miR8771, gar-miR156, and gar-miR7484. Altogether, 1274 target genes were found in G. arboreum that are enriched for 216 KEGG pathways. The resultant genomic annotations are provided in UCSC, BED format.

  4. Influence of the tidal and rainfall cycles on the population structure and density of Mesacanthion hirsutum gerlach (nematoda, thoracostomopsidae on a tropical sandy beach (Tamandaré Bay, Pernambuco, Brazil

    Directory of Open Access Journals (Sweden)

    Virag Venekey

    2011-09-01

    Full Text Available The population structure (males, females and juveniles and density of Mesacanthion hirsutum Gerlach were studied during the tides (low, flood, high and ebb of two consecutive tidal cycles in four different months of the year (May, July, September and November. Mesacanthion hirsutum density variations showed association with the rainfall cycle, with lower densities during July and September and significantly higher values in May and November. The population structure was constituted mostly by juveniles indicating a continuous reproduction during all the studied period. There were no significant differences between light and dark periods of the day, however, the higher densities detected during the high and ebb tidal stages demonstrate that this species could be dispersing through the water column and/or migrating within the sediment.A estrutura populacional (machos, fêmeas e juvenis e densidade de Mesacanthion hirsutum Gerlach foram estudadas durante as marés (baixa, enchente, alta e vazante de dois ciclos de maré consecutivos, em quatro meses diferentes do ano (Maio, Julho, Setembro e Novembro. As variações de densidade de Mesacanthion hirsutum mostraram associação com o ciclo de chuvas, com densidades mais baixas durante Julho e Setembro e significativamente maiores em Maio e Novembro. A estrutura populacional constituiu-se em sua maior parte por juvenis indicando uma reprodução continua durante todo o período de estudo. Não foram encontradas diferenças significativas entre os períodos claros e escuros do dia, contudo maiores densidades foram detectadas durante as marés altas e vazantes demonstrando que a espécie pode estar se dispersando através da coluna d'água e/ou migrando dentro do sedimento.

  5. Goosegrass (Eleusine indica) density effects on cotton (Gossypium hirsutum)

    Institute of Scientific and Technical Information of China (English)

    MA Xiao-yan[1; WU Han-wen[2; JIANG Wei-li[1; MA Ya-jie[1; MA Yan[1

    2015-01-01

    Goosegrass is one of the worst agricultural weeds on a worldwide basis. Understanding of its interference impact in crop field will provide useful information for weed control programs. Field experiments were conducted during 2010-2012 to determine the influence of goosegrass density on cotton growth at the weed densities of 0, 0.125, 0.25, 0.5, 1, 2, and 4 plants m-1 of row. Seed cotton yield tended to decrease with the increase in weed density, and goosegrass at a density of 4 plants m-1 of row significantly reduced cotton yields by 20 to 27%. A density of 11.6-19.2 goosegrass plant m-1 of row would result in a 50% cotton yield loss from the maximum yield according to the hyperbolic decay regression model. Boll production was not affected in the early growing season. But boll numbers per plant were reduced about 25% at the den- sity of 4 plants m-1 of row in the late growing season. Both cotton boll weight and seed numbers per boll were significantly reduced (8%) at 4 goosegrass plants m-~ of row. Cotton plant height, stem diameter and sympodial branch number were not affected as much as cotton yields by goosegrass competition. Seed index, lint percentage and lint fiber properties were unaffected by weed competition. Intraspecific competition resulted in density-dependent effects on weed biomass per plant, 142-387 g dry weight by harvest. Goosegrass biomass m-2 tended to increase with increasing weed density as indicated by a quadratic response. The adverse impact of goosegrass on cotton yield identified in this study has indicated the need of effective goosegrass management.

  6. PULP FIBER SIZE CHARACTERIZATION

    Institute of Scientific and Technical Information of China (English)

    Shijie Liu

    2004-01-01

    Pulp fiber length distribution characterization has been examined in this study. Because of the fiber morphology: slender in shape, fiber size distribution characterization is a very difficult task. Traditional technique involves separation of the particles by size,such as Bauer-McNett fiber classifier, and measuring the weight fractions. The particle fractions obtained may or may not reflect the desired size classification.On the other hand, the more recent technique through optical measurement of fiber length is limited by its inability to measure the mass of the particle fractions.Therefore, not only the two techniques fail to generate identical results, either one was accepted to be of better value. Pure hardwood kraft, softwood kraft, and their mixture samples have been measured for their fiber length distributions using an optical fiber quality analyzer: FQA. The data obtained from FQA are extensively studied to investigate more reliable way of representing the fiber length data and thus examining the viable route for measuring the fiber size distributions. It has been found that the fiber length averaged length 11 is a viable indicator of the average pulp fiber length. The fiber size fraction and/or distribution can be represented by the fiber "length" fractions.

  7. Nonlinear Photonic Crystal Fibers

    DEFF Research Database (Denmark)

    Hansen, Kim Per

    2004-01-01

    Despite the general recession in the global economy and the collapse of the optical telecommunication market, research within specialty fibers is thriving. This is, more than anything else, due to the technology transition from standard all-glass fibers to photonic crystal fibers, which, instead...... of doping, use a microstructure of air and glass to obtain a refractive index difference between the core and the cladding. This air/glass microstructure lends the photonic crystal fibers a range of unique and highly usable properties, which are very different from those found in solid standard fibers....... The freedom to design the dispersion profile of the fibers is much larger and it is possible to create fibers, which support only a single spatial mode, regardless of wavelength. In comparison, the standard dispersion-shifted fibers are limited by a much lower index-contrast between the core and the cladding...

  8. Glass Fibers: Quo Vadis?

    Directory of Open Access Journals (Sweden)

    Edith Mäder

    2017-02-01

    Full Text Available Since the early 1930s, the process of melting glass and subsequently forming fibers, in particular discontinuous fiber glass or continuous glass filaments, evolved into commercial-scale manufacturing.[...

  9. Fiber Optics Technology.

    Science.gov (United States)

    Burns, William E.

    1986-01-01

    Discusses various applications of fiber optics technology: information systems, industrial robots, medicine, television, transportation, and training. Types of jobs that will be available with fiber optics training (such as electricians and telephone cable installers and splicers) are examined. (CT)

  10. Fiber Optics Instrumentation Development

    Science.gov (United States)

    Chan, Patrick Hon Man; Parker, Allen R., Jr.; Richards, W. Lance

    2010-01-01

    This is a general presentation of fiber optics instrumentation development work being conducted at NASA Dryden for the past 10 years and recent achievements in the field of fiber optics strain sensors.

  11. Fundamentals of fiber lasers and fiber amplifiers

    CERN Document Server

    Ter-Mikirtychev, Valerii (Vartan)

    2014-01-01

    This book covers the fundamental aspects of fiber lasers and fiber amplifiers, and includes a wide range of material from laser physics fundamentals to state-of-the-art topics in this rapidly growing field of quantum electronics. Emphasis is placed on the nonlinear processes taking place in fiber lasers and amplifiers, their similarities, differences to, and their advantages over other solid-state lasers. The reader will learn basic principles of solid-state physics and optical spectroscopy of laser active centers in fibers, main operational laser regimes, and practical recommendations and suggestions on fiber laser research, laser applications, and laser product development. The book will be useful for students, researchers, and professionals who work with lasers, in the optical communications, chemical and biological industries, etc.

  12. Oil sorption by lignocellulosic fibers

    Science.gov (United States)

    Beom-Goo. Lee; James S. Han; Roger M. Rowell

    1999-01-01

    The oil sorption capacities of cotton fiber, kenaf bast fiber, kenaf core fiber, and moss fiber were compared after refining, extraction, and reduction in particle sizes. The tests were conducted on diesel oil in a pure form. Cotton fiber showed the highest capacity, followed by kenaf core and bast fibers. Wetting, extraction, and reduction in particle size all...

  13. Whole Grains and Fiber

    Science.gov (United States)

    ... whole grains. Does not contain partially hydrogenated oils. Dietary Fiber Dietary fiber is the term for several materials that make ... water. When eaten regularly as part of a diet low in saturated fat and trans fat soluble fiber has been associated with increased diet quality and ...

  14. Resonant filtered fiber amplifiers

    DEFF Research Database (Denmark)

    Alkeskjold, Thomas Tanggaard; Laurila, Marko; Olausson, Christina Bjarnal Thulin

    2013-01-01

    In this paper we present our recent result on utilizing resonant/bandgap fiber designs to achieve high performance ytterbium doped fiber amplifers for achieving diffraction limited beam quality in large mode area fibers, robust bending performance and gain shaping for long wavelength operation of...

  15. Mineral Fiber Toxicology

    Science.gov (United States)

    The chemical and physical properties of different forms of mineral fibers impact biopersistence and pathology in the lung. Fiber chemistry, length, aspect ratio, surface area and dose are critical factors determining mineral fiber-associated health effects including cancer and as...

  16. The Fiber Optic Connection.

    Science.gov (United States)

    Reese, Susan

    2003-01-01

    Describes the fiber optics programs at the Career and Technical Center in Berlin, Pennsylvania and the Charles S. Monroe Technology Center in Loudoun County, Virginia. Discusses the involvement of the Fiber Optic Association with education, research and development, manufacturing, sales, distribution, installation, and maintenance of fiber optic…

  17. Fiber Nonlinearities: A Tutorial

    Institute of Scientific and Technical Information of China (English)

    Govind P. Agrawal

    2003-01-01

    Fiber nonlinearities have long been regarded as being mostly harmful for fiber-optic communication systems. Over the last few years, however, the nonlinear effects are increasingly being used for practical telecommunications applications,the Raman amplification being only one of the recent examples. In this tutorial I review the vario us nonlinear effects occurring in optical fibers from both standpoints..

  18. Fiber Nonlinearities: A Tutorial

    Institute of Scientific and Technical Information of China (English)

    Govind; P.; Agrawal

    2003-01-01

    Fiber nonlinearities have long been regarded as being mostly harmful for fiber-optic communication systems. Over the last few years, however, the nonlinear effects are increasingly being used for practical telecommunications applications, the Raman amplification being only one of the recent examples. In this tutorial I review the various nonlinear effects occurring in optical fibers from both standpoints..

  19. A molecular linkage map of tomato displaying chromosomal locations of resistance gene analogs based on a Lycopersicon esculentum x Lycopersicon hirsutum cross.

    Science.gov (United States)

    Zhang, L P; Khan, A; Niño-Liu, D; Foolad, M R

    2002-02-01

    A molecular linkage map of tomato was constructed based on a BC1 population (N = 145) of a cross between Lycopersicon esculentum Mill. line NC84173 (maternal and recurrent parent) and Lycopersicon hirsutum Humb. and Bonpl. accession PI126445. NC84173 is an advanced breeding line that is resistant to several tomato diseases, not including early blight (EB) and late blight (LB). PI126445 is a self-incompatible accession that is resistant to many tomato diseases, including EB and LB. The map included 142 restriction fragment length polymorphism (RFLP) markers and 29 resistance gene analogs (RGAs). RGA loci were identified by PCR amplification of genomic DNA from the BC1 population, using ten pairs of degenerate oligonucleotide primers designed based on conserved leucine-rich repeat (LRR), nucleotide binding site (NBS), and serine (threonine) protein kinase (PtoKin) domains of known resistance genes (R genes). The PCR-amplified DNAs were separated by denaturing polyacrylamide gel electrophoresis (PAGE), which allowed separation of heterogeneous products and identification and mapping of individual RGA loci. The map spanned 1469 cM of the 12 tomato chromosomes with an average marker distance of 8.6 cM. The RGA loci were mapped to 9 of the 12 tomato chromosomes. Locations of some RGAs coincided with locations of several known tomato R genes or quantitative resistance loci (QRLs), including Cf-1, Cf-4, Cf-9, Cf-ECP2, rx-1, and Cm1.1 (chromosome 1); Tm-1 (chromosome 2); Asc (chrromosme 3); Pto, Fen, and Prf (chromosome 5); 01-1, Mi, Ty-1, Cm6.1, Cf-2, CF-5, Bw-5, and Bw-1 (chromosome 6); I-1, 1-3, and Ph-1 (chromosome 7); Tm-2a and Fr1 (chromosome 9); and Lv (chromosome 12). These co-localizations indicate that the RGA loci were either linked to or part of the known R genes. Furthermore, similar to that for many R gene families, several RGA loci were found in clusters, suggesting their potential evolutionary relationship with R genes. Comparisons of the present map with

  20. An evaluation of eco-friendly naturally coloured cottons regarding seed cotton yield, yield components and major lint quality traits under conditions of East Mediterranean region of Turkey.

    Science.gov (United States)

    Efe, Lale; Killi, Fatih; Mustafayev, Sefer A

    2009-10-15

    In the study carried out in 2002-2003 in the East Mediterranean region of Turkey (in Kahramanmaras Province), four different naturally coloured cotton (Gossypium hirsutum L.) (dark brown, light brown, cream and green) lines from Azerbaijan and two white linted cotton varieties (Maras-92 and Sayar-314 (G. hirsutum L.)) of the region were used as material. The aim of this study was to determine seed cotton yield and yield components and major lint quality traits of investigated coloured cotton lines comprising white linted local standard cotton varieties. Field trials were established in randomized block design with four blocks. According to two year's results, it was determined that naturally coloured cottons were found similar to both white linted standard cotton varieties for sympodia number and seed cotton yield. For boll number per plant, except green cotton line all coloured cotton lines were similar to standard varieties or even some of them were better than standards. For ginning outturn, dark brown, cream and green cotton lines were found statistically similar to standard Maras-92. But all naturally coloured cotton lines had lower seed cotton weight per boll and generally lower fiber quality than white linted standard varieties. For fiber length and fiber strength cream cotton line was the best coloured cotton. And for fiber fineness only green cotton line was better than both standards. It can be said that naturally coloured cotton lines need to be improved especially for fiber quality characters in the East Mediterranean region of Turkey.

  1. Fiber draw synthesis

    Science.gov (United States)

    Orf, Nicholas D.; Shapira, Ofer; Sorin, Fabien; Danto, Sylvain; Baldo, Marc A.; Joannopoulos, John D.; Fink, Yoel

    2011-01-01

    The synthesis of a high-melting temperature semiconductor in a low-temperature fiber drawing process is demonstrated, substantially expanding the set of materials that can be incorporated into fibers. Reagents in the solid state are arranged in proximate domains within a fiber preform. The preform is fluidized at elevated temperatures and drawn into fiber, reducing the lateral dimensions and bringing the domains into intimate contact to enable chemical reaction. A polymer preform containing a thin layer of selenium contacted by tin–zinc wires is drawn to yield electrically contacted crystalline ZnSe domains of sub-100-nm scales. The in situ synthesized compound semiconductor becomes the basis for an electronic heterostructure diode of arbitrary length in the fiber. The ability to synthesize materials within fibers while precisely controlling their geometry and electrical connectivity at submicron scales presents new opportunities for increasing the complexity and functionality of fiber structures.

  2. Nonlinear Photonic Crystal Fibers

    DEFF Research Database (Denmark)

    Hansen, Kim Per

    2004-01-01

    , leading to reduced mode confinement and dispersion flexibility. In this thesis, we treat the nonlinear photonic crystal fiber – a special sub-class of photonic crystal fibers, the core of which has a diameter comparable to the wavelength of the light guided in the fiber. The small core results in a large...... nonlinear coefficient and in various applications, it is therefore possible to reduce the required fiber lengths quite dramatically, leading to increased stability and efficiency. Furthermore, it is possible to design these fibers with zero-dispersion at previously unreachable wavelengths, paving the way...... for completely new applications, especially in and near the visible wavelength region. One such application is supercontinuum generation. Supercontinuum generation is extreme broadening of pulses in a nonlinear medium (in this case a small-core fiber), and depending on the dispersion of the fiber, it is possible...

  3. Caracterización de los ácidos húmicos extraídos de cuatro lombricompuestos y su efecto sobre la germinación de semillas de maíz Zea mays L., algodón Gossypium hirsutum y tomate Lycopersicon esculentum L.

    Directory of Open Access Journals (Sweden)

    Gómez Zambrano Jairo

    1996-12-01

    Full Text Available

    The work perfomed to characterize the elemental composition and functional groups of humic acids extracted from four lombricompost cow dung, filter press cake of sugar cane, coffee pulp and grass residue the total content of essential elements and its distribution in the humic and no humic fractions were determined. It was evalued the effect of two concentrations of humic acids (150 and 300 ppm upon seed germination of maize, cotton and tomat. There were found differences in the elemental composition (CHON and functional groups (COOH, OH phedic and carbony of the humic acids atributed to variations in composition of the original substrates. The lombricompost of cow dung showed higher oxidation values (O/H = 0.49 than the lombricompost of filter press cake of sugar cane (0.40 sugering a higher grade of humification of the first. The grass residue showed higher contribution to the CIC (COOH + OH = 9. O me/g than the coffe pulp (7. 1 me/g the total essential elements were concentrated in the remanent residue, with lower content in the water and 0.1M HCL solutions; the fulvic and humic fractions had very low content of these elements. The humic acid at the concentrations tested did not have any effect on the germination of maize and cotton, and depressed the germination of tomato seeds.

    El trabajo se realizó con el fin de caracterizar por su composición elemental y contenido de grupos funcionales, los acidos húmicos extraídos de cuatro lombricompuestos (bovinaza, cachaza, pulpa de café y residuo de prado. Se determinó el contenido y distribución de los elementos esenciales totales en las fracciones húmicas y no de acidos húmicas. Se evaluó el efecto de dos concentraciones de acidos húmicos (150 y 300 ppm sobre la germinación de semillas de maíz, algodón y tomate. Se encontraron diferencias en el contenido elemental (CHON y grupos funcionales (COOH, OH fenólico y carbonilo atribuido a variaciones en la composición de los materiales de origen. La bovinaza (O/H = 0.49 mostró mayor oxidación que la cachaza (0.40 sugiriendo mayor grado de humificación de la primera. El residuo de prado mostró la mayor contribución a la CIC (COOH + OH = 9. O m.e/g y la pulpa de café la menor (7.1 m.e/g. Los elementos esenciales totales se distribuyeron con preferencia en el residuo remanente y en las fracciones solubles en agua y HCL 0.1M, con muy bajos contenidos en los fulvatos yacidos húmicos. No se encontró respuesta a la acción de los acidos húmicos sobre la germinación de semillas de maíz y algodón y se produjo efectos depresivos en los de tomate.

  4. SNS vil høre om det supplerende materiale giver anledning til ændringer i de tidligere fremsendte risikovurderinger. Gossypium hirsutum (281-24-236/3006-210-23). Supplerende materiale til sagen (Four questions: Molecular characterisation / Food-feed assessment). Modtaget 12-12-2005, deadline 16

    DEFF Research Database (Denmark)

    Kjellsson, Gøsta; Damgaard, Christian; Strandberg, Morten Tune

    2004-01-01

    "DMU finder at det nye materiale om den molekulære karakterisering af 281-24-236x3006-210-23 bomulden, ikke giver anledning til at ændre den tidligere riskovurdering. Vedr. spørgsmål 1 er det i svaret fra anmelderen blevet tilfredsstillende redegjort for hvilket materiale der blev anvendt. Vedr s...

  5. Caracterización de los ácidos húmicos extraídos de cuatro lombricompuestos y su efecto sobre la germinación de semillas de maíz Zea mays L., algodón Gossypium hirsutum y tomate Lycopersicon esculentum L.

    OpenAIRE

    Gómez Zambrano Jairo; Miranda V. José Carlos; Carrillo Milena Carmen

    1996-01-01

    The work perfomed to characterize the elemental composition and functional groups of humic acids extracted from four lombricompost cow dung, filter press cake of sugar cane, coffee pulp and grass residue the total content of essential elements and its distribution in the humic and no humic fractions were determined. It was evalued the effect of two concentrations of humic acids (150 and 300 ppm) upon seed germination of maize, cotton and tomat. There were found differences in the ele...

  6. Caracterización de los ácidos húmicos extraídos de cuatro lombricompuestos y su efecto sobre la germinación de semillas de maíz zea mays l., algodón gossypium hirsutum y tomate lycopersicon esculentum l.

    OpenAIRE

    Carrillo, Milena Carmen; Gómez Zambrano, Jairo; Miranda V., José Carlos

    2010-01-01

    The work perfomed to characterize the elemental composition and functional groups of humic acids extracted from four lombricompost cow dung, filter press cake of sugar cane, coffee pulp and grass residue the total content of essential elements and its distribution in the humic and no humic fractions were determined. It was evalued the effect of two concentrations of humic acids (150 and 300 ppm) upon seed germination of maize, cotton and tomat. There were found differences in the elemental co...

  7. Breeding and Identification of Herbicide-resistant Genic Male-sterile Line Yu98-8A1 of Cotton(Gossypium hirsutum L.)%新型抗除草剂棉花不育系Yu98-8A1的培育及鉴定

    Institute of Scientific and Technical Information of China (English)

    杨晓杰; 谢德意; 赵元明; 李武; 赵付安; 段铮铮; 祝水金; 房卫平

    2013-01-01

    通过连续回交,将抗除草剂基因EPSPS-G6转育花粉败育彻底(无微量花粉,不育度达100%)的棉花单基因隐性控制的核不育系Yu98-8A,进而培育成抗除草剂核不育系Yu98-8A1.对该转育不育系花冠表型测量观察表明,与同质系正常可育株比较,不育株花冠较小,不育株子房直径略大于可育株,花柱长和花柱外露长度均明显高于同质系正常可育株,花柱头外露为其最显著的表型特征;显微观察显示,不育系Yu98-8A1小孢子败育主要是在四分体形成后的小孢子发育期.小孢子败育特征表现为花粉粒无内含物、无刺突产生,最后解体、退化.PCR分子鉴定表明,抗除草剂基因EPSPS-G6转育入Yu98-8A,除草剂抗性试验表明,该转育不育系可抗质量百分比浓度达0.3%的草甘膦.该抗除草剂核不育系的培育在棉花杂种优势利用方面有重大利用价值.%Yu98-8A1,a herbicide-resistant cotton genic male-sterile line,was developed from a genic malesterile line Yu98-8A by successive backcrossing cotton line EHC09-002 which possessed the herbicide-resistant gene EPSPS-G6.Compared with homogeneity normal fertile plants,its significant characteristics included smaller corolla,bigger Ovary diameter,style length,and exposed stigmas by corolla phenotype observation.Among theses characteristics,exposed stigmas was the most significant one.Cytological observation showed that the anther abortion of Yu98-8A1 occurred during the stage of microspore development,which displayed without inclusion in pollen grain and spinescent protuberance on the pollen wall,and the microspore appeared abnormal and break down gradually.PCR identification and glyphosate resistance test indicated that herbicide-resistant gene EPSPS-G6 had been successfully aggregated into Yu98-8A,and the anti-herbicide concentration reached up to 0.3%.The cultivation of herbicide-resistant sterile line made Yu98-8A1 have significant value in the utilization of cotton heterosis.

  8. Aplicação de misturas de diuron com MSMA, e com paraquat, no controle de plantas daninhas de folhas largas em cultura de algodão (Gossypium hirsutum L. Mixture of diuron whit MSMA and with paraquat for broadleaved weeds control in cotton

    Directory of Open Access Journals (Sweden)

    L. S. P. Cruz

    1978-01-01

    Full Text Available Em ensaio de campo conduzido em 1975/76 procurou-se avaliar a ação de misturas de MSMA com diuron e de paraquat com diuron, aplicadas em pós-emergência, em jato dirigido, em duas épocas diferentes, no controle de algumas plantas daninhas de folhas largas em algodão: carrapicho- do-campo (Acanthospermum australe (Loef O. Kuntze , falsa-poaia (Borreria ala ta (Aubl DC, poaia-branca (Richardia brasiliensis Gomez e guanxuma (Sida spp . A vegetação natural da área do ensaio era formada ainda pela gramínea capim-de-colchão (Digitaria sanguinalis (L. Scop . Os resultados mostraram que as misturas de 2,00 kg e 2,70 kg/ha de MSMA com, respectivamente 0,30 kg e 0,40 kg/ha de diuron, e a mistura de 0.60 kg/ha de paraquat com 0,60 kg/ ha de diuron, foram eficientes no co ntro le daquelas dicotiledôneas, e também no da gramínea. Todos os tratamentos provocaram leves sintomas de fitotoxicidade nos algodoeiros, mas desapareceram depois e não prejudicaram o desenvolvimento vegetativo das plantas, assim como a produção de algodão em caroço.In a field trial carried out in 1975/76, a diuron mixtu re with MSMA and another with paraquat was tested on broadleaved weeds in cotton crops. The applications were done in postemergence, directed-spray, in two different periods. The broadleaved weeds observed in the trial were Acanthospermum australe , Borreria alata, Richardia brasiliensis, and Sida spp, also the grass Digitaria sanguinalis. Best results were obtained with the mixture of 0,60 kg/ha of paraquat with 0,60 kg/ha of diuron, and 2,70 kg/ha of MSMA with 0,40 kg/ ha of diuron, or 2,00 kg/ha of MSMA with 0,30 kg/ha of diuron. All the treatments caused sl ight symptons of toxic ity in cotton, which disappeared later and did not damage the production.

  9. Effects of Early Fruiting Branch Removal on Growth, Development and Senescence Processes in Transgenic Bt Cotton(Gossypium hirsutum L.)%去早果枝对转基因抗虫棉生长发育与衰老进程的调控效应

    Institute of Scientific and Technical Information of China (English)

    翟立超; 张永江; 刘连涛; 孙红春; 朱秀金; 李存东

    2012-01-01

    Bt-transgenic cotton plants with two different sowing dates were treated normally (CK), or by removing one(Rl), two (R2) or three basal fruiting branches(R3) to study the effects of early fruiting branch removal on growth, development and senescence processes in a two-year experiment. The results showed that the removal of early fruiting branches delayed the process of growth and development there was no difference between R1 and CK in the total number of fruiting branches, but R2 and R3 were significantly lower than CK), but had no obvious effects on the total fruiting nodes. Early fruiting branch removal significantly increased the LAI and dry matter accumulation in plants of the first sowing date over two years(R1, R2 and R3 increased the dry matter weight on average by 13.5%, 17.5% and 19.0%, respectively, compared with CK), but there was no significant difference in plants of the second sowing date. For plants of the first sowing date, early fruiting branch removal significantly decreased the abscission and rotten boll rates and promoted seed yield over the two year period. Rl, R2 and R3 decreased the abscission rate by 5.9%, 6.4% and 9.5%, respectively, and rotten boll rate by 3.8%, 3.1% and 4.3%, and the Rl and R2 treatments enhanced the seed cotton yield by 9.6% and 8.1%, respectively. There was no significant yield increase in plants of the second sowing date; there was even a decrease for some treatments.%以转基因抗虫棉品种为材料,设置了2个播期和4种去早果枝方式(去基部1个、2个、3个果枝及不去果枝的对照)处理,研究去除早期果枝对棉花生长发育及衰老进程的影响.2年结果表明,去早果枝推迟了棉花的生育进程;去掉1个早果枝处理总果枝数与对照无差异,但去掉2个、3个果枝后明显低于对照,总果节数差异不显著;去早果枝显著提高了第1播期棉花叶面积指数和干物质积累量,去1个、2个和3个果枝处理的干物质积累量在2年中平均比对照高13.5%,17.5%,19.0%,但在第2播期差异不明显;去早果枝降低了第1播期棉花脱落率和烂铃率并提高了棉花的子棉产量,脱落率在2年中平均比对照降低4.5,5.8和9.0百分点,烂铃率平均降低2.2,4.5,4.8百分点;去1个和2个果枝处理的子棉产量在2年的第1播期中比对照平均高9.6%和8.1%,但在第2播期增产不明显,甚至减产.

  10. In vitro Expression and Characterization of a GhDREB Transcription Factor Containing AP2 Domain in Gossypium hirsutum%含有AP2结构域的一个陆地棉GhDREB转录因子的特性及体外表达

    Institute of Scientific and Technical Information of China (English)

    Xian-guo CHENG; Yu-xia HOU

    2002-01-01

    @@ Abiotic stress including drought, low temperature, ABA and high salt is major factor affecting the plant growth. Isolation and functional study of abiotic stress-related gene will be helpful to elucidate the signal transduction mechanism of the target gene under abiotic stress during the growth of plant. By using gene-transfer technique, the target gene is incorporated into the plant to improve the adaptation of plant to abiotic stress.

  11. Kommentarer til opdateret risikovurdering og ansøgning. Gossypium hirsutum (281-24-236/3006-210-23), Insect resistance by Bt-toxin (lepidoptera) X Insect resistance by Bt-toxin (coleoptera); herbicide tolerance to glyphosate. Modtaget 03-04-2006, deadline 02-05-2006, svar 07-04-2006

    DEFF Research Database (Denmark)

    Kjellsson, Gøsta; Strandberg, Morten Tune; Christensen, Christian Dam

    2006-01-01

    tolerante over for insektangreb fra larver af forskellige sommerfuglearter. Desuden indeholder bomulden et gen, der gør den tolerant overfor glufosinat-ammonium herbicider. Bomulden søges kun godkendt til import af frø samt forarbejdning og anvendelse til dyrefoder og fødevarer, men ikke til dyrkning eller...

  12. Cloning and Expression of the Chloroplast Copper/Zinc-Superoxide Dismutase Gene in Upland Cotton (Gossypium hirsutum L.)%陆地棉叶绿体铜锌超氧化物歧化酶基因的克隆与表达

    Institute of Scientific and Technical Information of China (English)

    胡根海; 喻树迅; 范术丽; 宋美珍

    2007-01-01

    A full-length 1043-base-pair cDNA clone encoding a chloroplast copper/zinc superoxide dismutase (Cu/Zn-SOD) of upland cotton was first isolated by rapid amplification of cDNA ends (RACE) from the leaves of Nucleotide sequence analysis of the clone revealed that it contained the complete coding sequence of the mature SOD isozyme subunit, along with a 60-amino acid transit peptide at N-terminal. The amino acid sequence predicted from the full-length clone showed 66%-74% homology with the amino acid sequences of Cu/Zn-SOD from several other plants. This gene was found to be expressed in the leaves and stems, but not in roots, flowers,and hypocotyls, indicating that the gene was expressed only in green tissues. Also, its expression was found to be most active at seedling stage and declined gradually in later development stages. Expression of this cotton Cu/Zn-SOD gene by using the pET-21a (+) expression vector in E. coli BL21 (DE3) led to the production of a novel 29 kD polypeptide with SOD enzyme activity, confirming that the cloned cotton Cu/Zn-SOD cDNA was indeed encoding a functioning SOD enzyme.%以陆地棉'CRI36'的叶片为材料,使用RACE技术克隆到了棉花叶绿体Cu/Zn-SOD酶基因.基因序列全长共1 043 bp,含有完整的开放阅读框.推导的氨基酸序列分析显示含有叶绿体信号肽,和已知植物的叶绿体Cu/Zn-SOD酶蛋白的氨基酸残基的同源性在66%~74%之间.基因的表达谱分析显示:棉花叶绿体Cu/Zn-SOD酶基因主要在叶片、茎中表达,根、花和下胚轴中没有检测到信号,即基因的表达主要在棉花的绿色组织.不同生育期的表达谱结果证实:该基因主要在苗期表达,以后表达逐渐减少.用pET-21a(+)构建了原核表达载体,在大肠杆菌BL21(DE3)的表达结果显示:表达后得到一个29.0 kD的新蛋白,其分子量与预期目标一致.对SOD酶活性的分析证实,重组菌的酶活性显著增加,证明克隆的基因具有活性.

  13. GhCPS and GhKS Encoding Gibberellin Biosynthesis Enzymes Involve in Inhibition of Leaf Growth by Mepiquat Chloride in Cotton (Gossypium hirsutum L.)%赤霉素生物合成酶基因GhCPS和GhKS参与甲哌鎓对棉花幼苗叶片生长的控制

    Institute of Scientific and Technical Information of China (English)

    王丽; 张明才; 杜明伟; 田晓莉; 李召虎

    2014-01-01

    室内盆栽欣抗4,在棉花幼苗第3片真叶完全展平时(第4叶未展开)鎓叶面喷施甲哌(DPC),研究DPC对棉花幼苗叶片生长的控制与赤霉素(GA)合成早期关键酶柯巴基焦磷酸合酶(CPS)和内根-贝壳杉烯合酶(KS)基因表达的关系。结果表明, DPC处理显著减小棉花幼苗第3和第4叶的叶面积,第4叶叶面积受控制程度较第3叶大;80 mg L-1 DPC处理的棉花幼苗第3和第4叶中GA4含量分别于处理后4 d和4~6 d显著低于对照;与对照相比,80 mg L-1 DPC处理的棉花幼苗第3叶中GhCPS和GhKS表达在处理后1~4 d显著降低,而第4叶中GhCPS和GhKS的表达在处理后1~6 d显著降低。由此可见, DPC通过影响GhCPS和GhKS的表达,降低内源活性GA4的含量,控制棉花幼苗叶片生长,且较幼嫩叶片对DPC较敏感。%Ent-copalyl diphosphate synthase (CPS) and ent-kaurene synthase (KS) are the key enzymes involved in the early steps of gibberellin (GA) biosynthesis. This paper aimed at elucidating whether the action of mepiquat chloride (DPC) on leaf growth was related to the expression levels of GhCPS and GhKS in cotton seedlings. DPC was foliar applied to seedlings at the 3rd leaf expanded stage of cotton cultivar Xinkang 4 by pot culture. The results showed that DPC significantly decreased the leaf area, and the area of the 4th leaf was decreased more than that of the 3rd leaf. DPC at 80 mg L-1 markedly reduced GA4 content in the 3rd leaf at four days after treatment and in the 4th leaf from four to six days after treatment. The expression levels of GhCPS and GhKS in the 3rd leaf were decreased by DPC from one to four days after treatment, and similar trends were observed in the 4th leaf from one to six days after treatment. All the results suggested that DPC could reduce endogenous GA4 content by downregu-lating GhCPS and GhKS expressions, leading to a smaller leaf size. Otherwise, the younger leaf was more sensitive to DPC.

  14. 陆地棉成花素同源基因GhFT1原核表达载体的构建及诱导表达分析%Construction of Prokaryotic Expression Vector of Gossypium hirsutum Florigen Homologous Gene GhFT1 and Analyses of Inducible Expression

    Institute of Scientific and Technical Information of China (English)

    郭丹丽; 刘慧; 吴晓庆; 黄先忠

    2015-01-01

    为了进一步研究棉花GhFT1蛋白的功能,本研究构建了原核表达载体pET30a-GhFT1,并转化至宿主菌株BL21 (DE3)中,研究蛋白表达和构建抗体.研究结果发现,37℃条件下,1.0 mmol/L的异丙醇-β-D-半乳糖苷(ITPG)在不同诱导时间下GhFT1蛋白均可表达,并且目的蛋白主要以包涵体和可溶蛋白的形式存在.制备抗体后经酶联免疫吸附剂测定(ELISA)检测表明,抗体血清与纯化的GhFT1重组蛋白有良好的免疫反应性.该研究可为深入研究棉花GhFT1蛋白的生物学功能奠定基础.

  15. SNS vil høre om det supplerende materiale giver anledning til ændringer i de tidligere fremsendte risikovurderinger. Gossypium hirsutum (281-24-236/3006-210-23). Supplerende materiale til sagen (Four questions: Molecular characterisation / Food-feed assessment). Modtaget 12-12-2005, deadline 16

    DEFF Research Database (Denmark)

    Kjellsson, Gøsta; Damgaard, Christian; Strandberg, Morten Tune

    2004-01-01

    "DMU finder at det nye materiale om den molekulære karakterisering af 281-24-236x3006-210-23 bomulden, ikke giver anledning til at ændre den tidligere riskovurdering. Vedr. spørgsmål 1 er det i svaret fra anmelderen blevet tilfredsstillende redegjort for hvilket materiale der blev anvendt. Vedr s...

  16. Hierarchically Structured Electrospun Fibers

    Directory of Open Access Journals (Sweden)

    Nicole E. Zander

    2013-01-01

    Full Text Available Traditional electrospun nanofibers have a myriad of applications ranging from scaffolds for tissue engineering to components of biosensors and energy harvesting devices. The generally smooth one-dimensional structure of the fibers has stood as a limitation to several interesting novel applications. Control of fiber diameter, porosity and collector geometry will be briefly discussed, as will more traditional methods for controlling fiber morphology and fiber mat architecture. The remainder of the review will focus on new techniques to prepare hierarchically structured fibers. Fibers with hierarchical primary structures—including helical, buckled, and beads-on-a-string fibers, as well as fibers with secondary structures, such as nanopores, nanopillars, nanorods, and internally structured fibers and their applications—will be discussed. These new materials with helical/buckled morphology are expected to possess unique optical and mechanical properties with possible applications for negative refractive index materials, highly stretchable/high-tensile-strength materials, and components in microelectromechanical devices. Core-shell type fibers enable a much wider variety of materials to be electrospun and are expected to be widely applied in the sensing, drug delivery/controlled release fields, and in the encapsulation of live cells for biological applications. Materials with a hierarchical secondary structure are expected to provide new superhydrophobic and self-cleaning materials.

  17. Fiber Lasers V

    DEFF Research Database (Denmark)

    Hansen, Kim P.; Olausson, Christina Bjarnal Thulin; Broeng, Jes

    2008-01-01

    High-power fiber lasers and amplifiers have gained tremendous momentum in the last five years, and many of the traditional manufactures of gas and solid-state lasers are pursuing the attractive fiber-based systems, which are now displacing the old technology in many areas. High-power fiber laser...... laser system. We present the latest advancements within airclad fiber technology including a new 70 μm single-mode polarization-maintaining rod-type fiber capable of amplifying to MW power levels. Furthermore we describe the novel airclad based pump combiners and their use in a completely monolithic 350...... W CW fiber laser system with an M2 of less than 1.1. Finally, we briefly touch upon the subject of photo darkening and its origin....

  18. Polymer optical fiber fuse

    CERN Document Server

    Mizuno, Yosuke; Tanaka, Hiroki; Nakamura, Kentaro

    2013-01-01

    Although high-transmission-capacity optical fibers are in demand, the problem of the fiber fuse phenomenon needs to be resolved to prevent the destruction of fibers. As polymer optical fibers become more prevalent, clarifying their fuse properties has become important. Here, we experimentally demonstrate a fuse propagation velocity of 21.9 mm/s, which is 1 to 2 orders of magnitude slower than that in standard silica fibers. The achieved threshold power density and proportionality constant between the propagation velocity and the power density are respectively 1/186 of and 16.8 times the values for silica fibers. An oscillatory continuous curve instead of periodic voids is formed after the passage of the fuse. An easy fuse termination method is presented herein, along with its potential plasma applications.

  19. Airclad fiber laser technology

    DEFF Research Database (Denmark)

    Hansen, Kim P.; Olausson, Christina Bjarnal Thulin; Broeng, Jes

    2008-01-01

    High-power fiber lasers and amplifiers have gained tremendous momentum in the last five years, and many of the traditional manufactures of gas and solid-state lasers are pursuing the attractive fiber-based systems, which are now displacing the old technology in many areas. High-power fiber laser...... laser system. We present the latest advancements within airclad fiber technology including a new 70 μm single-mode polarization-maintaining rod-type fiber capable of amplifying to MW power levels. Furthermore we describe the novel airclad based pump combiners and their use in a completely monolithic 350...... W CW fiber laser system with an M2 of less than 1.1. Finally, we briefly touch upon the subject of photo darkening and its origin....

  20. Airclad fiber laser technology

    DEFF Research Database (Denmark)

    Hansen, Kim P.; Olausson, Christina Bjarnal Thulin; Broeng, Jes

    2011-01-01

    High-power fiber lasers and amplifiers have gained tremendous momentum in the last 5 years. Many of the traditional manufacturers of gas and solid-state lasers are now pursuing the fiber-based systems, which are displacing the conventional technology in many areas. High-power fiber laser systems...... laser system. We present the latest advancements within airclad fiber technology including a new 100 m single-mode polarization-maintaining rod-type fiber capable of amplifying to megawatt power levels. Furthermore, we describe the novel airclad-based pump combiners and their use in a completely...... monolithic 350 W cw fiber laser system with an M2 of less than 1.1. © 2011 Society of Photo-Optical Instrumentation Engineers (SPIE)....