FAST-GROWING COMPANIES FROM TIMIS COUNTRY: DOES THE AGE MATTER?

Directory of Open Access Journals (Sweden)

ALB MARIA

2015-03-01

Full Text Available This paper examines the relation between the company’s age and its growth and analyses the influence of age on growth by studying a specific group of companies, namely fast-growing companies from the Timis County, Romania. We have studied the performance of the fast-growing companies in the period of 2010-2013 using the STATA IC 12 software application. A linear regression analysis model with two variables was used. The dependent variable used was the rapid growth of the company, measured by the growth rate of the turnover and the independent variable used was the age of the company, measured by the number of years. The model was tested using the number of employees as a control variable. This paper’s conclusion is in agreement with many other findings from the literature in this subject. The presented results show that the turnover growth rates in the Romanian fast-growing companies tend to drop from one year to another, as the companies grow older.

Differential Macrophage Response to Slow- and Fast-Growing Pathogenic Mycobacteria

Directory of Open Access Journals (Sweden)

A. Cecilia Helguera-Repetto

2014-01-01

Full Text Available Nontuberculous mycobacteria (NTM have recently been recognized as important species that cause disease even in immunocompetent individuals. The mechanisms that these species use to infect and persist inside macrophages are not well characterised. To gain insight concerning this process we used THP-1 macrophages infected with M. abscessus, M. fortuitum, M. celatum, and M. tuberculosis. Our results showed that slow-growing mycobacteria gained entrance into these cells with more efficiency than fast-growing mycobacteria. We have also demonstrated that viable slow-growing M. celatum persisted inside macrophages without causing cell damage and without inducing reactive oxygen species (ROS, as M. tuberculosis caused. In contrast, fast-growing mycobacteria destroyed the cells and induced high levels of ROS. Additionally, the macrophage cytokine pattern induced by M. celatum was different from the one induced by either M. tuberculosis or fast-growing mycobacteria. Our results also suggest that, in some cases, the intracellular survival of mycobacteria and the immune response that they induce in macrophages could be related to their growth rate. In addition, the modulation of macrophage cytokine production, caused by M. celatum, might be a novel immune-evasion strategy used to survive inside macrophages that is different from the one reported for M. tuberculosis.

Phylogenetic affinity of tree shrews to Glires is attributed to fast evolution rate.

Science.gov (United States)

Lin, Jiannan; Chen, Guangfeng; Gu, Liang; Shen, Yuefeng; Zheng, Meizhu; Zheng, Weisheng; Hu, Xinjie; Zhang, Xiaobai; Qiu, Yu; Liu, Xiaoqing; Jiang, Cizhong

2014-02-01

Previous phylogenetic analyses have led to incongruent evolutionary relationships between tree shrews and other suborders of Euarchontoglires. What caused the incongruence remains elusive. In this study, we identified 6845 orthologous genes between seventeen placental mammals. Tree shrews and Primates were monophyletic in the phylogenetic trees derived from the first or/and second codon positions whereas tree shrews and Glires formed a monophyly in the trees derived from the third or all codon positions. The same topology was obtained in the phylogeny inference using the slowly and fast evolving genes, respectively. This incongruence was likely attributed to the fast substitution rate in tree shrews and Glires. Notably, sequence GC content only was not informative to resolve the controversial phylogenetic relationships between tree shrews, Glires, and Primates. Finally, estimation in the confidence of the tree selection strongly supported the phylogenetic affiliation of tree shrews to Primates as a monophyly. Copyright © 2013 Elsevier Inc. All rights reserved.

Cheap heat grows in fields

International Nuclear Information System (INIS)

Haluza, I.

2006-01-01

Slovak farmers resemble the peasants from the film T he Magnificent Seven . They keep complaining about their fate but consider any innovation as an interference. And that is why they still have not started growing fast-growing wood although the number of heating plants processing bio-mass from forests and fields is growing. Natural gas is expensive and coal creates pollution. Energy from biomass is becoming a good business and also creates new business opportunities - growing the raw material it needs. Such heating plants usually use waste from wood processing companies and Slovak Forests (Lesy SR) has also started deliveries of chip wood from old forests. There are plantations of fast growing wood suitable for heat production of over 500-thousand hectares throughout the EU. This is about 10% of Slovakian's area where the first plantations are also already being set up. The first promising plantation project was launched this spring. And this is not a project launched and backed by a big company but a starting up businessman, Miroslav Forgac from Kosice. He founded his company, Forgim, last winter. Without big money involved and thank to a new business idea he managed to persuade farmers to set up the first plantations. He supplied the seedlings and the business has started with 75 ha of plantations around Trnava, Sala, Komarno, Lucenec, Poprad and Kosice. He is gradually signing contracts with other landowners and next year the area of plantations is set to grow by 1500 ha. Plantations of fast growing trees such as willow, poplar and acacia regenerate by new trees growing out of the roots of the old and from cut trees so from one seedling and one investment there can be several harvests. Swedish willows from Forgim regenerate 20 to 25 years after the first planting. And only then new seedlings have to be purchased. Using special machines that even cut the wood to wood chips the plantations can be 'harvested' every three years. Unlike crops, the fields do not

Evaluation of efficient glucose release using sodium hydroxide and phosphoric acid as pretreating agents from the biomass of Sesbania grandiflora (L.) Pers.: A fast growing tree legume.

Science.gov (United States)

Mund, Nitesh K; Dash, Debabrata; Barik, Chitta R; Goud, Vaibhav V; Sahoo, Lingaraj; Mishra, Prasannajit; Nayak, Nihar R

2017-07-01

Sesbania grandiflora (L.) Pers. is one of the fast growing tree legumes having the efficiency to produce around 50tha -1 above ground dry matters in a year. In this study, biomass of 2years old S. grandiflora was selected for the chemical composition, pretreatments and enzymatic hydrolysis studies. The stem biomass with a wood density of 3.89±0.01gmcm -3 contains about 38% cellulose, 12% hemicellulose and 28% lignin. Enzymatic hydrolysis of pretreated biomass revealed that phosphoric acid (H 3 PO 4 ) pretreated samples even at lower cellulase loadings [1 Filter Paper Units (FPU)], could efficiently convert about 86% glucose, while, even at higher cellulase loadings (60FPU) alkali pretreated biomass could convert only about 58% glucose. The effectiveness of phosphoric acid pretreatment was also supported by X-ray diffraction (XRD), field emission scanning electron microscopy (FE-SEM) and Fourier transform infrared spectroscopy (FTIR) analysis. Copyright © 2017 Elsevier Ltd. All rights reserved.

Wood density variation and tree ring distinctness in Gmelina arborea trees by x-ray densitometry

Directory of Open Access Journals (Sweden)

Roger Moya

2009-03-01

Full Text Available Due to its relationship with other properties, wood density is the main wood quality parameter. Modern, accuratemethods such as X-ray densitometry - are applied to determine the spatial distribution of density in wood sections and to evaluatewood quality. The objectives of this study were to determinate the influence of growing conditions on wood density variation andtree ring demarcation of gmelina trees from fast growing plantations in Costa Rica. The wood density was determined by X-raydensitometry method. Wood samples were cut from gmelina trees and were exposed to low X-rays. The radiographic films weredeveloped and scanned using a 256 gray scale with 1000 dpi resolution and the wood density was determined by CRAD and CERDsoftware. The results showed tree-ring boundaries were distinctly delimited in trees growing in site with rainfall lower than 2510 mm/year. It was demonstrated that tree age, climatic conditions and management of plantation affects wood density and its variability. Thespecific effect of variables on wood density was quantified by for multiple regression method. It was determined that tree yearexplained 25.8% of the total variation of density and 19.9% were caused by climatic condition where the tree growing. Wood densitywas less affected by the intensity of forest management with 5.9% of total variation.

Flexural properties of four fast-growing eucalypts woods deteriorated by three different field tests

Directory of Open Access Journals (Sweden)

Rafael de Avila Delucis

2017-02-01

Full Text Available Durability is a wood characteristic determined by several factors, making it difficult to investigate the service life of pieces designated for outdoor use. In this study, the decaying of juvenile and adult woods of four fast-growing eucalypts from southern Brazil subjected to three different exposure environments was monitored through mechanical properties (flexural test. The study material was obtained from adult trees of Eucalyptus botryoides, Corymbia citriodora, Eucalyptus paniculata and Eucalyptus tereticornis. Field tests were conducted in the city of Piratini, southern Brazil, and samplings were carried out during 540 days of experiment. Comparing the four eucalypts, the decreasing order of biological resistance was: Eucalyptus tereticornis, Corymbia citriodora, Eucalyptus paniculata and Eucalyptus botryoides. The mature wood showed greater and more stable physical-mechanical properties than juvenile wood.

Fast-growing Acer rubrum differs from slow-growing Quercus alba in leaf, xylem and hydraulic trait coordination responses to simulated acid rain.

Science.gov (United States)

Medeiros, Juliana S; Tomeo, Nicholas J; Hewins, Charlotte R; Rosenthal, David M

2016-08-01

We investigated the effects of historic soil chemistry changes associated with acid rain, i.e., reduced soil pH and a shift from nitrogen (N)- to phosphorus (P)-limitation, on the coordination of leaf water demand and xylem hydraulic supply traits in two co-occurring temperate tree species differing in growth rate. Using a full-factorial design (N × P × pH), we measured leaf nutrient content, water relations, leaf-level and canopy-level gas exchange, total biomass and allocation, as well as stem xylem anatomy and hydraulic function for greenhouse-grown saplings of fast-growing Acer rubrum (L.) and slow-growing Quercus alba (L.). We used principle component analysis to characterize trait coordination. We found that N-limitation, but not P-limitation, had a significant impact on plant water relations and hydraulic coordination of both species. Fast-growing A. rubrum made hydraulic adjustments in response to N-limitation, but trait coordination was variable within treatments and did not fully compensate for changing allocation across N-availability. For slow-growing Q. alba, N-limitation engendered more strict coordination of leaf and xylem traits, resulting in similar leaf water content and hydraulic function across all treatments. Finally, low pH reduced the propensity of both species to adjust leaf water relations and xylem anatomical traits in response to nutrient manipulations. Our data suggest that a shift from N- to P-limitation has had a negative impact on the water relations and hydraulic function of A. rubrum to a greater extent than for Q. alba We suggest that current expansion of A. rubrum populations could be tempered by acidic N-deposition, which may restrict it to more mesic microsites. The disruption of hydraulic acclimation and coordination at low pH is emphasized as an interesting area of future study. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Engineering a wild fast-growing Mycoplasma bacterium to generate ...

International Development Research Centre (IDRC) Digital Library (Canada)

2018-01-12

Jan 12, 2018 ... The CCPP bacterium causes sick animals to experience severe symptoms ... because antibiotic treatment does not eliminate the responsible bacterium. ... To develop a fast growing CCPP vaccine for cheaper production and ...

Fostering and sustaining innovation in a Fast Growing Agile Company

OpenAIRE

Moe, NilsBrede; Barney, Sebastian; Aurum, Aybüe; Khurum, Mahvish; Wohlin, Claes; Barney, Hamish; Gorschek, Tony; Winata, Martha

2012-01-01

Sustaining innovation in a fast growing software development company is difficult. As organisations grow, peoples' focus often changes from the big picture of the product being developed to the specific role they fill. This paper presents two complementary approaches that were successfully used to support continued developer-driven innovation in a rapidly growing Australian agile software development company. The method "FedEx TM Day" gives developers one day to showcase a proof of concept th...

VHDL Implementation of a Fast Adder Tree

OpenAIRE

Dacheng, Chen

2005-01-01

This thesis discusses the design and implementation of a VHDL generator for Wallace tree with (3:2) counter modules and (2:2) counter modules to solve fast addition problem. The basic research has been carried out by MATLAB programming environment and automatic generation of VHDL file based on the result obtained from MATLAB simulation. MODELSIM has been used for compilation and simulation of the VHDL file.

Slow growth rates of Amazonian trees: Consequences for carbon cycling

Science.gov (United States)

Vieira, Simone; Trumbore, Susan; Camargo, Plinio B.; Selhorst, Diogo; Chambers, Jeffrey Q.; Higuchi, Niro; Martinelli, Luiz Antonio

2005-01-01

Quantifying age structure and tree growth rate of Amazonian forests is essential for understanding their role in the carbon cycle. Here, we use radiocarbon dating and direct measurement of diameter increment to document unexpectedly slow growth rates for trees from three locations spanning the Brazilian Amazon basin. Central Amazon trees, averaging only ≈1mm/year diameter increment, grow half as fast as those from areas with more seasonal rainfall to the east and west. Slow growth rates mean that trees can attain great ages; across our sites we estimate 17-50% of trees with diameter >10 cm have ages exceeding 300 years. Whereas a few emergent trees that make up a large portion of the biomass grow faster, small trees that are more abundant grow slowly and attain ages of hundreds of years. The mean age of carbon in living trees (60-110 years) is within the range of or slightly longer than the mean residence time calculated from C inventory divided by annual C allocation to wood growth (40-100 years). Faster C turnover is observed in stands with overall higher rates of diameter increment and a larger fraction of the biomass in large, fast-growing trees. As a consequence, forests can recover biomass relatively quickly after disturbance, whereas recovering species composition may take many centuries. Carbon cycle models that apply a single turnover time for carbon in forest biomass do not account for variations in life strategy and therefore may overestimate the carbon sequestration potential of Amazon forests. PMID:16339903

Wood anatomy and physical and chemical properties of fast growing Athel tamarisk (Tamarix aphylla L.

Directory of Open Access Journals (Sweden)

Reza oladi

2017-02-01

Full Text Available Athel tamarisk (Tamarix aphylla is a fast growing, evergreen tree succeeding in the most soils and can tolerate the saline conditions. Despite its ecological importance and wide distribution in central and southern parts of Iran, wood properties of this species has little been concerned. However, the potential of this species in cellulosic industries of Middle East dry countries has recently been focused. Hence, to study wood anatomy and physical and chemical properties of Athel tamarisk, 3 stands were selected and felled from the Zabol region (Sistan and Baluchestan province. Wood anatomical features of this species were studied and listed according to the list of microscopic features for hardwood identification by IAWA Committee. In addition, lignin distribution in xylem was studied using fluorescence microscopy. Calculating fiber biometry features assessed that although fiber quality is not perfect but meets the standards of paper production, comparing other commercially used hardwoods in this industry. According to chemical composition analysis, cellulose content of this wood is rather low (39% which could be a result of large amount of thin-walled paranchyma cells in xylem. Lignin content is a bit higher than average hardwoods and this component is concentrated in vessels and fibers. Physical properties of studied wood samples (specific gravity and shrinkage values were in the range of other light-weight and fast growing hardwoods and thus this wood is expected to have similar end-use quality.

Gene expression profiling of fast- and slow- growing gonadotroph non-functioning pituitary adenomas

DEFF Research Database (Denmark)

Falch, Camilla Maria; Sundaram, Arvind Y M; Øystese, Kristin Astrid

2018-01-01

Objective Reliable biomarkers associated with aggressiveness of non-functioning gonadotroph adenomas (GAs) are lacking. As the growth of tumor remnants is highly variable, molecular markers for growth potential prediction are necessary. We hypothesized that fast- and slow - growing GAs present......, GPM6A and six EMT-related genes (SPAG9, SKIL, MTDH, HOOK1, CNOT6L and PRKACB). MTDH, but not EMCN, demonstrated involvement in cell migration and association with EMT-markers. Conclusions Fast- and slow- growing GAs present different gene expression profiles and genes related to EMT have higher...... expression in fast-growing tumors. In addition to MTDH, identified as an important contributor to aggressiveness, the other genes might represent markers for tumor growth potential and possible targets for drug therapy. ....

A Very Fast and Angular Momentum Conserving Tree Code

International Nuclear Information System (INIS)

Marcello, Dominic C.

2017-01-01

There are many methods used to compute the classical gravitational field in astrophysical simulation codes. With the exception of the typically impractical method of direct computation, none ensure conservation of angular momentum to machine precision. Under uniform time-stepping, the Cartesian fast multipole method of Dehnen (also known as the very fast tree code) conserves linear momentum to machine precision. We show that it is possible to modify this method in a way that conserves both angular and linear momenta.

A Very Fast and Angular Momentum Conserving Tree Code

Energy Technology Data Exchange (ETDEWEB)

Marcello, Dominic C., E-mail: dmarce504@gmail.com [Department of Physics and Astronomy, and Center for Computation and Technology Louisiana State University, Baton Rouge, LA 70803 (United States)

2017-09-01

There are many methods used to compute the classical gravitational field in astrophysical simulation codes. With the exception of the typically impractical method of direct computation, none ensure conservation of angular momentum to machine precision. Under uniform time-stepping, the Cartesian fast multipole method of Dehnen (also known as the very fast tree code) conserves linear momentum to machine precision. We show that it is possible to modify this method in a way that conserves both angular and linear momenta.

Fast Image Texture Classification Using Decision Trees

Science.gov (United States)

Thompson, David R.

2011-01-01

Texture analysis would permit improved autonomous, onboard science data interpretation for adaptive navigation, sampling, and downlink decisions. These analyses would assist with terrain analysis and instrument placement in both macroscopic and microscopic image data products. Unfortunately, most state-of-the-art texture analysis demands computationally expensive convolutions of filters involving many floating-point operations. This makes them infeasible for radiation- hardened computers and spaceflight hardware. A new method approximates traditional texture classification of each image pixel with a fast decision-tree classifier. The classifier uses image features derived from simple filtering operations involving integer arithmetic. The texture analysis method is therefore amenable to implementation on FPGA (field-programmable gate array) hardware. Image features based on the "integral image" transform produce descriptive and efficient texture descriptors. Training the decision tree on a set of training data yields a classification scheme that produces reasonable approximations of optimal "texton" analysis at a fraction of the computational cost. A decision-tree learning algorithm employing the traditional k-means criterion of inter-cluster variance is used to learn tree structure from training data. The result is an efficient and accurate summary of surface morphology in images. This work is an evolutionary advance that unites several previous algorithms (k-means clustering, integral images, decision trees) and applies them to a new problem domain (morphology analysis for autonomous science during remote exploration). Advantages include order-of-magnitude improvements in runtime, feasibility for FPGA hardware, and significant improvements in texture classification accuracy.

Grow--a computer subroutine that projects the growth of trees in the Lake States' forests.

Science.gov (United States)

Gary J. Brand

1981-01-01

A computer subroutine, Grow, has been written in 1977 Standard FORTRAN to implement a distance-independent, individual tree growth model for Lake States' forests. Grow is a small and easy-to-use version of the growth model. All the user has to do is write a calling program to read initial conditions, call Grow, and summarize the results.

Leaf protein and mineral concentrations across the "miracle tree" genus Moringa

Science.gov (United States)

The moringa tree Moringa oleifera is a fast-growing, drought-resistant tree cultivated across the lowland dry tropics worldwide for its nutritious leaves. Despite its nutritious reputation, there has been no systematic survey of the variation in leaf nutritional quality across M. oleifera grown worl...

APPLICATION OF SOMACLONAL VARIABILITY TO PRODUCTION OF FAST-GROWING TREES AS A RAW MATERIAL FOR BIOFUEL

Directory of Open Access Journals (Sweden)

Voinikov V.K.

2012-08-01

Full Text Available Wood is one of the most widespread materials on the Earth. Wood raw materials may be used either to generate energy directly or to produce biofuel. The demand for sufficient amount of wood for these purposes necessitated establishment of arboreal plantations. Poplar тополь (Populus sp. is the most promising object to produce wood from plantations. In the last few years the Institute has been involved in the studies of potential of somaclonal variability in tissue cultivars to select plants with high growth indices. Berlin polar (P. × berolinensis, has been selected for this purpose, as its pyramid-shaped crown allows to place more plants on a plantation square area unit. It easily propagates by grafts and coppice shoots and is fairly resistant to leaf rust. Fast-growing trees may be acquired due to somaclonal variability and genetic transformation. In both cases an indispensable preliminary condition is a well-tested protocol of acquiring regenerates and their propagation in the cultivar of isolated tissues. Such a protocol has been worked out by now. It comprises the following phases: 1 isolation of stem tops in the first half of summer ant their sterilization; 2 cutting of explantates and their cultivation on the medium to induce regeneration; 3 propagation of regenerates on propagation medium; 4 elongation of regenerants; 5 rooting of regenerants; 6 acclimation and transfer of plants to the field for growth. At phases 3, 4 and 5 plants with desirable somaclonal changes are selected. Somaclonal varieties are selected on the basis of a large number of regenerants. For their further growth prior to planting on the Institute test site hydroponic units installed at the artificial climate station are used. This ensures equal conditions of nutrition and moisturizing for all the regenerants planted. Little plants cultivated in vitro, which are acquired at this stage of the work, will be further used for genetic transformation. A gene

Application of objective provision tree to development of standard review plan for sodium-cooled fast reactor nuclear design

Energy Technology Data Exchange (ETDEWEB)

Bae, Moo-Hoon; Suh, Namduk; Choi, Yongwon; Shin, Andong [Korea Institute of Nuclear Safety, Daejon (Korea, Republic of)

2016-06-15

A systematic methodology was developed for the standard review plan for sodium-cooled fast reactor nuclear design. The process is first to develop an objective provision tree of sodium-cooled fast reactor for the reactivity control safety function. The provision tree is generally developed by designer to confirm whether the design satisfies the defense-in-depth concept. Then applicability of the current standard review plan of nuclear design for light water reactor to sodium-cooled fast reactor was evaluated and complemented by the developed objective provision tree.

Phosphorus dynamics and limitation of fast- and slow-growing temperate seaweeds in Oslofjord, Norway

DEFF Research Database (Denmark)

Pedersen, Morten Foldager; Borum, Jens; Fotel, Frank Leck

2010-01-01

During coastal eutrophication, fast-growing, ephemeral macroalgae bloom at the expense of slow-growing, perennial macroalgae. This change in community composition has been explained by a differential ability to exploit and utilize inorganic nitrogen among macroalgae with different growth strategies......-growing algae (Ulva and Ceramium) took up dissolved inorganic P (DIP) much faster than thicker, slower growing species (belonging to Fucus, Ascophyllum and Laminaria) but also had much higher P-demands per unit biomass and time. DIP concentrations in the Oslofjord were low from April through August, and fast......-growing species were unable to meet their P-demand from uptake for several months during summer. Hence, Ceramium and Ulva were potentially P-limited during summer, whereas Ascophyllum and Laminaria were able to acquire sufficient external DIP to remain P-replete throughout the year. Storage of P prevented Fucus...

FMECA application to Rainfall Hazard prevention in olive trees growings

Science.gov (United States)

Buendia-Buendía, F. S.; Bermudez, R.; Tarquis, A. M.; Andina, D.

2010-05-01

The FMECA (Failure Mode Effects and Criticality Analysis) is a broadly extended System Safety tool applied in industries as Aerospace in order to prevent hazards. This methodology studies the different failure modes of a system and try to mitigate them in a systematic procedure. In this paper this tool is applied in order to mitigate economical impact hazards derived from Rainfalls to olive trees growing in Granada (Spain), understanding hazard from the System Safety perspective (Any real or potential condition that can cause injury, illness, or death to personnel; damage to or loss of a system, equipment or property; or damage to the environment). The work includes a brief introduction to the System Safety and FMECA methodologies, applying then these concepts to analyze the Olive trees as a system and identify the hazards during the different stages of the whole life cycle plant production.

Inverse modeling and animation of growing single-stemmed trees at interactive rates

Science.gov (United States)

S. Rudnick; L. Linsen; E.G. McPherson

2007-01-01

For city planning purposes, animations of growing trees of several species can be used to deduce which species may best fit a particular environment. The models used for the animation must conform to real measured data. We present an approach for inverse modeling to fit global growth parameters. The model comprises local production rules, which are iteratively and...

Compartmentalization: a conceptual framework for understanding how trees grow and defend themselves

Science.gov (United States)

Alex L. Shigo

1984-01-01

The purpose of this chapter is to describe a conceptual framework for understanding how trees grow and how they and other perennial plants defend themselves. The concept of compartmentalization has developed over many years, a synthesis of ideas from a number of investigators. It is derived from detailed studies of the gross morphology and cellular anatomy of the wood...

Fast and frugal trees: translating population-based pharmacogenomics to medication prioritization

NARCIS (Netherlands)

Rooij, T. van; Roederer, M.; Wareham, H.T.; Rooij, I.J.E.I. van; McLeod, H.L.; Marsh, S.

2015-01-01

Aim: Fast and frugal decision trees (FFTs) can simplify clinical decision making by providing a heuristic approach to contextual guidance. We wanted to use FFTs for pharmacogenomic knowledge translation at point-of-care. Materials & Methods: The Pharmacogenomics for Every Nation Initiative (PGENI),

How fast do eels grow

International Nuclear Information System (INIS)

Hansen, H.J.M.

1988-01-01

Not so very much about the growth pattern of the eel is known yet. Eels move about nearly all the time. They are thus very difficult to follow and we do not, for examble, yet know how long it actually takes for them to grow to maturity in the wild. So far, a macroscopic analysis of the number of bright and dark areas (growth rings) in the 'earstones' has been used to determine eel age, but this method was recently challenged. Use of radioisotopes has been suggested previously for this purpose. For this present study the rare earth elements, europium-152 and europium-155 are used. When incubated in artificial sea water, a satisfactory final radioactive label was achieved. Two experiments were planned in collaboration with the Swedish Environmental Protection Agency. 2000 Elvers were set out in 1982, in the cooling water outlet of the Oskarshamn nuclear power plant, each marked with europium-155. In 1984 another 10 000 elvers labelled with europium-152 were set out under similar conditions. The idea was mainly to see how fast the eels would grow, and to compare their known age with that determined by examining the earstones. Results showed that there was no clear-cut correlation between actual eel age and the biological age determination used so far. During four years, only 10 of the original 1300 eels were recaptured. It is thus hard to say anything definite from our results on the viability of setting out elvers in the environment

Wood density variation in Gmelina arborea trees using X-ray densitometry

International Nuclear Information System (INIS)

Roque, Roger Moya; Tomazello, Mario

2005-01-01

The wood density constitutes the main wood quality parameter by its relationship with anatomical, physical and chemical properties and wood utilization. The modern and accurate methods - like X-ray densitometry - are applied to determine the density spatial distribution in wood sections and pith-bark direction. On the other hand, emphasis to wood utilization from fast growing plantations, like Gmelina arborea in Costa Rica, has been done. The objectives of this study were to determinate the influence of 2 climatic conditions of Costa Rica on radial wood density variation of gmelina trees form fast growing plantations using the X-ray densitometry method. Wood samples were cut at DBH of gmelina trees and transversal thin laths were selected at north-south direction and conditioned at 12% moisture content equilibrium and X-rayed. The radiographic films were revealed and scanned a 256 gray scale with 1000 dpi resolution and the intra tree-ring density were determined by CRAD and CERD software. The results demonstrated that the climatic and forest management affects the wood density variability and the distinctness of tree-ring boundaries of gmelina trees, as well as, the applicability of X-ray densitometry in wood quality analysis. (author)

The variation of methane flux rates from boreal tree species at the beginning of the growing season

Science.gov (United States)

Haikarainen, Iikka; Halmeenmäki, Elisa; Machacova, Katerina; Pihlatie, Mari

2016-04-01

Boreal forests are considered as net sink for atmospheric methane (CH4) because of the CH4 oxidizing bacteria in the aerobic soil layer. However, within the last decades it has become more evident that trees play an important role in the global CH4 budget by offering pathways for anaerobically produced CH4 from deeper soil layers to the atmosphere. Furthermore, trees may also act as independent sources of CH4. To confirm magnitude, variability and the origin of the tree mediated CH4 emissions more research is needed, especially in boreal forests which have been in a minority in such investigation. We measured tree stem and shoot CH4 exchange of three boreal tree species at the beginning of the growing season (13.4.-13.6.2015) at SMEAR II station in Hyytiälä, located in southern Finland (61° 51'N, 24° 17'E, 181 asl). The fluxes were measured from silver birch (Betula pendula), downy birch (B. pubescens) and Norway spruce (Picea abies) on two sites with differing soil type and characteristics (paludified and mineral soil), vegetation and forest structure by using the static chamber technique. Scaffold towers were used for measurements at multiple stem heights and shoots. The aim was to study the vertical profile of CH4 fluxes at stem and shoot level and compare these fluxes among the studied species, and to observe temporal changes in CH4 flux over the beginning of the growing season. We found that all the trees emitted CH4 from their stems and shoots. Overall, the birches showed higher emissions compared to the spruces. The emission rates were considerably larger in the lower parts of the birch stems than upper parts, and these emissions increased during the growing season. The spruces had more variation in the stem CH4 flux, but the emission rates of the upper parts of the stem exceeded the birch emissions at the same height. The shoot fluxes of all the studied trees indicated variable CH4 emissions without a clear pattern regarding the vertical profile and

PhySortR: a fast, flexible tool for sorting phylogenetic trees in R.

Science.gov (United States)

Stephens, Timothy G; Bhattacharya, Debashish; Ragan, Mark A; Chan, Cheong Xin

2016-01-01

A frequent bottleneck in interpreting phylogenomic output is the need to screen often thousands of trees for features of interest, particularly robust clades of specific taxa, as evidence of monophyletic relationship and/or reticulated evolution. Here we present PhySortR, a fast, flexible R package for classifying phylogenetic trees. Unlike existing utilities, PhySortR allows for identification of both exclusive and non-exclusive clades uniting the target taxa based on tip labels (i.e., leaves) on a tree, with customisable options to assess clades within the context of the whole tree. Using simulated and empirical datasets, we demonstrate the potential and scalability of PhySortR in analysis of thousands of phylogenetic trees without a priori assumption of tree-rooting, and in yielding readily interpretable trees that unambiguously satisfy the query. PhySortR is a command-line tool that is freely available and easily automatable.

Carcass traits and meat quality of different slow growing and fast growing broiler chickens

Directory of Open Access Journals (Sweden)

M. Oblakova

2017-12-01

dry matter higher percentage was associated with better lavor of meat. The analysis of the effect of genotype on meat protein content showed that protein content was the highest in the breast of slow-growing chickens from group III- 24.89% and lowest in the breast meat of conventional broilers from group V – 23.86% (p<0.05. In the other 3 groups, it ranged from 24.55 to 24.59%. The protein content of thighs was the lowest in slow-growing birds from group I- 19.49%, and the difference was the highest when compared to groups II and III, also slow-growing (p<0.05. With respect to the thigh fat content, it was the highest in slow-growing chickens from group IV (5.84%, followed by fast-growing from group V (5.33% and the lowest- in slow-growing birds from group І – 4.12% (p<0.05. The analysis of data showed a statistically significant effect of the sex on water content (p<0.001, fat (p<0.001 and ash (p<0.01. In males, thigh meat contained water and ash and in females more fat. The interaction of genotype and sex effects were important for thigh meat fat content, with highest values in fast-growing females from group V – 5.98% and lowest in slowly growing males from group I – 3.88% (p<0.001. Weak but statistically significant interaction between both factors was found with respect to thigh protein and ash (p<0.05. The highest protein content was established in slow-growing females from group IV (19.81%, whereas thigh ash was with highest percentage in slow-growing males from group II (1.11%

Assessing the Significance of Above- and Belowground Carbon Allocation of Fast- and Slow-Growing Families of Loblolly Pine - Final Report

Energy Technology Data Exchange (ETDEWEB)

Topa, M. A.; Weinstein, D. A.; Retzlaff, W. A.

2001-03-01

During this project we experimentally evaluated the below-ground biomass and carbon allocation and partitioning of four different fast- and slow-growing families of loblolly pine located in Scotland County, NC, in an effort to increase the long-term performance of the crop. The trees were subjected to optimal nutrition and control since planting in 1993. Destructive harvests in 1998 and 2000 were used for whole?plant biomass estimates and to identify possible family differences in carbon acquisition (photosynthesis) and water use efficiency. At regular intervals throughout each year we sampled tissues for carbohydrate analyses to assess differences in whole-tree carbon storage. Mini rhizotron observation tubes were installed to monitor root system production and turnover. Stable isotope analysis was used to examine possible functional differences in water and nutrient acquisition of root systems between the various families. A genetic dissection of root ontogenic and architectural traits, including biomass partitioning, was conducted using molecular markers to better understand the functional implications of these traits on resource acquisition and whole-plant carbon allocation.

Three-year study of fast-growing trees in degraded soils amended with composts: Effects on soil fertility and productivity.

Science.gov (United States)

Madejón, Paula; Alaejos, Joaquin; García-Álbala, José; Fernández, Manuel; Madejón, Engracia

2016-03-15

Currently, worries about the effects of intensive plantations on long-term nutrient supply and a loss of productivity have risen. In this study two composts were added to degraded soils where this type of intensive crops were growing, to avoid the soil fertility decrease and try to increase biomass production. For the experiment, two degraded soils in terms of low organic carbon content and low pH were selected in South-West Spain: La Rábida (RA) and Villablanca (VI) sites. Both study sites were divided into 24 plots. In RA, half of the plots were planted with Populus x canadensis "I-214"; the other half was planted with Eucalyptus globulus. At the VI site, half of the plots were planted with Paulownia fortunei, and the other plots were planted with Eucalyptus globulus. For each tree and site, three treatments were established (two organic composts and a control without compost), with four replications per treatment. The organic amendments were "alperujo" compost, AC, a solid by-product from the extraction of olive oil, and BC, biosolid compost. During the three years of experimentation, samples of soils and plants were analyzed for studying chemical and biochemical properties of soil, plant growth and plant nutritional status and biomass production. The composts increased total organic carbon, water-soluble carbon, nutrients and pH of soil only in the most acidic soil. Soil biochemical quality was calculated with the geometric mean of the enzymatic activities (Dehydrogenase, β-glucosidase, Phosphatase and Urease activities) determined in soils. The results showed a beneficial improvement in comparison with soils without compost. However, the best results were found in the growth and biomass production of the studied trees, especially in Eucalyptus. Nutritional levels of leaves of the trees were, in general, in the normal established range for each species, although no clear effect of the composts was observed. The results of this study justify the addition of

An overview of industrial tree plantation conflicts in the global South: conflicts, trends, and resistance struggles

NARCIS (Netherlands)

W. Overbeek (Wilfridus); M. Kröger (Markus); J. Gerber (Julien-François)

2012-01-01

markdownabstractOver the past two decades, industrial tree plantations (ITPs), typically large-scale, intensively managed, even-age monoculture plantations, mostly exotic trees like fast-growing eucalyptus, pine and acacia species, but also rubber and oil palm, all destined for industrial processe s

Growing Greener Cities: A Tree-Planting Handbook.

Science.gov (United States)

Moll, Gary; Young, Stanley

This step-by-step guide, developed by the Global ReLeaf organization, presents tree-planting advice and simple steps to organizing a successful community tree-planting and tree-care program. The text is divided into three parts. Part 1 introduces trees and discusses the role they play as components of the living urban environment. Distinctions are…

Plant diversity and energy potency of community forest in East Kalimantan, Indonesia: Searching for fast growing wood species for energy production

Directory of Open Access Journals (Sweden)

RUDIANTO AMIRTA

2016-05-01

Full Text Available Abstract. Amirta R, Yuliansyah, Angi EM, Ananto BR, Setiyono B, Haqiqi MT, Septiana HA, Lodong M, Oktavianto RN. 2016. Plant diversity and energy potency of community forest in East Kalimantan, Indonesia: Searching for fast growing wood species for energy production. Nusantara Bioscience 8: 22-30. Nowadays, there is an increasing interest in intensifying the production and use of biomass to replace fossil fuels for the production of heat and electricity, especially for a remote area that generally abundance with the wood biomass resources including in East Kalimantan, Indonesia. In this work, diversity of plant species that commonly growth in community forest area of East Kutai District, East Kalimantan, Indonesia had been studied to point out their energy potency to be used as biomass feedstock for the electricity generated. Diversity of plant species in the community forest was evaluated by making 13 sampling plots with 20mx20m size approximately. Concurently, the energy properties of plant biomass such as proximate and ultimate compositions were also analyzed using ASTM methods. Results showed that more than 30 species of tropical trees and wood shrubs were grown in the community forest. The presence of them was classified into two different growth of origins: natural and artificial plantation, and also three different categories of plant resources: tree species from logged over forest, commercial fast growing plant tree species for the fiber production and woody shrubs. The highest dominancy and productivity was found in Paraserianthes falcataria (L. Nielsen since the wood biomass was artificially planted for the commercial purposes. Among the 31 plant species analyzed we found the highest energy potency was obtained from Cratoxylum cochinchinense (Lour. Blume that produced 3.17 MWh/ton, and the lowest was from Trema orientalis (L. Blume 0.97 MWh/ton. The woody shrubs species such as Vernonia amigdalina Delile., Piper aduncum L., Gliricidia

Tree root intrusion in sewer systems: A review of extent and costs

Science.gov (United States)

T.B. Randrup; E.G. McPherson; L.R. Costello

2001-01-01

Interference between trees and sewer systems is likely to occur in old systems and in cracked pipes. Factors that contribute to damage include old pipes with joints, shallow pipes, small-dimension pipes, and fast-growing tree species. Because roots are reported to cause >50% of all sewer blockages, costs associated with root removal from sewers is substantial. In...

MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation.

Science.gov (United States)

Hoang, Diep Thi; Vinh, Le Sy; Flouri, Tomáš; Stamatakis, Alexandros; von Haeseler, Arndt; Minh, Bui Quang

2018-02-02

The nonparametric bootstrap is widely used to measure the branch support of phylogenetic trees. However, bootstrapping is computationally expensive and remains a bottleneck in phylogenetic analyses. Recently, an ultrafast bootstrap approximation (UFBoot) approach was proposed for maximum likelihood analyses. However, such an approach is still missing for maximum parsimony. To close this gap we present MPBoot, an adaptation and extension of UFBoot to compute branch supports under the maximum parsimony principle. MPBoot works for both uniform and non-uniform cost matrices. Our analyses on biological DNA and protein showed that under uniform cost matrices, MPBoot runs on average 4.7 (DNA) to 7 times (protein data) (range: 1.2-20.7) faster than the standard parsimony bootstrap implemented in PAUP*; but 1.6 (DNA) to 4.1 times (protein data) slower than the standard bootstrap with a fast search routine in TNT (fast-TNT). However, for non-uniform cost matrices MPBoot is 5 (DNA) to 13 times (protein data) (range:0.3-63.9) faster than fast-TNT. We note that MPBoot achieves better scores more frequently than PAUP* and fast-TNT. However, this effect is less pronounced if an intensive but slower search in TNT is invoked. Moreover, experiments on large-scale simulated data show that while both PAUP* and TNT bootstrap estimates are too conservative, MPBoot bootstrap estimates appear more unbiased. MPBoot provides an efficient alternative to the standard maximum parsimony bootstrap procedure. It shows favorable performance in terms of run time, the capability of finding a maximum parsimony tree, and high bootstrap accuracy on simulated as well as empirical data sets. MPBoot is easy-to-use, open-source and available at http://www.cibiv.at/software/mpboot .

Tree Size Comparison of Some Important Street Trees Growing at ...

African Journals Online (AJOL)

PROF HORSFALL

More research is needed on these trees for healthy environment of city. The present ..... use and CO2 emissions from power plants. Environ. Poll. .... Anna. Bot., 65:567-574. Kozlowski, T.T., 1971. Growth and Development of. Trees. Vol. 1.

Metal(loid) allocation and nutrient retranslocation in Pinus halepensis trees growing on semiarid mine tailings

Energy Technology Data Exchange (ETDEWEB)

Parraga-Aguado, Isabel, E-mail: isabel.parraga@upct.es [Universidad Politecnica de Cartagena, Departamento de Ciencia y Tecnología Agraria Paseo Alfonso XIII, Cartagena 48. 30203 (Spain); Querejeta, Jose-Ignacio [Water and Soil Conservation Department, Centro de Edafología y Biología Aplicada del Segura CEBAS-CSIC Campus Universitario de Espinardo, PO Box 164, Espinardo-Murcia ES-30100 (Spain); González-Alcaraz, María Nazaret; Conesa, Hector M. [Universidad Politecnica de Cartagena, Departamento de Ciencia y Tecnología Agraria Paseo Alfonso XIII, Cartagena 48. 30203 (Spain)

2014-07-01

The goal of this study was to evaluate internal metal(loid) cycling and the risk of metal(loid) accumulation in litter from Pinus halepensis trees growing at a mine tailing disposal site in semiarid Southeast Spain. Internal nutrient retranslocation was also evaluated in order to gain insight into the ability of pine trees to cope with the low-fertility soil conditions at the tailings. We measured metal(loid) concentrations in the foliage (young and old needles), woody stems and fresh leaf litter of pine trees growing on tailings. The nutrient status and stable isotope composition of pine foliage (δ{sup 13}C, δ{sup 15}N, δ{sup 18}O as indicators of photosynthesis and water use efficiency) were also analyzed. Tailing soil properties in vegetation patches and in adjacent bare soil patches were characterized as well. Significant amounts of metal(loid)s such us Cd, Cu, Pb and Sb were immobilized in the woody stems of Pinus halepensis trees growing on tailings. Leaf litterfall showed high concentrations of As, Cd, Sb, Pb and Zn, which thereby return to the soil. However, water extractable metal(loid) concentrations in tailing soils were similar between vegetation patches (mineral soil under the litter layer) and bare soil patches. The pines growing on mine tailings showed very low foliar P concentrations in all leaf age classes, which suggests severe P deficiency. Young (current year) needles showed lower accumulation of metal(loid)s, higher nutrient concentrations (P and K), and higher water use efficiency (as indicated by and δ{sup 13}C and δ{sup 18}O data) than older needles. Substantial nutrient resorption occurred before leaf litterfall, with 46% retranslocation efficiency for P and 89% for K. In conclusion, phytostabilization of semiarid mine tailings with Pinus halepensis is feasible but would require careful monitoring of the trace elements released from litterfall, in order to assess the long term risk of metal(loid) transfer to the food chain

Metal(loid) allocation and nutrient retranslocation in Pinus halepensis trees growing on semiarid mine tailings

International Nuclear Information System (INIS)

Parraga-Aguado, Isabel; Querejeta, Jose-Ignacio; González-Alcaraz, María Nazaret; Conesa, Hector M.

2014-01-01

The goal of this study was to evaluate internal metal(loid) cycling and the risk of metal(loid) accumulation in litter from Pinus halepensis trees growing at a mine tailing disposal site in semiarid Southeast Spain. Internal nutrient retranslocation was also evaluated in order to gain insight into the ability of pine trees to cope with the low-fertility soil conditions at the tailings. We measured metal(loid) concentrations in the foliage (young and old needles), woody stems and fresh leaf litter of pine trees growing on tailings. The nutrient status and stable isotope composition of pine foliage (δ 13 C, δ 15 N, δ 18 O as indicators of photosynthesis and water use efficiency) were also analyzed. Tailing soil properties in vegetation patches and in adjacent bare soil patches were characterized as well. Significant amounts of metal(loid)s such us Cd, Cu, Pb and Sb were immobilized in the woody stems of Pinus halepensis trees growing on tailings. Leaf litterfall showed high concentrations of As, Cd, Sb, Pb and Zn, which thereby return to the soil. However, water extractable metal(loid) concentrations in tailing soils were similar between vegetation patches (mineral soil under the litter layer) and bare soil patches. The pines growing on mine tailings showed very low foliar P concentrations in all leaf age classes, which suggests severe P deficiency. Young (current year) needles showed lower accumulation of metal(loid)s, higher nutrient concentrations (P and K), and higher water use efficiency (as indicated by and δ 13 C and δ 18 O data) than older needles. Substantial nutrient resorption occurred before leaf litterfall, with 46% retranslocation efficiency for P and 89% for K. In conclusion, phytostabilization of semiarid mine tailings with Pinus halepensis is feasible but would require careful monitoring of the trace elements released from litterfall, in order to assess the long term risk of metal(loid) transfer to the food chain. - Highlights: • Significant

A new fast method for inferring multiple consensus trees using k-medoids.

Science.gov (United States)

Tahiri, Nadia; Willems, Matthieu; Makarenkov, Vladimir

2018-04-05

Gene trees carry important information about specific evolutionary patterns which characterize the evolution of the corresponding gene families. However, a reliable species consensus tree cannot be inferred from a multiple sequence alignment of a single gene family or from the concatenation of alignments corresponding to gene families having different evolutionary histories. These evolutionary histories can be quite different due to horizontal transfer events or to ancient gene duplications which cause the emergence of paralogs within a genome. Many methods have been proposed to infer a single consensus tree from a collection of gene trees. Still, the application of these tree merging methods can lead to the loss of specific evolutionary patterns which characterize some gene families or some groups of gene families. Thus, the problem of inferring multiple consensus trees from a given set of gene trees becomes relevant. We describe a new fast method for inferring multiple consensus trees from a given set of phylogenetic trees (i.e. additive trees or X-trees) defined on the same set of species (i.e. objects or taxa). The traditional consensus approach yields a single consensus tree. We use the popular k-medoids partitioning algorithm to divide a given set of trees into several clusters of trees. We propose novel versions of the well-known Silhouette and Caliński-Harabasz cluster validity indices that are adapted for tree clustering with k-medoids. The efficiency of the new method was assessed using both synthetic and real data, such as a well-known phylogenetic dataset consisting of 47 gene trees inferred for 14 archaeal organisms. The method described here allows inference of multiple consensus trees from a given set of gene trees. It can be used to identify groups of gene trees having similar intragroup and different intergroup evolutionary histories. The main advantage of our method is that it is much faster than the existing tree clustering approaches, while

The Risk of Growing Fast: Does fast growth have a negative impact on the survival rates of firms?

NARCIS (Netherlands)

Zhou, Haibo; van der Zwan, Peter; de Kok, Jan; Hartog, Chantal

2012-01-01

Fast-growing firms are considered as the central drivers of job creation in the economy. There is an abundance of literature on the separate subjects of firm growth and firm survival. However, the relationship between survival and growth is neglected. Using the Dutch Longitudinal Enterprise Database

Growing the urban forest: tree performance in response to biotic and abiotic land management

Science.gov (United States)

Emily E. Oldfield; Alexander J. Felson; D. S. Novem Auyeung; Thomas W. Crowther; Nancy F. Sonti; Yoshiki Harada; Daniel S. Maynard; Noah W. Sokol; Mark S. Ashton; Robert J. Warren; Richard A. Hallett; Mark A. Bradford

2015-01-01

Forests are vital components of the urban landscape because they provide ecosystem services such as carbon sequestration, storm-water mitigation, and air-quality improvement. To enhance these services, cities are investing in programs to create urban forests. A major unknown, however, is whether planted trees will grow into the mature, closed-canopied forest on which...

The Commercial Profitability of Growing Hybrid Eucalyptus Clones in The Coast Province, Kenya

Directory of Open Access Journals (Sweden)

Balozi Bekuta Kirongo

2014-04-01

Full Text Available Due to the current high demand for timber, fuelwood, and building poles and the realization that tree growing may pay dividends in the short and long term, many farmers are planting trees on their farms. Farmers are increasingly planting eucalyptus partly due to the fast growth rates of the hybrid clones as well as the opportunity to earn money within a short time. In this paper we report on the profitability of growing eucalyptus hybrid clones in the coastal region, Kenya. Tree growth and cost data was sourced from farmers in Malindi, Kilifi, and Msambweni. Market information was sourced from hardwares in North and South Coast while tree growth models were used to provide average tree sizes at various ages. Results showed that a farmer could make a net income of upto Kshs.500,000.00 (USD6,250 in 5 years. Farmers in the South Coast (Kwale and Msambweni spent more on transport than their counterparts in the North Coast (near Gede-KEFRI. This, added to the fact that trees in the South Coast (Msambweni grew less compared to those in North Coast meant that farmers in the south made less profits.

Reversing a tree regeneration crisis in an endangered ecoregion.

Science.gov (United States)

Fischer, Joern; Stott, Jenny; Zerger, Andre; Warren, Garth; Sherren, Kate; Forrester, Robert I

2009-06-23

Global food demand is growing rapidly. Livestock grazing can provide a valuable source of protein, but conventional grazing is often unsustainable. We studied an 800,000-ha section of a threatened ecoregion in southeastern Australia. Conventional management in the region involves continuous livestock grazing with few rest periods and regular fertilizer application. By using remotely sensed data on tree cover and extensive field data on livestock grazing regimes, soil chemistry, tree diameters, and tree regeneration, we show that the region is facing a tree regeneration crisis. Under conventional management, across the region, millions of hectares of land currently supporting tens of millions of trees will be treeless within decades from now. This would have severe negative ramifications for biodiversity and key ecosystem services, including water infiltration and shade provision for livestock. However, we identified an unexpected win-win solution for tree regeneration and commercial grazing. A relatively new practice in the region is fast-rotational grazing, characterized by prolonged rest periods in between short, intensive grazing events. The probability of regeneration under fast-rotational grazing was up to 4-fold higher than under conventional grazing, and it did not differ significantly from the probability of regeneration in ungrazed areas. In addition, trees were more likely to regenerate where soil nutrient levels were low. These findings suggest that the tree regeneration crisis can be reversed by applying low-input, fast-rotational grazing. New policy settings supporting these practices could signal a turning point for the region, from ecological decline to ecological recovery.

Intraseasonal carbon sequestration and allocation in larch trees growing on permafrost in Siberia after 13C labeling (two seasons of 2013-2014 observation).

Science.gov (United States)

Masyagina, Oxana; Prokushkin, Anatoly; Kirdyanov, Alexander; Artyukhov, Aleksey; Udalova, Tatiana; Senchenkov, Sergey; Rublev, Aleksey

2016-12-01

This research is an attempt to study seasonal translocation patterns of photoassimilated carbon within trees of one of the high latitudes widespread deciduous conifer species Larix gmelinii (Rupr. Rupr). For this purpose, we applied whole-tree labeling by 13 CO 2 , which is a powerful and effective tool for tracing newly developed assimilates translocation to tissues and organs of a tree. Experimental plot has been established in a mature 105-year-old larch stand located within the continuous permafrost area near Tura settlement (Central Siberia, 64°17'13″N, 100°11'55″E, 148 m a.s.l.). Measurements of seasonal photosynthetic activity and foliage parameters (i.e., leaf length, area, biomass, etc.), and sampling were arranged from early growing season (June 8, 2013; May 14, 2014) until yellowing and senescence of needles (September 17, 2013; September 14, 2014). Labeling by 13 C of the tree branch (June 2013, for 3 branch replicates in 3 different trees) and the whole tree was conducted at early (June 2014), middle (July 2014), and late (August 2013) phase of growing season (for different trees in 3 replicates each time) by three pulses [(CO 2 )max = 3000-4000 ppmv, 13 CO 2 (30 % v/v)]. We found at least two different patterns of carbon translocation associated with larch CO 2 assimilation depending on needle phenology. In early period of growing season (June), 13 C appearing in newly developed needles is a result of remobilized storage material use for growth purposes. Then approximately at the end of June, growth processes is switching to storage processes lasting to the end of growing season.

Constructing an optimal decision tree for FAST corner point detection

KAUST Repository

Alkhalid, Abdulaziz; Chikalov, Igor; Moshkov, Mikhail

2011-01-01

In this paper, we consider a problem that is originated in computer vision: determining an optimal testing strategy for the corner point detection problem that is a part of FAST algorithm [11,12]. The problem can be formulated as building a decision tree with the minimum average depth for a decision table with all discrete attributes. We experimentally compare performance of an exact algorithm based on dynamic programming and several greedy algorithms that differ in the attribute selection criterion. © 2011 Springer-Verlag.

Early and late seasonal carbon sequestration and allocation in larch trees growing on permafrost in Central Siberia

Science.gov (United States)

Masyagina, Oxana; Prokushkin, Anatoly; Kirdyanov, Alexander; Artyukhov, Aleksey; Udalova, Tatiana; Senchenkov, Sergey; Rublev, Aleksey

2014-05-01

Despite large geographic extent of deciduous conifer species Larix gmelinii, its seasonal photosynthetic activity and translocation of photoassimilated carbon within a tree remain poorly studied. To get better insight into productivity of larch trees growing on permafrost soils in Siberian larch biome we aimed to analyze dynamics of foliage parameters (i.e. leaf area, biomass, %N, %P etc.), seasonal dynamics of photosynthetic activity and apply whole tree labeling by 13CO2, which is powerful and effective tool for tracing newly developed assimilates translocation to tissues and organs of a tree (Kagawa et al., 2006; Keel et al., 2012). Experimental plot has been established in mature 105 year-old larch stand located within the continuous permafrost area near Tura settlement (Central Siberia, 64o17'13" N, 100o11'55" E, 148 m a.s.l.). Trees selected for experiments represented mean tree of the stand. Measurements of seasonal photosynthetic activity and foliar biomass sampling were arranged from early growing season (June 8, 2013) until yellowing and senescence of needles on September 17, 2013. Labeling by 13C in whole tree chamber was conducted by three pulses ([CO2]max ≤ 2,500 ppmv, 13CO2 (30% v/v)) at the early (June) and late (August) phase of growing season for different trees in 3 replicates each time. Both early season and late season labeling experiments demonstrated high rate of 13CO2 assimilation and respective enrichment of needle tissues by 13C: δ13C increased from -28.7 up to +670‰ just after labeling. However, there was distinct post-labeling dynamics of needle δ13C among two seasonal experiments. At the early season 13C depletion in labeled needles was slower, and δ13C approached after 40 days ca. +110 ‰ and remained constant till senescence. In the late season (August) needles were losing labeled C with much faster rate and approached only +1.5 ‰ upon senescence (28 days exposition). These findings suggest that in early season ca. 20% of

CO2 enrichment alters diurnal stem radius fluctuations of 36-yr-old Larix decidua growing at the alpine tree line.

Science.gov (United States)

Dawes, Melissa A; Zweifel, Roman; Dawes, Nicholas; Rixen, Christian; Hagedorn, Frank

2014-06-01

To understand how trees at high elevations might use water differently in the future, we investigated the effects of CO2 enrichment and soil warming (separately and combined) on the water relations of Larix decidua growing at the tree line in the Swiss Alps. We assessed diurnal stem radius fluctuations using point dendrometers and applied a hydraulic plant model using microclimate and soil water potential data as inputs. Trees exposed to CO2 enrichment for 9 yr showed smaller diurnal stem radius contractions (by 46 ± 16%) and expansions (42 ± 16%) compared with trees exposed to ambient CO2 . Additionally, there was a delay in the timing of daily maximum (40 ± 12 min) and minimum (63 ± 14 min) radius values for trees growing under elevated CO2 . Parameters optimized with the hydraulic model suggested that CO2 -enriched trees had an increased flow resistance between the xylem and bark, representing a more buffered water supply system. Soil warming did not alter diurnal fluctuation dynamics or the CO2 response. Elevated CO2 altered the hydraulic water flow and storage system within L. decidua trees, which might have contributed to enhanced growth during 9 yr of CO2 enrichment and could ultimately influence the future competitive ability of this key tree-line species. © 2014 WSL Institute for Snow and Avalanche Research - SLF. New Phytologist © 2014 New Phytologist Trust.

Tree compression with top trees

DEFF Research Database (Denmark)

Bille, Philip; Gørtz, Inge Li; Landau, Gad M.

2013-01-01

We introduce a new compression scheme for labeled trees based on top trees [3]. Our compression scheme is the first to simultaneously take advantage of internal repeats in the tree (as opposed to the classical DAG compression that only exploits rooted subtree repeats) while also supporting fast...

Tree compression with top trees

DEFF Research Database (Denmark)

Bille, Philip; Gørtz, Inge Li; Landau, Gad M.

2015-01-01

We introduce a new compression scheme for labeled trees based on top trees. Our compression scheme is the first to simultaneously take advantage of internal repeats in the tree (as opposed to the classical DAG compression that only exploits rooted subtree repeats) while also supporting fast...

The invasive alien tree Falcataria moluccana: its impacts and management

Science.gov (United States)

Flint Hughes; Tracy Johnson; Amanda Uowolo

2013-01-01

Falcataria moluccana (Miq.) Barneby and Grimes is a large tree that has become invasive in forests and developed landscapes across many Pacific islands. A fast-growing nitrogenfixing species, it transforms invaded ecosystems by dramatically increasing nutrient inputs, suppressing native species and facilitating invasion by other weeds. Individuals rapidly reach heights...

Growth and elemental content of two tree species growing on abandoned coal fly ash basins

International Nuclear Information System (INIS)

Carlson, C.L.; Adriano, D.C.

1991-01-01

Differences in aboveground tissue concentrations of trace elements were assessed for sweetgum (Liquidambar styraciflua L.) and sycamore (Plantanus occidentalis L.) growing on two abandoned coal fly ash basins and a control soil. The wet basin (pH = 5.58) had originally received precipitator ash in an ash-water slurry, while the dry basin (pH = 8.26) had received both precipitator and bottom ash in dry form. In general, trees from the wet basin exhibited elevated trace element concentrations in comparison to the controls, while the dry basin trees exhibited reduced concentrations. On eof the most striking differenced in elemental concentrations among the ash basin and control trees was observed for Mn, with the control trees exhibiting concentrations orders of magnitude greater than the ash basin trees. Differences in foliar trace element concentrations among the sites can generally be explained by differences in substrate trace element concentrations and/or substrate pH. While trees from the wet ash basin generally had the highest trace element concentrations, these trees also attained the greatest height and diameter growth, suggesting that the elevated trace element concentrations in the wet basin substrate are not limiting the establishment of these two species. The greater height and diameter growth of the wet basin trees is presumably a result of the greater water-holding capacity of the substrate on this site. Differences in growth and tissue concentrations between sweetgum and sycamore highlight the importance of using more than one species when assessing metal toxicity or deficiency on a given substrate

Video Segmentation Using Fast Marching and Region Growing Algorithms

Directory of Open Access Journals (Sweden)

Eftychis Sifakis

2002-04-01

Full Text Available The algorithm presented in this paper is comprised of three main stages: (1 classification of the image sequence and, in the case of a moving camera, parametric motion estimation, (2 change detection having as reference a fixed frame, an appropriately selected frame or a displaced frame, and (3 object localization using local colour features. The image sequence classification is based on statistical tests on the frame difference. The change detection module uses a two-label fast marching algorithm. Finally, the object localization uses a region growing algorithm based on the colour similarity. Video object segmentation results are shown using the COST 211 data set.

Unusual fast-growing ovarian cystic teratoma during pregnancy presenting with intracystic fat "floating balls" appearance.

Science.gov (United States)

Donnadieu, Anne Claire; Deffieux, Xavier; Le Ray, Camille; Mordefroid, Marie; Frydman, René; Fernandez, Hervé

2006-12-01

A large ovarian cyst was diagnosed at 22 weeks' of gestation in a 32-year-old woman. The ultrasonographic appearance of the ovarian cyst was unusual with multiple mobile, spherical echogenic structures floating in the cystic mass, called intracystic "fat balls." Right adnexectomy was performed by laparotomy at 28 weeks' of gestation, because of rapid growth and overall size exceeding 20 cm. Pathological examination confirmed ovarian cystic teratoma. Usually, dermoid cysts are slow-growing, even in premenopausal women. The exact mechanism related to the fast growth during pregnancy is unknown. It could be related to an unusual pattern of estrogen (E)/P receptors expression in the cystic teratoma. This case shows that a fast-growing, mature ovarian cystic teratoma may occur during pregnancy.

Growth rates of important East African montane forest trees, with ...

African Journals Online (AJOL)

These trees showed growth rates at least twice as high as those of the primary species. Juniperus procera was found to be the fastest growing species in the cedar forest, underlining its success in forming dense stands after a fire. Only young Podocarpus latifolius showed a similar fast growth. Olea europaea ssp. cuspidata, ...

Carbonization of some fast-growing species in Sudan

Energy Technology Data Exchange (ETDEWEB)

Khristova, P.; Khalifa, A.W. (Khartoum Univ. (Sudan). Forestry Dept.)

1993-01-01

Four wood species, indigenous Acacia seyal (talh) and exotic fast-growing Conocarpus lancifolius (damas), Eucalyptus microtheca (kafur) and Prosopis chilensis (mesquite) grown in Sudan, were assessed and compared as raw materials for charcoal making. The effects of production method (traditional earth mound and improved metal kiln) and the physical and chemical properties of the wood and bark on the yield and quality of charcoal produced were assessed. Regression analyses of wood properties and heat value data indicated high negative correlations of the wood heat value with halocellulose and ash, and high positive correlations with wood density, lignin, and alcohol-benzene and hot-water solubles. Carbonization with the Tropical Products Institute metal kiln produced higher yields (33%) than the traditional earth mound (27%), although the difference in energy transformation yields was found to be insignificant both between appliances and species. (author)

Nitrogen fixation in four dryland tree species in central Chile

International Nuclear Information System (INIS)

Ovalle, C.; Arredondo, S.; Aronson, J.; Longeri, L.; Avendano, J.

1998-01-01

Results are presented from a 5-year experiment using 15 N-enriched fertilizer to determine N 2 fixation in four tree species on degraded soils in a Mediterranean-climate region of central Chile in which there are 5 months of drought. Species tested included three slow-growing but long-lived savannah trees native to southers South America, (acacia caven, Prosopic alba and P. chilensis; Mimosoideae), and Tagasaste (Chamaecytisus proliferus ssp. palmensis; Papilonoideae), a fast-growing but medium-lived tree from the Canary Islands. Tagasaste produced four- to twenty-fold more biomass than the other species, but showed declining N 2 fixation and biomass accumulation during the 5th year, corresponding to the juvenile-to-adult developmental transition. Nitrogen content was significantly higher in Tagasaste and Acacia caven than in the other species. The data revealed inter-specific differences in resource allocation and phenology of N 2 fixation rarely detailed for woody plants in dryland regions. (author)

Ecological Impact on Nitrogen and Phosphorus Cycling of a Widespread Fast-growing Leguminous Tropical Forest Plantation Tree Species, Acacia mangium

Directory of Open Access Journals (Sweden)

Shigehiro Ishizuka

2011-11-01

Full Text Available Symbiotic nitrogen fixation is one of the major pathways of N input to forest ecosystems, enriching N availability, particularly in lowland tropics. Recently there is growing concern regarding the wide areas of fast-growing leguminous plantations that could alter global N2O emissions. Here, we highlight substantially different N and phosphorus utilization and cycling at a plantation of Acacia mangium, which is N2-fixing and one of the major plantation species in tropical/subtropical Asia. The litterfall, fresh leaf quality and fine-root ingrowth of A. mangium were compared to those of non-N2-fixing Swietenia macrophylla and coniferous Araucaria cunninghamii in wet tropical climates in Borneo, Malaysia. The N and P concentrations of the A. mangium fresh leaves were higher than those of the other two species, whereas the P concentration in the leaf-litterfall of A. mangium was less than half that of the others; in contrast the N concentration was higher. The N:P ratio in the A. mangium leaf was markedly increased from fresh-leaf (29 to leaf-litterfall (81. Although the N flux in the total litterfall at the A. mangium plantation was large, the fine-root ingrowth of A. mangium significantly increased by applying both N and P. In conclusion, large quantities of N were accumulated and returned to the forest floor in A. mangium plantation, while its P resorption capacity was efficient. Such large N cycling and restricted P cycling in wide areas of monoculture A. mangium plantations may alter N and P cycling and their balance in the organic layer and soil on a stand level.

Fast growing plantations for wood production – integration of ecological effects and economic perspectives

Directory of Open Access Journals (Sweden)

Michael eBredemeier

2015-06-01

Full Text Available Biomass crops are perceived as a feasible means to substitute sizeable amounts of fossil fuel in the future. A prospect of CO2 reduction (resp. CO2 neutrality is credited to biomass fuels, and thus a potential contribution to mitigate climate change. Short rotation coppices (SRC with fast growing poplar and willow trees are an option for producing high yields of woody biomass, which is suitable for both energetic and material use. One negative effect that comes along with the establishment of SRC may be a decrease in groundwater recharge, because high rates of transpiration and interception are anticipated. Therefore, it is important to measure, analyse, and model the effects of SRC-planting on landscape water budgets. To analyse the effects on the water budget a poplar SRC plot was studied by measuring hydrological parameters to be used in the hydrological model WaSim. Results reveal very low or even missing ground water recharge for SRC compared to agricultural land use or grassland, especially succeeding dry years. However, this strong effect on plot level is moderated on the larger spatial scale of catchment level, for which the modelling was also performed. In addition to water, nutrient fluxes and budgets were studied. Nitrogen is still a crucial issue in today's agriculture. Intensive fertilization or increased applications of manure from concentrated livestock breeding are often leading to high loads of nitrate leaching, or enhanced N2O emissions to the atmosphere on arable crop fields. SRC or agroforestry systems (AF on former crop land may offer an option to decrease such N losses, while simultaneously producing woody biomass. This is mainly due to the generally smaller N requirements of woody vegetation, which usually entail no need for any fertilization. The trees supply deep and permanent rooting systems, which can be regarded as a safety net to prevent nutrient leaching. Thus, SRC altogether can help to diminish N eutrophication.

Effect of Tree-Fall Gaps on Fruit-Feeding Nymphalidae Assemblages in a Peruvian Rainforest

OpenAIRE

Pardonnet, Sylvia

2010-01-01

Tropical rainforests are among the most complex and diverse ecosystems, composed of a mosaic of shady understory under the closed canopy and tree-fall gaps of varying sizes and age. The light reaching the forest floor favors the recruitment of fast growing plant species and provide food resources for other animal species including butterflies. The Nymphalidae are the most species rich butterfly family in the tropics, and are ideal bioindicators. We investigated the effect of the tree-fall gap...

Gas exchange, heat production and oxidation of fat in chicken embryos from a fast or slow growing line

DEFF Research Database (Denmark)

Chwalibog, André; Tauson, Anne-Helene; Ali, Abdalla

2007-01-01

The experiment comprised 48 chicken (Gallus gallus) embryos from a modern, fast growing line, Ross 308 (RO) and 48 from a slow growing line, Labresse (LA). The O(2) consumption and CO(2) production were measured in an open-air-circuit respiration unit, and heat production (HE) from embryos was ca...

Quantitative and qualitative characteristics of cell wall components and prenyl lipids in the leaves of Tilia x euchlora trees growing under salt stress.

Science.gov (United States)

Milewska-Hendel, Anna; Baczewska, Aneta H; Sala, Katarzyna; Dmuchowski, Wojciech; Brągoszewska, Paulina; Gozdowski, Dariusz; Jozwiak, Adam; Chojnacki, Tadeusz; Swiezewska, Ewa; Kurczynska, Ewa

2017-01-01

The study was focused on assessing the presence of arabinogalactan proteins (AGPs) and pectins within the cell walls as well as prenyl lipids, sodium and chlorine content in leaves of Tilia x euchlora trees. The leaves that were analyzed were collected from trees with and without signs of damage that were all growing in the same salt stress conditions. The reason for undertaking these investigations was the observations over many years that indicated that there are trees that present a healthy appearance and trees that have visible symptoms of decay in the same habitat. Leaf samples were collected from trees growing in the median strip between roadways that have been intensively salted during the winter season for many years. The sodium content was determined using atomic spectrophotometry, chloride using potentiometric titration and poly-isoprenoids using HPLC/UV. AGPs and pectins were determined using immunohistochemistry methods. The immunohistochemical analysis showed that rhamnogalacturonans I (RG-I) and homogalacturonans were differentially distributed in leaves from healthy trees in contrast to leaves from injured trees. In the case of AGPs, the most visible difference was the presence of the JIM16 epitope. Chemical analyses of sodium and chloride showed that in the leaves from injured trees, the level of these ions was higher than in the leaves from healthy trees. Based on chromatographic analysis, four poly-isoprenoid alcohols were identified in the leaves of T. x euchlora. The levels of these lipids were higher in the leaves from healthy trees. The results suggest that the differences that were detected in the apoplast and symplasm may be part of the defensive strategy of T. x euchlora trees to salt stress, which rely on changes in the chemical composition of the cell wall with respect to the pectic and AGP epitopes and an increased synthesis of prenyl lipids.

Video data of flowers, fruitlets, and fruit in apple trees during the 2017 growing season at USDA-ARS-AFRS

Science.gov (United States)

This record contains videos of apple trees acquired from a ground vehicle throughout the growing season at the USDA-ARS, Appalachian Fruit Research Station. Research in precision management methods in orchard crops revolve around locating objects of interest, namely flowers, fruitlets, and fruit, a...

Reduced trace element concentrations in fast-growing juvenile Atlantic salmon in natural streams.

Science.gov (United States)

Ward, Darren M; Nislow, Keith H; Chen, Celia Y; Folt, Carol L

2010-05-01

To assess the effect of rapid individual growth on trace element concentrations in fish, we measured concentrations of seven trace elements (As, Cd, Cs, Hg, Pb, Se, Zn) in stream-dwelling Atlantic salmon (Salmo salar) from 15 sites encompassing a 10-fold range in salmon growth. All salmon were hatched under uniform conditions, released into streams, and sampled approximately 120 days later for trace element analysis. For most elements, element concentrations in salmon tracked those in their prey. Fast-growing salmon had lower concentrations of all elements than slow growers, after accounting for prey concentrations. This pattern held for essential and nonessential elements, as well as elements that accumulate from food and those that can accumulate from water. At the sites with the fastest salmon growth, trace element concentrations in salmon were 37% (Cs) to 86% (Pb) lower than at sites where growth was suppressed. Given that concentrations were generally below levels harmful to salmon and that the pattern was consistent across all elements, we suggest that dilution of elements in larger biomass led to lower concentrations in fast-growing fish. Streams that foster rapid, efficient fish growth may produce fish with lower concentrations of elements potentially toxic for human and wildlife consumers.

Efficient, reliable and fast high-level triggering using a bonsai boosted decision tree

International Nuclear Information System (INIS)

Gligorov, V V; Williams, M

2013-01-01

High-level triggering is a vital component of many modern particle physics experiments. This paper describes a modification to the standard boosted decision tree (BDT) classifier, the so-called bonsai BDT, that has the following important properties: it is more efficient than traditional cut-based approaches; it is robust against detector instabilities, and it is very fast. Thus, it is fit-for-purpose for the online running conditions faced by any large-scale data acquisition system.

Fast Growing Plantations for Wood Production - Integration of Ecological Effects and Economic Perspectives.

Science.gov (United States)

Bredemeier, Michael; Busch, Gerald; Hartmann, Linda; Jansen, Martin; Richter, Falk; Lamersdorf, Norbert P

2015-01-01

Biomass crops are perceived as a feasible means to substitute sizeable amounts of fossil fuel in the future. A prospect of CO2 reduction (resp. CO2 neutrality) is credited to biomass fuels, and thus a potential contribution to mitigate climate change. Short rotation coppices (SRCs) with fast growing poplar and willow trees are an option for producing high yields of woody biomass, which is suitable for both energetic and material use. One negative effect that comes along with the establishment of SRC may be a decrease in groundwater recharge, because high rates of transpiration and interception are anticipated. Therefore, it is important to measure, analyze, and model the effects of SRC-planting on landscape water budgets. To analyze the effects on the water budget, a poplar SRC plot was studied by measuring hydrological parameters to be used in the hydrological model WaSim. Results reveal very low or even missing ground water recharge for SRC compared to agricultural land use or grassland, especially succeeding dry years. However, this strong effect on plot level is moderated on the larger spatial scale of catchment level, for which the modeling was also performed. In addition to water, nutrient fluxes and budgets were studied. Nitrogen is still a crucial issue in today's agriculture. Intensive fertilization or increased applications of manure from concentrated livestock breeding are often leading to high loads of nitrate leaching, or enhanced N2O emissions to the atmosphere on arable crop fields. SRC or agroforestry systems on former crop land may offer an option to decrease such N losses, while simultaneously producing woody biomass. This is mainly due to the generally smaller N requirements of woody vegetation, which usually entail no need for any fertilization. The trees supply deep and permanent rooting systems, which can be regarded as a "safety net" to prevent nutrient leaching. Thus, SRC altogether can help to diminish N eutrophication. It is important to

Tree decomposition based fast search of RNA structures including pseudoknots in genomes.

Science.gov (United States)

Song, Yinglei; Liu, Chunmei; Malmberg, Russell; Pan, Fangfang; Cai, Liming

2005-01-01

Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of efficient algorithms for accurate RNA structure-sequence alignment, computer programs capable of fast and effectively searching genomes for RNA secondary structures have not been available. In this paper, a novel RNA structure profiling model is introduced based on the notion of a conformational graph to specify the consensus structure of an RNA family. Tree decomposition yields a small tree width t for such conformation graphs (e.g., t = 2 for stem loops and only a slight increase for pseudo-knots). Within this modelling framework, the optimal alignment of a sequence to the structure model corresponds to finding a maximum valued isomorphic subgraph and consequently can be accomplished through dynamic programming on the tree decomposition of the conformational graph in time O(k(t)N(2)), where k is a small parameter; and N is the size of the projiled RNA structure. Experiments show that the application of the alignment algorithm to search in genomes yields the same search accuracy as methods based on a Covariance model with a significant reduction in computation time. In particular; very accurate searches of tmRNAs in bacteria genomes and of telomerase RNAs in yeast genomes can be accomplished in days, as opposed to months required by other methods. The tree decomposition based searching tool is free upon request and can be downloaded at our site h t t p ://w.uga.edu/RNA-informatics/software/index.php.

FEATURE RECOGNITION BERBASIS CORNER DETECTION DENGAN METODE FAST, SURF DAN FLANN TREE UNTUK IDENTIFIKASI LOGO PADA AUGMENTED REALITY MOBILE SYSTEM

Directory of Open Access Journals (Sweden)

Rastri Prathivi

2014-01-01

Full Text Available Logo is a graphical symbol that is the identity of an organization, institution, or company. Logo is generally used to introduce to the public the existence of an organization, institution, or company. Through the existence of an agency logo can be seen by the public. Feature recognition is one of the processes that exist within an augmented reality system. One of uses augmented reality is able to recognize the identity of the logo through a camera.The first step to make a process of feature recognition is through the corner detection. Incorporation of several method such as FAST, SURF, and FLANN TREE for the feature detection process based corner detection feature matching up process, will have the better ability to detect the presence of a logo. Additionally when running the feature extraction process there are several issues that arise as scale invariant feature and rotation invariant feature. In this study the research object in the form of logo to the priority to make the process of feature recognition. FAST, SURF, and FLANN TREE method will detection logo with scale invariant feature and rotation invariant feature conditions. Obtained from this study will demonstration the accuracy from FAST, SURF, and FLANN TREE methods to solve the scale invariant and rotation invariant feature problems.

Differences in xylogenesis between dominant and suppressed trees.

Science.gov (United States)

Liu, Shushan; Li, Xiaoxia; Rossi, Sergio; Wang, Lily; Li, Wei; Liang, Eryuan; Leavitt, Steven W

2018-05-01

Most dendroecological studies focus on dominant trees, but little is known about the growing season of trees belonging to different size classes and their sensitivity to biotic factors. The objective of this study was to compare the dynamics of xylem formation between dominant and suppressed trees of Abies fabri of similar age growing in the Gongga Mountains, southeastern Tibetan Plateau, and to identify the association between xylem growth and climate. The timing and duration of xylogenesis in histological sections were investigated weekly during the 2013-2015 growing seasons. Our investigation found that timing and duration of xylogenesis varied with canopy position and its associated tree size. Xylogenesis started 6-14 days earlier, and ended 5-11 days later in dominant trees than in suppressed trees, resulting in a significantly longer growing season. Dominant trees also exhibited higher temperature sensitivity of tracheid production rate than suppressed trees. The observed differences in xylogenesis among trees suggested that competition affects tree growth by reducing the growing period in suppressed trees. Representative climate-growth relationships should involve trees of all size classes when evaluating the effects of the environment on forest dynamics. © 2018 Botanical Society of America.

Flowering Trees

Indian Academy of Sciences (India)

Flowering Trees. Gyrocarpus americanus Jacq. (Helicopter Tree) of Hernandiaceae is a moderate size deciduous tree that grows to about 12 m in height with a smooth, shining, greenish-white bark. The leaves are ovate, rarely irregularly ... flowers which are unpleasant smelling. Fruit is a woody nut with two long thin wings.

Environmental tritium in trees

International Nuclear Information System (INIS)

Brown, R.M.

1979-01-01

The distribution of environmental tritium in the free water and organically bound hydrogen of trees growing in the vicinity of the Chalk River Nuclear Laboratories (CRNL) has been studied. The regional dispersal of HTO in the atmosphere has been observed by surveying the tritium content of leaf moisture. Measurement of the distribution of organically bound tritium in the wood of tree ring sequences has given information on past concentrations of HTO taken up by trees growing in the CRNL Liquid Waste Disposal Area. For samples at background environmental levels, cellulose separation and analysis was done. The pattern of bomb tritium in precipitation of 1955-68 was observed to be preserved in the organically bound tritium of a tree ring sequence. Reactor tritium was discernible in a tree growing at a distance of 10 km from CRNL. These techniques provide convenient means of monitoring dispersal of HTO from nuclear facilities. (author)

Biotechnology and genetic optimization of fast-growing hardwoods

Energy Technology Data Exchange (ETDEWEB)

Garton, S.; Syrkin-Wurtele, E.; Griffiths, H.; Schell, J.; Van Camp, L.; Bulka, K. (NPI, Salt Lake City, UT (United States))

1991-02-01

A biotechnology research program was initiated to develop new clones of fast-growing Populus clones resistant to the herbicide glyphosate and resistant to the leaf-spot and canker disease caused by the fungus Septoria musiva. Glyphosate-resistant callus was selected from stem segments cultured in vitro on media supplemented with the herbicide. Plants were regenerated from the glyphosate-resistant callus tissue. A portion of plants reverted to a glyphosate susceptible phenotype during organogenesis. A biologically active filtrate was prepared from S. musiva and influenced fresh weight of Populus callus tissue. Disease-resistant plants were produced through somaclonal variation when shoots developed on stem internodes cultured in vitro. Plantlets were screened for disease symptoms after spraying with a suspension of fungal spores. A frequency of 0.83 percent variant production was observed. Genetically engineered plants were produced after treatment of plant tissue with Agrobacterium tumefasciens strains carrying plasmid genes for antibiotic resistance. Transformers were selected on media enriched with the antibiotic, kanamycin. Presence of foreign DNA was confirmed by Southern blot analysis. Protoplasts of popular were produced but did not regenerate into plant organs. 145 refs., 12 figs., 36 tabs.

Growing quality of life: urban trees, birth weight, and crime

Science.gov (United States)

John Kirkland; Geoffrey Donovan

2011-01-01

City dwellers can find many reasons to value neighborhood trees. The urban greenery provides relief from the built environment that many find appealing. In fact, a previous study found that a tree in front of a home increased that home's sales price by more than $7,000. Two new studies explore the measurable effects that urban trees and green spaces have a human...

Shedding light on tree growth : ring analysis of juvenile tropical trees

NARCIS (Netherlands)

Soliz Gamboa, C.C.

2010-01-01

In the understory of tropical forests light is believed to be the main limiting growth factor for the newly established trees. Trees growing in shade of the understory may experience periods of slow radial growth. It is expected that gaps created by tree or branch fall will provoke tree growth

Gut Microbiota Contributes to the Growth of Fast-Growing Transgenic Common Carp (Cyprinus carpio L.)

Science.gov (United States)

Xie, Shouqi; Hu, Wei; Yu, Yuhe; Hu, Zihua

2013-01-01

Gut microbiota has shown tight and coordinated connection with various functions of its host such as metabolism, immunity, energy utilization, and health maintenance. To gain insight into whether gut microbes affect the metabolism of fish, we employed fast-growing transgenic common carp (Cyprinus carpio L.) to study the connections between its large body feature and gut microbes. Metagenome-based fingerprinting and high-throughput sequencing on bacterial 16S rRNA genes indicated that fish gut was dominated by Proteobacteria, Fusobacteria, Bacteroidetes and Firmicutes, which displayed significant differences between transgenic fish and wild-type controls. Analyses to study the association of gut microbes with the fish metabolism discovered three major phyla having significant relationships with the host metabolic factors. Biochemical and histological analyses indicated transgenic fish had increased carbohydrate but decreased lipid metabolisms. Additionally, transgenic fish has a significantly lower Bacteroidetes:Firmicutes ratio than that of wild-type controls, which is similar to mammals between obese and lean individuals. These findings suggest that gut microbiotas are associated with the growth of fast growing transgenic fish, and the relative abundance of Firmicutes over Bacteroidetes could be one of the factors contributing to its fast growth. Since the large body size of transgenic fish displays a proportional body growth, which is unlike obesity in human, the results together with the findings from others also suggest that the link between obesity and gut microbiota is likely more complex than a simple Bacteroidetes:Firmicutes ratio change. PMID:23741344

Gut microbiota contributes to the growth of fast-growing transgenic common carp (Cyprinus carpio L..

Directory of Open Access Journals (Sweden)

Xuemei Li

Full Text Available Gut microbiota has shown tight and coordinated connection with various functions of its host such as metabolism, immunity, energy utilization, and health maintenance. To gain insight into whether gut microbes affect the metabolism of fish, we employed fast-growing transgenic common carp (Cyprinus carpio L. to study the connections between its large body feature and gut microbes. Metagenome-based fingerprinting and high-throughput sequencing on bacterial 16S rRNA genes indicated that fish gut was dominated by Proteobacteria, Fusobacteria, Bacteroidetes and Firmicutes, which displayed significant differences between transgenic fish and wild-type controls. Analyses to study the association of gut microbes with the fish metabolism discovered three major phyla having significant relationships with the host metabolic factors. Biochemical and histological analyses indicated transgenic fish had increased carbohydrate but decreased lipid metabolisms. Additionally, transgenic fish has a significantly lower Bacteroidetes:Firmicutes ratio than that of wild-type controls, which is similar to mammals between obese and lean individuals. These findings suggest that gut microbiotas are associated with the growth of fast growing transgenic fish, and the relative abundance of Firmicutes over Bacteroidetes could be one of the factors contributing to its fast growth. Since the large body size of transgenic fish displays a proportional body growth, which is unlike obesity in human, the results together with the findings from others also suggest that the link between obesity and gut microbiota is likely more complex than a simple Bacteroidetes:Firmicutes ratio change.

Insight into the Genetic Components of Community Genetics: QTL Mapping of Insect Association in a Fast-Growing Forest Tree

NARCIS (Netherlands)

DeWoody, J.; Viger, M.; Lakatos, F.; Tuba, K.; Taylor, G.; Smulders, M.J.M.

2013-01-01

Identifying genetic sequences underlying insect associations on forest trees will improve the understanding of community genetics on a broad scale. We tested for genomic regions associated with insects in hybrid poplar using quantitative trait loci (QTL) analyses conducted on data from a common

Single-tree water use and water-use efficiencies of selected indigenous and introduced species in the Southern Cape region of South Africa

CSIR Research Space (South Africa)

Mapeto, P

2017-03-01

Full Text Available In South Africa, the development of a plantation tree industry using fast-growing introduced species was accelerated by the limited extent of indigenous forests. However, concerns about the impacts of plantations on the country’s limited water...

StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees.

Science.gov (United States)

Roosaare, Märt; Vaher, Mihkel; Kaplinski, Lauris; Möls, Märt; Andreson, Reidar; Lepamets, Maarja; Kõressaar, Triinu; Naaber, Paul; Kõljalg, Siiri; Remm, Maido

2017-01-01

Fast, accurate and high-throughput identification of bacterial isolates is in great demand. The present work was conducted to investigate the possibility of identifying isolates from unassembled next-generation sequencing reads using custom-made guide trees. A tool named StrainSeeker was developed that constructs a list of specific k -mers for each node of any given Newick-format tree and enables the identification of bacterial isolates in 1-2 min. It uses a novel algorithm, which analyses the observed and expected fractions of node-specific k -mers to test the presence of each node in the sample. This allows StrainSeeker to determine where the isolate branches off the guide tree and assign it to a clade whereas other tools assign each read to a reference genome. Using a dataset of 100 Escherichia coli isolates, we demonstrate that StrainSeeker can predict the clades of E. coli with 92% accuracy and correct tree branch assignment with 98% accuracy. Twenty-five thousand Illumina HiSeq reads are sufficient for identification of the strain. StrainSeeker is a software program that identifies bacterial isolates by assigning them to nodes or leaves of a custom-made guide tree. StrainSeeker's web interface and pre-computed guide trees are available at http://bioinfo.ut.ee/strainseeker. Source code is stored at GitHub: https://github.com/bioinfo-ut/StrainSeeker.

Relationships among foliar chemistry, foliar polyamines, and soil chemistry in red spruce trees growing across the northeastern United States

Science.gov (United States)

Minocha, R.; Shortle, W.C.; Lawrence, G.B.; David, M.B.; Minocha, S.C.

1997-01-01

Forest trees are constantly exposed to various types of natural and anthropogenic stressors. A major long-term goal of our research is to develop a set of early physiological and biochemical markers of stress in trees before the appearance of visual symptoms. Six red spruce (Picea rubens Sarg.) stands from the northeastern United States were selected for collection of soil and foliage samples. All of the chosen sites had soil solution pH values below 4.0 in the Oa horizon but varied in their geochemistry. Some of these sites were apparently under some form of environmental stress as indicated by a large number of dead and dying red spruce trees. Samples of soil and needles (from apparently healthy red spruce trees) were collected from these sites four times during a two-year period. The needles were analyzed for perchloric acid-soluble polyamines and exchangeable inorganic ions. Soil and soil solution samples from the Oa and B horizons were analyzed for their exchange chemistry. The data showed a strong positive correlation between Ca and Mg concentrations in the needles and in the Oa horizon of the soil. However, needles from trees growing on relatively Ca-rich soils with a low exchangeable Al concentration and a low Al:Ca soil solution ratio had significantly lower concentrations of putrescine and spermidine than those growing on Ca-poor soils with a high exchangeable Al concentration and a high Al:Ca soil solution in the Oa horizon. The magnitude of this change was several fold higher for putrescine concentrations than for spermidine concentrations. Neither putrescine nor spermidine were correlated with soil solution Ca, Mg, and Al concentrations in the B horizon. The putrescine concentrations of the needles always correlated significantly with exchangeable Al (r2=0.73, p???0.05) and still solution Al:Ca ratios (r2=0.91, p???0.01) of the Oa horizon. This suggests that in conjunction with soil chemistry, putrescine and/or spermidine may be used as a potential

Flavonoid supplementation affects the expression of genes involved in cell wall formation and lignification metabolism and increases sugar content and saccharification in the fast-growing eucalyptus hybrid E. urophylla x E. grandis.

Science.gov (United States)

Lepikson-Neto, Jorge; Nascimento, Leandro C; Salazar, Marcela M; Camargo, Eduardo L O; Cairo, João P F; Teixeira, Paulo J; Marques, Wesley L; Squina, Fabio M; Mieczkowski, Piotr; Deckmann, Ana C; Pereira, Gonçalo A G

2014-11-19

Eucalyptus species are the most widely planted hardwood species in the world and are renowned for their rapid growth and adaptability. In Brazil, one of the most widely grown Eucalyptus cultivars is the fast-growing Eucalyptus urophylla x Eucalyptus grandis hybrid. In a previous study, we described a chemical characterization of these hybrids when subjected to flavonoid supplementation on 2 distinct timetables, and our results revealed marked differences between the wood composition of the treated and untreated trees. In this work, we report the transcriptional responses occurring in these trees that may be related to the observed chemical differences. Gene expression was analysed through mRNA-sequencing, and notably, compared to control trees, the treated trees display differential down-regulation of cell wall formation pathways such as phenylpropanoid metabolism as well as differential expression of genes involved in sucrose, starch and minor CHO metabolism and genes that play a role in several stress and environmental responses. We also performed enzymatic hydrolysis of wood samples from the different treatments, and the results indicated higher sugar contents and glucose yields in the flavonoid-treated plants. Our results further illustrate the potential use of flavonoids as a nutritional complement for modifying Eucalyptus wood, since, supplementation with flavonoids alters its chemical composition, gene expression and increases saccharification probably as part of a stress response.

Long-term temporal changes in central European tree phenology (1946-2010) confirm the recent extension of growing seasons

Science.gov (United States)

Kolářová, Eva; Nekovář, Jiří; Adamík, Peter

2014-10-01

One of the ways to assess the impacts of climate change on plants is analysing their long-term phenological data. We studied phenological records of 18 common tree species and their 8 phenological phases, spanning 65 years (1946-2010) and covering the area of the Czech Republic. For each species and phenophase, we assessed the changes in its annual means (for detecting shifts in the timing of the event) and standard deviations (for detecting changes in duration of the phenophases). The prevailing pattern across tree species was that since around the year 1976, there has been a consistent advancement of the onset of spring phenophases (leaf unfolding and flowering) and subsequent acceleration of fruit ripening, and a delay of autumn phenophases (leaf colouring and leaf falling). The most considerable shifts in the timing of spring phenophases were displayed by early-successional short-lived tree species. The most pronounced temporal shifts were found for the beginning of seed ripening in conifers with an advancement in this phenophase of up to 2.2 days year-1 in Scots Pine ( Pinus sylvestris). With regards to the change in duration of the phenophases, no consistent patterns were revealed. The growing season has extended on average by 23.8 days during the last 35 years. The most considerable prolongation was found in Pedunculate Oak ( Quercus robur): 31.6 days (1976-2010). Extended growing season lengths do have the potential to increase growth and seed productivity, but unequal shifts among species might alter competitive relationships within ecosystems.

The rise of the mediocre forest: why chronically stressed trees may better survive extreme episodic climate variability

Science.gov (United States)

Steven G. McNulty; Johnny L. Boggs; Ge Sun

2014-01-01

Anthropogenic climate change is a relatively new phenomenon, largely occurring over the past 150 years, and much of the discussion on climate change impacts to forests has focused on long-term shifts in temperature and precipitation. However, individual trees respond to the much shorter impacts of climate variability. Historically, fast growing, fully canopied, non-...

Timber tree-based contour hedgerow system on sloping acid upland soils: the use of 15N in quantifying tree-crop interaction in agroforestry system

International Nuclear Information System (INIS)

Rosales, Crispina M.; Pailagao, Charmaine; Grafia, Alfonso O.; Rivera, Faye G.; Mercado, Agustin R. Jr.

2004-01-01

As the population pressures in the upland increase, agroforestry is inevitably the most appropriate technology to enhance the productive and protective functions of farming systems to benefit both the people living inside and outside the watersheds in a suitable manner. Contour hedgerow is one of the agroforestry systems suitable for sloping uplands where farmers grow tree crops as hedgerows and food crops as alleycrops. Smallholder farmers in Southeast Asia have begun farming timber trees in association with food crops on infertile soils as the dominant enterprise using their own capital resources. A collaborative study between the International Centre for Research in Agroforestry (ICRAF) and Philippine Nuclear Research Institute (PNRI) was established to evaluate the performance of fast growing timber trees as hedgerows on subsistence cereal based farming systems, and the role of N-fixing trees as interplant in enhancing the growth of the trees as well as the cereal crops. There were 4 fast growing timber trees being compared: Acacia mangium (N-fixing), Gmelina arborea (non-N-fixing), Euclyptus deglupta (non-N-fixing), and Swietenia macrophylla (non-N-fixing). A mangium was also used as interplant to determine its influence on the growth of the non-N-fixing trees as well as to the cereal crops. Ammonium sulfate enriched with 10.12 15 N atom percent was applied in solution to the upland rice, as alleycrop, at the rate of 69 kgN/ha in the isotope subplot in 2 splits: 30 days after emergence and at panicle initiation stage. This study was conducted in acid upland soil in Claveria, Misamis Oriental. Acacia mangium grew faster compared with G. arborea, E. deglupta, while S. macrophylla grew lower. The growth of E. deglupta and G. arborea was positively affected by N-fixing interplant in low soil fertility environment. G. arborea and A. mangium produced the highest lateral pruning biomass supplying organic nutrients to the associated annual crops. The amount of

Forecasting municipal solid waste generation in a fast-growing urban region with system dynamics modeling

International Nuclear Information System (INIS)

Dyson, Brian; Chang, N.-B.

2005-01-01

Both planning and design of municipal solid waste management systems require accurate prediction of solid waste generation. Yet achieving the anticipated prediction accuracy with regard to the generation trends facing many fast-growing regions is quite challenging. The lack of complete historical records of solid waste quantity and quality due to insufficient budget and unavailable management capacity has resulted in a situation that makes the long-term system planning and/or short-term expansion programs intangible. To effectively handle these problems based on limited data samples, a new analytical approach capable of addressing socioeconomic and environmental situations must be developed and applied for fulfilling the prediction analysis of solid waste generation with reasonable accuracy. This study presents a new approach - system dynamics modeling - for the prediction of solid waste generation in a fast-growing urban area based on a set of limited samples. To address the impact on sustainable development city wide, the practical implementation was assessed by a case study in the city of San Antonio, Texas (USA). This area is becoming one of the fastest-growing regions in North America due to the economic impact of the North American Free Trade Agreement (NAFTA). The analysis presents various trends of solid waste generation associated with five different solid waste generation models using a system dynamics simulation tool - Stella[reg]. Research findings clearly indicate that such a new forecasting approach may cover a variety of possible causative models and track inevitable uncertainties down when traditional statistical least-squares regression methods are unable to handle such issues

Trees grow on money: Urban tree canopy cover and environmental justice

Science.gov (United States)

Kirsten Schwarz; Michail Fragkias; Christopher G. Boone; Weiqi Zhou; Melissa McHale; J. Morgan Grove; Jarlath O' Neil-Dunne; Joseph P. McFadden; Geoffrey L. Buckley; Dan Childers; Laura Ogden; Stephanie Pincetl; Diane Pataki; Ali Whitmer; Mary L. Cadenasso; Steven Arthur. Loiselle

2015-01-01

This study examines the distributional equity of urban tree canopy (UTC) cover for Baltimore, MD, Los Angeles, CA, New York, NY, Philadelphia, PA, Raleigh, NC, Sacramento, CA, and Washington, D.C. using high spatial resolution land cover data and census data. Data are analyzed at the Census Block Group levels using Spearman’s correlation, ordinary least squares...

Effects of nurse trees, spacing, and tree species on biomass production in mixed forest plantations

DEFF Research Database (Denmark)

Nord-Larsen, Thomas; Meilby, Henrik

2016-01-01

Growing concern about increasing concentrations of greenhouse gases in the atmosphere, and resulting global climate change, has spurred a growing demand for renewable energy. In this study, we hypothesized that a nurse tree crop may provide additional early yields of biomass for fuel, while...... was in most cases reduced due to competition. However, provided timely thinning of nurse trees, the qualitative development of the trees will allow for long-term timber production....

Eaton launches EV certification for fast-growing electric vehicle market

Energy Technology Data Exchange (ETDEWEB)

Anon

2011-11-15

This paper presents Electrical Line magazine's industry news, where it covers the launch by Eaton Corporation of electric vehicle (EV) certification for the fast-growing electric vehicle market. The aim of the certification is to help homeowners locate electricians specializing in electric vehicle support. Eaton certified EV contractors will visit the residence of people interested in an EV and determine if it can support a charging station. These contractors are trained, qualified and members of Eaton's certified contractor network. The residential power stations come in a wall-mount or pedestal model that can fully charge an electric car in 6 to 24 hours, depending on the model. The article also covers a new venture by Powercheck, a Vancouver-based company, which ensures that electrical wiring in older homes is safe and complies with their insurance company's safety requirements. Powercheck examines the entire house for electrical fire hazards and produces a detailed report listing the corrective actions needed.

Fast growing aspens in the development of a plant micropropagation system based on plant-produced ethylene action

International Nuclear Information System (INIS)

Žiauka, Jonas; Kuusienė, Sigutė; Šilininkas, Mindaugas

2013-01-01

Representatives of the genus Populus (poplars), such as Populus tremula L. (European aspen) and its fast-growing hybrids, are recognized as being among the most suitable tree species for short rotation coppicing in Northern Europe. Several technologies have been developed for fast propagation of selected aspen genotypes, including laboratory (in vitro) micropropagation, which is usually based on the action of exogenous plant hormones. Seeking to minimize the use of the latter, the present study was designed to test if the conditions suitable for increased accumulation of plant-produced gas, including the gaseous plant hormone ethylene, inside a culture vessel could contribute to commercially desirable changes in aspen development. Shoot cultures of several European and hybrid (Populus tremuloides Michx. × P. tremula) aspen genotypes were studied using two different types of culture vessels: tightly sealed Petri dishes (15 × 54 mm) designed to provide restricted gas exchange (RGE) conditions, and capped (but not sealed) test tubes (150 × 18 mm) providing control conditions. Under RGE conditions, not only the positive impact of the ethylene precursors 1-aminocyclopropane-1-carboxylic-acid (ACC) and ethephon on shoot proliferation was demonstrated but also a several-fold increase, compared to the control conditions, in the mean shoot number per explant was recorded even on the hormone-free nutrient medium. Moreover, the shoots developed under RGE conditions were distinguished by superior rooting ability in the subsequent culture. These results suggest that a plant micropropagation system based on the action of plant-produced ethylene rather than of exogenous hormones is possible. -- Highlights: ► Aspen in vitro cultures were grown in different vessels. ► Small-volume vessels were used for restriction of gas exchange. ► Aspen explants produced most shoots in small-volume vessels. ► Shoot proliferation was increased due to explant response to ethylene. �

Winter Birch Trees

Science.gov (United States)

Sweeney, Debra; Rounds, Judy

2011-01-01

Trees are great inspiration for artists. Many art teachers find themselves inspired and maybe somewhat obsessed with the natural beauty and elegance of the lofty tree, and how it changes through the seasons. One such tree that grows in several regions and always looks magnificent, regardless of the time of year, is the birch. In this article, the…

Keeping trees as assets

Science.gov (United States)

Kevin T. Smith

2009-01-01

Landscape trees have real value and contribute to making livable communities. Making the most of that value requires providing trees with the proper care and attention. As potentially large and long-lived organisms, trees benefit from commitment to regular care that respects the natural tree system. This system captures, transforms, and uses energy to survive, grow,...

Decision-Tree Program

Science.gov (United States)

Buntine, Wray

1994-01-01

IND computer program introduces Bayesian and Markov/maximum-likelihood (MML) methods and more-sophisticated methods of searching in growing trees. Produces more-accurate class-probability estimates important in applications like diagnosis. Provides range of features and styles with convenience for casual user, fine-tuning for advanced user or for those interested in research. Consists of four basic kinds of routines: data-manipulation, tree-generation, tree-testing, and tree-display. Written in C language.

N-fertilization has different effects on the growth, carbon and nitrogen physiology, and wood properties of slow- and fast-growing Populus species.

Science.gov (United States)

Li, Hong; Li, Mengchun; Luo, Jie; Cao, Xu; Qu, Long; Gai, Ying; Jiang, Xiangning; Liu, Tongxian; Bai, Hua; Janz, Dennis; Polle, Andrea; Peng, Changhui; Luo, Zhi-Bin

2012-10-01

To investigate how N-fertilization affects the growth, carbon and nitrogen (N) physiology, and wood properties of poplars with contrasting growth characteristics, slow-growing (Populus popularis, Pp) and fast-growing (P. alba×P. glandulosa, Pg) poplar saplings were exposed to different N levels. Above-ground biomass, leaf area, photosynthetic rates (A), instantaneous photosynthetic nitrogen use efficiency (PNUE (i)), chlorophyll and foliar sugar concentrations were higher in Pg than in Pp. Foliar nitrate reductase (NR) activities and root glutamate synthase (GOGAT) activities were higher in Pg than in Pp as were the N amount and NUE of new shoots. Lignin contents and calorific values of Pg wood were less than that of Pp wood. N-fertilization reduced root biomass of Pg more than of Pp, but increased leaf biomass, leaf area, A, and PNUE(i) of Pg more than of Pp. Among 13 genes involved in the transport of ammonium or nitrate or in N assimilation, transcripts showed more pronounced changes to N-fertilization in Pg than in Pp. Increases in NR activities and N contents due to N-fertilization were larger in Pg than in Pp. In both species, N-fertilization resulted in lower calorific values as well as shorter and wider vessel elements/fibres. These results suggest that growth, carbon and N physiology, and wood properties are more sensitive to increasing N availability in fast-growing poplars than in slow-growing ones, which is probably due to prioritized resource allocation to the leaves and accelerated N physiological processes in fast-growing poplars under higher N levels.

Mass Mortality Events in the NW Adriatic Sea: Phase Shift from Slow- to Fast-Growing Organisms.

Directory of Open Access Journals (Sweden)

Cristina Gioia Di Camillo

Full Text Available Massive outbreaks are increasing all over the world, which are likely related to climate change. The North Adriatic Sea, a sub-basin of the Mediterranean Sea, is a shallow semi-closed sea receiving high nutrients inputs from important rivers. These inputs sustain the highest productive basin of the Mediterranean Sea. Moreover, this area shows a high number of endemisms probably due to the high diversity of environmental conditions and the conspicuous food availability. Here, we documented two massive mortalities (2009 and 2011 and the pattern of recovery of the affected biocoenoses in the next two years. Results show an impressive and fast shift of the benthic assemblage from a biocoenosis mainly composed of slow-growing and long-lived species to a biocoenosis dominated by fast-growing and short-lived species. The sponge Chondrosia reniformis, one of the key species of this assemblage, which had never been involved in previous massive mortality events in the Mediterranean Sea, reduced its coverage by 70%, and only few small specimens survived. All the damaged sponges, together with many associated organisms, were detached by rough-sea conditions, leaving large bare areas on the rocky wall. Almost three years after the disease, the survived specimens of C. reniformis did not increase significantly in size, while the bare areas were colonized by fast-growing species such as stoloniferans, hydrozoans, mussels, algae, serpulids and bryozoans. Cnidarians were more resilient than massive sponges since they quickly recovered in less than one month. In the study area, the last two outbreaks caused a reduction in the filtration efficiency of the local benthic assemblage by over 60%. The analysis of the times series of wave heights and temperature revealed that the conditions in summer 2011 were not so extreme as to justify severe mass mortality, suggesting the occurrence of other factors which triggered the disease. The long-term observations of a

Parallel peak pruning for scalable SMP contour tree computation

Energy Technology Data Exchange (ETDEWEB)

Carr, Hamish A. [Univ. of Leeds (United Kingdom); Weber, Gunther H. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Univ. of California, Davis, CA (United States); Sewell, Christopher M. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Ahrens, James P. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

2017-03-09

As data sets grow to exascale, automated data analysis and visualisation are increasingly important, to intermediate human understanding and to reduce demands on disk storage via in situ analysis. Trends in architecture of high performance computing systems necessitate analysis algorithms to make effective use of combinations of massively multicore and distributed systems. One of the principal analytic tools is the contour tree, which analyses relationships between contours to identify features of more than local importance. Unfortunately, the predominant algorithms for computing the contour tree are explicitly serial, and founded on serial metaphors, which has limited the scalability of this form of analysis. While there is some work on distributed contour tree computation, and separately on hybrid GPU-CPU computation, there is no efficient algorithm with strong formal guarantees on performance allied with fast practical performance. Here in this paper, we report the first shared SMP algorithm for fully parallel contour tree computation, withfor-mal guarantees of O(lgnlgt) parallel steps and O(n lgn) work, and implementations with up to 10x parallel speed up in OpenMP and up to 50x speed up in NVIDIA Thrust.

Ecosystem-management-based Management Models of Fast-growing and High-yield Plantation and Its Eco-economic Benefits Analysis

Institute of Scientific and Technical Information of China (English)

无

2010-01-01

The paper expounded the basic concept and principles of ecosystem management,and analyzed the state and trend of industrial plantation ecosystem management in other countries.Based on the analysis of typical case studies,the eco-economic benefits were evaluated for the management models of fast-growing and high-yield plantations.

Occurrence of leguminous trees

Energy Technology Data Exchange (ETDEWEB)

Kirkbride, J.H.; Arkcoll, D.B.A.; Turnbull, J.W.; Magalhaes, L.M.S.; Fernandes, N.P.

1984-01-01

Five papers from the symposium are presented. Kirkbride, J.H. Jr.; Legumes of the cerrado. pp 23-46 (Refs. 55) A review is given. Some 548 legume species in 59 genera are listed that have been reported from cerrado vegetation. Felker, P.; Legume trees in semi-arid and arid areas. pp 47-59 (Refs. 41) A review is given of worldwide research activities. Arkcoll, D.B.; A comparison of some fast growing species suitable for woodlots in the wet tropics. pp 61-68 (Refs. 9) Studies are described near Manaus on intensive silviculture (for fuelwood production) of Eucalyptus deglupta, Cedrelinga catanaeformis (catenaeformis), Jacaranda copaia, and Inga edulis. Turnbull, J.W.; Six phyllodinous Acacia species for planting in the humid tropical lowlands. pp 69-73 (Refs. 14) Distribution, ecology, growth, and utilization are described for A. auriculiformis, A. mangium, A. aulacocarpa, A. crassicarpa, A. cincinnata, and A. polystachya. Magalhaes, L.M.S., Fernandes, N.P.; Experimental stands of leguminous trees in the Manaus region. pp 75-79 (Refs. 8) Performance up to age 20 yr of Cedrelinga catenaeformis, Dalbergia nigra, Dinizia excelsa, Dipteryx odorata, Dipteryx sp., Diplotropis sp., Eperua bijuga, Pithecellobium racemosum, Vouacapoua pallidior, and Hymenaea sp. is described.

Tree immunity: growing old without antibodies.

Science.gov (United States)

Tobias, Peri A; Guest, David I

2014-06-01

Perennial plants need to cope with changing environments and pathogens over their lifespan. Infections are compartmentalised by localised physiological responses, and multiple apical meristems enable repair and regrowth, but genes are another crucial component in the perception and response to pathogens. In this opinion article we suggest that the mechanism for dynamic pathogen-specific recognition in long-lived plants could be explained by extending our current understanding of plant defence genes. We propose that, in addition to physiological responses, tree defence uses a three-pronged genomic approach involving: (i) gene numbers, (ii) genomic architecture, and (iii) mutation loads accumulated over long lifespans. Copyright © 2014 Elsevier Ltd. All rights reserved.

Are Mixed Tropical Tree Plantations More Resistant to Drought than Monocultures?

Directory of Open Access Journals (Sweden)

Norbert Kunert

2015-06-01

Full Text Available Tropical tree plantations usually consist of a single exotic fast growing species, but recent research describes positive effects on ecosystem functions from mixed tropical tree plantations. In this review, we present the current knowledge of drought resistance of tropical mixed species plantations and summarize preliminary evidence from a tree biodiversity experiment in Panama. Converting mono-specific stands into mixed ones may improve stand stability and might reduce increasing abiotic and biotic disturbances due to climate change. However, little is known about the extent to which tropical tree species or tropical tree communities can resist increasing disturbances in the short term, e.g., water limitations due to increasing dry season intensity or length, or about their resilience after such disturbances and their capacity to adapt to changing conditions in the long term. Studies relating drought resistance and resilience to community diversity are missing. Further, we highlight the urgent need for a multifactorial manipulative throughfall reduction experiment in tropical environments. The outcome of such studies would greatly assist the forestry sector in tropical regions to maintain highly productive and ecologically sound forest plantations in a changing climate.

Multiple-purpose trees for pastoral farming in New Zealand: with emphasis on tree legumes. [Lucerne Tree: Medick Tree

Energy Technology Data Exchange (ETDEWEB)

Davies, D J.G.; Macfarlane, R P

1979-01-01

The potential for soil conservation and agroforestry of several native and exotic legumes is discussed. Flowering period, chemical composition of leaves/pods, hardiness to frost and drought, timber value, forage potential for livestock and bees, ornamental value and other products are tabulated with information on up to 38 species. Two low-growing species that have proved useful for slope stabilization as well as forage are tree lucerne (Cytisus palmensis) and tree medick (Medicago arborea), the latter being shrubby and more suitable for cold districts. Gleditsia triacanthos is recommended as a shade and fodder tree for farm pasture.

Above- and Belowground Development of a Fast-Growing Willow Planted in Acid-Generating Mine Technosol.

Science.gov (United States)

Guittonny-Larchevêque, M; Lortie, S

2017-11-01

Surface metal mining produces large volumes of waste rocks. If they contain sulfide minerals, these rocks can generate a flow of acidic water from the mining site, known as acid mine drainage (AMD), which increases trace metals availability for plant roots. Adequate root development is crucial to decreasing planting stress and improving phytoremediation with woody species. However, techniques to improve revegetation success rarely take into account root development. An experiment was conducted at a gold mine in Quebec, Canada, to evaluate the establishment ability over 3 yr of a fast-growing willow ( Sx64) planted in acid-generating waste rocks. The main objective was to study root development in the soil profile and trace element accumulation in leaves among substrates varying in thickness (0, 20, and 40 cm of soil) and composition (organic carbon [OC] and alkaline AMD treatment sludge). Trees directly planted in waste rocks survived well (69%) but had the lowest productivity (lowest growth in height and diameter, aerial biomass, total leaf area, and root-system size). By contrast, the treatment richer in OC showed the greatest aerial biomass and total leaf area the first year; the thicker treatment resulted in the greatest growth in height and diameter, aboveground biomass, and root-system size in both the first and third years. Willow root development was restricted to soil layers during the first year, but this restriction was overcome in the third year after planting. Willow accumulation factors in leaves were below one for all investigated trace metals except for zinc (Zn), cadmium (Cd), and strontium. For Cd and Zn, concentrations increased with time in willow foliage, decreasing the potential of this willow species use for phytostabilization, despite its ability to rapidly develop extensive root systems in the mine Technosol. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Prececal amino acid digestibility of soybean cake in fast- and slow-growing broiler chickens.

Science.gov (United States)

Ganzer, C; Siegert, W; Kluth, H; Bennewitz, J; Rodehutscord, M

2017-08-01

The objective of the present study was to determine whether there are differences in prececal amino acid digestibility between commonly used slow- and fast-growing broiler strains when the regression approach is applied. ISA J-275 and Ross 308 were selected as common representatives of slow- and fast-growing broiler strains, respectively. The experimental diets with soybean cake at levels of 0, 100, and 200 g/kg were offered for ad libitum consumption between 22 and 29 d post-hatch. Titanium dioxide was used as an indigestible marker. Each treatment was tested with six pens comprising 10 birds each. Digesta samples were collected on a pen basis from the distal two-thirds of the intestine section between Meckel's diverticulum and 2 cm anterior to the ileocecal-colonic junction. The prececal amino acid digestibility of soybean cake was calculated by linear regression simultaneously for both strains. There was no significant interaction between broiler strain and inclusion level of soybean cake with respect to the prececal CP and amino acid digestibility of complete diets; there was a significant strain effect for 5 out of the 16 measured amino acids. The prececal CP and amino acid digestibility of soybean cake did not differ significantly between strains and was numerically almost identical. The results of the present study provide evidence of the transferability between broiler strains of prececal amino acid digestibility data, determined using the regression approach, thus improving the accuracy of diet formulation without drawbacks. © 2017 Poultry Science Association Inc.

Flowering Trees

Indian Academy of Sciences (India)

Srimath

Grevillea robusta A. Cunn. ex R. Br. (Sil- ver Oak) of Proteaceae is a daintily lacy ornamental tree while young and growing into a mighty tree (45 m). Young shoots are silvery grey and the leaves are fern- like. Flowers are golden-yellow in one- sided racemes (10 cm). Fruit is a boat- shaped, woody follicle.

Willow trees from heavy metals phytoextraction as energy crops

International Nuclear Information System (INIS)

Šyc, Michal; Pohořelý, Michael; Kameníková, Petra; Habart, Jan; Svoboda, Karel; Punčochář, Miroslav

2012-01-01

Phytoextraction ability of some fast growing plant species leads to the idea of connecting biomass production with soil remediation of contaminated industrial zones and regions. This biomass will contain significant amount of heavy metals and its energetic utilization has to be considered carefully to minimize negative environmental impacts. This study was focused on potential disposal methods of willow trees contaminated by heavy metals (Cd, Cu, Pb, Zn) with the emphasis on energetic utilization of biomass. Composting seems to be suitable pre-treatment method resulting in decrease of heavy metals leachability and biomass weight reduction. The possibility of willow trees application for energetic purposes was investigated and consequently incineration tests of willow trees samples in fluidized bed reactor were realized. Distribution of selected heavy metals in different ash fractions and treatment methods of produced ashes were studied as well. -- Highlights: ► Composting is an appropriate pre-treatment method for phytoextraction crops. ► Fluidized bed combustion is suitable disposal method of phytoextraction crops. ► Ashes from phytoextraction crops combustion cannot be used as fertilizers.

Cellulose factories: advancing bioenergy production from forest trees.

Science.gov (United States)

Mizrachi, Eshchar; Mansfield, Shawn D; Myburg, Alexander A

2012-04-01

Fast-growing, short-rotation forest trees, such as Populus and Eucalyptus, produce large amounts of cellulose-rich biomass that could be utilized for bioenergy and biopolymer production. Major obstacles need to be overcome before the deployment of these genera as energy crops, including the effective removal of lignin and the subsequent liberation of carbohydrate constituents from wood cell walls. However, significant opportunities exist to both select for and engineer the structure and interaction of cell wall biopolymers, which could afford a means to improve processing and product development. The molecular underpinnings and regulation of cell wall carbohydrate biosynthesis are rapidly being elucidated, and are providing tools to strategically develop and guide the targeted modification required to adapt forest trees for the emerging bioeconomy. Much insight has already been gained from the perturbation of individual genes and pathways, but it is not known to what extent the natural variation in the sequence and expression of these same genes underlies the inherent variation in wood properties of field-grown trees. The integration of data from next-generation genomic technologies applied in natural and experimental populations will enable a systems genetics approach to study cell wall carbohydrate production in trees, and should advance the development of future woody bioenergy and biopolymer crops.

A new tree classification system for southern hardwoods

Science.gov (United States)

James S. Meadows; Daniel A. Jr. Skojac

2008-01-01

A new tree classification system for southern hardwoods is described. The new system is based on the Putnam tree classification system, originally developed by Putnam et al., 1960, Management ond inventory of southern hardwoods, Agriculture Handbook 181, US For. Sew., Washington, DC, which consists of four tree classes: (1) preferred growing stock, (2) reserve growing...

Interplay of growth rate and xylem plasticity for optimal coordination of carbon and hydraulic economies in Fraxinus ornus trees.

Science.gov (United States)

Petit, Giai; Savi, Tadeja; Consolini, Martina; Anfodillo, Tommaso; Nardini, Andrea

2016-11-01

Efficient leaf water supply is fundamental for assimilation processes and tree growth. Renovating the architecture of the xylem transport system requires an increasing carbon investment while growing taller, and any deficiency of carbon availability may result in increasing hydraulic constraints to water flow. Therefore, plants need to coordinate carbon assimilation and biomass allocation to guarantee an efficient and safe long-distance transport system. We tested the hypothesis that reduced branch elongation rates together with carbon-saving adjustments of xylem anatomy hydraulically compensate for the reduction in biomass allocation to xylem. We measured leaf biomass, hydraulic and anatomical properties of wood segments along the main axis of branches in 10 slow growing (SG) and 10 fast growing (FG) Fraxinus ornus L. trees. Branches of SG trees had five times slower branch elongation rate (7 vs 35 cm year -1 ), and produced a higher leaf biomass (P trees in terms of leaf-specific conductivity (P > 0.05) and xylem safety (Ψ 50 ≈ -3.2 MPa). Slower elongation rate coupled with thinner annual rings and larger vessels allows the reduction of carbon costs associated with growth, while maintaining similar leaf-specific conductivity and xylem safety. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Resource investments in reproductive growth proportionately limit investments in whole-tree vegetative growth in young olive trees with varying crop loads.

Science.gov (United States)

Rosati, Adolfo; Paoletti, Andrea; Al Hariri, Raeed; Morelli, Alessio; Famiani, Franco

2018-02-21

It has long been debated whether tree growth is source limited, or whether photosynthesis is adjusted to the actual sink demand, directly regulated by internal and environmental factors. Many studies support both possibilities, but no studies have provided quantitative data at the whole-tree level, across different cultivars and fruit load treatments. This study investigated the effect of different levels of reproductive growth on whole-tree biomass growth across two olive cultivars with different growth rates (i.e., Arbequina, slow-growing and Frantoio, fast-growing), over 2 years. Young trees of both cultivars were completely deflowered either in 2014, 2015, both years or never, providing a range of levels of cumulated reproductive growth over the 2 years. Total vegetative dry matter growth over the 2 years was assessed by destructive sampling (whole tree). Vegetative growth increased significantly less in fruiting trees, however, the total of vegetative and reproductive growth did not differ significantly for any treatment or cultivar. Vegetative growth over the 2 years was closely (R2 = 0.89) and inversely related to reproductive growth across all treatments and cultivars. When using data from 2015 only, the regression improved further (i.e., R2 = 0.99). When biomass was converted into grams of glucose equivalents, based on the chemical composition of the different parts, the results indicated that for every gram of glucose equivalent invested in reproductive growth, vegetative growth was reduced by 0.73-0.78 g of glucose equivalent. This indicates that competition for resources played a major role in determining tree growth, but also that photosynthesis was probably also enhanced at increasing fruit load (or downregulated at decreasing fruit load). The leaf area per unit of trunk cross sectional area increased with deflowering (i.e., decreased with reproductive growth), suggesting that water relations might have limited photosynthesis in deflowered plants

Effects of ambient temperature and early open-field response on the behaviour, feed intake and growth of fast- and slow-growing broiler strains.

Science.gov (United States)

Nielsen, B L

2012-09-01

Increased activity improves broiler leg health, but also increases the heat production of the bird. This experiment investigated the effects of early open-field activity and ambient temperature on the growth and feed intake of two strains of broiler chickens. On the basis of the level of activity in an open-field test on day 3 after hatching, fast-growing Ross 208 and slow-growing i657 chickens were allocated on day 13 to one of the 48 groups. Each group included either six active or six passive birds from each strain and the groups were housed in floor-pens littered with wood chips and fitted with two heat lamps. Each group was fed ad libitum and subjected to one of the three temperature treatments: two (HH; 26°C), one (HC; 16°C to 26°C) or no (CC; 16°C) heat lamps turned on. Production and behavioural data were collected every 2 weeks until day 57. For both strains, early open-field activity had no significant effects on their subsequent behaviour or on any of the production parameters measured, and overall, the slow-growing strain was more active than the fast-growing strain. Ambient temperature had significant effects on production measures for i657 broilers, with CC chickens eating and weighing more, and with a less efficient feed conversion than HH chickens, with HC birds intermediate. A similar effect was found for Ross 208 only for feed intake from 27 to 41 days of age. Ross 208 chickens distributed themselves in the pen with a preference for cooler areas in the hottest ambient temperature treatments. In contrast, the behaviour of the slow-growing strain appeared to be relatively unaffected by the ambient temperature. In conclusion, fast-growing broilers use behavioural changes when trying to adapt to warm environments, whereas slow-growing broilers use metabolic changes to adapt to cooler ambient temperatures.

Adjustable chain trees for proteins

DEFF Research Database (Denmark)

Winter, Pawel; Fonseca, Rasmus

2012-01-01

A chain tree is a data structure for changing protein conformations. It enables very fast detection of clashes and free energy potential calculations. A modified version of chain trees that adjust themselves to the changing conformations of folding proteins is introduced. This results in much...... tighter bounding volume hierarchies and therefore fewer intersection checks. Computational results indicate that the efficiency of the adjustable chain trees is significantly improved compared to the traditional chain trees....

Fast method of constructing image correlations to build a free network based on image multivocabulary trees

Science.gov (United States)

Zhan, Zongqian; Wang, Xin; Wei, Minglu

2015-05-01

In image-based three-dimensional (3-D) reconstruction, one topic of growing importance is how to quickly obtain a 3-D model from a large number of images. The retrieval of the correct and relevant images for the model poses a considerable technological challenge. The "image vocabulary tree" has been proposed as a method to search for similar images. However, a significant drawback of this approach is identified in its low time efficiency and barely satisfactory classification result. The method proposed is inspired by, and improves upon, some recent methods. Specifically, vocabulary quality is considered and multivocabulary trees are designed to improve the classification result. A marked improvement was, indeed, observed in our evaluation of the proposed method. To improve time efficiency, graphics processing unit (GPU) computer unified device architecture parallel computation is applied in the multivocabulary trees. The results of the experiments showed that the GPU was three to four times more efficient than the enumeration matching and CPU methods when the number of images is large. This paper presents a reliable reference method for the rapid construction of a free network to be used for the computing of 3-D information.

Geodesic atlas-based labeling of anatomical trees

DEFF Research Database (Denmark)

Feragen, Aasa; Petersen, Jens; Owen, Megan

2015-01-01

We present a fast and robust atlas-based algorithm for labeling airway trees, using geodesic distances in a geometric tree-space. Possible branch label configurations for an unlabeled airway tree are evaluated using distances to a training set of labeled airway trees. In tree-space, airway tree t...... equally complete airway trees, and comparable in performance to that of experts in pulmonary medicine, emphasizing the suitability of the labeling algorithm for clinical use....

Integration of biotechnology, visualisation technology and robot technology for automated mass propagation af elite trees

DEFF Research Database (Denmark)

Find, Jens

for the production of Christmas trees and Sitka spruce has gained renewed interest as a fast growing species for the production biofuels. These species are used as model systems for the development of automated plant production based on robot and visualisation technology. The commercial aspect of the project aims at......: 1) the market for cloned elite plants in the forestry sector and 2) the market for robot technology in the production of plants for the forestry sector....

A Fast Framework for Abrupt Change Detection Based on Binary Search Trees and Kolmogorov Statistic

Science.gov (United States)

Qi, Jin-Peng; Qi, Jie; Zhang, Qing

2016-01-01

Change-Point (CP) detection has attracted considerable attention in the fields of data mining and statistics; it is very meaningful to discuss how to quickly and efficiently detect abrupt change from large-scale bioelectric signals. Currently, most of the existing methods, like Kolmogorov-Smirnov (KS) statistic and so forth, are time-consuming, especially for large-scale datasets. In this paper, we propose a fast framework for abrupt change detection based on binary search trees (BSTs) and a modified KS statistic, named BSTKS (binary search trees and Kolmogorov statistic). In this method, first, two binary search trees, termed as BSTcA and BSTcD, are constructed by multilevel Haar Wavelet Transform (HWT); second, three search criteria are introduced in terms of the statistic and variance fluctuations in the diagnosed time series; last, an optimal search path is detected from the root to leaf nodes of two BSTs. The studies on both the synthetic time series samples and the real electroencephalograph (EEG) recordings indicate that the proposed BSTKS can detect abrupt change more quickly and efficiently than KS, t-statistic (t), and Singular-Spectrum Analyses (SSA) methods, with the shortest computation time, the highest hit rate, the smallest error, and the highest accuracy out of four methods. This study suggests that the proposed BSTKS is very helpful for useful information inspection on all kinds of bioelectric time series signals. PMID:27413364

A Fast Framework for Abrupt Change Detection Based on Binary Search Trees and Kolmogorov Statistic.

Science.gov (United States)

Qi, Jin-Peng; Qi, Jie; Zhang, Qing

2016-01-01

Change-Point (CP) detection has attracted considerable attention in the fields of data mining and statistics; it is very meaningful to discuss how to quickly and efficiently detect abrupt change from large-scale bioelectric signals. Currently, most of the existing methods, like Kolmogorov-Smirnov (KS) statistic and so forth, are time-consuming, especially for large-scale datasets. In this paper, we propose a fast framework for abrupt change detection based on binary search trees (BSTs) and a modified KS statistic, named BSTKS (binary search trees and Kolmogorov statistic). In this method, first, two binary search trees, termed as BSTcA and BSTcD, are constructed by multilevel Haar Wavelet Transform (HWT); second, three search criteria are introduced in terms of the statistic and variance fluctuations in the diagnosed time series; last, an optimal search path is detected from the root to leaf nodes of two BSTs. The studies on both the synthetic time series samples and the real electroencephalograph (EEG) recordings indicate that the proposed BSTKS can detect abrupt change more quickly and efficiently than KS, t-statistic (t), and Singular-Spectrum Analyses (SSA) methods, with the shortest computation time, the highest hit rate, the smallest error, and the highest accuracy out of four methods. This study suggests that the proposed BSTKS is very helpful for useful information inspection on all kinds of bioelectric time series signals.

Determination of Heavy Metals in Almonds and Mistletoe as a Parasite Growing on the Almond Tree Using ICP-OES or ICP-MS.

Science.gov (United States)

Kamar, Veysi; Dağalp, Rukiye; Taştekin, Mustafa

2017-12-28

In this study, the elements of Al, As, B, Ba, Ca, Cd, Co, Cr, Cu, Fe, K, Mg, Mn, Mo, Ni, Sr, Pb, Ti, and Zn were determined in the leaves, fruits, and branches of mistletoe, (Viscum albüm L.), used as a medicinal plant, and in the leaves, branches and barks of almond tree which mistletoe grows on. The aim of the study is to investigate whether the mistletoe are more absorbent than the almond tree in terms of the heavy metal contents and the determination of the amount of the elements penetrated into the mistletoe from the almond tree. ICP-MS (inductively coupled plasma-mass spectrometry) was used for the analysis of As, Cd, Mo, and Pb, whereas ICP-OES (inductively coupled plasma optical emission spectrometry) was used for the other elements. The results obtained were statistically evaluated at 95% confidence level. Within the results obtained in this study, it was determined whether there is a significant difference between metal elements in almond tree and mistletoe, or not. As a result, it was observed that there were higher contents of B, Ba, K, Mg, and Zn in the mistletoe than in the almond tree. K was found much higher than other elements in the mistletoe. On the other hand, Al, As, Ca, Cd, Cr, Cu, Fe, Mo, Ni, Sr, Pb, and Ti contents were determined to be more in almond tree than mistletoe.

Genomic and proteomic analysis with dynamically growing self ...

African Journals Online (AJOL)

The system proposed here is a tree structure, a new hierarchical clustering algorithm called a dynamically growing self-organizing tree (DGSOT) algorithm, which overcomes drawbacks of traditional hierarchical clustering algorithms. The DGSOT algorithm combines horizontal and vertical growth to construct a mutlifurcating ...

Fast-slow continuum and reproductive strategies structure plant life-history variation worldwide.

Science.gov (United States)

Salguero-Gómez, Roberto; Jones, Owen R; Jongejans, Eelke; Blomberg, Simon P; Hodgson, David J; Mbeau-Ache, Cyril; Zuidema, Pieter A; de Kroon, Hans; Buckley, Yvonne M

2016-01-05

The identification of patterns in life-history strategies across the tree of life is essential to our prediction of population persistence, extinction, and diversification. Plants exhibit a wide range of patterns of longevity, growth, and reproduction, but the general determinants of this enormous variation in life history are poorly understood. We use demographic data from 418 plant species in the wild, from annual herbs to supercentennial trees, to examine how growth form, habitat, and phylogenetic relationships structure plant life histories and to develop a framework to predict population performance. We show that 55% of the variation in plant life-history strategies is adequately characterized using two independent axes: the fast-slow continuum, including fast-growing, short-lived plant species at one end and slow-growing, long-lived species at the other, and a reproductive strategy axis, with highly reproductive, iteroparous species at one extreme and poorly reproductive, semelparous plants with frequent shrinkage at the other. Our findings remain consistent across major habitats and are minimally affected by plant growth form and phylogenetic ancestry, suggesting that the relative independence of the fast-slow and reproduction strategy axes is general in the plant kingdom. Our findings have similarities with how life-history strategies are structured in mammals, birds, and reptiles. The position of plant species populations in the 2D space produced by both axes predicts their rate of recovery from disturbances and population growth rate. This life-history framework may complement trait-based frameworks on leaf and wood economics; together these frameworks may allow prediction of responses of plants to anthropogenic disturbances and changing environments.

TreeCluster: Massively scalable transmission clustering using phylogenetic trees

OpenAIRE

Moshiri, Alexander

2018-01-01

Background: The ability to infer transmission clusters from molecular data is critical to designing and evaluating viral control strategies. Viral sequencing datasets are growing rapidly, but standard methods of transmission cluster inference do not scale well beyond thousands of sequences. Results: I present TreeCluster, a cross-platform tool that performs transmission cluster inference on a given phylogenetic tree orders of magnitude faster than existing inference methods and supports multi...

Motivation and ability to walk for a food reward in fast- and slow-growing broilers to 12 weeks of age

NARCIS (Netherlands)

Bokkers, E.A.M.; Koene, P.

2004-01-01

Poor physical abilities of broilers may prevent them from performing behaviours for which they are motivated. The aim of this study was to measure the influence of physical ability and motivation on the performance of broilers in short physical tasks. We tested birds from a fast- and a slow-growing

Human action analysis with randomized trees

CERN Document Server

Yu, Gang; Liu, Zicheng

2014-01-01

This book will provide a comprehensive overview on human action analysis with randomized trees. It will cover both the supervised random trees and the unsupervised random trees. When there are sufficient amount of labeled data available, supervised random trees provides a fast method for space-time interest point matching. When labeled data is minimal as in the case of example-based action search, unsupervised random trees is used to leverage the unlabelled data. We describe how the randomized trees can be used for action classification, action detection, action search, and action prediction.

Development of a gene cloning system in a fast-growing and moderately thermophilic Streptomyces species and heterologous expression of Streptomyces antibiotic biosynthetic gene clusters

Science.gov (United States)

2011-01-01

Background Streptomyces species are a major source of antibiotics. They usually grow slowly at their optimal temperature and fermentation of industrial strains in a large scale often takes a long time, consuming more energy and materials than some other bacterial industrial strains (e.g., E. coli and Bacillus). Most thermophilic Streptomyces species grow fast, but no gene cloning systems have been developed in such strains. Results We report here the isolation of 41 fast-growing (about twice the rate of S. coelicolor), moderately thermophilic (growing at both 30°C and 50°C) Streptomyces strains, detection of one linear and three circular plasmids in them, and sequencing of a 6996-bp plasmid, pTSC1, from one of them. pTSC1-derived pCWH1 could replicate in both thermophilic and mesophilic Streptomyces strains. On the other hand, several Streptomyces replicons function in thermophilic Streptomyces species. By examining ten well-sporulating strains, we found two promising cloning hosts, 2C and 4F. A gene cloning system was established by using the two strains. The actinorhodin and anthramycin biosynthetic gene clusters from mesophilic S. coelicolor A3(2) and thermophilic S. refuineus were heterologously expressed in one of the hosts. Conclusions We have developed a gene cloning and expression system in a fast-growing and moderately thermophilic Streptomyces species. Although just a few plasmids and one antibiotic biosynthetic gene cluster from mesophilic Streptomyces were successfully expressed in thermophilic Streptomyces species, we expect that by utilizing thermophilic Streptomyces-specific promoters, more genes and especially antibiotic genes clusters of mesophilic Streptomyces should be heterologously expressed. PMID:22032628

Tree Transduction Tools for Cdec

Directory of Open Access Journals (Sweden)

Austin Matthews

2014-09-01

Full Text Available We describe a collection of open source tools for learning tree-to-string and tree-to-tree transducers and the extensions to the cdec decoder that enable translation with these. Our modular, easy-to-extend tools extract rules from trees or forests aligned to strings and trees subject to different structural constraints. A fast, multithreaded implementation of the Cohn and Blunsom (2009 model for extracting compact tree-to-string rules is also included. The implementation of the tree composition algorithm used by cdec is described, and translation quality and decoding time results are presented. Our experimental results add to the body of evidence suggesting that tree transducers are a compelling option for translation, particularly when decoding speed and translation model size are important.

Investigation of Growth and Survival of Transplanted Plane and Pine Trees According to IBA Application, Tree Age, Transplanting Time and Method

Directory of Open Access Journals (Sweden)

N. Etemadi

2015-03-01

Full Text Available The major problems in transplanting the landscape trees are high level of mortality and low establishment rate of transplanted trees, especially in the first year. In order to achieve the best condition for successful transplanting of pine and plane trees in Isfahan landscape, the present study was carried out based on a completely randomized block design with four replicates and three treatments including transplanting method (balled and burlapped and bare root, tree age (immature and mature and IBA application (0 and 150 mg/L. Trees were transplanted during 2009 and 2010 in three times (dormant season, early and late growing season. Survival rate and Relative Growth Rate index based on tree height (RGRH and trunk diameter (RGRD were measured during the first and second years. Trees transplanted early in the growing season showed the most survival percentage during the two years, as compared to other transplanting dates. Survival of Balled and burlapped and immature transplanted trees was significantly greater than bare root or mature trees. The significant effect of age treatment was continued in the second year. IBA treatment had no effect on survival rate of the studied species. Balled and burlapped and immature transplanted pine trees also had higher RGRH and RGRD compared to bare root or mature trees. According to the results of this study, early growing season is the best time for transplanting pine and plane trees. Also, transplanting of immature trees using balled and burlapped method is recommended to increase the survival and establishment rate.

Glulam Properties of Fast-growing Species Using Mahogany Tannin Adhesive

Directory of Open Access Journals (Sweden)

Andi Sri Rahayu Diza Lestari

2015-09-01

Full Text Available Manufacturing glued laminated timber (glulam can help overcome the limited availability of large-sized timber, and the use of bio-adhesives may resolve environmental problems associated with synthetic adhesives containing high formaldehyde contents. Tannin adhesive is a bio-adhesive that can be used as alternative glue in the manufacture of glulam. The purpose of this study was to determine the physical and mechanical properties of glulam made with mahogany (Swietenia sp. tannin adhesive and wood from three fast-growing species, namely pine (Pinus merkusii, jabon (Anthocephalus cadamba, and sengon (Falcataria moluccana. Glulam (3 cm × 6 cm × 120 cm in thickness, width, and length, respectively was manufactured with three layers of lamina. The physical and mechanical properties of the glulams were tested based on relevant standards. The results showed that pine glulam fulfilled the standard for the modulus of rupture and modulus of elasticity, while sengon glulam met the standard for shear strength. In the delamination test, sengon glulam was resistant to immersion in cold water and hot water. All glulams had low formaldehyde emission levels and therefore fulfilled the standard requirements. The results showed that the tannin adhesive from mahogany bark was equal in quality to methylene diphenyl di-isocyanate for glulam manufacturing.

DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments.

Science.gov (United States)

Kelly, Steven; Maini, Philip K

2013-01-01

The rapidly growing availability of genome information has created considerable demand for both fast and accurate phylogenetic inference algorithms. We present a novel method called DendroBLAST for reconstructing phylogenetic dendrograms/trees from protein sequences using BLAST. This method differs from other methods by incorporating a simple model of sequence evolution to test the effect of introducing sequence changes on the reliability of the bipartitions in the inferred tree. Using realistic simulated sequence data we demonstrate that this method produces phylogenetic trees that are more accurate than other commonly-used distance based methods though not as accurate as maximum likelihood methods from good quality multiple sequence alignments. In addition to tests on simulated data, we use DendroBLAST to generate input trees for a supertree reconstruction of the phylogeny of the Archaea. This independent analysis produces an approximate phylogeny of the Archaea that has both high precision and recall when compared to previously published analysis of the same dataset using conventional methods. Taken together these results demonstrate that approximate phylogenetic trees can be produced in the absence of multiple sequence alignments, and we propose that these trees will provide a platform for improving and informing downstream bioinformatic analysis. A web implementation of the DendroBLAST method is freely available for use at http://www.dendroblast.com/.

DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments.

Directory of Open Access Journals (Sweden)

Steven Kelly

Full Text Available The rapidly growing availability of genome information has created considerable demand for both fast and accurate phylogenetic inference algorithms. We present a novel method called DendroBLAST for reconstructing phylogenetic dendrograms/trees from protein sequences using BLAST. This method differs from other methods by incorporating a simple model of sequence evolution to test the effect of introducing sequence changes on the reliability of the bipartitions in the inferred tree. Using realistic simulated sequence data we demonstrate that this method produces phylogenetic trees that are more accurate than other commonly-used distance based methods though not as accurate as maximum likelihood methods from good quality multiple sequence alignments. In addition to tests on simulated data, we use DendroBLAST to generate input trees for a supertree reconstruction of the phylogeny of the Archaea. This independent analysis produces an approximate phylogeny of the Archaea that has both high precision and recall when compared to previously published analysis of the same dataset using conventional methods. Taken together these results demonstrate that approximate phylogenetic trees can be produced in the absence of multiple sequence alignments, and we propose that these trees will provide a platform for improving and informing downstream bioinformatic analysis. A web implementation of the DendroBLAST method is freely available for use at http://www.dendroblast.com/.

Projections for the changes in growing season length of tree-ring formation on the Tibetan Plateau based on CMIP5 model simulations.

Science.gov (United States)

He, Minhui; Yang, Bao; Shishov, Vladimir; Rossi, Sergio; Bräuning, Achim; Ljungqvist, Fredrik Charpentier; Grießinger, Jussi

2018-04-01

The response of the growing season to the ongoing global warming has gained considerable attention. In particular, how and to which extent the growing season will change during this century is essential information for the Tibetan Plateau, where the observed warming trend has exceeded the global mean. In this study, the 1960-2014 mean length of the tree-ring growing season (LOS) on the Tibetan Plateau was derived from results of the Vaganov-Shashkin oscilloscope tree growth model, based on 20 composite study sites and more than 3000 trees. Bootstrap and partial correlations were used to evaluate the most significant climate factors determining the LOS in the study region. Based on this relationship, we predicted the future variability of the LOS under three emission scenarios (Representative Concentration Pathways (RCP) 2.6, 6.0, and 8.5, representing different concentrations of greenhouse gasses) derived from 17 Earth system models participating in the Coupled Model Intercomparison Project Phase 5 (CMIP5). The averaged LOS on the Tibetan Plateau is 103 days during the period 1960-2014, and April-September minimum temperature is the strongest factor controlling the LOS. We detected a general increase in the LOS over the twenty-first century under all the three selected scenarios. By the middle of this century, LOS will extend by about 3 to 4 weeks under the RCPs 2.6 and 6.0, and by more than 1 month (37 days) under the RCP 8.5, relative to the baseline period 1960-2014. From the middle to the end of the twenty-first century, LOS will further extend by about 3 to 4 weeks under the RCPs 6.0 and 8.5, respectively. Under the RCP 2.6 scenario, however, the extension reaches a plateau at around 2050 and about 2 weeks LOS extension. In total, we found an average rate of 2.1, 3.6, and 5.0 days decade -1 for the LOS extension from 2015 to 2100 under the RCPs 2.6, 6.0, and 8.5, respectively. However, such estimated LOS extensions may be offset by other ecological

Leaf Protein and Mineral Concentrations across the "Miracle Tree" Genus Moringa.

Science.gov (United States)

Olson, Mark E; Sankaran, Renuka P; Fahey, Jed W; Grusak, Michael A; Odee, David; Nouman, Wasif

2016-01-01

The moringa tree Moringa oleifera is a fast-growing, drought-resistant tree cultivated across the lowland dry tropics worldwide for its nutritious leaves. Despite its nutritious reputation, there has been no systematic survey of the variation in leaf nutritional quality across M. oleifera grown worldwide, or of the other species of the genus. To guide informed use of moringa, we surveyed protein, macro-, and micro- nutrients across 67 common garden samples of 12 Moringa taxa, including 23 samples of M. oleifera. Moringa oleifera, M. concanensis, M. stenopetala, an M. concanensis X oleifera hybrid, and M. longituba were highest in protein, with M. ruspoliana having the highest calcium levels. A protein-dry leaf mass tradeoff may preclude certain breeding possibilities, e.g. maximally high protein with large leaflets. These findings identify clear priorities and limitations for improved moringa varieties with traits such as high protein, calcium, or ease of preparation.

Fabrication of compact and stable perovskite films with optimized precursor composition in the fast-growing procedure

Energy Technology Data Exchange (ETDEWEB)

Liu, Tanghao; Zhou, Yuanyuan; Hu, Qin; Chen, Ke; Zhang, Yifei; Yang, Wenqiang; Wu, Jiang; Ye, Fengjun; Luo, Deying; Zhu, Kai; Padture, Nitin P.; Liu, Feng; Russell, Thomas; Zhu, Rui; Gong, Qihuang

2017-06-02

The fast-growing procedure (FGP) provides a simple, high-yield and lead (Pb)-release free method to prepare perovskite films. In the FGP, the ultra-dilute perovskite precursor solution is drop-cast onto a hot (~240 degrees C) substrate, where a perovskite film grows immediately accompanied by the rapid evaporation of the host solvent. In this process, all the raw materials in the precursor solution are deposited into the final perovskite film. The potential pollution caused by Pb can be significantly reduced. Properties of the FGP-processed perovskite films can be modulated by the precursor composition. While CH3NH3Cl (MACl) affects the crystallization process and leads to full surface coverage, CH(NH2)2I (FAI) enhances the thermal stability of the film. Based on the optimized precursor composition of PbI2(1-x)FAI xMACl, x=0.75, FGP-processed planar heterojunction perovskite solar cells exhibit power conversion efficiencies (PCEs) exceeding 15% with suppressed hysteresis and excellent reproducibility.

Field data analysis of asphalt road paving damages caused by tree roots

Science.gov (United States)

Weissteiner, Clemens; Rauch, Hans Peter

2015-04-01

Tree root damages are a frequent problem along paved cycling paths and service roads of rivers and streams. Damages occur mostly on streets with thin asphalt layers and especially in the upper part of the pavement structure. The maintainers of these roads are faced with frequent and high annual repair costs in order to guarantee traffic safety and pleasant cycling conditions. The focus of this research project is to get an insight in the processes governing the growth of the tree roots in asphalt layers and to develop test methods to avoid rood penetration into the road structure. Tree vegetation has been analysed selectively along a 300 km long cycle and service path of the Danube River in the region of Austria. Tree characteristics, topographic as well as hydrologic conditions have been analysed at 119 spots with different asphalt damage intensities. On 5 spots additional investigations on the root growth characteristics where performed. First results underline a high potential damage of pioneer trees which are growing naturally along rivers. Mostly, local occurring fast growing tree species penetrated the road layer structure. In a few cases other tree species where as well responsible for road structure damages. The age respectively the size of the trees didn't seem to influence significantly the occurrence of asphalt damages. Road structure damages were found to appear unaffected by hydrologic or topographic conditions. However, results have to be interpreted with care as the investigations represent a temporally limited view of the problem situation. The investigations of the root growth characteristics proved that tree roots penetrate the road structure mostly between the gravel sublayer and the asphalt layer as the layers it selves don't allow a penetration because of their high compaction. Furthermore roots appear to be attracted by condensed water at the underside of the asphalt layer. Further steps of the research project imply testing of different

Maintenance of carbohydrate transport in tall trees

DEFF Research Database (Denmark)

Savage, Jessica A.; Beecher, Sierra D.; Clerx, Laura

2017-01-01

Trees present a critical challenge to long-distance transport because as a tree grows in height and the transport pathway increases in length, the hydraulic resistance of the vascular tissue should increase. This has led many to question whether trees can rely on a passive transport mechanism to ...... that reduce transport resistance. As a result, the key to the long-standing mystery of how trees maintain phloem transport as they increase in size lies in the structure of the phloem and its ability to change hydraulic properties with plant height.......Trees present a critical challenge to long-distance transport because as a tree grows in height and the transport pathway increases in length, the hydraulic resistance of the vascular tissue should increase. This has led many to question whether trees can rely on a passive transport mechanism...... in the leaves of a tall tree in situ. Across nine deciduous species, we find that hydraulic resistance in the phloem scales inversely with plant height because of a shift in sieve element structure along the length of individual trees. This scaling relationship seems robust across multiple species despite large...

CENTRAL KALIMANTAN’S FAST GROWING SPECIES: SUITABILITY FOR PULP AND PAPER

Directory of Open Access Journals (Sweden)

Danang Sudarwoko Adi

2015-04-01

Full Text Available Recent studies of fast growing species grown in PT. Sari Bumi Kusuma, Central Kalimantan, show that based on their fiber dimensions there are five species, namely Endospermum diadenum, Dillenia spp., Adinandra dumosa, Adiandra sp., and Nauclea junghuhnii with good potential for pulp and paper production. The fiber length of those five wood species are was more than 2,200 µm on average. This paper studies the physical properties, fiber dimensions and their chemical contents to predict the paper and pulp quality. The result shows that all of the species were classified in the medium to high density category. All species were classified into the first class quality for pulp and paper. Based on chemical contents, Dillenia sp. is the most suitable species due to its high value of holocellulose and a-cellulose, low lignin content, and its fiber length is about 3,119 µm on average. A. dumosa also has good opportunities because it had the longest fiber lengths (3,137 µm on average and high value of holocellulose, even though it has the highest lignin content. While Nuclea junghuhnii is less suitable due to low values of holocellulose and a-cellulose.

Drivers of Tree Species Effects on Phosphorus and Cation Cycling in Plantations at La Selva Biological Station, Costa Rica

Science.gov (United States)

Russell, A. E.

2014-12-01

Fast-growing trees in secondary forests and plantations in the humid tropics play an important role in the atmospheric CO2 balance owing to their high rates of carbon sequestration. Because plants require nutrients to sustain high CO2 uptake, differences among tree species in traits related to nutrient uptake, retention and recycling could influence ecosystem-scale carbon cycling. A better understanding of the relationships among plant traits, nutrient and carbon cycling will thus improve ecosystem- to global scale modeling of effects of vegetation change on carbon cycling. In an experimental setting in which state factors were similar among four species of tropical trees situated on an Oxisol in replicated, 25-yr-old, mono-dominant plantations, I evaluated various drivers of aboveground storage of phosphorus (P) and cations, measuring nutrient fluxes in litterfall and fine-root growth and storage in biomass and soil to 1-m depth. Because fine roots increase the capacity to scavenge nutrients already on exchange sites within the soil environment, I hypothesized that P and cation uptake would be correlated directly with fine-root growth. The four tree species in this experiment, Hieronyma alchorneoides, Pentaclethra macroloba, Virola koschnyi, and Vochysia guatemalensis differed significantly in net cation uptake over the first 25 years of growth (P = 0.013, Ca; P >0.0001, Mg, Mn, K, Al, Fe, and Sr). For all cations, aboveground tree biomass was highly correlated with fine-root ingrowth length, with P values >0.0001 for all cations except Ca (P = 0.013). In contrast for P, differences among species were only marginally significant (P = 0.062). Similarly, P in aboveground tree biomass was marginally correlated with fine-root ingrowth (P = 0.068). Neither cation nor P uptake was correlated with measures of available P and cations, organic or total P in surface soil. For P, the less significant correlation with fine-root growth suggests that some other mechanism, such

Drawing Contour Trees in the Plane.

Science.gov (United States)

Heine, C; Schneider, D; Carr, Hamish; Scheuermann, G

2011-11-01

The contour tree compactly describes scalar field topology. From the viewpoint of graph drawing, it is a tree with attributes at vertices and optionally on edges. Standard tree drawing algorithms emphasize structural properties of the tree and neglect the attributes. Applying known techniques to convey this information proves hard and sometimes even impossible. We present several adaptions of popular graph drawing approaches to the problem of contour tree drawing and evaluate them. We identify five esthetic criteria for drawing contour trees and present a novel algorithm for drawing contour trees in the plane that satisfies four of these criteria. Our implementation is fast and effective for contour tree sizes usually used in interactive systems (around 100 branches) and also produces readable pictures for larger trees, as is shown for an 800 branch example.

Leaf Protein and Mineral Concentrations across the "Miracle Tree" Genus Moringa.

Directory of Open Access Journals (Sweden)

Mark E Olson

Full Text Available The moringa tree Moringa oleifera is a fast-growing, drought-resistant tree cultivated across the lowland dry tropics worldwide for its nutritious leaves. Despite its nutritious reputation, there has been no systematic survey of the variation in leaf nutritional quality across M. oleifera grown worldwide, or of the other species of the genus. To guide informed use of moringa, we surveyed protein, macro-, and micro- nutrients across 67 common garden samples of 12 Moringa taxa, including 23 samples of M. oleifera. Moringa oleifera, M. concanensis, M. stenopetala, an M. concanensis X oleifera hybrid, and M. longituba were highest in protein, with M. ruspoliana having the highest calcium levels. A protein-dry leaf mass tradeoff may preclude certain breeding possibilities, e.g. maximally high protein with large leaflets. These findings identify clear priorities and limitations for improved moringa varieties with traits such as high protein, calcium, or ease of preparation.

Animals and trees: food for thought

Energy Technology Data Exchange (ETDEWEB)

Openshaw, K.

1979-01-01

In many areas of Africa, combining tree-growing with animal rearing is advantageous, as the trees provide shade, animal fodder and timber for fuel and building, while grazing animals reduce the fire hazard from ground vegetation and improve soil fertility through droppings. Acacia albida, Prosopis cineraria, P. chilensis, leucaena leucocephala and Ailanthus excelsa are discussed as promising fodder trees, and an appendix is included with notes on 21 other trees for fodder or the production of medicines.

Tree health and physiology in a changing environment

Science.gov (United States)

Walter C. Shortle; Kevin T. Smith; Rakesh Minocha; Subhash Minocha; Philip M. Wargo; Kristina A. Vogt

2000-01-01

A tree is a large, long-lived, perennial, compartmented, woody, shedding, walling plant. This definition is based on new tree biology concepts (Shigo, 1986a,b, 1991) and explains much about how mature trees function through their unique structure. When the tree begins its life, it is mostly leaf in mass (Fig. 7.la). As a tree grows in stature, it becomes mostly stem in...

Age class, longevity and growth rate relationships: protracted growth increases in old trees in the eastern United States.

Science.gov (United States)

Johnson, Sarah E; Abrams, Marc D

2009-11-01

This study uses data from the International Tree-Ring Data Bank website and tree cores collected in the field to explore growth rate (basal area increment, BAI) relationships across age classes (from young to old) for eight tree species in the eastern US. These species represent a variety of ecological traits and include those in the genera Populus, Quercus, Pinus, Tsuga and Nyssa. We found that most trees in all age classes and species exhibit an increasing BAI throughout their lives. This is particularly unusual for trees in the older age classes that we expected to have declining growth in the later years, as predicted by physiological growth models. There exists an inverse relationship between growth rate and increasing age class. The oldest trees within each species have consistently slow growth throughout their lives, implying an inverse relationship between growth rate and longevity. Younger trees (trees when they are of the same age resulting from a higher proportion of fast-growing trees in these young age classes. Slow, but increasing, BAI in the oldest trees in recent decades is a continuation of their growth pattern established in previous centuries. The fact that they have not shown a decreasing growth rate in their old age contradicts physiological growth models and may be related to the stimulatory effects of global change phenomenon (climate and land-use history).

Body weight and reproductive parameters in fast and weak growing Awassi ram lambs during different age stages.

Science.gov (United States)

Zarkawi, Moutaz; Al-Daker, Al-Moutassem Billah

2016-01-01

This study was carried out on 30 Syrian Awassi ram lambs around 3 months of age. Lambs were divided equally in 2 groups as fast growing (FG) and weak growing (WG) lambs to identify body weight and reproductive parameters in each group during different age stages. Blood samples were collected to determine testosterone and leptin concentrations using radioimmunoassay. At puberty, average body weight and age of FG and WG lambs was 52.4 and 43.1 kg, and 225.9 and 248.0 days, respectively, with a significant (P age (below 1.0 nmol L(-1)) and increased with advancing age with a sharp increase occurring at 7 months of age and at puberty, averages were 12.58 and 11.86 nmol L(-1) for FG and WG groups, respectively, with no significant (P > 0.05) differences. At puberty, average leptin concentration was 3.16 and 2.98 ng mL(-1) for FG and WG groups, respectively, with no significant (P > 0.05) difference.

Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets

Science.gov (United States)

Zhou, Xiaofan; Shen, Xing-Xing; Hittinger, Chris Todd

2018-01-01

Abstract The sizes of the data matrices assembled to resolve branches of the tree of life have increased dramatically, motivating the development of programs for fast, yet accurate, inference. For example, several different fast programs have been developed in the very popular maximum likelihood framework, including RAxML/ExaML, PhyML, IQ-TREE, and FastTree. Although these programs are widely used, a systematic evaluation and comparison of their performance using empirical genome-scale data matrices has so far been lacking. To address this question, we evaluated these four programs on 19 empirical phylogenomic data sets with hundreds to thousands of genes and up to 200 taxa with respect to likelihood maximization, tree topology, and computational speed. For single-gene tree inference, we found that the more exhaustive and slower strategies (ten searches per alignment) outperformed faster strategies (one tree search per alignment) using RAxML, PhyML, or IQ-TREE. Interestingly, single-gene trees inferred by the three programs yielded comparable coalescent-based species tree estimations. For concatenation-based species tree inference, IQ-TREE consistently achieved the best-observed likelihoods for all data sets, and RAxML/ExaML was a close second. In contrast, PhyML often failed to complete concatenation-based analyses, whereas FastTree was the fastest but generated lower likelihood values and more dissimilar tree topologies in both types of analyses. Finally, data matrix properties, such as the number of taxa and the strength of phylogenetic signal, sometimes substantially influenced the programs’ relative performance. Our results provide real-world gene and species tree phylogenetic inference benchmarks to inform the design and execution of large-scale phylogenomic data analyses. PMID:29177474

[Responses of sap flow to natural rainfall and continuous drought of tree species growing on bedrock outcrops].

Science.gov (United States)

Zhang, Hui Ling; Ding, Ya Li; Chen, Hong Song; Wang, Ke Lin; Nie, Yun Peng

2018-04-01

This study focused on bedrock outcrops, a very common habitat in karst region of southwest China. To reveal the responses of plant transpiration to natural rainfall and continuous drought, two tree species typical to this habitat, Radermachera sinica and Triadica rotundifolia, were selected as test materials. A rainout shelter was used to simulate continuous drought. The sap flow dynamics were monitored using the method of Granier's thermal dissipation probe (TDP). Our results showed that sap flow density increased to different degrees after rain in different stages of the growing season. Sap flow density of the deciduous species T. rotundifolia was always higher than that of the semi-deciduous species R. sinica. After two months without rainfall input, both species exhibited no obvious decrease in sap flow density, indicating that rainfall was not the dominant source for their water uptake, at least in the short-term. Based on the regression relationships between sap flow density and meteorological factors before and after rainfall, as well as at different stages of continuous drought, we found that the dynamics of meteorological factors contributed little to plant transpiration. The basic transpiration characteristics of both species were not changed in the circumstance of natural rainfall and short-term continuous drought, which would be closely related to the special water storage environments of bedrock outcrops and the reliance on deep water sources by tree species.

Introduction of deciduous fruit tree growing in the tropical highlands ...

African Journals Online (AJOL)

Mo

have ever been conducted to investigate the potential of temperate tree fruits .... year-old apple cultivars at altitudes of 1830 and 2500 m.a.s.l while tables 2 and 3 ..... breaking are established in addition to determining the best fruiting season.

TreePlus: interactive exploration of networks with enhanced tree layouts.

Science.gov (United States)

Lee, Bongshin; Parr, Cynthia S; Plaisant, Catherine; Bederson, Benjamin B; Veksler, Vladislav D; Gray, Wayne D; Kotfila, Christopher

2006-01-01

Despite extensive research, it is still difficult to produce effective interactive layouts for large graphs. Dense layout and occlusion make food webs, ontologies, and social networks difficult to understand and interact with. We propose a new interactive Visual Analytics component called TreePlus that is based on a tree-style layout. TreePlus reveals the missing graph structure with visualization and interaction while maintaining good readability. To support exploration of the local structure of the graph and gathering of information from the extensive reading of labels, we use a guiding metaphor of "Plant a seed and watch it grow." It allows users to start with a node and expand the graph as needed, which complements the classic overview techniques that can be effective at (but often limited to) revealing clusters. We describe our design goals, describe the interface, and report on a controlled user study with 28 participants comparing TreePlus with a traditional graph interface for six tasks. In general, the advantage of TreePlus over the traditional interface increased as the density of the displayed data increased. Participants also reported higher levels of confidence in their answers with TreePlus and most of them preferred TreePlus.

Fast demographic traits promote high diversification rates of Amazonian trees

NARCIS (Netherlands)

Baker, T.R.; Pennington, R.T.; Magallon, S.; Gloor, E.; Laurance, W.F.; Alexiades, M.; Alvarez, E.; Araujo, de A.; Arets, E.J.M.M.

2014-01-01

The Amazon rain forest sustains the world's highest tree diversity, but it remains unclear why some clades of trees are hyperdiverse, whereas others are not. Using dated phylogenies, estimates of current species richness and trait and demographic data from a large network of forest plots, we show

Three more Mangrove trees growing locally in nature in freshwater

NARCIS (Netherlands)

Steenis, van C.G.G.J.

1984-01-01

In Christmas Island (Indian Ocean) the mangrove trees Bruguiera gymnorrhiza (L.) Sav., B. sexangula (Lour.) Poir. (Rhizophoraceae) and Heritiera littoralis Ait. (Sterculiaceae) are found inland near freshwater springs at some 20-30 m altitude, far from the beach. It is concluded that the inland

Tree planting in Haiti: How to plant and care for your nursery grown seedlings

Science.gov (United States)

Kyrstan Hubbel; Yvonne Barkley; Jeremiah R. Pinto; R. Kasten Dumroese; Sabine Deristin; Raymond Joseph; Randy Brooks; Anthony S. Davis

2016-01-01

Seedlings need the right amounts of sunlight, water and nutrients to live and grow into healthy trees. Different types of trees have different requirements, so seedlings will need planting sites that meet all of their requirements. For example, pine trees need full sun, a moderate amount of water and a certain combination of nutrients to grow into healthy trees. If you...

The trouble with travel and trees

Energy Technology Data Exchange (ETDEWEB)

Reid, Hannah; Roe, Dilys

2007-10-15

The aviation industry is a small – although fast-growing – contributor to greenhouse gas emissions, but per kilometre its impact outstrips that of any other form of transport. As today's technology looks unlikely to reduce that impact significantly over the next 25 years, aviation has become a key issue in the climate change debate. Many air travellers and people working in the travel industry see carbon offsetting as a viable green solution to the problem. But how accurate is that view? It is becoming clear that offsetting schemes based on tree planting or forest conservation may trigger a cascade of other problems. Entire communities may be evicted from land allocated for tree planting, or denied access to forest resources designated as protected carbon stores. Forest-based offsetting schemes are also subject to considerable uncertainty: forests can be chopped down or burnt, for instance, which releases stored carbon back into the atmosphere. Some schemes also fail to prevent 'leakage', in which planting trees or conserving forests in one place just shifts deforestation to another, adding nothing to overall carbon stores. For real progress to be made on carbon sequestration and reducing greenhouse gas emissions, we need to go beyond tree-planting and offsetting. Too often they are an excuse for 'business as usual'. The focus must first be on a sustained reduction in emissions. Secondly, it needs to be recognised that the people bearing the heaviest costs of climate change contribute little to the problem, and that new mechanisms for compensating them and helping them adapt to changing conditions are needed. Finally, where offsetting is appropriate, schemes must take full account of the needs and rights of local people who live with the consequences of our new climate consciousness.

Fragmentation of random trees

International Nuclear Information System (INIS)

Kalay, Z; Ben-Naim, E

2015-01-01

We study fragmentation of a random recursive tree into a forest by repeated removal of nodes. The initial tree consists of N nodes and it is generated by sequential addition of nodes with each new node attaching to a randomly-selected existing node. As nodes are removed from the tree, one at a time, the tree dissolves into an ensemble of separate trees, namely, a forest. We study statistical properties of trees and nodes in this heterogeneous forest, and find that the fraction of remaining nodes m characterizes the system in the limit N→∞. We obtain analytically the size density ϕ s of trees of size s. The size density has power-law tail ϕ s ∼s −α with exponent α=1+(1/m). Therefore, the tail becomes steeper as further nodes are removed, and the fragmentation process is unusual in that exponent α increases continuously with time. We also extend our analysis to the case where nodes are added as well as removed, and obtain the asymptotic size density for growing trees. (paper)

Characteristics of Decomposition Powers of L-Band Multi-Polarimetric SAR in Assessing Tree Growth of Industrial Plantation Forests in the Tropics

Directory of Open Access Journals (Sweden)

Yoshio Yamaguchi

2012-10-01

Full Text Available A decomposition scheme was applied to ALOS/PALSAR data obtained from a fast-growing tree plantation in Sumatra, Indonesia to extract tree stem information and then estimate the forest stand volume. The scattering power decomposition of the polarimetric SAR data was performed both with and without a rotation matrix and compared to the following field-measured forest biometric parameters: tree diameter, tree height and stand volume. The analytical results involving the rotation matrix correlated better than those without the rotation matrix even for natural scattering surfaces within the forests. Our primary finding was that all of the decomposition powers from the rotated matrix correlated significantly to the forest biometric parameters when divided by the total power. The surface scattering ratio of the total power markedly decreased with the forest growth, whereas the canopy and double-bounce scattering ratios increased. The observations of the decomposition powers were consistent with the tree growth characteristics. Consequently, we found a significant logarithmic relationship between the decomposition powers and the forest biometric parameters that can potentially be used to estimate the forest stand volume.

Evaluation of fasting metabolism of growing water buffalo (Bubalus, Bubalis).

Science.gov (United States)

Qin, Guangsheng; Zou, Caixia; Pang, Chunying; Yang, Bingzhuan; Liang, Xianwei; Liu, Jianxin; Xia, Zhongsheng; Wen, Qiuyan; Yan, Tianhai

2011-12-01

The objectives of the present study were to evaluate fasting metabolism (FM) of water buffalo (Bubalus, Bubalis) at three stages of growth (12, 18 and 24 months) in Guangxi, China. Five female water buffalo were used for each age group and their live weight was on average 254, 326 and 338 kg, respectively. All animals were of average body condition, healthy and de-wormed before start of the study. Prior to a 6-day fasting period, buffalo were offered a mixed diet of forage and concentrates (70% and 30%, dry matter basis) on a restricted nutritional level (419 kJ/kg(0.75) of metabolizable energy, ME) for 15 days. Gas exchanges for each animal were determined for 3 days from day 4 of starvation, using open-circuit respiratory head hoods. Fasting body weight was 0.918 of live weight (P fasting heat production (FHP) and FM (MJ/day) increased significantly with increased age of animals (P fasting body weight (kg(0.75)) and FHP (MJ/day, P fasting body weight, the differences in FHP or FM between three groups of animals were not significant. The present average FHP and FM (322 and 347 kJ/kg(0.75) of fasting body weight) were compatible to those published in the literature for water buffalo, beef and dairy cattle. The present FM data were also used to estimate net energy (NE(m)) and ME (ME(m)) requirements for maintenance for water buffalo. The results for these two parameters were similar to those for FHP and FM. There was no significant difference between three groups of buffalo in NE(m) or ME(m) when expressed as kJ/kg(0.75) of live weight. The present average NE(m) and ME(m) values (347 and 506 kJ/kg(0.75) of live weight) are close to those proposed by the Agricultural and Food Research Council adopted in UK for beef and dairy cattle. The results indicate that the present FM data can be used as a basis for rationing water buffalo in China. © 2011 The Authors. Animal Science Journal © 2011 Japanese Society of Animal Science.

Observation of eight ancient olive trees (Olea europaea L.) growing in the Garden of Gethsemane.

Science.gov (United States)

Petruccelli, Raffaella; Giordano, Cristiana; Salvatici, Maria Cristina; Capozzoli, Laura; Ciaccheri, Leonardo; Pazzini, Massimo; Lain, Orietta; Testolin, Raffaele; Cimato, Antonio

2014-05-01

For thousands of years, olive trees (Olea europaea L.) have been a significant presence and a symbol in the Garden of Gethsemane, a place located at the foot of the Mount of Olives, Jerusalem, remembered for the agony of Jesus Christ before his arrest. This investigation comprises the first morphological and genetic characterization of eight olive trees in the Garden of Gethsemane. Pomological traits, morphometric, and ultrastructural observations as well as SSR (Simple Sequence Repeat) analysis were performed to identify the olive trees. Statistical analyses were conducted to evaluate their morphological variability. The study revealed a low morphological variability and minimal dissimilarity among the olive trees. According to molecular analysis, these trees showed the same allelic profile at all microsatellite loci analyzed. Combining the results of the different analyses carried out in the frame of the present work, we could conclude that the eight olive trees of the Gethsemane Garden have been propagated from a single genotype. Copyright © 2014. Published by Elsevier SAS.

Stratified B-trees and versioning dictionaries

OpenAIRE

Twigg, Andy; Byde, Andrew; Milos, Grzegorz; Moreton, Tim; Wilkes, John; Wilkie, Tom

2011-01-01

A classic versioned data structure in storage and computer science is the copy-on-write (CoW) B-tree -- it underlies many of today's file systems and databases, including WAFL, ZFS, Btrfs and more. Unfortunately, it doesn't inherit the B-tree's optimality properties; it has poor space utilization, cannot offer fast updates, and relies on random IO to scale. Yet, nothing better has been developed since. We describe the `stratified B-tree', which beats all known semi-external memory versioned B...

Unthinned slow-growing ponderosa pine (Pinus ponderosa) trees contain muted isotopic signals in tree rings as compared to thinned trees

Science.gov (United States)

We analysed the oxygen isotopic values of wood (δ18Ow) of 12 ponderosa pine (Pinus ponderosa) trees from control, moderately, and heavily thinned stands and compared them with existing wood-based estimates of carbon isotope discrimination (∆13C), basal area increment (BAI), and g...

A New Algorithm Using the Non-Dominated Tree to Improve Non-Dominated Sorting.

Science.gov (United States)

Gustavsson, Patrik; Syberfeldt, Anna

2018-01-01

Non-dominated sorting is a technique often used in evolutionary algorithms to determine the quality of solutions in a population. The most common algorithm is the Fast Non-dominated Sort (FNS). This algorithm, however, has the drawback that its performance deteriorates when the population size grows. The same drawback applies also to other non-dominating sorting algorithms such as the Efficient Non-dominated Sort with Binary Strategy (ENS-BS). An algorithm suggested to overcome this drawback is the Divide-and-Conquer Non-dominated Sort (DCNS) which works well on a limited number of objectives but deteriorates when the number of objectives grows. This article presents a new, more efficient algorithm called the Efficient Non-dominated Sort with Non-Dominated Tree (ENS-NDT). ENS-NDT is an extension of the ENS-BS algorithm and uses a novel Non-Dominated Tree (NDTree) to speed up the non-dominated sorting. ENS-NDT is able to handle large population sizes and a large number of objectives more efficiently than existing algorithms for non-dominated sorting. In the article, it is shown that with ENS-NDT the runtime of multi-objective optimization algorithms such as the Non-Dominated Sorting Genetic Algorithm II (NSGA-II) can be substantially reduced.

Wood nitrogen concentrations in tropical trees: phylogenetic patterns and ecological correlates.

Science.gov (United States)

Martin, Adam R; Erickson, David L; Kress, W John; Thomas, Sean C

2014-11-01

In tropical and temperate trees, wood chemical traits are hypothesized to covary with species' life-history strategy along a 'wood economics spectrum' (WES), but evidence supporting these expected patterns remains scarce. Due to its role in nutrient storage, we hypothesize that wood nitrogen (N) concentration will covary along the WES, being higher in slow-growing species with high wood density (WD), and lower in fast-growing species with low WD. In order to test this hypothesis we quantified wood N concentrations in 59 Panamanian hardwood species, and used this dataset to examine ecological correlates and phylogenetic patterns of wood N. Wood N varied > 14-fold among species between 0.04 and 0.59%; closely related species were more similar in wood N than expected by chance. Wood N was positively correlated with WD, and negatively correlated with log-transformed relative growth rates, although these relationships were relatively weak. We found evidence for co-evolution between wood N and both WD and log-transformed mortality rates. Our study provides evidence that wood N covaries with tree life-history parameters, and that these patterns consistently co-evolve in tropical hardwoods. These results provide some support for the hypothesized WES, and suggest that wood is an increasingly important N pool through tropical forest succession. © 2014 The Authors. New Phytologist © 2014 New Phytologist Trust.

Better trees through systematic breeding

Science.gov (United States)

Robert Z. Callaham

1957-01-01

Today I would like to tell you briefly about the efforts of forest geneticists to improve the quality of forest trees. What do we mean by quality? Here, the consumer has the first word. The trees we produce are primarily for timber production, and the timber growing and wood-using industries give us our guidelines. Nevertheless, many of the characteristics sought by...

MixtureTree annotator: a program for automatic colorization and visual annotation of MixtureTree.

Directory of Open Access Journals (Sweden)

Shu-Chuan Chen

Full Text Available The MixtureTree Annotator, written in JAVA, allows the user to automatically color any phylogenetic tree in Newick format generated from any phylogeny reconstruction program and output the Nexus file. By providing the ability to automatically color the tree by sequence name, the MixtureTree Annotator provides a unique advantage over any other programs which perform a similar function. In addition, the MixtureTree Annotator is the only package that can efficiently annotate the output produced by MixtureTree with mutation information and coalescent time information. In order to visualize the resulting output file, a modified version of FigTree is used. Certain popular methods, which lack good built-in visualization tools, for example, MEGA, Mesquite, PHY-FI, TreeView, treeGraph and Geneious, may give results with human errors due to either manually adding colors to each node or with other limitations, for example only using color based on a number, such as branch length, or by taxonomy. In addition to allowing the user to automatically color any given Newick tree by sequence name, the MixtureTree Annotator is the only method that allows the user to automatically annotate the resulting tree created by the MixtureTree program. The MixtureTree Annotator is fast and easy-to-use, while still allowing the user full control over the coloring and annotating process.

Sequence embedding for fast construction of guide trees for multiple sequence alignment

LENUS (Irish Health Repository)

Blackshields, Gordon

2010-05-14

Abstract Background The most widely used multiple sequence alignment methods require sequences to be clustered as an initial step. Most sequence clustering methods require a full distance matrix to be computed between all pairs of sequences. This requires memory and time proportional to N 2 for N sequences. When N grows larger than 10,000 or so, this becomes increasingly prohibitive and can form a significant barrier to carrying out very large multiple alignments. Results In this paper, we have tested variations on a class of embedding methods that have been designed for clustering large numbers of complex objects where the individual distance calculations are expensive. These methods involve embedding the sequences in a space where the similarities within a set of sequences can be closely approximated without having to compute all pair-wise distances. Conclusions We show how this approach greatly reduces computation time and memory requirements for clustering large numbers of sequences and demonstrate the quality of the clusterings by benchmarking them as guide trees for multiple alignment. Source code is available for download from http:\\/\\/www.clustal.org\\/mbed.tgz.

Water relations and photosynthetic performance in Larix sibirica growing in the forest-steppe ecotone of northern Mongolia.

Science.gov (United States)

Dulamsuren, Choimaa; Hauck, Markus; Bader, Martin; Osokhjargal, Dalaikhuu; Oyungerel, Shagjjav; Nyambayar, Suran; Runge, Michael; Leuschner, Christoph

2009-01-01

Shoot water relations were studied in Siberian larch (Larix sibirica Ledeb.) trees growing at the borderline between taiga and steppe in northern Mongolia. Larix sibirica is the main tree species in these forests covering 80% of Mongolia's forested area. Minimum shoot water potentials (Psi(m)) close to the point of zero turgor (Psi(0)) repeatedly recorded throughout the growing season suggest that the water relations in L. sibirica were often critical. The Psi(m) varied in close relation to the atmospheric vapor pressure deficit, whereas Psi(0) was correlated with monthly precipitation. Young larch trees growing at the forest line to the steppe were more susceptible to drought than mature trees at the same sites. Furthermore, isolated trees growing on the steppe exhibited lower Psi(m) and recovered to a lower degree from drought overnight than the trees at the forest line. Indications of drought stress in L. sibirica were obtained in two study areas in Mongolia's forest-steppe ecotone: one in the mountain taiga of the western Khentey in northernmost Mongolia, the other in the forest-steppe at the southern distribution limit of L. sibirica on Mt. Bogd Uul, southern Khentey. Larix sibirica growing in riverine taiga with contact to the groundwater table was better water-supplied than the larch trees growing at the forest line to the steppe. Larch trees from the interior of light taiga forests on north-facing slopes, however, exhibited more critical water relations than the trees at the forest line. Frequent drought stress in mature trees and even more in young larch trees at the forest-steppe borderline suggests that L. sibirica does not have the potential to encroach on the steppe under the present climate, except in a sequence of exceptionally moist and cool years. A regression of the present borderline between forest and steppe is likely to occur, as average temperatures are increasing everywhere and precipitation is decreasing regionally in Mongolia's taiga forest

Radiation mutagenesis in selection of apple trees

International Nuclear Information System (INIS)

Kolontaev, V.M.; Kolontaev, Yu.V.

1977-01-01

After X-radiation of grafts of antonovka apple trees, three groups of morphological mutants, namely, weak-, average- and violently-growing, have been revealed. Although the mutation spectrum has some indefinite character a dose of 6 kR causes, more frequently and in a greater number, the weak-growing mutants, and a dose of 2 kR, the violently-growing ones. Mutants of each group differ in the precociousness (precocious and latefruiting), type of fruiting (nospur and spur) and yield (high- and low-yielding). Using the method of radiation mutagenesis it is possible to rise the frequency and spectrum of somatic mutability of antonovka apple trees and to induce forms having valuable features

Management of Animal Carcass Disposal Sites Using a Biochar Permeable Reactive Barrier and Fast Growth Tree (Populus euramericana: A Field Study in Korea

Directory of Open Access Journals (Sweden)

Jung-Hwan Yoon

2017-03-01

Full Text Available Among many disposal options of animal carcasses due to animal diseases including foot-and-mouth disease (FMD and avian influenza (AI, on-farm burial has been the most frequently used one in Korea. Animal carcasses generate contaminants such as ammonium-N and chloride. This study aimed at testing biochar (BC as a permeable reactive barrier (PRB material in combination with fast growing tree species (Populus euramericana to mitigate groundwater pollution from animal burial sites. For this, a PRB filled with BC was installed and 400 poplar tree (P. euramericana seedlings were planted. Tested BC was obtained from rice husk and its efficiency to mitigate contaminant migration from a burial site of pig carcasses was tested using ammonium-N, chloride, electrical conductivity (EC, and pH as monitoring parameters. Monitoring wells downstream from the burial site were used. Leachates from a monitoring well, three wells inside the burial site close to PRB and three wells outside the burial site close to PRB were sampled and analyzed for ammonium-N, Cl−, EC, and pH for four years from PRB installation. The pH, EC, and ammonium-N of leachate fluctuated during the test period depending on precipitation. pH, EC, and ammonium-N of the leachate samples collected from outside of the burial site close to PRB decreased compared to those from inside of the burial site close to PRB. The concentrations of ammonium-N in the leachate from the monitoring well kept under the threshold value of 10 mg·L−1 for two years from PRB construction. In addition, the growth of poplar plants appeared to be increased via uptaking available N and P released from the burial sites. Achieved results suggest that BC PRBs can be used to in situ mitigate contaminant release from buried animal carcasses.

FastBit Reference Manual

Energy Technology Data Exchange (ETDEWEB)

Wu, Kesheng

2007-08-02

An index in a database system is a data structure that utilizes redundant information about the base data to speed up common searching and retrieval operations. Most commonly used indexes are variants of B-trees, such as B+-tree and B*-tree. FastBit implements a set of alternative indexes call compressed bitmap indexes. Compared with B-tree variants, these indexes provide very efficient searching and retrieval operations by sacrificing the efficiency of updating the indexes after the modification of an individual record. In addition to the well-known strengths of bitmap indexes, FastBit has a special strength stemming from the bitmap compression scheme used. The compression method is called the Word-Aligned Hybrid (WAH) code. It reduces the bitmap indexes to reasonable sizes and at the same time allows very efficient bitwise logical operations directly on the compressed bitmaps. Compared with the well-known compression methods such as LZ77 and Byte-aligned Bitmap code (BBC), WAH sacrifices some space efficiency for a significant improvement in operational efficiency. Since the bitwise logical operations are the most important operations needed to answer queries, using WAH compression has been shown to answer queries significantly faster than using other compression schemes. Theoretical analyses showed that WAH compressed bitmap indexes are optimal for one-dimensional range queries. Only the most efficient indexing schemes such as B+-tree and B*-tree have this optimality property. However, bitmap indexes are superior because they can efficiently answer multi-dimensional range queries by combining the answers to one-dimensional queries.

Linking and Cutting Spanning Trees

Directory of Open Access Journals (Sweden)

Luís M. S. Russo

2018-04-01

Full Text Available We consider the problem of uniformly generating a spanning tree for an undirected connected graph. This process is useful for computing statistics, namely for phylogenetic trees. We describe a Markov chain for producing these trees. For cycle graphs, we prove that this approach significantly outperforms existing algorithms. For general graphs, experimental results show that the chain converges quickly. This yields an efficient algorithm due to the use of proper fast data structures. To obtain the mixing time of the chain we describe a coupling, which we analyze for cycle graphs and simulate for other graphs.

Motivation and ability to walk for a food reward in fast- and slow-growing broilers to 12 weeks of age.

Science.gov (United States)

Bokkers, Eddie A M; Koene, Paul

2004-09-30

Poor physical abilities of broilers may prevent them from performing behaviours for which they are motivated. The aim of this study was to measure the influence of physical ability and motivation on the performance of broilers in short physical tasks. We tested birds from a fast- and a slow-growing broiler strain in a runway to 12 weeks of age. To manipulate motivation, half of the birds of each strain was feed deprived for 3h and the other half for 24h before testing. Each bird was tested in a control and a slalom runway test once a week. With a similar motivation, slow growers had a shorter latency to start walking and walked faster through the runway than fast growers in both tests. In fast growers walking speed decreased faster with age than in slow growers. Slow growers vocalised more in both tests. In the slalom test, 24h deprived birds vocalised more than 3h deprived birds. Although the fast and slow growers have a different genetic background, the results indicated that motivation is the dominant determinative factor for walking in birds with a low body weight, while physical ability is the dominant determinative factor for walking in birds with a high body weight.

A new fast algorithm for solving the minimum spanning tree problem based on DNA molecules computation.

Science.gov (United States)

Wang, Zhaocai; Huang, Dongmei; Meng, Huajun; Tang, Chengpei

2013-10-01

The minimum spanning tree (MST) problem is to find minimum edge connected subsets containing all the vertex of a given undirected graph. It is a vitally important NP-complete problem in graph theory and applied mathematics, having numerous real life applications. Moreover in previous studies, DNA molecular operations usually were used to solve NP-complete head-to-tail path search problems, rarely for NP-hard problems with multi-lateral path solutions result, such as the minimum spanning tree problem. In this paper, we present a new fast DNA algorithm for solving the MST problem using DNA molecular operations. For an undirected graph with n vertex and m edges, we reasonably design flexible length DNA strands representing the vertex and edges, take appropriate steps and get the solutions of the MST problem in proper length range and O(3m+n) time complexity. We extend the application of DNA molecular operations and simultaneity simplify the complexity of the computation. Results of computer simulative experiments show that the proposed method updates some of the best known values with very short time and that the proposed method provides a better performance with solution accuracy over existing algorithms. Copyright © 2013 The Authors. Published by Elsevier Ireland Ltd.. All rights reserved.

Trees for future forests

DEFF Research Database (Denmark)

Lobo, Albin

Climate change creates new challenges in forest management. The increase in temperature may in the long run be beneficial for the forests in the northern latitudes, but the high rate at which climate change is predicted to proceed will make adaptation difficult because trees are long living sessile...... organisms. The aim of the present thesis is therefore to explore genetic resilience and phenotypic plasticity mechanisms that allows trees to adapt and evolve with changing climates. The thesis focus on the abiotic factors associated with climate change, especially raised temperatures and lack...... age of these tree species and the uncertainty around the pace and effect of climate, it remains an open question if the native populations can respond fast enough. Phenotypic plasticity through epigenetic regulation of spring phenology is found to be present in a tree species which might act...

Flowering Trees

Indian Academy of Sciences (India)

Canthium parviflorum Lam. of Rubiaceae is a large shrub that often grows into a small tree with conspicuous spines. Leaves are simple, in pairs at each node and are shiny. Inflorescence is an axillary few-flowered cymose fascicle. Flowers are small (less than 1 cm across), 4-merous and greenish-white. Fruit is ellipsoid ...

Flowering Trees

Indian Academy of Sciences (India)

mid-sized slow-growing evergreen tree with spreading branches that form a dense crown. The bark is smooth, thick, dark and flakes off in large shreds. Leaves are thick, oblong, leathery and bright red when young. The female flowers are drooping and are larger than male flowers. Fruit is large, red in color and velvety.

Tree diversity and canopy cover in cocoa systems in Ghana

DEFF Research Database (Denmark)

Asare, Richard; Ræbild, Anders

2016-01-01

Cocoa (Theobroma cacao L.) growing systems in Ghana and West Africa consist of diverse tree species and densities.This study was conducted to determine factors that influence tree species configurations and how tree characteristics affect canopy cover in cocoa farms. Eighty-six farmers...

Determining the effects of early gestation in utero heat stress on postnatal fasting heat production and circulating biomarkers associated with metabolism in growing pigs

Science.gov (United States)

The study objective was to determine the effects of in utero heat stress (IUHS) on postnatal fasting heat production (FHP) in growing pigs. Based on our previous observation of increased postnatal core body temperature ‘set-point’ in IUHS pigs, we hypothesized that FHP would be greater during postna...

IND - THE IND DECISION TREE PACKAGE

Science.gov (United States)

Buntine, W.

1994-01-01

A common approach to supervised classification and prediction in artificial intelligence and statistical pattern recognition is the use of decision trees. A tree is "grown" from data using a recursive partitioning algorithm to create a tree which has good prediction of classes on new data. Standard algorithms are CART (by Breiman Friedman, Olshen and Stone) and ID3 and its successor C4 (by Quinlan). As well as reimplementing parts of these algorithms and offering experimental control suites, IND also introduces Bayesian and MML methods and more sophisticated search in growing trees. These produce more accurate class probability estimates that are important in applications like diagnosis. IND is applicable to most data sets consisting of independent instances, each described by a fixed length vector of attribute values. An attribute value may be a number, one of a set of attribute specific symbols, or it may be omitted. One of the attributes is delegated the "target" and IND grows trees to predict the target. Prediction can then be done on new data or the decision tree printed out for inspection. IND provides a range of features and styles with convenience for the casual user as well as fine-tuning for the advanced user or those interested in research. IND can be operated in a CART-like mode (but without regression trees, surrogate splits or multivariate splits), and in a mode like the early version of C4. Advanced features allow more extensive search, interactive control and display of tree growing, and Bayesian and MML algorithms for tree pruning and smoothing. These often produce more accurate class probability estimates at the leaves. IND also comes with a comprehensive experimental control suite. IND consists of four basic kinds of routines: data manipulation routines, tree generation routines, tree testing routines, and tree display routines. The data manipulation routines are used to partition a single large data set into smaller training and test sets. The

Estimation of the yield of poplars in plantations of fast-growing species within current results

Directory of Open Access Journals (Sweden)

Martin Fajman

2009-01-01

Full Text Available Current results are presented of allometric yield estimates of the poplar short rotation coppice. According to a literature review it is obvious that yield estimates, based on measurable quantities of a growing stand, depend not only on the selected tree specie or its clone, but also on the site location. The Jap-105 poplar clone (P. nigra x P. maximowiczii allometric relations were analyzed by regression methods aimed at the creation of the yield estimation methodology at a testing site in Domanínek. Altogether, the twelve polynomial dependences of particular measured quantities approved the high empirical data conformity with the tested regression model (correlation index from 0.9033 to 0.9967. Within the forward stepwise regression, factors were selected, which explain best examined estimates of the total biomass DM; i.e. d.b.h. and stem height. Furthermore, the KESTEMONT’s (1971 mo­del was verified with a satisfying conformity as well. Approving presented yield estimation methods, the presented models will be checked in a large-scale field trial.

IP lookup with low memory requirement and fast update

DEFF Research Database (Denmark)

Berger, Michael Stübert

2003-01-01

The paper presents an IP address lookup algorithm with low memory requirement and fast updates. The scheme, which is denoted prefix-tree, uses a combination of a trie and a tree search, which is efficient in memory usage because the tree contains exactly one node for each prefix in the routing...

Beyond Tree Throw: Wind, Water, Rock and the Mechanics of Tree-Driven Bedrock Physical Weathering

Science.gov (United States)

Marshall, J. A.; Anderson, R. S.; Dawson, T. E.; Dietrich, W. E.; Minear, J. T.

2017-12-01

Tree throw is often invoked as the dominant process in converting bedrock to soil and thus helping to build the Critical Zone (CZ). In addition, observations of tree roots lifting sidewalk slabs, occupying cracks, and prying slabs of rock from cliff faces have led to a general belief in the power of plant growth forces. These common observations have led to conceptual models with trees at the center of the soil genesis process. This is despite the observation that tree throw is rare in many forested settings, and a dearth of field measurements that quantify the magnitude of growth forces. While few trees blow down, every tree grows roots, inserting many tens of percent of its mass below ground. Yet we lack data quantifying the role of trees in both damaging bedrock and detaching it (and thus producing soil). By combing force measurements at the tree-bedrock interface with precipitation, solar radiation, wind speed, and wind-driven tree sway data we quantified the magnitude and frequency of tree-driven soil-production mechanisms from two contrasting climatic and lithologic regimes (Boulder and Eel Creek CZ Observatories). Preliminary data suggests that in settings with relatively thin soils, trees can damage and detach rock due to diurnal fluctuations, wind response and rainfall events. Surprisingly, our data suggests that forces from roots and trunks growing against bedrock are insufficient to pry rock apart or damage bedrock although much more work is needed in this area. The frequency, magnitude and style of wind-driven tree forces at the bedrock interface varies considerably from one to another species. This suggests that tree properties such as mass, elasticity, stiffness and branch structure determine whether trees respond to gusts big or small, move at the same frequency as large wind gusts, or are able to self-dampen near-ground sway response to extended wind forces. Our measurements of precipitation-driven and daily fluctuations in root pressures exerted on

Improving the water use efficiency of olive trees growing in water harvesting systems

Science.gov (United States)

Berliner, Pedro; Leake, Salomon; Carmi, Gennady; Agam, Nurit

2017-04-01

Water is a primary limiting factor for agricultural development in many arid and semi-arid regions in which a runoff generation is a rather frequent event. If conveyed to dyke surrounded plots and ponded, runoff water can thereafter be used for tree production. One of the most promising runoff collection configurations is that of micro-catchments in which water is collected close to the area in which runoff was generated and stored in adjacent shallow pits. The objective of this work was to assess the effect of the geometry of runoff water collection area (shallow pit or trench) on direct evaporative water losses and on the water use efficiency of olive trees grown in them. The study was conducted during the summer of 2013 and 2014. In this study regular micro-catchments with basins of 9 m2 (3 x 3 m) by 0.1 m deep were compared with trenches of one meter deep and one meter wide. Each configuration was replicated three times. One tree was planted in each shallow basin and the distance between trees in the 12 m long trench was four meters. Access tubes for neutron probes were installed in the micro-catchments and trenches (four and seven, respectively) to depths of 2.5 m. Soil water content in the soil profile was monitored periodically throughout drying periods in between simulated runoff events. Transpiration of the trees was estimated from half-hourly sap flow measurements using a Granier system. Total transpiration fluxes were computed for time intervals corresponding to consecutive soil water measurements. During the first year, a large runoff event was simulated by applying once four cubic meters to each plot; and in the second year the same volume of water was split into four applications, simulating a series of small runoff events. In both geometries, trees received the same amount of water per tree. Evaporation from trenches and micro-catchments was estimated as the difference between evapotranspiration obtained computing the differences in total soil water

Phytoextraction of potentially toxic elements by six tree species growing on hazardous mining sludge.

Science.gov (United States)

Mleczek, Mirosław; Goliński, Piotr; Krzesłowska, Magdalena; Gąsecka, Monika; Magdziak, Zuzanna; Rutkowski, Paweł; Budzyńska, Sylwia; Waliszewska, Bogusława; Kozubik, Tomisław; Karolewski, Zbigniew; Niedzielski, Przemysław

2017-10-01

The aim of the study was to compare the phytoextraction abilities of six tree species (Acer platanoides L., Acer pseudoplatanus L., Betula pendula Roth, Quercus robur L., Tilia cordata Miller, Ulmus laevis Pall.), cultivated on mining sludge contaminated with arsenic (As), cadmium (Cd), copper (Cu), lead (Pb), thallium (Tl), and zinc (Zn). All six tree species were able to survive on such an unpromising substrate. However, A. platanoides and T. cordata seedlings grown on the polluted substrate showed significantly lower biomass than control plants (55.5 and 45.6%, respectively). As, Cd, Cu, Pb, and Tl predominantly accumulated in the roots of all the analyzed tree species with the following highest contents: 1616, 268, 2432, 547, and 856 mg kg -1 , respectively. Zn was predominantly localized in shoots with the highest content of 5801 and 5732 mg kg -1 for U. laevis and A. platanoides, respectively. A. platanoides was the most effective in Zn phytoextaction, with a bioconcentration factor (BCF) of 8.99 and a translocation factor (TF) of 1.5. Furthermore, with the exception of A. pseudoplatanus, the analyzed tree species showed a BCF > 1 for Tl, with the highest value for A. platanoides (1.41). However, the TF for this metal was lower than 1 in all the analyzed tree species. A. platanoides showed the highest BCF and a low TF and could, therefore, be a promising species for Tl phytostabilization. In the case of the other analyzed tree species, their potential for effective phytoextraction was markedly lower. Further studies on the use of A. platanoides in phytoremediation would be worth conducting.

Soil hydrology of agroforestry systems: Competition for water or positive tree-crops interactions?

Science.gov (United States)

Gerjets, Rowena; Richter, Falk; Jansen, Martin; Carminati, Andrea

2017-04-01

In dry periods during the growing season crops may suffer from severe water stress. The question arises whether the alternation of crop and tree strips might enhance and sustain soil water resources available for crops during drought events. Trees reduce wind exposure, decreasing the potential evapotranspiration of crops and soils; additionally hydraulic lift from the deep roots of trees to the drier top soil might provide additional water for shallow-rooted crops. To understand the above and belowground water relations of agroforestry systems, we measured soil moisture and soil water potential in crop strips as a function of distance to the trees at varying depth as well as meteorological parameters. At the agroforestry site Reiffenhausen, Lower Saxony, Germany, two different tree species are planted, each in one separated tree strip: willow breed Tordis ((Salix viminalis x Salix Schwerinii) x Salix viminalis) and poplar clone Max 1 (Populus nigra x Populus maximowiczii). In between the tree strips a crop strip of 24 m width was established with annual crop rotation, managed the same way as the reference site. During a drought period in May 2016 with less than 2 mm rain in four weeks, an overall positive effect on hydrological conditions of the agroforestry system was observed. The results show that trees shaded the soil surface, lowering the air temperature and further increasing the soil moisture in the crop strips compared to the reference site, which was located far from the trees. At the reference site the crops took up water in the upper soil (sunlight. The two tree species behaved differently. The poplar strips showed more marked diurnal changes in soil water potential, with fast drying during daytime and rewetting during nighttime. We suppose that the rewetting during nighttime was caused by hydraulic lift, which supports passively the drier upper soil with water from the wetter, lower soil layers. This experimental study shows the importance of above- and

Fast Construction of Near Parsimonious Hybridization Networks for Multiple Phylogenetic Trees.

Science.gov (United States)

Mirzaei, Sajad; Wu, Yufeng

2016-01-01

Hybridization networks represent plausible evolutionary histories of species that are affected by reticulate evolutionary processes. An established computational problem on hybridization networks is constructing the most parsimonious hybridization network such that each of the given phylogenetic trees (called gene trees) is "displayed" in the network. There have been several previous approaches, including an exact method and several heuristics, for this NP-hard problem. However, the exact method is only applicable to a limited range of data, and heuristic methods can be less accurate and also slow sometimes. In this paper, we develop a new algorithm for constructing near parsimonious networks for multiple binary gene trees. This method is more efficient for large numbers of gene trees than previous heuristics. This new method also produces more parsimonious results on many simulated datasets as well as a real biological dataset than a previous method. We also show that our method produces topologically more accurate networks for many datasets.

Lichens of fruit trees in the selected locations in Podlaskie Voivodeship [North-Eastern Poland

Directory of Open Access Journals (Sweden)

Matwiejuk Anna

2017-12-01

Full Text Available The aim of this paper is to present the diversity of the lichen species on fruit trees (Malus sp., Pyrus sp., Prunus sp. and Cerasus sp. growing in orchards in selected villages and towns in the Podlaskie Voivodeship. Fifty-six species of lichens were found. These were dominated by common lichens found on the bark of trees growing in built-up areas with prevailing heliophilous and nitrophilous species of the genera Physcia and Phaeophyscia. A richer lichen biota is characteristic of apple trees (52 species and pear trees (36. Lichens of the apple trees constitute 78% of the biota of this phorophyte growing in the fruit orchards in Poland. Of the recorded species, only two (Ramalina farinacea, Usnea hirta are covered by partial protection in Poland.

Distribution of radiocesium and stable elements within a pine tree

International Nuclear Information System (INIS)

Yoshida, S.; Watanabe, M.; Suzuki, A.

2011-01-01

Distributions of 137 Cs and stable elements in different parts of a pine tree collected in Chernobyl-contaminated area in Belarus were determined. Samples include annual tree rings of wood, branches and needles with different ages. The concentrations of 137 Cs and stable Cs in annual tree rings were the highest in cambium and decreased sharply towards inside. The youngest needles and branches contained higher 137 Cs and stable Cs than older ones. The concentration of 137 Cs being highest in growing parts suggests the highest radiation dose to the radiation-sensitive parts of tree. Distribution patterns of stable elements in pine tree differ among the elements. Distributions similar to those of Cs were observed for K and Rb, suggesting that alkaline metals tend to be translocated to young growing parts of pine tree. A similar distribution was also observed for phosphorus. Distributions of alkaline earth metals and several heavy metals were different from those of alkaline metals. (authors)

Bioecology of tulip trees at the Ajara Black Sea coast

Directory of Open Access Journals (Sweden)

Tamara Tskhoidze

2013-04-01

Full Text Available Tulip trees (Liriodendron tulipifera L. andLiriodendron chinense(Hemsl. Sarg. grow well along the Batumi coastline, develop, bloom, produce fruit, give natural revival. There they already have blooming and fruiting self-seeds. Chinese tulip poplar sometimes reaches here bigger sizes than in natural habitat. It resists winter temperatures very well. Both species can be jointly used along the Caucasian Black Sea coast as ornamental trees because there are the most favorable conditions for their vegetation. Due the great resistance American tulip trees can grow along the coastline as well as inland of Ajara.

Effects of different floor housing systems on the welfare of fast-growing broilers with an extended fattening period

Directory of Open Access Journals (Sweden)

E. Çavuşoğlu

2018-01-01

Full Text Available This study was made to investigate the long-term effects of different floor housing systems on the welfare of fast-growing broilers. The experiment was performed on 210-day-old fast-growing hybrid male chickens with identical conditions until 47 days of age. Animal-based welfare parameters were measured to investigate the welfare level in the group housed on deep litter, a litter and slat system, and a slatted floor, with five replicates for each group. Results showed that the main welfare indicators in live birds, such breast dirtiness, plumage score, footpad lesion, and hock burn lesion, were negatively affected in broilers kept on conventional deep-litter floor housing. But hemorrhage or lesion scores of the breast and shoulder of broilers in slat floor housing were found to be significantly greater than in conventional deep litter as a result of a heavy body weight at a greater slaughter age (p < 0.05. Pathologically, the prevalence of footpad and hock joint dermatitis was very high in the deep-litter housing system. Femoral head necrosis was not observed in any floor housing group. The results indicated that keeping broilers on a slat flooring system is preferable for younger slaughter ages and for a lighter slaughter weight. When considering the relationship between animal welfare and production economy, moving from one floor house system to another floor housing system should be carefully weighted in future decisions. Moreover, further investigations are needed in order to examine the incidence of joint and bone problems with muscle inflammation in heavier broilers in commercial conditions.

Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil.

Science.gov (United States)

Gonzalez, Emmanuel; Brereton, Nicholas J B; Marleau, Julie; Guidi Nissim, Werther; Labrecque, Michel; Pitre, Frederic E; Joly, Simon

2015-10-12

High concentrations of petroleum hydrocarbon (PHC) pollution can be hazardous to human health and leave soils incapable of supporting agricultural crops. A cheap solution, which can help restore biodiversity and bring land back to productivity, is cultivation of high biomass yielding willow trees. However, the genetic mechanisms which allow these fast-growing trees to tolerate PHCs are as yet unclear. Salix purpurea 'Fish Creek' trees were pot-grown in soil from a former petroleum refinery, either lacking or enriched with C10-C50 PHCs. De novo assembled transcriptomes were compared between tree organs and impartially annotated without a priori constraint to any organism. Over 45% of differentially expressed genes originated from foreign organisms, the majority from the two-spotted spidermite, Tetranychus urticae. Over 99% of T. urticae transcripts were differentially expressed with greater abundance in non-contaminated trees. Plant transcripts involved in the polypropanoid pathway, including phenylalanine ammonia-lyase (PAL), had greater expression in contaminated trees whereas most resistance genes showed higher expression in non-contaminated trees. The impartial approach to annotation of the de novo transcriptomes, allowing for the possibility for multiple species identification, was essential for interpretation of the crop's response treatment. The meta-transcriptomic pattern of expression suggests a cross-tolerance mechanism whereby abiotic stress resistance systems provide improved biotic resistance. These findings highlight a valuable but complex biotic and abiotic stress response to real-world, multidimensional contamination which could, in part, help explain why crops such as willow can produce uniquely high biomass yields on challenging marginal land.

A hierarchical scheme for geodesic anatomical labeling of airway trees

DEFF Research Database (Denmark)

Feragen, Aasa; Petersen, Jens; Owen, Megan

2012-01-01

We present a fast and robust supervised algorithm for label- ing anatomical airway trees, based on geodesic distances in a geometric tree-space. Possible branch label configurations for a given unlabeled air- way tree are evaluated based on the distances to a training set of labeled airway trees....... In tree-space, the airway tree topology and geometry change continuously, giving a natural way to automatically handle anatomical differences and noise. The algorithm is made efficient using a hierarchical approach, in which labels are assigned from the top down. We only use features of the airway...

Economic Valuation of Urban Trees: Ribnjak Park Case Study, Zagreb

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Karlo Beljan

2015-06-01

Full Text Available Background and Purpose: Population growth, urbanisation and technological development are creating a growing need for urban forests and parks, which are becoming green oases for recreation and relaxation. Apart from the sociological and economic components, urban forest valuation is presented through tourism, the market value of main and secondary forest products, and the growing value of real estate in the vicinity of green areas. Environmental economics explores the optimal ratio between the costs and the benefits received from the investment in the environment. The aim of this research is monetary valuation of urban trees. Materials and Methods: A Danish model for tree value determination was applied in Ribnjak Park as a case study. The model is based on tree growing costs and the present value. It is limited by the subjective aesthetic tree value estimation, but it is used in Europe because of its practicality. Individual tree value estimation is used because of the tree damage from vehicles or new residential buildings. The method is suitable for individual trees or groups of trees, but it is not appropriate for forest stands. Twenty random selected trees from nine different tree species have been analysed in the park. Diameter at breast height, tree height, expected age, aesthetic value and location were recorded for each tree. Furthermore, ecological, social and health tree values were taken into account separately with the calculation of points. Results: According to the evaluation, the average monetary value of one tree in Ribnjak Park is 542 EUR. The average diameter at breast height is 57.86 cm with the average age of 96.14 years. Plane trees have the highest value in comparison to other sampled species. Conclusions: Tree values vary depending on age, dimension or aesthetic values. The disadvantage of this method is in the estimation of very old tree value and in high involvement of personal estimation, which creates an opportunity

Diurnal and seasonal changes in stem increment and water use by yellow poplar trees in response to environmental stress.

Science.gov (United States)

McLaughlin, Samuel B; Wullschleger, Stan D; Nosal, Miloslav

2003-11-01

To evaluate indicators of whole-tree physiological responses to climate stress, we determined seasonal, daily and diurnal patterns of growth and water use in 10 yellow poplar (Liriodendron tulipifera L.) trees in a stand recently released from competition. Precise measurements of stem increment and sap flow made with automated electronic dendrometers and thermal dissipation probes, respectively, indicated close temporal linkages between water use and patterns of stem shrinkage and swelling during daily cycles of water depletion and recharge of extensible outer-stem tissues. These cycles also determined net daily basal area increment. Multivariate regression models based on a 123-day data series showed that daily diameter increments were related negatively to vapor pressure deficit (VPD), but positively to precipitation and temperature. The same model form with slight changes in coefficients yielded coefficients of determination of about 0.62 (0.57-0.66) across data subsets that included widely variable growth rates and VPDs. Model R2 was improved to 0.75 by using 3-day running mean daily growth data. Rapid recovery of stem diameter growth following short-term, diurnal reductions in VPD indicated that water stored in extensible stem tissues was part of a fast recharge system that limited hydration changes in the cambial zone during periods of water stress. There were substantial differences in the seasonal dynamics of growth among individual trees, and analyses indicated that faster-growing trees were more positively affected by precipitation, solar irradiance and temperature and more negatively affected by high VPD than slower-growing trees. There were no negative effects of ozone on daily growth rates in a year of low ozone concentrations.

Decision tree modeling using R.

Science.gov (United States)

Zhang, Zhongheng

2016-08-01

In machine learning field, decision tree learner is powerful and easy to interpret. It employs recursive binary partitioning algorithm that splits the sample in partitioning variable with the strongest association with the response variable. The process continues until some stopping criteria are met. In the example I focus on conditional inference tree, which incorporates tree-structured regression models into conditional inference procedures. While growing a single tree is subject to small changes in the training data, random forests procedure is introduced to address this problem. The sources of diversity for random forests come from the random sampling and restricted set of input variables to be selected. Finally, I introduce R functions to perform model based recursive partitioning. This method incorporates recursive partitioning into conventional parametric model building.

Instrumental neutron activation analysis of tree rings for dendrochemical studies

International Nuclear Information System (INIS)

Schaumloffel, J.C.; Filby, R.H.

1996-01-01

Instrumental neutron activation analysis (INAA) was employed to determine zinc, cadmium and potassium concentrations in the growth rings of ponderosa pine (Pinus ponderosa Dougl.) trees growing along the shores of Lake Roosevelt in Washington State, U.S.A. where mineral processing activities have resulted in high burdens of zinc and cadmium in the lake sediments. The tree growing along the contaminated waterway display elevated concentrations of zinc in its growth rings relative to a tree growing along an uncontaminated tributary of Lake Roosevelt. Cadmium concentrations in the growth rings from both sites are similar from 1988 to 1993. Water quality data indicate an increased concentration of cadmium in the lake from 1984 to 1988. The increased concentrations of cadmium in the lake water were reflected in apparent increases in concentrations of cadmium in individual rings of the tree sampled at the contaminated site. This suggests that translocation of cadmium in the sapwood of heartwood-forming species does not occur in the short term, and thus may not be a limiting factor in using trees as environmental monitors for cadmium. In addition, five-year tree ring segments were analyzed and subsequently reanalyzed as individual single-year ring segments. The analytical data obtained for the pooled individual rings are essentially the same as for the five-year segments, demonstrating the utility of NAA for dendrochemical studies. (author). 24 refs., 5 figs., 2 tabs

Ficus religiosa L. (English: Peepal tree or sacred fig; Hindi: Pippal ...

Indian Academy of Sciences (India)

Ficus religiosa L. (English: Peepal tree or sacred fig; Hindi: Pippal) of Moraceae is a large deciduous tree that grows wild as well as cultivated. The picture shows the tree with fresh flush of leaves. The tree is planted chiefly near the temples by Hindus and Buddhists who regard it as sacred. The characteristic heart-shaped ...

Tree growth and its climate signal along latitudinal and altitudinal gradients: comparison of tree rings between Finland and the Tibetan Plateau

Directory of Open Access Journals (Sweden)

L. Lyu

2017-06-01

Full Text Available Latitudinal and altitudinal gradients can be utilized to forecast the impact of climate change on forests. To improve the understanding of how these gradients impact forest dynamics, we tested two hypotheses: (1 the change of the tree growth–climate relationship is similar along both latitudinal and altitudinal gradients, and (2 the time periods during which climate affects growth the most occur later towards higher latitudes and altitudes. To address this, we utilized tree-ring data from a latitudinal gradient in Finland and from two altitudinal gradients on the Tibetan Plateau. We analysed the latitudinal and altitudinal growth patterns in tree rings and investigated the growth–climate relationship of trees by correlating ring-width index chronologies with climate variables, calculating with flexible time windows, and using daily-resolution climate data. High latitude and altitude plots showed higher correlations between tree-ring chronologies and growing season temperature. However, the effects of winter temperature showed contrasting patterns for the gradients. The timing of the highest correlation with temperatures during the growing season at southern sites was approximately 1 month ahead of that at northern sites in the latitudinal gradient. In one out of two altitudinal gradients, the timing for the strongest negative correlation with temperature at low-altitude sites was ahead of treeline sites during the growing season, possibly due to differences in moisture limitation. Mean values and the standard deviation of tree-ring width increased with increasing mean July temperatures on both types of gradients. Our results showed similarities of tree growth responses to increasing seasonal temperature between latitudinal and altitudinal gradients. However, differences in climate–growth relationships were also found between gradients due to differences in other factors such as moisture conditions. Changes in the timing of the most

Timing-Driven-Testable Convergent Tree Adders

Directory of Open Access Journals (Sweden)

Johnnie A. Huang

2002-01-01

Full Text Available Carry lookahead adders have been, over the years, implemented in complex arithmetic units due to their regular structure which leads to efficient VLSI implementation for fast adders. In this paper, timing-driven testability synthesis is first performed on a tree adder. It is shown that the structure of the tree adder provides for a high fanout with an imbalanced tree structure, which likely contributes to a racing effect and increases the delay of the circuit. The timing optimization is then realized by reducing the maximum fanout of the adder and by balancing the tree circuit. For a 56-b testable tree adder, the optimization produces a 6.37%increase in speed of the critical path while only contributing a 2.16% area overhead. The full testability of the circuit is achieved in the optimized adder design.

Why do trees die? Characterizing the drivers of background tree mortality

Science.gov (United States)

Das, Adrian J.; Stephenson, Nathan L.; Davis, Kristin P.

2016-01-01

The drivers of background tree mortality rates—the typical low rates of tree mortality found in forests in the absence of acute stresses like drought—are central to our understanding of forest dynamics, the effects of ongoing environmental changes on forests, and the causes and consequences of geographical gradients in the nature and strength of biotic interactions. To shed light on factors contributing to background tree mortality, we analyzed detailed pathological data from 200,668 tree-years of observation and 3,729 individual tree deaths, recorded over a 13-yr period in a network of old-growth forest plots in California's Sierra Nevada mountain range. We found that: (1) Biotic mortality factors (mostly insects and pathogens) dominated (58%), particularly in larger trees (86%). Bark beetles were the most prevalent (40%), even though there were no outbreaks during the study period; in contrast, the contribution of defoliators was negligible. (2) Relative occurrences of broad classes of mortality factors (biotic, 58%; suppression, 51%; and mechanical, 25%) are similar among tree taxa, but may vary with tree size and growth rate. (3) We found little evidence of distinct groups of mortality factors that predictably occur together on trees. Our results have at least three sets of implications. First, rather than being driven by abiotic factors such as lightning or windstorms, the “ambient” or “random” background mortality that many forest models presume to be independent of tree growth rate is instead dominated by biotic agents of tree mortality, with potentially critical implications for forecasting future mortality. Mechanistic models of background mortality, even for healthy, rapidly growing trees, must therefore include the insects and pathogens that kill trees. Second, the biotic agents of tree mortality, instead of occurring in a few predictable combinations, may generally act opportunistically and with a relatively large degree of independence from

Bi-level image compression with tree coding

DEFF Research Database (Denmark)

Martins, Bo; Forchhammer, Søren

1996-01-01

Presently, tree coders are the best bi-level image coders. The current ISO standard, JBIG, is a good example. By organising code length calculations properly a vast number of possible models (trees) can be investigated within reasonable time prior to generating code. Three general-purpose coders...... are constructed by this principle. A multi-pass free tree coding scheme produces superior compression results for all test images. A multi-pass fast free template coding scheme produces much better results than JBIG for difficult images, such as halftonings. Rissanen's algorithm `Context' is presented in a new...

7 CFR 319.37-8 - Growing media.

Science.gov (United States)

2010-01-01

... plants) established solely on tree fern slabs, coconut husks, coconut fiber, new clay pots, or new wooden...) Approved growing media are baked expanded clay pellets, coal cinder, coir, cork, glass wool, organic and... this section; (ii) Grown solely in a greenhouse in which sanitary procedures adequate to exclude plant...

Eucalypt pests and diseases: growing threats to plantation productivity

African Journals Online (AJOL)

Eucalypt pests and diseases: growing threats to plantation productivity. ... Southern Forests: a Journal of Forest Science ... plantations, it is clear that separation of the trees from their natural enemies has resulted in exceptional performance.

Age-related changes in tree growth and physiology

Science.gov (United States)

Andrew Groover

2017-01-01

Trees pass through specific developmental phases as they age, including juvenile to adult, and vegetative to reproductive phases. The timing of these transitions is regulated genetically but is also highly influenced by the environment. Tree species have evolved different strategies and life histories that affect how they age – for example some pioneer species are fast...

The stopping rules for winsorized tree

Science.gov (United States)

Ch'ng, Chee Keong; Mahat, Nor Idayu

2017-11-01

Winsorized tree is a modified tree-based classifier that is able to investigate and to handle all outliers in all nodes along the process of constructing the tree. It overcomes the tedious process of constructing a classical tree where the splitting of branches and pruning go concurrently so that the constructed tree would not grow bushy. This mechanism is controlled by the proposed algorithm. In winsorized tree, data are screened for identifying outlier. If outlier is detected, the value is neutralized using winsorize approach. Both outlier identification and value neutralization are executed recursively in every node until predetermined stopping criterion is met. The aim of this paper is to search for significant stopping criterion to stop the tree from further splitting before overfitting. The result obtained from the conducted experiment on pima indian dataset proved that the node could produce the final successor nodes (leaves) when it has achieved the range of 70% in information gain.

Comparing Individual Tree Segmentation Based on High Resolution Multispectral Image and Lidar Data

Science.gov (United States)

Xiao, P.; Kelly, M.; Guo, Q.

2014-12-01

This study compares the use of high-resolution multispectral WorldView images and high density Lidar data for individual tree segmentation. The application focuses on coniferous and deciduous forests in the Sierra Nevada Mountains. The tree objects are obtained in two ways: a hybrid region-merging segmentation method with multispectral images, and a top-down and bottom-up region-growing method with Lidar data. The hybrid region-merging method is used to segment individual tree from multispectral images. It integrates the advantages of global-oriented and local-oriented region-merging strategies into a unified framework. The globally most-similar pair of regions is used to determine the starting point of a growing region. The merging iterations are constrained within the local vicinity, thus the segmentation is accelerated and can reflect the local context. The top-down region-growing method is adopted in coniferous forest to delineate individual tree from Lidar data. It exploits the spacing between the tops of trees to identify and group points into a single tree based on simple rules of proximity and likely tree shape. The bottom-up region-growing method based on the intensity and 3D structure of Lidar data is applied in deciduous forest. It segments tree trunks based on the intensity and topological relationships of the points, and then allocate other points to exact tree crowns according to distance. The accuracies for each method are evaluated with field survey data in several test sites, covering dense and sparse canopy. Three types of segmentation results are produced: true positive represents a correctly segmented individual tree, false negative represents a tree that is not detected and assigned to a nearby tree, and false positive represents that a point or pixel cluster is segmented as a tree that does not in fact exist. They respectively represent correct-, under-, and over-segmentation. Three types of index are compared for segmenting individual tree

Concurrent Operations of O2-Tree on Shared Memory Multicore Architectures

Directory of Open Access Journals (Sweden)

Daniel Ohene-Kwofie

2014-05-01

Full Text Available Modern computer architectures provide high performance computing capability by having multiple CPU cores. Such systems are also typically associated with very large main-memory capacities, thereby allowing them to be used for fast processing of in-memory database applications. However, most of the concurrency control mechanism associated with the index structures of these memory resident databases do not scale well, under high transaction rates. This paper presents the O2-Tree, a fast main memory resident index, which is also highly scalable and tolerant of high transaction rates in a concurrent environment using the relaxed balancing tree algorithm. The O2-Tree is a modified Red-Black tree in which the leaf nodes are formed into blocks that hold key-value pairs, while each internal node stores a single key that results from splitting leaf nodes. Multi-threaded concurrent manipulation of the O2-Tree outperforms popular NoSQL based key-value stores considered in this paper.

Wind loads and competition for light sculpt trees into self-similar structures.

Science.gov (United States)

Eloy, Christophe; Fournier, Meriem; Lacointe, André; Moulia, Bruno

2017-10-18

Trees are self-similar structures: their branch lengths and diameters vary allometrically within the tree architecture, with longer and thicker branches near the ground. These tree allometries are often attributed to optimisation of hydraulic sap transport and safety against elastic buckling. Here, we show that these allometries also emerge from a model that includes competition for light, wind biomechanics and no hydraulics. We have developed MECHATREE, a numerical model of trees growing and evolving on a virtual island. With this model, we identify the fittest growth strategy when trees compete for light and allocate their photosynthates to grow seeds, create new branches or reinforce existing ones in response to wind-induced loads. Strikingly, we find that selected trees species are self-similar and follow allometric scalings similar to those observed on dicots and conifers. This result suggests that resistance to wind and competition for light play an essential role in determining tree allometries.

Insect outbreak shifts the direction of selection from fast to slow growth rates in the long-lived conifer Pinus ponderosa.

Science.gov (United States)

de la Mata, Raul; Hood, Sharon; Sala, Anna

2017-07-11

Long generation times limit species' rapid evolution to changing environments. Trees provide critical global ecosystem services, but are under increasing risk of mortality because of climate change-mediated disturbances, such as insect outbreaks. The extent to which disturbance changes the dynamics and strength of selection is unknown, but has important implications on the evolutionary potential of tree populations. Using a 40-y-old Pinus ponderosa genetic experiment, we provide rare evidence of context-dependent fluctuating selection on growth rates over time in a long-lived species. Fast growth was selected at juvenile stages, whereas slow growth was selected at mature stages under strong herbivory caused by a mountain pine beetle ( Dendroctonus ponderosae ) outbreak. Such opposing forces led to no net evolutionary response over time, thus providing a mechanism for the maintenance of genetic diversity on growth rates. Greater survival to mountain pine beetle attack in slow-growing families reflected, in part, a host-based life-history trade-off. Contrary to expectations, genetic effects on tree survival were greatest at the peak of the outbreak and pointed to complex defense responses. Our results suggest that selection forces in tree populations may be more relevant than previously thought, and have implications for tree population responses to future environments and for tree breeding programs.

Dominant clonal Eucalyptus grandis x urophylla trees use water more efficiently

Science.gov (United States)

Marina Shinkai Gentil Otto; Robert M. Hubbard; Dan Binkley; Jose Luis Stape

2014-01-01

Wood growth in trees depends on the acquisition of resources, and can vary with tree size leading to a variety of stand dynamics. Typically, larger trees obtain more resources and grow faster than smaller trees, but while light has been addressed more often, few case studies have investigated the contributions of water use and water use efficiency (WUE) within stands...

Topological leakage detection and freeze-and-grow propagation for improved CT-based airway segmentation

Science.gov (United States)

Nadeem, Syed Ahmed; Hoffman, Eric A.; Sieren, Jered P.; Saha, Punam K.

2018-03-01

Numerous large multi-center studies are incorporating the use of computed tomography (CT)-based characterization of the lung parenchyma and bronchial tree to understand chronic obstructive pulmonary disease status and progression. To the best of our knowledge, there are no fully automated airway tree segmentation methods, free of the need for user review. A failure in even a fraction of segmentation results necessitates manual revision of all segmentation masks which is laborious considering the thousands of image data sets evaluated in large studies. In this paper, we present a novel CT-based airway tree segmentation algorithm using topological leakage detection and freeze-and-grow propagation. The method is fully automated requiring no manual inputs or post-segmentation editing. It uses simple intensity-based connectivity and a freeze-and-grow propagation algorithm to iteratively grow the airway tree starting from an initial seed inside the trachea. It begins with a conservative parameter and then, gradually shifts toward more generous parameter values. The method was applied on chest CT scans of fifteen subjects at total lung capacity. Airway segmentation results were qualitatively assessed and performed comparably to established airway segmentation method with no major visual leakages.

Different Patterns of Changes in the Dry Season Diameter at Breast Height of Dominant and Evergreen Tree Species in a Mature Subtropical Forest in South China

Institute of Scientific and Technical Information of China (English)

Jun-Hua Yan; Guo-Yi Zhou; De-Qiang Zhang; Xu-Li Tang; Xu Wang

2006-01-01

Information on changes in diameter at breast height (DBH) is important for net primary production (NPP)estimates, timing of forest inventory, and forest management. In the present study, patterns of DBH change were measured under field conditions during the dry season for three dominant and native tree species in a monsoon evergreen broad-leaved forest in the Dinghushan Biosphere Reserve. For each tree species,different patterns of DBH change were observed. In the case of the fast-growing tree species Castanopsis chinensis Hance, large diurnal fluctuations occur, with a peak DBH in the early morning (around 05:00 h) that decreases to a minimum by about 14:00 h. Both Schima superba Gardn. et Chemp and Cryptocarya chinensis (Hance) Hemsl. exhibited less diurnal swelling and shrinkage. Diurnal fluctuations for these species were observed on a few occasions over the period of observation. Graphical comparisons and statistical analysis of changes in DBH with meteorological variables indicate that for different trees, the different changes in DBH observed responded to different meteorological variables. Large stem changes were found to occur for Ca. chinensis trees that were associated with variations in solar radiation. However, both S. superba and Cr. chinensis were found to be less sensitive to solar radiation. Changes in the DBH of these two species were found to be controlled mainly by soil temperature and soil moisture. During the later dry season, with a lower soil temperature and soil moisture, all three tree species stopped growing and only negligible shrinkage, expansion, or fluctuation occurred, suggesting that the optimum time to measure tree growth in the Dinghushan Biosphere Reserve is the later dry season.

Dendrochronology and bark anatomy of the frankincense tree

NARCIS (Netherlands)

Tolera Feyissa, M.

2013-01-01

Boswellia papyrifera(Burseraceae) trees grow in drylands south of the Sahara. In Ethiopia, it grows in seasonally dry Combretum-Terminalia woodlands. It is a source of frankincense, an economically important olio-gum resin used for cultural and religious ceremonies throughout

Tree production in desert regions using effluent and water harvesting

Science.gov (United States)

Martin M. Karpiscak; Gerald J. Gottfried

2000-01-01

Treated municipal effluent combined with water harvesting can be used for land restoration and enhancing the growth of important riparian tree species. Paired studies in Arizona are assessing the potential of growing trees using mixtures of effluent and potable water. Trees are grown in the field and in containers. Initial results from the field show high survival for...

Carbon storage in Jatropha curcas trees in Northern Tanzania

NARCIS (Netherlands)

Hellings, B.F.; Romijn, H.A.; Franken, Y.J.

2012-01-01

This study investigates the carbon sequestration capacity of Jatropha curcas, a tropical tree-like shrub that is widely cultivated for the production of oilseeds for biodiesel and biokerosene. It applies a destructive research approach on fifteen Jatropha trees of different ages growing in the field

Nutrient removal by apple, pear and cherry nursery trees

OpenAIRE

Giovambattista Sorrenti; Maurizio Quartieri; Silvia Salvi; Moreno Toselli

2017-01-01

Given that nursery is a peculiar environment, the amount of nutrients removed by nursery trees represents a fundamental acquisition to optimise fertilisation strategies, with economic and environmental implications. In this context, we determined nutrient removal by apple, pear and cherry nursery trees at the end of the nursery growing cycle. We randomly removed 5 leafless apple (Golden Delicious/EMLA M9; density of 30,000 trees ha–1), pear (Santa Maria/Adams; density of 30,000 trees ha–1) an...

Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance

Science.gov (United States)

2013-01-01

Background Constructing species trees from multi-copy gene trees remains a challenging problem in phylogenetics. One difficulty is that the underlying genes can be incongruent due to evolutionary processes such as gene duplication and loss, deep coalescence, or lateral gene transfer. Gene tree estimation errors may further exacerbate the difficulties of species tree estimation. Results We present a new approach for inferring species trees from incongruent multi-copy gene trees that is based on a generalization of the Robinson-Foulds (RF) distance measure to multi-labeled trees (mul-trees). We prove that it is NP-hard to compute the RF distance between two mul-trees; however, it is easy to calculate this distance between a mul-tree and a singly-labeled species tree. Motivated by this, we formulate the RF problem for mul-trees (MulRF) as follows: Given a collection of multi-copy gene trees, find a singly-labeled species tree that minimizes the total RF distance from the input mul-trees. We develop and implement a fast SPR-based heuristic algorithm for the NP-hard MulRF problem. We compare the performance of the MulRF method (available at http://genome.cs.iastate.edu/CBL/MulRF/) with several gene tree parsimony approaches using gene tree simulations that incorporate gene tree error, gene duplications and losses, and/or lateral transfer. The MulRF method produces more accurate species trees than gene tree parsimony approaches. We also demonstrate that the MulRF method infers in minutes a credible plant species tree from a collection of nearly 2,000 gene trees. Conclusions Our new phylogenetic inference method, based on a generalized RF distance, makes it possible to quickly estimate species trees from large genomic data sets. Since the MulRF method, unlike gene tree parsimony, is based on a generic tree distance measure, it is appealing for analyses of genomic data sets, in which many processes such as deep coalescence, recombination, gene duplication and losses as

TREE2FASTA: a flexible Perl script for batch extraction of FASTA sequences from exploratory phylogenetic trees.

Science.gov (United States)

Sauvage, Thomas; Plouviez, Sophie; Schmidt, William E; Fredericq, Suzanne

2018-03-05

The body of DNA sequence data lacking taxonomically informative sequence headers is rapidly growing in user and public databases (e.g. sequences lacking identification and contaminants). In the context of systematics studies, sorting such sequence data for taxonomic curation and/or molecular diversity characterization (e.g. crypticism) often requires the building of exploratory phylogenetic trees with reference taxa. The subsequent step of segregating DNA sequences of interest based on observed topological relationships can represent a challenging task, especially for large datasets. We have written TREE2FASTA, a Perl script that enables and expedites the sorting of FASTA-formatted sequence data from exploratory phylogenetic trees. TREE2FASTA takes advantage of the interactive, rapid point-and-click color selection and/or annotations of tree leaves in the popular Java tree-viewer FigTree to segregate groups of FASTA sequences of interest to separate files. TREE2FASTA allows for both simple and nested segregation designs to facilitate the simultaneous preparation of multiple data sets that may overlap in sequence content.

Whole-tree distribution and temporal variation of non-structural carbohydrates in broadleaf evergreen trees.

Science.gov (United States)

Smith, Merryn G; Miller, Rebecca E; Arndt, Stefan K; Kasel, Sabine; Bennett, Lauren T

2018-04-01

Non-structural carbohydrates (NSCs) form a fundamental yet poorly quantified carbon pool in trees. Studies of NSC seasonality in forest trees have seldom measured whole-tree NSC stocks and allocation among organs, and are not representative of all tree functional types. Non-structural carbohydrate research has primarily focussed on broadleaf deciduous and coniferous evergreen trees with distinct growing seasons, while broadleaf evergreen trees remain under-studied despite their different growth phenology. We measured whole-tree NSC allocation and temporal variation in Eucalyptus obliqua L'Hér., a broadleaf evergreen tree species typically occurring in mixed-age temperate forests, which has year-round growth and the capacity to resprout after fire. Our overarching objective was to improve the empirical basis for understanding the functional importance of NSC allocation and stock changes at the tree- and organ-level in this tree functional type. Starch was the principal storage carbohydrate and was primarily stored in the stem and roots of young (14-year-old) trees rather than the lignotuber, which did not appear to be a specialized starch storage organ. Whole-tree NSC stocks were depleted during spring and summer due to significant decreases in starch mass in the roots and stem, seemingly to support root and crown growth but potentially exacerbated by water stress in summer. Seasonality of stem NSCs differed between young and mature trees, and was not synchronized with stem basal area increments in mature trees. Our results suggest that the relative magnitude of seasonal NSC stock changes could vary with tree growth stage, and that the main drivers of NSC fluctuations in broadleaf evergreen trees in temperate biomes could be periodic disturbances such as summer drought and fire, rather than growth phenology. These results have implications for understanding post-fire tree recovery via resprouting, and for incorporating NSC pools into carbon models of mixed

Effect of automobile pollution on chlorophyll content of roadside urban trees

Directory of Open Access Journals (Sweden)

M. Iqbal

2015-09-01

Full Text Available The effect of automobile pollution was determined on chlorophyll content of four different tree species viz. Azadirachta indica L., Conocarpus erectus L., Guiacum officinale L.and Eucalyptus sp. growing along the roads of the city.  Significant changes in the level of chlorophyll “a”, chlorophyll “b” and total chlorophyll “a+b” were found in the leaves of four tree species (A. indica, C. erectus, G.officinale and Eucalyptus sp. collected from polluted sites (Airport, Malir Halt, Quaidabad as compared to control site (Karachi University Campus. Lowest concentration of chlorophyll “a”, chlorophyll “b” and chlorophyll “a+b” was recorded in the leaf samples of all tree species collected from Quaidabad site when compared with the leaf samples collected from control site. The highest levels of chlorophyll pigment were recorded in all tree species leave samples collected from Karachi University Campus.  Similarly, better levels of chlorophyll “a”, chlorophyll “b” and total chlorophyll “a+b” was observed in all tree species growing at Airport site as compared to plants growing at Malir Halt and Quaidabad sites.  This study clearly indicated that the vehicular activities induced air pollution problem and affected on the level of chlorophyll pigments in trees which were exposed to road side pollution.

The role of forest trees and their mycorrhizal fungi in carbonate rock weathering and its significance for global carbon cycling.

Science.gov (United States)

Thorley, Rachel M S; Taylor, Lyla L; Banwart, Steve A; Leake, Jonathan R; Beerling, David J

2015-09-01

On million-year timescales, carbonate rock weathering exerts no net effect on atmospheric CO2 concentration. However, on timescales of decades-to-centuries, it can contribute to sequestration of anthropogenic CO2 and increase land-ocean alkalinity flux, counteracting ocean acidification. Historical evidence indicates this flux is sensitive to land use change, and recent experimental evidence suggests that trees and their associated soil microbial communities are major drivers of continental mineral weathering. Here, we review key physical and chemical mechanisms by which the symbiotic mycorrhizal fungi of forest tree roots potentially enhance carbonate rock weathering. Evidence from our ongoing field study at the UK's national pinetum confirms increased weathering of carbonate rocks by a wide range of gymnosperm and angiosperm tree species that form arbuscular (AM) or ectomycorrhizal (EM) fungal partnerships. We demonstrate that calcite-containing rock grains under EM tree species weather significantly faster than those under AM trees, an effect linked to greater soil acidification by EM trees. Weathering and corresponding alkalinity export are likely to increase with rising atmospheric CO2 and associated climate change. Our analyses suggest that strategic planting of fast-growing EM angiosperm taxa on calcite- and dolomite-rich terrain might accelerate the transient sink for atmospheric CO2 and slow rates of ocean acidification. © 2014 The Authors. Plant, Cell & Environment published by John Wiley & Sons Ltd.

Radionuclide levels in vegetation growing on uranium tailings, Elliot Lake, Ontario

International Nuclear Information System (INIS)

Pave, N.K.; Cloutier, N.R.; Lim, T.P.

1985-01-01

In Elliot Lake, Ontario, Canada, most of the inactive uranium tailings have been reclaimed by revegetation where a thick vegetation cover has been established. The surface amendments have also prompted volunteer growth of various species of local trees and shrubs on tailings. Radionuclide levels were measured in various tissues of grasses, legumes and trees growing on uranium tailings at different sites. Lower Th than Ra and Pb levels in tailings substrate were believed to be the cause for the relatively lower Th levels measured in vegetation when compared to Ra and Pb concentrations. No correlation was observed between the level of a given radionuclide in tailings and in the vegetation growing on that tailings

TREAT (TREe-based Association Test)

Science.gov (United States)

TREAT is an R package for detecting complex joint effects in case-control studies. The test statistic is derived from a tree-structure model by recursive partitioning the data. Ultra-fast algorithm is designed to evaluate the significance of association between candidate gene and disease outcome

Fast Coding Unit Encoding Mechanism for Low Complexity Video Coding

OpenAIRE

Gao, Yuan; Liu, Pengyu; Wu, Yueying; Jia, Kebin; Gao, Guandong

2016-01-01

In high efficiency video coding (HEVC), coding tree contributes to excellent compression performance. However, coding tree brings extremely high computational complexity. Innovative works for improving coding tree to further reduce encoding time are stated in this paper. A novel low complexity coding tree mechanism is proposed for HEVC fast coding unit (CU) encoding. Firstly, this paper makes an in-depth study of the relationship among CU distribution, quantization parameter (QP) and content ...

Variations of Mercury Concentrations in American Beech Foliage over a Growing Season

Science.gov (United States)

Stinson, I.; Tsui, M. T. K.; Chow, A. T.

2017-12-01

Accumulation of atmospheric gaseous mercury (Hg) in foliage is well known, however, a small fraction of Hg always exists as highly bioavailable methylmercury (MeHg) in foliage but the source of MeHg in foliage is unknown. Recent studies suggested in-vivo Hg methylation in foliage while others suggested external inputs (e.g., precipitation) as sources of MeHg in foliage. This study assesses the accumulation of total Hg and MeHg within the foliage of a small sample set of American Beech trees, one of the common tree species in the east coast and the study site is located within the campus of University of North Carolina - Greensboro, over the growing season in 2017 (spring, summer, and fall). In addition, this study evaluates the Hg concentrations in foliage as related to other physiological parameters (e.g., stomatal density, leaf area, chlorophyll, and carbon/nitrogen content) and the changes in environmental characteristics (e.g., sunlight) over the growing season. For this investigation, five American Beech trees with varying characteristics (height, age, and location) were selected. On a biweekly basis, starting late April 2017, foliage samples were collected and composited from different positions on each tree. For the samples processed to date, our results indicate that total Hg accumulation is occurring for all five trees with an initial mean value of 5.79 ng/g, increasing to a mean value of 13.9 ng/g over a ten-week period. Coincidentally, there has been a similar increase in chlorophyll (a+b) concentrations for the foliage, and there is a strong, positive relationship between chlorophyll and total-Hg concentrations. However, we found no relationships between total Hg concentrations and stomatal density of foliage or carbon/nitrogen content. This study is still ongoing and will continue through the end of the growing season in 2017. Additionally, from the same sample sets, besides total Hg analysis and other ancillary parameters in foliage, MeHg analysis

Zoning Of Apple Trees In Province Of Khorasan Razavi Iran

Directory of Open Access Journals (Sweden)

Mokhtar Karami

2015-08-01

Full Text Available The main objective of this study was to investigate the feasibility of prone areas for apple cultivation in Razavi Khorasan province. Therefore in this study criteria and sub criteria were considered to determine suitable areas for growing apple trees and due to the importance of data integration Analytic Hierarchy Process AHP was selected to determine the weight of layers. The software ArcGIS version 10.2.2 was used to analyze the spatial and overlapping layers after data analysis in terms of growing apple trees Razavi Khorasan province was divided into four levels very good good average and bad. The results showed that suitable areas for growing apple trees in the studied area are located in the south east northeast and center of the province including Sarakhs Neyshaboor Gonabad and Kashmar stations with an area of over 4364789.32 hectares which is about 48.34 of the total area of the province.

Why Do Fast-Growing Bacteria Enter Overflow Metabolism? Testing the Membrane Real Estate Hypothesis.

Science.gov (United States)

Szenk, Mariola; Dill, Ken A; de Graff, Adam M R

2017-08-23

Bacteria and other cells show a puzzling behavior. At high growth rates, E. coli switch from respiration (which is ATP-efficient) to using fermentation for additional ATP (which is inefficient). This overflow metabolism results in a several-fold decrease in ATP produced per glucose molecule provided as food. By integrating diverse types of experimental data into a simple biophysical model, we give evidence that this onset is the result of the membrane real estate hypothesis: Fast growth drives cells to be bigger, reducing their surface-to-volume ratios. This decreases the membrane area available for respiratory proteins despite growing demand, causing increased crowding. Only when respiratory proteins reach their crowding limit does the cell activate fermentation, since fermentation allows faster ATP production per unit membrane area. Surface limitation thus creates a Pareto trade-off between membrane efficiency and ATP yield that links metabolic choice to the size and shape of a bacterial cell. By exploring the predictions that emerge from this trade-off, we show how consideration of molecular structures, energetics, rates, and equilibria can provide important insight into cellular behavior. Copyright © 2017 Elsevier Inc. All rights reserved.

New perspectives on the ecology of tree structure and tree communities through terrestrial laser scanning.

Science.gov (United States)

Malhi, Yadvinder; Jackson, Tobias; Patrick Bentley, Lisa; Lau, Alvaro; Shenkin, Alexander; Herold, Martin; Calders, Kim; Bartholomeus, Harm; Disney, Mathias I

2018-04-06

Terrestrial laser scanning (TLS) opens up the possibility of describing the three-dimensional structures of trees in natural environments with unprecedented detail and accuracy. It is already being extensively applied to describe how ecosystem biomass and structure vary between sites, but can also facilitate major advances in developing and testing mechanistic theories of tree form and forest structure, thereby enabling us to understand why trees and forests have the biomass and three-dimensional structure they do. Here we focus on the ecological challenges and benefits of understanding tree form, and highlight some advances related to capturing and describing tree shape that are becoming possible with the advent of TLS. We present examples of ongoing work that applies, or could potentially apply, new TLS measurements to better understand the constraints on optimization of tree form. Theories of resource distribution networks, such as metabolic scaling theory, can be tested and further refined. TLS can also provide new approaches to the scaling of woody surface area and crown area, and thereby better quantify the metabolism of trees. Finally, we demonstrate how we can develop a more mechanistic understanding of the effects of avoidance of wind risk on tree form and maximum size. Over the next few years, TLS promises to deliver both major empirical and conceptual advances in the quantitative understanding of trees and tree-dominated ecosystems, leading to advances in understanding the ecology of why trees and ecosystems look and grow the way they do.

Climate, Tree Growth, Forest Drought Stress, and Tree Mortality in Forests of Western North America: Long-Term Patterns and Recent Trends

Science.gov (United States)

Allen, C. D.; Williams, P.

2012-12-01

Ongoing climate changes are increasingly affecting the world's forests, particularly including high latitude and high elevation coniferous forests. Although forest growth has improved in some regions due to greater growing season length and warmth (perhaps along with increased atmospheric CO2 or N), large growth declines or increased mortality from droughts or hotter temperatures also are being observed. We present and interpret information on regional variation in climate-tree growth relationships and trends, and on patterns and trends of climate-related forest disturbances, from western North America. From 235 tree-ring chronologies in the Southwest US we show that tree-ring growth records from warmer southwestern sites are more sensitive to temperature than tree-ring growth records from cooler southwestern sites. Assessment of 59 tree-ring records from 11 species in the Cascade Mountains of the Pacific Northwest shows that trees growing in cool places respond positively to increased temperature and trees in warm places respond negatively, implying that trees historically not sensitive to temperature may become sensitive as mean temperatures warm. An analysis of 59 white spruce populations in Alaska supports the hypothesis that warming has caused tree growth to lose sensitivity to cold temperatures. Comparing ring widths to temperature during just the coldest 50% of years during the 20th century, tree growth was sensitive to cold temperatures, and this effect was strongest at the coldest sites; whereas during the warmest 50% of years, trees were not at all sensitive to cold temperatures, even at the cold sites. Drought and vapor pressure deficit are among the variables that emerge as being increasingly important to these Alaska boreal forests as mean temperatures rise. Most recently, from 346 tree-ring chronologies in the Southwest US we establish a tree-ring-based Forest Drought Stress Index (FDSI) for the three most widespread conifer species (Pinus edulis

EVFDT: An Enhanced Very Fast Decision Tree Algorithm for Detecting Distributed Denial of Service Attack in Cloud-Assisted Wireless Body Area Network

Directory of Open Access Journals (Sweden)

Rabia Latif

2015-01-01

Full Text Available Due to the scattered nature of DDoS attacks and advancement of new technologies such as cloud-assisted WBAN, it becomes challenging to detect malicious activities by relying on conventional security mechanisms. The detection of such attacks demands an adaptive and incremental learning classifier capable of accurate decision making with less computation. Hence, the DDoS attack detection using existing machine learning techniques requires full data set to be stored in the memory and are not appropriate for real-time network traffic. To overcome these shortcomings, Very Fast Decision Tree (VFDT algorithm has been proposed in the past that can handle high speed streaming data efficiently. Whilst considering the data generated by WBAN sensors, noise is an obvious aspect that severely affects the accuracy and increases false alarms. In this paper, an enhanced VFDT (EVFDT is proposed to efficiently detect the occurrence of DDoS attack in cloud-assisted WBAN. EVFDT uses an adaptive tie-breaking threshold for node splitting. To resolve the tree size expansion under extreme noise, a lightweight iterative pruning technique is proposed. To analyze the performance of EVFDT, four metrics are evaluated: classification accuracy, tree size, time, and memory. Simulation results show that EVFDT attains significantly high detection accuracy with fewer false alarms.

Rule-based detection of intrathoracic airway trees

International Nuclear Information System (INIS)

Sonka, M.; Park, W.; Hoffman, E.A.

1996-01-01

New sensitive and reliable methods for assessing alterations in regional lung structure and function are critically important for the investigation and treatment of pulmonary diseases. Accurate identification of the airway tree will provide an assessment of airway structure and will provide a means by which multiple volumetric images of the lung at the same lung volume over time can be used to assess regional parenchymal changes. The authors describe a novel rule-based method for the segmentation of airway trees from three-dimensional (3-D) sets of computed tomography (CT) images, and its validation. The presented method takes advantage of a priori anatomical knowledge about pulmonary airway and vascular trees and their interrelationships. The method is based on a combination of 3-D seeded region growing that is used to identify large airways, rule-based two-dimensional (2-D) segmentation of individual CT slices to identify probable locations of smaller diameter airways, and merging of airway regions across the 3-D set of slices resulting in a tree-like airway structure. The method was validated in 40 3-mm-thick CT sections from five data sets of canine lungs scanned via electron beam CT in vivo with lung volume held at a constant pressure. The method's performance was compared with that of the conventional 3-D region growing method. The method substantially outperformed an existing conventional approach to airway tree detection

Nonlinearities, scale-dependence, and individualism of boreal forest trees to climate forcing

Science.gov (United States)

Wolken, J. M.; Mann, D. H.; Grant, T. A., III; Lloyd, A. H.; Hollingsworth, T. N.

2013-12-01

Our understanding of the climate-growth relationships of trees are complicated by the nonlinearity and variability of these responses through space and time. Furthermore, trees growing at the same site may exhibit opposing growth responses to climate, a phenomenon termed growth divergence. To date the majority of dendrochronological studies in Interior Alaska have involved white spruce growing at treeline, even though black spruce is the most abundant tree species. Although changing climate-growth relationships have been observed in black spruce, there is little known about the multivariate responses of individual trees to temperature and precipitation and whether or not black spruce exhibits growth divergences similar to those documented for white spruce. To evaluate the occurrence of growth divergences in black spruce, we collected cores from trees growing on a steep, north-facing toposequence having a gradient in environmental parameters. Our overall goal was to assess how the climate-growth relationships of black spruce change over space and time. Specifically, we evaluated how topography influences the climate-growth relationships of black spruce and if the growth responses to climate are homogeneous. At the site-level most trees responded negatively to temperature and positively to precipitation, while at the tree-level black spruce exhibited heterogenous growth responses to climate that varied in both space (i.e., between sites) and time (i.e., seasonally and annually). There was a dominant response-type at each site, but there was also considerable variability in the proportion of trees exhibiting each response-type combination. Even in a climatically extreme setting like Alaska's boreal forest, tree responses to climate variability are spatially and temporally complex, as well as highly nonlinear.

Fast growing penis ulcer: an unusual coincidence.

Science.gov (United States)

Brunasso, Alexandra Maria Giovanna; Bandelloni, Roberto; Massone, Cesare

2012-07-01

A 57-year-old man was seen with a 2-week history of progressive enlargement of an asymptomatic genital ulcer associated with bilateral inguinal lymphadenomegaly. Multiple unprotected heterosexual contacts were reported. The family doctor misdiagnosed primary syphilis with the following laboratory results: negative findings on the Venereal Disease Research Laboratory test, positive findings on the Treponema pallidum particle agglutination assay (titer 1:1280), and IgM negative on the Treponema pallidum particle agglutination assay. The patient was treated with penicillin G for the diagnosis of indeterminate latent syphilis and initially denied authorization for a skin biopsy. After 2 weeks, fast enlargement of the lesion was documented. He underwent skin biopsy, and the histopathologic examination revealed squamous cell carcinoma, and polymerase chain reaction for human papillomavirus 16 was positive. Copyright © 2012 Elsevier Inc. All rights reserved.

Tree species migration studies in the White Mountains of New Hampshire

Science.gov (United States)

William B. Leak; Mariko. Yamasaki

2012-01-01

The movement of tree species in either latitude or elevation has attracted increased recent attention due to growing national/international concerns over climate change. However, studies on tree species movements began in the early 1970s in the White Mountains of New Hampshire, mostly due to ecological interests in the episodic behavior of upper-elevation tree species...

Metabolic and hormonal responses of growing modern meat type chickens to fasting

Science.gov (United States)

The present study compared the effects of fasting on circulating concentrations of glucose, insulin and glucagon in male and female modern meat-type chickens (Ross 708) at three ages (19 d, 33 d and 47 d). Plasma concentrations of glucose were reduced by fasting with reductions of 24.9% (19-d-old),...

Predicting tree biomass growth in the temperate-boreal ecotone: is tree size, age, competition or climate response most important?

Science.gov (United States)

Foster, Jane R.; Finley, Andrew O.; D'Amato, Anthony W.; Bradford, John B.; Banerjee, Sudipto

2016-01-01

As global temperatures rise, variation in annual climate is also changing, with unknown consequences for forest biomes. Growing forests have the ability to capture atmospheric CO2and thereby slow rising CO2 concentrations. Forests’ ongoing ability to sequester C depends on how tree communities respond to changes in climate variation. Much of what we know about tree and forest response to climate variation comes from tree-ring records. Yet typical tree-ring datasets and models do not capture the diversity of climate responses that exist within and among trees and species. We address this issue using a model that estimates individual tree response to climate variables while accounting for variation in individuals’ size, age, competitive status, and spatially structured latent covariates. Our model allows for inference about variance within and among species. We quantify how variables influence aboveground biomass growth of individual trees from a representative sample of 15 northern or southern tree species growing in a transition zone between boreal and temperate biomes. Individual trees varied in their growth response to fluctuating mean annual temperature and summer moisture stress. The variation among individuals within a species was wider than mean differences among species. The effects of mean temperature and summer moisture stress interacted, such that warm years produced positive responses to summer moisture availability and cool years produced negative responses. As climate models project significant increases in annual temperatures, growth of species likeAcer saccharum, Quercus rubra, and Picea glauca will vary more in response to summer moisture stress than in the past. The magnitude of biomass growth variation in response to annual climate was 92–95% smaller than responses to tree size and age. This means that measuring or predicting the physical structure of current and future forests could tell us more about future C dynamics than growth

Predicting tree biomass growth in the temperate-boreal ecotone: Is tree size, age, competition, or climate response most important?

Science.gov (United States)

Foster, Jane R; Finley, Andrew O; D'Amato, Anthony W; Bradford, John B; Banerjee, Sudipto

2016-06-01

As global temperatures rise, variation in annual climate is also changing, with unknown consequences for forest biomes. Growing forests have the ability to capture atmospheric CO2 and thereby slow rising CO2 concentrations. Forests' ongoing ability to sequester C depends on how tree communities respond to changes in climate variation. Much of what we know about tree and forest response to climate variation comes from tree-ring records. Yet typical tree-ring datasets and models do not capture the diversity of climate responses that exist within and among trees and species. We address this issue using a model that estimates individual tree response to climate variables while accounting for variation in individuals' size, age, competitive status, and spatially structured latent covariates. Our model allows for inference about variance within and among species. We quantify how variables influence aboveground biomass growth of individual trees from a representative sample of 15 northern or southern tree species growing in a transition zone between boreal and temperate biomes. Individual trees varied in their growth response to fluctuating mean annual temperature and summer moisture stress. The variation among individuals within a species was wider than mean differences among species. The effects of mean temperature and summer moisture stress interacted, such that warm years produced positive responses to summer moisture availability and cool years produced negative responses. As climate models project significant increases in annual temperatures, growth of species like Acer saccharum, Quercus rubra, and Picea glauca will vary more in response to summer moisture stress than in the past. The magnitude of biomass growth variation in response to annual climate was 92-95% smaller than responses to tree size and age. This means that measuring or predicting the physical structure of current and future forests could tell us more about future C dynamics than growth responses

Deciphering structural and temporal interplays during the architectural development of mango trees.

Science.gov (United States)

Dambreville, Anaëlle; Lauri, Pierre-Éric; Trottier, Catherine; Guédon, Yann; Normand, Frédéric

2013-05-01

Plant architecture is commonly defined by the adjacency of organs within the structure and their properties. Few studies consider the effect of endogenous temporal factors, namely phenological factors, on the establishment of plant architecture. This study hypothesized that, in addition to the effect of environmental factors, the observed plant architecture results from both endogenous structural and temporal components, and their interplays. Mango tree, which is characterized by strong phenological asynchronisms within and between trees and by repeated vegetative and reproductive flushes during a growing cycle, was chosen as a plant model. During two consecutive growing cycles, this study described vegetative and reproductive development of 20 trees submitted to the same environmental conditions. Four mango cultivars were considered to assess possible cultivar-specific patterns. Integrative vegetative and reproductive development models incorporating generalized linear models as components were built. These models described the occurrence, intensity, and timing of vegetative and reproductive development at the growth unit scale. This study showed significant interplays between structural and temporal components of plant architectural development at two temporal scales. Within a growing cycle, earliness of bud burst was highly and positively related to earliness of vegetative development and flowering. Between growing cycles, flowering growth units delayed vegetative development compared to growth units that did not flower. These interplays explained how vegetative and reproductive phenological asynchronisms within and between trees were generated and maintained. It is suggested that causation networks involving structural and temporal components may give rise to contrasted tree architectures.

Genetic selection and improvement of hard wood tree species for fuelwood production on sodic soil with particular reference to Prosopis juliflora

Energy Technology Data Exchange (ETDEWEB)

Goel, V.L.; Behl, H.M. [National Botanical Research Inst., Lucknow (India). Dept. of Tree Biology

2001-07-01

This study is part of a research programme on selection and improvement of fast growing tree species suitable for wood fuel production on sodic wastelands (pH 8.6-10.5). Field trials of nine legumes (Acacia auriculiformis, A. nilotica, Albizia lebbeck, A. procera, Dalbergia sissoo, Leucaena leucocephala, Pongamia pinnata, Prosopis juliflora, Pithecellobium dulce) and three other tree species (Azadirachta indica, Eucalyptus tereticornis and Terminalai arjuna) were selected for this study. Prosopis juliflora was the most promising species in terms of its biomass productivity (68.7 t ha{sup -1}) and fuel value index (148.8) after 8-yr of growth. Acacia nilotica ranked second. Intra-specific variations were screened at provenance and individual tree level in order to improve fuelwood production potential of P. juliflora through selection and breeding. Successful populations (gene pools) and individuals (genotypes) were closed and conserved in clonal gardens to produce quality germplasm for plantations on sodic wastelands. Genetic testing, selection and multiplication of selected material are under progress. This will optimise gains in future afforestation programmes on sodic soils. (Author)

Fungus-Growing Termites Originated in African Rain Forest

DEFF Research Database (Denmark)

Aanen, Duur Kornelis; Eggleton, Paul

2005-01-01

are consumed (cf. [ [1] and [2] ]). Fungus-growing termites are found throughout the Old World tropics, in rain forests and savannas, but are ecologically dominant in savannas [ 3 ]. Here, we reconstruct the ancestral habitat and geographical origin of fungus-growing termites. We used a statistical model...... of habitat switching [ 4 ] repeated over all phylogenetic trees sampled in a Bayesian analysis of molecular data [ 5 ]. Our reconstructions provide strong evidence that termite agriculture originated in African rain forest and that the main radiation leading to the extant genera occurred there. Because...

Response of individual Douglas-fir trees to release.

Science.gov (United States)

Donald L. Reukema

1961-01-01

To evaluate effects of different degrees of release on individual Douglas-fir trees, a study was started in 1952 in a 41-year-old, site IV stand at the Wind River Experimental Forest. A remeasurement at the end of four growing seasons showed that dominants respond more quickly and positively to the removal of competing trees than codominants or intermediates. A second...

Fast admixture analysis and population tree estimation for SNP and NGS data

DEFF Research Database (Denmark)

Cheng, Jade Yu; Mailund, Thomas; Nielsen, Rasmus

2017-01-01

assumption for identifying ancestry components correctly and for inferring the correct tree. In most cases, ancestry components are inferred correctly, although sample sizes and times since admixture can influence the results. We show that the popular Gaussian approximation tends to perform poorly under......-calling associated with Next Generation Sequencing (NGS) data. We also present a new method for estimating population trees from ancestry components using a Gaussian approximation. Using coalescence simulations of diverging populations, we explore the adequacy of the STRUCTURE-style models and the Gaussian...... extreme divergence scenarios e.g. with very long branch lengths, but the topologies of the population trees are accurately inferred in all scenarios explored. The new methods are implemented together with appropriate visualization tools in the software package Ohana....

SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.

Science.gov (United States)

Liu, Kevin; Warnow, Tandy J; Holder, Mark T; Nelesen, Serita M; Yu, Jiaye; Stamatakis, Alexandros P; Linder, C Randal

2012-01-01

Highly accurate estimation of phylogenetic trees for large data sets is difficult, in part because multiple sequence alignments must be accurate for phylogeny estimation methods to be accurate. Coestimation of alignments and trees has been attempted but currently only SATé estimates reasonably accurate trees and alignments for large data sets in practical time frames (Liu K., Raghavan S., Nelesen S., Linder C.R., Warnow T. 2009b. Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees. Science. 324:1561-1564). Here, we present a modification to the original SATé algorithm that improves upon SATé (which we now call SATé-I) in terms of speed and of phylogenetic and alignment accuracy. SATé-II uses a different divide-and-conquer strategy than SATé-I and so produces smaller more closely related subsets than SATé-I; as a result, SATé-II produces more accurate alignments and trees, can analyze larger data sets, and runs more efficiently than SATé-I. Generally, SATé is a metamethod that takes an existing multiple sequence alignment method as an input parameter and boosts the quality of that alignment method. SATé-II-boosted alignment methods are significantly more accurate than their unboosted versions, and trees based upon these improved alignments are more accurate than trees based upon the original alignments. Because SATé-I used maximum likelihood (ML) methods that treat gaps as missing data to estimate trees and because we found a correlation between the quality of tree/alignment pairs and ML scores, we explored the degree to which SATé's performance depends on using ML with gaps treated as missing data to determine the best tree/alignment pair. We present two lines of evidence that using ML with gaps treated as missing data to optimize the alignment and tree produces very poor results. First, we show that the optimization problem where a set of unaligned DNA sequences is given and the output is the tree and alignment of

Innovation activity as a condition for growing companied to improve their competitiveness

Directory of Open Access Journals (Sweden)

V. A. Barinova

2015-01-01

Full Text Available This article was conducted to identify the impact of innovative and scientific activities on competitiveness of fast growing Russian companies. The authors demonstrated that the competitiveness of domestic companies depends on their expenditures on R&D and technological innovation, the costs of staff training and other factors. Dataset for the study is based on the national ranking of fast-growing high-tech companies «TechUp 2013».

A fast BDD algorithm for large coherent fault trees analysis

International Nuclear Information System (INIS)

Jung, Woo Sik; Han, Sang Hoon; Ha, Jaejoo

2004-01-01

Although a binary decision diagram (BDD) algorithm has been tried to solve large fault trees until quite recently, they are not efficiently solved in a short time since the size of a BDD structure exponentially increases according to the number of variables. Furthermore, the truncation of If-Then-Else (ITE) connectives by the probability or size limit and the subsuming to delete subsets could not be directly applied to the intermediate BDD structure under construction. This is the motivation for this work. This paper presents an efficient BDD algorithm for large coherent systems (coherent BDD algorithm) by which the truncation and subsuming could be performed in the progress of the construction of the BDD structure. A set of new formulae developed in this study for AND or OR operation between two ITE connectives of a coherent system makes it possible to delete subsets and truncate ITE connectives with a probability or size limit in the intermediate BDD structure under construction. By means of the truncation and subsuming in every step of the calculation, large fault trees for coherent systems (coherent fault trees) are efficiently solved in a short time using less memory. Furthermore, the coherent BDD algorithm from the aspect of the size of a BDD structure is much less sensitive to variable ordering than the conventional BDD algorithm

Application Research of Fault Tree Analysis in Grid Communication System Corrective Maintenance

Science.gov (United States)

Wang, Jian; Yang, Zhenwei; Kang, Mei

2018-01-01

This paper attempts to apply the fault tree analysis method to the corrective maintenance field of grid communication system. Through the establishment of the fault tree model of typical system and the engineering experience, the fault tree analysis theory is used to analyze the fault tree model, which contains the field of structural function, probability importance and so on. The results show that the fault tree analysis can realize fast positioning and well repairing of the system. Meanwhile, it finds that the analysis method of fault tree has some guiding significance to the reliability researching and upgrading f the system.

New Insights on Wood Dimensional Stability Influenced by Secondary Metabolites: The Case of a Fast-Growing Tropical Species Bagassa guianensis Aubl.

Directory of Open Access Journals (Sweden)

Julie Bossu

Full Text Available Challenging evaluation of tropical forest biodiversity requires the reporting of taxonomic diversity but also the systematic characterization of wood properties in order to discover new promising species for timber industry. Among wood properties, the dimensional stability is regarded as a major technological characteristic to validate whether a wood species is adapted to commercial uses. Cell structure and organization are known to influence the drying shrinkage making wood density and microfibrils angle markers of choice to predict wood dimensional stability. On the contrary the role of wood extractive content remains unclear. This work focuses on the fast-growing tropical species Bagassa guianensis and we report herein a correlation between heartwood drying shrinkage and extractive content. Chemical extractions and shrinkage experiments were performed on separate wood twin samples to better evaluate correctly how secondary metabolites influence the wood shrinkage behaviour. Extractive content were qualitatively and quantitatively analysed using HPLC and NMR spectroscopy. We found that B guianensis heartwood has a homogeneous low shrinkage along its radius that could not be explained only by its basic density. In fact the low drying shrinkage is correlated to the high extractive content and a corrected model to improve the prediction of wood dimensional stability is presented. Additionally NMR experiments conducted on sapwood and heartwood extracts demonstrate that secondary metabolites biosynthesis occurs in sapwood thus revealing B. guianensis as a Juglans-Type heartwood formation. This work demonstrates that B. guianensis, a fast-growing species associated with high durability and high dimensional stability, is a good candidate for lumber production and commercial purposes.

Olive tree-ring problematic dating: a comparative analysis on Santorini (Greece.

Directory of Open Access Journals (Sweden)

Paolo Cherubini

Full Text Available Olive trees are a classic component of Mediterranean environments and some of them are known historically to be very old. In order to evaluate the possibility to use olive tree-rings for dendrochronology, we examined by various methods the reliability of olive tree-rings identification. Dendrochronological analyses of olive trees growing on the Aegean island Santorini (Greece show that the determination of the number of tree-rings is impossible because of intra-annual wood density fluctuations, variability in tree-ring boundary structure, and restriction of its cambial activity to shifting sectors of the circumference, causing the tree-ring sequences along radii of the same cross section to differ.

Olive tree-ring problematic dating: a comparative analysis on Santorini (Greece).

Science.gov (United States)

Cherubini, Paolo; Humbel, Turi; Beeckman, Hans; Gärtner, Holger; Mannes, David; Pearson, Charlotte; Schoch, Werner; Tognetti, Roberto; Lev-Yadun, Simcha

2013-01-01

Olive trees are a classic component of Mediterranean environments and some of them are known historically to be very old. In order to evaluate the possibility to use olive tree-rings for dendrochronology, we examined by various methods the reliability of olive tree-rings identification. Dendrochronological analyses of olive trees growing on the Aegean island Santorini (Greece) show that the determination of the number of tree-rings is impossible because of intra-annual wood density fluctuations, variability in tree-ring boundary structure, and restriction of its cambial activity to shifting sectors of the circumference, causing the tree-ring sequences along radii of the same cross section to differ.

Analysis of electrical tree propagation in XLPE power cable insulation

International Nuclear Information System (INIS)

Bao Minghui; Yin Xiaogen; He Junjia

2011-01-01

Electrical treeing is one of the major breakdown mechanisms for solid dielectrics subjected to high electrical stress. In this paper, the characteristics of electrical tree growth in XLPE samples have been investigated. XLPE samples are obtained from a commercial XLPE power cable, in which electrical trees have been grown from pin to plane in the frequency range of 4000-10,000 Hz, voltage range of 4-10 kV, and the distances between electrodes of 1 and 2 mm. Images of trees and their growing processes were taken by a CCD camera. The fractal dimensions of electric trees were obtained by using a simple box-counting technique. The results show that the tree growth rate and fractal dimension was bigger when the frequency or voltage was higher, or the distance between electrodes was smaller. Contrary to our expectation, it has been found that when the distance between electrodes changed from 1 to 2 mm, the required voltage of the similar electrical trees decreased only 1or 2 kV. In order to evaluate the difficulties of electrical tree propagation in different conditions, a simple energy threshold analysis method has been proposed. The threshold energy, which presents the minimum energy that a charge carrier in the well at the top of the tree should have to make the tree grow, has been computed considering the length of electrical tree, the fractal dimension, and the growth time. The computed results indicate that when one of the three parameters of voltage, frequency, and local electric field increase, the trends of energy threshold can be split into 3 regions.

Vessel-guided airway tree segmentation

DEFF Research Database (Denmark)

Lo, Pechin Chien Pau; Sporring, Jon; Ashraf, Haseem

2010-01-01

This paper presents a method for airway tree segmentation that uses a combination of a trained airway appearance model, vessel and airway orientation information, and region growing. We propose a voxel classification approach for the appearance model, which uses a classifier that is trained to di...

Theoretical models for the regulation of DNA replication in fast-growing bacteria

Science.gov (United States)

Creutziger, Martin; Schmidt, Mischa; Lenz, Peter

2012-09-01

Growing in always changing environments, Escherichia coli cells are challenged by the task to coordinate growth and division. In particular, adaption of their growth program to the surrounding medium has to guarantee that the daughter cells obtain fully replicated chromosomes. Replication is therefore to be initiated at the right time, which is particularly challenging in media that support fast growth. Here, the mother cell initiates replication not only for the daughter but also for the granddaughter cells. This is possible only if replication occurs from several replication forks that all need to be correctly initiated. Despite considerable efforts during the last 40 years, regulation of this process is still unknown. Part of the difficulty arises from the fact that many details of the relevant molecular processes are not known. Here, we develop a novel theoretical strategy for dealing with this general problem: instead of analyzing a single model, we introduce a wide variety of 128 different models that make different assumptions about the unknown processes. By comparing the predictions of these models we are able to identify the key quantities that allow the experimental discrimination of the different models. Analysis of these quantities yields that out of the 128 models 94 are not consistent with available experimental data. From the remaining 34 models we are able to conclude that mass growth and DNA replication need either to be truly coupled, by coupling DNA replication initiation to the event of cell division, or to the amount of accumulated mass. Finally, we make suggestions for experiments to further reduce the number of possible regulation scenarios.

Characteristics of physical properties in soil profiles under selected introduced trees in the Nature Reserve Arboretum Mlyňany, Slovakia

Directory of Open Access Journals (Sweden)

Polláková Nora

2017-12-01

Full Text Available The relationship between introduced trees roots and soils in which they grow is the most important factor influencing the adaptation, growth and health of these trees. Therefore, the objective of this study was to identify which physical soil properties enhance or limit the vitality of the studied introduced trees in the Arboretum Mlyňany. Soil properties were studied in seven soil profiles under dense monocultures of Chamaecyparis lawsoniana, Liriodendron tulipifera, Juniperus Chinensis, Thuja orientalis, Thuja plicata, Picea orientalis and Pinus nigra. The results showed that all stagnic horizons had exceeded the limit values of total porosity and bulk density, hence these horizons were compacted. Based on the soil and climatic requirements of the examined trees we conclude that the soil properties of their sites in arboretum are suitable for: Chamaecyparis lawsoniana, Liriodendron tulipifera, Thuja orientalis and Pinus nigra. Nevertheless, physical properties in profiles under Picea orientalis and Juniperus Chinensis do not permit rapid drainage of water, what is unfavourable for healthy development of these two species; while Thuja plicata demanding high moisture supply is grown on soil with high coarse porosity, a prerequisite of fast rainwater drainage. However, since none of the studied introduced trees had suffered from physiological disorders or diseases, they may be declared acclimatized well in the soil-climate conditions described in this study.

Fast and Robust Segmentation and Classification for Change Detection in Urban Point Clouds

Science.gov (United States)

Roynard, X.; Deschaud, J.-E.; Goulette, F.

2016-06-01

Change detection is an important issue in city monitoring to analyse street furniture, road works, car parking, etc. For example, parking surveys are needed but are currently a laborious task involving sending operators in the streets to identify the changes in car locations. In this paper, we propose a method that performs a fast and robust segmentation and classification of urban point clouds, that can be used for change detection. We apply this method to detect the cars, as a particular object class, in order to perform parking surveys automatically. A recently proposed method already addresses the need for fast segmentation and classification of urban point clouds, using elevation images. The interest to work on images is that processing is much faster, proven and robust. However there may be a loss of information in complex 3D cases: for example when objects are one above the other, typically a car under a tree or a pedestrian under a balcony. In this paper we propose a method that retain the three-dimensional information while preserving fast computation times and improving segmentation and classification accuracy. It is based on fast region-growing using an octree, for the segmentation, and specific descriptors with Random-Forest for the classification. Experiments have been performed on large urban point clouds acquired by Mobile Laser Scanning. They show that the method is as fast as the state of the art, and that it gives more robust results in the complex 3D cases.

Random tree growth by vertex splitting

International Nuclear Information System (INIS)

David, F; Dukes, W M B; Jonsson, T; Stefánsson, S Ö

2009-01-01

We study a model of growing planar tree graphs where in each time step we separate the tree into two components by splitting a vertex and then connect the two pieces by inserting a new link between the daughter vertices. This model generalizes the preferential attachment model and Ford's α-model for phylogenetic trees. We develop a mean field theory for the vertex degree distribution, prove that the mean field theory is exact in some special cases and check that it agrees with numerical simulations in general. We calculate various correlation functions and show that the intrinsic Hausdorff dimension can vary from 1 to ∞, depending on the parameters of the model

A support vector machine based test for incongruence between sets of trees in tree space

Science.gov (United States)

2012-01-01

Background The increased use of multi-locus data sets for phylogenetic reconstruction has increased the need to determine whether a set of gene trees significantly deviate from the phylogenetic patterns of other genes. Such unusual gene trees may have been influenced by other evolutionary processes such as selection, gene duplication, or horizontal gene transfer. Results Motivated by this problem we propose a nonparametric goodness-of-fit test for two empirical distributions of gene trees, and we developed the software GeneOut to estimate a p-value for the test. Our approach maps trees into a multi-dimensional vector space and then applies support vector machines (SVMs) to measure the separation between two sets of pre-defined trees. We use a permutation test to assess the significance of the SVM separation. To demonstrate the performance of GeneOut, we applied it to the comparison of gene trees simulated within different species trees across a range of species tree depths. Applied directly to sets of simulated gene trees with large sample sizes, GeneOut was able to detect very small differences between two set of gene trees generated under different species trees. Our statistical test can also include tree reconstruction into its test framework through a variety of phylogenetic optimality criteria. When applied to DNA sequence data simulated from different sets of gene trees, results in the form of receiver operating characteristic (ROC) curves indicated that GeneOut performed well in the detection of differences between sets of trees with different distributions in a multi-dimensional space. Furthermore, it controlled false positive and false negative rates very well, indicating a high degree of accuracy. Conclusions The non-parametric nature of our statistical test provides fast and efficient analyses, and makes it an applicable test for any scenario where evolutionary or other factors can lead to trees with different multi-dimensional distributions. The

Planting Trees for Publicity—How Much Are They Worth?

Directory of Open Access Journals (Sweden)

Joanna Mieszkowicz

2011-07-01

Full Text Available Corporate marketing departments use trees and forests for advertising and public relations (PR. Trees and forests constitute a tangible symbol of the environment, reinforced by the growing awareness of the role that trees play in preventing climate change. Although the carbon sequestration function of trees is valued in monetary terms, its derivative services to marketing, CSR or HR departments are not (‘greening the image’. We focus on voluntary carbon offsets and other tree-planting activities undertaken by companies, aiming to demonstrate that the value of these derivative services of trees should be considered in monetary terms. Based on a small survey and an analysis of financial data for 10 tree-planting projects in Poland, we estimate this value at USD 7.42 per tree. This value depends on external circumstances, such as the current interest in climate change and ways to prevent it.

Fast Structural Search in Phylogenetic Databases

Directory of Open Access Journals (Sweden)

William H. Piel

2005-01-01

Full Text Available As the size of phylogenetic databases grows, the need for efficiently searching these databases arises. Thanks to previous and ongoing research, searching by attribute value and by text has become commonplace in these databases. However, searching by topological or physical structure, especially for large databases and especially for approximate matches, is still an art. We propose structural search techniques that, given a query or pattern tree P and a database of phylogenies D, find trees in D that are sufficiently close to P . The “closeness” is a measure of the topological relationships in P that are found to be the same or similar in a tree D in D. We develop a filtering technique that accelerates searches and present algorithms for rooted and unrooted trees where the trees can be weighted or unweighted. Experimental results on comparing the similarity measure with existing tree metrics and on evaluating the efficiency of the search techniques demonstrate that the proposed approach is promising

Learning from our mistakes: minimizing problems with invasive biofuel plants

CSIR Research Space (South Africa)

Richardson, DM

2011-03-01

Full Text Available -legume service trees (e.g., Cecropia spp.); 168  Fast-growing timber trees (e.g., Eucalyptus spp., Casuarina spp.); 169  High-value timber trees (e.g., Cedrela odorata, Cordia alliodora); 170  Fruit trees (e.g., Citrus spp., Psidium guajava). 171 172...

The longevity of broadleaf deciduous trees in Northern Hemisphere temperate forests: insights from tree-ring series

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Alfredo eDi Filippo

2015-05-01

Full Text Available Understanding the factors controlling the expression of longevity in trees is still an outstanding challenge for tree biologists and forest ecologists. We gathered tree-ring data and literature for broadleaf deciduous (BD temperate trees growing in closed-canopy old-growth forests in the Northern Hemisphere to explore the role of geographic patterns, climate variability, and growth rates on longevity. Our pan-continental analysis, covering 32 species from 12 genera, showed that 300-400 years can be considered a baseline threshold for maximum tree lifespan in many temperate deciduous forests. Maximum age varies greatly in relation to environmental features, even within the same species. Tree longevity is generally promoted by reduced growth rates across large genetic differences and environmental gradients. We argue that slower growth rates, and the associated smaller size, provide trees with an advantage against biotic and abiotic disturbance agents, supporting the idea that size, not age, is the main constraint to tree longevity. The oldest trees were living most of their life in subordinate canopy conditions and/or within primary forests in cool temperate environments and outside major storm tracks. Very old trees are thus characterized by slow growth and often live in forests with harsh site conditions and infrequent disturbance events that kill much of the trees. Temperature inversely controls the expression of longevity in mesophilous species (Fagus spp., but its role in Quercus spp. is more complex and warrants further research in disturbance ecology. Biological, ecological and historical drivers must be considered to understand the constraints imposed to longevity within different forest landscapes.

Stem cracks and decay in Newtonia buchananii trees in the ...

African Journals Online (AJOL)

Stem cracks, decay and bark pattern in Newtonia buchananii trees were investigated and compared in a submontane rain forest in the Mazumbai Forest Reserve and adjacent human disturbed forest. One third of the trees growing in the reserve (32 %) and more than half of those in the disturbed forest (60 %) had stem ...

An innovative apparatus provided with a cutting auger for producing short logs for biomass energy from fast-growing tree species

Energy Technology Data Exchange (ETDEWEB)

Colorio, G.; Tomasone, R.; Cedrola, C.; Pagano, M.; Pochi, D.; Fanigliulo, R.; Sperandio, G. [Council for Research in Agriculture, Agricultural Engineering Research Unit, Rome (Italy)

2010-07-01

This paper reported on a new cutting mechanism that cuts fresh wood into small pieces instead of wood chips in order to avoid the problem of fermentation that occurs in storage. The prototype cutting device performs a gradual and oblique cut. It consists of a large auger in which a knife is inserted on the outer edge of the helicoid. Tree trunks up to 20 cm in diameter are fed perpendicularly into the machine and are pushed along the axis where slices are cut off against a fixed sharp-edged counter blade. The cylinder enclosing the auger is the main frame of the machine, and is closed at one end, where a heavy flywheel delivers the energy coming from the tractor's power take-off (PTO). The wood pieces ranging in length from 4 to 19 cm exit through the opposite end. The auger is 700 mm in diameter with a 300 mm pitch spacing. The logs are pushed into the machine by counter-rotating rollers placed in the feed funnel. Tests were conducted to determine the operative performance and power requirements of the machine. The cutting method requires less power compared to wood chipping machines. Work capacity is greater when producing slices instead of chips and the system produces less noise and fewer vibrations. The auger reaches a constant velocity of 200 RPM and can easily cut fresh wood of different species.

The Building Blocks of Life Move from Ground to Tree to Animal and Back to Ground

Science.gov (United States)

Davidson, E. A.

2015-12-01

I generally use combinations of big words to describe my science, such as biogeochemistry, ecosystem ecology, nutrient cycling, stoichiometry, tropical deforestation, land-use change, agricultural intensification, eutrophication, greenhouse gas emissions, and sustainable development. I didn't expect to use any of these words, but I was surprised that I couldn't use some others that seem simple enough to me, such as farm, plant, soil, and forest. I landed on "building blocks" as my metaphor for the forms of carbon, nitrogen, phosphorus, and other elements that I study as they cycle through and among ecosystems. I study what makes trees and other kinds of life grow. We all know that they need the sun and that they take up water from the ground, but what else do trees need from the ground? What do animals that eat leaves and wood get from the trees? Just as we need building blocks to grow our bodies, trees and animals also need building blocks for growing their bodies. Trees get part of their building blocks from the ground and animals get theirs from what they eat. When animals poop and when leaves fall, some of their building blocks return to the ground. When they die, their building blocks also go back to the ground. I also study what happens to the ground, the water, and the air when we cut down trees, kill or shoo away the animals, and make fields to grow our food. Can we grow enough food and still keep the ground, water, and air clean? I think the answer is yes, but it will take better understanding of how all of those building blocks fit together and move around, from ground to tree to animal and back to ground.

Frost monitoring of fruit tree with satellite data

Science.gov (United States)

Fan, Jinlong; Zhang, Mingwei; Cao, Guangzheng; Zhang, Xiaoyu; Liu, Chenchen; Niu, Xinzan; Xu, Wengbo

2012-09-01

The orchards are developing very fast in the northern China in recent years with the increasing demands on fruits in China. In most parts of the northern China, the risk of frost damage to fruit tree in early spring is potentially high under the background of global warming. The growing season comes earlier than it does in normal year due to the warm weather in earlier spring and the risk will be higher in this case. According to the reports, frost event in spring happens almost every year in Ningxia Region, China. In bad cases, late frosts in spring can be devastating all fruit. So lots of attention has been given to the study in monitoring, evaluating, preventing and mitigating frost. Two orchards in Ningxia, Taole and Jiaozishan orchards were selected as the study areas. MODIS data were used to monitor frost events in combination with minimum air temperature recorded at weather station. The paper presents the findings. The very good correlation was found between MODIS LST and minimum air temperature in Ningxia. Light, middle and severe frosts were captured in the study area by MODIS LST. The MODIS LST shows the spatial differences of temperature in the orchards. 10 frost events in April from 2000 to 2010 were captured by the satellite data. The monitoring information may be hours ahead circulated to the fruit farmers to prevent the damage and loss of fruit trees.

Two tree-formation methods for fast pattern search using nearest-neighbour and nearest-centroid matching

NARCIS (Netherlands)

Schomaker, Lambertus; Mangalagiu, D.; Vuurpijl, Louis; Weinfeld, M.; Schomaker, Lambert; Vuurpijl, Louis

2000-01-01

This paper describes tree­based classification of character images, comparing two methods of tree formation and two methods of matching: nearest neighbor and nearest centroid. The first method, Preprocess Using Relative Distances (PURD) is a tree­based reorganization of a flat list of patterns,

Objective Provision Trees of Reactivity Control Safety Function for Sodium-Cooled Fast Reactor

Energy Technology Data Exchange (ETDEWEB)

Kang, Bongsuk; Yang, Huichang [TUEV Rheinland Korea Ltd., Seoul (Korea, Republic of); Suh, Namduk [Korea Institute of Nuclear Safety, Daejeon (Korea, Republic of)

2014-05-15

The purpose of this OPT is first to assure the DiD design during the licensing of Sf, but it will also contribute in evaluating the completeness of regulatory requirements under development by Korea Institute of Nuclear Safety (KINS). Based on the definition of Defense-in-Depth (DiD) levels and safety functions for KALIMER Sodium-Cooled Fast Reactor (SFR), suggested in the reference and, Objective Provision Trees (OPTs) of reactivity control function for level 1, 2, 3 and 4 DiD were developed and suggested in this paper. The challenges and mechanisms and provisions were briefly explained in this paper. Comparing the mechanisms and provisions with the requirements will contribute in identifying the missing requirements. Since the design of Prototype Gen-IV Sf (PGSFR) is not mature yet, the OPT is developed for KALIMER design. Developed level 1 to 4 OPTs in this study can be used for the identification of potential design vulnerabilities. When detailed identification of provisions in terms of design features were achieved through the next step of this study, it can contribute to the establishment of defense-in-depth evaluation frame for the regulatory reviews for the licensing process. In the next stage of this study, other safety function will be researched and findings can be suggested as recommendations for the safety improvement.

Objective Provision Trees of Reactivity Control Safety Function for Sodium-Cooled Fast Reactor

International Nuclear Information System (INIS)

Kang, Bongsuk; Yang, Huichang; Suh, Namduk

2014-01-01

The purpose of this OPT is first to assure the DiD design during the licensing of Sf, but it will also contribute in evaluating the completeness of regulatory requirements under development by Korea Institute of Nuclear Safety (KINS). Based on the definition of Defense-in-Depth (DiD) levels and safety functions for KALIMER Sodium-Cooled Fast Reactor (SFR), suggested in the reference and, Objective Provision Trees (OPTs) of reactivity control function for level 1, 2, 3 and 4 DiD were developed and suggested in this paper. The challenges and mechanisms and provisions were briefly explained in this paper. Comparing the mechanisms and provisions with the requirements will contribute in identifying the missing requirements. Since the design of Prototype Gen-IV Sf (PGSFR) is not mature yet, the OPT is developed for KALIMER design. Developed level 1 to 4 OPTs in this study can be used for the identification of potential design vulnerabilities. When detailed identification of provisions in terms of design features were achieved through the next step of this study, it can contribute to the establishment of defense-in-depth evaluation frame for the regulatory reviews for the licensing process. In the next stage of this study, other safety function will be researched and findings can be suggested as recommendations for the safety improvement

A fast improved fat tree encoder for wave union TDC in an FPGA

International Nuclear Information System (INIS)

Shen Qi; Zhao Lei; Liu Shubin; Qi Binxiang; Hu Xueye; An Qi; Liao Shengkai; Peng Chengzhi

2013-01-01

Up to now, the wave union method can achieve the best timing performance in FPGA-based TDC designs. However, it should be guaranteed in such a structure that the non-thermometer code to binary code (NTH2B) encoding process should be finished within just one system clock cycle. So the implementation of the NTH2B encoder is quite challenging considering the high speed requirement. Besides, the high resolution wave union TDC also demands that the encoder convert an ultra-wide input code to a binary code. We present a fast improved fat tree encoder (IFTE) to fulfill such requirements, in which bubble error suppression is also integrated. With this encoder scheme, a wave union TDC with 7.7 ps RMS and 3.8 ps effective bin size was implemented in an FPGA from Xilinx Virtex 5 family. An encoding time of 8.33 ns was achieved for a 276-bit non-thermometer code to a 9-bit binary code conversion. We conducted a series of tests on the oscillating period of the wave union launcher, as well as the overall performance of the TDC; test results indicate that the IFTE works well. In fact, in the implementation of this encoder, no manual routing or special constraints were required; therefore, this IFTE structure could also be further applied in other delay-chain-based FPGA TDCs. (authors)

I Have a Banana Tree in My Classroom

Science.gov (United States)

Williams, Patricia A.

2007-01-01

When the banana is growing, the broadest part of the banana is located at the bottom, while the tapered end points upward. It appears upside down, however, from the banana tree's perspective, it is growing right side up. The author observes that the students in her classroom labeled by society as "at risk," are also, in a sense, "upside down."…

Methanol and isoprene emissions from the fast growing tropical pioneer species Vismia guianensis (Aubl. Pers. (Hypericaceae in the central Amazon forest

Directory of Open Access Journals (Sweden)

K. J. Jardine

2016-05-01

Full Text Available Isoprene (Is emissions by plants represent a loss of carbon and energy resources leading to the initial hypothesis that fast growing pioneer species in secondary tropical forests allocate carbon primarily to growth at the expense of isoprenoid defenses. In this study, we quantified leaf isoprene and methanol emissions from the abundant pantropical pioneer tree species Vismia guianensis and ambient isoprene concentrations above a diverse secondary forest in the central Amazon. As photosynthetically active radiation (PAR was varied (0 to 3000 µmol m−2 s−1 under standard leaf temperature (30 °C, isoprene emissions from V. guianensis increased without saturation up to 80 nmol m−2 s−1. A nonlinear increase in isoprene emissions with respect to net photosynthesis (Pn resulted in the fraction of Pn dedicated to isoprene emissions increasing with light intensity (up to 2 % of Pn. Emission responses to temperature under standard light conditions (PAR of 1000 µmol m−2 s−1 resulted in the classic uncoupling of isoprene emissions (Topt, iso > 40 °C from net photosynthesis (Topt, Pn = 30.0–32.5 °C with up to 7 % of Pn emitted as isoprene at 40 °C. Under standard environmental conditions of PAR and leaf temperature, young V. guianensis leaves showed high methanol emissions, low Pn, and low isoprene emissions. In contrast, mature leaves showed high Pn, high isoprene emissions, and low methanol emissions, highlighting the differential control of leaf phenology over methanol and isoprene emissions. High daytime ambient isoprene concentrations (11 ppbv were observed above a secondary Amazon rainforest, suggesting that isoprene emissions are common among neotropical pioneer species. The results are not consistent with the initial hypothesis and support a functional role of methanol during leaf expansion and the establishment of photosynthetic machinery and a protective role of isoprene for

Nutrient cycling and Above- and Below-ground Interactions in a Runoff Agroforestry System Applied with Composted Tree Trimmings

Science.gov (United States)

Ilani, Talli; Ephrath, Jhonathan; Silberbush, Moshe; Berliner, Pedro

2014-05-01

The primary production in arid zones is limited due to shortage of water and nutrients. Conveying flood water and storing it in plots surrounded by embankments allows their cropping. The efficient exploitation of the stored water can be achieved through an agroforestry system, in which two crops are grown simultaneously: annual crops with a shallow root system and trees with a deeper root system. We posit that the long-term productivity of this system can be maintained by intercropping symbiotic N fixing shrubs with annual crops, and applying the pruned and composted shrub leaves to the soil, thus ensuring an adequate nitrogen level (a limiting factor in drylands) in the soil. To test our hypothesis we carried a two year trial in which fast-growing acacia (A. saligna) trees were the woody component and maize (Zea mays L.) the intercrop. Ten treatments were applied over two maize growth seasons to examine the below- and above-ground effects of tree pruning, compost application and interactions. The addition of compost in the first growth season led to an increase of the soil organic matter reservoir, which was the main N source for the maize during the following growth season. In the second growth season the maize yield was significantly higher in the plots to which compost was applied. Pruning the tree's canopies changed the trees spatial and temporal root development, allowing the annual crop to develop between the trees. The roots of pruned trees intercropped with maize penetrated deeper in the soil. The intercropping of maize within pruned trees and implementing compost resulted in a higher water use efficiency of the water stored in the soil when compared to the not composted and monoculture treatments. The results presented suggest that the approach used in this study can be the basis for achieving sustainable agricultural production under arid conditions.

Host tree phenology affects vascular epiphytes at the physiological, demographic and community level

Science.gov (United States)

Einzmann, Helena J. R.; Beyschlag, Joachim; Hofhansl, Florian; Wanek, Wolfgang; Zotz, Gerhard

2015-01-01

The processes that govern diverse tropical plant communities have rarely been studied in life forms other than trees. Structurally dependent vascular epiphytes, a major part of tropical biodiversity, grow in a three-dimensional matrix defined by their hosts, but trees differ in their architecture, bark structure/chemistry and leaf phenology. We hypothesized that the resulting seasonal differences in microclimatic conditions in evergreen vs. deciduous trees would affect epiphytes at different levels, from organ physiology to community structure. We studied the influence of tree leaf phenology on vascular epiphytes on the Island of Barro Colorado, Panama. Five tree species were selected, which were deciduous, semi-deciduous or evergreen. The crowns of drought-deciduous trees, characterized by sunnier and drier microclimates, hosted fewer individuals and less diverse epiphyte assemblages. Differences were also observed at a functional level, e.g. epiphyte assemblages in deciduous trees had larger proportions of Crassulacean acid metabolism species and individuals. At the population level a drier microclimate was associated with lower individual growth and survival in a xerophytic fern. Some species also showed, as expected, lower specific leaf area and higher δ13C values when growing in deciduous trees compared with evergreen trees. As hypothesized, host tree leaf phenology influences vascular epiphytes at different levels. Our results suggest a cascading effect of tree composition and associated differences in tree phenology on the diversity and functioning of epiphyte communities in tropical lowland forests. PMID:25392188

Heavy metal accumulation in trees growing on contaminated sites in Central Europe

International Nuclear Information System (INIS)

Unterbrunner, R.; Puschenreiter, M.; Sommer, P.; Wieshammer, G.; Tlustos, P.; Zupan, M.; Wenzel, W.W.

2007-01-01

Metal-accumulating woody species have been considered for phytoextraction of metal-contaminated sites. We investigated Zn and Cd accumulation in tissues of adult trees and associated herbaceous species collected from contaminated areas in Central Europe. We found considerable Cd and Zn accumulation in various willow, poplar and birch species with up to 116 mg Cd kg -1 and 4680 mg Zn kg -1 in leaves of Salix caprea. Annual variation of Cd and Zn concentrations in leaves of Salix caprea were small, indicating that data obtained in different years can be compared. Metal concentrations in leaves were not related to total (aqua regia) or labile (1 M NH 4 NO 3 extract) concentrations in soil but the accumulation factors (leaf concentration: soil concentration) for Cd and Zn followed an inverse log type function. Metal partitioning between tissues showed a minimum in the wood, with increasing concentrations of Cd and Zn towards the leaves and fine roots. - Adult field-grown Salix caprea, Populus tremula and other tree species accumulate up to 4680 mg Zn kg -1 and 116 mg Cd kg -1 in their leaves

Heavy metal accumulation in trees growing on contaminated sites in Central Europe

Energy Technology Data Exchange (ETDEWEB)

Unterbrunner, R. [University of Natural Resources and Applied Life Sciences, Vienna - BOKU, Department of Forest and Soil Sciences, Peter Jordan Strasse 82, A-1190 Vienna (Austria); Puschenreiter, M. [University of Natural Resources and Applied Life Sciences, Vienna - BOKU, Department of Forest and Soil Sciences, Peter Jordan Strasse 82, A-1190 Vienna (Austria)]. E-mail: markus.puschenreiter@boku.ac.at; Sommer, P. [University of Natural Resources and Applied Life Sciences, Vienna - BOKU, Department of Forest and Soil Sciences, Peter Jordan Strasse 82, A-1190 Vienna (Austria); Wieshammer, G. [University of Natural Resources and Applied Life Sciences, Vienna - BOKU, Department of Forest and Soil Sciences, Peter Jordan Strasse 82, A-1190 Vienna (Austria); Tlustos, P. [Czech University of Agriculture Prague, 165 21 Praha 6-Suchdol (Czech Republic); Zupan, M. [University of Ljubljana, Biotechnical Faculty, Agronomy department, Jamnikarjeva 101, 1000 Ljubljana (Slovenia); Wenzel, W.W. [University of Natural Resources and Applied Life Sciences, Vienna - BOKU, Department of Forest and Soil Sciences, Peter Jordan Strasse 82, A-1190 Vienna (Austria)

2007-07-15

Metal-accumulating woody species have been considered for phytoextraction of metal-contaminated sites. We investigated Zn and Cd accumulation in tissues of adult trees and associated herbaceous species collected from contaminated areas in Central Europe. We found considerable Cd and Zn accumulation in various willow, poplar and birch species with up to 116 mg Cd kg{sup -1} and 4680 mg Zn kg{sup -1} in leaves of Salix caprea. Annual variation of Cd and Zn concentrations in leaves of Salix caprea were small, indicating that data obtained in different years can be compared. Metal concentrations in leaves were not related to total (aqua regia) or labile (1 M NH{sub 4}NO{sub 3} extract) concentrations in soil but the accumulation factors (leaf concentration: soil concentration) for Cd and Zn followed an inverse log type function. Metal partitioning between tissues showed a minimum in the wood, with increasing concentrations of Cd and Zn towards the leaves and fine roots. - Adult field-grown Salix caprea, Populus tremula and other tree species accumulate up to 4680 mg Zn kg{sup -1} and 116 mg Cd kg{sup -1} in their leaves.

A fast algorithm for identifying friends-of-friends halos

Science.gov (United States)

Feng, Y.; Modi, C.

2017-07-01

We describe a simple and fast algorithm for identifying friends-of-friends features and prove its correctness. The algorithm avoids unnecessary expensive neighbor queries, uses minimal memory overhead, and rejects slowdown in high over-density regions. We define our algorithm formally based on pair enumeration, a problem that has been heavily studied in fast 2-point correlation codes and our reference implementation employs a dual KD-tree correlation function code. We construct features in a hierarchical tree structure, and use a splay operation to reduce the average cost of identifying the root of a feature from O [ log L ] to O [ 1 ] (L is the size of a feature) without additional memory costs. This reduces the overall time complexity of merging trees from O [ L log L ] to O [ L ] , reducing the number of operations per splay by orders of magnitude. We next introduce a pruning operation that skips merge operations between two fully self-connected KD-tree nodes. This improves the robustness of the algorithm, reducing the number of merge operations in high density peaks from O [δ2 ] to O [ δ ] . We show that for cosmological data set the algorithm eliminates more than half of merge operations for typically used linking lengths b ∼ 0 . 2 (relative to mean separation). Furthermore, our algorithm is extremely simple and easy to implement on top of an existing pair enumeration code, reusing the optimization effort that has been invested in fast correlation function codes.

Visualizing phylogenetic tree landscapes.

Science.gov (United States)

Wilgenbusch, James C; Huang, Wen; Gallivan, Kyle A

2017-02-02

Genomic-scale sequence alignments are increasingly used to infer phylogenies in order to better understand the processes and patterns of evolution. Different partitions within these new alignments (e.g., genes, codon positions, and structural features) often favor hundreds if not thousands of competing phylogenies. Summarizing and comparing phylogenies obtained from multi-source data sets using current consensus tree methods discards valuable information and can disguise potential methodological problems. Discovery of efficient and accurate dimensionality reduction methods used to display at once in 2- or 3- dimensions the relationship among these competing phylogenies will help practitioners diagnose the limits of current evolutionary models and potential problems with phylogenetic reconstruction methods when analyzing large multi-source data sets. We introduce several dimensionality reduction methods to visualize in 2- and 3-dimensions the relationship among competing phylogenies obtained from gene partitions found in three mid- to large-size mitochondrial genome alignments. We test the performance of these dimensionality reduction methods by applying several goodness-of-fit measures. The intrinsic dimensionality of each data set is also estimated to determine whether projections in 2- and 3-dimensions can be expected to reveal meaningful relationships among trees from different data partitions. Several new approaches to aid in the comparison of different phylogenetic landscapes are presented. Curvilinear Components Analysis (CCA) and a stochastic gradient decent (SGD) optimization method give the best representation of the original tree-to-tree distance matrix for each of the three- mitochondrial genome alignments and greatly outperformed the method currently used to visualize tree landscapes. The CCA + SGD method converged at least as fast as previously applied methods for visualizing tree landscapes. We demonstrate for all three mtDNA alignments that 3D

Timing and duration of European larch growing season along altitudinal gradients in the Swiss Alps.

Science.gov (United States)

Moser, Lea; Fonti, Patrick; Büntgen, Ulf; Esper, Jan; Luterbacher, Jürg; Franzen, Julia; Frank, David

2010-02-01

The 2007 European larch (Larix decidua Mill.) growing season was monitored along two elevational transects in the Lötschental valley in the Swiss Alps. Phenological observations and weekly microcore sampling of 28 larch trees were conducted between April and October 2007 at seven study sites regularly spaced from 1350 to 2150 m a.s.l. on northwest- and southeast-facing slopes. The developmental stages of nearly 75,000 individual cells assessed on 1200 thin sections were used to investigate the links between the trees' thermal regimes and growth phases including the beginning and ending of cell enlargement, wall thickening and maturation of the stem wood. Needles appeared approximately 3-4 weeks earlier than stem growth. The duration of ring formation lasted from mid-May to the end of October, with the length of the growing season decreasing along elevation from 137 to 101 days. The onset of the different growing seasons changed by 3-4 days per 100 m elevation; the ending of the growing season, however, appeared minimally related to altitude. If associated with the monitored altitudinal lapse rate of -0.5 degrees C per 100 m, these results translate into a lengthening of the growing season by approximately 7 days per degree Celsius. This study provides new data on the timing and duration of basic growth processes and contributes to quantification of the impacts of global warming on tree growth and productivity.

Biological and environmental controls on tree transpiration in a suburban landscape

Science.gov (United States)

Peters, Emily B.; McFadden, Joseph P.; Montgomery, Rebecca A.

2010-12-01

Tree transpiration provides a variety of ecosystem services in urban areas, including amelioration of urban heat island effects and storm water management. Tree species vary in the magnitude and seasonality of transpiration owing to differences in physiology, response to climate, and biophysical characteristics, thereby complicating efforts to manage evapotranspiration at city scales. We report sap flux measurements during the 2007 and 2008 growing seasons for dominant tree species in a suburban neighborhood of Minneapolis-Saint Paul, Minnesota, USA. Evergreen needleleaf trees had significantly higher growing season means and annual transpiration per unit canopy area (1.90 kg H2O m-2 d-1 and 307 kg H2O m-2 yr-1, respectively) than deciduous broadleaf trees (1.11 kg H2O m-2 d-1 and 153 kg H2O m-2 yr-1, respectively) because of a smaller projected canopy area (31.1 and 73.6 m2, respectively), a higher leaf area index (8.8 and 5.5 m2 m-2, respectively), and a longer growth season (8 and 4 months, respectively). Measurements also showed patterns consistent with the species' differences in xylem anatomy (conifer, ring porous, and diffuse porous). As the growing season progressed, conifer and diffuse porous genera had increased stomatal regulation to high vapor pressure deficit, while ring porous genera maintained greater and more constant stomatal regulation. These results suggest that evaporative responses to climate change in urban ecosystems will depend in part on species composition. Overall, plant functional type differences in canopy structure and growing season length were most important in explaining species' differences in midsummer and annual transpiration, offering an approach to predicting the evapotranspiration component of urban water budgets.

Reasons for the Fast Growing Seawater Desalination Capacity in Algeria

KAUST Repository

Drouiche, Nadjib; Ghaffour, NorEddine; Naceur, Mohamed Wahib; Mahmoudi, Hacè ne; Ouslimane, Tarik

2011-01-01

growing markets. Five desalination plants, including the Africa's largest seawater reverse osmosis project with a total capacity of 200,000 m3 per day, are already in operation and the remaining projects are either under construction or in commissioning

Trees of Our National Forests.

Science.gov (United States)

Forest Service (USDA), Washington, DC.

Presented is a description of the creation of the National Forests system, how trees grow, managing the National Forests, types of management systems, and managing for multiple use, including wildlife, water, recreation and other uses. Included are: (1) photographs; (2) line drawings of typical leaves, cones, flowers, and seeds; and (3)…

Trees, Shrubs, and Woody Vines of the Bluff Experimental Forest, Warren County, Mississippi

Science.gov (United States)

Robert L. Johnson; Elbert L. Little

1967-01-01

Nearly 100 species of trees, shrubs, and woody vines grow naturally on the 450-acre Bluff Experimental Forest in west-central Mississippi. This publication lists the plants and provides information on silvical characteristics of the tree species.

Mixed-Mode Oscillations Due to a Singular Hopf Bifurcation in a Forest Pest Model

DEFF Research Database (Denmark)

Brøns, Morten; Desroches, Mathieu; Krupa, Martin

2015-01-01

In a forest pest model, young trees are distinguished from old trees. The pest feeds on old trees. The pest grows on a fast scale, the young trees on an intermediate scale, and the old trees on a slow scale. A combination of a singular Hopf bifurcation and a “weak return” mechanism, characterized...

A longitudinal comparison of the growth factors of Slovenian fast growing enterprises

Directory of Open Access Journals (Sweden)

Viljem Pšeničny

2009-11-01

Full Text Available The article presents the main features of Slovenia’s fastest growing companies and compares them with “gazelles” in the EU. The longitudinal survey presented connects with three other studies applying the same research method, namely studies employing the same questionnaire on growth factors that affect growing companies through to the criteria by which they were selected as growing businesses for the survey. The author notes that the growth factors which have an impact on Slovenian businesses and gazelles in the EU mostly do not show any significant differences, and that these differences also did not change significantly over a 15-year period. This hypothesis is verified by both statistical methods and the data mining method called machine learning from examples.

Gene-Tree Reconciliation with MUL-Trees to Resolve Polyploidy Events.

Science.gov (United States)

Gregg, W C Thomas; Ather, S Hussain; Hahn, Matthew W

2017-11-01

Polyploidy can have a huge impact on the evolution of species, and it is a common occurrence, especially in plants. The two types of polyploids-autopolyploids and allopolyploids-differ in the level of divergence between the genes that are brought together in the new polyploid lineage. Because allopolyploids are formed via hybridization, the homoeologous copies of genes within them are at least as divergent as orthologs in the parental species that came together to form them. This means that common methods for estimating the parental lineages of allopolyploidy events are not accurate, and can lead to incorrect inferences about the number of gene duplications and losses. Here, we have adapted an algorithm for topology-based gene-tree reconciliation to work with multi-labeled trees (MUL-trees). By definition, MUL-trees have some tips with identical labels, which makes them a natural representation of the genomes of polyploids. Using this new reconciliation algorithm we can: accurately place allopolyploidy events on a phylogeny, identify the parental lineages that hybridized to form allopolyploids, distinguish between allo-, auto-, and (in most cases) no polyploidy, and correctly count the number of duplications and losses in a set of gene trees. We validate our method using gene trees simulated with and without polyploidy, and revisit the history of polyploidy in data from the clades including both baker's yeast and bread wheat. Our re-analysis of the yeast data confirms the allopolyploid origin and parental lineages previously identified for this group. The method presented here should find wide use in the growing number of genomes from species with a history of polyploidy. [Polyploidy; reconciliation; whole-genome duplication.]. © The Author(s) 2017. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Centennial Olive trees in Lebanon: a substantial patrimony

OpenAIRE

Chalak, L.; Malas, F.; Hamadeh, B.; Essalouh, Laila; Khadari, Bouchaib

2014-01-01

This study aimed to assess the centennial olive trees growing across Lebanon, with the perspective of conservation of the ancient germplasm. The survey indicated the existence of numerous centennial olive trees distributed in different agro-climatic areas, from 80 to 1350 meters altitude across the country. Centennial olives were found in large size orchards and scattered as well as in young orchards, road hedges and gardens for ornamental purposes. Yet, no reliable information...

Fast and accurate methods for phylogenomic analyses

Directory of Open Access Journals (Sweden)

Warnow Tandy

2011-10-01

Full Text Available Abstract Background Species phylogenies are not estimated directly, but rather through phylogenetic analyses of different gene datasets. However, true gene trees can differ from the true species tree (and hence from one another due to biological processes such as horizontal gene transfer, incomplete lineage sorting, and gene duplication and loss, so that no single gene tree is a reliable estimate of the species tree. Several methods have been developed to estimate species trees from estimated gene trees, differing according to the specific algorithmic technique used and the biological model used to explain differences between species and gene trees. Relatively little is known about the relative performance of these methods. Results We report on a study evaluating several different methods for estimating species trees from sequence datasets, simulating sequence evolution under a complex model including indels (insertions and deletions, substitutions, and incomplete lineage sorting. The most important finding of our study is that some fast and simple methods are nearly as accurate as the most accurate methods, which employ sophisticated statistical methods and are computationally quite intensive. We also observe that methods that explicitly consider errors in the estimated gene trees produce more accurate trees than methods that assume the estimated gene trees are correct. Conclusions Our study shows that highly accurate estimations of species trees are achievable, even when gene trees differ from each other and from the species tree, and that these estimations can be obtained using fairly simple and computationally tractable methods.

Ozone exposure, uptake, and response of different-sized black cherry trees

Science.gov (United States)

Todd S. Frederickson; John M. Skelly; Kim C. Steiner; Thomas E. Kolb

1996-01-01

Differences in exposure, uptake and relative sensitivity to ozone between seedling, sapling, and canopy black cherry (Prunus serotina Ehrh.) trees were characterized during two growing seasons in north central Pennsylvania. Open-grown trees of all sizes received a similar amount of ozone exposure. Seedlings had greater foliar ozone injury, expressed...

Multiscale Vessel-guided Airway Tree Segmentation

DEFF Research Database (Denmark)

Lo, Pechin Chien Pau; Sporring, Jon; de Bruijne, Marleen

2009-01-01

This paper presents a method for airway tree segmentation that uses a combination of a trained airway appearance model, vessel and airway orientation information, and region growing. The method uses a voxel classification based appearance model, which involves the use of a classifier that is trai...

Lignin-enriched Fermentation Residues from Bioethanol Production of Fast-growing Poplar and Forage Sorghum

Directory of Open Access Journals (Sweden)

José I Santos

2015-07-01

Full Text Available The current challenges in developing a cost-effective bioethanol industry include the production of not only high-volume, low cost biofuels but also high-value products with minimal downstream waste. The up-grading of side-stream lignins from bioethanol production plants to novel high-value products will improve the profitability of the bioethanol industry; to do that, a precise understanding of lignin is required. In the present study, lignin-enriched fermentation residues from bioethanol production (steam explosion pretreatment, saccharification, and fermentation of fast-growing poplar and forage sorghum were characterized. In addition to the purity and composition, lignin structure (syringyl/guaiacyl (S/G ratio, inter-unit linkages was also analyzed with spectroscopy techniques such as Fourier transform infrared and two-dimensional nuclear magnetic resonance. Bioethanol processing and feedstock origins seemed to be the main factors determining the purity, composition, and structure of lignins. Residual lignins from poplar and forage sorghum contained significant amounts of sugar and protein impurities. Poplar lignin showed a very high S/G ratio associated with p-hydroxybenzoate. A lower S/G ratio together with H lignin units and p-hydroxycinnamates (p-coumarate and ferulate was observed for forage sorghum lignin. The main inter-unit linkages present in both lignins were β-O-4´ aryl ether followed by resinols and phenylcoumarans.

MLIP: A Concurrent Approach for Clipping Indexing

OpenAIRE

Majoju Ravinder; R.Vijay Prakash

2011-01-01

Multidimensional databases are beginning to be used in a wide range of applications. To meet this fast-growing demand, the R-tree family is being applied to support fast access to multidimensional data, for which the R+-tree exhibits outstanding search performance. In order to support efficient concurrent access in multi-user environments, concurrency control mechanisms for multidimensional indexing have been proposed. However, these mechanisms cannot be directly applied to the R+-tree becaus...

Variable conductivity and embolism in roots, trunks and branches of tree species growing under future atmospheric CO2 concentration (DUKE FACE site): impacts on whole-plant hydraulic performance and carbon assimilation

Science.gov (United States)

domec, J.; Palmroth, S.; Oren, R.; Johnson, D. M.; Ward, E. J.; McCulloh, K.; Gonzalez, C.; Warren, J.

2013-12-01

Anatomical and physiological acclimation to water stress of the tree hydraulic system involves tradeoffs between maintenance of stomatal conductance and loss of hydraulic conductivity, with short-term impacts on photosynthesis and long-term consequences to survival and growth. Here we study the role of variations in root, trunk and branch maximum hydraulic specific conductivity (Ks-max) under high and low soil moisture in determining whole-tree hydraulic conductance (Ktree) and in mediating stomatal control of gas exchange in loblolly pine trees growing under ambient and elevated CO2 (CO2a and CO2e). We hypothesized that Ktree would adjust to CO2e, through an increase in root and branch Ks-max in response to anatomical adjustments. Embolism in roots explained the loss of Ktree and therefore indirectly constituted a hydraulic signal involved in stomatal regulation and in the reduction of canopy conductance and carbon assimilation. Across roots, trunk and branches, the increase in Ks-max was associated with a decrease resistance to drought, a consequence of structural acclimation such as larger conduits and lower wood density. In loblolly pine, higher xylem dysfunction under CO2e might impact tree performance in a future climate when increased evaporative demand could cause a greater loss of hydraulic function. The results contributed to our knowledge of the physiological and morphological mechanisms underpinning the responses of tree species to drought and more generally to global change.

FAST AND ROBUST SEGMENTATION AND CLASSIFICATION FOR CHANGE DETECTION IN URBAN POINT CLOUDS

Directory of Open Access Journals (Sweden)

X. Roynard

2016-06-01

Full Text Available Change detection is an important issue in city monitoring to analyse street furniture, road works, car parking, etc. For example, parking surveys are needed but are currently a laborious task involving sending operators in the streets to identify the changes in car locations. In this paper, we propose a method that performs a fast and robust segmentation and classification of urban point clouds, that can be used for change detection. We apply this method to detect the cars, as a particular object class, in order to perform parking surveys automatically. A recently proposed method already addresses the need for fast segmentation and classification of urban point clouds, using elevation images. The interest to work on images is that processing is much faster, proven and robust. However there may be a loss of information in complex 3D cases: for example when objects are one above the other, typically a car under a tree or a pedestrian under a balcony. In this paper we propose a method that retain the three-dimensional information while preserving fast computation times and improving segmentation and classification accuracy. It is based on fast region-growing using an octree, for the segmentation, and specific descriptors with Random-Forest for the classification. Experiments have been performed on large urban point clouds acquired by Mobile Laser Scanning. They show that the method is as fast as the state of the art, and that it gives more robust results in the complex 3D cases.

Tree crown structure indicators in a natural uneven-aged mixed coniferous forest in northeastern Mexico

Science.gov (United States)

Javier Jimenez-Perez; Oscar Aguirre-Calderon; Horst Kramer

2006-01-01

Characterization of tree crown structure provides critical information to assess a variety of ecological conditions for multiple purposes and applications. For biomass growth, for example, tree crowns have basic physiological functions: assimilation, respiration, and transpiration. How tree crowns spatially interact and grow can bring about a seamless landscape of...

Spot Anthracnose Disease Caused by Colletotrichum gloeosporioides on Tulip Tree in Korea.

Science.gov (United States)

Choi, Okryun; Choi, Okhee; Kwak, Youn-Sig; Kim, Jinwoo; Kwon, Jin-Hyeuk

2012-03-01

The tulip tree (Liriodendron chinense) has been widely cultivated in Korea as a street or garden tree for its large flowers, which have a superficial resemblance to tulips. Occurrence of anthracnose disease on the leaves of tulip trees growing on the campus of Gyeongsang National University, Jinju, Korea, has been observed. Based on mycological characteristics, pathogenicity, and internal transcribed spacer sequence, the causal fungus was identified as Colletotrichum gloeosporioides. This is the first report on anthracnose disease caused by C. gloeosporioides on tulip trees in Korea.

Capacity of old trees to respond to environmental change.

Science.gov (United States)

Phillips, Nathan G; Buckley, Thomas N; Tissue, David T

2008-11-01

Atmospheric carbon dioxide [CO2] has increased dramatically within the current life spans of long-lived trees and old forests. Consider that a 500-year-old tree in the early twenty-first century has spent 70% of its life growing under pre-industrial levels of [CO2], which were 30% lower than current levels. Here we address the question of whether old trees have already responded to the rapid rise in [CO2] occurring over the past 150 years. In spite of limited data, aging trees have been shown to possess a substantial capacity for increased net growth after a period of post-maturity growth decline. Observations of renewed growth and physiological function in old trees have, in some instances, coincided with Industrial Age increases in key environmental resources, including [CO2], suggesting the potential for continued growth in old trees as a function of continued global climate change.

Effects of ambient temperature and early open-field response on the behaviour, feed intake and growth of fast- and slow-growing broiler strains

DEFF Research Database (Denmark)

Nielsen, Birte Lindstrøm

2012-01-01

Increased activity improves broiler leg health, but also increases the heat production of the bird. This experiment investigated the effects of early open-field activity and ambient temperature on the growth and feed intake of two strains of broiler chickens. On the basis of the level of activity...... in an open-field test on day 3 after hatching, fast-growing Ross 208 and slow-growing i657 chickens were allocated on day 13 to one of the 48 groups. Each group included either six active or six passive birds from each strain and the groups were housed in floor-pens littered with wood chips and fitted...... with two heat lamps. Each group was fed ad libitum and subjected to one of the three temperature treatments: two (HH; 268C), one (HC; 168C to 268C) or no (CC; 168C) heat lamps turned on. Production and behavioural data were collected every 2 weeks until day 57. For both strains, early open-field activity...

Modular representation and analysis of fault trees

Energy Technology Data Exchange (ETDEWEB)

Olmos, J; Wolf, L [Massachusetts Inst. of Tech., Cambridge (USA). Dept. of Nuclear Engineering

1978-08-01

An analytical method to describe fault tree diagrams in terms of their modular compositions is developed. Fault tree structures are characterized by recursively relating the top tree event to all its basic component inputs through a set of equations defining each of the modulus for the fault tree. It is shown that such a modular description is an extremely valuable tool for making a quantitative analysis of fault trees. The modularization methodology has been implemented into the PL-MOD computer code, written in PL/1 language, which is capable of modularizing fault trees containing replicated components and replicated modular gates. PL-MOD in addition can handle mutually exclusive inputs and explicit higher order symmetric (k-out-of-n) gates. The step-by-step modularization of fault trees performed by PL-MOD is demonstrated and it is shown how this procedure is only made possible through an extensive use of the list processing tools available in PL/1. A number of nuclear reactor safety system fault trees were analyzed. PL-MOD performed the modularization and evaluation of the modular occurrence probabilities and Vesely-Fussell importance measures for these systems very efficiently. In particular its execution time for the modularization of a PWR High Pressure Injection System reduced fault tree was 25 times faster than that necessary to generate its equivalent minimal cut-set description using MOCUS, a code considered to be fast by present standards.

Assisted migration: What it means to nursery managers and tree planters

Science.gov (United States)

Mary I. Williams; R. Kasten Dumroese

2014-01-01

Projections indicate that natural plant adaptation and migration may not keep pace with climate changes. This mismatch in rates will pose significant challenges for practitioners that select, grow, and outplant native tree species. Populations of native tree species planted today must be able to meet the climatic challenges they will face during this century. One...

Crop tree release options for young hardwood stands in North Carolina

Science.gov (United States)

Jamie L. Schuler; Daniel J. Robison

2006-01-01

Harvesting southern hardwood forests using even-aged reproduction methods commonly regenerate new stands with 20,000 to 50,000 stems per acre. Overstocking and an overabundance of non-commercial tree species are considered major constraints to growing productive and valuable hardwoods. Crop tree release practices have been promoted as an efficient way of thinning young...

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology.

Science.gov (United States)

Adam, Panagiotis S; Borrel, Guillaume; Brochier-Armanet, Céline; Gribaldo, Simonetta

2017-11-01

The Archaea occupy a key position in the Tree of Life, and are a major fraction of microbial diversity. Abundant in soils, ocean sediments and the water column, they have crucial roles in processes mediating global carbon and nutrient fluxes. Moreover, they represent an important component of the human microbiome, where their role in health and disease is still unclear. The development of culture-independent sequencing techniques has provided unprecedented access to genomic data from a large number of so far inaccessible archaeal lineages. This is revolutionizing our view of the diversity and metabolic potential of the Archaea in a wide variety of environments, an important step toward understanding their ecological role. The archaeal tree is being rapidly filled up with new branches constituting phyla, classes and orders, generating novel challenges for high-rank systematics, and providing key information for dissecting the origin of this domain, the evolutionary trajectories that have shaped its current diversity, and its relationships with Bacteria and Eukarya. The present picture is that of a huge diversity of the Archaea, which we are only starting to explore.

Response patterns in adult forest trees to chronic ozone stress: identification of variations and consistencies

International Nuclear Information System (INIS)

Nunn, Angela J.; Reiter, Ilja M.; Haeberle, Karl-Heinz; Langebartels, Christian; Bahnweg, Guenther; Pretzsch, Hans; Sandermann, Heinrich; Matyssek, Rainer

2005-01-01

The responsiveness of adult beech and spruce trees to chronic O 3 stress was studied at a free-air O 3 exposure experiment in Freising/Germany. Over three growing seasons, gas exchange characteristics, biochemical parameters, macroscopic O 3 injury and the phenology of leaf organs were investigated, along with assessments of branch and stem growth as indications of tree performance. To assess response pattern to chronic O 3 stress in adult forest trees, we introduce a new evaluation approach, which provides a comprehensive, readily accomplishable overview across several tree-internal scaling levels, different canopy regions and growing seasons. This new approach, based on a three-grade colour coding, combines statistical analysis and the proficient ability of the 'human eye' in pattern recognition. - Responses of adult forest trees to chronic O 3 stress can be visualized in a survey table applying a three-grade colour coding to each investigated parameter

Relating tree growth to rainfall in Bolivian rain forests: a test for six species using tree ring analysis.

Science.gov (United States)

Brienen, Roel J W; Zuidema, Pieter A

2005-11-01

Many tropical regions show one distinct dry season. Often, this seasonality induces cambial dormancy of trees, particularly if these belong to deciduous species. This will often lead to the formation of annual rings. The aim of this study was to determine whether tree species in the Bolivian Amazon region form annual rings and to study the influence of the total amount and seasonal distribution of rainfall on diameter growth. Ring widths were measured on stem discs of a total of 154 trees belonging to six rain forest species. By correlating ring width and monthly rainfall data we proved the annual character of the tree rings for four of our study species. For two other species the annual character was proved by counting rings on trees of known age and by radiocarbon dating. The results of the climate-growth analysis show a positive relationship between tree growth and rainfall in certain periods of the year, indicating that rainfall plays a major role in tree growth. Three species showed a strong relationship with rainfall at the beginning of the rainy season, while one species is most sensitive to the rainfall at the end of the previous growing season. These results clearly demonstrate that tree ring analysis can be successfully applied in the tropics and that it is a promising method for various research disciplines.

Contact zoonosis related to aquaculture: a growing concern

Science.gov (United States)

Aquaculture develops fast worldwide, with new cultured species and increased global transport of live aquaculture products. There is a growing recognition of zoonotic disease agents causing epidemics and carrier states in cultured fish and shellfish, especially from warm water systems, transmitted t...

Riparian trees as common denominators across the river flow ...

African Journals Online (AJOL)

Riparian tree species, growing under different conditions of water availability, can ... leaf area and increasing wood density correlating with deeper groundwater levels. ... and Sanddrifskloof Rivers (South Africa) under reduced flow conditions.

STRIDE: Species Tree Root Inference from Gene Duplication Events.

Science.gov (United States)

Emms, David M; Kelly, Steven

2017-12-01

The correct interpretation of any phylogenetic tree is dependent on that tree being correctly rooted. We present STRIDE, a fast, effective, and outgroup-free method for identification of gene duplication events and species tree root inference in large-scale molecular phylogenetic analyses. STRIDE identifies sets of well-supported in-group gene duplication events from a set of unrooted gene trees, and analyses these events to infer a probability distribution over an unrooted species tree for the location of its root. We show that STRIDE correctly identifies the root of the species tree in multiple large-scale molecular phylogenetic data sets spanning a wide range of timescales and taxonomic groups. We demonstrate that the novel probability model implemented in STRIDE can accurately represent the ambiguity in species tree root assignment for data sets where information is limited. Furthermore, application of STRIDE to outgroup-free inference of the origin of the eukaryotic tree resulted in a root probability distribution that provides additional support for leading hypotheses for the origin of the eukaryotes. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Distribution and mixing of old and new nonstructural carbon in two temperate trees.

Science.gov (United States)

Richardson, Andrew D; Carbone, Mariah S; Huggett, Brett A; Furze, Morgan E; Czimczik, Claudia I; Walker, Jennifer C; Xu, Xiaomei; Schaberg, Paul G; Murakami, Paula

2015-04-01

We know surprisingly little about whole-tree nonstructural carbon (NSC; primarily sugars and starch) budgets. Even less well understood is the mixing between recent photosynthetic assimilates (new NSC) and previously stored reserves. And, NSC turnover times are poorly constrained. We characterized the distribution of NSC in the stemwood, branches, and roots of two temperate trees, and we used the continuous label offered by the radiocarbon (carbon-14, (14) C) bomb spike to estimate the mean age of NSC in different tissues. NSC in branches and the outermost stemwood growth rings had the (14) C signature of the current growing season. However, NSC in older aboveground and belowground tissues was enriched in (14) C, indicating that it was produced from older assimilates. Radial patterns of (14) C in stemwood NSC showed strong mixing of NSC across the youngest growth rings, with limited 'mixing in' of younger NSC to older rings. Sugars in the outermost five growth rings, accounting for two-thirds of the stemwood pool, had a mean age  5 yr. Our results are thus consistent with a previously-hypothesized two-pool ('fast' and 'slow' cycling NSC) model structure. These pools appear to be physically distinct. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

Construction and application of hierarchical decision tree for classification of ultrasonographic prostate images

NARCIS (Netherlands)

Giesen, R. J.; Huynen, A. L.; Aarnink, R. G.; de la Rosette, J. J.; Debruyne, F. M.; Wijkstra, H.

1996-01-01

A non-parametric algorithm is described for the construction of a binary decision tree classifier. This tree is used to correlate textural features, computed from ultrasonographic prostate images, with the histopathology of the imaged tissue. The algorithm consists of two parts; growing and pruning.

Arquitectura de los árboles Tree architecture

Directory of Open Access Journals (Sweden)

Francis Hallé

2010-12-01

understand what a tree is: this mechanism turns a tree into a colony; «reiterated trees» (RT grow on top of each other the way parasites do. Reiteration means the birth of an entire tree, with trunk, branches and roots. A young RT grows vertically; then, with the help of wood plasticity and a lever, it inclines and turns horizontal, thus becoming more efficient in light capturing. It has been a relevant discovery to find, within a single tree crown, genetic variations from one RT to another: in several species, a tree is a colony of genomes.

Isolated Ficus trees deliver dual conservation and development benefits in a rural landscape

DEFF Research Database (Denmark)

Cottee-Jones, H. Eden W.; Bajpai, Omesh; Chaudhary, Lal B.

2015-01-01

strategy to manage the availability of valuable plant resources, facilitated by the use of isolated Ficus trees as restoration nuclei. We surveyed the plants growing under 207 isolated trees in Assam, India, and categorized them according to their local human-uses. We found that Ficus trees were associated...... densities in most categories. Community management practices that conserve isolated Ficus trees, and restrict livestock grazing and high-intensity land-use in their vicinity, can promote plant growth and the provision of important local resources....

ETE: a python Environment for Tree Exploration.

Science.gov (United States)

Huerta-Cepas, Jaime; Dopazo, Joaquín; Gabaldón, Toni

2010-01-13

Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relationships among different biological entities, thus facilitating their analysis and interpretation. A number of standalone programs are available that focus on tree visualization or that perform specific analyses on them. However, such applications are rarely suitable for large-scale surveys, in which a higher level of automation is required. Currently, many genome-wide analyses rely on tree-like data representation and hence there is a growing need for scalable tools to handle tree structures at large scale. Here we present the Environment for Tree Exploration (ETE), a python programming toolkit that assists in the automated manipulation, analysis and visualization of hierarchical trees. ETE libraries provide a broad set of tree handling options as well as specific methods to analyze phylogenetic and clustering trees. Among other features, ETE allows for the independent analysis of tree partitions, has support for the extended newick format, provides an integrated node annotation system and permits to link trees to external data such as multiple sequence alignments or numerical arrays. In addition, ETE implements a number of built-in analytical tools, including phylogeny-based orthology prediction and cluster validation techniques. Finally, ETE's programmable tree drawing engine can be used to automate the graphical rendering of trees with customized node-specific visualizations. ETE provides a complete set of methods to manipulate tree data structures that extends current functionality in other bioinformatic toolkits of a more general purpose. ETE is free software and can be downloaded from http://ete.cgenomics.org.

ETE: a python Environment for Tree Exploration

Directory of Open Access Journals (Sweden)

Gabaldón Toni

2010-01-01

Full Text Available Abstract Background Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relationships among different biological entities, thus facilitating their analysis and interpretation. A number of standalone programs are available that focus on tree visualization or that perform specific analyses on them. However, such applications are rarely suitable for large-scale surveys, in which a higher level of automation is required. Currently, many genome-wide analyses rely on tree-like data representation and hence there is a growing need for scalable tools to handle tree structures at large scale. Results Here we present the Environment for Tree Exploration (ETE, a python programming toolkit that assists in the automated manipulation, analysis and visualization of hierarchical trees. ETE libraries provide a broad set of tree handling options as well as specific methods to analyze phylogenetic and clustering trees. Among other features, ETE allows for the independent analysis of tree partitions, has support for the extended newick format, provides an integrated node annotation system and permits to link trees to external data such as multiple sequence alignments or numerical arrays. In addition, ETE implements a number of built-in analytical tools, including phylogeny-based orthology prediction and cluster validation techniques. Finally, ETE's programmable tree drawing engine can be used to automate the graphical rendering of trees with customized node-specific visualizations. Conclusions ETE provides a complete set of methods to manipulate tree data structures that extends current functionality in other bioinformatic toolkits of a more general purpose. ETE is free software and can be downloaded from http://ete.cgenomics.org.

Economic Cost-Analysis of the Impact of Container Size on Transplanted Tree Value

Directory of Open Access Journals (Sweden)

Lauren M. Garcia Chance

2017-04-01

Full Text Available The benefits and costs of varying container sizes have yet to be fully evaluated to determine which container size affords the most advantageous opportunity for consumers. To determine value of the tree following transplant, clonal replicates of Vitex agnus-castus L. [Chaste Tree], Acer rubrum L. var. drummondii (Hook. & Arn. ex Nutt. Sarg. [Drummond Red Maple], and Taxodium distichum (L. Rich. [Baldcypress] were grown under common conditions in each of five container sizes 3.5, 11.7, 23.3, 97.8 or 175.0 L, respectively (#1, 3, 7, 25 or 45. In June 2013, six trees of each container size and species were transplanted to a sandy clay loam field in College Station, Texas. To determine the increase in value over a two-year post-transplant period, height and caliper measurements were taken at the end of nursery production and again at the end of the second growing season in the field, October 2014. Utilizing industry standards, initial costs of materials and labor were then compared with the size of trees after two years. Replacement cost analysis after two growing seasons indicated a greater increase in value for 11.7 and 23.3 L trees compared to losses in value for some 175.0 L trees. In comparison with trees from larger containers, trees from smaller size containers experienced shorter establishment times and increased growth rates, thus creating a quicker return on investment for trees transplanted from the smaller container sizes.

14C concentrations in tree stems, 1

International Nuclear Information System (INIS)

Kikata, Yoji; Yonenobu, Hitoshi; Morishita, Fumio; Hattori, Yoshiaki; Marsoen, S.N.

1993-01-01

The 14 C concentrations in trees sampled at various latitudes were measured with a Tandetron Accelerator Mass Spectrometer at Nagoya University. The growing periods of the parts for 14 C measurements were estimated by the relationship between meteorological conditions and the appearance of anatomical features of annual rings such as false rings, latewood formation, and so on. The following results were obtained: 1. The latitude dependence of the 14 C variation is found in tree stems as well as in the atmosphere. 2. The 14 C concentrations in tree stems are almost equal to those in the atmosphere at the latitude where the tree had grown and at the time when the sampled section is formed. Therefore the 14 C concentrations in the atmosphere are estimated by those of the tree stems. 3. The time when the 14 C concentration in the tree showed its maximum value has difference of 1 - 2 years with that of the latitude where the tree had grown. 4. This phenomena seemed to be related closely with the mechanism of global mixing of 14 CO 2 produced by atmospheric nuclear weapon tests. This mechanism causes a time lag of 14 C variation between northern and southern hemisphere. (author)

Bottles to trees: Plastic beverage bottles as an alternative nursery growing container for reforestation in developing countries

Science.gov (United States)

Khurram, Safiullah; Burney, Owen T.; Morrissey, Robert C.

2017-01-01

Reforestation is needed globally to help restore degraded sites, combat desertification, protect watersheds, and provide forest products. This involves planting forest tree seedlings grown in local nurseries, but technologies to produce quality seedlings are lacking in developing countries. Modern nursery containers used to propagate seedlings have internal-surface barriers (ribs or ridges) or side-slits to prevent root spiraling. These are cost prohibitive or unavailable in developing countries and so polybags (plastic bags) are more commonly used, despite their tendency to produce seedlings with deformed root systems that have less potential to establish on field sites. Discarded plastic bottles, which are readily available worldwide, may be a feasible alternative for seedling propagation. We conducted two experiments to assess the potential of repurposed plastic beverage bottles to grow quality trees: 1) Container Comparison–to evaluate Arizona walnut (Juglans major [Toor.] Heller) and Afghan pine (Pinus eldarica Medw.) seedling root and shoot development in two plastic bottle types compared to modern nursery containers and polybags, and 2) Bottle Modification–to examine the effects of root spiraling prevention techniques (side-slits, internal-ridges, and control) and container opacity (green, black, and clear) on Afghan pine seedling morphological attributes. Nursery growth and first-year seedling field performance were evaluated for both experiments. In experiment one, seedlings of both species had fewer spiraled roots in bottle containers compared to polybags. Arizona walnut had more fibrous root systems in polybags, while Afghan pine root system fibrosity was greatest in bottle containers. First-year field performance of both species was not affected by container type. In experiment two, less spiraled roots occurred in containers with air-slits and interior-ridges compared to the control. The effects of container opacity on seedling morphology were

14C distribution and mobilization in young apple trees in autumn and spring

International Nuclear Information System (INIS)

Katzfuss, M.

1979-01-01

14 CO 2 was administered to young apple trees in autumn and the roots proved to be the most important storage organ for 14 C in this season. From autumn to spring the 14 C content of the roots, rootstocks, and the two-year-old shoots decreased strongly, while the respective level of the one-year-old shoots decreased only slightly. In spring the growing buds were the main consuming organs of 14 C-assimilates stored in the different organs of the tree at the end of the growing season

Interaction between sapwood and foliage area in alpine ash (Eucalyptus delegatensis) trees of different heights.

Science.gov (United States)

Mokany, Karel; McMurtrie, Ross E; Atwell, Brian J; Keith, Heather

2003-10-01

In native stands of Eucalyptus delegatensis R. T. Baker, sapwood area (As) to foliage area (Af) ratios (As:Af) decreased as tree height increased, contradicting the common interpretation of the Pipe Model Theory as well as the generally observed trend of increasing As:Af ratios with tree height. To clarify this relationship, we estimated sapwood hydraulic conductivity theoretically based on measurements of sapwood vessel diameters and Poiseuille's law for fluid flow through pipes. Despite the observed decrease in As:Af ratios with tree height, leaf specific conductivity increased with total tree height, largely as a result of an increase in the specific conductivity of sapwood. This observation supports the proposition that the stem's ability to supply foliage with water must increase as trees grow taller, to compensate for the increased hydraulic path length. The results presented here highlight the importance of measuring sapwood hydraulic conductivity in analyses of sapwood-foliage interactions, and suggest that measurements of sapwood hydraulic conductivity may help to resolve conflicting observations of how As:Af ratios change as trees grow taller.

Heavy metals in emergent trees and pioneers from tropical forest with special reference to forest fires and local pollution sources in Sarawak, Malaysia.

Science.gov (United States)

Breulman, G; Markert, B; Weckert, V; Herpin, U; Yoneda, R; Ogino, K

2002-02-21

Leaf samples of tropical trees, i.e. Dryobalanops lanceolata (Kapur paji), Dipterocarpaceae and Macaranga spp. (Mahang), Euphorbiaceae were analyzed for 21 chemical elements. The pioneer Macaranga spp. exhibited higher concentrations for the majority of elements compared to the emergent species of Dryobalanops lanceolata, which was attributed to the higher physiological activity of the fast growing pioneer species compared to emergent trees. Lead showed rather high concentrations in several samples from the Bakam re-forestation site. This is suggested to be caused by emissions through brick manufacturing and related activities in the vicinity. A comparison of Dryobalanops lanceolata samples collected in 1993, 1995 and 1997 in the Lambir Hills National Park revealed that certain heavy metals, i.e. Co, Cu, Mn, Ni, Pb and Ti showed higher values in 1997 compared to the previous years, which could indicate an atmospheric input from the haze caused by the extensive forest fires raging in Borneo and other parts of Southeast Asia.

Boosted classification trees result in minor to modest improvement in the accuracy in classifying cardiovascular outcomes compared to conventional classification trees

Science.gov (United States)

Austin, Peter C; Lee, Douglas S

2011-01-01

Purpose: Classification trees are increasingly being used to classifying patients according to the presence or absence of a disease or health outcome. A limitation of classification trees is their limited predictive accuracy. In the data-mining and machine learning literature, boosting has been developed to improve classification. Boosting with classification trees iteratively grows classification trees in a sequence of reweighted datasets. In a given iteration, subjects that were misclassified in the previous iteration are weighted more highly than subjects that were correctly classified. Classifications from each of the classification trees in the sequence are combined through a weighted majority vote to produce a final classification. The authors' objective was to examine whether boosting improved the accuracy of classification trees for predicting outcomes in cardiovascular patients. Methods: We examined the utility of boosting classification trees for classifying 30-day mortality outcomes in patients hospitalized with either acute myocardial infarction or congestive heart failure. Results: Improvements in the misclassification rate using boosted classification trees were at best minor compared to when conventional classification trees were used. Minor to modest improvements to sensitivity were observed, with only a negligible reduction in specificity. For predicting cardiovascular mortality, boosted classification trees had high specificity, but low sensitivity. Conclusions: Gains in predictive accuracy for predicting cardiovascular outcomes were less impressive than gains in performance observed in the data mining literature. PMID:22254181

Habitat conditions and phenological tree traits overrule the influence of tree genotype in the needle mycobiome-Picea glauca system at an arctic treeline ecotone.

Science.gov (United States)

Eusemann, Pascal; Schnittler, Martin; Nilsson, R Henrik; Jumpponen, Ari; Dahl, Mathilde B; Würth, David G; Buras, Allan; Wilmking, Martin; Unterseher, Martin

2016-09-01

Plant-associated mycobiomes in extreme habitats are understudied and poorly understood. We analysed Illumina-generated ITS1 sequences from the needle mycobiome of white spruce (Picea glauca) at the northern treeline in Alaska (USA). Sequences were obtained from the same DNA that was used for tree genotyping. In the present study, fungal metabarcoding and tree microsatellite data were compared for the first time. In general, neighbouring trees shared more fungal taxa with each other than trees growing in further distance. Mycobiomes correlated strongly with phenological host traits and local habitat characteristics contrasting a dense forest stand with an open treeline site. Genetic similarity between trees did not influence fungal composition and no significant correlation existed between needle mycobiome and tree genotype. Our results suggest the pronounced influence of local habitat conditions and phenotypic tree traits on needle-inhabiting fungi. By contrast, the tree genetic identity cannot be benchmarked as a dominant driver for needle-inhabiting mycobiomes, at least not for white spruce in this extreme environment. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Releasing 75- to 80-year-old Appalachian hardwood sawtimber trees--5-year d.b.h. response

Science.gov (United States)

H.C. Smith; G.W. Miller

1991-01-01

Generally, mature trees on good growing sites are seldom thinned or released. Instead, at maturity the trees are harvested. Data were summarized from north-central West Virginia study areas (northern red oak site index 70 feet and above) where mature trees were released on all sides of the crown (full release).

Recruiting Conventional Tree Architecture Models into State-of-the-Art LiDAR Mapping for Investigating Tree Growth Habits in Structure.

Science.gov (United States)

Lin, Yi; Jiang, Miao; Pellikka, Petri; Heiskanen, Janne

2018-01-01

Mensuration of tree growth habits is of considerable importance for understanding forest ecosystem processes and forest biophysical responses to climate changes. However, the complexity of tree crown morphology that is typically formed after many years of growth tends to render it a non-trivial task, even for the state-of-the-art 3D forest mapping technology-light detection and ranging (LiDAR). Fortunately, botanists have deduced the large structural diversity of tree forms into only a limited number of tree architecture models, which can present a-priori knowledge about tree structure, growth, and other attributes for different species. This study attempted to recruit Hallé architecture models (HAMs) into LiDAR mapping to investigate tree growth habits in structure. First, following the HAM-characterized tree structure organization rules, we run the kernel procedure of tree species classification based on the LiDAR-collected point clouds using a support vector machine classifier in the leave-one-out-for-cross-validation mode. Then, the HAM corresponding to each of the classified tree species was identified based on expert knowledge, assisted by the comparison of the LiDAR-derived feature parameters. Next, the tree growth habits in structure for each of the tree species were derived from the determined HAM. In the case of four tree species growing in the boreal environment, the tests indicated that the classification accuracy reached 85.0%, and their growth habits could be derived by qualitative and quantitative means. Overall, the strategy of recruiting conventional HAMs into LiDAR mapping for investigating tree growth habits in structure was validated, thereby paving a new way for efficiently reflecting tree growth habits and projecting forest structure dynamics.

Seasonal shift in climatic limiting factors on tree transpiration: evidence from sap flow observations at alpine treelines in southeast Tibet

Directory of Open Access Journals (Sweden)

Liu Xinsheng

2016-07-01

Full Text Available Alpine and northern treelines are primarily controlled by low temperatures. However, little is known about the impact of low soil temperature on tree transpiration at treelines. We aim to test the hypothesis that in cold-limited forests, the main limiting factors for tree transpiration switch from low soil temperature before summer solstice to atmospheric evaporative demand after summer solstice, which generally results in low transpiration in the early growing season. Sap flow, meteorological factors and predawn needle water potential were continuously monitored throughout one growing season across Smith fir (Abies georgei var. smithii and juniper (Juniperus saltuaria treelines in southeast Tibet. Sap flow started in early May and corresponded to a threshold mean air-temperature of 0 oC. Across tree species, transpiration was mainly limited by low soil temperature prior to the summer solstice but by vapor pressure deficit and solar radiation post-summer solstice, which was further confirmed on a daily scale. As a result, tree transpiration for both tree species was significantly reduced in the pre-summer solstice period as compared to post-summer solstice, resulting in a lower predawn needle water potential for Smith fir trees in the early growing season. Our data supported the hypothesis, suggesting that tree transpiration mainly responds to soil temperature variations in the early growing season. The results are important for understanding the hydrological response of cold-limited forest ecosystems to climate change.

Long-term impacts of selective logging on two Amazonian tree species with contrasting ecological and reproductive characteristics: inferences from Eco-gene model simulations.

Science.gov (United States)

Vinson, C C; Kanashiro, M; Sebbenn, A M; Williams, T C R; Harris, S A; Boshier, D H

2015-08-01

The impact of logging and subsequent recovery after logging is predicted to vary depending on specific life history traits of the logged species. The Eco-gene simulation model was used to evaluate the long-term impacts of selective logging over 300 years on two contrasting Brazilian Amazon tree species, Dipteryx odorata and Jacaranda copaia. D. odorata (Leguminosae), a slow growing climax tree, occurs at very low densities, whereas J. copaia (Bignoniaceae) is a fast growing pioneer tree that occurs at high densities. Microsatellite multilocus genotypes of the pre-logging populations were used as data inputs for the Eco-gene model and post-logging genetic data was used to verify the output from the simulations. Overall, under current Brazilian forest management regulations, there were neither short nor long-term impacts on J. copaia. By contrast, D. odorata cannot be sustainably logged under current regulations, a sustainable scenario was achieved by increasing the minimum cutting diameter at breast height from 50 to 100 cm over 30-year logging cycles. Genetic parameters were only slightly affected by selective logging, with reductions in the numbers of alleles and single genotypes. In the short term, the loss of alleles seen in J. copaia simulations was the same as in real data, whereas fewer alleles were lost in D. odorata simulations than in the field. The different impacts and periods of recovery for each species support the idea that ecological and genetic information are essential at species, ecological guild or reproductive group levels to help derive sustainable management scenarios for tropical forests.

The dynamics of strangling among forest trees.

Science.gov (United States)

Okamoto, Kenichi W

2015-11-07

Strangler trees germinate and grow on other trees, eventually enveloping and potentially even girdling their hosts. This allows them to mitigate fitness costs otherwise incurred by germinating and competing with other trees on the forest floor, as well as minimize risks associated with host tree-fall. If stranglers can themselves host other strangler trees, they may not even seem to need non-stranglers to persist. Yet despite their high fitness potential, strangler trees neither dominate the communities in which they occur nor is the strategy particularly common outside of figs (genus Ficus). Here we analyze how dynamic interactions between strangling and non-strangling trees can shape the adaptive landscape for strangling mutants and mutant trees that have lost the ability to strangle. We find a threshold which strangler germination rates must exceed for selection to favor the evolution of strangling, regardless of how effectively hemiepiphytic stranglers may subsequently replace their hosts. This condition describes the magnitude of the phenotypic displacement in the ability to germinate on other trees necessary for invasion by a mutant tree that could potentially strangle its host following establishment as an epiphyte. We show how the relative abilities of strangling and non-strangling trees to occupy empty sites can govern whether strangling is an evolutionarily stable strategy, and obtain the conditions for strangler coexistence with non-stranglers. We then elucidate when the evolution of strangling can disrupt stable coexistence between commensal epiphytic ancestors and their non-strangling host trees. This allows us to highlight parallels between the invasion fitness of strangler trees arising from commensalist ancestors, and cases where strangling can arise in concert with the evolution of hemiepiphytism among free-standing ancestors. Finally, we discuss how our results can inform the evolutionary ecology of antagonistic interactions more generally

Three phylogenetic groups of nodA and nifH genes in Sinorhizobium and Mesorhizobium isolates from leguminous trees growing in Africa and Latin America.

Science.gov (United States)

Haukka, K; Lindström, K; Young, J P

1998-02-01

The diversity and phylogeny of nodA and nifH genes were studied by using 52 rhizobial isolates from Acacia senegal, Prosopis chilensis, and related leguminous trees growing in Africa and Latin America. All of the strains had similar host ranges and belonged to the genera Sinorhizobium and Mesorhizobium, as previously determined by 16S rRNA gene sequence analysis. The restriction patterns and a sequence analysis of the nodA and nifH genes divided the strains into the following three distinct groups: sinorhizobia from Africa, sinorhizobia from Latin America, and mesorhizobia from both regions. In a phylogenetic tree also containing previously published sequences, the nodA genes of our rhizobia formed a branch of their own, but within the branch no correlation between symbiotic genes and host trees was apparent. Within the large group of African sinorhizobia, similar symbiotic gene types were found in different chromosomal backgrounds, suggesting that transfer of symbiotic genes has occurred across species boundaries. Most strains had plasmids, and the presence of plasmid-borne nifH was demonstrated by hybridization for some examples. The nodA and nifH genes of Sinorhizobium teranga ORS1009T grouped with the nodA and nifH genes of the other African sinorhizobia, but Sinorhizobium saheli ORS609T had a totally different nodA sequence, although it was closely related based on the 16S rRNA gene and nifH data. This might be because this S. saheli strain was originally isolated from Sesbania sp., which belongs to a different cross-nodulation group than Acacia and Prosopis spp. The factors that appear to have influenced the evolution of rhizobial symbiotic genes vary in importance at different taxonomic levels.

Results of growing relatively smoke resistant types of trees and their practical use. [German Democratic Republic

Energy Technology Data Exchange (ETDEWEB)

Tzschacksch, O.

1985-01-01

Achievements in cultivating sulfur dioxide resistant conifers in the German Democratic Republic are summarized. These conifers will be planted in afforestation programs in smoke damage zones I, i.e. in conifer forests at high elevations with maximum pollution damage. Nurseries with the most promising tree types have been established for harvesting seeds for propagation. Cultivation of cuttings and tree grafting is carried out in experimental nurseries along with laboratory gas treatment tests. Smoke resistant varieties of the common spruce Picae abies (L.) show vigorous growth in smoke damage zone I. Other spruce types suitable for cultivation are Picea pungens Engelm., Picea omorica (Panc.) Purk. with the highest vitality in 15 to 20 year old trial plantings in smoke damage zone I extreme, and Picea glanca, rubens and orientalis. Suitable pines are Pinus contorta Dougl. ex Loud. (Murray pine), Pinus mugo Turra, and others; resistant larches are Larix decidua and Larix leptolepis. Deciduous trees being cultivated for afforestation are aspens (Populus tremula L.) and mountain ash (Sorbus aucuparia L.). 11 references.

Dust retaining properties of leaves of some tree species

Energy Technology Data Exchange (ETDEWEB)

Gusev, M I

1960-05-01

A study was made in Tashkent, Russia of the dust-retaining power of leaves of several tree species. Investigations were made in a park where these tree species were growing in close proximity, exposed to the effects of dust from the main city street and from the highway passing through the park. Observations on the dust-retaining power of leaves were made mostly during the summer and fall months. The dust-retaining power of leaves of different tree species varied with the dust concentration in the air. In the summer and fall when rains are scarce a steady accumulation of dust was observed on the surface of the leaves. 1 table.

Wood fuel from the agriculture. 5. rev. ed.; Energieholz aus der Landwirtschaft

Energy Technology Data Exchange (ETDEWEB)

Baerwolff, Manuela; Hansen, Hermann; Hofmann, Martin; Setzer, Frank

2012-11-01

The cultivation of fast-growing trees in short rotation is an extensive form of land use which appears thoroughly interesting in terms of climate change and the recent price development. In Germany cultivation concepts have to be oriented to the existing agricultural structure. It is a crucial requirement for the practical introduction of fast growing tree species to answer the following questions: (1) What should be considered in the cultivation?; (2) What types of trees are recommended?; (3) Which harvesting processes do exist?; (4) How does the economy present itself? The contribution under consideration attempts to answer these and other questions. The contribution summarizes the current state of knowledge from previous research and the first practical cultivations. The contribution is addressed to the practical farmer.

Plasticity in Vegetative Growth over Contrasted Growing Sites of an F1 Olive Tree Progeny during Its Juvenile Phase.

Science.gov (United States)

Ben Sadok, Inès; Martinez, Sebastien; Moutier, Nathalie; Garcia, Gilbert; Leon, Lorenzo; Belaj, Angelina; De La Rosa, Raúl; Khadari, Bouchaib; Costes, Evelyne

2015-01-01

Climatic changes impact fruit tree growth and severely limit their production. Investigating the tree ability to cope with environmental variations is thus necessary to adapt breeding and management strategies in order to ensure sustainable production. In this study, we assessed the genetic parameters and genotype by environment interaction (GxE) during the early tree growth. One hundred and twenty olive seedlings derived from the cross 'Olivière' x 'Arbequina' were examined across two sites with contrasted environments, accounting for ontogenetic trends over three years. Models including the year of growth, branching order, environment, genotype effects, and their interactions were built with variance function and covariance structure of residuals when necessary. After selection of a model, broad sense heritabilities were estimated. Despite strong environmental effect on most traits, no GxE was found. Moreover, the internal structure of traits co-variation was similar in both sites. Ontogenetic growth variation, related to (i) the overall tree form and (ii) the growth and branching habit at growth unit scale, was not altered by the environment. Finally, a moderate to strong genetic control was identified for traits at the whole tree scale and at internode scale. Among all studied traits, the maximal internode length exhibited the highest heritability (H2 = 0.74). Considering the determinant role of this trait in tree architecture and its stability across environments, this study consolidates its relevance for breeding.

The role of hybridization in facilitating tree invasion

Science.gov (United States)

Hybridization events can generate additional genetic diversity on which natural selection can act and at times enhance invasiveness of the species. Invasive tree species are a growing ecological concern worldwide, and some of these invasions involve hybridization events pre- or post-introduction. Th...

Spatial and Temporal Growth Variation of Pinus heldreichii Christ. Growing along a Latitudinal Gradient in Kosovo and Albania

OpenAIRE

Bojaxhi, Faruk; Toromani, Elvin

2017-01-01

Background and Purpose: Trees growing at high elevations are particularly sensitive to climate variability. In this study, tree-ring chronologies of Pinus heldreichii Christ. have been developed to examine their dynamism along a 350 km latitudinal gradient. Materials and Methods: Sampling was conducted in 6 high elevation sites along a latitudinal gradient from Kosovo and Albania. Two opposite cores from 148 healthy and dominant P. heldreichii trees were taken using an increment borer. Th...

Undergraduate Students’ Difficulties in Reading and Constructing Phylogenetic Tree

Science.gov (United States)

Sa'adah, S.; Tapilouw, F. S.; Hidayat, T.

2017-02-01

Representation is a very important communication tool to communicate scientific concepts. Biologists produce phylogenetic representation to express their understanding of evolutionary relationships. The phylogenetic tree is visual representation depict a hypothesis about the evolutionary relationship and widely used in the biological sciences. Phylogenetic tree currently growing for many disciplines in biology. Consequently, learning about phylogenetic tree become an important part of biological education and an interesting area for biology education research. However, research showed many students often struggle with interpreting the information that phylogenetic trees depict. The purpose of this study was to investigate undergraduate students’ difficulties in reading and constructing a phylogenetic tree. The method of this study is a descriptive method. In this study, we used questionnaires, interviews, multiple choice and open-ended questions, reflective journals and observations. The findings showed students experiencing difficulties, especially in constructing a phylogenetic tree. The students’ responds indicated that main reasons for difficulties in constructing a phylogenetic tree are difficult to placing taxa in a phylogenetic tree based on the data provided so that the phylogenetic tree constructed does not describe the actual evolutionary relationship (incorrect relatedness). Students also have difficulties in determining the sister group, character synapomorphy, autapomorphy from data provided (character table) and comparing among phylogenetic tree. According to them building the phylogenetic tree is more difficult than reading the phylogenetic tree. Finding this studies provide information to undergraduate instructor and students to overcome learning difficulties of reading and constructing phylogenetic tree.

Fault tree analysis: concepts and techniques

International Nuclear Information System (INIS)

Fussell, J.B.

1976-01-01

Concepts and techniques of fault tree analysis have been developed over the past decade and now predictions from this type analysis are important considerations in the design of many systems such as aircraft, ships and their electronic systems, missiles, and nuclear reactor systems. Routine, hardware-oriented fault tree construction can be automated; however, considerable effort is needed in this area to get the methodology into production status. When this status is achieved, the entire analysis of hardware systems will be automated except for the system definition step. Automated analysis is not undesirable; to the contrary, when verified on adequately complex systems, automated analysis could well become a routine analysis. It could also provide an excellent start for a more in-depth fault tree analysis that includes environmental effects, common mode failure, and human errors. The automated analysis is extremely fast and frees the analyst from the routine hardware-oriented fault tree construction, as well as eliminates logic errors and errors of oversight in this part of the analysis. Automated analysis then affords the analyst a powerful tool to allow his prime efforts to be devoted to unearthing more subtle aspects of the modes of failure of the system

Nitrous oxide fluxes from forest floor, tree stems and canopies of boreal tree species during spring

Science.gov (United States)

Haikarainen, Iikka; Halmeenmäki, Elisa; Machacova, Katerina; Pihlatie, Mari

2017-04-01

Boreal forests are considered as small sources of atmospheric nitrous oxide (N2O) due to microbial N2O production in the soils. Recent evidence shows that trees may play an important role in N2O exchange of forest ecosystems by offering pathways for soil produced N2O to the atmosphere. To confirm magnitude, variability and the origin of the tree mediated N2O emissions more research is needed, especially in boreal forests which have been in a minority in such investigation. We measured forest floor, tree stem and shoot N2O exchange of three boreal tree species at the beginning of the growing season (13.4.-13.6.2015) at SMEAR II station in Hyytiälä, located in Southern Finland (61˚ 51´N, 24˚ 17´E, 181 a.s.l.). The fluxes were measured in silver birch (Betula pendula), downy birch (B. pubescens) and Norway spruce (Picea abies) on two sites with differing soil type and characteristics (paludified and mineral soil), vegetation cover and forest structure. The aim was to study the vertical profile of N2O fluxes at stem level and to observe temporal changes in N2O fluxes over the beginning of the growing season. The N2O exchange was determined using the static chamber technique and gas chromatographic analyses. Scaffold towers were used for measurements at multiple stem heights and at the canopy level. Overall, the N2O fluxes from the forest floor and trees at both sites were very small and close to the detection limit. The measured trees mainly emitted N2O from their stems and shoots, while the forest floor acted as a sink of N2O at the paludified site and as a small source of N2O at the mineral soil site. Stem emissions from all the trees at both sites were on average below 0.5 μg N2O m-2 of stem area h-1, and the shoot emissions varied between 0.2 and 0.5 ng N2O m-2 g-1 dry biomass. When the N2O fluxes were scaled up to the whole forest ecosystem, based on the tree biomass and stand density, the N2O emissions from birch and spruce trees at the paludified site

Recruiting Conventional Tree Architecture Models into State-of-the-Art LiDAR Mapping for Investigating Tree Growth Habits in Structure

Directory of Open Access Journals (Sweden)

Yi Lin

2018-02-01

Full Text Available Mensuration of tree growth habits is of considerable importance for understanding forest ecosystem processes and forest biophysical responses to climate changes. However, the complexity of tree crown morphology that is typically formed after many years of growth tends to render it a non-trivial task, even for the state-of-the-art 3D forest mapping technology—light detection and ranging (LiDAR. Fortunately, botanists have deduced the large structural diversity of tree forms into only a limited number of tree architecture models, which can present a-priori knowledge about tree structure, growth, and other attributes for different species. This study attempted to recruit Hallé architecture models (HAMs into LiDAR mapping to investigate tree growth habits in structure. First, following the HAM-characterized tree structure organization rules, we run the kernel procedure of tree species classification based on the LiDAR-collected point clouds using a support vector machine classifier in the leave-one-out-for-cross-validation mode. Then, the HAM corresponding to each of the classified tree species was identified based on expert knowledge, assisted by the comparison of the LiDAR-derived feature parameters. Next, the tree growth habits in structure for each of the tree species were derived from the determined HAM. In the case of four tree species growing in the boreal environment, the tests indicated that the classification accuracy reached 85.0%, and their growth habits could be derived by qualitative and quantitative means. Overall, the strategy of recruiting conventional HAMs into LiDAR mapping for investigating tree growth habits in structure was validated, thereby paving a new way for efficiently reflecting tree growth habits and projecting forest structure dynamics.

Analytical estimates and proof of the scale-free character of efficiency and improvement in Barabasi-Albert trees

Energy Technology Data Exchange (ETDEWEB)

Hernandez-Bermejo, B. [Departamento de Fisica, Universidad Rey Juan Carlos, Escuela Superior de Ciencias Experimentales y Tecnologia, Edificio Departamental II, Calle Tulipan S/N, 28933-Mostoles-Madrid (Spain)], E-mail: benito.hernandez@urjc.es; Marco-Blanco, J. [Departamento de Fisica, Universidad Rey Juan Carlos, Escuela Superior de Ciencias Experimentales y Tecnologia, Edificio Departamental II, Calle Tulipan S/N, 28933-Mostoles-Madrid (Spain); Romance, M. [Departamento de Matematica Aplicada, Universidad Rey Juan Carlos, Escuela Superior de Ciencias Experimentales y Tecnologia, Edificio Departamental II, Calle Tulipan S/N, 28933-Mostoles-Madrid (Spain)

2009-02-23

Estimates for the efficiency of a tree are derived, leading to new analytical expressions for Barabasi-Albert trees efficiency. These expressions are used to investigate the dynamic behaviour of such networks. It is proved that the preferential attachment leads to an asymptotic conservation of efficiency as the Barabasi-Albert trees grow.

Analytical estimates and proof of the scale-free character of efficiency and improvement in Barabasi-Albert trees

International Nuclear Information System (INIS)

Hernandez-Bermejo, B.; Marco-Blanco, J.; Romance, M.

2009-01-01

Estimates for the efficiency of a tree are derived, leading to new analytical expressions for Barabasi-Albert trees efficiency. These expressions are used to investigate the dynamic behaviour of such networks. It is proved that the preferential attachment leads to an asymptotic conservation of efficiency as the Barabasi-Albert trees grow

Uptake and Translocation of Manganese by Native Tree Species in a Constructed Wetland Treating Landfill Leachates

OpenAIRE

A. Snow; Abdel E. Ghaly

2007-01-01

A surface flow constructed wetland was used to treat stormwater runoff from surrounding watersheds which are comprised primarily of commercial properties and two former landfills. The uptake of manganese by red maple, white birch and red spruce trees growing under flooded soil conditions in the constructed wetland was compared to that of the same trees growing under well drained soil conditions in a nearby reference site. The seasonal variability of manganese and its distribution in different...

Millennium bim managing growing demand

OpenAIRE

Lopes, Francisca Barbosa Malpique de Paiva

2014-01-01

Millennium bim, the Mozambican operation of Millennium bcp group, was the Company selected to serve as background for the development of a teaching case in Marketing. This case is followed by a teaching note, and is intended to be used as a pedagogical tool in undergraduate and/or graduate programs. Even though Mozambique is still characterized by high financial exclusion, the number of people entering within the banking industry has been growing at a fast pace. Actually, the demand for fi...

Tree fern trunks facilitate seedling regeneration in a productive lowland temperate rain forest.

Science.gov (United States)

Gaxiola, Aurora; Burrows, Larry E; Coomes, David A

2008-03-01

Seedling regeneration on forest floors is often impaired by competition with established plants. In some lowland temperate rain forests, tree fern trunks provide safe sites on which tree species establish, and grow large enough to take root in the ground and persist. Here we explore the competitive and facilitative effects of two tree fern species, Cyathea smithii and Dicksonia squarrosa, on the epiphytic regeneration of tree species in nutrient-rich alluvial forests in New Zealand. The difficulties that seedlings have in establishing on vertical tree fern trunks were indicated by the following observations. First, seedling abundance was greatest on the oldest sections of tree fern trunks, near the base, suggesting that trunks gradually recruited more and more seedlings over time, but many sections of trunk were devoid of seedlings, indicating the difficulty of establishment on a vertical surface. Second, most seedlings were from small-seeded species, presumably because smaller seeds can easily lodge on tree fern trunks. Deer browsing damage was observed on 73% of epiphytic seedlings growing within 2 m of the ground, whereas few seedlings above that height were browsed. This suggests that tree ferns provide refugia from introduced deer, and may slow the decline in population size of deer-preferred species. We reasoned that tree ferns would compete with epiphytic seedlings for light, because below the tree fern canopy photosynthetically active radiation (PAR) was about 1% of above-canopy PAR. Frond removal almost tripled %PAR on the forest floor, leading to a significant increase in the height growth rate (HGR) of seedlings planted on the forest floor, but having no effects on the HGRs of epiphytic seedlings. Our study shows evidence of direct facilitative interactions by tree ferns during seedling establishment in plant communities associated with nutrient-rich soils.

Reviews and syntheses: on the roles trees play in building and plumbing the critical zone

Directory of Open Access Journals (Sweden)

S. L. Brantley

2017-11-01

Full Text Available Trees, the most successful biological power plants on earth, build and plumb the critical zone (CZ in ways that we do not yet understand. To encourage exploration of the character and implications of interactions between trees and soil in the CZ, we propose nine hypotheses that can be tested at diverse settings. The hypotheses are roughly divided into those about the architecture (building and those about the water (plumbing in the CZ, but the two functions are intertwined. Depending upon one's disciplinary background, many of the nine hypotheses listed below may appear obviously true or obviously false. (1 Tree roots can only physically penetrate and biogeochemically comminute the immobile substrate underlying mobile soil where that underlying substrate is fractured or pre-weathered. (2 In settings where the thickness of weathered material, H, is large, trees primarily shape the CZ through biogeochemical reactions within the rooting zone. (3 In forested uplands, the thickness of mobile soil, h, can evolve toward a steady state because of feedbacks related to root disruption and tree throw. (4 In settings where h ≪ H and the rates of uplift and erosion are low, the uptake of phosphorus into trees is buffered by the fine-grained fraction of the soil, and the ultimate source of this phosphorus is dust. (5 In settings of limited water availability, trees maintain the highest length density of functional roots at depths where water can be extracted over most of the growing season with the least amount of energy expenditure. (6 Trees grow the majority of their roots in the zone where the most growth-limiting resource is abundant, but they also grow roots at other depths to forage for other resources and to hydraulically redistribute those resources to depths where they can be taken up more efficiently. (7 Trees rely on matrix water in the unsaturated zone that at times may have an isotopic composition distinct from the gravity

Reviews and syntheses: on the roles trees play in building and plumbing the critical zone

Science.gov (United States)

Brantley, Susan L.; Eissenstat, David M.; Marshall, Jill A.; Godsey, Sarah E.; Balogh-Brunstad, Zsuzsanna; Karwan, Diana L.; Papuga, Shirley A.; Roering, Joshua; Dawson, Todd E.; Evaristo, Jaivime; Chadwick, Oliver; McDonnell, Jeffrey J.; Weathers, Kathleen C.

2017-11-01

Trees, the most successful biological power plants on earth, build and plumb the critical zone (CZ) in ways that we do not yet understand. To encourage exploration of the character and implications of interactions between trees and soil in the CZ, we propose nine hypotheses that can be tested at diverse settings. The hypotheses are roughly divided into those about the architecture (building) and those about the water (plumbing) in the CZ, but the two functions are intertwined. Depending upon one's disciplinary background, many of the nine hypotheses listed below may appear obviously true or obviously false. (1) Tree roots can only physically penetrate and biogeochemically comminute the immobile substrate underlying mobile soil where that underlying substrate is fractured or pre-weathered. (2) In settings where the thickness of weathered material, H, is large, trees primarily shape the CZ through biogeochemical reactions within the rooting zone. (3) In forested uplands, the thickness of mobile soil, h, can evolve toward a steady state because of feedbacks related to root disruption and tree throw. (4) In settings where h ≪ H and the rates of uplift and erosion are low, the uptake of phosphorus into trees is buffered by the fine-grained fraction of the soil, and the ultimate source of this phosphorus is dust. (5) In settings of limited water availability, trees maintain the highest length density of functional roots at depths where water can be extracted over most of the growing season with the least amount of energy expenditure. (6) Trees grow the majority of their roots in the zone where the most growth-limiting resource is abundant, but they also grow roots at other depths to forage for other resources and to hydraulically redistribute those resources to depths where they can be taken up more efficiently. (7) Trees rely on matrix water in the unsaturated zone that at times may have an isotopic composition distinct from the gravity-drained water that transits

[A review of the genomic and gene cloning studies in trees].

Science.gov (United States)

Yin, Tong-Ming

2010-07-01

Supported by the Department of Energy (DOE) of U.S., the first tree genome, black cottonwood (Populus trichocarpa), has been completely sequenced and publicly release. This is the milestone that indicates the beginning of post-genome era for forest trees. Identification and cloning genes underlying important traits are one of the main tasks for the post-genome-era tree genomic studies. Recently, great achievements have been made in cloning genes coordinating important domestication traits in some crops, such as rice, tomato, maize and so on. Molecular breeding has been applied in the practical breeding programs for many crops. By contrast, molecular studies in trees are lagging behind. Trees possess some characteristics that make them as difficult organisms for studying on locating and cloning of genes. With the advances in techniques, given also the fast growth of tree genomic resources, great achievements are desirable in cloning unknown genes from trees, which will facilitate tree improvement programs by means of molecular breeding. In this paper, the author reviewed the progress in tree genomic and gene cloning studies, and prospected the future achievements in order to provide a useful reference for researchers working in this area.

Digestion, growth performance and caecal fermentation in growing rabbits fed diets containing foliage of browse trees

Directory of Open Access Journals (Sweden)

S.H. Abu Hafsa

2016-12-01

Full Text Available This study aimed to evaluate the effect of feeding dried foliage (leaves and petioles of Acacia saligna, Leucaena leucocephala or Moringa oleifera on the performance, digestibility, N utilisation, caecal fermentation and microbial profiles in New Zealand White (NZW rabbits. One hundred weaned male NZW rabbits weighing 819.2±16.6 g and aged 35±1 d were randomly allocated into 4 groups of 25 rabbits each. Rabbits were fed on pelleted diets containing 70% concentrate mixture and 30% Egyptian berseem (Trifolium alexandrinum hay (Control diet or one of the other 3 experimental diets, where 50% of berseem hay was replaced with A. saligna (AS, L. leucocephala (LL or M. oleifera (MO. Compared to Control diet, decreases in dry matter (DM; P=0.004, organic matter (P=0.028, crude protein (CP; P=0.001, neutral detergent fibre (P=0.033 and acid detergent fibre (P=0.011 digestibility were observed with the AS diet. However, DM and CP digestibility were increased by 3% with the MO diet, and N utilisation was decreased (P<0.05 with AS. Rabbits fed AS and LL diets showed decreased (P=0.001 average daily gain by 39 and 7%, respectively vs. Control. Feed conversion was similar in Control and MO rabbits, whereas rabbits fed AS diet ate up to 45% more feed (P=0.002 than Control rabbits to gain one kg of body weight. Caecal ammonia-N was increased (P=0.002 with LL, while acetic acid was decreased (P=0.001 with AS diet vs. other treatments. Caecal E. coli and Lactobacillus spp. bacteria counts were decreased with MO by about 44 and 51%, respectively, vs. Control. In conclusion, under the study conditions, tree foliage from M. oleifera and L. leucocephala are suitable fibrous ingredients to be included up to 150 g/kg in the diets of growing rabbits, and can safely replace 50% of berseem hay in diets of NZW rabbits without any adverse effect on their growth performance. Foliage from M. oleifera had a better potential as a feed for rabbits than that from L

Calibration of the Diameter Distribution Derived from the Area-based Approach with Individual Tree-based Diameter Estimates Using the Airborne Laser Scanning

Science.gov (United States)

Xu, Q.; Hou, Z.; Maltamo, M.; Tokola, T.

2015-12-01

Diameter distributions of trees are important indicators of current forest stand structure and future dynamics. A new method was proposed in the study to combine the diameter distributions derived from the area-based approach (ABA) and the diameter distribution derived from the individual tree detection (ITD) in order to obtain more accurate forest stand attributes. Since dominant trees can be reliably detected and measured by the Lidar data via the ITD, the focus of the study is to retrieve the suppressed trees (trees that were missed by the ITD) from the ABA. Replacement and histogram matching were respectively employed at the plot level to retrieve the suppressed trees. Cut point was detected from the ITD-derived diameter distribution for each sample plot to distinguish dominant trees from the suppressed trees. The results showed that calibrated diameter distributions were more accurate in terms of error index and the entire growing stock estimates. Compared with the best performer between the ABA and the ITD, calibrated diameter distributions decreased the relative RMSE of the estimated entire growing stock, saw log and pulpwood fractions by 2.81%, 3.05% and 7.73% points respectively. Calibration improved the estimation of pulpwood fraction significantly, resulting in a negligible bias of the estimated entire growing stock.

ACHIEVEMENTS AND PERSPECTIVES ON STONE FRUIT GROWING ON SANDY SOILS

Directory of Open Access Journals (Sweden)

Anica Durău

2012-01-01

Full Text Available Climatic conditions in the sandy soils of southern Oltenia encourage cultivation of tree species in terms of applying specific technologies. Possibility of poor sandy soils fertile capitalization, earliness in 7- 10 days of fruit ripening , high yields and quality are the main factors supporting the development of fruit growing in the sandy soils of southern Oltenia. The main objectives of the research were to CCDCPN Dăbuleni. Establish and improve stone fruit species assortment, adapted to the stress of the sandy soils, establishment and evaluation of the influence of stress on trees and their influence on the size and quality of production, development of technological links (planting distances, forms management, fertilization, getting high and consistent annual production of high quality, containing low as pesticide residues, to establish a integrated health control program of the trees with emphasis on biotechnical. Research has shown good stone species behavior, and their recommended proportion is 75% of all fruit trees (peach 36%, 14% apricot, plum15%, sweet and sour cherry fruit growing 10% of the total area. Results on peach varieties revealed: ’Redhaven’, ’Suncrest’, ’Loring’ with yields ranging from (24.8 t / ha to 29.0 t/ha with maturation period from July to August, and varieties ’NJ 244’, ’Fayette’, ’Flacara’ with productions ranging from (19.7 t / ha to 23.0 t/ha with maturation period from August to September. The sweet cherry varieties ’Van’, ’Rainier’, ’Stella’, with yields ranging from 17. 2 to 24.4 t / ha. In the range studied sour cherry were found ’Oblacinska’ varieties of 11.0 t / ha, ’Cernokaia’ with 10.5 t / ha, ’Schatten Morelle’ with 9.1 t / ha. Optimum planting density and shape of the peach crown found that the highest yields of fruit are produced in the form of vertical cordon crown, with values ranging from 15.9 t / ha at a distance of 2 m, 10.3 t / ha at a distance

Effect of tree nuts on glycemic control in diabetes: a systematic review and meta-analysis of randomized controlled dietary trials.

Directory of Open Access Journals (Sweden)

Effie Viguiliouk

Full Text Available Tree nut consumption has been associated with reduced diabetes risk, however, results from randomized trials on glycemic control have been inconsistent.To provide better evidence for diabetes guidelines development, we conducted a systematic review and meta-analysis of randomized controlled trials to assess the effects of tree nuts on markers of glycemic control in individuals with diabetes.MEDLINE, EMBASE, CINAHL, and Cochrane databases through 6 April 2014.Randomized controlled trials ≥3 weeks conducted in individuals with diabetes that compare the effect of diets emphasizing tree nuts to isocaloric diets without tree nuts on HbA1c, fasting glucose, fasting insulin, and HOMA-IR.Two independent reviewer's extracted relevant data and assessed study quality and risk of bias. Data were pooled by the generic inverse variance method and expressed as mean differences (MD with 95% CI's. Heterogeneity was assessed (Cochran Q-statistic and quantified (I2.Twelve trials (n = 450 were included. Diets emphasizing tree nuts at a median dose of 56 g/d significantly lowered HbA1c (MD = -0.07% [95% CI:-0.10, -0.03%]; P = 0.0003 and fasting glucose (MD = -0.15 mmol/L [95% CI: -0.27, -0.02 mmol/L]; P = 0.03 compared with control diets. No significant treatment effects were observed for fasting insulin and HOMA-IR, however the direction of effect favoured tree nuts.Majority of trials were of short duration and poor quality.Pooled analyses show that tree nuts improve glycemic control in individuals with type 2 diabetes, supporting their inclusion in a healthy diet. Owing to the uncertainties in our analyses there is a need for longer, higher quality trials with a focus on using nuts to displace high-glycemic index carbohydrates.ClinicalTrials.gov NCT01630980.

Influence of tree age and variety on allometric characteristics and water use of Mangifera indica L. growing in plantation

NARCIS (Netherlands)

Oguntunde, P.G.; fasinmirin, J.T.; Van de Giesen, N.C.

2011-01-01

Data on water relations and growth characteristics of mango trees needed for productive plantation management are currently lacking in West Africa. Relationships between allometric properties and water use in mango trees were examined. In addition, the effects on allometric characteristics and xylem

Undergraduate Students’ Initial Ability in Understanding Phylogenetic Tree

Science.gov (United States)

Sa'adah, S.; Hidayat, T.; Sudargo, Fransisca

2017-04-01

The Phylogenetic tree is a visual representation depicts a hypothesis about the evolutionary relationship among taxa. Evolutionary experts use this representation to evaluate the evidence for evolution. The phylogenetic tree is currently growing for many disciplines in biology. Consequently, learning about the phylogenetic tree has become an important part of biological education and an interesting area of biology education research. Skill to understanding and reasoning of the phylogenetic tree, (called tree thinking) is an important skill for biology students. However, research showed many students have difficulty in interpreting, constructing, and comparing among the phylogenetic tree, as well as experiencing a misconception in the understanding of the phylogenetic tree. Students are often not taught how to reason about evolutionary relationship depicted in the diagram. Students are also not provided with information about the underlying theory and process of phylogenetic. This study aims to investigate the initial ability of undergraduate students in understanding and reasoning of the phylogenetic tree. The research method is the descriptive method. Students are given multiple choice questions and an essay that representative by tree thinking elements. Each correct answer made percentages. Each student is also given questionnaires. The results showed that the undergraduate students’ initial ability in understanding and reasoning phylogenetic tree is low. Many students are not able to answer questions about the phylogenetic tree. Only 19 % undergraduate student who answered correctly on indicator evaluate the evolutionary relationship among taxa, 25% undergraduate student who answered correctly on indicator applying concepts of the clade, 17% undergraduate student who answered correctly on indicator determines the character evolution, and only a few undergraduate student who can construct the phylogenetic tree.

Contemporary Trends in Farmer-Based Tree Management and ...

African Journals Online (AJOL)

This paper examines the contemporary trends in tree growing and management in the context of changing farmer livelihood systems in southeastern Nigeria. Data were collected in 1998-99 through a field survey involving interviews with 160 households drawn from 8 rural communities across the different agroecological ...

Urban tree species show the same hydraulic response to vapor pressure deficit across varying tree size and environmental conditions.

Directory of Open Access Journals (Sweden)

Lixin Chen

Full Text Available The functional convergence of tree transpiration has rarely been tested for tree species growing under urban conditions even though it is of significance to elucidate the relationship between functional convergence and species differences of urban trees for establishing sustainable urban forests in the context of forest water relations.We measured sap flux of four urban tree species including Cedrus deodara, Zelkova schneideriana, Euonymus bungeanus and Metasequoia glyptostroboides in an urban park by using thermal dissipation probes (TDP. The concurrent microclimate conditions and soil moisture content were also measured. Our objectives were to examine 1 the influence of tree species and size on transpiration, and 2 the hydraulic control of urban trees under different environmental conditions over the transpiration in response to VPD as represented by canopy conductance. The results showed that the functional convergence between tree diameter at breast height (DBH and tree canopy transpiration amount (E(c was not reliable to predict stand transpiration and there were species differences within same DBH class. Species differed in transpiration patterns to seasonal weather progression and soil water stress as a result of varied sensitivity to water availability. Species differences were also found in their potential maximum transpiration rate and reaction to light. However, a same theoretical hydraulic relationship between G(c at VPD = 1 kPa (G(cref and the G(c sensitivity to VPD (-dG(c/dlnVPD across studied species as well as under contrasting soil water and R(s conditions in the urban area.We concluded that urban trees show the same hydraulic regulation over response to VPD across varying tree size and environmental conditions and thus tree transpiration could be predicted with appropriate assessment of G(cref.

Urban tree species show the same hydraulic response to vapor pressure deficit across varying tree size and environmental conditions.

Science.gov (United States)

Chen, Lixin; Zhang, Zhiqiang; Ewers, Brent E

2012-01-01

The functional convergence of tree transpiration has rarely been tested for tree species growing under urban conditions even though it is of significance to elucidate the relationship between functional convergence and species differences of urban trees for establishing sustainable urban forests in the context of forest water relations. We measured sap flux of four urban tree species including Cedrus deodara, Zelkova schneideriana, Euonymus bungeanus and Metasequoia glyptostroboides in an urban park by using thermal dissipation probes (TDP). The concurrent microclimate conditions and soil moisture content were also measured. Our objectives were to examine 1) the influence of tree species and size on transpiration, and 2) the hydraulic control of urban trees under different environmental conditions over the transpiration in response to VPD as represented by canopy conductance. The results showed that the functional convergence between tree diameter at breast height (DBH) and tree canopy transpiration amount (E(c)) was not reliable to predict stand transpiration and there were species differences within same DBH class. Species differed in transpiration patterns to seasonal weather progression and soil water stress as a result of varied sensitivity to water availability. Species differences were also found in their potential maximum transpiration rate and reaction to light. However, a same theoretical hydraulic relationship between G(c) at VPD = 1 kPa (G(cref)) and the G(c) sensitivity to VPD (-dG(c)/dlnVPD) across studied species as well as under contrasting soil water and R(s) conditions in the urban area. We concluded that urban trees show the same hydraulic regulation over response to VPD across varying tree size and environmental conditions and thus tree transpiration could be predicted with appropriate assessment of G(cref).

Trees as indicators of subterranean water flow from a retired radioactive waste disposal site

International Nuclear Information System (INIS)

Rickard, W.H.; Kirby, L.J.

1987-01-01

Tree sampling helped locate a subterranean flow of tritiated water from a low-level radioactive waste disposal site that had not been detected by well water monitoring alone. Deciduous trees growing in a natural forest on the hillsides downslope from the site were sampled for the presence of tritiated water in sap of maple trees and in leaf water extracted from oak and hickory trees. Elevated concentrations of 3 H were detected in the leaf water extracted from several trees located 50 m downslope from the western boundary of the fenced exclusion zone. A 3-m-deep well drilled near these trees indicated that the source of tritiated water was a narrow zone of subterranean flow

A Survival Model for Shortleaf Pine Tress Growing in Uneven-Aged Stands

Science.gov (United States)

Thomas B. Lynch; Lawrence R. Gering; Michael M. Huebschmann; Paul A. Murphy

1999-01-01

A survival model for shortleaf pine (Pinus echinata Mill.) trees growing in uneven-aged stands was developed using data from permanently established plots maintained by an industrial forestry company in western Arkansas. Parameters were fitted to a logistic regression model with a Bernoulli dependent variable in which "0" represented...

Removal of 4-chlorobenzoic acid from spiked hydroponic solution by willow trees (Salix viminalis)

DEFF Research Database (Denmark)

Deavers, K.; Macek, T.; Karlson, U.

2010-01-01

. Methods The removal of 4-CBA by willow trees was investigated with intact, septic willow trees growing in hydroponic solution and with sterile cell suspensions at concentrations of 5 mg/L and 50 mg/L 4-CBA. Nutrient solutions with different levels of ammonium and nitrate were prepared to achieve different...

Evaluating the use of strontium isotopes in tree rings to record the isotopic signal of dust deposited on the Wasatch Mountains

International Nuclear Information System (INIS)

Miller, Olivia L.; Solomon, Douglas Kip; Fernandez, Diego P.; Cerling, Thure E.; Bowling, David R.

2014-01-01

Highlights: • Dust was a major contributor of Sr to soil and tree rings over Sr poor bedrocks. • Tree rings were evaluated for their use as a record of dust strontium isotope history. • The isotopic signal of dust deposited on the Wasatch Mountains changed over the past ∼75 years. - Abstract: Dust cycling from the Great Basin to the Rocky Mountains is an important component of ecological and hydrological processes. We investigated the use of strontium (Sr) concentrations and isotope ratios ( 87 Sr/ 86 Sr) in tree rings as a proxy for dust deposition. We report Sr concentrations and isotope ratios ( 87 Sr/ 86 Sr) from atmospherically deposited dust, soil, bedrock, and tree rings from the Wasatch Mountains to investigate provenance of dust landing on the Wasatch Mountains and to determine if a dust Sr record is preserved in tree rings. Trees obtained a majority of their Sr from dust, making them a useful record of dust source and deposition. Dust contributions of Sr to soils were more than 94% over quartzite, 63% over granodiorite, and 50% over limestone. Dust contributions of Sr to trees were more than 85% in trees growing over quartzite, 55% over granodiorite, and between 0% and 92% over limestone. These findings demonstrate that a dust signal was preserved in some tree rings and reflects how Sr from dust and bedrock mixes within the soil. Trees growing over quartzite were most sensitive to dust. Changes in Sr isotope ratios for a tree growing over quartzite were interpreted as changes in dust source over time. This work has laid the foundation for using tree rings as a proxy for dust deposition over time

Variability in urban soils influences the health and growth of native tree seedlings

Science.gov (United States)

Clara C. Pregitzer; Nancy F. Sonti; Richard A. Hallett

2016-01-01

Reforesting degraded urban landscapes is important due to the many benefits urban forests provide. Urban soils are highly variable, yet little is known about how this variability in urban soils influences tree seedling performance and survival. We conducted a greenhouse study to assess health, growth, and survival of four native tree species growing in native glacial...

Hypoglycin A concentrations in seeds of Acer pseudoplatanus trees growing on atypical myopathy-affected and control pastures.

Science.gov (United States)

Unger, L; Nicholson, A; Jewitt, E M; Gerber, V; Hegeman, A; Sweetman, L; Valberg, S

2014-01-01

Hypoglycin A, found in seeds of Acer negundo, appears to cause seasonal pasture myopathy (SPM) in North America and is implicated in atypical myopathy (AM) in Europe. Acer negundo is uncommon in Europe. Thus, the potential source of hypoglycin A in Europe is unknown. We hypothesized that seeds of Acer pseudoplatanus were the source of hypoglycin A in Europe. Our objective was to determine the concentration of hypoglycin A in seeds of A. pseudoplatanus trees located in pastures where previous cases of AM had occurred. None. University of Berne records were searched to retrospectively identify 6 farms with 10 AM cases and 11 suspected AM deaths between 2007 and 2011. During October 2012, A. pseudoplatanus seeds were collected from 2 to 6 trees per pasture on 6 AM farms (7 pastures) from trees in or close to 2 pastures on 2 control farms where AM had not been previously reported. Hypoglycin A in seeds was analyzed by GC-MS. Acer pseudoplatanus trees were identified on all AM pastures. Hypoglycin A was detected in all A. pseudoplatanus seeds in highly variable concentrations ranging from 0.04 to 2.81 μg/mg (mean 0.69) on AM farms and 0.10 to 9.12 μg/mg (mean 1.59) on control farms. Preventing horses from grazing pastures containing A. pseudoplatanus seeds during late fall and early spring might be the best means to prevent AM. Copyright © 2014 by the American College of Veterinary Internal Medicine.

Effects of tree species on soil properties in a forest of the Northeastern United States

NARCIS (Netherlands)

Dijkstra, F.A.

2001-01-01

Large differences in soil pH and available Ca in the surface soil exist among tree species growing in a mixed hardwood forest in northwestern Connecticut. The observed association between tree species and specific soil chemical properties within mixed-species stands implies that changes in

Species-specific growth responses to climate variations in understory trees of a Central African rain forest

NARCIS (Netherlands)

Couralet, C.; Sterck, F.J.; Sass-Klaassen, U.; Acker, Van J.; Beekman, H.

2010-01-01

Basic knowledge of the relationships between tree growth and environmental variables is crucial for understanding forest dynamics and predicting vegetation responses to climate variations. Trees growing in tropical areas with a clear seasonality in rainfall often form annual growth rings. In the

Utilization and transfer of forest genetic resources

DEFF Research Database (Denmark)

Koskela, Jarkko; Vinceti, Barbara; Dvorak, William

2014-01-01

to complement new research approaches. Currently, seed of boreal and temperate trees for reforestation purposes are largely obtained from improved sources. The situation is similar for fast growing tropical and subtropical trees grown in plantations, but in the case of tropical hardwoods and many agroforestry...

Sustainable cultivation of broadleaved trees in a recycling community

International Nuclear Information System (INIS)

Christersson, L.

1996-01-01

In the future, with problems of global warming and acidification and with an increasing need to recirculate wastes of the community in an ecologically acceptable and economically sound manner, the cultivation of broadleaved species (birch, aspen, poplar, alder and willow in particular) on suitable forest land and on former agricultural land is of utmost interest if following the recycling philosophy. The wood produced could be used primarily for short fibres and for energy. Also of interest is the production of methanol, biogas and electricity, chipboard and laminates, in the context of a forest industry concerned with the further development of the raw materials. The main advantages of cultivating fast-growing, broadleaved trees on former agricultural land are that: * in Sweden it has been shown possible to produce 10-12 tonnes of dry matter of woody biomass per hectare and year by cultivating willows and hybrid poplars, * in such plantations, the energy efficiency ratio will be 1 to 15-20, meaning that for every energy unit used, 15-20 can be harvested, and * some residual products from society, such as sludges, ashes, and wastewaters can be used as fertilizers in such plantations. 16 refs

Concurrent Operations of O2-Tree on Shared Memory Multicore Architectures

OpenAIRE

Daniel Ohene-Kwofie; E. J. Otoo1, Gideon Nimako

2014-01-01

Modern computer architectures provide high performance computing capability by having multiple CPU cores. Such systems are also typically associated with very large main-memory capacities, thereby allowing them to be used for fast processing of in-memory database applications. However, most of the concurrency control mechanism associated with the index structures of these memory resident databases do not scale well, under high transaction rates. This paper presents the O2-Tree, a fast main me...

Rapid decay of tree-community composition in Amazonian forest fragments

Science.gov (United States)

Laurance, William F.; Nascimento, Henrique E. M.; Laurance, Susan G.; Andrade, Ana; Ribeiro, José E. L. S.; Giraldo, Juan Pablo; Lovejoy, Thomas E.; Condit, Richard; Chave, Jerome; Harms, Kyle E.; D'Angelo, Sammya

2006-01-01

Forest fragmentation is considered a greater threat to vertebrates than to tree communities because individual trees are typically long-lived and require only small areas for survival. Here we show that forest fragmentation provokes surprisingly rapid and profound alterations in Amazonian tree-community composition. Results were derived from a 22-year study of exceptionally diverse tree communities in 40 1-ha plots in fragmented and intact forests, which were sampled repeatedly before and after fragment isolation. Within these plots, trajectories of change in abundance were assessed for 267 genera and 1,162 tree species. Abrupt shifts in floristic composition were driven by sharply accelerated tree mortality and recruitment within ≈100 m of fragment margins, causing rapid species turnover and population declines or local extinctions of many large-seeded, slow-growing, and old-growth taxa; a striking increase in a smaller set of disturbance-adapted and abiotically dispersed species; and significant shifts in tree size distributions. Even among old-growth trees, species composition in fragments is being restructured substantially, with subcanopy species that rely on animal seed-dispersers and have obligate outbreeding being the most strongly disadvantaged. These diverse changes in tree communities are likely to have wide-ranging impacts on forest architecture, canopy-gap dynamics, plant–animal interactions, and forest carbon storage. PMID:17148598

Absorption, distribution and utilization of soil-applied 10B in apple trees

International Nuclear Information System (INIS)

Peng Futian; He Chengshun; Gu Manru

1998-01-01

10 B utilization rate was 7.0% and 10 B distribution rate in roots, trunks and newly emerged organs of pot cultured apple tree (cv. 'liao fu'/Malus ptunifolia Borkh.) was 24.4%, 46.6% and 29.0%, respectively, in one month after soil-application of 10 B during shoot rapid growth period. As the aerial newly emerged organs were concerned, Bdff% in long shoots and its leaves were higher than that in other shoots and leaves, suggesting that long shoots and its leaves had stronger ability of up taking 10 B. At beginning of boron application, total boron amount and Bdff% in leaves increased fast, but 10 B accumulating speed in shoot, particularly in its cortex, was higher than that in leaves in the later growing season, indicating that distribution center changed with growing period. The reserved boron in root and trunk played a mediative role in boron supply to newly emerged organs, a part of reserved mobile boron could transport to newly emerged organs when roots could not absorb any boron. With soil-applied 10 B of 2μg·g -1 in autumn, Bdff% in soil was found less than 5% in the spring of the third year, but Bdff% in newly emerged organs was still 20%∼30%, which suggested that a part of reserved 10 B could be reused

Genome sequence of Ensifer arboris strain LMG 14919T; a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan

OpenAIRE

Reeve, Wayne; Tian, Rui; Bräu, Lambert; Goodwin, Lynne; Munk, Christine; Detter, Chris; Tapia, Roxanne; Han, Cliff; Liolios, Konstantinos; Huntemann, Marcel; Pati, Amrita; Woyke, Tanja; Mavrommatis, Konstantinos; Markowitz, Victor; Ivanova, Natalia

2013-01-01

Ensifer arboris LMG 14919T is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of several species of legume trees. LMG 14919T was isolated in 1987 from a nodule recovered from the roots of the tree Prosopis chilensis growing in Kosti, Sudan. LMG 14919T is highly effective at fixing nitrogen with P. chilensis (Chilean mesquite) and Acacia senegal (gum Arabic tree or gum acacia). LMG 14919T does not nodulate the tree Leuce...

De-icing salt contamination reduces urban tree performance in structural soil cells.

Science.gov (United States)

Ordóñez-Barona, Camilo; Sabetski, Vadim; Millward, Andrew A; Steenberg, James

2018-03-01

Salts used for de-icing roads and sidewalks in northern climates can have a significant impact on water quality and vegetation. Sub-surface engineering systems, such as structural soil cells, can regulate water runoff and pollutants, and provide the necessary soil volume and irrigation to grow trees. However, the ability of such systems to manage de-icing salt contamination, and the impact of this contamination on the trees growing in them, have not been evaluated. We report on an field investigation of de-icing salt contamination in structural cells in two street-revitalization projects in Toronto, Canada, and the impact of this contamination on tree performance. We analyzed soil chemistry and collected tree attributes; these data were examined together to understand the effect of salinity on tree mortality rates and foliar condition. Data collected from continuous soil salinity loggers from April to June for one of the two sites were used to determine whether there was a long-term accumulation of salts in the soils. Results for both sites indicate that both sites displayed high salinity and alkalinity, with levels elevated beyond those suggested before those reported to cause negative tree effects. For one site, trees that were alive and trees that had a better foliar condition had significantly lower levels of soil salinity and alkalinity than other trees. High salinity and alkalinity in the soil were also associated with lower nutrient levels for both sites. Although tests for salinity accumulation in the soils of one site were negative, a longer monitoring of the soil conditions within the soil cells is warranted. Despite structural cells being increasingly utilized for their dual role in storm-water management and tree establishment, there may be a considerable trade-off between storm-water management and urban-forest function in northern climates where de-icing salt application continues to be commonplace. Copyright © 2017 Elsevier Ltd. All rights reserved.

Lightning Fast and Space Efficient Inequality Joins

KAUST Repository

Khayyat, Zuhair

2015-09-01

Inequality joins, which join relational tables on inequality conditions, are used in various applications. While there have been a wide range of optimization methods for joins in database systems, from algorithms such as sort-merge join and band join, to various indices such as B+-tree,R*-tree and Bitmap, inequality joins have received little attention and queries containing such joins are usually very slow. In this paper, we introduce fast inequality join algorithms. We put columns to be joined in sorted arrays and we use permutation arrays to encode positions of tuples in one sorted array w.r.t. the other sorted array. In contrast to sort-merge join, we use space effcient bit-arrays that enable optimizations, such as Bloom filter indices, for fast computation of the join results. We have implemented a centralized version of these algorithms on top of PostgreSQL, and a distributed version on top of Spark SQL. We have compared against well known optimization techniques for inequality joins and show that our solution is more scalable and several orders of magnitude faster.

Lightning fast and space efficient inequality joins

KAUST Repository

Khayyat, Zuhair

2015-09-01

Inequality joins, which join relational tables on inequality conditions, are used in various applications. While there have been a wide range of optimization methods for joins in database systems, from algorithms such as sort-merge join and band join, to various indices such as B+-tree, R*-tree and Bitmap, inequality joins have received little attention and queries containing such joins are usually very slow. In this paper, we introduce fast inequality join algorithms. We put columns to be joined in sorted arrays and we use permutation arrays to encode positions of tuples in one sorted array w.r.t. the other sorted array. In contrast to sort-merge join, we use space efficient bit-arrays that enable optimizations, such as Bloom filter indices, for fast computation of the join results. We have implemented a centralized version of these algorithms on top of PostgreSQL, and a distributed version on top of Spark SQL. We have compared against well known optimization techniques for inequality joins and show that our solution is more scalable and several orders of magnitude faster.

Lightning fast and space efficient inequality joins

KAUST Repository

Khayyat, Zuhair; Lucia, William; Singh, Meghna; Ouzzani, Mourad; Papotti, Paolo; Quiané -Ruiz, Jorge-Arnulfo; Tang, Nan; Kalnis, Panos

2015-01-01

Inequality joins, which join relational tables on inequality conditions, are used in various applications. While there have been a wide range of optimization methods for joins in database systems, from algorithms such as sort-merge join and band join, to various indices such as B+-tree, R*-tree and Bitmap, inequality joins have received little attention and queries containing such joins are usually very slow. In this paper, we introduce fast inequality join algorithms. We put columns to be joined in sorted arrays and we use permutation arrays to encode positions of tuples in one sorted array w.r.t. the other sorted array. In contrast to sort-merge join, we use space efficient bit-arrays that enable optimizations, such as Bloom filter indices, for fast computation of the join results. We have implemented a centralized version of these algorithms on top of PostgreSQL, and a distributed version on top of Spark SQL. We have compared against well known optimization techniques for inequality joins and show that our solution is more scalable and several orders of magnitude faster.

Polychlorinated biphenyls in tree bark near a former manufacturing plant in Anniston, Alabama.

Science.gov (United States)

Hermanson, Mark H; Johnson, Glenn W

2007-05-01

Tree bark samples were collected to identify the relative amounts and congener profiles of atmospheric polychlorinated biphenyls dissolved into bark lipids from the gas phase in Anniston, Alabama, USA, where PCBs were manufactured from the 1920s until 1971. The area is heavily contaminated with PCBs: At least 4550 metric tons (mt) of PCB and 14000 mt of PCB distillation residue, known as Montar, remain buried in two landfills near the plant site. A minimum of 20.5 mt of PCBs were emitted to the atmosphere by the plant between 1953 and 1971 based on emissions figures for 1970. Bark results show that total PCB concentrations range over more than three orders of magnitude from 171927 ng/g lipid near the plant/landfill area, dropping exponentially to 35 ng/g lipid at a distance of about 7 km. The exponential trend is highly correlated (r=-0.77) and significant (ptree started growing after 1971 showing that atmospheric PCB concentrations remained high after PCB production ended. All PCB congener profiles show persistent congeners 31+28, 52, 66, 153, 138, and 180. Congener profiles from trees growing near the plant/landfill all have somewhat similar profiles but those growing during PCB production show high molecular mass compounds not usually found in the atmosphere and not found in younger trees, even in the most concentrated sample. We believe that high-temperature Montar disposal released high molecular mass PCBs into the gas phase which were dissolved into older tree bark lipids.

Sugarbush management: a guide to maintaining tree health

Science.gov (United States)

David R. Houston; Douglas C. Allen; Denis Lachance

1990-01-01

Many pests and other stresses affect maple trees growing in a sugarbush. Some pests can markedly reduce sap quantity; others, although conspicuous, are not important. Stresses can result from activities by people and from natural phenomena. Recognizing problems and understanding the factors that contribute to their occurrence, development, and significance are...

Elevational patterns of Polylepis tree height (Rosaceae in the high Andes of Peru: role of human impact and climatic conditions

Directory of Open Access Journals (Sweden)

Michael eKessler

2014-05-01

Full Text Available We studied tree height in stands of high-Andean Polylepis forests in two cordilleras near Cuzco (Peru with respect to variations in human impact and climatic conditions, and compared air and soil temperatures between qualitatively defined dry and humid slopes. We studied 46 forest plots of 100 m2 of five Polylepis species at 3560-4680 m. We measured diameter at breast height (dbh and tree height in the stands (1229 trees in total, as well as air and soil temperatures in a subset of plots. The data was analysed combining plots of given species from different sites at the same elevation (±100 m. There was no elevational decrease of mean maximum tree height across the entire data set. On humid slopes, tree height decreased continuously with elevation, whereas on dry slopes it peaked at middle elevations. With mean maximum tree heights of 9 m at 4530 m on the humid slopes and of 13 m at 4650 m on the dry slopes, we here document the tallest high-elevation forests found so far worldwide. These highest stands grow under cold mean growing season air temperatures (3.6 °C and 3.8 °C on humid vs. dry slopes and mean growing season soil temperatures (5.1 °C vs. 4.6 °C. Mean annual air and soil temperature both decreased with elevation. Dry slopes had higher mean and maximum growing season air temperatures than humid slopes. Mean annual soil temperatures did not significantly differ and mean annual air temperatures only slightly differed between slopes. However, maximum air temperatures differed on average by 6.6 K between dry and humid slopes. This suggests that the differences in tree height between the two slopes are most likely due to differences in solar radiation as reflected by maximum air temperatures. Our study furthermore provides evidence that alpine Polylepis treelines grow under lower temperature conditions than global high-elevation treelines on average, suggesting that Polylepis species may have evolved special physiological adaptations

Environmental and biological controls of urban tree transpiration in the Upper Midwest

Science.gov (United States)

Peters, E. B.; McFadden, J.; Montgomery, R.

2009-12-01

Urban trees provide a variety of ecosystem services to urban and suburban areas, including carbon uptake, climate amelioration, energy reduction, and stormwater management. Tree transpiration, in particular, modifies urban water budgets by providing an alternative pathway for water after rain events. The relative importance of environmental and biological controls on transpiration are poorly understood in urban areas, yet these controls are important for quantifying and scaling up the ecosystem services that urban trees provide at landscape and regional scales and predicting how urban ecosystems will respond to climate changes. The objectives of our study were to quantify the annual cycle of tree transpiration in an urban ecosystem and to determine how different urban tree species and plant functional types respond to environmental drivers. We continuously measured whole-tree transpiration using thermal dissipation sap flow at four urban forest stands that were broadly representative of the species composition and tree sizes found in a suburban residential neighborhood of Minneapolis-Saint Paul, Minnesota. A total of 40 trees, representing different species, plant functional types, successional stages, and xylem anatomy, were sampled throughout the 2007 and 2008 growing seasons (April-November). At each site we monitored soil moisture, air temperature, and relative humidity continuously, and we measured leaf area index weekly. Urban tree transpiration was strongly correlated with diurnal changes in vapor pressure deficit and photosynthetically active radiation and with seasonal changes in leaf area index. We found that plant functional type better explained species differences in transpiration per canopy area than either successional stage or xylem anatomy, largely due to differences in canopy structure between conifer and broad-leaf deciduous trees. We also observed inter-annual differences in transpiration rates due to a mid-season drought and longer growing

ATLAS fast physics monitoring

Indian Academy of Sciences (India)

The ATLAS Collaboration has set up a framework to automatically process the rapidly growing dataset and produce performance and physics plots for the most interesting analyses. The system is designed to give fast feedback. The histograms are produced within hours of data reconstruction (2–3 days after data taking).

Tree species effect on the redistribution of soil metals

International Nuclear Information System (INIS)

Mertens, Jan; Van Nevel, Lotte; De Schrijver, An; Piesschaert, Frederic; Oosterbaan, Anne; Tack, Filip M.G.; Verheyen, Kris

2007-01-01

Phytostabilization of metals using trees is often promoted although the influence of different tree species on the mobilization of metals is not yet clear. Soil and biomass were sampled 33 years after planting four tree species (Quercus robur, Fraxinus excelsior, Acer pseudoplatanus, Populus 'Robusta') in a plot experiment on dredged sediment. Poplar took up high amounts of Cd and Zn and this was associated with increased Cd and Zn concentrations in the upper soil layer. The other species contained normal concentrations of Cd, Cu, Cr, Pb and Zn in their tissues. Oak acidified the soil more than the other species and caused a decrease in the concentration of metals in the upper soil layer. The pH under poplar was lower than expected and associated with high carbon concentrations in the top soil. This might be assigned to retardation of the litter decomposition due to elevated Cd and Zn concentrations in the litter. - Trees (33-year-old) growing on polluted dredged sediment have influenced the metal concentration in the upper soil layer and there was a significant tree species effect

Capturing characteristics of beryllium-7 in selected tree species

International Nuclear Information System (INIS)

Narazaki, Yukinori; Karube, Yoshiharu.

1997-01-01

With regard to 7 Be, a natural radioactive nuclide, the botanical capturing characteristics were compared between eight species of those trees which grow in a local district. The mechanism of such botanical capture by their leaves was discussed. The amounts of captured 7 Be were different by tree species. Higher radioactivities were found in the coniferous trees than in the broadleaf trees. The seasonal change of 7 Be radioactivity in leaves was significantly higher in winter and spring and lower in summer. Since airborne or fallout 7 Be particles stay on the upper face of leaves, the deposited amount depended on the surface area per weight of leaves particularly for evergreen trees. Because the 7 Be amount in leaves depended on the fallout capturing ability of leafs superficial skin as well as the cleaning effect of rain and the like, the radioactivity on the surface can change depending on the surface condition of leaves even in the case the levels of 7 Be fallout stayed the same. (author)

Tree-ring analysis of ancient baldcypress trees and subfossil wood

Science.gov (United States)

Stahle, David W.; Burnette, Dorian J.; Villanueva, Jose; Cerano, Julian; Fye, Falko K.; Griffin, R. Daniel; Cleaveland, Malcolm K.; Stahle, Daniel K.; Edmondson, Jesse R.; Wolff, Kathryn P.

2012-02-01

Ancient baldcypress trees found in wetland and riverine environments have been used to develop a network of exactly dated annual ring-width chronologies extending from the southeastern United States, across Mexico, and into western Guatemala. These chronologies are sensitive to growing season precipitation in spite of frequently flooded site conditions, and have been used to reconstruct moisture levels the southeastern United States and Mexico for over 1000 years. The El Nino/Southern Oscillation (ENSO) is a major influence on the climate reconstructions derived from these baldcypress chronologies, especially in Mexico where some of the most extreme reconstructed droughts occurred during El Nino events. In the Southeast, the ENSO influence on climate and tree growth changes sign from spring to summer, and this change in dynamical forcing is recorded by sub-seasonal chronologies of earlywood and latewood width. Most existing baldcypress chronologies have been extended with tree-ring data from "subfossil" wood recovered from surface and submerged deposits. Well-preserved subfossil logs have also been recovered in quantity from buried deposits of great age, and may permit development of long continuously dated Holocene chronologies and discontinuous "floating" Pleistocene chronologies. The extensive subfossil baldcypress swamp discovered 6 m below the streets of Washington D.C. was overrun by a transgression of the Potomac estuary, possibly during the previous super interglacial (marine OIS 5e), and provides direct evidence for one potential impact of unmitigated anthropogenic warming and sea level rise.

History of Tree Growth Declines Recorded in Old Trees at Two Sacred Sites in Northern China.

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Li, Yan; Zhang, Qi-Bin

2017-01-01

Old forests are an important component in sacred sites, yet they are at risk of growth decline from ongoing global warming and increased human activities. Growth decline, characterized by chronic loss of tree vigor, is not a recent phenomenon. Knowledge of past occurrence of declines is useful for preparing conservation plans because it helps understand if present day forests are outside the natural range of variation in tree health. We report a dendroecological study of growth decline events in the past two centuries at two sacred sites, Hengshan and Wutaishan, in Shanxi province of northern China. Tree rings collected at both sites show distinct periods of declining growth evident as narrow rings. These occurred in the 1830s in both sites, in the 1920s in Wutaishan and in the 2000s in Hengshan. By comparing the pattern of grow declines at the two sites, we hypothesize that resistance of tree growth to external disturbances is forest size dependent, and increased human activity might be a factor additional to climatic droughts in causing the recent strong growth decline at Hengshan Park. Despite these past declines, the forests at both sites have high resilience to disturbances as evidenced by the ability of trees to recover their growth rates to levels comparable to the pre-decline period. Managers should consider reducing fragmentation and restoring natural habitat of old forests, especially in areas on dry sites.

History of Tree Growth Declines Recorded in Old Trees at Two Sacred Sites in Northern China

Directory of Open Access Journals (Sweden)

Yan Li

2017-11-01

Full Text Available Old forests are an important component in sacred sites, yet they are at risk of growth decline from ongoing global warming and increased human activities. Growth decline, characterized by chronic loss of tree vigor, is not a recent phenomenon. Knowledge of past occurrence of declines is useful for preparing conservation plans because it helps understand if present day forests are outside the natural range of variation in tree health. We report a dendroecological study of growth decline events in the past two centuries at two sacred sites, Hengshan and Wutaishan, in Shanxi province of northern China. Tree rings collected at both sites show distinct periods of declining growth evident as narrow rings. These occurred in the 1830s in both sites, in the 1920s in Wutaishan and in the 2000s in Hengshan. By comparing the pattern of grow declines at the two sites, we hypothesize that resistance of tree growth to external disturbances is forest size dependent, and increased human activity might be a factor additional to climatic droughts in causing the recent strong growth decline at Hengshan Park. Despite these past declines, the forests at both sites have high resilience to disturbances as evidenced by the ability of trees to recover their growth rates to levels comparable to the pre-decline period. Managers should consider reducing fragmentation and restoring natural habitat of old forests, especially in areas on dry sites.

Water transport through tall trees: A vertically-explicit, analytical model of xylem hydraulic conductance in stems.

Science.gov (United States)

Couvreur, Valentin; Ledder, Glenn; Manzoni, Stefano; Way, Danielle A; Muller, Erik B; Russo, Sabrina E

2018-05-08

Trees grow by vertically extending their stems, so accurate stem hydraulic models are fundamental to understanding the hydraulic challenges faced by tall trees. Using a literature survey, we showed that many tree species exhibit continuous vertical variation in hydraulic traits. To examine the effects of this variation on hydraulic function, we developed a spatially-explicit, analytical water transport model for stems. Our model allows Huber ratio, stem-saturated conductivity, pressure at 50% loss of conductivity, leaf area, and transpiration rate to vary continuously along the hydraulic path. Predictions from our model differ from a matric flux potential model parameterized with uniform traits. Analyses show that cavitation is a whole-stem emergent property resulting from nonlinear pressure-conductivity feedbacks that, with gravity, cause impaired water transport to accumulate along the path. Because of the compounding effects of vertical trait variation on hydraulic function, growing proportionally more sapwood and building tapered xylem with height, as well as reducing xylem vulnerability only at branch tips while maintaining transport capacity at the stem base, can compensate for these effects. We therefore conclude that the adaptive significance of vertical variation in stem hydraulic traits is to allow trees to grow tall and tolerate operating near their hydraulic limits. This article is protected by copyright. All rights reserved.

MulRF: a software package for phylogenetic analysis using multi-copy gene trees.

Science.gov (United States)

Chaudhary, Ruchi; Fernández-Baca, David; Burleigh, John Gordon

2015-02-01

MulRF is a platform-independent software package for phylogenetic analysis using multi-copy gene trees. It seeks the species tree that minimizes the Robinson-Foulds (RF) distance to the input trees using a generalization of the RF distance to multi-labeled trees. The underlying generic tree distance measure and fast running time make MulRF useful for inferring phylogenies from large collections of gene trees, in which multiple evolutionary processes as well as phylogenetic error may contribute to gene tree discord. MulRF implements several features for customizing the species tree search and assessing the results, and it provides a user-friendly graphical user interface (GUI) with tree visualization. The species tree search is implemented in C++ and the GUI in Java Swing. MulRF's executable as well as sample datasets and manual are available at http://genome.cs.iastate.edu/CBL/MulRF/, and the source code is available at https://github.com/ruchiherself/MulRFRepo. ruchic@ufl.edu Supplementary data are available at Bioinformatics online. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Fruit-Growing in Latvia – Industry and Science

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Kaufmane Edīte

2017-06-01

Full Text Available In all times, fruit trees for family use have been grown at Latvian farms. Yet these fruits obtained market value only after the land ownership reform in 19th century. This facilitated rapid area increase of different fruit crops, allowing supply with fruits not only the local market, but also for export to the largest cities of Russia. Especially fast development of fruit-growing was observed during the first independent republic (1919–1940. The demand for planting material increased, and plants were imported from Western Europe. Choice of unsuitable cultivars and rootstocks was the main reason of the massive orchard area loss during the following severe winters. After the Second World War, the Soviet powers supported only the establishment of large orchards for processing needs, 200-300 ha, which were unsuitable for the Latvian climate and terrain. At the same time, numbers of allotment gardens rapidly increased and part of their produce was sold also on the market. After regaining of independence and private property, interest in fresh fruit and berry production for market, as well as processing, renewed. It was hindered by lack of continuity in experience and knowledge. Diversity of terrain, soils and climate all demand considerate choice of suitable orchard location and cultivars. Direct use of foreign experience often led to failure. At present, development of the fruit industry is most of all hindered by lack of qualified specialists of different levels, which does not allow to establish an appropriate consulting system. Cooperation of growers for easier marketing also is developing too slowly. Insufficient economic and market research does not allow to balance the demand with increase of plantation area, especially for large-scale processing and export, so strategic guidance of the fruit industry is not possible. Development of fruit-growing is hindered also by a lack of continuous long-term support to horticultural science. As a

Selective logging in tropical forests decreases the robustness of liana-tree interaction networks to the loss of host tree species.

Science.gov (United States)

Magrach, Ainhoa; Senior, Rebecca A; Rogers, Andrew; Nurdin, Deddy; Benedick, Suzan; Laurance, William F; Santamaria, Luis; Edwards, David P

2016-03-16

Selective logging is one of the major drivers of tropical forest degradation, causing important shifts in species composition. Whether such changes modify interactions between species and the networks in which they are embedded remain fundamental questions to assess the 'health' and ecosystem functionality of logged forests. We focus on interactions between lianas and their tree hosts within primary and selectively logged forests in the biodiversity hotspot of Malaysian Borneo. We found that lianas were more abundant, had higher species richness, and different species compositions in logged than in primary forests. Logged forests showed heavier liana loads disparately affecting slow-growing tree species, which could exacerbate the loss of timber value and carbon storage already associated with logging. Moreover, simulation scenarios of host tree local species loss indicated that logging might decrease the robustness of liana-tree interaction networks if heavily infested trees (i.e. the most connected ones) were more likely to disappear. This effect is partially mitigated in the short term by the colonization of host trees by a greater diversity of liana species within logged forests, yet this might not compensate for the loss of preferred tree hosts in the long term. As a consequence, species interaction networks may show a lagged response to disturbance, which may trigger sudden collapses in species richness and ecosystem function in response to additional disturbances, representing a new type of 'extinction debt'. © 2016 The Author(s).

Selective logging in tropical forests decreases the robustness of liana–tree interaction networks to the loss of host tree species

Science.gov (United States)

Magrach, Ainhoa; Senior, Rebecca A.; Rogers, Andrew; Nurdin, Deddy; Benedick, Suzan; Laurance, William F.; Santamaria, Luis; Edwards, David P.

2016-01-01

Selective logging is one of the major drivers of tropical forest degradation, causing important shifts in species composition. Whether such changes modify interactions between species and the networks in which they are embedded remain fundamental questions to assess the ‘health’ and ecosystem functionality of logged forests. We focus on interactions between lianas and their tree hosts within primary and selectively logged forests in the biodiversity hotspot of Malaysian Borneo. We found that lianas were more abundant, had higher species richness, and different species compositions in logged than in primary forests. Logged forests showed heavier liana loads disparately affecting slow-growing tree species, which could exacerbate the loss of timber value and carbon storage already associated with logging. Moreover, simulation scenarios of host tree local species loss indicated that logging might decrease the robustness of liana–tree interaction networks if heavily infested trees (i.e. the most connected ones) were more likely to disappear. This effect is partially mitigated in the short term by the colonization of host trees by a greater diversity of liana species within logged forests, yet this might not compensate for the loss of preferred tree hosts in the long term. As a consequence, species interaction networks may show a lagged response to disturbance, which may trigger sudden collapses in species richness and ecosystem function in response to additional disturbances, representing a new type of ‘extinction debt’. PMID:26936241

Ecophysiological differences in tree carbon gain and water use for two fast growing loblolly pine ideotypes that differ in carbon allocation

Science.gov (United States)

Maier, C. A.; Johnsen, K. H.; Dougherty, P.; Albaugh, T.; Patterson, S.

2013-12-01

We examined the ecophysiological basis for differences in growth efficiency and water-use for two contrasting Pinus taeda (L.) ideotypes: a ';broad-crown' (BC) and a ';narrow crown' (NC) clone, which allocate more growth to leaves and wood, respectively. Tree growth, above and belowground biomass production, fine root turnover, light use efficiency (LUE), and transpiration on a ground (Et) and leaf (EL) basis were measured periodically over eight years. Silviculture treatments were a control consisting of shearing and bedding following local commercial operations and a mulch treatment where chipped logging residue (C/N≈700) was incorporated into the soil during bedding at a rate of 25 Mg ha-1. We hypothesized that: 1) the NC and BC clone would display similar aboveground productivity in the control treatment, but because of lower leaf area and thus lower nitrogen demand, the NC would display higher productivity than BC on the mulch treatment, 2) the NC would have higher LUE, and 3) the NC clone would have lower Et and EL. There were no treatment, clone, or interaction effects on stemwood production. At age eight, standing stem biomass was 80.7 and 86.0 Mg ha-1 (p=0.33), for the NC and BC, respectively. However, there were significant clone effects on carbon allocation. The BC had greater foliage (BC: 8.1, NC: 6.6 Mg ha-1, se=0.2, p=0.01) and branch (BC: 15.0, NC: 12.4 Mg ha-1, se=0.4, p2mm) (BC: 9.7, NC: 11.23 Mg ha-1, se=0.2, Parea to conducting sapwood area (AL/AS) (BC: 0.175 m2 cm-2, NC: 0.150 m2 cm-2) than the NC clone. Growth efficiency, defined as annual stem increment per unit leaf area was 5.36 and 4.70 Mg ha-1 yr-1 LAI-1 in the NC and BC, respectively (parea, which confers greater nutrient use efficiency. In addition, the NC had significantly greater belowground carbon allocation, which could have long-term implications for soil carbon sequestration.

The knowledge of Bengkulu University’s forestry students of tree diversity in their campus

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STEFFANIE NURLIANA

2011-07-01

Full Text Available Abstract. Wiryono, Nurliana S. 2011. The knowledge of Bengkulu University’s forestry students of tree diversity in their campus. Nusantara Bioscience 3: 98-103. Indonesia is rich in plant diversity which has provided daily human needs for millennia. Knowledge of diverse plants and their uses is part of ecological knowledge essential for the survival of human. However, rapid deforestation has reduced plant diversity and caused the loss of traditional ecological knowledge. Furthermore, the increased availability of electronic entertainment has alienated young people from nature, causing further loss of ecological knowledge. The objective of this study was to know the ability of Bengkulu University’s forestry students to identify trees growing in the campus by local names and their genera. Knowing the name of trees growing in our environment is an indicator of concern for biodiversity. Results showed that forestry students had low ability to identify trees by local names and even lower by genera. Second-semester students could identify fewer trees than the higher-semester students, and the knowledge was not affected by student’s gender or profession of students’ parents. This low appreciation of plant diversity among young generation will have negative implication for biodiversity conservation efforts. Students should be brought closer to nature by increasing outdoor education.

A tree-parenchyma coupled model for lung ventilation simulation.

Science.gov (United States)

Pozin, Nicolas; Montesantos, Spyridon; Katz, Ira; Pichelin, Marine; Vignon-Clementel, Irene; Grandmont, Céline

2017-11-01

In this article, we develop a lung ventilation model. The parenchyma is described as an elastic homogenized media. It is irrigated by a space-filling dyadic resistive pipe network, which represents the tracheobronchial tree. In this model, the tree and the parenchyma are strongly coupled. The tree induces an extra viscous term in the system constitutive relation, which leads, in the finite element framework, to a full matrix. We consider an efficient algorithm that takes advantage of the tree structure to enable a fast matrix-vector product computation. This framework can be used to model both free and mechanically induced respiration, in health and disease. Patient-specific lung geometries acquired from computed tomography scans are considered. Realistic Dirichlet boundary conditions can be deduced from surface registration on computed tomography images. The model is compared to a more classical exit compartment approach. Results illustrate the coupling between the tree and the parenchyma, at global and regional levels, and how conditions for the purely 0D model can be inferred. Different types of boundary conditions are tested, including a nonlinear Robin model of the surrounding lung structures. Copyright © 2017 John Wiley & Sons, Ltd.

Seasonal variation in radiocesium concentrations in three tree species

International Nuclear Information System (INIS)

Garten, C.R. Jr.; Briese, L.A.; Sharitz, R.R.; Gentry, J.B.

1975-01-01

Radiocesium concentrations in leaves and stems of black willow (Salix nigra), wax myrtle (Myrica cerifera), and tag alder (Alnus serrulata) trees inhabiting a floodplain contaminated by production-reactor effluents were measured over 1 year. In willow and myrtle trees, leaf radiocesium levels were highest in the spring and declined during the growing season; stem levels remained relatively unchanged or exhibited a slight increase. Seasonal changes in alder tree parts depended on the site examined. The relationship among component parts was essentially consistent across species and collecting sites in the summer. The radiocesium concentrations in order of rank were: roots greater than or equal to leaves greater than stems. Species differences in component-part radiocesium levels were dependent on the part sampled and the collecting site examined. Mean soil to plant-part concentration factors in summer ranged from 0.9 to 7.6, and species means across leaves, stems, and roots averaged 2.1, 3.8, and 6.2 for alder, willow, and myrtle trees, respectively

Temporal variations of mobile carbohydrates in Abies fargesii at the upper tree limits.

Science.gov (United States)

Dang, H S; Zhang, K R; Zhang, Q F; Xu, Y M

2015-01-01

Low temperatures are associated high-altitude treelines, but the functional mechanism of treeline formation remains controversial. The relative contributions of carbon limitation (source activity) and growth limitation (sink activity) require more tests across taxa and regions. We examined temporal variations of mobile carbon supply in different tissues of Abies fargesii across treeline ecotones on north- and south-facing slopes of the Qinling Mountains, China. Non-structural carbohydrate (NSC) concentrations in tissues along the altitudinal gradient on both slopes changed significantly in the early and late growing season, but not in the mid-growing season, indicating the season-dependent carbon supply status. Late in the growing season on both slopes, trees at the upper limits had the highest NSC concentrations and total soluble sugars and lowest starch concentrations compared to trees at the lower elevations. NSC concentrations tended to increase in needles and branches throughout the growing season with increasing elevation on both slopes, but declined in roots and stems. NSC concentrations across sampling dates also indicated increases in needles and branches, and decreases in roots and stem with increasing elevation. Overall altitudinal trends of NSC in A. fargesii revealed no depletion of mobile carbon reserves at upper elevation limits, suggesting limitation of sink activity dominates tree life across treeline ecotones in both north- and south-facing slopes. Carbon reserves in storage tissues (especially roots) in the late growing season might also play an important role in winter survival and early growth in spring at upper elevations on both slopes, which define the uppermost limit of A. fargesii. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands.

Mapping growing stock volume and forest live biomass: a case study of the Polissya region of Ukraine

Science.gov (United States)

Bilous, Andrii; Myroniuk, Viktor; Holiaka, Dmytrii; Bilous, Svitlana; See, Linda; Schepaschenko, Dmitry

2017-10-01

Forest inventory and biomass mapping are important tasks that require inputs from multiple data sources. In this paper we implement two methods for the Ukrainian region of Polissya: random forest (RF) for tree species prediction and k-nearest neighbors (k-NN) for growing stock volume and biomass mapping. We examined the suitability of the five-band RapidEye satellite image to predict the distribution of six tree species. The accuracy of RF is quite high: ~99% for forest/non-forest mask and 89% for tree species prediction. Our results demonstrate that inclusion of elevation as a predictor variable in the RF model improved the performance of tree species classification. We evaluated different distance metrics for the k-NN method, including Euclidean or Mahalanobis distance, most similar neighbor (MSN), gradient nearest neighbor, and independent component analysis. The MSN with the four nearest neighbors (k = 4) is the most precise (according to the root-mean-square deviation) for predicting forest attributes across the study area. The k-NN method allowed us to estimate growing stock volume with an accuracy of 3 m3 ha-1 and for live biomass of about 2 t ha-1 over the study area.

Foliar additional nutrition in the fruit growing field

International Nuclear Information System (INIS)

Soare, M.; Borlan, Z.; Gavriluta, I.; Budoi, G.; Marinca, C.; Bandu, G.G.

1999-01-01

This paper presents data concerning the influence of foliar application of some types of complex foliar fertilizers under the conditions of SCPP Caransebes (Caras-Severin district). The composition of these nutrients fulfils the nutritional needs of the fruit growing species on the fruit yield obtained in orchards. The application of different types of foliar nutrients on plants teguments resulted in some significant yield increases for the two species that were studied: apple and plum tree. The novelty of this paper is represented by the apparent degrees of productive use in yields of the macro and micronutrients from foliar fertilizers, as well as the productive use degrees of nutrients present in soil and of the nutrients applied in soil (we took into account the mean values for the studied years). The apparent degrees of productive use (in yield increases) of the nutrients from complex foliar fertilizers applied on apple-trees and plum-trees generally exceed 100 %. They determine high levels of productive use of the nutrients from soil and foliar nutrients applied. The experimental data emphasize the ecological protection effect of the supplementary foliar fertilization for the yield stimulation especially on soils with light texture and sloping soils. Refs. 6 (author)

Automated tracking of the vascular tree on DSA images

International Nuclear Information System (INIS)

Alperin, N.; Hoffmann, K.R.; Doi, K.

1990-01-01

Determination of the vascular tree structure is important for reconstruction of three-dimensional vascular tree from biplane images, for assessment of the significance of a lesion, and for planning treatment for arteriovenous malformation. To automate these analyses, the authors of this paper are developing a method to determine the vascular tree structure from digital subtraction angiography (DSA) images. The authors have previously described a vessel tracking method, based on the double-square-box technique. To improve the tracking accuracy, they have developed and integrated with the previous method a connectivity test and guided-sector-search technique. The connectivity test, based on region growing techniques, eliminates tracking across nonvessel regions. The guided sector-search method incorporates information from a larger are of the image to guide the search for the next tracking point

Transforming clinical practice guidelines and clinical pathways into fast-and-frugal decision trees to improve clinical care strategies.

Science.gov (United States)

Djulbegovic, Benjamin; Hozo, Iztok; Dale, William

2018-02-27

Contemporary delivery of health care is inappropriate in many ways, largely due to suboptimal Q5 decision-making. A typical approach to improve practitioners' decision-making is to develop evidence-based clinical practice guidelines (CPG) by guidelines panels, who are instructed to use their judgments to derive practice recommendations. However, mechanisms for the formulation of guideline judgments remains a "black-box" operation-a process with defined inputs and outputs but without sufficient knowledge of its internal workings. Increased explicitness and transparency in the process can be achieved by implementing CPG as clinical pathways (CPs) (also known as clinical algorithms or flow-charts). However, clinical recommendations thus derived are typically ad hoc and developed by experts in a theory-free environment. As any recommendation can be right (true positive or negative), or wrong (false positive or negative), the lack of theoretical structure precludes the quantitative assessment of the management strategies recommended by CPGs/CPs. To realize the full potential of CPGs/CPs, they need to be placed on more solid theoretical grounds. We believe this potential can be best realized by converting CPGs/CPs within the heuristic theory of decision-making, often implemented as fast-and-frugal (FFT) decision trees. This is possible because FFT heuristic strategy of decision-making can be linked to signal detection theory, evidence accumulation theory, and a threshold model of decision-making, which, in turn, allows quantitative analysis of the accuracy of clinical management strategies. Fast-and-frugal provides a simple and transparent, yet solid and robust, methodological framework connecting decision science to clinical care, a sorely needed missing link between CPGs/CPs and patient outcomes. We therefore advocate that all guidelines panels express their recommendations as CPs, which in turn should be converted into FFTs to guide clinical care. © 2018 John Wiley

Rooting stem cuttings of northern red oak (Quercus rubra L.) utilizing hedged stump sprouts formed on recently felled trees

Science.gov (United States)

Matthew H. Gocke; Daniel J. Robinson

2010-01-01

The ability to root stem cuttings collected from hedged stump sprouts formed on recently felled trees was evaluated for 26 codominant northern red oak (Quercus rubra L.) trees growing in Durham County, NC. Sprouting occurred, the same year as felling, on 23 of the 26 tree stumps and sprout number was significantly and positively correlated with stump diameter. The...

Investigations into the water flow and water conduction in spruce trees

International Nuclear Information System (INIS)

Strack, S.; Unger, H.

1988-02-01

The water-flow systems in the xylem of healthy and ailing spruce trees, based on the distribution patterns of tritiated water (HTO), were compared. In case of the ailing tree a severely altered water-flow system was observed. Whereas in the healthy tree the injected HTO spread in the apex in a distinctly differentiated manner following the spiral pattern of the ligneous fibers, no comparable spreading pattern was detected in the ailing tree. Also the labeled water molecules distributed twice as fast in the ailing as in the healthy tree. We conclude that the water conducting cross section of the diseased tree is reduced. Indeed, heartwood formation was about 60% in the ailing as compared to 5-20% in healthy trees. The methods of determining water content in the annual rings are described. The tissue water of needles from the healthy tree showed a distinct gradation of tritium concentrations according to age. This finding suggests that there is an age specific stomatal regulation in the healthy but not in the diseased needles. Water potential measurements at various times during the vegetation period provided evidence of a tighter water budget in diseased trees; however, a chronically enhanced water stress was not evident. The role of pathological heartwood formation during the disease is discussed. (orig.) With 27 figs., 38 refs [de

Test of Tree Core Sampling for Screening of Toxic Elements in Soils from a Norwegian Site

DEFF Research Database (Denmark)

Nielsen, Mette Algreen; Rein, Arno; Legind, Charlotte Nielsen

2011-01-01

Tree core samples have been used to delineate organic subsurface plumes. In 2009 and 2010, samples were taken at trees growing on a former dump site in Norway and analyzed for arsenic (As), cadmium (Cd), chromium (Cr), copper (Cu), nickel (Ni), and zinc (Zn). Concentrations in wood were in averag...

Peri-Urban Matters. Changing Olive Growing Patterns in Central Italy

Directory of Open Access Journals (Sweden)

Anna Laura Palazzo

2017-04-01

Full Text Available For centuries, olive growing has played a major role in the central regions of Italy, with hectares of olive groves surrounding hill towns and hamlets as part of a strong deep-rooted farming tradition. With reference to Lazio and Abruzzo, this article makes use of historical documentation, geographical surveys and in-depth interviews with professionals and experts, in order to provide evidence of how olive growing, once of the mixed type, now with specialized cultivations, has somehow challenged the structural features of traditional landscapes. In some cases, this ancient farming tradition has been awarded the ‘Protected Designation of Origin Brand’ according to strict technical production policies. Besides intensive crops, today also practiced on flat ground, for some years now, olive trees have been cultivated by ‘hobby farmers’. This is frequent in fringe areas, threatened by urban sprawl, within small plots belonging to detached family homes conferring a sense of rural ‘revival’. Whether all these diverse settlement patterns are socially and economically sustainable is debatable. Definitely, such persistence in land use, which now and again can be read even as a material survival of certain tree specimens, allows for olive farming as an enduring cultural practice in the face of increasing urbanization.

Categorizing ideas about trees: a tree of trees.

Science.gov (United States)

Fisler, Marie; Lecointre, Guillaume

2013-01-01

The aim of this study is to explore whether matrices and MP trees used to produce systematic categories of organisms could be useful to produce categories of ideas in history of science. We study the history of the use of trees in systematics to represent the diversity of life from 1766 to 1991. We apply to those ideas a method inspired from coding homologous parts of organisms. We discretize conceptual parts of ideas, writings and drawings about trees contained in 41 main writings; we detect shared parts among authors and code them into a 91-characters matrix and use a tree representation to show who shares what with whom. In other words, we propose a hierarchical representation of the shared ideas about trees among authors: this produces a "tree of trees." Then, we categorize schools of tree-representations. Classical schools like "cladists" and "pheneticists" are recovered but others are not: "gradists" are separated into two blocks, one of them being called here "grade theoreticians." We propose new interesting categories like the "buffonian school," the "metaphoricians," and those using "strictly genealogical classifications." We consider that networks are not useful to represent shared ideas at the present step of the study. A cladogram is made for showing who is sharing what with whom, but also heterobathmy and homoplasy of characters. The present cladogram is not modelling processes of transmission of ideas about trees, and here it is mostly used to test for proximity of ideas of the same age and for categorization.

To live fast or not: growth, vigor and longevity of old-growth ponderosa pine and lodgepole pine trees

Energy Technology Data Exchange (ETDEWEB)

Kaufmann, M. R. [Forest Service, Fort Collins, CO (United States). Rocky Mountain Forest and Range Experiment Station

1996-01-01

Old ponderosa pine and lodgepole pine trees were studied to determine volume growth patterns in relation to leaf area. Ponderosa pine trees varied in age from 166 to 432 years and were about 77 inches in diameter; lodgepole pine trees ranged in age from 250 to 296 years and were 31 inches in diameter. Trees of both species had flat tops, heavy branches and foliage distribution characteristic of older trees. Annual volume increments were determined from crossdated radial increments measured on discs at four meter height intervals; leaf areas were determined based on leaf area/branch sapwood area ratios. Ponderosa pine volume growth was found to have been gradual at first, reaching a plateau that persisted for a century or more, followed by a rapid increase, and a sudden decrease in growth to less than one half of the earlier rate and persisting at these levels for several decades. In lodgepole pine growth decline was less frequent and less spectacular; growth in general was more even, with slight annual variations. Volume growth in the most recent years prior to felling weakly correlated with leaf area. Growth efficiencies were generally higher for trees having the lowest leaf areas. The fact that these persisted for many decades with low growth efficiencies suggests that defence mechanisms are more effective in old trees than in younger ones. 16 refs., 8 figs.

High trees increase sunflower seed predation by birds in an agricultural landscape of Israel

Directory of Open Access Journals (Sweden)

Jessica eSchäckermann

2014-07-01

Full Text Available Natural habitats in agricultural landscapes promote agro-ecosystem services but little is known about negative effects (dis-services derived by natural habitats such as crop seed predation. Birds are important seed predators and use high landscape structures to perch and hide. High trees in agricultural landscapes may therefore drive seed predation. We examined if the presence, the distance and the percentages of high trees (tree height >5 m and the percentages of natural habitat surrounding sunflower fields, increased seed predation by birds in Israel. At the field scale, we assessed seed predation across a sample grid of an entire field. At the landscape scale, we assessed seed predation at the field margins and interiors of 20 sunflower fields. Seed predation was estimated as the percentage of removed seeds from sunflower heads. Distances of sample points to the closest high tree and percentage of natural habitat and of high trees in a 1km radius surrounding the fields were measured.We found that seed predation increased with decreasing distance to the closest high tree at the field and landscape scale. At the landscape scale, the percentage of high trees and natural habitat did not increase seed predation. Seed predation in the fields increased by 37 %, with a maximum seed predation of 92 %, when a high tree was available within zero to 50 m to the sunflower fields. If the closest high tree was further away, seed predation was less than 5 %. Sunflower seed predation by birds can be reduced, when avoiding sowing sunflowers within a radius of 50 m to high trees. Farmers should plan to grow crops, not sensitive to bird seed predation, closer to trees to eventually benefit from ecosystem services provided by birds, such as predation of pest insects, while avoiding these locations for growing crops sensitive to bird seed predation. Such management recommendations are directing towards sustainable agricultural landscapes.

Pterocarpus marsupium Roxb. ofLeguminosae is a lofty tree ...

Indian Academy of Sciences (India)

The native natural strands of this tree are fast disappearing due to over exploitation. This has led to inclusion of this plant in the list of endangered species. Extracts of tender vegetative regions of this plant are used as remedy for diarrhoea, dysentery, fever and toothache. The aqueous infusion of the wood is believed to ...

A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality.

Science.gov (United States)

To, Thu-Hien; Jacox, Edwin; Ranwez, Vincent; Scornavacca, Celine

2015-11-14

Given a gene and a species tree, reconciliation methods attempt to retrieve the macro-evolutionary events that best explain the discrepancies between the two tree topologies. The DTL parsimonious approach searches for a most parsimonious reconciliation between a gene tree and a (dated) species tree, considering four possible macro-evolutionary events (speciation, duplication, transfer, and loss) with specific costs. Unfortunately, many events are erroneously predicted due to errors in the input trees, inappropriate input cost values or because of the existence of several equally parsimonious scenarios. It is thus crucial to provide a measure of the reliability for predicted events. It has been recently proposed that the reliability of an event can be estimated via its frequency in the set of most parsimonious reconciliations obtained using a variety of reasonable input cost vectors. To compute such a support, a straightforward but time-consuming approach is to generate the costs slightly departing from the original ones, independently compute the set of all most parsimonious reconciliations for each vector, and combine these sets a posteriori. Another proposed approach uses Pareto-optimality to partition cost values into regions which induce reconciliations with the same number of DTL events. The support of an event is then defined as its frequency in the set of regions. However, often, the number of regions is not large enough to provide reliable supports. We present here a method to compute efficiently event supports via a polynomial-sized graph, which can represent all reconciliations for several different costs. Moreover, two methods are proposed to take into account alternative input costs: either explicitly providing an input cost range or allowing a tolerance for the over cost of a reconciliation. Our methods are faster than the region based method, substantially faster than the sampling-costs approach, and have a higher event-prediction accuracy on

Patterns of diametric growth in stem-analyzed laurel trees (Cordia alliodora) in a Panamanian forest

Science.gov (United States)

Bernard R Parresol; Margaret S. Devall

2013-01-01

Based on cross-dated increment cores, yearly diameters of trees were reconstructed for 21 laurels (Cordia alliodora) growing in a natural secondary forest on Gigante Peninsula, Panama. From this sample of dominant-codominant trees, ages were 14–35 years with an average of 25 years. Growth typically slowed at 7 years old, indicating effects of...

Whole tree transportation system for timber processing depots

Science.gov (United States)

John Lancaster; Tom Gallagher; Tim  McDonald; Dana Mitchell

2016-01-01

The growing demand for alternative energy has led those who are interested in producing sustainable energy from renewable timber to devise new concepts to satisfy those demands. The concept of timber processing depots, where whole stem trees will be delivered for future processing into wood products and high quality energy fuel, has led to the re-evaluation of our...

Directional floral orientation in Joshua trees (Yucca brevifolia)

Science.gov (United States)

Steve Warren; L. Scott Baggett; Heather Warren

2016-01-01

Joshua tree (Yucca brevifolia Engelm.) is a large, arborescent member of the yucca genus. It is an endemic and visually dominant plant in portions of the Mojave Desert, USA. We document the unique and heretofore unreported directional orientation of its flower panicles. The flower panicles grow primarily at the tips of branches that are oriented to the south....

Growth strategies of tropical tree species: disentangling light and size effects.

Directory of Open Access Journals (Sweden)

Nadja Rüger

Full Text Available An understanding of the drivers of tree growth at the species level is required to predict likely changes of carbon stocks and biodiversity when environmental conditions change. Especially in species-rich tropical forests, it is largely unknown how species differ in their response of growth to resource availability and individual size. We use a hierarchical bayesian approach to quantify the impact of light availability and tree diameter on growth of 274 woody species in a 50-ha long-term forest census plot in Barro Colorado Island, Panama. Light reaching each individual tree was estimated from yearly vertical censuses of canopy density. The hierarchical bayesian approach allowed accounting for different sources of error, such as negative growth observations, and including rare species correctly weighted by their abundance. All species grew faster at higher light. Exponents of a power function relating growth to light were mostly between 0 and 1. This indicates that nearly all species exhibit a decelerating increase of growth with light. In contrast, estimated growth rates at standardized conditions (5 cm dbh, 5% light varied over a 9-fold range and reflect strong growth-strategy differentiation between the species. As a consequence, growth rankings of the species at low (2% and high light (20% were highly correlated. Rare species tended to grow faster and showed a greater sensitivity to light than abundant species. Overall, tree size was less important for growth than light and about half the species were predicted to grow faster in diameter when bigger or smaller, respectively. Together light availability and tree diameter only explained on average 12% of the variation in growth rates. Thus, other factors such as soil characteristics, herbivory, or pathogens may contribute considerably to shaping tree growth in the tropics.

Trees - a tool for landfill managers

International Nuclear Information System (INIS)

Josseaume, Marine

2009-01-01

When landfills are closed, they must be rehabilitated in accordance with the site redevelopment plan. Studies have been conducted for the purpose of planting various tree and shrub species on closed compartments. The purpose of growing this biomass is to produce energy. At Machecoul (Loire-Atlantique), a project was implemented in cooperation with many players, including the Horticultural Training College, Veolia Proprete and the intercommunal supervisory board of the Six-Pieces landfill. (authors)

Tree species Diversity in the Department of Forest Resources ...

African Journals Online (AJOL)

An inventory of trees (>10cm diameter at breast height (dbh)) growing within the premises (~1.2ha) of the Department of Forest Resources Management (DFRM), University of Ibadan, Nigeria, was conducted as a case study of the species quality (richness and diversity) and quantity (volume) found on the University campus.

Establishment of trees on minesoils during drought and wet years

International Nuclear Information System (INIS)

Larson, M.M.; Kost, D.A.; Vimmerstedt, J.P.

1995-01-01

In two studies, green ash (Fraxinus pennsylvania) and white pine (Pinus strobus) were planted on three minesoils (graded topsoil, ripped topsoil, and gray cast overburden). Mixtures of grasses and/or legumes were seeded at different times in relation to tree planting. In the first study, tree planting was followed by several week of drought; in the second, precipitation was above average for the first two growing seasons following planting. In the drought year, survival of green ash was influenced by minesoil type, herbaceous mixture, and herbaceous seeding time in relation to tree planting. Among minesoils, mean survival was highest (87%) on cast overburden. Seeding grasses the fall before planting resulted in poor ash survival (40% to 47%) compared with seeding at time of planting (82% to 85%). Ash survived well (81% to 94%) on legume-seeded plots. When tree planting was followed by two wet seasons, survival at 4 and 5 yr ranged from very good to excellent in all treatments. Total height of ash trees on cast overburden averaged 31% less than that of trees on topsoil, and 29% greater on legume-seeded subplots than trees on grass subplots, although herbaceous biomass was greater on legume subplots. The three minesoils proved unsuitable for white pine. 17 refs., 7 tabs

Sensitivity of tree ring growth to local and large-scale climate variability in a region of Southeastern Brazil

Science.gov (United States)

Venegas-González, Alejandro; Chagas, Matheus Peres; Anholetto Júnior, Claudio Roberto; Alvares, Clayton Alcarde; Roig, Fidel Alejandro; Tomazello Filho, Mario

2016-01-01

We explored the relationship between tree growth in two tropical species and local and large-scale climate variability in Southeastern Brazil. Tree ring width chronologies of Tectona grandis (teak) and Pinus caribaea (Caribbean pine) trees were compared with local (Water Requirement Satisfaction Index—WRSI, Standardized Precipitation Index—SPI, and Palmer Drought Severity Index—PDSI) and large-scale climate indices that analyze the equatorial pacific sea surface temperature (Trans-Niño Index-TNI and Niño-3.4-N3.4) and atmospheric circulation variations in the Southern Hemisphere (Antarctic Oscillation-AAO). Teak trees showed positive correlation with three indices in the current summer and fall. A significant correlation between WRSI index and Caribbean pine was observed in the dry season preceding tree ring formation. The influence of large-scale climate patterns was observed only for TNI and AAO, where there was a radial growth reduction in months preceding the growing season with positive values of the TNI in teak trees and radial growth increase (decrease) during December (March) to February (May) of the previous (current) growing season with positive phase of the AAO in teak (Caribbean pine) trees. The development of a new dendroclimatological study in Southeastern Brazil sheds light to local and large-scale climate influence on tree growth in recent decades, contributing in future climate change studies.

Growing trees in child brains: graph theoretical analysis of electroencephalography-derived minimum spanning tree in 5- and 7-year-old children reflects brain maturation.

Science.gov (United States)

Boersma, Maria; Smit, Dirk J A; Boomsma, Dorret I; De Geus, Eco J C; Delemarre-van de Waal, Henriette A; Stam, Cornelis J

2013-01-01

The child brain is a small-world network, which is hypothesized to change toward more ordered configurations with development. In graph theoretical studies, comparing network topologies under different conditions remains a critical point. Constructing a minimum spanning tree (MST) might present a solution, since it does not require setting a threshold and uses a fixed number of nodes and edges. In this study, the MST method is introduced to examine developmental changes in functional brain network topology in young children. Resting-state electroencephalography was recorded from 227 children twice at 5 and 7 years of age. Synchronization likelihood (SL) weighted matrices were calculated in three different frequency bands from which MSTs were constructed, which represent constructs of the most important routes for information flow in a network. From these trees, several parameters were calculated to characterize developmental change in network organization. The MST diameter and eccentricity significantly increased, while the leaf number and hierarchy significantly decreased in the alpha band with development. Boys showed significant higher leaf number, betweenness, degree and hierarchy and significant lower SL, diameter, and eccentricity than girls in the theta band. The developmental changes indicate a shift toward more decentralized line-like trees, which supports the previously hypothesized increase toward regularity of brain networks with development. Additionally, girls showed more line-like decentralized configurations, which is consistent with the view that girls are ahead of boys in brain development. MST provides an elegant method sensitive to capture subtle developmental changes in network organization without the bias of network comparison.

Multielemental analyses of tree rings by inductively coupled plasma mass spectrometry

International Nuclear Information System (INIS)

Hall, G.S.

1990-01-01

Inductively coupled plasma mass spectrometry (ICP-MS) was evaluated for major, minor, trace, and ultra-trace elemental analyses of individual tree rings. The samples were obtained from an old-growth Douglas fir growing near Mount St. Helens volcano, and from trees at various other North American sites. Eightly percent of elements from Li to U had detection limits in the solid (wood) below 8.0 ng g -1 . Two anomalous peaks occur in Mount St. Helens samples at A.D. 1478 and 1490 that closely correlate with past eruptions of the volcano. These results show that ICP-MS is a rapid and sensitive analytical method for multielemental analyses of individual tree rings. (author) 16 refs.; 2 figs.; 2 tabs

Personal Factors and Fast Food Consumption

OpenAIRE

Saraniya Devendra

2016-01-01

Asian peoples including Sri Lankans are generally fond of cooking food items in their homes. It is understandable that on the other hand, growing knowledge and adoption of western culture bring a modification in food consumption pattern among Sri Lankan families who lives in a particular city area. As such, it is useful to identify the Personal Factors (PF) that influence on Fast Food Consumption (FFC), since the Sri Lankans change their behavior to have fast foods of developed countries from...

CosmoBon, tree research team, for studying utilization of woody plant in space environment

Science.gov (United States)

Tomita-Yokotani, Kaori; Yamashita, Masamichi; Hashimoto, Hirofumi; Sato, Seigo; Baba, Keiichi; Chida, Yukari

2012-07-01

We are proposing to raise woody plants in space for several applications and plant science, as Tree research team, TRT. Trees produce excess oxygen, wooden materials for living cabin, and provide biomass for cultivating mushroom and insect as for the space agriculture. Excellent tree shapes which would be deeply related to wood formation improve quality of life under stressful environment in outer space. We have the serious problem about their size. Bonsai is one of the Japanese traditional arts. We have been investigating the tension wood formation under exotic gravitational environment using Bonsai. CosmoBon is the small tree Bonsai for our space experiment. The tension wood formation in CosmoBon was confirmed as the same as that in the natural trees. Our goal is to examine feasibility to grow various species of trees in space as bioresource for space agriculture.

317/319 Phytoremediation site monitoring report - 2009 growing season : final report.

Energy Technology Data Exchange (ETDEWEB)

Negri, C .N.; Benda, P. L.; Gopalakrishnan, G.; Energy Systems

2010-02-10

In 1999, Argonne National Laboratory (Argonne) designed and installed a series of engineered plantings consisting of a vegetative cover system and approximately 800 hybrid poplars and willows rooting at various predetermined depths. The plants were installed using various methods including Applied Natural Science's TreeWell{reg_sign} system. The goal of the installation was to protect downgradient surface and groundwater by intercepting the contaminated groundwater with the tree roots, removing moisture from the upgradient soil area, reducing water infiltration, preventing soil erosion, degrading and/or transpiring the residual volatile organic compounds (VOCs), and removing tritium from the subsoil and groundwater. This report presents the results of the monitoring activities conducted by Argonne's Energy Systems (ES) Division in the growing season of 2009. Monitoring of the planted trees began soon after the trees were installed in 1999 and has been conducted every summer since then. As the trees grew and consolidated their growth into the contaminated soil and groundwater, their exposure to the contaminants was progressively shown through tissue sampling. During the 2009 sampling campaign, VOC concentrations found in the French Drain area were in general consistent with or slightly lower than the 2008 results. Additionally, closely repeated, stand wide analyses showed contaminant fluctuations that may indicate short-term contaminant depletion in the area of interest of roots. This data will be useful to determine short-term removal rate by the trees. As in previous years, levels in the Hydraulic Control Area were close to background levels except for a few exceptions.

Loss of a highly conserved sterile alpha motif domain gene (WEEP) results in pendulous branch growth in peach trees.

Science.gov (United States)

Hollender, Courtney A; Pascal, Thierry; Tabb, Amy; Hadiarto, Toto; Srinivasan, Chinnathambi; Wang, Wanpeng; Liu, Zhongchi; Scorza, Ralph; Dardick, Chris

2018-05-15

Plant shoots typically grow upward in opposition to the pull of gravity. However, exceptions exist throughout the plant kingdom. Most conspicuous are trees with weeping or pendulous branches. While such trees have long been cultivated and appreciated for their ornamental value, the molecular basis behind the weeping habit is not known. Here, we characterized a weeping tree phenotype in Prunus persica (peach) and identified the underlying genetic mutation using a genomic sequencing approach. Weeping peach tree shoots exhibited a downward elliptical growth pattern and did not exhibit an upward bending in response to 90° reorientation. The causative allele was found to be an uncharacterized gene, Ppa013325 , having a 1.8-Kb deletion spanning the 5' end. This gene, dubbed WEEP , was predominantly expressed in phloem tissues and encodes a highly conserved 129-amino acid protein containing a sterile alpha motif (SAM) domain. Silencing WEEP in the related tree species Prunus domestica (plum) resulted in more outward, downward, and wandering shoot orientations compared to standard trees, supporting a role for WEEP in directing lateral shoot growth in trees. This previously unknown regulator of branch orientation, which may also be a regulator of gravity perception or response, provides insights into our understanding of how tree branches grow in opposition to gravity and could serve as a critical target for manipulating tree architecture for improved tree shape in agricultural and horticulture applications. Copyright © 2018 the Author(s). Published by PNAS.

The relationship between tree biodiversity and biomass dynamics changes with tropical forest succession.

Science.gov (United States)

Lasky, Jesse R; Uriarte, María; Boukili, Vanessa K; Erickson, David L; John Kress, W; Chazdon, Robin L

2014-09-01

Theory predicts shifts in the magnitude and direction of biodiversity effects on ecosystem function (BEF) over succession, but this theory remains largely untested. We studied the relationship between aboveground tree biomass dynamics (Δbiomass) and multiple dimensions of biodiversity over 8-16 years in eight successional rainforests. We tested whether successional changes in diversity-Δbiomass correlations reflect predictions of niche theories. Diversity-Δbiomass correlations were positive early but weak later in succession, suggesting saturation of niche space with increasing diversity. Early in succession, phylogenetic diversity and functional diversity in two leaf traits exhibited the strongest positive correlations with Δbiomass, indicating complementarity or positive selection effects. In mid-successional stands, high biodiversity was associated with greater mortality-driven biomass loss, i.e. negative selection effects, suggesting successional niche trade-offs and loss of fast-growing pioneer species. Our results demonstrate that BEF relationships are dynamic across succession, thus successional context is essential to understanding BEF in a given system. © 2014 John Wiley & Sons Ltd/CNRS.

A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction

Science.gov (United States)

De Oliveira Martins, Leonardo; Mallo, Diego; Posada, David

2016-01-01

Current phylogenomic data sets highlight the need for species tree methods able to deal with several sources of gene tree/species tree incongruence. At the same time, we need to make most use of all available data. Most species tree methods deal with single processes of phylogenetic discordance, namely, gene duplication and loss, incomplete lineage sorting (ILS) or horizontal gene transfer. In this manuscript, we address the problem of species tree inference from multilocus, genome-wide data sets regardless of the presence of gene duplication and loss and ILS therefore without the need to identify orthologs or to use a single individual per species. We do this by extending the idea of Maximum Likelihood (ML) supertrees to a hierarchical Bayesian model where several sources of gene tree/species tree disagreement can be accounted for in a modular manner. We implemented this model in a computer program called guenomu whose inputs are posterior distributions of unrooted gene tree topologies for multiple gene families, and whose output is the posterior distribution of rooted species tree topologies. We conducted extensive simulations to evaluate the performance of our approach in comparison with other species tree approaches able to deal with more than one leaf from the same species. Our method ranked best under simulated data sets, in spite of ignoring branch lengths, and performed well on empirical data, as well as being fast enough to analyze relatively large data sets. Our Bayesian supertree method was also very successful in obtaining better estimates of gene trees, by reducing the uncertainty in their distributions. In addition, our results show that under complex simulation scenarios, gene tree parsimony is also a competitive approach once we consider its speed, in contrast to more sophisticated models. PMID:25281847

A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction.

Science.gov (United States)

De Oliveira Martins, Leonardo; Mallo, Diego; Posada, David

2016-05-01

Current phylogenomic data sets highlight the need for species tree methods able to deal with several sources of gene tree/species tree incongruence. At the same time, we need to make most use of all available data. Most species tree methods deal with single processes of phylogenetic discordance, namely, gene duplication and loss, incomplete lineage sorting (ILS) or horizontal gene transfer. In this manuscript, we address the problem of species tree inference from multilocus, genome-wide data sets regardless of the presence of gene duplication and loss and ILS therefore without the need to identify orthologs or to use a single individual per species. We do this by extending the idea of Maximum Likelihood (ML) supertrees to a hierarchical Bayesian model where several sources of gene tree/species tree disagreement can be accounted for in a modular manner. We implemented this model in a computer program called guenomu whose inputs are posterior distributions of unrooted gene tree topologies for multiple gene families, and whose output is the posterior distribution of rooted species tree topologies. We conducted extensive simulations to evaluate the performance of our approach in comparison with other species tree approaches able to deal with more than one leaf from the same species. Our method ranked best under simulated data sets, in spite of ignoring branch lengths, and performed well on empirical data, as well as being fast enough to analyze relatively large data sets. Our Bayesian supertree method was also very successful in obtaining better estimates of gene trees, by reducing the uncertainty in their distributions. In addition, our results show that under complex simulation scenarios, gene tree parsimony is also a competitive approach once we consider its speed, in contrast to more sophisticated models. © The Author(s) 2014. Published by Oxford University Press on behalf of the Society of Systematic Biologists.

Estimation of Heavy Metals in Neem Tree Leaves along Katsina ...

African Journals Online (AJOL)

Widespread and growing use of medicinal plants has created public health challenges in terms of quality, safety and effectiveness. Using Atomic Absorption Spectrophotometer (AAS), concentrations of Ni, Zn, Mn, Cu, Cr and Pb, , were determined in samples of neem tree (Azadirachta indica) leaves obtained from Katsina, ...

The role of selected tree species in industrial sewage sludge/flotation tailing management.