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Sample records for factor analysis extracted

  1. A Unified Factors Analysis Framework for Discriminative Feature Extraction and Object Recognition

    Directory of Open Access Journals (Sweden)

    Ningbo Hao

    2016-01-01

    Full Text Available Various methods for feature extraction and dimensionality reduction have been proposed in recent decades, including supervised and unsupervised methods and linear and nonlinear methods. Despite the different motivations of these methods, we present in this paper a general formulation known as factor analysis to unify them within a common framework. During factor analysis, an object can be seen as being comprised of content and style factors, and the objective of feature extraction and dimensionality reduction is to obtain the content factor without style factor. There are two vital steps in factor analysis framework; one is the design of factor separating objective function, including the design of partition and weight matrix, and the other is the design of space mapping function. In this paper, classical Linear Discriminant Analysis (LDA and Locality Preserving Projection (LPP algorithms are improved based on factor analysis framework, and LDA based on factor analysis (FA-LDA and LPP based on factor analysis (FA-LPP are proposed. Experimental results show the superiority of our proposed approach in classification performance compared to classical LDA and LPP algorithms.

  2. Evaluating Exploratory Factor Analysis: Which Initial-Extraction Techniques Provide the Best Factor Fidelity?

    Science.gov (United States)

    Buley, Jerry L.

    1995-01-01

    States that attacks by communication scholars have cast doubt on the validity of exploratory factor analysis (EFA). Tests EFA's ability to produce results that replicate known dimensions in a data set. Concludes that EFA should be viewed with cautious optimism and be evaluated according to the findings of this and similar studies. (PA)

  3. Four-wave mixing analysis of quantum dot semiconductor lasers for linewidth enhancement factor extraction.

    Science.gov (United States)

    Lin, Chih-Hao; Lin, Hung-Hsin; Lin, Fan-Yi

    2012-01-02

    We apply a four-wave mixing analysis on a quantum dot laser to simultaneously obtain the linewidth enhancement factor α and other intrinsic laser parameters. By fitting the experimentally obtained regenerative signals and power spectra at different detuning frequencies with the respective curves analytically calculated from the rate equations, parameters including the linewidth enhancement factor, the carrier decay rate in the dots, the differential gain, and the photon decay rate can be determined all at once under the same operating conditions. In this paper, a theoretical model for the four-wave mixing analysis of the QD lasers is derived and verified. The sensitivity and accuracy of the parameter extraction using the four-wave mixing method are presented. Moreover, how each each parameters alter the shapes of the regenerative signals and the power spectra are also discussed.

  4. Fast implementation of kernel simplex volume analysis based on modified Cholesky factorization for endmember extraction

    Institute of Scientific and Technical Information of China (English)

    Jing LI; Xiao-run LI; Li-jiao WANG; Liao-ying ZHAO

    2016-01-01

    Endmember extraction is a key step in the hyperspectral image analysis process. The kernel new simplex growing algorithm (KNSGA), recently developed as a nonlinear alternative to the simplex growing algorithm (SGA), has proven a prom-ising endmember extraction technique. However, KNSGA still suffers from two issues limiting its application. First, its random initialization leads to inconsistency in final results; second, excessive computation is caused by the iterations of a simplex volume calculation. To solve the first issue, the spatial pixel purity index (SPPI) method is used in this study to extract the first endmember, eliminating the initialization dependence. A novel approach tackles the second issue by initially using a modified Cholesky fac-torization to decompose the volume matrix into triangular matrices, in order to avoid directly computing the determinant tauto-logically in the simplex volume formula. Theoretical analysis and experiments on both simulated and real spectral data demon-strate that the proposed algorithm significantly reduces computational complexity, and runs faster than the original algorithm.

  5. Analysis of potential dynamic concealed factors in the difficulty of lower third molar extraction

    Science.gov (United States)

    Singh, Pradeep; Ajmera, Deepal-Haresh; Xiao, Shui-Sheng; Liu, Xiong; Peng, Bin

    2016-01-01

    Background The purpose of this study was to identify potential concealed variables associated with the difficulty of lower third molar (M3) extractions. Material and Methods To address the research purpose, we implemented a prospective study and enrolled a sample of subjects presenting for M3 removal. Predictor variables were categorized into Group-I and Group-II, based on predetermined criteria. The primary outcome variable was the difficulty of extraction, measured as extraction time. Appropriate univariate and multivariate statistics were computed using ordinal logistic regression. Results The sample comprised of 1235 subjects with a mean age of 29.49 +/- 8.92 years in Group-I and 26.20 +/- 11.55 years in Group-II subjects. The mean operating time per M3 extraction was 21.24 +/- 12.80 and 20.24 +/- 12.50 minutes for Group-I and Group-II subjects respectively. Three linear parameters including B-M2 height (distance between imaginary point B on the inferior border of mandibular body, and M2), lingual cortical thickness, bone density and one angular parameter including Rc-Cs angle (angle between ramus curvature and curve of spee), in addition to patient’s age, profile type, facial type, cant of occlusal plane, and decreased overbite, were found to be statistically associated (P < or = 0.05) with extraction difficulty under regression models. Conclusions In conclusion, our study indicates that the difficulty of lower M3 extractions is possibly governed by morphological and biomechanical factors with substantial influence of myofunctional factors. Practical Implications: Preoperative evaluation of dynamic concealed factors may not only help in envisaging the difficulty and planning of surgical approach but might also help in better time management in clinical practice. Key words:Third molar, impacted, extraction, mandibular, facial type. PMID:27694781

  6. On statistical analysis of factors affecting anthocyanin extraction from Ixora siamensis

    Science.gov (United States)

    Mat Nor, N. A.; Arof, A. K.

    2016-10-01

    This study focused on designing an experimental model in order to evaluate the influence of operative extraction parameters employed for anthocyanin extraction from Ixora siamensis on CIE color measurements (a*, b* and color saturation). Extractions were conducted at temperatures of 30, 55 and 80°C, soaking time of 60, 120 and 180 min using acidified methanol solvent with different trifluoroacetic acid (TFA) contents of 0.5, 1.75 and 3% (v/v). The statistical evaluation was performed by running analysis of variance (ANOVA) and regression calculation to investigate the significance of the generated model. Results show that the generated regression models adequately explain the data variation and significantly represented the actual relationship between the independent variables and the responses. Analysis of variance (ANOVA) showed high coefficient determination values (R2) of 0.9687 for a*, 0.9621 for b* and 0.9758 for color saturation, thus ensuring a satisfactory fit of the developed models with the experimental data. Interaction between TFA content and extraction temperature exhibited to the highest significant influence on CIE color parameter.

  7. Analysis of factors that affect the potential of star fruit (Averhoa Bilimbi) and cactus (Gymnocalycium Hossei) extracts as alternative battery

    Science.gov (United States)

    Rahmawati, Sitti; Agnesstacia

    2014-03-01

    This research analyzes the factors that affect the work of the battery from the star fruit extract and the cactus extract. The value voltage and current generated are measure the work of the battery. Voltage measurement based on the electrode distance function, and electrode surface area. Voltage as a surface area electrode function and electrode distance function determined the current density and the voltage generated. From the experimental results obtained that the battery voltage is large enough, it is about 1.8 V for the extract of star fruit, and 1.7 V for the extract of cactus, which means that the juice extract from star fruit and the juice extract of cactus can become an alternative as battery replacement. The measurements with different electrode surface area on the star fruit and cactus extract which has the depth of the electrode 0.5 cm to 4 cm causes a decrease in the electric current generated from 12.5 mA to 1.0 mA, but obtained the same voltage.

  8. Factor analysis

    CERN Document Server

    Gorsuch, Richard L

    2013-01-01

    Comprehensive and comprehensible, this classic covers the basic and advanced topics essential for using factor analysis as a scientific tool in psychology, education, sociology, and related areas. Emphasizing the usefulness of the techniques, it presents sufficient mathematical background for understanding and sufficient discussion of applications for effective use. This includes not only theory but also the empirical evaluations of the importance of mathematical distinctions for applied scientific analysis.

  9. Suction loss during femtosecond laser-assisted small-incision lenticule extraction: Incidence and analysis of risk factors.

    Science.gov (United States)

    Osman, Ihab M; Awad, Ramy; Shi, Wei; Abou Shousha, Mohamed

    2016-02-01

    To determine the incidence of and analyze risk factors for suction loss during femtosecond laser-assisted small incision lenticule extraction in the management of myopia or myopic astigmatism. Roayah Vision Correction Center, Alexandria, Egypt. Retrospective comparative case-control study. All eyes that had femtosecond laser-assisted small-incision lenticule extraction for the correction of myopia and myopic astigmatism performed between August 2010 and April 2014 were included. Eyes that developed suction loss were identified. Their characteristics, including demographic data (age and sex), eye laterality, manifest refraction, flat keratometry (K) reading, steep K reading, K astigmatism, optical zone, central corneal thickness, and corneal cap diameter and thickness, were compared with those in randomly selected control eyes to determine the risk factors for developing suction loss. Of the 3376 eyes that had femtosecond laser-assisted small-incision lenticule extraction during the study, 70 (2.1%) developed loss of suction. The incidence decreased with surgical experience (5.06% in 2010, 3.59% in 2011, 3.41% in 2012, 2.32% in 2013, and 1.84% in 2014), suggesting a learning curve. A multivariate logistic regression model showed that eyes with a larger cap diameter were significantly more likely to develop suction loss (P = .023; odds ratio, 9.60). Surgical experience significantly decreased the risk for suction loss during femtosecond laser-assisted small incision lenticule extraction for the correction of myopia or myopic astigmatism but did not eliminate it. A larger cap diameter significantly increased the risk for developing the suction loss. No author has a financial or proprietary interest in any material or method mentioned. Copyright © 2016 ASCRS and ESCRS. Published by Elsevier Inc. All rights reserved.

  10. Analysis of the flood extent extraction model and the natural flood influencing factors: A GIS-based and remote sensing analysis

    Science.gov (United States)

    Lawal, D. U.; Matori, A. N.; Yusuf, K. W.; Hashim, A. M.; Balogun, A. L.

    2014-02-01

    Serious floods have hit the State of Perlis in 2005, 2010, as well as 2011. Perlis is situated in the northern part of Peninsula Malaysia. The floods caused great damage to properties and human lives. There are various methods used in an attempt to provide the most reliable ways to reduce the flood risk and damage to the optimum level by identifying the flood vulnerable zones. The purpose of this paper is to develop a flood extent extraction model based on Minimum Distance Algorithm and to overlay with the natural flood influencing factors considered herein in order to examine the effect of each factor in flood generation. GIS spatial database was created from a geological map, SPOT satellite image, and the topographical map. An attribute database was equally created from field investigations and historical flood areas reports of the study area. The results show a great correlation between the flood extent extraction model and the flood factors.

  11. Vector valued logarithmic residues and the extraction of elementary factors

    NARCIS (Netherlands)

    H. Bart (Harm); T. Ehrhardt; B. Silbermann

    2007-01-01

    textabstractAn analysis is presented of the circumstances under which, by the extraction of elementary factors, an analytic Banach algebra valued function can be transformed into one taking invertible values only. Elementary factors are generalizations of the simple scalar expressions λ – α, the bui

  12. Extracting spectroscopic factors from direct reactions

    Science.gov (United States)

    Jones, Kate

    2009-10-01

    Direct reactions have been used to probe the structure of the nucleus for decades. After some decline in the 80's and 90's these methods have more recently had a surge in popularity, and new techniques have been added to the experimentalists toolbox. One goal of direct reaction experiments is to extract spectroscopic factors (SFs), related to the shell occupancy. SFs extracted from neutron knockout reactions show reductions, compared to the theoretical value, that are related to the neutron separation energy [1], whereas SFs from the well-established (e,e'p) reaction on stable nuclei are consistently 50% - 60% lower than those expected from the independent-particle shell model [2] over a wide range of masses. pardAs the extraction of spectroscopic factors from direct reaction measurements requires the comparison of data with calculated differential cross sections, the results are by nature model dependent. The influence of different scattering (commonly optical), and bound state potentials, should not be over-looked. Recent attempts to reanalyze single-neutron transfer data using a consistent approach have shown agreement with large basis shell model calculations [3], clearly conflicting with both the (e,e'p) and the knockout data. It has been suggested that the Asymptotic Normalization Coefficient (ANC) is a more valid quantity to extract when the reaction is peripheral [4]. spectroscopic factors are, how they are extracted and what they really mean will be discussed in this talk.[4pt] [1] Alexandra Gade, and Thomas Glasmacher, Prog Part. Nucl. Phys. 60 (2008) 161-224.[0pt] [2] G.J. Kramer, H.P. Blok, and L. Lapik'as, Nucl. Phys. A679 (2001) 267-286.[0pt] [3] Jenny Lee, M.B. Tsang, and W.G. Lynch, Phys. Rev C 75, (2007), 064320.[0pt] [4] D.Y. Pan, F.M. Nunes, and A.M. Mukhamedzhanov, Phys. Rev. C 75, (2007) 024601.

  13. Foundations of factor analysis

    CERN Document Server

    Mulaik, Stanley A

    2009-01-01

    Introduction Factor Analysis and Structural Theories Brief History of Factor Analysis as a Linear Model Example of Factor AnalysisMathematical Foundations for Factor Analysis Introduction Scalar AlgebraVectorsMatrix AlgebraDeterminants Treatment of Variables as Vectors Maxima and Minima of FunctionsComposite Variables and Linear Transformations Introduction Composite Variables Unweighted Composite VariablesDifferentially Weighted Composites Matrix EquationsMulti

  14. Ultraslow extraction with good duty factor

    CERN Document Server

    Cappi, R; Steinbach, C

    1980-01-01

    In the framework of antiproton physics at CERN, a new Low Energy Antiproton Ring (LEAR) is being designed. In the basic mode, it will serve as a beam stretcher giving spill times in the region of an hour. The spill phi (t) must, of course, have a good duty factor ( phi )/sup 2//( phi /sup 2/). A method employing 'stochastic extraction' has been studied theoretically and tried out at the CERN PS ( approximately 9 s flat top) where an extremely good duty factor has been achieved, showing that much longer spill times will be practicable. The pulse length can be varied within wide limits given by the ripple, the momentum acceptance and the intermodulation distortion of the amplifier chain for the noise power. In addition, another method has been found effective which uses empty buckets. These methods need no servo system and both can easily be applied to other synchrotrons. (6 refs).

  15. First course in factor analysis

    CERN Document Server

    Comrey, Andrew L

    2013-01-01

    The goal of this book is to foster a basic understanding of factor analytic techniques so that readers can use them in their own research and critically evaluate their use by other researchers. Both the underlying theory and correct application are emphasized. The theory is presented through the mathematical basis of the most common factor analytic models and several methods used in factor analysis. On the application side, considerable attention is given to the extraction problem, the rotation problem, and the interpretation of factor analytic results. Hence, readers are given a background of

  16. Extraction and elemental analysis of Coleus forskohlii extract

    Directory of Open Access Journals (Sweden)

    Haritha Kanne

    2015-01-01

    Full Text Available Background: Coleus forskohlii Willd. is a popular traditional medicine used since ancient times for treatment of heart diseases, abdominal colic and respiratory disorders. Objective: The aim of this study was to characterize the root extract of the medicinal plant Coleus forskohlii. Materials and Methods: Dry roots of C. forskohlii were used to extract Forskolin using toluene as a solvent. Thus, obtained extract of C. forskohlii was standardized to 30% and used for further studies. Results: The physical properties of the extract were analyzed through scanning electron microscopy analysis, while the characterization of root extract through X-ray diffraction (XRD and element analysis. The morphological feature of the C. forskohlii extract showed a flake like structure and the XRD showed sulfur trioxide (SO 3 and trimer of sulfur trioxide (S 3 O 9 . Through element analysis, elements such as carbon, oxygen, magnesium, aluminum, silicon, phosphorous, and sulfur were identified. Carbon showed the highest weight of 75.49% in comparison to all other elements.

  17. Bayesian Exploratory Factor Analysis

    DEFF Research Database (Denmark)

    Conti, Gabriella; Frühwirth-Schnatter, Sylvia; Heckman, James J.;

    2014-01-01

    This paper develops and applies a Bayesian approach to Exploratory Factor Analysis that improves on ad hoc classical approaches. Our framework relies on dedicated factor models and simultaneously determines the number of factors, the allocation of each measurement to a unique factor, and the corr......This paper develops and applies a Bayesian approach to Exploratory Factor Analysis that improves on ad hoc classical approaches. Our framework relies on dedicated factor models and simultaneously determines the number of factors, the allocation of each measurement to a unique factor......, and the corresponding factor loadings. Classical identification criteria are applied and integrated into our Bayesian procedure to generate models that are stable and clearly interpretable. A Monte Carlo study confirms the validity of the approach. The method is used to produce interpretable low dimensional aggregates...

  18. Bayesian Exploratory Factor Analysis

    DEFF Research Database (Denmark)

    Conti, Gabriella; Frühwirth-Schnatter, Sylvia; Heckman, James J.

    2014-01-01

    This paper develops and applies a Bayesian approach to Exploratory Factor Analysis that improves on ad hoc classical approaches. Our framework relies on dedicated factor models and simultaneously determines the number of factors, the allocation of each measurement to a unique factor......, and the corresponding factor loadings. Classical identification criteria are applied and integrated into our Bayesian procedure to generate models that are stable and clearly interpretable. A Monte Carlo study confirms the validity of the approach. The method is used to produce interpretable low dimensional aggregates...

  19. Investigation and optimization of the factors influencing sorghum protein extraction.

    Science.gov (United States)

    Park, Seok-Ho; Bean, Scott Roger

    2003-11-19

    To optimize the extraction of sorghum proteins, several variables were examined: sample-to-solvent ratio, detergent type and concentration, reducing agent type and concentration, extraction time, and buffer pH and concentration. Samples were quantified and characterized by RP-HPLC, FZCE, and nitrogen analysis. These studies revealed that pH, detergent type, reducing agent type, and sample-to-solvent ratio all had significant effects on the levels of protein extracted. Increasing SDS concentration (2%) and solvent-to-flour ratio (20:1) with multiple 5 min extracts reduced extraction time by 35-80% while still extracting the same levels of total protein relative to the control methodology. Reproducibility using the multiple extractions was found to be excellent with relative standard deviations of extractions.

  20. Factor Analysis and AIC.

    Science.gov (United States)

    Akaike, Hirotugu

    1987-01-01

    The Akaike Information Criterion (AIC) was introduced to extend the method of maximum likelihood to the multimodel situation. Use of the AIC in factor analysis is interesting when it is viewed as the choice of a Bayesian model; thus, wider applications of AIC are possible. (Author/GDC)

  1. A factor analysis to detect factors influencing building national brand

    Directory of Open Access Journals (Sweden)

    Naser Azad

    Full Text Available Developing a national brand is one of the most important issues for development of a brand. In this study, we present factor analysis to detect the most important factors in building a national brand. The proposed study uses factor analysis to extract the most influencing factors and the sample size has been chosen from two major auto makers in Iran called Iran Khodro and Saipa. The questionnaire was designed in Likert scale and distributed among 235 experts. Cronbach alpha is calculated as 84%, which is well above the minimum desirable limit of 0.70. The implementation of factor analysis provides six factors including “cultural image of customers”, “exciting characteristics”, “competitive pricing strategies”, “perception image” and “previous perceptions”.

  2. Predictive factors of successful microdissection testicular sperm extraction.

    Science.gov (United States)

    Bernie, Aaron M; Ramasamy, Ranjith; Schlegel, Peter N

    2013-01-01

    Azoospermia in men requires microsurgical reconstruction or a procedure for sperm retrieval with assisted reproduction to allow fertility. While the chance of successful retrieval of sperm in men with obstructive azoospermia approaches >90%, the chances of sperm retrieval in men with non-obstructive azoospermia (NOA) are not as high. Conventional procedures such as fine needle aspiration of the testis, testicular biopsy and testicular sperm extraction are successful in 20-45% of men with NOA. With microdissection testicular sperm extraction (micro-TESE), the chance of successful retrieval can be up to 60%. Despite this increased success, the ability to counsel patients preoperatively on their probability of successful sperm retrieval has remained challenging. A combination of variables such as age, serum FSH and inhibin B levels, testicular size, genetic analysis, history of Klinefelter syndrome, history of cryptorchidism or varicocele and histopathology on diagnostic biopsy have provided some insight into the chance of successful sperm retrieval in men with NOA. The goal of this review was to evaluate the preoperative factors that are currently available to predict the outcome for success with micro-TESE.

  3. Ultrasound-assisted rapid extraction and kinetic modelling of influential factors: Extraction of camptothecin from Nothapodytes nimmoniana plant.

    Science.gov (United States)

    Patil, Dhiraj M; Akamanchi, Krishnacharya G

    2017-07-01

    Ultrasound-assisted extraction (UAE) of commercially important natural product camptothecin (CPT) from Nothapodytes nimmoniana plant has been investigated. The influences of process factors such as electric acoustic intensity, solid to liquid ratio, duty cycle, temperature and particle size on the maximum extraction yield and kinetic mechanisms of the entire extraction process have been investigated. The kinetics results showed that increasing the intensity, duty cycle, solid to liquid ratio and decreasing the particle size lead to substantial increase in extraction yields compared to classical stirring extraction. Different kinetic models were applied to fit the experimental data. The second order rate model appears to be the best. The extraction rate constant, initial extraction rate and the equilibrium concentration for all experimental conditions have been calculated. SEM analysis of spent plant material clearly showed hollow openings on cell structure, which could be directly correlated to explosive disruption by the action of ultrasound waves. Overall 1.7-fold increase in extraction yields of CPT (0.32% w/w) and decrease in time from 6h to 18min was observed over the stirring method. Copyright © 2017 Elsevier B.V. All rights reserved.

  4. Study on the Extraction of Rb and Cs with Extraction Method and the Influencing Factors Analysis%萃取法(t-BAMBP)提取卤水中铷、铯及其影响因素分析

    Institute of Scientific and Technical Information of China (English)

    孟素青; 李瑞琴; 丁建跃; 管洪佩

    2013-01-01

    Study on using t-BAMBP as extraction agent to extract and separate Rb、Cs and meanwhile investigate the influence of alkali metal elements Na、K in the feed liquid on the extraction effect of rubidium, cesium extraction effect. We conclude that alkali metal element Na has no influence on the extraction of rubidium, cesium while alkali metal element K has great influence on the extraction of rubidium in the system. With the increasing of K concentration in the solution, the extraction rate of rubidium reduces gradually. However, alkali metal element K has little influence on the extraction rate of cesium which can be ignored. This study focus on the extraction technology exploration of rubidium and cesium in depression of potassium rich brine of Jianglin.%研究以t-BAMBP为萃取剂,萃取分离Rb、Cs,同时考察料液中碱金属元素Na、K对铷、铯萃取效果的影响。研究得出:碱金属元素Na对实验体系中铷、铯的萃取没有影响;碱金属元素K对体系中铷的萃取影响较大,随着溶液中K浓度的增大,铷的萃取率逐渐减小;碱金属元素K对铯的萃取率影响较小,可忽略。该研究主要针对江陵凹陷富钾卤水中铷、铯的提取技术进行探索。

  5. Resonance Extraction from the SAID Analysis

    CERN Document Server

    Workman, Ron

    2015-01-01

    Resonances are extracted from a number of energy-dependent and single-energy fits to scattering data. The influence of recent, precise EPECUR data is investigated. Results for the single-energy fits are derived using the L+P method of analysis and are compared to those obtained using contour integration applied to the global energy-dependent fits.

  6. Smart Extraction and Analysis System for Clinical Research.

    Science.gov (United States)

    Afzal, Muhammad; Hussain, Maqbool; Khan, Wajahat Ali; Ali, Taqdir; Jamshed, Arif; Lee, Sungyoung

    2017-05-01

    With the increasing use of electronic health records (EHRs), there is a growing need to expand the utilization of EHR data to support clinical research. The key challenge in achieving this goal is the unavailability of smart systems and methods to overcome the issue of data preparation, structuring, and sharing for smooth clinical research. We developed a robust analysis system called the smart extraction and analysis system (SEAS) that consists of two subsystems: (1) the information extraction system (IES), for extracting information from clinical documents, and (2) the survival analysis system (SAS), for a descriptive and predictive analysis to compile the survival statistics and predict the future chance of survivability. The IES subsystem is based on a novel permutation-based pattern recognition method that extracts information from unstructured clinical documents. Similarly, the SAS subsystem is based on a classification and regression tree (CART)-based prediction model for survival analysis. SEAS is evaluated and validated on a real-world case study of head and neck cancer. The overall information extraction accuracy of the system for semistructured text is recorded at 99%, while that for unstructured text is 97%. Furthermore, the automated, unstructured information extraction has reduced the average time spent on manual data entry by 75%, without compromising the accuracy of the system. Moreover, around 88% of patients are found in a terminal or dead state for the highest clinical stage of disease (level IV). Similarly, there is an ∼36% probability of a patient being alive if at least one of the lifestyle risk factors was positive. We presented our work on the development of SEAS to replace costly and time-consuming manual methods with smart automatic extraction of information and survival prediction methods. SEAS has reduced the time and energy of human resources spent unnecessarily on manual tasks.

  7. Characterization of the key aroma compounds in beef extract using aroma extract dilution analysis.

    Science.gov (United States)

    Takakura, Yukiko; Sakamoto, Tomohiro; Hirai, Sachi; Masuzawa, Takuya; Wakabayashi, Hidehiko; Nishimura, Toshihide

    2014-05-01

    Aroma extract dilution analysis (AEDA) of an ether extract prepared from beef extract (BE) and subsequent identification experiments led to the determination of seven aroma-active compounds in the flavor dilution (FD) factor range of 32-128. Omission experiments to select the most aroma-active compounds from the seven aroma compounds suggested that 2,3,5-trimethyl pyrazine, 1-octen-3-ol, 3-methylbutanoic acid, and 4-hydroxy-2,5-dimethyl-3(2H)-furanone were the main active compounds contributing to the aroma of BE. Aroma recombination, addition, and omission experiments of the four aroma compounds in taste-reconstituted BE showed that each compound had an individual aroma profile. A comparison of the overall aroma between this recombination mixture and BE showed a high similarity, suggesting that the key aroma compounds had been identified successfully.

  8. Extraction and elemental analysis of Coleus forskohlii extract

    OpenAIRE

    Haritha Kanne; Narayan Pandurang Burte; Prasanna, V; Ravi Gujjula

    2015-01-01

    Background: Coleus forskohlii Willd. is a popular traditional medicine used since ancient times for treatment of heart diseases, abdominal colic and respiratory disorders. Objective: The aim of this study was to characterize the root extract of the medicinal plant Coleus forskohlii. Materials and Methods: Dry roots of C. forskohlii were used to extract Forskolin using toluene as a solvent. Thus, obtained extract of C. forskohlii was standardized to 30% and used for further studies. Results: T...

  9. Analysis of antioxidants extracted from polypropylene by supercritical fluid extraction.

    Science.gov (United States)

    Garde, J A; Catalá, R; Gavara, R

    1998-01-01

    Maximal potential migration of six antioxidants (AO) from five polypropylene (PP) formulations was determined by two supercritical fluid extraction (SFE) procedures, both of which contained static and dynamic steps. All analytical conditions affecting the extraction were studied and optimized using Irgafos 168 as standard. SFE was more efficient as temperature and fluid density increased. During the static step in which the samples were exposed to the fluid without flux, the introduction of hexane and methanol as fluid modifiers significantly improved the extraction. Hexane appears to facilitate polymer swelling while methanol solvates the antioxidants. In the dynamic step (in which the extraction actually occurs) time is the key parameter. Extraction for 90 min results in an efficiency of around 75%. The introduction of modifiers during this step (by an HPLC-SFE procedure) did not produce any significant improvement. When SFE was carried out on all samples, extraction efficiency was around 75% except for Irganox 1010 and Hostanox O3. The large molecular volume of these antioxidants may be responsible for the considerable reduction of extraction efficiency. Particle size and shape of polymer sample were also important. The greater the surface to volume ratio the greater the extraction efficiency.

  10. Extraction and analysis of polyphenols: recent trends.

    Science.gov (United States)

    Ajila, C M; Brar, S K; Verma, M; Tyagi, R D; Godbout, S; Valéro, J R

    2011-09-01

    In recent years, there has been an increasing interest in diets rich in fruits and vegetables and this is mostly due to their presumed role in the prevention of various degenerative diseases, such as cancer and cardiovascular diseases. This is mainly due to the presence of bioactive compounds, such as polyphenols, carotenoids, among others. Polyphenols are one of the main classes of secondary metabolites derived from plants offering several health benefits resulting in their use as functional foods. Prior to the use of these polyphenols in specific applications, such as food, pharmaceutical, and the cosmetic industries, they need to be extracted from the natural matrices, then analyzed and characterized. The development of an efficient procedure for the extraction, proper analysis, and characterization of phenolic compounds from different sources is a challenging task due to the structural diversity of phenolic compounds, a complex matrix, and their interaction with other cellular components. In this light, this review discusses different methods of extraction, analysis, and the structural characterization of polyphenolic compounds.

  11. Excited state systematics in extracting nucleon electromagnetic form factors

    CERN Document Server

    Capitani, Stefano; von Hippel, Georg; Jäger, Benjamin; Knippschild, Bastian; Meyer, Harvey B; Rae, Thomas D; Wittig, Hartmut

    2012-01-01

    We present updated preliminary results for the nucleon electromagnetic form factors for non-perturbatively $\\mathcal{O}(a)$ improved Wilson fermions in $N_f=2$ QCD measured on the CLS ensembles. The use of the summed operator insertion method allows us to suppress the influence of excited states in our measurements. A study of the effect that excited state contaminations have on the $Q^2$ dependence of the extracted nucleon form factors may then be made through comparisons of the summation method to standard plateau fits, as well as to excited state fits.

  12. Analysis of Water Extraction From Lunar Regolith

    Science.gov (United States)

    Hegde, U.; Balasubramaniam, R.; Gokoglu, S.

    2012-01-01

    Distribution of water concentration on the Moon is currently an area of active research. Recent studies suggest the presence of ice particles, and perhaps even ice blocks and ice-cemented regolith on the Moon. Thermal extraction of the in-situ water is an attractive means of sa tisfying water requirements for a lunar mission. In this paper, a model is presented to analyze the processes occurring during the heat-up of icy regolith and extraction of the evolved water vapor. The wet regolith is assumed to be present in an initially evacuated and sealed cell which is subsequently heated. The first step of the analysis invol ves calculating the gradual increase of vapor pressure in the closed cell as the temperature is raised. Then, in the second step, the cell is evacuated to low pressure (e.g., vacuum), allowing the water vapor to leave the cell and be captured. The parameters affecting water vap or pressure build-up and evacuation for the purpose of extracting water from lunar regolith are discussed in the paper. Some comparisons wi th available experimental measurements are also made.

  13. Supercritical extraction of oleaginous: parametric sensitivity analysis

    Directory of Open Access Journals (Sweden)

    Santos M.M.

    2000-01-01

    Full Text Available The economy has become universal and competitive, thus the industries of vegetable oil extraction must advance in the sense of minimising production costs and, at the same time, generating products that obey more rigorous patterns of quality, including solutions that do not damage the environment. The conventional oilseed processing uses hexane as solvent. However, this solvent is toxic and highly flammable. Thus the search of substitutes for hexane in oleaginous extraction process has increased in the last years. The supercritical carbon dioxide is a potential substitute for hexane, but it is necessary more detailed studies to understand the phenomena taking place in such process. Thus, in this work a diffusive model for semi-continuous (batch for the solids and continuous for the solvent isothermal and isobaric extraction process using supercritical carbon dioxide is presented and submitted to a parametric sensitivity analysis by means of a factorial design in two levels. The model parameters were disturbed and their main effects analysed, so that it is possible to propose strategies for high performance operation.

  14. SPS extraction kicker magnet thermal analysis

    CERN Document Server

    Timmins, M

    2004-01-01

    As the SPS accelerator will be used for the CNGS project and as LHC injector, the proton beams passing through its extraction kickers will have a much higher intensity than in the past. The image currents generated by this beam may provoke a temperature increase in the magnet's ferrite core to temperatures above the Curie temperature, unless the heat produced is effectively removed. A further complication arises from the fact that a high voltage is applied to the ferrites. The solution adopted consists in transferring the heat via Aluminium Nitride insulators to a water cooling circuit. The heat transfer analysis and the calculated thermal distribution of the magnet are presented.

  15. Exploratory factor analysis in Rehabilitation Psychology: a content analysis.

    Science.gov (United States)

    Roberson, Richard B; Elliott, Timothy R; Chang, Jessica E; Hill, Jessica N

    2014-11-01

    Our objective was to examine the use and quality of exploratory factor analysis (EFA) in articles published in Rehabilitation Psychology. Trained raters examined 66 separate exploratory factor analyses in 47 articles published between 1999 and April 2014. The raters recorded the aim of the EFAs, the distributional statistics, sample size, factor retention method(s), extraction and rotation method(s), and whether the pattern coefficients, structure coefficients, and the matrix of association were reported. The primary use of the EFAs was scale development, but the most widely used extraction and rotation method was principle component analysis, with varimax rotation. When determining how many factors to retain, multiple methods (e.g., scree plot, parallel analysis) were used most often. Many articles did not report enough information to allow for the duplication of their results. EFA relies on authors' choices (e.g., factor retention rules extraction, rotation methods), and few articles adhered to all of the best practices. The current findings are compared to other empirical investigations into the use of EFA in published research. Recommendations for improving EFA reporting practices in rehabilitation psychology research are provided.

  16. Factor analysis of multivariate data

    Digital Repository Service at National Institute of Oceanography (India)

    Fernandes, A.A.; Mahadevan, R.

    A brief introduction to factor analysis is presented. A FORTRAN program, which can perform the Q-mode and R-mode factor analysis and the singular value decomposition of a given data matrix is presented in Appendix B. This computer program, uses...

  17. Factor Analysis of Intern Effectiveness

    Science.gov (United States)

    Womack, Sid T.; Hannah, Shellie Louise; Bell, Columbus David

    2012-01-01

    Four factors in teaching intern effectiveness, as measured by a Praxis III-similar instrument, were found among observational data of teaching interns during the 2010 spring semester. Those factors were lesson planning, teacher/student reflection, fairness & safe environment, and professionalism/efficacy. This factor analysis was as much of a…

  18. Factor analysis and missing data

    NARCIS (Netherlands)

    Kamakura, WA; Wedel, M

    2000-01-01

    The authors study the estimation of factor models and the imputation of missing data and propose an approach that provides direct estimates of factor weights without the replacement of missing data with imputed values. First, the approach is useful in applications of factor analysis in the presence

  19. Application of Waveform Factors in Extracting Fault Trend of Rotary Machines

    Institute of Scientific and Technical Information of China (English)

    YE Yu-gang; ZUO Yun-bo; HUANG Xiao-bin

    2009-01-01

    Vibration intensity and non-dimensional amplitude parameters are often used to extract the fault trend of rotary machines. But, they are the parameters related to energy, and can not describe the fault trend because of varying load and conditions or too slight change of vibration signal. For this reason, three non-dimensional parameters are presented, namely waveform repeatability factor, waveform jumping factor and waveform similarity factor, called as waveform factors jointly, which are based on statistics analysis for the waveform and sensitive to the change of signal waveform. When they are used to extract the fault trend of rotary machines as a kind of technology of instrument and meter, they can reflect the fault trend better than the vibration intensity, peak amplitude and margin index.

  20. Extraction of glabridin with heat reflux extraction by response surface analysis

    Directory of Open Access Journals (Sweden)

    Li-ying DING

    2013-12-01

    Full Text Available Objective: To study the extraction process of glabridin from Glycyrrhiza glabra. Methods: The solid-liquid ratio, extraction time and extraction temperature are the three main factors in the experiment, and the extract solvent is ethyl acetate. Establish the response surface quadratic regression equation of glabridin extraction rate and purity. Results:The results indicate that the optimum conditions for glabridin are as follows: solvent is ethyl acetate, extraction time is 90 min, the ratio of solvent to solid is 35 ∶1 (ml/g, and extraction temperature is 44.7 ℃, purity and the maximum yield of Extraction of glabridin are 6.96% and 0.241%, The validation test shows that the experimental values of the model are 0.235% and 6.05% . Conclusion: The model equation can predict the experimental results, it can be used as reference in industrial production. 

  1. Extraction and Analysis of Display Data

    Science.gov (United States)

    Land, Chris; Moye, Kathryn

    2008-01-01

    The Display Audit Suite is an integrated package of software tools that partly automates the detection of Portable Computer System (PCS) Display errors. [PCS is a lap top computer used onboard the International Space Station (ISS).] The need for automation stems from the large quantity of PCS displays (6,000+, with 1,000,000+ lines of command and telemetry data). The Display Audit Suite includes data-extraction tools, automatic error detection tools, and database tools for generating analysis spread sheets. These spread sheets allow engineers to more easily identify many different kinds of possible errors. The Suite supports over 40 independent analyses, 16 NASA Tech Briefs, November 2008 and complements formal testing by being comprehensive (all displays can be checked) and by revealing errors that are difficult to detect via test. In addition, the Suite can be run early in the development cycle to find and correct errors in advance of testing.

  2. Web Template Extraction Based on Hyperlink Analysis

    Directory of Open Access Journals (Sweden)

    Julián Alarte

    2015-01-01

    Full Text Available Web templates are one of the main development resources for website engineers. Templates allow them to increase productivity by plugin content into already formatted and prepared pagelets. For the final user templates are also useful, because they provide uniformity and a common look and feel for all webpages. However, from the point of view of crawlers and indexers, templates are an important problem, because templates usually contain irrelevant information such as advertisements, menus, and banners. Processing and storing this information is likely to lead to a waste of resources (storage space, bandwidth, etc.. It has been measured that templates represent between 40% and 50% of data on the Web. Therefore, identifying templates is essential for indexing tasks. In this work we propose a novel method for automatic template extraction that is based on similarity analysis between the DOM trees of a collection of webpages that are detected using menus information. Our implementation and experiments demonstrate the usefulness of the technique.

  3. A Demonstration of the Impact of Outliers on the Decisions about the Number of Factors in Exploratory Factor Analysis

    Science.gov (United States)

    Liu, Yan; Zumbo, Bruno D.; Wu, Amery D.

    2012-01-01

    Previous studies have rarely examined the impact of outliers on the decisions about the number of factors to extract in an exploratory factor analysis. The few studies that have investigated this issue have arrived at contradictory conclusions regarding whether outliers inflated or deflated the number of factors extracted. By systematically…

  4. Antibiogram and GC analysis of Euphorbia hirta leaf extract

    OpenAIRE

    2007-01-01

    The antibiogram activity of ethanolic and aqueous extract of E.hirta was studied. Ethanol extract of the plant showed the maximal antibacterial activity and G.C Analysis showed the presence of citronellal. The extract showed inhibited the growth of E.coli, S.aureus, P.aeruginosa, Proteus etc.,

  5. Extraction and interpretation of gammaN-->Delta form factors within a dynamical model

    Energy Technology Data Exchange (ETDEWEB)

    B. Juliá-Díaz, T.-S. H. Lee, T. Sato, and L. C. Smith

    2007-01-01

    Within the dynamical model of Refs. [Phys. Rev. C54, 2660 (1996); C63, 055201 (2001)], we perform an analysis of recent data of pion electroproduction reactions at energies near the {Delta}(1232) resonance. We discuss possible interpretations of the extracted bare and dressed {gamma} N {yields} {Delta} form factors in terms of relativistic constituent quark models and Lattice QCD calculations. Possible future developments are discussed.

  6. Extracting Factors for Students' Motivation in Studying Mathematics

    Science.gov (United States)

    Teoh, Sian Hoon; Koo, Ah Choo; Singh, Parmjit

    2010-01-01

    The purpose of this article is to identify factors that statistically explain the variation and the measures on the level of motivation of a sample of mathematics students in a university. Specifically, this analysis will identify groups of similar items and reduce the number of variables used in a study. This article explains the use of…

  7. Sonme Factors that Affect the Free Radical-scavenging Activity of Tea Extracts

    Institute of Scientific and Technical Information of China (English)

    1999-01-01

    Some factors that affect the free radical-scavenging activety of two tea extracts were studied in vitro. It was found that concentration of tea extract or heating tea extract or treating with activated carbon and diatomite all had obvious effect on the scavenging activety of green tea extract ,but heating or treating with diaomite had less effect on the scavenging activity of black tea extract. Ascorbic acid, for having synergic effect with tea extracts, could enhance the scavenging activity of tea extracts markedly, and the contrary was cupric ion. Reducing sugars such as fructose and glucose also had some syncrgic effect to tea extracts.

  8. Exploratory matrix factorization for PET image analysis.

    Science.gov (United States)

    Kodewitz, A; Keck, I R; Tomé, A M; Lang, E W

    2010-01-01

    Features are extracted from PET images employing exploratory matrix factorization techniques such as nonnegative matrix factorization (NMF). Appropriate features are fed into classifiers such as a support vector machine or a random forest tree classifier. An automatic feature extraction and classification is achieved with high classification rate which is robust and reliable and can help in an early diagnosis of Alzheimer's disease.

  9. An Object Extraction Model Using Association Rules and Dependence Analysis

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Extracting objects from legacy systems is a basic step insystem's obje ct-orientation to improve the maintainability and understandability of the syst e ms. A new object extraction model using association rules an d dependence analysis is proposed. In this model data are classified by associat ion rules and the corresponding operations are partitioned by dependence analysis.

  10. The methodology of semantic analysis for extracting physical effects

    Science.gov (United States)

    Fomenkova, M. A.; Kamaev, V. A.; Korobkin, D. M.; Fomenkov, S. A.

    2017-01-01

    The paper represents new methodology of semantic analysis for physical effects extracting. This methodology is based on the Tuzov ontology that formally describes the Russian language. In this paper, semantic patterns were described to extract structural physical information in the form of physical effects. A new algorithm of text analysis was described.

  11. Food Fish Identification from DNA Extraction through Sequence Analysis

    Science.gov (United States)

    Hallen-Adams, Heather E.

    2015-01-01

    This experiment exposed 3rd and 4th y undergraduates and graduate students taking a course in advanced food analysis to DNA extraction, polymerase chain reaction (PCR), and DNA sequence analysis. Students provided their own fish sample, purchased from local grocery stores, and the class as a whole extracted DNA, which was then subjected to PCR,…

  12. Food Fish Identification from DNA Extraction through Sequence Analysis

    Science.gov (United States)

    Hallen-Adams, Heather E.

    2015-01-01

    This experiment exposed 3rd and 4th y undergraduates and graduate students taking a course in advanced food analysis to DNA extraction, polymerase chain reaction (PCR), and DNA sequence analysis. Students provided their own fish sample, purchased from local grocery stores, and the class as a whole extracted DNA, which was then subjected to PCR,…

  13. Which factors are associated with difficult surgical extraction of impacted lower third molars?

    OpenAIRE

    Park, Kyeong-Lok

    2016-01-01

    Objectives The aim of this retrospective study was to investigate factors associated with increased difficulty in the surgical extraction of impacted lower third molars and to improve identification of difficult cases. Materials and Methods A total of 680 patients who required 762 surgical extractions of impacted lower third molars from 2009 to 2014 were enrolled in the study. Demographic factors, clinical factors, radiographic factors, surgical extraction difficulty, and presumed causes of d...

  14. Extracting Minerals from Seawater: An Energy Analysis

    Directory of Open Access Journals (Sweden)

    Ugo Bardi

    2010-04-01

    Full Text Available The concept of recovering minerals from seawater has been proposed as a way of counteracting the gradual depletion of conventional mineral ores. Seawater contains large amounts of dissolved ions and the four most concentrated metal ones (Na, Mg, Ca, K are being commercially extracted today. However, all the other metal ions exist at much lower concentrations. This paper reports an estimate of the feasibility of the extraction of these metal ions on the basis of the energy needed. In most cases, the result is that extraction in amounts comparable to the present production from land mines would be impossible because of the very large amount of energy needed. This conclusion holds also for uranium as fuel for the present generation of nuclear fission plants. Nevertheless, in a few cases, mainly lithium, extraction from seawater could provide amounts of metals sufficient for closing the cycle of metal use in the economy, provided that an increased level of recycling can be attained.

  15. Predictive factors of difficulty in lower third molar extraction: A prospective cohort study

    Science.gov (United States)

    Alvira-González, Joaquín; Valmaseda-Castellón, Eduard; Quesada-Gómez, Carmen; Gay-Escoda, Cosme

    2017-01-01

    Background Several publications have measured the difficulty of third molar removal, trying to establish the main risk factors, however several important preoperative and intraoperative variables are overlooked. Material and Methods A prospective cohort study comprising a total of 130 consecutive lower third molar extractions was performed. The outcome variables used to measure the difficulty of the extraction were operation time and a 100mm visual analogue scale filled by the surgeon at the end of the surgical procedure. The predictors were divided into 4 different groups (demographic, anatomic, radiographic and operative variables). A descriptive, bivariate and multivariate analysis of the data was performed. Results Patients’ weight, the presence of bulbous roots, the need to perform crown and root sectioning of the lower third molar and Pell and Gregory 123 classification significantly influenced both outcome variables (p< 0.05). Conclusions Certain anatomical, radiological and operative variables appear to be important factors in the assessment of surgical difficulty in the extraction of lower third molars. Key words:Third molar, surgical extraction, surgical difficulty. PMID:27918736

  16. Transforming Rubrics Using Factor Analysis

    Science.gov (United States)

    Baryla, Ed; Shelley, Gary; Trainor, William

    2012-01-01

    Student learning and program effectiveness is often assessed using rubrics. While much time and effort may go into their creation, it is equally important to assess how effective and efficient the rubrics actually are in terms of measuring competencies over a number of criteria. This study demonstrates the use of common factor analysis to identify…

  17. Effect of factors on the extraction of boron from slags

    Science.gov (United States)

    Zhang, Peixin; Sui, Zhitong

    1995-04-01

    The effects of slag composition, additive agent, and heat treatment on the crystal morphologies, the crystallization behavior, and the efficiency of extraction of boron (EEB) from slags were investigated by chemical analysis, polarization microscope, and X-ray diffraction (XRD) as well as differential thermal analysis (DTA). The EEB varied with the slag composition. The farther the slag composition deviated from the line between 2MgO · B2O3 and 2MgO · SiO2 in the MgO-B2O3-SiO2 system, the lower the EEB. The EEB was directly related to the precipitating characteristics of the boron component in the slags. The EEB was high if the boron component existed in the form of a crystalline phase, otherwise the EEB was low when boron was in the form of an amorphous phase. The EEB from MgO-Al2O3-CaO-B2O3-SiO2 slag varied with the temperature of heat treatment; the highest EEB appeared at 1100 °C. The EEB and the crystallinities were increased by addition of TiO2 and MOx (M = Mg, Ca, Fe, Si). The effect of MOx was more notable than that of TiO2.

  18. Multicenter Retrospective Study of the Risk Factors of Hemorrhage After Tooth Extraction in Patients Receiving Antiplatelet Therapy.

    Science.gov (United States)

    Yanamoto, Souichi; Hasegawa, Takumi; Rokutanda, Satoshi; Komori, Sayaka; Tachibana, Akira; Kojima, Yuka; Koyama, Yoshito; Shibuya, Yasuyuki; Kurita, Hiroshi; Komori, Takahide; Umeda, Masahiro

    2017-07-01

    To identify the risk factors affecting hemorrhage after tooth extraction in patients receiving antiplatelet therapy, this study investigated the relation between various factors and hemorrhage events after tooth extraction. The records of 264 patients receiving antiplatelet therapy who underwent tooth extraction were retrospectively reviewed from 6 institutions belonging to the Japanese Study Group of Cooperative Dentistry with Medicine. Demographic information, hemorrhage events after tooth extraction, the presence or absence of comorbidities, antiplatelet agent, the use of preoperative antibiotics or nonsteroidal anti-inflammatory drugs, number of teeth extracted, serum creatinine level, estimated glomerular filtration rate, and alanine transaminase level were assessed. Risk factors for hemorrhage after tooth extraction were evaluated by univariate and multivariate analyses. The study population of 264 patients consisted of 153 men and 111 women with a mean age of 73.6 years (range, 24 to 96 yr). Six hundred ninety-four teeth were extracted (mean, 2.6 ± 2.3 teeth per patient). In patients receiving antiplatelet therapy, the frequency of hemorrhage after tooth extraction, including mild and self-controlled hemorrhages, was 17.4%. Univariate analysis showed that serum creatinine level and dual antiplatelet therapy were correlated with hemorrhage after tooth extraction (P = .001 and P = .049, respectively). Only serum creatinine was identified as an independent risk factor for hemorrhage after tooth extraction in patients receiving antiplatelet therapy (P = .037). The risk of hemorrhage after tooth extraction is increased in patients receiving dual antiplatelet therapy with or without chronic kidney disease. Local hemostatic treatments, such as at least suturing, are recommended. Copyright © 2017 American Association of Oral and Maxillofacial Surgeons. Published by Elsevier Inc. All rights reserved.

  19. A risk-based approach to management of leachables utilizing statistical analysis of extractables.

    Science.gov (United States)

    Stults, Cheryl L M; Mikl, Jaromir; Whelehan, Oliver; Morrical, Bradley; Duffield, William; Nagao, Lee M

    2015-04-01

    To incorporate quality by design concepts into the management of leachables, an emphasis is often put on understanding the extractable profile for the materials of construction for manufacturing disposables, container-closure, or delivery systems. Component manufacturing processes may also impact the extractable profile. An approach was developed to (1) identify critical components that may be sources of leachables, (2) enable an understanding of manufacturing process factors that affect extractable profiles, (3) determine if quantitative models can be developed that predict the effect of those key factors, and (4) evaluate the practical impact of the key factors on the product. A risk evaluation for an inhalation product identified injection molding as a key process. Designed experiments were performed to evaluate the impact of molding process parameters on the extractable profile from an ABS inhaler component. Statistical analysis of the resulting GC chromatographic profiles identified processing factors that were correlated with peak levels in the extractable profiles. The combination of statistically significant molding process parameters was different for different types of extractable compounds. ANOVA models were used to obtain optimal process settings and predict extractable levels for a selected number of compounds. The proposed paradigm may be applied to evaluate the impact of material composition and processing parameters on extractable profiles and utilized to manage product leachables early in the development process and throughout the product lifecycle.

  20. Electromembrane extraction for pharmaceutical and biomedical analysis

    DEFF Research Database (Denmark)

    Huang, Chuixiu; Seip, Knut Fredrik; Gjelstad, Astrid

    2015-01-01

    Electromembrane extraction (EME) was presented as a new microextraction concept in 2006, and since the introduction, substantial research has been conducted to develop this concept in different areas of analytical chemistry. To date, more than 100 research papers have been published on EME...

  1. Extraction Factor Of Tungsten Sources From Tungsten Scraps By Zinc Decomposition Process

    National Research Council Canada - National Science Library

    J.-H. Pee; G.H. Kim; H.Y. Lee; Y.J. Kim

    2015-01-01

    Decomposition promoting factors and extraction process of tungsten carbide and tungstic acid powders in the zinc decomposition process of tungsten scraps which are composed mostly of tungsten carbide...

  2. Scalable group level probabilistic sparse factor analysis

    DEFF Research Database (Denmark)

    Hinrich, Jesper Løve; Nielsen, Søren Føns Vind; Riis, Nicolai Andre Brogaard

    2017-01-01

    Many data-driven approaches exist to extract neural representations of functional magnetic resonance imaging (fMRI) data, but most of them lack a proper probabilistic formulation. We propose a scalable group level probabilistic sparse factor analysis (psFA) allowing spatially sparse maps, component...... pruning using automatic relevance determination (ARD) and subject specific heteroscedastic spatial noise modeling. For task-based and resting state fMRI, we show that the sparsity constraint gives rise to components similar to those obtained by group independent component analysis. The noise modeling...... shows that noise is reduced in areas typically associated with activation by the experimental design. The psFA model identifies sparse components and the probabilistic setting provides a natural way to handle parameter uncertainties. The variational Bayesian framework easily extends to more complex...

  3. Removal of iron interferences by solvent extraction for geochemical analysis by atomic-absorption spectrophotometry

    Science.gov (United States)

    Zhou, L.; Chao, T.T.; Sanzolone, R.F.

    1985-01-01

    Iron is a common interferent in the determination of many elements in geochemical samples. Two approaches for its removal have been taken. The first involves removal of iron by extraction with methyl isobutyl ketone (MIBK) from hydrochloric acid medium, leaving the analytes in the aqueous phase. The second consists of reduction of iron(III) to iron(II) by ascorbic acid to minimize its extraction into MIBK, so that the analytes may be isolated by extraction. Elements of interest can then be determined using the aqueous solution or the organic extract, as appropriate. Operating factors such as the concentration of hydrochloric acid, amounts of iron present, number of extractions, the presence or absence of a salting-out agent, and the optimum ratio of ascorbic acid to iron have been determined. These factors have general applications in geochemical analysis by atomic-absorption spectrophotometry. ?? 1985.

  4. Extraction and analysis of indole derivatives from fungal biomass.

    Science.gov (United States)

    Gartz, J

    1994-01-01

    The occurrence and extraction of indole derivatives in six species from four genera of higher fungi were investigated. By using pure methanol for extraction of the mushrooms analysis revealed the highest concentrations of psilocybin and baeocystin. The psilocin content of the species was higher by using aqueous solutions of alcohols than with methanol alone but was an artificial phenomenon caused by enzymatic destruction of psilocybin. The extraction with dilute acetic acid yielded better results than with the water containing alcohols. The simple one-step procedure with methanol for the quantitative extraction is still the safest method to obtain the genuine alkaloids from fungal biomass.

  5. Cavitation pulse extraction and centrifugal pump analysis

    Energy Technology Data Exchange (ETDEWEB)

    Luo, Hong Lind Shaoran [University of Electronic Science and Technology of China, Chengdu (China); Yu, Bo; Qing, Biao [Xihua University, Chengdu (China)

    2017-03-15

    This study extracted cavitation pulses from hydrophone signals sampled in a centrifugal pump and analyzed their characteristics. The modified and simplified Empirical mode decomposition (EMD) algorithm was proposed for extracting cavitation pulses from strong background noise. Experimental results showed that EMD can effectively suppress noise and obtain clear cavitation pulses, facilitating the identification of the number of pulses associated with the degree of cavitation. The cavitation characteristics were modeled to predict the value of incipient cavitation. Then, we proposed a method for detecting the wear of the impeller surface. That is, the information on the impeller surface of the centrifugal pump, including the roughness of the impeller surface and its wear trends, were quantified based on the net positive suction head available of incipient cavitation. The findings indicate that the proposed technique is suitable for condition monitoring of the pump.

  6. Biochemical analysis of extracting fermented coconut oil

    OpenAIRE

    2008-01-01

    Vegetable oil can be produced from a perennial plant such as coconut (Cocos nucifera L.). There are few techniques for coconut oil extraction, such as physical, chemical, and fermentative processes. The fermentation process uses microbial inoculum as starter. Ground coconut meat was soaked in warm water, than squeezed several times to get coconut milk. After being allowed to stand for 4-5 hours, it separated into two layers, cream and skim. Starter was prepared from a mixture of milk and coco...

  7. Linguistic feature analysis for protein interaction extraction

    Directory of Open Access Journals (Sweden)

    Cornelis Chris

    2009-11-01

    Full Text Available Abstract Background The rapid growth of the amount of publicly available reports on biomedical experimental results has recently caused a boost of text mining approaches for protein interaction extraction. Most approaches rely implicitly or explicitly on linguistic, i.e., lexical and syntactic, data extracted from text. However, only few attempts have been made to evaluate the contribution of the different feature types. In this work, we contribute to this evaluation by studying the relative importance of deep syntactic features, i.e., grammatical relations, shallow syntactic features (part-of-speech information and lexical features. For this purpose, we use a recently proposed approach that uses support vector machines with structured kernels. Results Our results reveal that the contribution of the different feature types varies for the different data sets on which the experiments were conducted. The smaller the training corpus compared to the test data, the more important the role of grammatical relations becomes. Moreover, deep syntactic information based classifiers prove to be more robust on heterogeneous texts where no or only limited common vocabulary is shared. Conclusion Our findings suggest that grammatical relations play an important role in the interaction extraction task. Moreover, the net advantage of adding lexical and shallow syntactic features is small related to the number of added features. This implies that efficient classifiers can be built by using only a small fraction of the features that are typically being used in recent approaches.

  8. Biochemical analysis of extracting fermented coconut oil

    Directory of Open Access Journals (Sweden)

    YATI SUDARYATI SOEKA

    2008-04-01

    Full Text Available Vegetable oil can be produced from a perennial plant such as coconut (Cocos nucifera L.. There are few techniques for coconut oil extraction, such as physical, chemical, and fermentative processes. The fermentation process uses microbial inoculum as starter. Ground coconut meat was soaked in warm water, than squeezed several times to get coconut milk. After being allowed to stand for 4-5 hours, it separated into two layers, cream and skim. Starter was prepared from a mixture of milk and coconut water (1:9, v/v which enriched with 2% tomato extract, 0.5% urea, and 1.0% molasses and then preincubated for 5 days under agitation. Starter with different concentration (1.0; 2.5; 5.0; and 10% were added onto coconut milk and allowed to be fermented for over night. The extracting oil was analyzed for further experiment, especially, on its antibacterial activity. The maximum yield of 23% was achieved by using 2.5% starter. Total protein, fat, FFA, and cholesterol content of the fermented coconut oil were 0.05%, 96.45%, 0.29%, and 0.008%, respectively. The gas chromatogram showed that this oil contained high lauric acid (46.20%, and 13.94% miristic, 5.97% palmitic, 9.00% palmitoleic, and 19.73% stearic acid, respectively.

  9. A Comparison of Distribution Free and Non-Distribution Free Factor Analysis Methods

    Science.gov (United States)

    Ritter, Nicola L.

    2012-01-01

    Many researchers recognize that factor analysis can be conducted on both correlation matrices and variance-covariance matrices. Although most researchers extract factors from non-distribution free or parametric methods, researchers can also extract factors from distribution free or non-parametric methods. The nature of the data dictates the method…

  10. Investigating product development strategy in beverage industry using factor analysis

    Directory of Open Access Journals (Sweden)

    Naser Azad

    2013-03-01

    Full Text Available Selecting a product development strategy that is associated with the company's current service or product innovation, based on customers’ needs and changing environment, plays an important role in increasing demand, increasing market share, increasing sales and profits. Therefore, it is important to extract effective variables associated with product development to improve performance measurement of firms. This paper investigates important factors influencing product development strategies using factor analysis. The proposed model of this paper investigates 36 factors and, using factor analysis, we extract six most influential factors including information sharing, intelligence information, exposure strategy, differentiation, research and development strategy and market survey. The first strategy, partnership, includes five sub-factor including product development partnership, partnership with foreign firms, customers’ perception from competitors’ products, Customer involvement in product development, inter-agency coordination, customer-oriented approach to innovation and transmission of product development change where inter-agency coordination has been considered the most important factor. Internal strengths are the most influential factors impacting the second strategy, intelligence information. The third factor, introducing strategy, introducing strategy, includes four sub criteria and consumer buying behavior is the most influencing factor. Differentiation is the next important factor with five components where knowledge and expertise in product innovation is the most important one. Research and development strategy with four sub-criteria where reducing product development cycle plays the most influential factor and finally, market survey strategy is the last important factor with three factors and finding new market plays the most important role.

  11. Orthodontic risk factors for temporomandibular disorders (TMD). I: Premolar extractions.

    Science.gov (United States)

    Kremenak, C R; Kinser, D D; Harman, H A; Menard, C C; Jakobsen, J R

    1992-01-01

    Concern about claims that premolar extractions may put patients at risk for temporomandibular disorders (TMD) led to this study. We report first findings from a longitudinal study of orthodontic patients begun in 1983. By using the methods of Helkimo, we collected TMD data before initiation of orthodontic treatment, between 0 and 12 months after debanding, and 12 to 24 months after debanding. Analyses related Helkimo scores with premolar extractions in 65 patients for whom orthodontic treatment had been completed. Twenty-six patients were treated without premolar extractions, 25 had four premolars extracted, and 14 had two upper premolars extracted. Tests for significance of differences between mean Helkimo scores were conducted for the nonextraction group compared with the extraction groups, and between pretreatment and posttreatment Helkimo scores for each group. Results included: (1) no significant intergroup differences between mean pretreatment or posttreatment scores, and (2) small but statistically significant (p less than 0.05) differences (in the direction of improvement) between mean pretreatment and posttreatment scores for both the nonextraction group and for the four premolar extraction group.

  12. Predictive factors of difficulty in lower third molar extraction: A prospective cohort study.

    Science.gov (United States)

    Alvira-González, J; Figueiredo, R; Valmaseda-Castellón, E; Quesada-Gómez, C; Gay-Escoda, C

    2017-01-01

    Several publications have measured the difficulty of third molar removal, trying to establish the main risk factors, however several important preoperative and intraoperative variables are overlooked. A prospective cohort study comprising a total of 130 consecutive lower third molar extractions was performed. The outcome variables used to measure the difficulty of the extraction were operation time and a 100mm visual analogue scale filled by the surgeon at the end of the surgical procedure. The predictors were divided into 4 different groups (demographic, anatomic, radiographic and operative variables). A descriptive, bivariate and multivariate analysis of the data was performed. Patients' weight, the presence of bulbous roots, the need to perform crown and root sectioning of the lower third molar and Pell and Gregory 123 classification significantly influenced both outcome variables (pthird molars.

  13. Watermark Detection and Extraction Using Independent Component Analysis Method

    Directory of Open Access Journals (Sweden)

    Yu Dan

    2002-01-01

    Full Text Available This paper proposes a new image watermarking technique, which adopts Independent Component Analysis (ICA for watermark detection and extraction process (i.e., dewatermarking. Watermark embedding is performed in the spatial domain of the original image. Watermark can be successfully detected during the Principle Component Analysis (PCA whitening stage. A nonlinear robust batch ICA algorithm, which is able to efficiently extract various temporally correlated sources from their observed linear mixtures, is used for blind watermark extraction. The evaluations illustrate the validity and good performance of the proposed watermark detection and extraction scheme based on ICA. The accuracy of watermark extraction depends on the statistical independence between the original, key and watermark images and the temporal correlation of these sources. Experimental results demonstrate that the proposed system is robust to several important image processing attacks, including some geometrical transformations—scaling, cropping and rotation, quantization, additive noise, low pass filtering, multiple marks, and collusion.

  14. Natural moisturizing factors (NMF) in the stratum corneum (SC). I. Effects of lipid extraction and soaking.

    Science.gov (United States)

    Robinson, Marisa; Visscher, Marty; Laruffa, Angela; Wickett, Randy

    2010-01-01

    Natural moisturizing factor (NMF) is essential for appropriate stratum corneum hydration, barrier homeostasis, desquamation, and plasticity. It is formed from filaggrin proteolysis to small, hygroscopic molecules including amino acids. We hypothesized that common lipid extraction and soaking in water would alter the level of NMF in the upper SC and its biophysical properties. A novel method of measuring and quantifying the amino acid components of NMF is presented. Adhesive tapes were used to collect samples of the stratum corneum (SC) and were extracted with 6mM perchloric acid for analysis by reverse-phase HPLC. HPLC results were standardized to the amount of protein removed by the tapes. An increase in NMF was found with increased SC depth. Also, the combination of extraction and soaking was found to increase NMF loss relative to control or to extraction or soaking alone. Our results indicate that common skin care practices significantly influence the water binding materials in the upper SC. The findings have implications for the evaluation and formulation of skin care products.

  15. Building Extraction from LIDAR Based Semantic Analysis

    Institute of Scientific and Technical Information of China (English)

    YU Jie; YANG Haiquan; TAN Ming; ZHANG Guoning

    2006-01-01

    Extraction of buildings from LIDAR data has been an active research field in recent years. A scheme for building detection and reconstruction from LIDAR data is presented with an object-oriented method which is based on the buildings' semantic rules. Two key steps are discussed: how to group the discrete LIDAR points into single objects and how to establish the buildings' semantic rules. In the end, the buildings are reconstructed in 3D form and three common parametric building models (flat, gabled, hipped) are implemented.

  16. Factors affecting high-pressure solvent extraction (accelerated solvent extraction) of additives from polymers.

    Science.gov (United States)

    Vandenburg, H J; Clifford, A A; Bartle, K D; Zhu, S A; Carroll, J; Newton, I D; Garden, L M

    1998-05-01

    Irganox 1010 (pentaerythritol tetrakis[3-(3,5-di-tert-butyl-4-hydroxyphenyl)] propionate) is successfully extracted from polypropylene using solvents at high temperatures and pressures in a homemade accelerated solvent extraction system. For example, using freeze-ground polymer, 90% extraction is possible within 5 min with 2-propanol at 150 °C. Extraction curves for 2-propanol and acetone fit well to the "hot ball" model, previously developed for supercritical fluid extraction. Diffusion coefficients are determined for extractions with 2-propanol, acetone, and cyclohexane over a range of temperatures, and the activation energies for the diffusion are 134, 107, and 61 kJ mol(-)(1), respectively. The lower figure for acetone and cyclohexane indicates that these solvents swell the polymer more than does 2-propanol. The polymer dissolves in the solvent at too high a temperature, which causes blockage of the transfer lines. For maximum extraction rates, the highest temperature for each solvent that avoids dissolution of the polymer should be used. The use of mixed solvents is investigated and shows advantages in some cases, with the aim of producing a solvent that will swell the polymer but not dissolve it.

  17. Extraction and Analysis of Terpenes/Terpenoids.

    Science.gov (United States)

    Jiang, Zuodong; Kempinski, Chase; Chappell, Joe

    2016-01-01

    Terpenes/terpenoids constitute one of the largest classes of natural products, this is due to the incredible chemical diversity that can arise from the biochemical transformations of the relatively simple prenyl diphosphate starter units. All terpenes/terpenoids comprise a hydrocarbon backbone that is generated from the various length prenyl diphosphates (a polymer chain of prenyl units). Upon ionization (removal) of the diphosphate group, the remaining allylic carbocation intermediates can be coaxed down complex chemical cascades leading to diverse linear and cyclized hydrocarbon backbones, which can then be further modified with a wide range of functional groups (e.g. alcohol, ketones, etc.) and substituent additions (e.g. sugars, fatty acids). Because of this chemical diversity, terpenes/terpenoids have great industrial uses as flavors, fragrances, high grade lubricants, biofuels, agricultural chemicals and medicines. The protocols presented here focus on the extraction of terpenes/terpenoids from various plant sources and have been divided into extraction methods for terpenes/terpenoids with various levels of chemical decoration, from the relative small, nonpolar, volatile hydrocarbons to substantially large molecules with greater physical complexity due to their chemical modifications.

  18. Qualitative analysis of hexane flour extract of spelt

    Directory of Open Access Journals (Sweden)

    Vujić Đura N.

    2013-01-01

    Full Text Available Gas chromatography with mass spectrometry (GC-MS was used for performing a qualitative analysis of the hexane flour extract of three samples of spelt. All the three samples were first treated with hexane and the obtained extracts were used for the analysis of the fatty acid lipid components. The transesterification reaction was performed using TMSH (trimethylsulfonium hydroxide, 0.2M in methanol, and the fatty acids were esterified from acylglycerol to methyl-esters. In all analyzed extracts, the predominant component was methyl linoleate, followed by methyl oleate and methyl palmitate. The subsequent tests, performed by cluster analysis, were used to compare the hexane flour extracts of different types of spelt. [Projekat Ministarstva nauke Republike Srbije, br. III46005 i br. TR 31066

  19. Sono-assisted extraction of alcohol-insoluble extract from Althaea rosea: purification and chemical analysis.

    Science.gov (United States)

    Eskandari, Meghdad; Samavati, Vahid

    2015-01-01

    A Box-Behnken design (BBD) was used to evaluate the effects of ultrasonic power, extraction time, extraction temperature, and water to raw material ratio on extraction yield of alcohol-insoluble polysaccharide of Althaea rosea leaf (ARLP). Purification was carried out by dialysis method. Chemical analysis of ARLP revealed contained 12.69 ± 0.48% moisture, 79.33 ± 0.51% total sugar, 3.82 ± 0.21% protein, 11.25 ± 0.37% uronic acid and 3.77 ± 0.15% ash. The response surface methodology (RSM) showed that the significant quadratic regression equation with high R(2) (=0.9997) was successfully fitted for extraction yield of ARLP as function of independent variables. The overall optimum region was found to be at the combined level of ultrasonic power 91.85 W, extraction time 29.94 min, extraction temperature 89.78 °C, and the ratio of water to raw material 28.77 (mL/g). At this optimum point, extraction yield of ARLP was 19.47 ± 0.41%. No significant (p>0.05) difference was found between the actual and predicted (19.30 ± 0.075%) values. The results demonstrated that ARLP had strong scavenging activities on DPPH and hydroxyl radicals.

  20. Analysis of Platelet-Rich Plasma Extraction

    Science.gov (United States)

    Fitzpatrick, Jane; Bulsara, Max K.; McCrory, Paul Robert; Richardson, Martin D.; Zheng, Ming Hao

    2017-01-01

    Background: Platelet-rich plasma (PRP) has been extensively used as a treatment in tissue healing in tendinopathy, muscle injury, and osteoarthritis. However, there is variation in methods of extraction, and this produces different types of PRP. Purpose: To determine the composition of PRP obtained from 4 commercial separation kits, which would allow assessment of current classification systems used in cross-study comparisons. Study Design: Controlled laboratory study. Methods: Three normal adults each donated 181 mL of whole blood, some of which served as a control and the remainder of which was processed through 4 PRP separation kits: GPS III (Biomet Biologics), Smart-Prep2 (Harvest Terumo), Magellan (Arteriocyte Medical Systems), and ACP (Device Technologies). The resultant PRP was tested for platelet count, red blood cell count, and white blood cell count, including differential in a commercial pathology laboratory. Glucose and pH measurements were obtained from a blood gas autoanalyzer machine. Results: Three kits taking samples from the “buffy coat layer” were found to have greater concentrations of platelets (3-6 times baseline), while 1 kit taking samples from plasma was found to have platelet concentrations of only 1.5 times baseline. The same 3 kits produced an increased concentration of white blood cells (3-6 times baseline); these consisted of neutrophils, leukocytes, and monocytes. This represents high concentrations of platelets and white blood cells. A small drop in pH was thought to relate to the citrate used in the sample preparation. Interestingly, an unexpected increase in glucose concentrations, with 3 to 6 times greater than baseline levels, was found in all samples. Conclusion: This study reveals the variation of blood components, including platelets, red blood cells, leukocytes, pH, and glucose in PRP extractions. The high concentrations of cells are important, as the white blood cell count in PRP samples has frequently been ignored

  1. An easy guide to factor analysis

    CERN Document Server

    Kline, Paul

    2014-01-01

    Factor analysis is a statistical technique widely used in psychology and the social sciences. With the advent of powerful computers, factor analysis and other multivariate methods are now available to many more people. An Easy Guide to Factor Analysis presents and explains factor analysis as clearly and simply as possible. The author, Paul Kline, carefully defines all statistical terms and demonstrates step-by-step how to work out a simple example of principal components analysis and rotation. He further explains other methods of factor analysis, including confirmatory and path analysis, a

  2. Signs and symptoms of acute mania: a factor analysis

    Directory of Open Access Journals (Sweden)

    de Silva Varuni A

    2011-08-01

    Full Text Available Abstract Background The major diagnostic classifications consider mania as a uni-dimensional illness. Factor analytic studies of acute mania are fewer compared to schizophrenia and depression. Evidence from factor analysis suggests more categories or subtypes than what is included in the classification systems. Studies have found that these factors can predict differences in treatment response and prognosis. Methods The sample included 131 patients consecutively admitted to an acute psychiatry unit over a period of one year. It included 76 (58% males. The mean age was 44.05 years (SD = 15.6. Patients met International Classification of Diseases-10 (ICD-10 clinical diagnostic criteria for a manic episode. Patients with a diagnosis of mixed bipolar affective disorder were excluded. Participants were evaluated using the Young Mania Rating Scale (YMRS. Exploratory factor analysis (principal component analysis was carried out and factors with an eigenvalue > 1 were retained. The significance level for interpretation of factor loadings was 0.40. The unrotated component matrix identified five factors. Oblique rotation was then carried out to identify three factors which were clinically meaningful. Results Unrotated principal component analysis extracted five factors. These five factors explained 65.36% of the total variance. Oblique rotation extracted 3 factors. Factor 1 corresponding to 'irritable mania' had significant loadings of irritability, increased motor activity/energy and disruptive aggressive behaviour. Factor 2 corresponding to 'elated mania' had significant loadings of elevated mood, language abnormalities/thought disorder, increased sexual interest and poor insight. Factor 3 corresponding to 'psychotic mania' had significant loadings of abnormalities in thought content, appearance, poor sleep and speech abnormalities. Conclusions Our findings identified three clinically meaningful factors corresponding to 'elated mania', 'irritable mania

  3. Lignin extraction--reassessment of the severity factor with respect to hydroxide concentration.

    Science.gov (United States)

    Lee, Roland A; Berberi, Veronique; Labranche, Joey; Lavoie, Jean-Michel

    2014-10-01

    Steam processes have often been associated with a severity factor, correlating the cooking temperature, time and catalyst used in the process. Although equations for treatments with and without acid catalyst have been suggested, there is so far no simple equation allowing a precise estimation of the amount of lignin extracted from lignocellulosic biomass. In this work, a new version of the severity factor equation is proposed. This has been shown to correlate effectively to the amount of lignin extracted from various types of lignocellulosic materials and different extraction methods. The resulting severity factor is robust with potential to be utilized both for acid and base-catalyzed extraction of lignin. Finally, the proposed correlation between the severity factor and extracted lignin under base conditions has been correlated with empirical data to validate the entire model and especially under mild condition where lesser information was available from open literature. Copyright © 2014 Elsevier Ltd. All rights reserved.

  4. Optimization of an effective extraction procedure for the analysis of microcystins in soils and lake sediments

    Energy Technology Data Exchange (ETDEWEB)

    Chen Wei [State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072 (China); Graduate School of Chinese Academy of Sciences, Beijing 100049 (China); Li Lin [State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072 (China); Gan Nanqin [State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072 (China); Song Lirong [State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072 (China)]. E-mail: lrsong@ihb.ac.cn

    2006-09-15

    Microcystin analysis in sediments and soils is considered very difficult due to low recovery for extraction. This is the primary limiting factor for understanding the fate of toxins in the interface between water and sediment in both the aquatic ecosystem as well as in soils. In the present study, a wide range of extraction solvents were evaluated over a wide range of pH, extraction approaches and equilibration time to optimize an effective extraction procedure for the analysis of microcystins in soils and lake sediments. The number of extractions required and acids in extraction solutions were also studied. In this procedure, EDTA-sodium pyrophosphate solution was selected as an extraction solvent based on the adsorption mechanism study. The optimized procedure proved to be highly efficient and achieved over 90% recovery. Finally, the developed procedure was applied to field soil and sediment sample collected from Chinese lakes during bloom seasons and microcystins were determined in six of ten samples. - Efficiency of extraction of microcystins from soil and sediment was greatly increased.

  5. The Stylistic Analysis of an Extract from The Rainbow

    Institute of Scientific and Technical Information of China (English)

    王海燕

    2012-01-01

      This paper makes a detailed stylistic analysis of an extract from The Rainbow by Lawrence based on lexical features, grammatical features and figure of speech. Through the analysis, a better aesthetic appreciation and deeper understanding of the novel will be achieved.

  6. Solid-phase extraction procedures in systematic toxicological analysis

    NARCIS (Netherlands)

    Franke, J.P.; de Zeeuw, R.A

    1998-01-01

    In systematic toxicological analysis (STA) the substance(s) present is (are) not known at the start of the analysis. in such an undirected search the extraction procedure cannot be directed to a given substance but must be a general procedure where a compromise must be reached in that the substances

  7. Retinal image analysis: preprocessing and feature extraction

    Energy Technology Data Exchange (ETDEWEB)

    Marrugo, Andres G; Millan, Maria S, E-mail: andres.marrugo@upc.edu [Grup d' Optica Aplicada i Processament d' Imatge, Departament d' Optica i Optometria Univesitat Politecnica de Catalunya (Spain)

    2011-01-01

    Image processing, analysis and computer vision techniques are found today in all fields of medical science. These techniques are especially relevant to modern ophthalmology, a field heavily dependent on visual data. Retinal images are widely used for diagnostic purposes by ophthalmologists. However, these images often need visual enhancement prior to apply a digital analysis for pathological risk or damage detection. In this work we propose the use of an image enhancement technique for the compensation of non-uniform contrast and luminosity distribution in retinal images. We also explore optic nerve head segmentation by means of color mathematical morphology and the use of active contours.

  8. 人类精液 DNA 提取方法的探讨及影响因素分析▲%Discussion on Extraction of Human Semen DNA and Analysis of Its Influencing Factors

    Institute of Scientific and Technical Information of China (English)

    覃莉; 江莉; 李慕军; 吴华

    2013-01-01

    Objective To establish an optimal extraction method of high-quality human semen genomic DNA,which can provide the necessary technical support for molecular biology science of male infertility in assisted reproductive technology. Methods To extract human semen genomic DNA,we optimized the design of the experimental procedure ,and studied the factors that might have an impact on the effects of DNA extraction ,such as the initial sample type,the amount of initial sample,DTT dose,protease K(PK) digestion time,mix concussion and others.Nucleic acid quantification and agarose gel electrophoresis were used to compare the extraction effects among all groups .Results Compared with the supernatant group,the natural-stratification precipitated semen group got a higher concentration of DNA .The initial sample volume of 100 -150 μl obtained better extraction results;DNA extraction effect decreased gradually with increasing sample volume.The addition of DTT in the sample improved the yield of DNA significantly ,and the added DTT promoted DNA cleavage and extraction as well as increased the stability of DNA .The appropriate PK digestion time ranged from 5 hours to 8 hours;The short PK digestion time(12 hours) caused the degradation of DNA.The mix concussion could increase the yield of DNA while PK digestion worked.Conclusion With the initial sample volume of 100-150μl,1M DTT of 20μl added,PK digestion time of 5-8 hours,and mix concussion is performed while PK digestion works ,high-quality genomic DNA can be obtained from the natural-stratification precipitated semen .%  目的建立一种最优化的提取高质量人类精液基因组DNA的方法,为辅助生殖技术男性不育分子生物学科学研究提供技术支持。方法提取人类精液基因组DNA,优化设计实验步骤,研究初始样品类型、初始样品量、二硫苏糖醇(DTT)剂量、蛋白酶K(PK)消化时间、混匀震荡等因素对DNA的提取效果的影响,应用核酸定

  9. Analysis of higher-order aberrations (HOAs) and related factors after small incision lenticule extraction (SMILE) surgery%SMILE术后全眼高阶像差变化及相关因素分析

    Institute of Scientific and Technical Information of China (English)

    梁刚; 查旭; 张丰菊

    2015-01-01

    changes in HOAs and related factors.Methods This was a retrospective study that included 81 patients (162 eyes) who had undergone SMILE for myopia or myopic astigmatism.The follow-up period was 3 months.Ocular HOAs with a 6 mm pupil diameter were measured by a WaveScan aberrometer preoperatively and 3 months postoperatively.The angle kappa and Q value were obtained with an ocular analyzer at same time.Paired t test was used to compare the ocular variables before and after surgery.Spearman rank and Pearson correlation coefficient analysis were used to assess the relationship between changes in total HOA and different HOAs with multiple factors that included pre-SE, astigmatism, angle kappa, etc.Results Statistically significant differences were found in the changes in total HOA (t=-12.24, P<0.01), spherical aberration C40 (t=16.60, P<0.01), C31 (t=-11.06, P<0.01);C3-1 (t=-3.14, P<0.01), Q value (t=-22.55, P<0.01), Cf3 (t=-6.30, P<0.01) and C42 (t=5.84, P<0.01).There were significant correlations between total HOA at the three-month postoperative visit and preoperative SE (r=-0.23,P<0.01).△total HOA was correlated with △C40 (r=-0.40, P<0.01) and △C31 (r=0.26, P<0.01) but was not related to pre-operative Q value, angle kappa or astigmatism (P>0.05).The three-month postoperative C40 and △C40 were correlated with pre-SE (r=0.35, 0.29, P<0.01);C31 was correlated with preoperative cylinder power and Q value (r=-0.24,-0.22, P<0.05), and △C31 was correlated with preoperative cylinder power (r=-0.29, P<0.01).There was no correlation between the postoperative C3-1 and /△C3-1 and preoperative SE, Q value, angle kappa, or cylinder power (P>0.05).Conclusion A significant postoperative increase in total HOA after SMILE surgery is correlated with preoperative SE, but is not correlated with the degree of astigmatism.Postoperative C40 was only correlated with preoperative SE, while a postoperative increase in C31 was correlated with the

  10. Magnetic Solid Phase Extraction Applied to Food Analysis

    Directory of Open Access Journals (Sweden)

    Israel S. Ibarra

    2015-01-01

    Full Text Available Magnetic solid phase extraction has been used as pretreatment technique for the analysis of several compounds because of its advantages when it is compared with classic methods. This methodology is based on the use of magnetic solids as adsorbents for preconcentration of different analytes from complex matrices. Magnetic solid phase extraction minimizes the use of additional steps such as precipitation, centrifugation, and filtration which decreases the manipulation of the sample. In this review, we describe the main procedures used for synthesis, characterization, and application of this pretreatment technique which were applied in food analysis.

  11. Factors that influence the extraction of polycyclic aromatic hydrocarbons from coal

    Science.gov (United States)

    Xue, J.; Liu, Gaisheng; Niu, Z.; Chou, C.-L.; Qi, C.; Zheng, Lingyun; Zhang, H.

    2007-01-01

    Coal samples and carbonaceous mudstone were collected from the Huaibei coalfield, China, and experiments investigating the factors influencing the extraction of the sixteen US EPA (Environmental Protection Agency) priority polycyclic aromatic hydrocarbons (PAHs) were carried out. Different extraction times, solvents, and methods were used. Major interest was focused on finding optimum conditions for extracting the PAHs from coal. We conclude that (1) coal composition, including the H/C and O/C ratios, is an important factor for the distribution of PAHs in coals; (2) the total amount of EPA priority PAHs increases with increasing extraction time, 30 min being suitable for ultrasonic-assisted extraction and 24 h for Soxhlet extraction; (3) CS2 is effective in extracting low molecular weight PAHs, while CH2Cl2 is better for extracting high molecular weight PAHs (both are excellent extraction solvents vs hexane); (4) both Soxhlet and ultrasonic extraction showed a similar PAH concentration profile, but the ultrasonic method is less efficient. ?? 2007 American Chemical Society.

  12. Dry Socket following Tooth Extraction in an Iranian Dental Center: Incidence and Risk Factors Dry Socket following Tooth Extraction in an Iranian Dental Center: Incidence and Risk Factors

    Directory of Open Access Journals (Sweden)

    Majid Eshghpour

    2013-07-01

    Full Text Available Introduction: Dry Socket (DS is a common post-surgical complication following extraction of permanent teeth. Various risk factors has been mentioned for this complication including gender, age, amount of trauma during extraction, difficulty of extraction, inappropriate irrigation, infection, smoking, and oral contraceptive use. The aim of this study was to evaluate the incidence of DS among permanent teeth extraction in an Iranian Oral and Maxillofacial clinic and also to identify risk factors. Methods: This cross-sectional study performed at Mashhad Faculty of Dentistry between January 2009 and June 2009. Total of 785 patients who underwent non-surgical extraction of permanent teeth included in this study. A questionnaire with two sections designed to collect demographic, medical, and extraction-related data along with data regarding cases returning with DS. Data were reported descriptively and analyzed using Chi-square test with 95% confidence interval. Results: Total of 1073 teeth included in this study. 46.11% of patients were male and 53.89% were female. The mean age of participants was 32.68 ± 17.63 years. Total of 31 patients (2.89% were diagnosed with dry socket. Smoking and oral contraceptives intake had significant association with incidence of DS. In contrast, age, gender, medical status, tooth location, number of anesthetic carpules, anesthetic technique, pre-extraction antibiotic consumption, and academic year of students had no significant association with the incidence of DS. All cases with DS treated and were followed until resolution of DS. Conclusion: it is recommended to identify high risk groups (smokers and oral contraceptive takers when performing extraction and to perform preventive measures in these group of patients to attenuate postoperative complications.

  13. A Procedure for the supercritical fluid extraction of coal samples, with subsequent analysis of extracted hydrocarbons

    Science.gov (United States)

    Kolak, Jonathan J.

    2006-01-01

    Introduction: This report provides a detailed, step-by-step procedure for conducting extractions with supercritical carbon dioxide (CO2) using the ISCO SFX220 supercritical fluid extraction system. Protocols for the subsequent separation and analysis of extracted hydrocarbons are also included in this report. These procedures were developed under the auspices of the project 'Assessment of Geologic Reservoirs for Carbon Dioxide Sequestration' (see http://pubs.usgs.gov/fs/fs026-03/fs026-03.pdf) to investigate possible environmental ramifications associated with CO2 storage (sequestration) in geologic reservoirs, such as deep (~1 km below land surface) coal beds. Supercritical CO2 has been used previously to extract contaminants from geologic matrices. Pressure-temperature conditions within deep coal beds may render CO2 supercritical. In this context, the ability of supercritical CO2 to extract contaminants from geologic materials may serve to mobilize noxious compounds from coal, possibly complicating storage efforts. There currently exists little information on the physicochemical interactions between supercritical CO2 and coal in this setting. The procedures described herein were developed to improve the understanding of these interactions and provide insight into the fate of CO2 and contaminants during simulated CO2 injections.

  14. CHEMICAL ANALYSIS OF DENSE-GAS EXTRACTS FROM LIME FLOWERS

    Directory of Open Access Journals (Sweden)

    Demyanenko DV

    2015-04-01

    Full Text Available The purpose of this work was to make qualitative and quantitative analysis of phenolic biologically active substances (BAS in the extracts produced from lime flowers with condensed gases, using method of high-performance liquid chromatography (HPLC. Materials and methods: materials for this study were the extracts obtained by consequent processing of the herbal drug and marcs thereof with various condensed gases: difluorochloromethane (Freon R22, difluoromethane (Freon R32, azeotropic mixture of difluoromethane with pentafluoroethane (Freon 410A and freon-ammonium mixture. Extracts obtained with the latter were subjected to further fractionation by liquidliquid separation into hexane, chloroform, ethyl acetate and aqueous-alcohol phases. Besides, the supercritical СО2 extract, obtained from the herbal drug under rather strong conditions (at temperature 60°С and pressure 400 bar, was studied in our previous research. Presence of phenolic BAS and their quantity in the researched samples were determined by method of HPLC with UVspectrometric detection. Results and discussion: It has been found that Freon R22 extracted trace amounts of rutin from lime flowers – its content was only 0.08% of the total extract weight. On the other hand, Freons R32 and R410А showed good selectivity to moderately polar BAS of lime flowers (derivatives of flavonoids and hydroxycinnamic acids: in particular, the extract obtained with freon R32 contained about 1.3% of the total phenolic substances, and it was the only one of the investigated condensed gases used by us which took the basic flavonoid of lime flowers tiliroside – its content was 0.42% of extract weight. Also Freons R32 and R410А were able to withdraw another compound dominating among phenolic substances in the yielded extracts. Its quantity was rather noticeable – up to 0.87% of extract weight. This substance was not identified by existing database, but its UV-spectrum was similar to those of

  15. Direct Sampling and Analysis from Solid Phase Extraction Cards using an Automated Liquid Extraction Surface Analysis Nanoelectrospray Mass Spectrometry System

    Energy Technology Data Exchange (ETDEWEB)

    Walworth, Matthew J [ORNL; ElNaggar, Mariam S [ORNL; Stankovich, Joseph J [ORNL; WitkowskiII, Charles E. [Protein Discovery, Inc.; Norris, Jeremy L [ORNL; Van Berkel, Gary J [ORNL

    2011-01-01

    Direct liquid extraction based surface sampling, a technique previously demonstrated with continuous flow and autonomous pipette liquid microjunction surface sampling probes, has recently been implemented as the Liquid Extraction Surface Analysis (LESA) mode on the commercially available Advion NanoMate chip-based infusion nanoelectrospray ionization system. In the present paper, the LESA mode was applied to the analysis of 96-well format custom solid phase extraction (SPE) cards, with each well consisting of either a 1 or 2 mm diameter monolithic hydrophobic stationary phase. These substrate wells were conditioned, loaded with either single or multi-component aqueous mixtures, and read out using the LESA mode of a TriVersa NanoMate or a Nanomate 100 coupled to an ABI/Sciex 4000QTRAPTM hybrid triple quadrupole/linear ion trap mass spectrometer and a Thermo LTQ XL linear ion trap mass spectrometer. Extraction conditions, including extraction/nanoESI solvent composition, volume, and dwell times, were optimized in the analysis of targeted compounds. Limit of detection and quantitation as well as analysis reproducibility figures of merit were measured. Calibration data was obtained for propranolol using a deuterated internal standard which demonstrated linearity and reproducibility. A 10x increase in signal and cleanup of micromolar Angiotensin II from a concentrated salt solution was demonstrated. Additionally, a multicomponent herbicide mixture at ppb concentration levels was analyzed using MS3 spectra for compound identification in the presence of isobaric interferences.

  16. Human Factors Analysis in Software Engineering

    Institute of Scientific and Technical Information of China (English)

    Xu Ren-zuo; Ma Ruo-feng; Liu Li-na; Xiong Zhong-wei

    2004-01-01

    The general human factors analysis analyzes human functions, effects and influence in a system. But in a narrow sense, it analyzes human influence upon the reliability of a system, it includes traditional human reliability analysis, human error analysis, man-machine interface analysis, human character analysis, and others. A software development project in software engineering is successful or not to be completely determined by human factors. In this paper, we discuss the human factors intensions, declare the importance of human factors analysis for software engineering by listed some instances. At last, we probe preliminarily into the mentality that a practitioner in software engineering should possess.

  17. Analysis preliminary phytochemical raw extract of leaves Nephrolepis pectinata

    Directory of Open Access Journals (Sweden)

    Natally Marreiros Gomes

    2017-06-01

    Full Text Available The Nephrolepis pectinata popularly known as paulista fern, ladder-heaven, cat tail, belongs to the family Davalliaceae. For the beauty of the arrangements of their leaves ferns are quite commercialized in Brazil, however, have not been described in the literature studies on their pharmacological potential. Thus, the objective of this research was to analyze the phytochemical properties of the crude extract of the leaves of Nephrolepis pectinata. To perform the phytochemical analysis were initially made the collection of the vegetable, preparation of voucher specimen, washing, drying and grinding. Then, extraction by percolation method and end the phytochemical analysis. Preliminary results phytochemicals the crude extract of the leaves of Nephrolepis pectinata tested positive for reducing sugars, phenols/tannins (catechins tannins and catechins.

  18. Potential of pomegranate fruit extract (Punica granatum Linn. to increase vascular endothelial growth factor and platelet-derived growth factor expressions on the post-tooth extraction wound of Cavia cobaya

    Directory of Open Access Journals (Sweden)

    Intan Nirwana

    2017-08-01

    Full Text Available Background: Pomegranates fruit extracts have several activities, among others, anti-inflammatory, antibacterial, and antioxidants that have the main content punicalagin and ellagic acid. Pomegranate has the ability of various therapies through different mechanisms. Vascular endothelial growth factor (VEGF function was to form new blood vessels produced by various cells one of them was macrophages. Platelet-derived growth factor (PDGF was a growth factor proven chemotactic, increased fibroblast proliferation and collagen matrix production. In addition, VEGF and PDGF synergize in their ability to vascularize tissues. The PDGF function was to stabilize and regulate maturation of new blood vessels. Activities of pomegranate fruit extract were observed by measuring the increased of VEGF and PDGF expression as a marker of wound healing process. Aim: To investigate the potential of pomegranate extracts on the tooth extraction wound to increase the expression of VEGF and PDGF on the 4th day of wound healing process. Materials and Methods: This study used 12 Cavia cobaya, which were divided into two groups, namely, the provision of 3% sodium carboxymethyl cellulose and pomegranate extract. The 12 C. cobaya would be executed on the 4th day, the lower jaw of experimental animals was taken, decalcified about 30 days. The expression of VEGF and PDGF was examined using immunohistochemical techniques. The differences of VEGF and PDGF expression were evaluated statistically using t-test. Results: Statistically analysis showed that there were significant differences between control and treatment groups (p<0.05. Conclusion: Pomegranate fruit extract administration increased VEGF and PDGF expression on post-tooth extraction wound.

  19. Single corn kernel aflatoxin B1 extraction and analysis method

    Science.gov (United States)

    Aflatoxins are highly carcinogenic compounds produced by the fungus Aspergillus flavus. Aspergillus flavus is a phytopathogenic fungus that commonly infects crops such as cotton, peanuts, and maize. The goal was to design an effective sample preparation method and analysis for the extraction of afla...

  20. Preprocessing and exploratory analysis of chromatographic profiles of plant extracts

    NARCIS (Netherlands)

    Hendriks, M.M.W.B.; Cruz-Juarez, L.; Bont, de D.; Hall, R.D.

    2005-01-01

    The characterization of herbal extracts to compare samples from different origin is important for robust production and quality control strategies. This characterization is now mainly performed by analysis of selected marker compounds. Metabolic fingerprinting of full metabolite profiles of plant ex

  1. Chemical analysis of Ginkgo biloba leaves and extracts

    NARCIS (Netherlands)

    Beek, van T.A.

    2002-01-01

    The chemical analysis and quality control of Ginkgo leaves and extracts is reviewed. Important constituents present in the medicinally used leaves are the terpene trilactones, i.e., ginkgolides A, B, C, J and bilobalide, many flavonol glycosides, biflavones, proanthocyanidins, alkylphenols, simple p

  2. Measurement Bias Detection through Factor Analysis

    Science.gov (United States)

    Barendse, M. T.; Oort, F. J.; Werner, C. S.; Ligtvoet, R.; Schermelleh-Engel, K.

    2012-01-01

    Measurement bias is defined as a violation of measurement invariance, which can be investigated through multigroup factor analysis (MGFA), by testing across-group differences in intercepts (uniform bias) and factor loadings (nonuniform bias). Restricted factor analysis (RFA) can also be used to detect measurement bias. To also enable nonuniform…

  3. Investigation of factors influencing chloride extraction efficiency during electrochemical chloride extraction from reinforcing concrete

    Science.gov (United States)

    Sharp, Stephen R.

    2005-11-01

    Electrochemical chloride extraction (ECE) is an accelerated bridge restoration method similar to cathodic protection, but operates at higher current densities and utilizes a temporary installation. Both techniques prolong the life of a bridge by reducing the corrosion rate of the reinforcing bar when properly applied. ECE achieves this by moving chlorides away from the reinforcement and out of the concrete while simultaneously increasing the alkalinity of the electrolyte near the reinforcing steel. Despite the proven success, significant use of ECE has not resulted in part due to an incomplete understanding in the following areas: (1) An estimation of the additional service life that can be expected following treatment when the treated member is again subjected to chlorides; (2) The cause of the decrease in current flow and, therefore, chloride removal rate during treatment; (3) Influence of water-to-cement (w/c) ratio and cover depth on the time required for treatment. This dissertation covers the research that is connected to the last two areas listed above. To begin examining these issues, plain carbon steel reinforcing bars (rebar) were embedded in portland cement concrete slabs of varying water-to-cement (w/c) ratios and cover depths, and then exposed to chlorides. A fraction of these slabs had sodium chloride added as an admixture, with all of the slabs subjected to cyclical ponding with a saturated solution of sodium chloride. ECE was then used to remove the chlorides from these slabs while making electrical measurements in the different layers between the rebar (cathode) and the titanium mat (anode) to follow the progress of the ECE process. During this study, it was revealed that the resistance of the outer concrete surface layer increases during ECE, inevitably restricting current flow, while the resistance of the underlying concrete decreases or remains constant. During ECE treatment, a white residue formed on the surface of the concrete. Analyses of the

  4. Rapid automatic keyword extraction for information retrieval and analysis

    Science.gov (United States)

    Rose, Stuart J [Richland, WA; Cowley,; E, Wendy [Richland, WA; Crow, Vernon L [Richland, WA; Cramer, Nicholas O [Richland, WA

    2012-03-06

    Methods and systems for rapid automatic keyword extraction for information retrieval and analysis. Embodiments can include parsing words in an individual document by delimiters, stop words, or both in order to identify candidate keywords. Word scores for each word within the candidate keywords are then calculated based on a function of co-occurrence degree, co-occurrence frequency, or both. Based on a function of the word scores for words within the candidate keyword, a keyword score is calculated for each of the candidate keywords. A portion of the candidate keywords are then extracted as keywords based, at least in part, on the candidate keywords having the highest keyword scores.

  5. Design and Implementation of SMS Extraction and Analysis System

    Directory of Open Access Journals (Sweden)

    Wan Yu-Yang

    2016-01-01

    Full Text Available With more and more applications of smart phone, more and more text messages in mobile phone, and then more and more information possibly contained in text messages. How to dig out useful information form SMS? This paper discusses techniques of the SMS extraction and analysis. Taking the bank SMS as example, key information is extracted to inform, is formatted to story in APP database, and then be analysed and statistic result shown in chart. The APP with the function is run well on Android phone and has Practical value. This technology helps to expand the application of SMS.

  6. Features extraction in anterior and posterior cruciate ligaments analysis.

    Science.gov (United States)

    Zarychta, P

    2015-12-01

    The main aim of this research is finding the feature vectors of the anterior and posterior cruciate ligaments (ACL and PCL). These feature vectors have to clearly define the ligaments structure and make it easier to diagnose them. Extraction of feature vectors is obtained by analysis of both anterior and posterior cruciate ligaments. This procedure is performed after the extraction process of both ligaments. In the first stage in order to reduce the area of analysis a region of interest including cruciate ligaments (CL) is outlined in order to reduce the area of analysis. In this case, the fuzzy C-means algorithm with median modification helping to reduce blurred edges has been implemented. After finding the region of interest (ROI), the fuzzy connectedness procedure is performed. This procedure permits to extract the anterior and posterior cruciate ligament structures. In the last stage, on the basis of the extracted anterior and posterior cruciate ligament structures, 3-dimensional models of the anterior and posterior cruciate ligament are built and the feature vectors created. This methodology has been implemented in MATLAB and tested on clinical T1-weighted magnetic resonance imaging (MRI) slices of the knee joint. The 3D display is based on the Visualization Toolkit (VTK).

  7. Evolution of Analysis of Polyhenols from Grapes, Wines, and Extracts

    Directory of Open Access Journals (Sweden)

    Pierre-Louis Teissedre

    2013-01-01

    Full Text Available Grape and wine phenolics are structurally diverse, from simple molecules to oligomers and polymers usually designated as tannins. They have an important impact on the organoleptic properties of wines, that’s why their analysis and quantification are of primordial importance. The extraction of phenolics from grapes and from wines is the first step involved in the analysis. Then, several analytical methods have been developed for the determination of total content of phenolic, while chromatographic and spectrophotometric analyses are continuously improved in order to achieve adequate separation of phenolic molecules, their subsequent identification and quantification. This review provides a summary of evolution of analysis of polyphenols from grapes, wines and extracts.

  8. Social network extraction and analysis based on multimodal dyadic interaction.

    Science.gov (United States)

    Escalera, Sergio; Baró, Xavier; Vitrià, Jordi; Radeva, Petia; Raducanu, Bogdan

    2012-01-01

    Social interactions are a very important component in people's lives. Social network analysis has become a common technique used to model and quantify the properties of social interactions. In this paper, we propose an integrated framework to explore the characteristics of a social network extracted from multimodal dyadic interactions. For our study, we used a set of videos belonging to New York Times' Blogging Heads opinion blog. The Social Network is represented as an oriented graph, whose directed links are determined by the Influence Model. The links' weights are a measure of the "influence" a person has over the other. The states of the Influence Model encode automatically extracted audio/visual features from our videos using state-of-the art algorithms. Our results are reported in terms of accuracy of audio/visual data fusion for speaker segmentation and centrality measures used to characterize the extracted social network.

  9. Social Network Extraction and Analysis Based on Multimodal Dyadic Interaction

    Directory of Open Access Journals (Sweden)

    Bogdan Raducanu

    2012-02-01

    Full Text Available Social interactions are a very important component in people’s lives. Social network analysis has become a common technique used to model and quantify the properties of social interactions. In this paper, we propose an integrated framework to explore the characteristics of a social network extracted from multimodal dyadic interactions. For our study, we used a set of videos belonging to New York Times’ Blogging Heads opinion blog. The Social Network is represented as an oriented graph, whose directed links are determined by the Influence Model. The links’ weights are a measure of the “influence” a person has over the other. The states of the Influence Model encode automatically extracted audio/visual features from our videos using state-of-the art algorithms. Our results are reported in terms of accuracy of audio/visual data fusion for speaker segmentation and centrality measures used to characterize the extracted social network.

  10. Microscale extraction method for HPLC carotenoid analysis in vegetable matrices

    Directory of Open Access Journals (Sweden)

    Sidney Pacheco

    2014-10-01

    Full Text Available In order to generate simple, efficient analytical methods that are also fast, clean, and economical, and are capable of producing reliable results for a large number of samples, a micro scale extraction method for analysis of carotenoids in vegetable matrices was developed. The efficiency of this adapted method was checked by comparing the results obtained from vegetable matrices, based on extraction equivalence, time required and reagents. Six matrices were used: tomato (Solanum lycopersicum L., carrot (Daucus carota L., sweet potato with orange pulp (Ipomoea batatas (L. Lam., pumpkin (Cucurbita moschata Duch., watermelon (Citrullus lanatus (Thunb. Matsum. & Nakai and sweet potato (Ipomoea batatas (L. Lam. flour. Quantification of the total carotenoids was made by spectrophotometry. Quantification and determination of carotenoid profiles were formulated by High Performance Liquid Chromatography with photodiode array detection. Microscale extraction was faster, cheaper and cleaner than the commonly used one, and advantageous for analytical laboratories.

  11. Molecularly Imprinted Polymers for Ochratoxin A Extraction and Analysis

    Directory of Open Access Journals (Sweden)

    Jorn C. C. Yu

    2010-06-01

    Full Text Available Molecularly imprinted polymers (MIPs are considered as polymeric materials that mimic the functionality of antibodies. MIPs have been utilized for a wide variety of applications in chromatography, solid phase extraction, immunoassays, and sensor recognition. In this article, recent advances of MIPs for the extraction and analysis of ochratoxins are discussed. Selection of functional monomers to bind ochratoxin A (OTA with high affinities, optimization of extraction procedures, and limitations of MIPs are compared from different reports. The most relevant examples in the literature are described to clearly show how useful these materials are. Strategies on MIP preparation and schemes of analytical methods are also reviewed in order to suggest the next step that would make better use of MIPs in the field of ochratoxin research. The review ends by outlining the remaining issues and impediments.

  12. Workplace Innovation: Exploratory and Confirmatory Factor Analysis for Construct Validation

    Directory of Open Access Journals (Sweden)

    Wipulanusat Warit

    2017-06-01

    Full Text Available Workplace innovation enables the development and improvement of products, processes and services leading simultaneously to improvement in organisational performance. This study has the purpose of examining the factor structure of workplace innovation. Survey data, extracted from the 2014 APS employee census, comprising 3,125 engineering professionals in the Commonwealth of Australia’s departments were analysed using exploratory factor analysis (EFA and confirmatory factor analysis (CFA. EFA returned a two-factor structure explaining 69.1% of the variance of the construct. CFA revealed that a two-factor structure was indicated as a validated model (GFI = 0.98, AGFI = 0.95, RMSEA = 0.08, RMR = 0.02, IFI = 0.98, NFI = 0.98, CFI = 0.98, and TLI = 0.96. Both factors showed good reliability of the scale (Individual creativity: α = 0.83, CR = 0.86, and AVE = 0.62; Team Innovation: α = 0.82, CR = 0.88, and AVE = 0.61. These results confirm that the two factors extracted for characterising workplace innovation included individual creativity and team innovation.

  13. Landslide stability analysis on basis of LIDAR data extraction

    Science.gov (United States)

    Hu, Hui; Fernandez-Steeger, Tomas M.; Dong, Mei; Azzam, Rafig

    2010-05-01

    important role during surface construction for further more precise analysis purpose. 3D geological model can be built based on the connection between surface model and geological data like borehole data in GOCAD. Regarding the bench stability analysis, LEM (Limit Equilibrium Method) analysis using Janbu and FEM (Finite Element Method) have been adopted during this analyzing task. A program was developed to convert GOCAD 2D section data directly into the FEM software. The meshed model is then used for stability analysis. In one quarry, 3 cross sections have been extracted on basis of LIDAR original data (original 3 cross sections). To evaluate the advantages of LIDAR data for slope analysis, the results of safety factor (SF) were compared to simplified slope models as they are used normally. The comparison showed that variations of the SF reach up to 9%. Additionally, conservative evaluation demonstrated by SF results based on simplified model is not adaptive for decision making of filling.

  14. The ultrasonic-enhanced factor of mass-transfer coefficient in the supercritical carbon dioxide extraction

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Based on several hypotheses about the process of supercritical carbon dioxide extraction, the onflow around the solute granule is figured out by the Navier-Stocks equation. In combination with the Higbie’s solute infiltration model, the link be-tween the mass-transfer coefficient and the velocity of flow is found. The mass-transfer coefficient with the ultrasonical effect is compared with that without the ultrasonical effect, and then a new parameter named the ultrasonic-enhanced fac-tor of mass-transfer coefficient is brought forward, which describes the mathe-matical model of the supercritical carbon dioxide extraction process enhanced by ultrasonic. The model gives out the relationships among the ultrasonical power, the ultrasonical frequency, the radius of solute granule and the ultrasonic-enhanced factor of mass-transfer coefficient. The results calculated by this model fit well with the experimental data, including the extraction of Coix Lacryma-jobi Seed Oil (CLSO) and Coix Lacryma-jobi Seed Ester (CLSE) from coix seeds and the extrac-tion of Eicosapentaenoic Acid (EPA) and Docosahexaenoic Acid (DHA) from the alga by means of the ultrasonic-enhanced supercritical carbon dioxide extraction (USFE) and the supercritical carbon dioxide extraction (SFE) respectively. This proves the rationality of the ultrasonic-enhanced factor model. The model provides a theoretical basis for the application of ultrasonic-enhanced supercritical fluid extraction technique.

  15. DNA extraction protocol for biological ingredient analysis of Liuwei Dihuang Wan.

    Science.gov (United States)

    Cheng, Xinwei; Chen, Xiaohua; Su, Xiaoquan; Zhao, Huanxin; Han, Maozhen; Bo, Cunpei; Xu, Jian; Bai, Hong; Ning, Kang

    2014-06-01

    Traditional Chinese medicine (TCM) preparations are widely used for healthcare and clinical practice. So far, the methods commonly used for quality evaluation of TCM preparations mainly focused on chemical ingredients. The biological ingredient analysis of TCM preparations is also important because TCM preparations usually contain both plant and animal ingredients, which often include some mis-identified herbal materials, adulterants or even some biological contaminants. For biological ingredient analysis, the efficiency of DNA extraction is an important factor which might affect the accuracy and reliability of identification. The component complexity in TCM preparations is high, and DNA might be destroyed or degraded in different degrees after a series of processing procedures. Therefore, it is necessary to establish an effective protocol for DNA extraction from TCM preparations. In this study, we chose a classical TCM preparation, Liuwei Dihuang Wan (LDW), as an example to develop a TCM-specific DNA extraction method. An optimized cetyl trimethyl ammonium bromide (CTAB) method (TCM-CTAB) and three commonly-used extraction kits were tested for extraction of DNA from LDW samples. Experimental results indicated that DNA with the highest purity and concentration was obtained by using TCM-CTAB. To further evaluate the different extraction methods, amplification of the second internal transcribed spacer (ITS2) and the chloroplast genome trnL intron was carried out. The results have shown that PCR amplification was successful only with template of DNA extracted by using TCM-CTAB. Moreover, we performed high-throughput 454 sequencing using DNA extracted by TCM-CTAB. Data analysis showed that 3-4 out of 6 prescribed species were detected from LDW samples, while up to 5 contaminating species were detected, suggesting TCM-CTAB method could facilitate follow-up DNA-based examination of TCM preparations. Copyright © 2014. Production and hosting by Elsevier Ltd.

  16. DNA Extraction Protocol for Biological Ingredient Analysis of Liuwei Dihuang Wan

    Institute of Scientific and Technical Information of China (English)

    Xinwei Cheng; Xiaohua Chen; Xiaoquan Su; Huanxin Zhao; Maozhen Han; Cunpei Bo; Jian Xu; Hong Bai; Kang Ning

    2014-01-01

    Traditional Chinese medicine (TCM) preparations are widely used for healthcare and clinical practice. So far, the methods commonly used for quality evaluation of TCM preparations mainly focused on chemical ingredients. The biological ingredient analysis of TCM preparations is also important because TCM preparations usually contain both plant and animal ingredients, which often include some mis-identified herbal materials, adulterants or even some biological con-taminants. For biological ingredient analysis, the efficiency of DNA extraction is an important fac-tor which might affect the accuracy and reliability of identification. The component complexity in TCM preparations is high, and DNA might be destroyed or degraded in different degrees after a series of processing procedures. Therefore, it is necessary to establish an effective protocol for DNA extraction from TCM preparations. In this study, we chose a classical TCM preparation, Liuwei Dihuang Wan (LDW), as an example to develop a TCM-specific DNA extraction method. An optimized cetyl trimethyl ammonium bromide (CTAB) method (TCM-CTAB) and three com-monly-used extraction kits were tested for extraction of DNA from LDW samples. Experimental results indicated that DNA with the highest purity and concentration was obtained by using TCM-CTAB. To further evaluate the different extraction methods, amplification of the second internal transcribed spacer (ITS2) and the chloroplast genome trnL intron was carried out.The results have shown that PCR amplification was successful only with template of DNA extracted by using TCM-CTAB. Moreover, we performed high-throughput 454 sequencing using DNA extracted by TCM-CTAB. Data analysis showed that 3-4 out of 6 prescribed species were detected from LDW samples, while up to 5 contaminating species were detected, suggesting TCM-CTAB method could facilitate follow-up DNA-based examination of TCM preparations.

  17. Chemically extracted acellular allogeneic nerve graft combined with ciliary neurotrophic factor promotes sciatic nerve repair

    Institute of Scientific and Technical Information of China (English)

    Yanru Zhang; Hui Zhang; Kaka Katiella; Wenhua Huang

    2014-01-01

    A chemically extracted acellular allogeneic nerve graft can reduce postoperative immune re-jection, similar to an autologous nerve graft, and can guide neural regeneration. However, it remains poorly understood whether a chemically extracted acellular allogeneic nerve graft combined with neurotrophic factors provides a good local environment for neural regenera-tion. This study investigated the repair of injured rat sciatic nerve using a chemically extracted acellular allogeneic nerve graft combined with ciliary neurotrophic factor. An autologous nerve anastomosis group and a chemical acellular allogeneic nerve bridging group were prepared as controls. At 8 weeks after repair, sciatic functional index, evoked potential amplitude of the soleus muscle, triceps wet weight recovery rate, total number of myelinated nerve fibers and myelin sheath thickness were measured. For these indices, values in the three groups showed the autologous nerve anastomosis group > chemically extracted acellular nerve graft + ciliary neurotrophic factor group > chemical acellular allogeneic nerve bridging group. These results suggest that chemically extracted acellular nerve grafts combined with ciliary neurotrophic factor can repair sciatic nerve defects, and that this repair is inferior to autologous nerve anasto-mosis, but superior to chemically extracted acellular allogeneic nerve bridging alone.

  18. Developmental Coordination Disorder: Validation of a Qualitative Analysis Using Statistical Factor Analysis

    Directory of Open Access Journals (Sweden)

    Kathy Ahern

    2002-09-01

    Full Text Available This study investigates triangulation of the findings of a qualitative analysis by applying an exploratory factor analysis to themes identified in a phenomenological study. A questionnaire was developed from a phenomenological analysis of parents' experiences of parenting a child with Developmental Coordination Disorder (DCD. The questionnaire was administered to 114 parents of DCD children and data were analyzed using an exploratory factor analysis. The extracted factors provided support for the validity of the original qualitative analysis, and a commentary on the validity of the process is provided. The emerging description is of the compromises that were necessary to translate qualitative themes into statistical factors, and of the ways in which the statistical analysis suggests further qualitative study.

  19. The decision to extract: part II. Analysis of clinicians' stated reasons for extraction.

    Science.gov (United States)

    Baumrind, S; Korn, E L; Boyd, R L; Maxwell, R

    1996-04-01

    In a recently reported study, the pretreatment records of each subject in a randomized clinical trial of 148 patients with Class I and Class II malocclusions presenting for orthodontic treatment were evaluated independently by five experienced clinicians (drawn from a panel of 14). The clinicians displayed a higher incidence of agreement with each other than had been expected with respect to the decision as to whether extraction was indicated in each specific case. To improve our understanding of how clinicians made their decisions on whether to extract or not, the records of a subset of 72 subjects randomly selected from the full sample of 148, have now been examined in greater detail. In 21 of these cases, all five clinicians decided to treat without extraction. Among the remaining 51 cases, there were 202 decisions to extract (31 unanimous decision cases and 20 split decision cases). The clinicians cited a total of 469 reasons to support these decisions. Crowding was cited as the first reason in 49% of decisions to extract, followed by incisor protrusion (14%), need for profile correction (8%), Class II severity (5%), and achievement of a stable result (5%). When all the reasons for extraction in each clinician's decision were considered as a group, crowding was cited in 73% of decisions, incisor protrusion in 35%, need for profile correction in 27%, Class II severity in 15% and posttreatment stability in 9%. Tooth size anomalies, midline deviations, reduced growth potential, severity of overjet, maintenance of existing profile, desire to close the bite, periodontal problems, and anticipation of poor cooperation accounted collectively for 12% of the first reasons and were mentioned in 54% of the decisions, implying that these considerations play a consequential, if secondary, role in the decision-making process. All other reasons taken together were mentioned in fewer than 20% of cases. In this sample at least, clinicians focused heavily on appearance

  20. Ground extraction from airborne laser data based on wavelet analysis

    Science.gov (United States)

    Xu, Liang; Yang, Yan; Jiang, Bowen; Li, Jia

    2007-11-01

    With the advantages of high resolution and accuracy, airborne laser scanning data are widely used in topographic mapping. In order to generate a DTM, measurements from object features such as buildings, vehicles and vegetation have to be classified and removed. However, the automatic extraction of bare earth from point clouds acquired by airborne laser scanning equipment remains a problem in LIDAR data filtering nowadays. In this paper, a filter algorithm based on wavelet analysis is proposed. Relying on the capability of detecting discontinuities of continuous wavelet transform and the feature of multi-resolution analysis, the object points can be removed, while ground data are preserved. In order to evaluate the performance of this approach, we applied it to the data set used in the ISPRS filter test in 2003. 15 samples have been tested by the proposed approach. Results showed that it filtered most of the objects like vegetation and buildings, and extracted a well defined ground model.

  1. Blind Extraction and Security Analysis of Spread Spectrum Hidden Watermarks

    Science.gov (United States)

    2012-04-01

    DATES COVERED (From - To) JAN 2009 – DEC 2010 4. TITLE AND SUBTITLE BLIND EXTRACTION AND SECURITY ANALYSIS OF SPREAD SPECTRUM HIDDEN WATERMARKS ...Multi Signature Embedding, Watermarking , DSSS. 16. SECURITY CLASSIFICATION OF: 17. LIMITATION OF ABSTRACT UU 18. NUMBER OF PAGES 15 19a... watermarks John A. Marsh*a,b, and Gerard F. Wohlrabc aSUNY Institute of Technology, 100 Seymour Dr., Utica, NY 13502; bAssured Information

  2. Extraction of the Compton Form Factor H from DVCS measurements at Jefferson Lab

    Energy Technology Data Exchange (ETDEWEB)

    Moutarde, H

    2009-05-01

    In the framework of Generalised Parton Distributions, we study the helicity-dependent and independent cross sections measured in Hall A and the beam spin asymmetries measured in Hall B at Jefferson Laboratory. We perform a global fit of these data and fits on each kinematical bin. We extract the real and imaginary parts of the Compton Form Factor $\\mathcal{H}$ under the main hypothesis of dominance of the Generalised Parton Distribution $H$ and twist 2 accuracy. We discuss our results and compare to previous extractions as well as to the VGG model. We pay extra attention to the estimation of errors on the extraction of $\\mathcal{H}$.

  3. Statistical inference of Minimum Rank Factor Analysis

    NARCIS (Netherlands)

    Shapiro, A; Ten Berge, JMF

    2002-01-01

    For any given number of factors, Minimum Rank Factor Analysis yields optimal communalities for an observed covariance matrix in the sense that the unexplained common variance with that number of factors is minimized, subject to the constraint that both the diagonal matrix of unique variances and the

  4. Statistical inference of Minimum Rank Factor Analysis

    NARCIS (Netherlands)

    Shapiro, A; Ten Berge, JMF

    For any given number of factors, Minimum Rank Factor Analysis yields optimal communalities for an observed covariance matrix in the sense that the unexplained common variance with that number of factors is minimized, subject to the constraint that both the diagonal matrix of unique variances and the

  5. Best practices in exploratory factor analysis: four recommendations for getting the most from your analysis.

    Directory of Open Access Journals (Sweden)

    Anna B. Costello

    2005-07-01

    Full Text Available Exploratory factor analysis (EFA is a complex, multi-step process. The goal of this paper is..to collect, in one article, information that will allow researchers and practitioners to..understand the various choices available through popular software packages, and to make..decisions about - best practices- in exploratory factor analysis. In particular, this paper..provides practical information on making decisions regarding (a extraction, (b rotation, (c..the number of factors to interpret, and (d sample size.

  6. PROGNOSTIC FACTORS ANALYSIS FOR STAGEⅠ RECTAL CANCER

    Institute of Scientific and Technical Information of China (English)

    武爱文; 顾晋; 薛钟麒; 王怡; 徐光炜

    2001-01-01

    To explore the death-related factors of stageⅠrectal cancer patients. Methods: 89 cases of stage I rectal cancer patients between 1985 and 2000 were retrospectively studied for prognostic factors. Factors including age, gender, tumor size, circumferential occupation, gross type, pathological type, depth of tumor invasion, surgical procedure, adjuvant chemotherapy and postoperative complication were chosen for cox multivariate analysis (forward procedure) using Spss software (10.0 version). Results: multivariate analysis demonstrated that muscular invasion was an independent negative prognostic factor for stageⅠrectal cancer patients (P=0.003). Conclusion: Muscular invasion is a negative prognostic factor for stage I rectal cancer patients.

  7. A factor analysis to find critical success factors in retail brand

    Directory of Open Access Journals (Sweden)

    Naser Azad

    2013-03-01

    Full Text Available The present exploratory study aims to find critical components of retail brand among some retail stores. The study seeks to build a brand name in retail level and looks to find important factors affecting it. Customer behavior is largely influenced when the first retail customer experience is formed. These factors have direct impacts on customer experience and satisfaction in retail industry. The proposed study performs an empirical investigation on two well-known retain stores located in city of Tehran, Iran. Using a sample of 265 people from regular customers, the study uses factor analysis and extracts four main factors including related brand, product benefits, customer welfare strategy and corporate profits using the existing 31 factors in the literature.

  8. User Suggestions Extraction from customer Reviews A Sentiment Analysis approach

    Directory of Open Access Journals (Sweden)

    Vishwanath.J,

    2011-03-01

    Full Text Available Customer review is a major criterion for the improvement of the quality of services rendered and enhancement of the deliverables. Blogs, articles and discussion forums, provide manufacturers or sellers with a good understanding of the reception level of their products in the competitive market. An interesting area from the business analysis perspective, this paper discusses an opinion based mining technique for the extraction of the relevant data using Natural Language Processing and text analysis, and comprehends suggestions from an actionable feedback.

  9. Cow placenta extract promotes murine hair growth through enhancing the insulin - like growth factor-1

    Directory of Open Access Journals (Sweden)

    Dongliang Zhang

    2011-01-01

    Full Text Available Background: Hair loss is seen as an irreversible process. Most research concentrates on how to elongate the anagen, reduce the negative factors of obstructing hair growth and improve the hair number and size. Aim: In our experiment, we tried to prove that the cow placenta extract can promote hair growth by elongating hair shaft and increasing hair follicle number. Materials and Methods: Cow placenta extract (CPE, water and minoxidil applied separately on the back of depilated B57CL/6 mice for the case, negative and positive control respectively. We checked the proliferation of cells which are resident in hair sheath, and the expression of a few growth factors which stimulate hair growth. Results: Result shows that placenta extract more efficiently accelerates cell division and growth factor expression, by raising the insulin-like growth factor (IGF-1 mRNA and protein level to increase HF size and hair length. Conclusions: The extract is not a purified product; so, it is less effective than minoxidil, which is approved by the US FDA for the treatment of male pattern baldness. If refinement is done, the placenta extract would be a good candidate medicine for hair loss.

  10. Risk factors of osteonecrosis of the jaw after tooth extraction in osteoporotic patients on oral bisphosphonates

    Energy Technology Data Exchange (ETDEWEB)

    Jeong, Ho Gui; Hwang, Jae Joon; Lee, Jeong Hee; Kim, Young Hyun; Na, Ji Yeon; Han, Sang Sun [Dept. of Oral and Maxillofacial Radiology, Yonsei University, College of Dentistry, Seoul (Korea, Republic of)

    2017-03-15

    The aim of this study was to investigate the incidence of bisphosphonate-related osteonecrosis of the jaw (BRONJ) after tooth extraction in patients with osteoporosis on oral bisphosphonates in Korea and to evaluate local factors affecting the development of BRONJ. The clinical records of 320 patients who underwent dental extraction while receiving oral bisphosphonates were reviewed. All patients had a healing period of more than 6 months following the extractions. Each patient's clinical record was used to assess the incidence of BRONJ; if BRONJ occurred, a further radiographic investigation was carried out to obtain a more definitive diagnosis. Various local factors including age, gender, extraction site, drug type, duration of administration, and C-terminal telopeptide (CTx) level were retrieved from the patients' clinical records for evaluating their effect on the incidence of BRONJ. Among the 320 osteoporotic patients who underwent tooth extraction, 11 developed BRONJ, reflecting an incidence rate of 3.44%. Out of the local factors that may affect the incidence of BRONJ, gender, drug type, and CTx level showed no statistically significant effects, while statistically significant associations were found for age, extraction site, and duration of administration. The incidence of BRONJ increased with age, was greater in the mandible than the maxilla, and was associated with a duration of administration of more than 3 years. Tooth extraction in patients on oral bisphosphonates requires careful consideration of their age, the extraction site, and the duration of administration, and close postoperative follow-up should be carried out to facilitate effective early management.

  11. Extraction of the isovector magnetic form factor of the nucleon at zero momentum

    CERN Document Server

    Alexandrou, Constantia; Koutsou, Giannis; Ottnad, Konstantin; Petschlies, Marcus

    2014-01-01

    The extraction of the magnetic form factor of the nucleon at zero momentum transfer is usually performed by adopting a parametrization for its momentum dependence and fitting the results obtained at finite momenta. We present position space methods that rely on taking the derivative of relevant correlators to extract directly the magnetic form factor at zero momentum without the need to assume a functional form for its momentum dependence. These methods are explored on one ensemble using $N_f=2+1+1$ Wilson twisted mass fermions.

  12. EXTRACT

    DEFF Research Database (Denmark)

    Pafilis, Evangelos; Buttigieg, Pier Luigi; Ferrell, Barbra

    2016-01-01

    The microbial and molecular ecology research communities have made substantial progress on developing standards for annotating samples with environment metadata. However, sample manual annotation is a highly labor intensive process and requires familiarity with the terminologies used. We have the...... and text-mining-assisted curation revealed that EXTRACT speeds up annotation by 15-25% and helps curators to detect terms that would otherwise have been missed.Database URL: https://extract.hcmr.gr/....

  13. Kernel Factor Analysis Algorithm with Varimax

    Institute of Scientific and Technical Information of China (English)

    Xia Guoen; Jin Weidong; Zhang Gexiang

    2006-01-01

    Kernal factor analysis (KFA) with varimax was proposed by using Mercer kernel function which can map the data in the original space to a high-dimensional feature space, and was compared with the kernel principle component analysis (KPCA). The results show that the best error rate in handwritten digit recognition by kernel factor analysis with varimax (4.2%) was superior to KPCA (4.4%). The KFA with varimax could more accurately image handwritten digit recognition.

  14. Analysis of effect factors-based stochastic network planning model

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Looking at all the indeterminate factors as a whole and regarding activity durations as independent random variables,the traditional stochastic network planning models ignore the inevitable relationship and dependence among activity durations when more than one activity is possibly affected by the same indeterminate factors.On this basis of analysis of indeterminate effect factors of durations,the effect factors-based stochastic network planning (EFBSNP) model is proposed,which emphasizes on the effects of not only logistic and organizational relationships,but also the dependent relationships,due to indeterminate factors among activity durations on the project period.By virtue of indeterminate factor analysis the model extracts and describes the quantitatively indeterminate effect factors,and then takes into account the indeterminate factors effect schedule by using the Monte Carlo simulation technique.The method is flexible enough to deal with effect factors and is coincident with practice.A software has been developed to simplify the model-based calculation,in VisualStudio.NET language.Finally,a case study is included to demonstrate the applicability of the proposed model and comparison is made with some advantages over the existing models.

  15. Effects of various factors of ultrasonic treatment on the extraction recovery of drugs from fish tissues.

    Science.gov (United States)

    Magiera, Sylwia; Pardylla, Anna; Baranowska, Irena

    2015-09-01

    In the present research, a combined extraction method of ultrasound-assisted extraction (UAE) in conjunction with solid phase extraction (SPE) was applied to isolation and enrichment of selected drugs (metoprolol, ticlopidine, propranolol, carbamazepine, naproxen, acenocumarol, diclofenac, ibuprofen) from fish tissues. The extracted analytes were separated and determined by ultra-high performance liquid chromatography with UV detection (UHPLC-UV) technique. The selectivity of the developed UHPLC-UV method was confirmed by comparison with ultra-high performance liquid chromatography-tandem mass spectrometry (UHPLC-MS/MS) analysis. The important parameters, such as composition of type and pH of extraction solvent, solid/liquid rate volume of extraction solvent and number of extraction cycles were studied. The ultrasonic parameters, such as time, power and temperature of the process were optimized by using a half-fraction factorial central composite design (CCD). The mixture of 10 mL of methanol and 7 mL of water (pH 2.2) (three times) was chosen for the extraction of selected drug from fish tissues. The results showed that the highest recoveries of analytes were obtained with an extraction temperature of 40°C, ultrasonic power of 300 W, extraction time of 30 min. Under the optimal conditions, the linearity of method was 0.12-5.00 μg/g. The determination coefficients (R(2)) were from 0.979 to 0.998. The limits of detection (LODs) and limits of quantification (LOQs) for the extracted compounds were 0.04-0.17 μg/g and 0.12-0.50 μg/g, respectively. The recoveries were between 85.5% and 115.8%.

  16. Microwave-assisted extraction versus Soxhlet extraction for the analysis of short-chain chlorinated alkanes in sediments.

    Science.gov (United States)

    Parera, J; Santos, F J; Galceran, M T

    2004-08-13

    Microwave-assisted extraction (MAE) was evaluated as a possible alternative to Soxhlet extraction for analysing short-chain chlorinated alkanes (commonly called short-chain chlorinated paraffins, SCCPs) in river sediment samples, using gas chromatography coupled to negative chemical ionisation mass spectrometry. For MAE optimisation, several extraction parameters such as solvent extraction mixture, extraction time and extraction temperature were studied. Maximum extraction efficiencies for SCCPs (90%) and for 12 polychlorinated biphenyl (PCB) congeners (91-95%) were achieved using 5 g of sediment sample, 30 ml of n-hexane-acetone (1:1, v/v) as solvent extraction, and 15 min and 115 degrees C of extraction time and temperature, respectively. Activated Florisil was used to clean-up the extracts, allowing highly selective separation of SCCPs from other organic contaminants such as PCBs. MAE was compared with a conventional extraction technique such as Soxhlet and good agreement in the results was obtained. Quality parameters of the optimised MAE method such as run-to-run (R.S.D. 7%) and day-to-day precision (R.S.D. 9%) were determined using spiked river sediment samples, with LODs of 1.5 ng g(-1). This method was successfully applied to the analysis of SCCPs in river sediment samples at concentrations below the ng g(-1) level. O 2004 Elsevier B.V. All rights reserved.

  17. Plant Phenolics: Extraction, Analysis and Their Antioxidant and Anticancer Properties

    Directory of Open Access Journals (Sweden)

    Jin Dai

    2010-10-01

    Full Text Available Phenolics are broadly distributed in the plant kingdom and are the most abundant secondary metabolites of plants. Plant polyphenols have drawn increasing attention due to their potent antioxidant properties and their marked effects in the prevention of various oxidative stress associated diseases such as cancer. In the last few years, the identification and development of phenolic compounds or extracts from different plants has become a major area of health- and medical-related research. This review provides an updated and comprehensive overview on phenolic extraction, purification, analysis and quantification as well as their antioxidant properties. Furthermore, the anticancer effects of phenolics in-vitro and in-vivo animal models are viewed, including recent human intervention studies. Finally, possible mechanisms of action involving antioxidant and pro-oxidant activity as well as interference with cellular functions are discussed.

  18. Multiple factor analysis by example using R

    CERN Document Server

    Pagès, Jérôme

    2014-01-01

    Multiple factor analysis (MFA) enables users to analyze tables of individuals and variables in which the variables are structured into quantitative, qualitative, or mixed groups. Written by the co-developer of this methodology, Multiple Factor Analysis by Example Using R brings together the theoretical and methodological aspects of MFA. It also includes examples of applications and details of how to implement MFA using an R package (FactoMineR).The first two chapters cover the basic factorial analysis methods of principal component analysis (PCA) and multiple correspondence analysis (MCA). The

  19. Factors influencing the extraction of pharmaceuticals from sewage sludge and soil: an experimental design approach.

    Science.gov (United States)

    Ferhi, Sabrina; Bourdat-Deschamps, Marjolaine; Daudin, Jean-Jacques; Houot, Sabine; Nélieu, Sylvie

    2016-09-01

    Pharmaceuticals can enter the environment when organic waste products are recycled on agricultural soils. The extraction of pharmaceuticals is a challenging step in their analysis. The very different extraction conditions proposed in the literature make the choice of the right method for multi-residue analysis difficult. This study aimed at evaluating, with experimental design methodology, the influence of the nature, pH and composition of the extraction medium on the extraction recovery of 14 pharmaceuticals, including 8 antibiotics, from soil and sewage sludge. Preliminary experimental designs showed that acetonitrile and citrate-phosphate buffer were the best extractants. Then, a response surface design demonstrated that many cross-product and squared terms had significant effects, explaining the shapes of the response surfaces. It also allowed optimising the pharmaceutical recoveries in soil and sludge. The optimal conditions were interpreted considering the ionisation states of the compounds, their solubility in the extraction medium and their interactions with the solid matrix. To perform the analysis, a compromise was made for each matrix. After a QuEChERS purification, the samples were analysed by online SPE-UHPLC-MS-MS. Both methods were simple and economical. They were validated with the accuracy profile methodology for soil and sludge and characterised for another type of soil, digested sludge and composted sludge. Trueness globally ranged between 80 and 120 % recovery, and inter- and intra-day precisions were globally below 20 % relative standard deviation. Various pharmaceuticals were present in environmental samples, with concentration levels ranging from a few micrograms per kilogramme up to thousands of micrograms per kilogramme. Graphical abstract Influence of the extraction medium on the extraction recovery of 14 pharmaceuticals. Influence of the ionisation state, the solubility and the interactions of pharmaceuticals with solid matrix. Analysis

  20. Optimized protein extraction methods for proteomic analysis of Rhizoctonia solani.

    Science.gov (United States)

    Lakshman, Dilip K; Natarajan, Savithiry S; Lakshman, Sukla; Garrett, Wesley M; Dhar, Arun K

    2008-01-01

    Rhizoctonia solani (Teleomorph: Thanatephorus cucumeris, T. praticola) is a basidiomycetous fungus and a major cause of root diseases of economically important plants. Various isolates of this fungus are also beneficially associated with orchids, may serve as biocontrol agents or remain as saprophytes with roles in decaying and recycling of soil organic matter. R. solani displays several hyphal anastomosis groups (AG) with distinct host and pathogenic specializations. Even though there are reports on the physiological and histological basis of Rhizoctonia-host interactions, very little is known about the molecular biology and control of gene expression early during infection by this pathogen. Proteamic technologies are powerful tools for examining alterations in protein profiles. To aid studies on its biology and host pathogen interactions, a two-dimensional (2-D) gel-based global proteomic study has been initiated. To develop an optimized protein extraction protocol for R. solani, we compared two previously reported protein extraction protocols for 2-D gel analysis of R. solani (AG-4) isolate Rs23. Both TCA-acetone precipitation and phosphate solubilization before TCA-acetone precipitation worked well for R. solani protein extraction, although selective enrichment of some proteins was noted with either method. About 450 spots could be detected with the densitiometric tracing of Coomassie blue-stained 2-D PAGE gels covering pH 4-7 and 6.5-205 kDa. Selected protein spots were subjected to mass spectrometric analysis with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). Eleven protein spots were positively identified based on peptide mass fingerprinting match with fungal proteins in public databases with the Mascot search engine. These results testify to the suitability of the two optimized protein extraction protocols for 2-D proteomic studies of R. solani.

  1. Phytochemical analysis and antioxidant activities of Trigona Apicalis propolis extract

    Science.gov (United States)

    Rosli, Nur Liyana; Roslan, Husniyati; Omar, Eshaifol Azam; Mokhtar, Norehan; Hapit, Nor Hussaini Abdul; Asem, Nornaimah

    2016-12-01

    Propolis is a resinous substance found in beehives. It provides beneficial effects on human health and has been used to treat many diseases since ancient times. The objectives of this study were to analyze the phytochemical profile of propolis derived from local T. apicalis species and its antioxidant activities. The ethanolic extract of propolis was subjected to HPLC analysis to analyze its phytochemical profile. The propolis extract was later tested for antioxidant capacities by using DPPH radical scavenging assay. TPC and TFC were performed to determine the correlation with its antioxidant activities. TEAC for each serial dilution sample was 2621.15 (4.76 mg/mL), 2050.85 (2.38 mg/mL), 1883.27 (1.19 mg/mL), 1562.67 (0.59 mg/mL), 1327.82 (0.29 mg/mL), 1164.49 (0.15 mg/mL), 983.27 (0.07 mg/mL), and 944.79 (0.04 mg/mL). The results demonstrated that the antioxidant activities of propolis extract were dose dependent. The IC50 of propolis for DPPH assay was 4.27 mg/ml. Correlation values of TPC and TFC against DPPH indicate that the antioxidant activities of propolis extract used in this study could be mainly influenced by the phenolic and flavonoid contents. These findings highlighted the importance of quality analysis in order to ensure the consistency of biological effects or therapy of a natural product, such as propolis.

  2. Extraction and Quantitative HPLC Analysis of Coumarin in Hydroalcoholic Extracts of Mikania glomerata Spreng: ("guaco" Leaves

    Directory of Open Access Journals (Sweden)

    Celeghini Renata M. S.

    2001-01-01

    Full Text Available Methods for preparation of hydroalcoholic extracts of "guaco" (Mikania glomerata Spreng. leaves were compared: maceration, maceration under sonication, infusion and supercritical fluid extraction. Evaluation of these methods showed that maceration under sonication had the best results, when considering the ratio extraction yield/extraction time. A high performance liquid chromatography (HPLC procedure for the determination of coumarin in these hydroalcoholic extracts of "guaco" leaves is described. The HPLC method is shown to be sensitive and reproducible.

  3. Entropy Analysis as an Electroencephalogram Feature Extraction Method

    Directory of Open Access Journals (Sweden)

    P. I. Sotnikov

    2014-01-01

    Full Text Available The aim of this study was to evaluate a possibility for using an entropy analysis as an electroencephalogram (EEG feature extraction method in brain-computer interfaces (BCI. The first section of the article describes the proposed algorithm based on the characteristic features calculation using the Shannon entropy analysis. The second section discusses issues of the classifier development for the EEG records. We use a support vector machine (SVM as a classifier. The third section describes the test data. Further, we estimate an efficiency of the considered feature extraction method to compare it with a number of other methods. These methods include: evaluation of signal variance; estimation of spectral power density (PSD; estimation of autoregression model parameters; signal analysis using the continuous wavelet transform; construction of common spatial pattern (CSP filter. As a measure of efficiency we use the probability value of correctly recognized types of imagery movements. At the last stage we evaluate the impact of EEG signal preprocessing methods on the final classification accuracy. Finally, it concludes that the entropy analysis has good prospects in BCI applications.

  4. Extraction of rice bran extract and some factors affecting its inhibition of polyphenol oxidase activity and browning in potato.

    Science.gov (United States)

    Boonsiripiphat, Kunnikar; Theerakulkait, Chockchai

    2009-01-01

    The extraction conditions of rice bran extract (RBE), including extraction ratio, extraction time, and extraction temperature, were studied in relation to enzymatic browning inhibition in potato. The inhibitory effect of RBE on potato polyphenol oxidase (PPO) activity and its total phenolic compound content were highest at an extraction ratio of 1:3 (rice bran:water, w/v), extraction time of 30 min, and extraction temperature of 40 degrees C. RBE showed the most inhibitory effect on PPO activity at pH 6.5. However, the inhibitory effect of RBE on potato PPO activity and its total phenolic compound content were decreased at the higher temperature and longer time.

  5. An Analysis Method for Superconducting Resonator Parameter Extraction with Complex Baseline Removal

    Science.gov (United States)

    Cataldo, Giuseppe

    2014-01-01

    A new semi-empirical model is proposed for extracting the quality (Q) factors of arrays of superconducting microwave kinetic inductance detectors (MKIDs). The determination of the total internal and coupling Q factors enables the computation of the loss in the superconducting transmission lines. The method used allows the simultaneous analysis of multiple interacting discrete resonators with the presence of a complex spectral baseline arising from reflections in the system. The baseline removal allows an unbiased estimate of the device response as measured in a cryogenic instrumentation setting.

  6. Independent component analysis for automatic note extraction from musical trills

    Science.gov (United States)

    Brown, Judith C.; Smaragdis, Paris

    2004-05-01

    The method of principal component analysis, which is based on second-order statistics (or linear independence), has long been used for redundancy reduction of audio data. The more recent technique of independent component analysis, enforcing much stricter statistical criteria based on higher-order statistical independence, is introduced and shown to be far superior in separating independent musical sources. This theory has been applied to piano trills and a database of trill rates was assembled from experiments with a computer-driven piano, recordings of a professional pianist, and commercially available compact disks. The method of independent component analysis has thus been shown to be an outstanding, effective means of automatically extracting interesting musical information from a sea of redundant data.

  7. Competition between recombination and extraction of free charges determines the fill factor of organic solar cells

    NARCIS (Netherlands)

    Bartesaghi, Davide; Perez, Irene del Carmen; Kniepert, Juliane; Roland, Steffen; Turbiez, Mathieu; Neher, Dieter; Koster, L. Jan Anton

    Among the parameters that characterize a solar cell and define its power-conversion efficiency, the fill factor is the least well understood, making targeted improvements difficult. Here we quantify the competition between charge extraction and recombination by using a single parameter theta, and we

  8. Comparative analysis of essential oil composition of Iranian and Indian Nigella sativa L. extracted using supercritical fluid extraction and solvent extraction.

    Science.gov (United States)

    Ghahramanloo, Kourosh Hasanzadeh; Kamalidehghan, Behnam; Akbari Javar, Hamid; Teguh Widodo, Riyanto; Majidzadeh, Keivan; Noordin, Mohamed Ibrahim

    2017-01-01

    The objective of this study was to compare the oil extraction yield and essential oil composition of Indian and Iranian Nigella sativa L. extracted by using Supercritical Fluid Extraction (SFE) and solvent extraction methods. In this study, a gas chromatography equipped with a mass spectrophotometer detector was employed for qualitative analysis of the essential oil composition of Indian and Iranian N. sativa L. The results indicated that the main fatty acid composition identified in the essential oils extracted by using SFE and solvent extraction were linoleic acid (22.4%-61.85%) and oleic acid (1.64%-18.97%). Thymoquinone (0.72%-21.03%) was found to be the major volatile compound in the extracted N. sativa oil. It was observed that the oil extraction efficiency obtained from SFE was significantly (Pextraction technique. The present study showed that SFE can be used as a more efficient technique for extraction of N. Sativa L. essential oil, which is composed of higher linoleic acid and thymoquinone contents compared to the essential oil obtained by the solvent extraction technique.

  9. Stability analysis of underground openings for extraction of natural stone

    Directory of Open Access Journals (Sweden)

    Karmen Fifer Bizjak

    2003-06-01

    Full Text Available Extraction of natural stone is usually carried out in surface quarries. Underground excavation is not a frequently used method. Due to the restrictive environmental legislature and limited stores of natural stone, underground extraction has become quite an interestingalternative. Dimensions of underground openings are determined with stability analyses.Prior to starting a numerical analysis of a large underground opening it is very important to determine the mechanism of failure and set up a proper numerical model. The continuum method is usually used in rock mechanics. A disadvantage of this calculation is that it cannotbe applied to a large number of joints. Other methods are preferred, such as the numerical discrete method, which allows joint systems to be involved into calculations. The most probable failure of rock with several joint systems is block sliding. In the example of themarble of Hotavlje both methods were used. It was established that the continuum method is convenient for the global stability prediction of the underground opening. Further discretemethod enable the block stability calculation. The analytical block analysis is still accurate for the a stability calculation of single block. The prerequisite for a good numerical analysis is sufficient quality data on geomechanical properties of rock. In-situ tests, laboratory tests and geotechnical measurements on the site are therefore necessary. Optimum dimensions of underground chambers in the Quarry of Hotavlje were calculated by using several numericalmodels, and the maximum chamber width of 12 m was obtained.

  10. Analysis of transfer reactions: determination of spectroscopic factors

    Energy Technology Data Exchange (ETDEWEB)

    Keeley, N. [CEA Saclay, Dept. d' Astrophysique, de Physique des Particules de Physique Nucleaire et de l' Instrumentation Associee (DSM/DAPNIA/SPhN), 91- Gif sur Yvette (France); The Andrzej So an Institute for Nuclear Studies, Dept. of Nuclear Reactions, Warsaw (Poland)

    2007-07-01

    An overview of the most popular models used for the analysis of direct reaction data is given, concentrating on practical aspects. The 4 following models (in order of increasing sophistication): the distorted wave born approximation (DWBA), the adiabatic model, the coupled channels born approximation, and the coupled reaction channels are briefly described. As a concrete example, the C{sup 12}(d,p)C{sup 13} reaction at an incident deuteron energy of 30 MeV is analysed with progressively more physically sophisticated models. The effect of the choice of the reaction model on the spectroscopic information extracted from the data is investigated and other sources of uncertainty in the derived spectroscopic factors are discussed. We have showed that the choice of the reaction model can significantly influence the nuclear structure information, particularly the spectroscopic factors or amplitudes but occasionally also the spin-parity, that we wish to extract from direct reaction data. We have also demonstrated that the DWBA can fail to give a satisfactory description of transfer data but when the tenets of the theory are fulfilled DWBA can work very well and will yield the same results as most sophisticated models. The use of global rather than fitted optical potentials can also lead to important differences in the extracted spectroscopic factors.

  11. Factors influencing ridge alterations following immediate implant placement into extraction sockets.

    Science.gov (United States)

    Ferrus, Jorge; Cecchinato, Denis; Pjetursson, E Bjarni; Lang, Niklaus P; Sanz, Mariano; Lindhe, Jan

    2010-01-01

    To identify factors that may influence ridge alterations occurring at the buccal aspect of the extraction site following immediate implant placement. In 93 subjects, single-tooth implants were placed immediately into extraction sockets in the maxilla (tooth locations 15-25). A series of measurements describing the extraction site were made immediately after implant installation and at re-entry, 16 weeks later. The implant sites were stratified according to four factors: (i) implant location (anterior/posterior), (ii) cause of tooth extraction (periodontitis/non-periodontitis), (iii) thickness of the buccal bone walls ( 1 mm) and (iv) the dimension of the horizontal buccal gap ( 1 mm). (i) The location where the implant was placed (anterior/posterior) as well as (ii) the thickness of the buccal bone crest and (iii) the size of the horizontal buccal gap significantly influenced the amount of hard tissue alteration that occurred during a 4-month period of healing. At implant sites in the premolar segment, the fill of the horizontal gap was more pronounced than in the incisor-canine segment, while the vertical crest reduction was significantly smaller. Furthermore, at sites where the buccal bone wall was thick (>1 mm) and where the horizontal gap was large (>1 mm), the degree of gap fill was substantial. The thickness of the buccal bone wall as well as the dimension of the horizontal gap influenced the hard tissue alterations that occur following immediate implant placement into extraction sockets.

  12. Extraction Factor Of Tungsten Sources From Tungsten Scraps By Zinc Decomposition Process

    Directory of Open Access Journals (Sweden)

    Pee J.-H.

    2015-06-01

    Full Text Available Decomposition promoting factors and extraction process of tungsten carbide and tungstic acid powders in the zinc decomposition process of tungsten scraps which are composed mostly of tungsten carbide and cobalt were evaluated. Zinc volatility was suppressed by the enclosed graphite crucible and zinc volatilization pressure was produced in the reaction graphite crucible inside an electric furnace for ZDP (Zinc Decomposition Process. Decomposition reaction was done for 2hours at 650°, which 100% decomposed the tungsten scraps that were over 30 mm thick. Decomposed scraps were pulverized under 75μm and were composed of tungsten carbide and cobalt identified by the XRD (X-ray Diffraction. To produce the WC(Tungsten Carbide powder directly from decomposed scraps, pulverized powders were reacted with hydrochloric acid to remove the cobalt binder. Also to produce the tungstic acid, pulverized powders were reacted with aqua regia to remove the cobalt binder and oxidize the tungsten carbide. Tungsten carbide and tungstic acid powders were identified by XRD and chemical composition analysis.

  13. Excited state systematics in extracting nucleon electromagnetic form factors from the lattice

    Energy Technology Data Exchange (ETDEWEB)

    Rae, Thomas; Hippel, Georg von; Knippschild, Bastian [PRISMA Cluster of Excellence and Institut fuer Kernphysik, University of Mainz (Germany); Capitani, Stefano; Wittig, Hartmut; Jaeger, Benjamin; Meyer, Harvey; Della Morte, Michele [PRISMA Cluster of Excellence and Institut fuer Kernphysik, University of Mainz (Germany); Helmholtz Institute Mainz, University of Mainz (Germany)

    2013-07-01

    We present recent results for the nucleon electromagnetic form factors using lattice QCD. This includes the determination of the charge radii. The standard approach is to extract the form factors via a plateau fit to the lattice data using a 'large-enough' time separation between the operators at the source and sink. To check that this removes excited state contaminations to an acceptable level, we employ two further extraction methods: a fit that explicitly accounts for the contamination; and the use of a summed operator insertion, which suppresses the contamination. A comparison of the methods allows for the study of systematic effects related to excited state contributions entering in the q{sup 2} dependence of the form factors. We employ the CLS ensembles using non-perturbatively O(a) improved Wilson fermions in N{sub f}=2 QCD.

  14. Data Clustering Analysis Based on Wavelet Feature Extraction

    Institute of Scientific and Technical Information of China (English)

    QIANYuntao; TANGYuanyan

    2003-01-01

    A novel wavelet-based data clustering method is presented in this paper, which includes wavelet feature extraction and cluster growing algorithm. Wavelet transform can provide rich and diversified information for representing the global and local inherent structures of dataset. therefore, it is a very powerful tool for clustering feature extraction. As an unsupervised classification, the target of clustering analysis is dependent on the specific clustering criteria. Several criteria that should be con-sidered for general-purpose clustering algorithm are pro-posed. And the cluster growing algorithm is also con-structed to connect clustering criteria with wavelet fea-tures. Compared with other popular clustering methods,our clustering approach provides multi-resolution cluster-ing results,needs few prior parameters, correctly deals with irregularly shaped clusters, and is insensitive to noises and outliers. As this wavelet-based clustering method isaimed at solving two-dimensional data clustering prob-lem, for high-dimensional datasets, self-organizing mapand U-matrlx method are applied to transform them intotwo-dimensional Euclidean space, so that high-dimensional data clustering analysis,Results on some sim-ulated data and standard test data are reported to illus-trate the power of our method.

  15. Factors Controlling Redox Speciation of Plutonium and Neptunium in Extraction Separation Processes

    Energy Technology Data Exchange (ETDEWEB)

    Paulenova, Alena [Principal Investigator; Vandegrift, III, George F. [Collaborator

    2013-09-24

    The objective of the project was to examine the factors controlling redox speciation of plutonium and neptunium in UREX+ extraction in terms of redox potentials, redox mechanism, kinetics and thermodynamics. Researchers employed redox-speciation extractions schemes in parallel to the spectroscopic experiments. The resulting distribution of redox species w studied uring spectroscopic, electrochemical, and spectro-electrochemical methods. This work reulted in collection of data on redox stability and distribution of redox couples in the nitric acid/nitrate electrolyte and the development of redox buffers to stabilize the desired oxidation state of separated radionuclides. The effects of temperature and concentrations on the redox behavior of neptunium were evaluated.

  16. Extraction, chromatographic and mass spectrometric methods for lipid analysis.

    Science.gov (United States)

    Pati, Sumitra; Nie, Ben; Arnold, Robert D; Cummings, Brian S

    2016-05-01

    Lipids make up a diverse subset of biomolecules that are responsible for mediating a variety of structural and functional properties as well as modulating cellular functions such as trafficking, regulation of membrane proteins and subcellular compartmentalization. In particular, phospholipids are the main constituents of biological membranes and play major roles in cellular processes like transmembrane signaling and structural dynamics. The chemical and structural variety of lipids makes analysis using a single experimental approach quite challenging. Research in the field relies on the use of multiple techniques to detect and quantify components of cellular lipidomes as well as determine structural features and cellular organization. Understanding these features can allow researchers to elucidate the biochemical mechanisms by which lipid-lipid and/or lipid-protein interactions take place within the conditions of study. Herein, we provide an overview of essential methods for the examination of lipids, including extraction methods, chromatographic techniques and approaches for mass spectrometric analysis.

  17. Kernel parameter dependence in spatial factor analysis

    DEFF Research Database (Denmark)

    Nielsen, Allan Aasbjerg

    2010-01-01

    feature space via the kernel function and then performing a linear analysis in that space. In this paper we shall apply a kernel version of maximum autocorrelation factor (MAF) [7, 8] analysis to irregularly sampled stream sediment geochemistry data from South Greenland and illustrate the dependence...

  18. Multistructure Statistical Model Applied To Factor Analysis

    Science.gov (United States)

    Bentler, Peter M.

    1976-01-01

    A general statistical model for the multivariate analysis of mean and covariance structures is described. Matrix calculus is used to develop the statistical aspects of one new special case in detail. This special case separates the confounding of principal components and factor analysis. (DEP)

  19. A comparison study on detection of key geochemical variables and factors through three different types of factor analysis

    Science.gov (United States)

    Hoseinzade, Zohre; Mokhtari, Ahmad Reza

    2017-10-01

    Large numbers of variables have been measured to explain different phenomena. Factor analysis has widely been used in order to reduce the dimension of datasets. Additionally, the technique has been employed to highlight underlying factors hidden in a complex system. As geochemical studies benefit from multivariate assays, application of this method is widespread in geochemistry. However, the conventional protocols in implementing factor analysis have some drawbacks in spite of their advantages. In the present study, a geochemical dataset including 804 soil samples collected from a mining area in central Iran in order to search for MVT type Pb-Zn deposits was considered to outline geochemical analysis through various fractal methods. Routine factor analysis, sequential factor analysis, and staged factor analysis were applied to the dataset after opening the data with (additive logratio) alr-transformation to extract mineralization factor in the dataset. A comparison between these methods indicated that sequential factor analysis has more clearly revealed MVT paragenesis elements in surface samples with nearly 50% variation in F1. In addition, staged factor analysis has given acceptable results while it is easy to practice. It could detect mineralization related elements while larger factor loadings are given to these elements resulting in better pronunciation of mineralization.

  20. Proximity graph analysis for linear networks extraction from high-resolution satellite imagery

    Science.gov (United States)

    Skourikhine, Alexei N.

    2006-05-01

    Reliable and accurate methods for detection and extraction of linear network, such as road networks, in satellite imagery are essential to many applications. We present an approach to the road network extraction from high-resolution satellite imagery that is based on proximity graph analysis. We are jumping off from the classification provided by existing spectral and textural classification tools, which produce a set of candidate road patches. Then, constrained Delaunay triangulation and Chordal Axis transform are used to extract centerline characterization of the delineated candidate road patches. We refine produced center lines to reduce noise influence on patch boundaries, resulting in a smaller set of robust center lines authentically representing their road patches. Refined center lines are triangulated using constrained Delaunay triangulation (CDT) algorithm to generate a sub-optimal mesh of interconnections among them. The generated triangle edges connecting different center lines are used for spatial analysis of the center lines relations. A subset of the Delaunay tessellation grid contains the Euclidian Minimum Spanning Tree (EMST) that provides an approximation of road network. The approach can be generalized to the multi-criteria MST and multi-criteria shortest path algorithms to integrate other factors important for road network extraction, in addition to proximity relations considered by standard EMST.

  1. Quantitative spatial analysis of the mouse brain lipidome by pressurized liquid extraction surface analysis

    DEFF Research Database (Denmark)

    Almeida, Reinaldo; Berzina, Zane; Christensen, Eva Arnspang

    2015-01-01

    of internal lipid standards in the extraction solvent. The analysis of lipid microextracts by nanoelectrospray ionization provides long-lasting ion spray which in conjunction with a hybrid ion trap-orbitrap mass spectrometer enables identification and quantification of molecular lipid species using a method......Here we describe a novel surface sampling technique termed pressurized liquid extraction surface analysis (PLESA), which in combination with a dedicated high-resolution shotgun lipidomics routine enables both quantification and in-depth structural characterization of molecular lipid species...... with successive polarity shifting, high-resolution Fourier transform mass spectrometry (FTMS), and fragmentation analysis. We benchmarked the performance of the PLESA approach for in-depth lipidome analysis by comparing it to conventional lipid extraction of excised tissue homogenates and by mapping the spatial...

  2. Bone dimensional variations at implants placed in fresh extraction sockets: a multilevel multivariate analysis.

    Science.gov (United States)

    Tomasi, Cristiano; Sanz, Mariano; Cecchinato, Denis; Pjetursson, Bjarni; Ferrus, Jorge; Lang, Niklaus P; Lindhe, Jan

    2010-01-01

    To use multilevel, multivariate models to analyze factors that may affect bone alterations during healing after an implant immediately placed into an extraction socket. Data included in the current analysis were obtained from a clinical trial in which a series of measurements were performed to characterize the extraction site immediately after implant installation and at re-entry 4 months later. A regression multilevel, multivariate model was built to analyze factors affecting the following variables: (i) the distance between the implant surface and the outer bony crest (S-OC), (ii) the horizontal residual gap (S-IC), (iii) the vertical residual gap (R-D) and (iv) the vertical position of the bone crest opposite the implant (R-C). It was demonstrated that (i) the S-OC change was significantly affected by the thickness of the bone crest; (ii) the size of the residual gap was dependent of the size of the initial gap and the thickness of the bone crest; and (iii) the reduction of the buccal vertical gap was dependent on the age of the subject. Moreover, the position of the implant opposite the alveolar crest of the buccal ridge and its bucco-lingual implant position influenced the amount of buccal crest resorption. Clinicians must consider the thickness of the buccal bony wall in the extraction site and the vertical as well as the horizontal positioning of the implant in the socket, because these factors will influence hard tissue changes during healing.

  3. Exploratory factor analysis of the Brazilian OHIP for edentulous subjects.

    Science.gov (United States)

    Souza, R F; Leles, C R; Guyatt, G H; Pontes, C B; Della Vecchia, M P; Neves, F D

    2010-03-01

    The use of seven domains for the Oral Health Impact Profile (OHIP)-EDENT was not supported for its Brazilian version, making data interpretation in clinical settings difficult. Thus, the aim of this study was to assess patients' responses for the translated OHIP-EDENT in a group of edentulous subjects and to develop factor scales for application in future studies. Data from 103 conventional and implant-retained complete denture wearers (36 men, mean age of 69.1 +/- 10.3 years) were assessed using the Brazilian version of the OHIP-EDENT. Oral health-related quality of life domains were identified by factor analysis using principal component analysis as the extraction method, followed by varimax rotation. Factor analysis identified four factors that accounted for 63% of the 19 items total variance, named masticatory discomfort and disability (four items), psychological discomfort and disability (five items), social disability (five items) and oral pain and discomfort (five items). Four factors/domains of the Brazilian OHIP-EDENT version represent patient-important aspects of oral health-related quality of life.

  4. Efficiency of EGFR mutation analysis for small microdissected cytological specimens using multitech DNA extraction solution.

    Science.gov (United States)

    Oh, Seo Young; Lee, Hoon Taek

    2015-07-01

    The microdissection method has greatly facilitated the isolation of pure cell populations for accurate analysis of mutations. However, the absence of coverslips in these preparations leads to poor resolution of cellular morphological features. In the current study, the authors developed the MultiTech DNA extraction solution to improve the visualization of cell morphology for microdissection and tested it for the preservation of morphological properties of cells, quality of DNA, and ability to detect mutations. A total of 121 cytological samples, including fine-needle aspirates, sputum, pleural fluid, and bronchial washings, were selected from hospital archives. DNA extracted from microdissected cells was evaluated by epidermal growth factor receptor (EGFR) mutation analysis using pyrosequencing, Sanger sequencing, and peptide nucleic acid (PNA)-mediated real-time polymerase chain reaction clamping. Morphological features of cells as well as DNA quality and quantity were analyzed in several cytological samples to assess the performance of the MultiTech DNA extraction solution. The results were compared with previous EGFR mutation tests. The MultiTech DNA extraction solution improved the morphology of archived stained cells before microdissection and provided a higher DNA yield than the commercial QIAamp DNA Mini Kit in samples containing a minimal number of cells (25-50 cells). The authors were able to detect identical EGFR mutations by using different analysis platforms and consistently identified these mutations in samples comprising as few as 25 microdissected cells. The MultiTech DNA extraction solution is a reliable medium that improves the resolution of cell morphology during microdissection. It was particularly useful in EGFR mutations of samples containing a small number of cells. © 2015 American Cancer Society.

  5. Effect of red wine and red grape extract on blood lipids, haemostatic factors, and other risk factors for cardiovascular disease

    DEFF Research Database (Denmark)

    Hansen, Alice Schmidt; Marckmann, P.; Dragsted, L.O.

    2005-01-01

    . Plasma high-density lipoprotein (HDL)- cholesterol (HDL-C), low-density lipoprotein (LDL)-cholesterol (LDL-C), HDL-C/LDL-C-ratio, very-low-density lipoprotein ( VLDL)- triacylglycerol, total cholesterol, fibrinogen, factor VII coagulant activity (FVIIc), blood pressure, and body weight were determined......: 300 ml/day, 38.3 g alcohol/day, female subjects: 200 ml/ day, 25.5 g alcohol/day), 2: water+red grape extract tablets ( wine-equivalent dose), 3: water+red grape extract tablets ( half dose), or 4: water+placebo tablets for a period of 4 weeks. No other sources of alcohol or anthocyanin were allowed...... before and after intervention. Results: Wine consumption was associated with a significant 11 - 16% increase in fasting HDL-C and 8 - 15% decrease in fasting fibrinogen relative to not drinking wine. There were no significant treatment effects on fasting LDL-C, HDL-C/LDL-C-ratio, VLDL...

  6. Optimization of a new extraction technique for analysis of verbenone and cis-verbenol in pine seeds

    OpenAIRE

    Liazid, Ali; Fernández Barbero, Gerardo; Palma Lovillo, Miguel; García Barroso, Carmelo

    2007-01-01

    Results from a systematic study of the factors affecting extraction of cis-verbenol and verbenone from pine seeds are presented. Five extraction conditions were investigated: extraction solvent, method of extraction, extraction temperature, volume of solvent, and the ratio of the mass of sample to the amount of extraction solvent.

  7. Exploring leadership styles for innovation: an exploratory factor analysis

    Directory of Open Access Journals (Sweden)

    Wipulanusat Warit

    2017-03-01

    Full Text Available Leadership plays a vital role in building the process, structures, and climate for an organisation to become innovative and to motivate team expectations toward innovations. This study explores the leadership styles that engineers regard as significant for innovation in the public sector. Exploratory factor analysis (EFA was conducted to identify the principal leadership styles influencing innovation in the Australian Public Service (APS, using survey data extracted from the 2014 APS employee census comprising 3 125 engineering professionals in Commonwealth of Australia departments. EFA returned a two-factor structure explaining 77.6% of the variance of the leadership for innovation construct. In this study, the results from the EFA provided a clear estimation of the factor structure of the measures for leadership for innovation. From the results, the two factors extracted were transformational leadership and consideration leadership. In transformational leadership, a leader values organisational objectives, inspires subordinates to perform, and motivates followers beyond expected levels of work standards. Consideration leadership refers to the degree to which a leader shows concern and expressions of support for subordinates, takes care of their welfare, treats members as equals, and displays warmth and approachability. These findings highlight the role of leadership as the most critical predictor when considering the degree to which subordinates strive for creativity and innovation. Both transformational and consideration leadership styles are recommended to be incorporated into management training and development programs. This study also recommends that Commonwealth departments recruit supervisors who have both of these leadership styles before implementing innovative projects.

  8. IMPACTS, PATTERNS, INFLUENCING FACTORS AND POLICIES OF FUELWOOD EXTRACTION IN WAY KAMBAS NATIONAL PARK, INDONESIA

    Directory of Open Access Journals (Sweden)

    Ari Rakatama

    2016-04-01

    Full Text Available Uncontrolled fuelwood extraction from conservation forest of Way Kambas National Park (WKNP could threaten the existing forest. This paper studies the way to tackle the forest degradation in WKNP, with less negative impacts to the local people. Study was conducted by analysing existing data and maps of WKNP in terms of forest degradation, forest inventories, current policies, survey on how fuelwood is extracted, observation on fuelwood gatherers, fuelwood demand, and identification of further policy options. Results show that the most significant factors influencing the fuelwood extraction activity in WKNP are land ownership, followed by the distance to forest area, income level, the number of household members and age of household head. In the field, the fuelwood utilization is allowed by WKNP Authority, although it is formally forbidden.It was stated that fuelwood extraction in the area should be less than 2.89 ton/ha/year to maintain its sustainability, based on the mean WNKP forest tree annual increment. The fact shows that fuelwood extraction in WKNP reduces of forest biomass stock (1.06 tons/ha/year and decreases species diversity index (from 3.05 to 2.45, species evenness index (from 1.06 to 0.91 and old-young tree ratio (from 1.29 to 1. Ecosystem quality reduction is mainly caused by destructive techniques in extracting fuelwood such as slashing, scratching cambium, and cutting trees. Therefore, recommended policy includes legalizing fuelwood extraction with restrictions, providing alternative fuelwood and other biomass energy resources outside WKNP, conducting preventive (establishing checkpoints and increasing patrols and pre-emptive (educating and campaigning efforts, collaborating with other stakeholders, and empowering local economy.

  9. Cyanex 923 as the extractant in a rare earth element impurity analysis of high-purity cerium oxide.

    Science.gov (United States)

    Duan, Taicheng; Li, Hongfei; Kang, JianZhen; Chen, Hangting

    2004-06-01

    In this work, the feasibility of employing Cyanex 923 as an extractant into the non-cerium REE (rare earth elements) impurity analysis of high-purity cerium oxide was investigated. Through investigations on the choice of the extraction medium, the optimium extraction acidity, matrix Ce4+ effect on the non-cerium REE ion extraction, the optimium extractant concentration and suitable extracting time, and oscillation strengh, it was found that when the phase ratio was at 1:1 and the acicidity was about 2% H2SO4, by gently shaking by hand for about 2 min, 10 mL of 30% Cyanex 923 could not extract even for a 20 ng amount of non-cerium REE3+ ions. However, the extraction efficiency for Ce4+ of 100 mg total amount under the same conditions was about 96%, indicating that a 25-fold preconcentration factor could be achieved. Thus, it was concluded that Cyanex 923 could be used in a REE impurity analysis of 99.9999% or so pure cerium oxide for primary sepapation to elimilate matrix-induced interferences encountered in an ICP-MS (inductively coupled plasma mass spectroscopy) determination.

  10. Effect of Date Extract on Growth of Mutans Streptococci, the Most Important Factor of Dental Caries

    Directory of Open Access Journals (Sweden)

    A Sayyedi

    2007-01-01

    Full Text Available ABSTRACT: Introduction & Objective:Dental caries is perhaps the most common bacterial infections in humans and Streptococcus Mutans is one of the most important factors in dental caries. Research has shown that some kind foods have an inhibitory effect on cariogenic factors of Mutans streptococci. The aim of this study was to investigate the effect of date extract on growth of Streptococcus Mutans. Methods & Materials: This experimental study was down at faculty of medicine, Yasuj university of medical sciences with collaborative of microbiology department of Shiraz university of medical sciences in 2005. In an In-vitro study, effect of date extract on growth of Mutans Streptococci was surveyed .After collecting of Streptococcus Mutans from dental caries those were cultured in different medium of date fruit, extract of date fruit and syrup of date with different concentrations. Results: Following 24 hours, Streptococcus mutans was grown in less concentration of date mediums and its grown was inhibited in more concentrations. Conclusion: With respect of inhibitory effect of date extract on growth of Streptococcus mutans,it might be introduced that date as a source of food has a preventive effect on dental caries.

  11. Quantity and unit extraction for scientific and technical intelligence analysis

    Science.gov (United States)

    David, Peter; Hawes, Timothy

    2017-05-01

    Scientific and Technical (S and T) intelligence analysts consume huge amounts of data to understand how scientific progress and engineering efforts affect current and future military capabilities. One of the most important types of information S and T analysts exploit is the quantities discussed in their source material. Frequencies, ranges, size, weight, power, and numerous other properties and measurements describing the performance characteristics of systems and the engineering constraints that define them must be culled from source documents before quantified analysis can begin. Automating the process of finding and extracting the relevant quantities from a wide range of S and T documents is difficult because information about quantities and their units is often contained in unstructured text with ad hoc conventions used to convey their meaning. Currently, even simple tasks, such as searching for documents discussing RF frequencies in a band of interest, is a labor intensive and error prone process. This research addresses the challenges facing development of a document processing capability that extracts quantities and units from S and T data, and how Natural Language Processing algorithms can be used to overcome these challenges.

  12. Object-based Analysis for Extraction of Dominant Tree Species

    Institute of Scientific and Technical Information of China (English)

    Meiyun; SHAO; Xia; JING; Lu; WANG

    2015-01-01

    As forest is of great significance for our whole development and the sustainable plan is so focus on it. It is very urgent for us to have the whole distribution,stock volume and other related information about that. So the forest inventory program is on our schedule. Aiming at dealing with the problem in extraction of dominant tree species,we tested the highly hot method-object-based analysis. Based on the ALOS image data,we combined multi-resolution in e Cognition software and fuzzy classification algorithm. Through analyzing the segmentation results,we basically extract the spruce,the pine,the birch and the oak of the study area. Both the spectral and spatial characteristics were derived from those objects,and with the help of GLCM,we got the differences of each species. We use confusion matrix to do the Classification accuracy assessment compared with the actual ground data and this method showed a comparatively good precision as 87% with the kappa coefficient 0. 837.

  13. Determining the best extractant and extraction conditions for fulvic acid through qualitative and quantitative analysis of vermicompost

    Directory of Open Access Journals (Sweden)

    Omid Shabnani Moghadam

    2015-06-01

    Full Text Available Fulvic acid is a natural tampon and an appropriate chelating agent that has high ion-exchange ability and increasing absorption of minerals in plants. This paper examined the effects of extractants (sodium hydroxide, sodium polyphosphate, urea and EDTA and the extraction time (1, 7 and 9 days on the physicochemical properties of vermicompost-produced fulvic acid. Finally, various methods were compared to the universal method of humic substances. Different qualitative and quantitative analysis such as detecting the functional groups (FTIR, measurement of functional groups, spectrophotometric ratios and humification indices were carried out on fulvic acid. Results showed that the highest and lowest amounts of fulvic acid were extracted by the sodium hydroxide and urea, respectively. Various extractants made negligible changes in the type and quality of the Fulvic acid functional groups. Results indicated that sodium hydroxide was the best extractant and the minimum amounts of fulvic acid were extracted by the urea. Urea-extracted fulvic acid had the most functional groups of total acidity and phenolic OH. The most carboxyl functional groups and spectrophotometric ratios were detected in EDTA solution. At the end, by the comparison of various methods, universal method despite the low extraction amount had more functional groups and higher efficiencies compare to others.

  14. Analysis of Economic Factors Affecting Stock Market

    OpenAIRE

    Xie, Linyin

    2010-01-01

    This dissertation concentrates on analysis of economic factors affecting Chinese stock market through examining relationship between stock market index and economic factors. Six economic variables are examined: industrial production, money supply 1, money supply 2, exchange rate, long-term government bond yield and real estate total value. Stock market comprises fixed interest stocks and equities shares. In this dissertation, stock market is restricted to equity market. The stock price in thi...

  15. Gas purge microsyringe extraction for quantitative direct gas chromatographic-mass spectrometric analysis of volatile and semivolatile chemicals.

    Science.gov (United States)

    Yang, Cui; Piao, Xiangfan; Qiu, Jinxue; Wang, Xiaoping; Ren, Chunyan; Li, Donghao

    2011-03-25

    Sample pretreatment before chromatographic analysis is the most time consuming and error prone part of analytical procedures, yet it is a key factor in the final success of the analysis. A quantitative and fast liquid phase microextraction technique termed as gas purge microsyringe extraction (GP-MSE) has been developed for simultaneous direct gas chromatography-mass spectrometry (GC-MS) analysis of volatile and semivolatile chemicals without cleanup process. Use of a gas flowing system, temperature control and a conventional microsyringe greatly increased the surface area of the liquid phase micro solvent, and led to quantitative recoveries of both volatile and semivolatile chemicals within short extraction time of only 2 min. Recoveries of polycyclic aromatic hydrocarbons (PAHs), organochlorine pesticides (OCPs) and alkylphenols (APs) determined were 85-107%, and reproducibility was between 2.8% and 8.5%. In particular, the technique shows high sensitivity for semivolatile chemicals which is difficult to achieve in other sample pretreatment techniques such as headspace-liquid phase microextraction. The variables affecting extraction efficiency such as gas flow rate, extraction time, extracting solvent type, temperature of sample and extracting solvent were investigated. Finally, the technique was evaluated to determine PAHs, APs and OCPs from plant and soil samples. The experimental results demonstrated that the technique is economic, sensitive to both volatile and semivolatile chemicals, is fast, simple to operate, and allows quantitative extraction. On-site monitoring of volatile and semivolatile chemicals is now possible using this technique due to the simplification and speed of sample treatment.

  16. Extracting Credible Dependencies for Averaged One-Dependence Estimator Analysis

    Directory of Open Access Journals (Sweden)

    LiMin Wang

    2014-01-01

    Full Text Available Of the numerous proposals to improve the accuracy of naive Bayes (NB by weakening the conditional independence assumption, averaged one-dependence estimator (AODE demonstrates remarkable zero-one loss performance. However, indiscriminate superparent attributes will bring both considerable computational cost and negative effect on classification accuracy. In this paper, to extract the most credible dependencies we present a new type of seminaive Bayesian operation, which selects superparent attributes by building maximum weighted spanning tree and removes highly correlated children attributes by functional dependency and canonical cover analysis. Our extensive experimental comparison on UCI data sets shows that this operation efficiently identifies possible superparent attributes at training time and eliminates redundant children attributes at classification time.

  17. Immunohistochemical Analysis of Platelet Extract Effects on Liver Injury Induced by CCl4 in Male Rats

    Directory of Open Access Journals (Sweden)

    Zahra Hesami

    2016-01-01

    Full Text Available Backgrounds & objectives: Liver damage results in a large accumulation of external cellular matrix that affects the function of this important body organ in a long term and finally stops its function completely. The growth factors existing in platelet extract are more cost-effective, available, and stable than recombinant ones. To determine whether the platelet extract effects on histological changes in liver injury induced by carbon tetrachloride (CCl4, we used immunohistochemical analysis in male rats. Methods: In this project the 28 male Wistar rats (250-300 g were randomly divided into 4 groups, each consisting of 7 animals. The rats were divided into four experimental groups as follows: the first group (sham intraperitoneally received only olive oil as the solvent of carbon tetrachloride; second group (CCl4 intraperitoneally received carbon tetrachloride dissolved in olive oil (ratio of about 1: 1 at a concentration of 1 ml/kg and a twice a week for eight weeks; third group subcutaneously received only platelet extract at a concentration of 0.5 ml/kg twice a week for three weeks; and fourth group received both CCl4 intraperitoneally for eight weeks and platelet extract subcutaneously for last three weeks. After 8 weeks of trial blood and liver sampling were done. Blood samples sent for enzymatic (AST, ALT tests and liver samples tested for histological and immunohistochemical studies. The data were analyzed using  one-way ANOVA followed by Tukey test by Graph pad Prism 5 software and data were considered significant at p≤ 0.05. Results: The results show that platelet extract causes a significant (p≤ 0.001 decrease in liver enzymes and albumin improves the function of liver. The level of alfa smooth muscle actin (α-SMA as an index of hepatic stellate cell activation was decreased by platelet extract administration which eventually reduced the necrosis and fibrosis induced by carbon tetrachloride in studied rats

  18. Blind extraction of an exoplanetary spectrum through Independent Component Analysis

    CERN Document Server

    Waldmann, Ingo P; Deroo, Pieter; Hollis, Morgan D J; Yurchenko, Sergey N; Tennyson, Jonathan

    2013-01-01

    Blind-source separation techniques are used to extract the transmission spectrum of the hot-Jupiter HD189733b recorded by the Hubble/NICMOS instrument. Such a 'blind' analysis of the data is based on the concept of independent component analysis. The de-trending of Hubble/NICMOS data using the sole assumption that nongaussian systematic noise is statistically independent from the desired light-curve signals is presented. By not assuming any prior, nor auxiliary information but the data themselves, it is shown that spectroscopic errors only about 10 - 30% larger than parametric methods can be obtained for 11 spectral bins with bin sizes of ~0.09 microns. This represents a reasonable trade-off between a higher degree of objectivity for the non-parametric methods and smaller standard errors for the parametric de-trending. Results are discussed in the light of previous analyses published in the literature. The fact that three very different analysis techniques yield comparable spectra is a strong indication of th...

  19. BLIND EXTRACTION OF AN EXOPLANETARY SPECTRUM THROUGH INDEPENDENT COMPONENT ANALYSIS

    Energy Technology Data Exchange (ETDEWEB)

    Waldmann, I. P.; Tinetti, G.; Hollis, M. D. J.; Yurchenko, S. N.; Tennyson, J. [Department of Physics and Astronomy, University College London, Gower Street, WC1E 6BT (United Kingdom); Deroo, P., E-mail: ingo@star.ucl.ac.uk [Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Pasadena, CA 91109-8099 (United States)

    2013-03-20

    Blind-source separation techniques are used to extract the transmission spectrum of the hot-Jupiter HD189733b recorded by the Hubble/NICMOS instrument. Such a 'blind' analysis of the data is based on the concept of independent component analysis. The detrending of Hubble/NICMOS data using the sole assumption that nongaussian systematic noise is statistically independent from the desired light-curve signals is presented. By not assuming any prior or auxiliary information but the data themselves, it is shown that spectroscopic errors only about 10%-30% larger than parametric methods can be obtained for 11 spectral bins with bin sizes of {approx}0.09 {mu}m. This represents a reasonable trade-off between a higher degree of objectivity for the non-parametric methods and smaller standard errors for the parametric de-trending. Results are discussed in light of previous analyses published in the literature. The fact that three very different analysis techniques yield comparable spectra is a strong indication of the stability of these results.

  20. A Simplified Rice DNA Extraction Protocol for PCR Analysis

    Institute of Scientific and Technical Information of China (English)

    CHEN Wen-yue; CUI Hai-rui; BAO Jin-song; ZHOU Xiang-sheng; SHU Qing-yao

    2006-01-01

    A simple protocol was established for DNA extraction using etiolated rice seedlings, whereby rice DNA was directly extracted ir 0.5 mol/L NaOH solution in a single eppendorf tube. Results of comparative PCR analyses and electrophoresis showed that the DNA extracted using this method was as good and useful as that using standard CTAB method.

  1. Extraction and identification of flavonoids from parsley extracts by HPLC analysis

    Science.gov (United States)

    Stan, M.; Soran, M. L.; Varodi, C.; Lung, I.

    2012-02-01

    Flavonoids are phenolic compounds isolated from a wide variety of plants, and are valuable for their multiple properties, including antioxidant and antimicrobial activities. In the present work, parsley (Petroselinum crispum L.) extracts were obtained by three different extraction techniques: maceration, ultrasonic-assisted and microwave-assisted solvent extractions. The extractions were performed with ethanol-water mixtures in various ratios. From these extracts, flavonoids like the flavones apigenin and luteolin, and the flavonols quercetin and kaempferol were identified using an HPLC Shimadzu apparatus equipped with PDA and MS detectors. The separation method involved a gradient step. The mobile phase consisted of two solvents: acetonitrile and distilled water with 0.1% formic acid. The separation was performed on a RP-C18 column.

  2. Extraction of the beta-factor for single quantum dots coupled to a photonic crystal waveguide

    DEFF Research Database (Denmark)

    Nielsen, Henri Thyrrestrup; Sapienza, Luca; Lodahl, Peter

    2010-01-01

    wavelength of single quantum dots is temperature tuned across the band edge of a photonic crystal waveguide and the spontaneous emission rate is recorded. Decay rates up to 5.7 ns−1, corresponding to a Purcell factor of 5.2, are measured and β-factors up to 85% are extracted. These results prove......We present measurements of the β-factor, describing the coupling efficiency of light emitted by single InAs/GaAs semiconductor quantum dots into a photonic crystal waveguide mode. The β-factor is evaluated by means of time resolved frequency-dependent photoluminescence spectroscopy. The emission...... the potential of photonic crystal waveguides in the realization of on-chip single-photon sources....

  3. Instrument for Solvent Extraction and Analysis (ISEE) of Organics from Regolith Simulant Using Supercritical Fluid Extraction and Chromatography

    Science.gov (United States)

    Franco, Carolina; Hintze, Paul E.

    2017-01-01

    ISEE is an instrument with the potential to perform extractions from regolith found on the surface of asteroids and planets, followed by characterization and quantitation of the extracts using supercritical fluid extraction (SFE) and chromatography (SFC). SFE is a developed technique proven to extract a wide range of organic compounds. SFC is similar to High Performance Liquid Chromatography (HPLC) but has the advantage of performing chiral separations without needing to derivatize the chiral compounds. CO2 will be the solvent for both stages as it is readily available in the Mars atmosphere. ISEE will capture CO2 from the environment, and use it for SFE and SFC. If successful, this would allow ISEE to perform analysis of organic compounds without using consumables. This paper will present results on a preliminary, proof-of-principle effort to use SFE and SFC to extract and analyze lunar regolith simulant spiked with organic compounds representing a range of organics that ISEE would expect to characterize. An optimization of variables for the extraction of the organics from the spiked regolith was successfully developed, using 138 bar pressure and 40 C temperature. The extraction flow rate was optimized at 2% SLPM with 30% methanol modifier. The extractions were successful with a value of 77.3+/- 0.9% of organics extracted. However, the recovery of organics after the extraction was very low with only 48.5+/-14.2%. Moreover, three columns were selected to analyze multiple samples at a time; two of them are Viridis HSS C18 SB and Torus DIOL, and the third column, specific for chiral separations, has not yet been selected yet.

  4. Extraction and analysis of polycyclic aromatic hydrocarbons (PAHs) by solid phase micro-extraction/supercritical fluid chromatography (SPME/SFC)

    Energy Technology Data Exchange (ETDEWEB)

    Lesellier, E. [Institut Universitaire de Technologie, (LETIAM), 91 - Orsay (France)

    1999-05-01

    Solid phase micro-extraction (SPME) is a clean and simple pre-concentration method. Previously used for trace analysis of volatile compounds, the use of SPME was extended to non volatile molecules with the development of an SPME/HPLC interface. This new interface allows the extraction and the analysis of high molecular weight compounds found in aqueous samples. Since superficial fluid chromatography is particularly well suited for analysis of complex mixtures containing non volatile compounds, the feasibility of coupling SPME and SFC has been investigated and applied to PAHs. Several points have been studied: behavior of interface and of fiber to superficial fluid and high pressure required by the analytical method; kind of the compounds transfer from the fiber to the analytical column; relation between the nature of the fibers and the quantity of extracted compounds; effect of salt addition. The results show that the SPME/SFC technic may be used for extraction and analysis of PAHs, since the quantity of extracted compounds reach 30 %. (author) 17 refs.

  5. Detection of key factors in the extraction and quantification of lycopene from tomato and tomato products.

    Science.gov (United States)

    Periago, María Jesús; Rincón, Francisco; Jacob, Karin; García-Alonso, Javier; Ros, Gaspar

    2007-10-31

    The analytical process of lycopene extraction and photometrical determination was critically examined for raw tomato and processed tomato products by means of a 2 IV (15-10) Plackett-Burman experimental design in order to identify the key factors (KFs) involved. Fifteen apparent key factors (AKFs) reported in the literature were selected: sample weight (X1); volume of extraction solution (X2); antioxidant concentration (BHT, X3); neutralizing agent concentration (MgCO 3, X4); light presence during lycopene extraction (X5), homogenization velocity (X6) and time (X7), agitation time (X8), and temperature (X9) during the extraction process; water volume for separation of polar/nonpolar phases (X11); presence of inert atmosphere throughout the process (X12); time (X13), temperature (X14), and light presence (X10) during separation of phases and time delay for reading (X15). In general, higher lycopene concentrations in samples led to a higher number of key factors (KF). Thus, for raw tomato (lycopene range 1.22-2.29 mg/100 g) no KF were found, whereas for tomato sauce (lycopene range from 5.80 to 8.60 mg/100 g) one KF (X4) and for tomato paste (lycopene range from 35.80 to 51.27 mg/100 g) five KFs (X1, X2, X4, X11, and X12) were detected. For lycopene paste, X1 and X2 were identified as the KFs with the greatest impact on results, although in fact the X1/X2 ratio was the real cause. The results suggest that, with increased processing, the physical and chemical structure of lycopene becomes less important since the identified KFs explain almost 90% of variability in tomato paste but only 32% in raw tomato.

  6. What Is Rotating in Exploratory Factor Analysis?

    Science.gov (United States)

    Osborne, Jason W.

    2015-01-01

    Exploratory factor analysis (EFA) is one of the most commonly-reported quantitative methodology in the social sciences, yet much of the detail regarding what happens during an EFA remains unclear. The goal of this brief technical note is to explore what "rotation" is, what exactly is rotating, and why we use rotation when performing…

  7. Stepwise Variable Selection in Factor Analysis.

    Science.gov (United States)

    Kano, Yutaka; Harada, Akira

    2000-01-01

    Takes several goodness-of-fit statistics as measures of variable selection and develops backward elimination and forward selection procedures in exploratory factor analysis. A newly developed variable selection program, SEFA, can print several fit measures for a current model and models obtained by removing an internal variable or adding an…

  8. Multilevel exploratory factor analysis of discrete data

    NARCIS (Netherlands)

    Barendse, M.T.; Oort, F.J.; Jak, S.; Timmerman, M.E.

    2013-01-01

    Exploratory factor analysis (EFA) can be used to determine the dimensionality of a set of items. When data come from clustered subjects, such as pupils within schools or children within families, the hierarchical structure of the data should be taken into account. Standard multilevel EFA is only sui

  9. Area specific stripping factors for AGS. A method for extracting stripping factors from survey data

    Energy Technology Data Exchange (ETDEWEB)

    Aage, H.K.; Korsbech, U. [Technical Univ. of Denmark (Denmark)

    2006-04-15

    In order to use Airborne Gamma-ray Spectrometry (AGS) for contamination mapping, for source search etc. one must to be able to eliminate the contribution to the spectra from natural radioactivity. This in general is done by a stripping technique. The parameters for performing a stripping have until recently been measured by recording gamma spectra at special calibration sites (pads). This may be cumbersome and the parameters may not be correct when used at low gamma energies for environmental spectra. During 2000-2001 DTU tested with success a new technique for Carborne Gamma-ray Spectrometry (CGS) where the spectra from the surveyed area (or from a similar area) were used for calculating the stripping parameters. It was possible to calculate usable stripping ratios for a number of low energy windows - and weak source signals not detectable by other means were discovered with the ASS technique. In this report it is shown that the ASS technique also works for AGS data, and it has been used for recent Danish AGS tests with point sources. (Check of calibration of AGS parameters.) By using the ASS technique with the Boden data (Barents Rescue) an exercise source was detected that has not been detected by any of the teams during the exercise. The ASS technique therefore seems to be better for search for radiation anomalies than any other method known presently. The experiences also tell that although the stripping can be performed correctly at any altitude there is a variation of the stripping parameters with altitude that has not yet been quite understood. However, even with the oddly variations the stripping worked as expected. It was also observed that one might calculate a single common set of usable stripping factors for all altitudes from the entire data set i.e. some average a, b and c values. When those stripping factors were used the stripping technique still worked well. (au)

  10. Microwave-Assisted Extraction Followed by Solid-Phase Extraction for the Chromatographic Analysis of Alkaloids in Stephania cepharantha.

    Science.gov (United States)

    Liu, Ying; Xie, Daotao; Kang, Yun; Wang, Yaqin; Yang, Ping; Guo, Jixian; Huang, Jianming

    2016-04-01

    A procedure involving microwave-assisted extraction (MAE) followed by solid-phase extraction (SPE) was established for the extraction and purification of three bisbenzylisoquinoline alkaloids from Stephania cepharantha, and a reversed-phase high-performance liquid chromatography (HPLC) method was developed for the quantification of the target alkaloids. Chromatographic separation was achieved on a Phenomenex Luna Phenyl-Hexyl column. Prior to the HPLC analysis, the alkaloids were rapidly extracted by an optimized MAE process using 0.01 mol/L hydrochloric acid as the solvent. The MAE extract was subsequently purified by SPE using a cation-exchange polymeric cartridge. The MAE-SPE procedure extracted the three alkaloids with satisfactory recoveries ranging from 100.44 to 102.12%. In comparison with the MAE, Soxhlet and ultrasonic-assisted extractions, the proposed MAE-SPE method showed satisfactory cleanup efficiency. Thus, the validated MAE-SPE-HPLC method is specific, accurate and applicable to the determination of alkaloids in S. cepharantha.

  11. An SPSSR -Menu for Ordinal Factor Analysis

    Directory of Open Access Journals (Sweden)

    Mario Basto

    2012-01-01

    Full Text Available Exploratory factor analysis is a widely used statistical technique in the social sciences. It attempts to identify underlying factors that explain the pattern of correlations within a set of observed variables. A statistical software package is needed to perform the calculations. However, there are some limitations with popular statistical software packages, like SPSS. The R programming language is a free software package for statistical and graphical computing. It offers many packages written by contributors from all over the world and programming resources that allow it to overcome the dialog limitations of SPSS. This paper offers an SPSS dialog written in theR programming language with the help of some packages, so that researchers with little or no knowledge in programming, or those who are accustomed to making their calculations based on statistical dialogs, have more options when applying factor analysis to their data and hence can adopt a better approach when dealing with ordinal, Likert-type data.

  12. Human Factors in Financial Trading: An Analysis of Trading Incidents.

    Science.gov (United States)

    Leaver, Meghan; Reader, Tom W

    2016-09-01

    This study tests the reliability of a system (FINANS) to collect and analyze incident reports in the financial trading domain and is guided by a human factors taxonomy used to describe error in the trading domain. Research indicates the utility of applying human factors theory to understand error in finance, yet empirical research is lacking. We report on the development of the first system for capturing and analyzing human factors-related issues in operational trading incidents. In the first study, 20 incidents are analyzed by an expert user group against a referent standard to establish the reliability of FINANS. In the second study, 750 incidents are analyzed using distribution, mean, pathway, and associative analysis to describe the data. Kappa scores indicate that categories within FINANS can be reliably used to identify and extract data on human factors-related problems underlying trading incidents. Approximately 1% of trades (n = 750) lead to an incident. Slip/lapse (61%), situation awareness (51%), and teamwork (40%) were found to be the most common problems underlying incidents. For the most serious incidents, problems in situation awareness and teamwork were most common. We show that (a) experts in the trading domain can reliably and accurately code human factors in incidents, (b) 1% of trades incur error, and (c) poor teamwork skills and situation awareness underpin the most critical incidents. This research provides data crucial for ameliorating risk within financial trading organizations, with implications for regulation and policy. © 2016, Human Factors and Ergonomics Society.

  13. Phosphogypsum analysis: total content and extractable element concentrations

    Energy Technology Data Exchange (ETDEWEB)

    Gennari, Roseli F.; Medina, Nilberto H., E-mail: rgennari@dfn.if.usp.br, E-mail: medina@if.usp.br [Departamento de Fisica Nuclear, Instituto de Fisica (USP), Sao Paulo, SP (Brazil); Garcia, Isabella; Silveira, Marcilei A.G., E-mail: shila@if.usp.br [Centro Universitario da FEI. Sao Bernardo do Campo, SP (Brazil)

    2011-07-01

    Phosphogypsum stand for the chemical origin gypsum generated in fertilizers production, in which phosphate rock is attacked by sulfuric acid resulting in phosphoric acid (H{sub 3}PO{sub 4}) and phosphate fertilizers. Phosphogypsum is not a commercial product and it is stocked in large open areas or accumulated in lakes inducing to a major environmental problem due to the presence of toxic and radioactive elements. The increasing world agricultural demand is the real responsible for the severity of this environmental problem. Nevertheless, there are some possibilities for the application of this reject material, such as civil construction, waste water treatment, and in cultivated lands, etc. In the agriculture the phosphogypsum is commonly used as a nutrient source due to its large amounts of phosphorus, calcium and sulfur. However, there are still some environmental questions related to the use of this by-product since phosphogypsum is classified as TENORM (Technologically Enhanced Naturally Occurring Radioactive Material), which is a solid waste containing heavy metals and naturally occurring radioactive elements from the rock matrix. In this work, Plasma Mass Spectrometry (ICP-MS) was used to study phosphogypsum samples. Several acid solutions for samples digestion were evaluated in order to be feasible the chemical analysis. BCR sequential extractions were also performed. The results showed analyte concentrations are highly dependent on the acid solution used. The BCR guidelines could not be applied as used for soil, since the phosphogypsum solubility is different. So, it would be necessary to use different mass aliquots in the extractions, to be feasible an environmental evaluation. (author)

  14. ANALYSIS OF THE FACTORS AFFECTING THE AVERAGE

    Directory of Open Access Journals (Sweden)

    Carmen BOGHEAN

    2013-12-01

    Full Text Available Productivity in agriculture most relevantly and concisely expresses the economic efficiency of using the factors of production. Labour productivity is affected by a considerable number of variables (including the relationship system and interdependence between factors, which differ in each economic sector and influence it, giving rise to a series of technical, economic and organizational idiosyncrasies. The purpose of this paper is to analyse the underlying factors of the average work productivity in agriculture, forestry and fishing. The analysis will take into account the data concerning the economically active population and the gross added value in agriculture, forestry and fishing in Romania during 2008-2011. The distribution of the average work productivity per factors affecting it is conducted by means of the u-substitution method.

  15. HPTLC finger prints analysis of phytophenols of Paederia foetida under different extraction regimen

    Directory of Open Access Journals (Sweden)

    S. C. PARIJA

    2013-01-01

    Full Text Available To detect and estimate the phenolics and flavonoids of Paederia foetida in different solvents under CP, MAEsystem and by HPTLC finger print analysis. Phenolic components in chlorophyll free extracts in different solventgroups were qualitatively detected by chemical tests and total polyphenols and flavonoids were quantitativelyestimated following standard protocol. Distinct chemo-profile of the components was analyzed by HPTLCtechnique with CAMAG win CATS planar chromatography manager software. Among two methods of extractionmore components of polyphenols were detected and significantly higher (p<0.05 contents of phenolics andflavonoids were estimated in MAE method than CP method. Out of five solvent types, organic solvent mixturesrecovered significantly higher polyphenols (p<0.05 and flavonoids (p<0.001 in comparison to aqueoussolvent. CP Method exhibits 12, 14, 14, 14 and 16 peaks for Gr-A, B, C, D and E solvents respectively. In MAEmethod the numbers of peaks in these respective solvent groups are 15, 21, 19, 18 and 22. Phyto-chemicals canbe better screened qualitatively and estimated quantitatively in organic solvent extracts under MAE system byHPTLC finger print analysis than the aqueous solvent and CP method.Abbreviations: CP: Cold Percolation, MAE: Microwave-Assisted Extraction, Rf: Retention factor, HPTLC: HighPressure Thin layer Liquid Chromatography

  16. Sharp mandibular bone irregularities after lower third molar extraction: Incidence, clinical features and risk factors

    Science.gov (United States)

    Alves-Pereira, Daniela; Valmaseda-Castellón, Eduard; Laskin, Daniel M.; Berini-Aytés, Leonardo; Gay-Escoda, Cosme

    2013-01-01

    Objectives: The purpose of this study was to determine the incidence and clinical symptoms associated with sharp mandibular bone irregularities (SMBI) after lower third molar extraction and to identify possible risk factors for this complication. Study Design: A mixed study design was used. A retrospective cohort study of 1432 lower third molar extractions was done to determine the incidence of SMBI and a retrospective case-control study was done to determine potential demographic and etiologic factors by comparing those patients with postoperative SMBI with controls. Results: Twelve SMBI were found (0.84%). Age was the most important risk factor for this complication. The operated side and the presence of an associated radiolucent image were also significantly related to the development of mandibular bone irregularities. The depth of impaction of the tooth might also be an important factor since erupted or nearly erupted third molars were more frequent in the SMBI group. Conclusions: SMBI are a rare postoperative complication after lower third molar removal. Older patients having left side lower third molars removed are more likely to develop this problem. The treatment should be the removal of the irregularity when the patient is symptomatic. Key words:Third molar, postoperative complication, bone irregularities, age. PMID:23524429

  17. Evaluation of growth conditions and DNA extraction techniques used in the molecular analysis of dermatophytes.

    Science.gov (United States)

    Gnat, S; Nowakiewicz, A; Ziółkowska, G; Trościańczyk, A; Majer-Dziedzic, B; Zięba, P

    2017-05-01

    Recent molecular methods for diagnosis of superficial mycoses have determined the need for a rapid and easy method of extracting DNA. The aim of study was to determine growth conditions and techniques of DNA extraction for Microsporum canis, Trichophyton mentagrophytes and T. verrucosum. Samples were prepared of each of the DNA extraction methods (phenol-chloroform, CTAB and four different kits) for all of the incubation periods (4, 7 and 10 days) of the cultures on the solid and in the liquid medium. The highest DNA concentrations were obtained using the phenol-chloroform method. The concentration of DNA extracted with the CTAB method accounted for 62·21%, for kits it corresponded from 35·53 to 15·41%. The analysis of the DNA weight yield revealed the highest isolation efficiency of the phenol-chloroform method, 1 mg of mycelium yielded 223·8 μg DNA. Lower DNA yield (by 39·32%) was obtained with the CTAB method; in the case of kits by 68·46-85·32%. In most of the techniques, the DNA yield on the solid medium was higher. In summary, the highest DNA yield was noted in the 7-day cultures and extraction with the phenol-chloroform method. Importantly, the type of culture was not relevant for the diagnostic result. Most mycoses are caused by fungi that reside in nature. The severity of the infection depends on the pathogenic attributes, socioeconomic factors and local environmental conditions. Recent diagnosis increasingly relies on not only the clinical features. Molecular identifications have determined the need for a rapid and easy method of extracting DNA. Usually two factors have to be considered: maximize the DNA yield and ensure that the extracted DNA is susceptible to enzymatic reactions. These data suggest that phenol-chloroform methods and a 7-day culture period may be useful for validation and constitute the first step of molecular diagnosis of dermatophytes. © 2017 The Society for Applied Microbiology.

  18. Extraction of Electromagnetic Transition Form Factors for Nucleon Resonances within a Dynamical Coupled-Channels Model

    Energy Technology Data Exchange (ETDEWEB)

    N. Suzuki, T. Sato, T.-S. H. Lee

    2010-10-01

    We explain the application of a recently developed analytic continuation method to extract the electromagnetic transition form factors for the nucleon resonances ($N^*$) within a dynamical coupled-channel model of meson-baryon reactions.Illustrative results of the obtained $N^*\\rightarrow \\gamma N$ transition form factors, defined at the resonance pole positions on the complex energy plane, for the well isolated $P_{33}$ and $D_{13}$, and the complicated $P_{11}$ resonances are presented. A formula has been developed to give an unified representation of the effects due to the first two $P_{11}$ poles, which are near the $\\pi\\Delta$ threshold, but are on different Riemann sheets. We also find that a simple formula, with its parameters determined in the Laurent expansions of $\\pi N \\rightarrow \\pi N$ and $\\gamma N \\rightarrow\\pi N$ amplitudes, can reproduce to a very large extent the exact solutions of the considered model at energies near the real parts of the extracted resonance positions. We indicate the differences between our results and those extracted from the approaches using the Breit-Wigner parametrization of resonant amplitudes to fit the data.

  19. Factors determining tooth extraction anxiety and fear in adult dental patients: a systematic review.

    Science.gov (United States)

    Astramskaitė, I; Poškevičius, L; Juodžbalys, G

    2016-12-01

    The aim of this study was to review previous studies and to identify reliable factors determining anxiety in adult patients undergoing tooth extraction procedures. An electronic literature search was conducted of the MEDLINE, ScienceDirect, SpringerLink, and Wiley Online Library databases covering the period January 2005 to May 2015. Sequential screening was performed at the title/abstract and full-text level. The review included all human prospective and retrospective follow-up studies and clinical trials, cohort studies, case-control studies, and case series that demonstrated at least one factor determining tooth extraction anxiety and/or fear and used specific scales for measurement. The search identified 16 articles meeting the inclusion criteria. Factors related to tooth extraction in patients were assessed: propensity to anxiety (P<0.05), pain experience or expectations (P<0.05), level of disturbance during the procedure (P<0.001), difficulty of the procedure (P=0.034), marital status (P=0.003), social class (P=0.012), and type of local anaesthesia (P=0.008). Using a video as the method of providing information (P<0.05) and having had a previous negative dental experience (P<0.05) led to an increase in patient anxiety level. Due to disagreements between studies, further investigations into the other factors are required to clarify the results. However, the absence of a single and appropriate scale that includes both the patient's evaluation and that of the doctor, hinders the rating of patient anxiety.

  20. Towards extracting the timelike pion form factor on CLS 2-flavour ensembles

    CERN Document Server

    Erben, Felix; Mohler, Daniel; Wittig, Hartmut

    2016-01-01

    Results are presented from an ongoing study of the $\\rho$ resonance. We use the distillation approach in order to create correlator matrices involving $\\rho$ and $\\pi\\pi$ interpolators. The study is done in a centre-of-mass frame and several moving frames. We are able to extract energy levels by solving the GEVP of those correlator matrices. The initial exploratory study is being done on a CLS 2-flavour lattice with a pion mass of $451$ $\\mathrm{MeV}$ using $\\mathcal{O}(a)$ improved Wilson fermions. One aim of this work is to extract the timelike pion form factor after applying the L\\"uscher formalism. We also plan to integrate this study with the existing Mainz programme for the calculation of the hadronic vacuum polarization contribution to the muon $g-2$ and will extend our study to lower pion masses and larger lattices in the future, including ensembles with $2+1$ flavours.

  1. Information- Theoretic Analysis for the Difficulty of Extracting Hidden Information

    Institute of Scientific and Technical Information of China (English)

    ZHANG Wei-ming; LI Shi-qu; CAO Jia; LIU Jiu-fen

    2005-01-01

    The difficulty of extracting hidden information,which is essentially a kind of secrecy, is analyzed by information-theoretic method. The relations between key rate, message rate, hiding capacity and difficulty of extraction are studied in the terms of unicity distance of stego-key, and the theoretic conclusion is used to analyze the actual extracting attack on Least Significant Bit(LSB) steganographic algorithms.

  2. The Effect of Hydroalcoholic Extract of Nectaroscordum Tripedale on Biochemical Factors in Diabetic Rats

    Directory of Open Access Journals (Sweden)

    S Paydar

    2015-08-01

    Full Text Available Background & aim: The therapeutic effects of traditional medicinal plants used in traditional medicine for many diseases have been proved. The present study was undertaken to investigate the effect of oral administration of different doses of hydroalcoholic extract of Nectaroscordum tripedale on biochemical factors. Method: Forty adult male Sprague Dawley rats were randomly divided into five groups of 8 animals as follows control group (recieved distilled water, control +50 mg/kg Nectaroscordum tripedale, diabetic control group (recieved distilled water, treatment group 1 (recieved 50mg/kg Nectaroscordum tripedale, treatment group 2 (recieved 100 mg/kg Nectaroscordum tripedales. The animals recieved Nectaroscordum tripedales extract by gavage for 21 days. Diabetes was induced by a single injection streptozotocin in rat (50 mg/kg b.w., ip. Before and 3 days after injection, 7, 14 and 21 days of treatment, the fasting glucose level and weight was measured. At the end of 21 days, blood samples collected from the heart puncture, after animals anesthetized with ether. The blood samples were analysed for lipid profile (total cholesterol, TG, HDL-c, LDL-c. Results: The results showed that the hydroalcoholic extract of Nectaroscordum tripedale could increase the average weight and decrease glucose in this period and also reduce cholesterol levels, triglyceride, and LDL-c dose dependent reduction at the end of 21 days (P <0/05. The hydroalcoholic extract of Nectaroscordum tripedale showed an overall beneficial effect on serum lipid profiles and biochemical factors. Conclusion: Nectaroscordum tripedale may act as an antidiabetic agent by increasing either the pancreatic secretion of insulin from the pancreas or its release from bound insulin and increasing insulin and improving pancreatic function. Moreover, the antioxidant properties may reduce the hydroxy-3-methyl-glutaryl-CoA reductase.

  3. Academic vocabulary in learner writing from extraction to analysis

    CERN Document Server

    Paquot, Magali

    2010-01-01

    Academic vocabulary is in fashion, as witnessed by the increasing number of books published on the topic. In the first part of this book, Magali Paquot scrutinizes the concept of academic vocabulary and proposes a corpus-driven procedure based on the criteria of keyness, range and evenness of distribution to select academic words that could be part of a common-core academic vocabulary syllabus. In the second part, the author offers a thorough analysis of academic vocabulary in the International Corpus of Learner English (ICLE) and describes the factors that account for learners difficulties in

  4. Information technology portfolio in supply chain management using factor analysis

    Directory of Open Access Journals (Sweden)

    Ahmad Jaafarnejad

    2013-11-01

    Full Text Available The adoption of information technology (IT along with supply chain management (SCM has become increasingly a necessity among most businesses. This enhances supply chain (SC performance and helps companies achieve the organizational competitiveness. IT systems capture and analyze information and enable management to make decisions by considering a global scope across the entire SC. This paper reviews the existing literature on IT in SCM and considers pertinent criteria. Using principal component analysis (PCA of factor analysis (FA, a number of related criteria are divided into smaller groups. Finally, SC managers can develop an IT portfolio in SCM using mean values of few extracted components on the relevance –emergency matrix. A numerical example is provided to explain details of the proposed method.

  5. Functional Factor Analysis In Sesame Under Water - Limiting Stress: New Concept On An Old Method

    Directory of Open Access Journals (Sweden)

    Mansouri Sadollah

    2014-12-01

    Full Text Available Multivariate statistical analysis, through their ability to extract hidden relationship between various traits, has a wide application in breeding programs. Having physiological concept on the multivariate analysis, factor analysis was used to extract differential relationships between different components involving in assimilate partitioning in sesame under regular irrigation regime and limited irrigation. The analysis revealed that under regular irrigation regime, the stored and/or currently produced assimilates are allocated to the filling seeds. However, incidence of water shortage in the beginning of flowering time make shifts in assimilate partitioning from formation of new seeds or capsules to the not-matured pre-formed seeds, which results in seeds with more nutrient storage. This indicates the requirement for change in breeding strategies under sub-optimal condition. The possible common language between factor concept in multivariate analysis, QTLs in genetics, and transcription factors in molecular biology is indicated.

  6. Nominal Performance Biosphere Dose Conversion Factor Analysis

    Energy Technology Data Exchange (ETDEWEB)

    M.A. Wasiolek

    2005-04-28

    This analysis report is one of the technical reports containing documentation of the Environmental Radiation Model for Yucca Mountain, Nevada (ERMYN), a biosphere model supporting the Total System Performance Assessment (TSPA) for the license application (LA) for the Yucca Mountain repository. This analysis report describes the development of biosphere dose conversion factors (BDCFs) for the groundwater exposure scenario, and the development of conversion factors for assessing compliance with the groundwater protection standards. A graphical representation of the documentation hierarchy for the ERMYN is presented in Figure 1-1. This figure shows the interrelationships among the products (i.e., analysis and model reports) developed for biosphere modeling and provides an understanding of how this analysis report contributes to biosphere modeling. This report is one of two reports that develop BDCFs, which are input parameters for the TSPA-LA model. The ''Biosphere Model Report'' (BSC 2004 [DIRS 169460]) describes in detail the ERMYN conceptual model and mathematical model. The input parameter reports, shown to the right of the ''Biosphere Model Report'' in Figure 1-1, contain detailed description of the model input parameters, their development, and the relationship between the parameters and specific features events and processes (FEPs). This report describes biosphere model calculations and their output, the BDCFs, for the groundwater exposure scenario. This analysis receives direct input from the outputs of the ''Biosphere Model Report'' (BSC 2004 [DIRS 169460]) and the five analyses that develop parameter values for the biosphere model (BSC 2005 [DIRS 172827]; BSC 2004 [DIRS 169672]; BSC 2004 [DIRS 169673]; BSC 2004 [DIRS 169458]; BSC 2004 [DIRS 169459]). The results of this report are further analyzed in the ''Biosphere Dose Conversion Factor Importance and Sensitivity Analysis

  7. Multi-response optimization of factors affecting ultrasonic assisted extraction from Iranian basil using central composite design.

    Science.gov (United States)

    Izadiyan, Parisa; Hemmateenejad, Bahram

    2016-01-01

    The present study reports on the extraction of antioxidant compounds from Iranian Ocimum basilicum. Central composite design (CCD) was used to investigate the effect of extraction variables on the ultrasound-assisted extraction (UAE). Three independent variables including temperature, methanol to water ratio percent, and sonication time were studied for simultaneous optimization of antioxidant capacity, total phenolic content and extraction yield. Both quantitative modeling and response surface methodology suggested that methanol to water ratio percent and extraction temperature were the most effective parameters of UAE process. However, sonication time was found out to be an insignificant factor in ultrasound-assisted extraction of antioxidant and total phenolic compounds of O. basilicum. The optimum conditions were determined as temperature of 59 °C, methanol to water ratio of 65.2% (v/v), and extraction time of 20 min.

  8. Clastogenic factors in the plasma of Chernobyl accident recovery workers: Anticlastogenic effect of Ginkgo biloba extract

    Energy Technology Data Exchange (ETDEWEB)

    Emerit, I.; Levy, A.; Cernjavski, L. [Universite Paris (France)] [and others

    1995-11-01

    Clastogenic factors are found in the plasma of persons irradiated accidentally or therapeutically. They persisted in the plasma of A-bomb survivors over 30 years. Clastogenic factors were found in 33 or 47 Chernobyl accident recovery workers (often referred to as liquidators) in a previous study. In the present study, we show that there is a positive correlation between clastogenic activity and dose and that these biomarkers of oxidative stress can be influenced successfully by appropriate antioxidant treatment. With the authorization of the Armenian Ministry of Health, 30 workers were treated with antioxidants from Ginkgo biloba leaves. The extract EGb 761 containing flavonoids and terpenoids was given at a daily dose of 3 x 40 mg (Tanakan, IPSEN, France) during 2 months. The clastogenic activity of the plasma was reduced to control levels on the first day after the end of the treatment. A 1-year follow-up showed that the benefit of the treatment persisted for at least 7 months. One-third of the workers again had clastogenic factors after 1 year, demonstrating that the process which produced clastogenic factors continued. However, the observation that antioxidants do not have to be given continuously is encouraging for intervention trials on a large-scale basis. These appear justified, since clastogenic factors are thought to be risk factors for the development of late effects of irradiation. 43 refs., 6 tabs.

  9. A kernel version of spatial factor analysis

    DEFF Research Database (Denmark)

    Nielsen, Allan Aasbjerg

    2009-01-01

    . Schölkopf et al. introduce kernel PCA. Shawe-Taylor and Cristianini is an excellent reference for kernel methods in general. Bishop and Press et al. describe kernel methods among many other subjects. Nielsen and Canty use kernel PCA to detect change in univariate airborne digital camera images. The kernel...... version of PCA handles nonlinearities by implicitly transforming data into high (even infinite) dimensional feature space via the kernel function and then performing a linear analysis in that space. In this paper we shall apply kernel versions of PCA, maximum autocorrelation factor (MAF) analysis...

  10. Simultaneous extraction, optimization, and analysis of flavonoids and polyphenols from peach and pumpkin extracts using a TLC-densitometric method.

    Science.gov (United States)

    Altemimi, Ammar; Watson, Dennis G; Kinsel, Mary; Lightfoot, David A

    2015-01-01

    The use of medicinal plants has been reported throughout human history. In the fight against illnesses, medicinal plants represent the primary health care system for 60 % of the world's population. Flavonoids are polyphenolic compounds with active anti-microbial properties; they are produced in plants as pigments. Quercetin, myricetin, and rutin are among the most well-known and prevalent flavonoids in plants, with an antioxidant activity capable of decreasing the oxidation of low density lipoproteins [LDLs]. To date, this research is the first of its kind to employ a coupled thin-layer chromatography (TLC) and a densitometric quantification method with a Box-Behnken design (BBD) response surface methodology (RSM) for optimization of ultrasonic-assisted extraction and determination of rutin and quercetin from peach and ellagic acid and myricetin from pumpkin fruits. The effect of process variables (extraction temperature (°C), extraction power (%) and extraction time (min)) on ultrasound-assisted extraction (UAE) were examined by using BBD and RSM. TLC followed by Quantity-One™ (BioRad) image analysis as a simple and rapid method was used for identification and quantification of the compounds in complex mixtures. The results were consistent under optimal conditions among the experimental values and their predicted values. A mass spectrometry (MALDI-TOF MS) technique was also used to confirm the identity of the natural products in the TLC spots resolved. The results show that the coupled TLC-densitometric methods & BBD can be a very powerful approach to qualitative and quantitative analysis of; rutin and quercetin from peach extracts; and ellagic acid and myricetin contents from pumpkin extracts.

  11. Identification of Key Odorants in Withering-Flavored Green Tea by Aroma Extract Dilution Analysis

    Science.gov (United States)

    Mizukami, Yuzo; Yamaguchi, Yuichi

    This research aims to identify key odorants in withering-flavored green tea. Application of the aroma extract dilution analysis using the volatile fraction of green tea and withering-flavored green tea revealed 25 and 35 odor-active peaks with the flavor dilution factors of≥4, respectively. 4-mercapto-4-methylpentan-2-one, (E)-2-nonenal, linalool, (E,Z)-2,6-nonadienal and 3-methylnonane-2,4-dione were key odorants in green tea with the flavor dilution factor of≥16. As well as these 5 odorants, 1-octen-3-one, β-damascenone, geraniol, β-ionone, (Z)-methyljasmonate, indole and coumarine contributed to the withering flavor of green tea.

  12. Comparative analysis of protocols for DNA extraction from soybean caterpillars.

    Science.gov (United States)

    Palma, J; Valmorbida, I; da Costa, I F D; Guedes, J V C

    2016-04-07

    Genomic DNA extraction is crucial for molecular research, including diagnostic and genome characterization of different organisms. The aim of this study was to comparatively analyze protocols of DNA extraction based on cell lysis by sarcosyl, cetyltrimethylammonium bromide, and sodium dodecyl sulfate, and to determine the most efficient method applicable to soybean caterpillars. DNA was extracted from specimens of Chrysodeixis includens and Spodoptera eridania using the aforementioned three methods. DNA quantification was performed using spectrophotometry and high molecular weight DNA ladders. The purity of the extracted DNA was determined by calculating the A260/A280 ratio. Cost and time for each DNA extraction method were estimated and analyzed statistically. The amount of DNA extracted by these three methods was sufficient for PCR amplification. The sarcosyl method yielded DNA of higher purity, because it generated a clearer pellet without viscosity, and yielded high quality amplification products of the COI gene I. The sarcosyl method showed lower cost per extraction and did not differ from the other methods with respect to preparation times. Cell lysis by sarcosyl represents the best method for DNA extraction in terms of yield, quality, and cost effectiveness.

  13. Determination of ethyl glucuronide in human hair samples: A multivariate analysis of the impact of extraction conditions on quantitative results.

    Science.gov (United States)

    Mueller, Alexander; Jungen, Hilke; Iwersen-Bergmann, Stefanie; Raduenz, Lars; Lezius, Susanne; Andresen-Streichert, Hilke

    2017-02-01

    Ethyl glucuronide (EtG), a minor metabolite of ethanol, is used as a direct alcohol biomarker for the prolonged detection of ethanol consumption. Hair testing for EtG offers retrospective, long-term detection of ethanol exposition for several months and has gained practical importance in forensic and clinical toxicology. Since quantitative results of EtG hair testings are included in interpretations, a rugged quantitation of EtG in hair matrix is important. As generally known, sample preparation is critical in hair testing, and the scope of this study was on extraction of EtG from hair matrix. The influence of extraction solvent, ultrasonication, incubation temperature, incubation time, solvent amount and hair particle size on quantitative results was investigated by a multifactorial experimental design using a validated analytical method and twelve different batches of authentic human hair material. Eight series of extraction experiments in a Plackett-Burman setup were carried out on each hair material with the studied factors at high or low levels. The effect of pulverization was further studied by two additional experimental series. Five independent samplings were performed for each run, resulting in a total number of 600 determinations. Considerable differences in quantitative EtG results were observed, concentrations above and below interpretative cut-offs were obtained from the same hair materials using different extraction conditions. Statistical analysis revealed extraction solvent and temperature as the most important experimental factors with significant influence on quantitative results. The impact of pulverization depended on other experimental factors and the different hair matrices themselves proved to be important predictors of extraction efficiency. A standardization of extraction procedures should be discussed, since it will probably reduce interlaboratory variabilities and improve the quality and acceptance of hair EtG analysis. Copyright © 2016

  14. THE EFFECT OF CONCENTRATION OF CARRIER, pH AND TIME OF EXTRACTION ON SEPARATION'S FACTOR OF PENICILLIN G - PHENYL ACETATE BY REACTIVE EXTRACTION

    Directory of Open Access Journals (Sweden)

    Imam Santoso

    2010-06-01

    Full Text Available The aim of this research is to study the effect of concentration carrier, pH and time of extraction on separation's factor of penicillin g - phenyl acetate by reactive extraction technique. The 10 mL  aqueous  solution with variation of  pH : 5, 6 contains 0.001 M penicillin G and 0.001 M phenyl acetate has been extracted with 10 mL n-butyl acetate contains dioctylamine as carrier. Variation concentration  of carrier were 0.000; 0.002; 0.004; 0.006 and 0.008 M. Variation time of extraction were 1, 5, 10, 15 and 20 min. The penicillin G and phenyl acetate that dissolved in organic phase ha been  reextracted with 10 mL aqueous with variation of pH : 7, 8. The optimum condition obtained as follow : concentration dioctylamine was 0.002M ; pH the first phase water was 5 and the second phase water was 8 ; and the time of extraction was 10 min.   Keywords: Separation factor, Reactive extraction

  15. What Is Rotating in Exploratory Factor Analysis?

    Directory of Open Access Journals (Sweden)

    Jason W. Osborne

    2015-01-01

    Full Text Available Exploratory factor analysis (EFA is one of the most commonly-reported quantitative methodology in the social sciences, yet much of the detail regarding what happens during an EFA remains unclear. The goal of this brief technical note is to explore what - rotation- is, what exactly is rotating, and why we use rotation when performing EFAs. Some commentary about the relative utility and desirability of different rotation methods concludes the narrative.

  16. An Automated Video Object Extraction System Based on Spatiotemporal Independent Component Analysis and Multiscale Segmentation

    Directory of Open Access Journals (Sweden)

    Zhang Xiao-Ping

    2006-01-01

    Full Text Available Video content analysis is essential for efficient and intelligent utilizations of vast multimedia databases over the Internet. In video sequences, object-based extraction techniques are important for content-based video processing in many applications. In this paper, a novel technique is developed to extract objects from video sequences based on spatiotemporal independent component analysis (stICA and multiscale analysis. The stICA is used to extract the preliminary source images containing moving objects in video sequences. The source image data obtained after stICA analysis are further processed using wavelet-based multiscale image segmentation and region detection techniques to improve the accuracy of the extracted object. An automated video object extraction system is developed based on these new techniques. Preliminary results demonstrate great potential for the new stICA and multiscale-segmentation-based object extraction system in content-based video processing applications.

  17. A Beginner’s Guide to Factor Analysis: Focusing on Exploratory Factor Analysis

    Directory of Open Access Journals (Sweden)

    An Gie Yong

    2013-10-01

    Full Text Available The following paper discusses exploratory factor analysis and gives an overview of the statistical technique and how it is used in various research designs and applications. A basic outline of how the technique works and its criteria, including its main assumptions are discussed as well as when it should be used. Mathematical theories are explored to enlighten students on how exploratory factor analysis works, an example of how to run an exploratory factor analysis on SPSS is given, and finally a section on how to write up the results is provided. This will allow readers to develop a better understanding of when to employ factor analysis and how to interpret the tables and graphs in the output.

  18. DNA analysis of molluscs from a museum wet collection: a comparison of different extraction methods.

    Science.gov (United States)

    Jaksch, Katharina; Eschner, Anita; Rintelen, Thomas V; Haring, Elisabeth

    2016-07-18

    DNA isolation and PCR amplification from molluscan taxa is considered as problematic because polysaccharides in tissue and mucus presumably co-precipitate with the DNA and inhibit the activity of DNA polymerase. In the present study we tested two common extraction methods on specimens from the mollusc collection of the Natural History Museum Vienna (NHMW). We analysed a broad variety of taxa covering a large temporal span (acquisition years 1877 to 1999), which distinguishes our study from previous ones where mostly fresh material was used. We also took other factors into account: effects of sample age, effects of formaldehyde treatment and taxon-specific problems. We used several primer combinations to amplify amplicons of different lengths of two mitochondrial genes: cytochrome c oxidase subunit 1 (COI) and 16S rRNA gene (16S). Overall PCR success was 43 % in the 576 extractions (including all primer combinations). The smallest amplicon (~240 bp) showed the best results (49 % positive reactions), followed by the 400 bp amplicon (40.5 %). Both short sections yielded significantly better results than the 700 bp long amplicon (27 %). Comparatively, the Gen-ial-First, All-tissue DNA-Kit-extraction method performed significantly better than Promega-Tissue and Hair Extraction Kit. Generally, PCR success is age-dependent. Nonetheless, we were able to obtain the longest amplicon even from 137-year-old material. Importantly, formaldehyde traces did not totally inhibit amplification success, although very high concentrations did. Museum material has gained importance for DNA analysis in recent years, especially for DNA barcoding projects. In some cases, however, the amplification of the standard barcoding region (partial sequence of the COI) is problematic with old material. Our study clearly shows that the COI barcoding region could be amplified in up to 49 % of PCRs (varying with amplicon length), which is, for museum samples, quite a high percentage. The

  19. Extracting sensitive spectrum bands of rapeseed using multiscale multifractal detrended fluctuation analysis

    Science.gov (United States)

    Jiang, Shan; Wang, Fang; Shen, Luming; Liao, Guiping; Wang, Lin

    2017-03-01

    Spectrum technology has been widely used in crop non-destructive testing diagnosis for crop information acquisition. Since spectrum covers a wide range of bands, it is of critical importance to extract the sensitive bands. In this paper, we propose a methodology to extract the sensitive spectrum bands of rapeseed using multiscale multifractal detrended fluctuation analysis. Our obtained sensitive bands are relatively robust in the range of 534 nm-574 nm. Further, by using the multifractal parameter (Hurst exponent) of the extracted sensitive bands, we propose a prediction model to forecast the Soil and plant analyzer development values ((SPAD), often used as a parameter to indicate the chlorophyll content) and an identification model to distinguish the different planting patterns. Three vegetation indices (VIs) based on previous work are used for comparison. Three evaluation indicators, namely, the root mean square error, the correlation coefficient, and the relative error employed in the SPAD values prediction model all demonstrate that our Hurst exponent has the best performance. Four rapeseed compound planting factors, namely, seeding method, planting density, fertilizer type, and weed control method are considered in the identification model. The Youden indices calculated by the random decision forest method and the K-nearest neighbor method show that our Hurst exponent is superior to other three Vis, and their combination for the factor of seeding method. In addition, there is no significant difference among the five features for other three planting factors. This interesting finding suggests that the transplanting and the direct seeding would make a big difference in the growth of rapeseed.

  20. Factor analysis identifies subgroups of constipation

    Institute of Scientific and Technical Information of China (English)

    Philip G Dinning; Mike Jones; Linda Hunt; Sergio E Fuentealba; Jamshid Kalanter; Denis W King; David Z Lubowski; Nicholas J Talley; Ian J Cook

    2011-01-01

    AIM: To determine whether distinct symptom groupings exist in a constipated population and whether such grouping might correlate with quantifiable pathophysiological measures of colonic dysfunction. METHODS: One hundred and ninety-one patients presenting to a Gastroenterology clinic with constipation and 32 constipated patients responding to a newspaper advertisement completed a 53-item, wide-ranging selfreport questionnaire. One hundred of these patients had colonic transit measured scintigraphically. Factor analysis determined whether constipation-related symptoms grouped into distinct aspects of symptomatology. Cluster analysis was used to determine whether individual patients naturally group into distinct subtypes. RESULTS: Cluster analysis yielded a 4 cluster solution with the presence or absence of pain and laxative unresponsiveness providing the main descriptors. Amongst all clusters there was a considerable proportion of patients with demonstrable delayed colon transit, irritable bowel syndrome positive criteria and regular stool frequency. The majority of patients with these characteristics also reported regular laxative use. CONCLUSION: Factor analysis identified four constipation subgroups, based on severity and laxative unresponsiveness, in a constipated population. However, clear stratification into clinically identifiable groups remains imprecise.

  1. [DNA extraction methods of compost for molecular ecology analysis].

    Science.gov (United States)

    Yang, Zhao-Hui; Xiao, Yong; Zeng, Guang-Ming; Liu, Yun-Guo; Deng, Jiu-Hua

    2006-08-01

    Molecular ecology provides new techniques for studying compost microbes, and the DNA extraction is the basis of molecular techniques. Because of the contamination of humic acids, it turns to be more difficult for compost microbial DNA extraction. Three different approaches, named as lysozyme lysis, ultrasonic lysis and proteinase K lysis with CTAB, were used to extract the total DNA from compost. The detection performed on a nucleic acids and protein analyzer showed that all the three approaches produced high DNA yields. The agarose gel electrophoresis showed that the DNA fragments extracted from compost had a length of about 23 kb. A eubacterial 16S rRNA gene targeted primer pair (27F and 1 495R) was used for PCR amplification, and all the samples got almost the full length 16S rDNA sequence (about 1.5 kb). After digested by restriction endonucleases (Hae Ill and Alu I), the restriction map showed relatively identical microbial diversity in the DNA, which was extracted by the three different approaches. All the compost microbial DNA extracted by the three different approaches could be used for molecular ecological study, and researchers should choose the right approach for extracting microbial DNA from compost based on the facts.

  2. A kernel version of spatial factor analysis

    DEFF Research Database (Denmark)

    Nielsen, Allan Aasbjerg

    2009-01-01

    of PCA and related techniques. An interesting dilemma in reduction of dimensionality of data is the desire to obtain simplicity for better understanding, visualization and interpretation of the data on the one hand, and the desire to retain sufficient detail for adequate representation on the other hand......Based on work by Pearson in 1901, Hotelling in 1933 introduced principal component analysis (PCA). PCA is often used for general feature generation and linear orthogonalization or compression by dimensionality reduction of correlated multivariate data, see Jolliffe for a comprehensive description...... version of PCA handles nonlinearities by implicitly transforming data into high (even infinite) dimensional feature space via the kernel function and then performing a linear analysis in that space. In this paper we shall apply kernel versions of PCA, maximum autocorrelation factor (MAF) analysis...

  3. Nominal Performance Biosphere Dose Conversion Factor Analysis

    Energy Technology Data Exchange (ETDEWEB)

    M. Wasiolek

    2004-09-08

    This analysis report is one of the technical reports containing documentation of the Environmental Radiation Model for Yucca Mountain, Nevada (ERMYN), a biosphere model supporting the Total System Performance Assessment (TSPA) for the license application (LA) for the Yucca Mountain repository. This analysis report describes the development of biosphere dose conversion factors (BDCFs) for the groundwater exposure scenario, and the development of conversion factors for assessing compliance with the groundwater protection standard. A graphical representation of the documentation hierarchy for the ERMYN is presented in Figure 1-1. This figure shows the interrelationships among the products (i.e., analysis and model reports) developed for biosphere modeling and provides an understanding of how this analysis report contributes to biosphere modeling. This report is one of two reports that develop biosphere BDCFs, which are input parameters for the TSPA-LA model. The ''Biosphere Model Report'' (BSC 2004 [DIRS 169460]) describes in detail the ERMYN conceptual model and mathematical model. The input parameter reports, shown to the right of the ''Biosphere Model Report'' in Figure 1-1, contain detailed description of the model input parameters, their development, and the relationship between the parameters and specific features events and processes (FEPs). This report describes biosphere model calculations and their output, the BDCFs, for the groundwater exposure scenario. The objectives of this analysis are to develop BDCFs for the groundwater exposure scenario for the three climate states considered in the TSPA-LA as well as conversion factors for evaluating compliance with the groundwater protection standard. The BDCFs will be used in performance assessment for calculating all-pathway annual doses for a given concentration of radionuclides in groundwater. The conversion factors will be used for calculating gross alpha particle

  4. Flavonoids content in extracts secang (Caesalpinia Sappan L.) maceration method infundation analysis and visible ultraviolet spectrophotometer

    National Research Council Canada - National Science Library

    Youstiana Dwi Rusita; Suhartono

    2016-01-01

    .... Analysis using univariate analysis. This study shows that there are types of flavonoids flavones, flavonols and flavanols on extracts of Caesalpinia sappan L results maceration method, and there are flavonoid types of flavones...

  5. In-Situ Liquid Extraction and Analysis Platform for Mars and Ocean Worlds

    Science.gov (United States)

    Kehl, F.; Wu, D.; Mora, M. F.; Creamer, J. S.; Willis, P. A.

    2016-10-01

    We present a compact sample extractor and analysis unit, based on subcritical water extraction and flow injection analysis, that could be used to support robotic missions seeking chemical signatures of life on Mars, Europa, Enceladus or Titan.

  6. Cleanup and analysis of sugar phosphates in biological extracts by using solid phase extraction and anion-exchange chromatography with pulsed amperometric detection

    DEFF Research Database (Denmark)

    Smith, Hans Peter; Cohen, A.; Buttler, T.

    1998-01-01

    A cleanup method based on anion-exchange solid-phase extraction (SPE) was developed to render biological extracts suitable for the analysis of hexose phosphates with a modified anion-exchange chromatography method and pulsed amperometric detection. The method was applied to cell extracts of Sacch......A cleanup method based on anion-exchange solid-phase extraction (SPE) was developed to render biological extracts suitable for the analysis of hexose phosphates with a modified anion-exchange chromatography method and pulsed amperometric detection. The method was applied to cell extracts...... of Saccharomyces cerevisiae obtained by using cold methanol as quenching agent and chloroform as extraction solvent. It was shown that pretreatment of the cell extract with SPE markedly improved the quality of the liquid chromatography analysis with recoveries of the sugar phosphates close to 100%. Furthermore...

  7. Semileptonic meson decays in point-form relativistic quantum mechanics: unambiguous extraction of weak form factors

    CERN Document Server

    Gomez-Rocha, Maria

    2014-01-01

    The point-form version of the Bakamjian-Thomas construction is applied to the description of several semileptonic decays of mesons. Weak form factors are extracted without ambiguity for pseudoscalar-to-pseudoscalar as well as for pseudoscalar-to-vector transitions of mesons from the most general covariant decomposition of the weak current. No manifestation of cluster-separability violation appears in the form of non-physical contributions to the structure of such a current, in contrast to what happens in the electromagnetic case. Moreover, no frame dependence is observed when we extract the form factors from the most general covariant decomposition of the current, which contrasts with analogous front-form calculations that involve vector mesons in the transition. We present our results for heavy-light meson decays, i.e. $B\\to D$, as well as for $B$ and $D$ mesons decaying into $\\pi$, $\\rho$ and $K^{(*)}$ and perform a numerical comparison with the analogous front-form approach. Differences between point and f...

  8. Chemical Analysis and Biological Activity of Jordanian Chamomile Extracts

    Directory of Open Access Journals (Sweden)

    Nawal Hassan Al Bahtiti

    2012-02-01

    Full Text Available The Jordanian chamomile (Matricaria chamomilla has been researched more thoroughly to evaluate its useful properties. It is investigated and found that Jordanian chamomile is rich in phenolic compounds, with beneficial biological activities. By applying the most promising HPLC method, the content of total phenolics in methanolic extract was determined according to the Folin-Clocalteu procedure, and was found (GAE>20 mg/g. The flavonoid types were found as flavones and flavonolos.The minimum inhibitory concentration values for methanolic extracts of Jordanian chamomile were determined for different kinds of bacteria. The extracts have activity against Staphylococcus aurous, candida albicans, Esherichia Coli, Betula pubescens and Pinus sylvestris. The activity has been observed to be due to the tannins and a pigenin present in the extract. To utilize these significant sources of natural compounds, further characterization of phenolic composition is needed.

  9. [Analysis of risk factors for perinatal brachial plexus palsy].

    Science.gov (United States)

    Gosk, Jerzy; Rutowski, Roman

    2005-04-01

    Risk factors of obstetrical brachial plexus palsy include: (1) large birth weight, (2) shoulder dystocia and prolonged second stage of labour, (3) instrumental vaginal delivery (forceps delivery, vacuum extraction), (4) diabetes mellitus and mother's obesity, (5) breech presentation, (6) delivery and infant with obstetrical brachial plexus palsy in antecedent delivery. The purpose was analysis of the classical risk factors for brachial plexus palsy based on our own clinical material. Clinical material consists of 83 children with obstetrical brachial plexus palsy treated at the Department of Trauma and Hand Surgery (surgically--54, conservatively--29). Control group consists of 56 healthy newborns. Data recorded included: birth weight, body length, head and chest circumference, Apgar test at 1 min., type of brachial palsy and side affected, type of birth, presentation, duration of delivery (II stage), age of mother, mother's diseases, parity. The infants treated surgically have had a significantly higher birth weight, body height, head and chest circumference, in compression with control group and group treated conservatively. The differences were statistically important. Shoulder dystocia occurred in 32.9% of all vaginal delivery. Instrumental vaginal delivery was observed in 11.3% and breech presentation in 4.9% cases. There were no incidences of obstetrical brachial plexus palsy recurrence. Diabetes mellitus and mother's obesity was found in 3 cases. (1) Fetal macrosomia is the important risk factor of the obstetrical brachial plexus palsy. (2) Obstetrical brachial plexus palsy may occur also in the absence of the classical risk factors.

  10. [The extractive: life and death of an uncommon product of proximate analysis].

    Science.gov (United States)

    Tomic, Sacha

    2011-04-01

    Issued from the pharmaceutical tradition, the "extractive", formerly "extract", is a typical artefact of proximate analysis introduced in the new nomenclature of 1787. After beign one of its most active promotors, Fourcroy published with Vauquelin a posthumous paper in 1810 in which he expressed some doubts about the substance. Theoretically present in almost all vegetable extracts, some chemists, pharmacists and physicians try to isolate the extractive without success and instead accumulated contradictory results. At the end, the eviction of this chimaera held by sceptical chemists such as Chevreul and Braconnot and the conversion of other analysts, dismissed extractive and the name almost gradually disappears at the begining of the 1830s.

  11. Overall uncertainty measurement for near infrared analysis of cryptotanshinone in tanshinone extract

    Science.gov (United States)

    Xue, Zhong; Xu, Bing; Shi, Xinyuan; Yang, Chan; Cui, Xianglong; Luo, Gan; Qiao, Yanjiang

    2017-01-01

    This study presented a new strategy of overall uncertainty measurement for near infrared (NIR) quantitative analysis of cryptotanshinone in tanshinone extract powders. The overall uncertainty of NIR analysis from validation data of precision, trueness and robustness study was fully investigated and discussed. Quality by design (QbD) elements, such as risk assessment and design of experiment (DOE) were utilized to organize the validation data. An "I × J × K" (series I, the number of repetitions J and level of concentrations K) full factorial design was used to calculate uncertainty from the precision and trueness data. And a 27-4 Plackett-Burmann matrix with four different influence factors resulted from the failure mode and effect analysis (FMEA) analysis was adapted for the robustness study. The overall uncertainty profile was introduced as a graphical decision making tool to evaluate the validity of NIR method over the predefined concentration range. In comparison with the T. Saffaj's method (Analyst, 2013, 138, 4677.) for overall uncertainty assessment, the proposed approach gave almost the same results, demonstrating that the proposed method was reasonable and valid. Moreover, the proposed method can help identify critical factors that influence the NIR prediction performance, which could be used for further optimization of the NIR analytical procedures in routine use.

  12. Overall uncertainty measurement for near infrared analysis of cryptotanshinone in tanshinone extract.

    Science.gov (United States)

    Xue, Zhong; Xu, Bing; Shi, Xinyuan; Yang, Chan; Cui, Xianglong; Luo, Gan; Qiao, Yanjiang

    2017-01-01

    This study presented a new strategy of overall uncertainty measurement for near infrared (NIR) quantitative analysis of cryptotanshinone in tanshinone extract powders. The overall uncertainty of NIR analysis from validation data of precision, trueness and robustness study was fully investigated and discussed. Quality by design (QbD) elements, such as risk assessment and design of experiment (DOE) were utilized to organize the validation data. An "I×J×K" (series I, the number of repetitions J and level of concentrations K) full factorial design was used to calculate uncertainty from the precision and trueness data. And a 2(7-4) Plackett-Burmann matrix with four different influence factors resulted from the failure mode and effect analysis (FMEA) analysis was adapted for the robustness study. The overall uncertainty profile was introduced as a graphical decision making tool to evaluate the validity of NIR method over the predefined concentration range. In comparison with the T. Saffaj's method (Analyst, 2013, 138, 4677.) for overall uncertainty assessment, the proposed approach gave almost the same results, demonstrating that the proposed method was reasonable and valid. Moreover, the proposed method can help identify critical factors that influence the NIR prediction performance, which could be used for further optimization of the NIR analytical procedures in routine use.

  13. Flavonoids from Rhizophora conjugata fruit extract blocks virulence factors of Pseudomonas aeruginosa

    Digital Repository Service at National Institute of Oceanography (India)

    Naik, D.; Tilvi, S.; DeSouza, L.

    : chloroform (1:1) extracts of 7 mangrove plants on P. aeruginosa ATCC 27853 motilities (swarming, swimming and twitching). Amongst the 22 extracts tested, methanolic extract of Rhizophora conjugata fruit showed maximum inhibition. The butanol (RcBu) fraction...

  14. Analysis of human muscle extracts by proton NMR

    Energy Technology Data Exchange (ETDEWEB)

    Venkatasubramanian, P.N.; Barany, M.; Arus, C.

    1986-03-01

    Perchloric acid extracts were prepared from pooled human muscle biopsies from patients diagnosed with scoliosis (SCOL) and cerebral palsy (CP). After neutralization with KOH and removal of perchlorate, the extracts were concentrated by freeze drying and dissolved in /sup 2/H/sub 2/O to contain 120 O.D. units at 280 nm per 0.5 ml. /sup 1/H NMR spectroscopy was performed with the 5 mm probe of a Varian XL300 instrument. Creatine, lactate, carnosine, and choline were the major resonances in the one-dimensional spectra of both extracts. With creatine as reference, 2.5-fold more lactate was found in SCOL than in CP, and a much smaller difference was also found in their carnosine content. Two-dimensional COSY comparison revealed several differences between the two extracts. Taurine, N-acetyl glutamate, glycerophosphoryl choline (or phosphoryl choline) and an unidentified spot were present only in the extract from SCOL but not in that from CP. On the other hand, aspartate, hydroxy-proline, carnitine and glycerophosphoryl ethanolamine were only present in CP but absent in SCOL. Alanine, cysteine, lysine and arginine appeared in both extracts without an apparent intensity difference.

  15. 提取因素对木瓜籽油提取率的影响%Effect of Extracting Factors on Extraction Rate of Papaya Seed Oil

    Institute of Scientific and Technical Information of China (English)

    张海涛; 张海容; 徐撒撒

    2012-01-01

    [Objective] The objective was to study the effects of different factors on the extraction rate of papaya seed oil, and confirm the optimum the technology conditions for extracting the papaya seed oil. [Method] With the papaya seed in the market-sold shine skin papaya as the tested material, the papaya seed oil was extracted by Soxhlet extraction method. The effects of the different extraction time, liquid-material ratio and extraction temperature on the extraction rate of the papaya seed oil were discussed and the optimum the conditions for extracting the papaya seed oil were confirmed through the single factor test and the orthogonal test. [ Result ] The single factor test showed that the optimum the extraction time for extracting the papaya seed oil was 9 h, the optimum liquid-material ratio was 8:1 and the optimum extraction temperature was 45 ℃. The orthogonal experiments based on the single factor test indicated that, the optimum the conditions for extracting the papaya seed oil were as follows; the extraction time of 9 h, liquid-material ratio of 7:1 and the extraction temperature of 48 ℃, under which, the oil yield of the papaya seed was 28.77%. [Conclusion] The study provided the reference basis for the comprehensive utilization and the development of the new products.%[目的]研究不同因素对木瓜籽油提取率的影响,确定木瓜籽油提取的最佳工艺条件.[方法]以市售光皮木瓜中的木瓜籽为试材,采用索式提取法提取木瓜籽油,通过单因素和正交试验,探讨不同的提取时间、液料比和提取温度对木瓜籽油提取率的影响,确定木瓜籽油提取的最佳条件.[结果]单因素试验表明,木瓜籽油提取的最佳提取时间为9h,最佳液料比为8:1,最佳提取温度为45℃.在此基础进行的正交试验表明,木瓜籽油提取的最佳提取条件为:提取时间9h、液料比7:1、提取温度为48℃,在此条件下,木瓜籽的出油率为28.77%.[结论]该研究为木瓜

  16. Analysis of Ultra Linguistic Factors in Interpretation

    Institute of Scientific and Technical Information of China (English)

    姚嘉

    2015-01-01

    The quality of interpretation is a dynamic conception, involving a good deal of variables, such as the participants, the situations, working conditions, cultures etc.. Therefore, in interpretation, those static elements, such as traditional grammars and certain linguistic rules can not be counted as the only criteria for the quality of interpretation. That is, there are many other non-language elements—Ultra-linguistic factors that play an important role in interpretation. Ultra-linguistic factors get rid of the bounding of traditional grammar and parole, and reveal the facts in an indirect way. This paper gives a brief analysis of Ultra Lin⁃guistic elements in interpretation in order to achieve better result in interpretation practice.

  17. Factor Rotation and Standard Errors in Exploratory Factor Analysis

    Science.gov (United States)

    Zhang, Guangjian; Preacher, Kristopher J.

    2015-01-01

    In this article, we report a surprising phenomenon: Oblique CF-varimax and oblique CF-quartimax rotation produced similar point estimates for rotated factor loadings and factor correlations but different standard error estimates in an empirical example. Influences of factor rotation on asymptotic standard errors are investigated using a numerical…

  18. Feasibility of corona discharge ion mobility spectrometry for direct analysis of samples extracted by dispersive liquid-liquid microextraction.

    Science.gov (United States)

    Jafari, Mohammad T; Riahi, Farhad

    2014-05-23

    The capability of corona discharge ionization ion mobility spectrometry (CD-IMS) for direct analysis of the samples extracted by dispersive liquid-liquid microextraction (DLLME) was investigated and evaluated, for the first time. To that end, an appropriate new injection port was designed and constructed, resulting in possibility of direct injection of the known sample volume, without tedious sample preparation steps (e.g. derivatization, solvent evaporation, and re-solving in another solvent…). Malathion as a test compound was extracted from different matrices by a rapid and convenient DLLME method. The positive ion mobility spectra of the extracted malathion were obtained after direct injection of carbon tetrachloride or methanol solutions. The analyte responses were compared and the statistical results revealed the feasibility of direct analysis of the extracted samples in carbon tetrachloride, resulting in a convenient methodology. The coupled method of DLLME-CD-IMS was exhaustively validated in terms of sensitivity, dynamic range, recovery, and enrichment factor. Finally, various real samples of apple, river and underground water were analyzed, all verifying the feasibility and success of the proposed method for the easy extraction of the analyte using DLLME separation before the direct analysis by CD-IMS.

  19. Analysis of volatiles in Pinotage wines by stir bar sorptive extraction and chemometric profiling.

    Science.gov (United States)

    Weldegergis, Berhane T; Crouch, Andrew M

    2008-11-12

    A fast, simple, cost-effective, and reliable method based on stir bar sorptive extraction (SBSE) in the headspace mode was used for the analysis of 39 volatile components in Pinotage wines. The method was sensitive, with LODs ranging from 50.0 pg/L to 281 ng/L and LOQs between 180 pg/L and 938 ng/L. Precision was between 6 and 20%. The intermediate precision was within the acceptable range. Moreover, good calibration curves with R(2) > 0.99 for all compounds were achieved. The method was successfully applied for the analysis of 87 young Pinotage wines of vintages 2005 and 2006 collected from various South African regions. To characterize the results based on vintage and origin, the obtained concentrations of the compounds were subjected to chemometric analysis. Exploratory factor analysis (FA), principal component analysis (PCA), and analysis of variance (one-way ANOVA) were consecutively done. The chemometrics approach revealed a reasonable correlation among the volatile components of these wines, as well as with respect to their year of production.

  20. Analysis of PAHs in human serum using cloud point extraction and LC/MS

    Energy Technology Data Exchange (ETDEWEB)

    Sirimanne, S.R.; Ma, Li; McClure, C. [National Center for Health, Environmental Health and Lab. Sciences, Atlanta, GA (United States)

    1995-12-31

    In these laboratories, the authors assess human exposure to environmental toxicants by quantifying the levels of target toxicants in serum of exposed individuals. The levels of target analytes are often in trace levels and hence preconcentration and cleanup are prerequisites to the analysis of these trace toxicants. The authors have identified cloud point extraction as an impressive alternative to conventional solvent extraction due its beneficial properties and the greater extraction efficiencies. The authors report for the first time, extraction of PAHs from human serum using cloud point technology and analysis by HPLC.

  1. Dispersive analysis of the scalar form factor of the nucleon

    CERN Document Server

    Hoferichter, M; Kubis, B; Meißner, U -G

    2012-01-01

    Based on the recently proposed Roy-Steiner equations for pion-nucleon scattering, we derive a system of coupled integral equations for the pi pi --> N-bar N and K-bar K --> N-bar N S-waves. These equations take the form of a two-channel Muskhelishvili-Omnes problem, whose solution in the presence of a finite matching point is discussed. We use these results to update the dispersive analysis of the scalar form factor of the nucleon fully including K-bar K intermediate states. In particular, we determine the correction Delta_sigma=sigma(2M_pi^2)-sigma_{pi N}, which is needed for the extraction of the pion-nucleon sigma term from pi N scattering, as a function of pion-nucleon subthreshold parameters and the pi N coupling constant.

  2. Model correction factor method for system analysis

    DEFF Research Database (Denmark)

    Ditlevsen, Ove Dalager; Johannesen, Johannes M.

    2000-01-01

    The Model Correction Factor Method is an intelligent response surface method based on simplifiedmodeling. MCFM is aimed for reliability analysis in case of a limit state defined by an elaborate model. Herein it isdemonstrated that the method is applicable for elaborate limit state surfaces on which...... severallocally most central points exist without there being a simple geometric definition of the corresponding failuremodes such as is the case for collapse mechanisms in rigid plastic hinge models for frame structures. Taking as simplifiedidealized model a model of similarity with the elaborate model...... surface than existing in the idealized model....

  3. Disruptive Event Biosphere Dose Conversion Factor Analysis

    Energy Technology Data Exchange (ETDEWEB)

    M. Wasiolek

    2004-09-08

    This analysis report is one of the technical reports containing documentation of the Environmental Radiation Model for Yucca Mountain, Nevada (ERMYN), a biosphere model supporting the total system performance assessment (TSPA) for the license application (LA) for the Yucca Mountain repository. This analysis report describes the development of biosphere dose conversion factors (BDCFs) for the volcanic ash exposure scenario, and the development of dose factors for calculating inhalation dose during volcanic eruption. A graphical representation of the documentation hierarchy for the ERMYN is presented in Figure 1-1. This figure shows the interrelationships among the products (i.e., analysis and model reports) developed for biosphere modeling and provides an understanding of how this analysis report contributes to biosphere modeling. This report is one of two reports that develop biosphere BDCFs, which are input parameters for the TSPA model. The ''Biosphere Model Report'' (BSC 2004 [DIRS 169460]) describes in detail the ERMYN conceptual model and mathematical model. The input parameter reports, shown to the right of the Biosphere Model Report in Figure 1-1, contain detailed descriptions of the model input parameters, their development and the relationship between the parameters and specific features, events and processes (FEPs). This report describes biosphere model calculations and their output, the BDCFs, for the volcanic ash exposure scenario. This analysis receives direct input from the outputs of the ''Biosphere Model Report'' (BSC 2004 [DIRS 169460]) and from the five analyses that develop parameter values for the biosphere model (BSC 2004 [DIRS 169671]; BSC 2004 [DIRS 169672]; BSC 2004 [DIRS 169673]; BSC 2004 [DIRS 169458]; and BSC 2004 [DIRS 169459]). The results of this report are further analyzed in the ''Biosphere Dose Conversion Factor Importance and Sensitivity Analysis''. The objective of this

  4. Data and Knowledge Extraction Based on Structure Analysis of Homogeneous Websites

    Directory of Open Access Journals (Sweden)

    Mohammed Abdullah Hassan Al-Hagery

    2014-11-01

    Full Text Available The World Wide Web includes several types of website applications. Mainly these applications are related to business, organizations, companies, and others. There is a lack to get raw data sets to study the behavior of the internal structure of each type of these websites. Where websites structures include treasure of links, and sub-links, in addition to some embedded features associated with the internal structure of each website. The objective of this paper is to analysis a set of homogeneous websites to establish raw data sets. These data sets can be employed for several research purposes. It also can be used to extract some invisible aspects/features within the structure. Several steps are required to accomplish this objective; first, to propose an algorithm for structure analysis, second, to implement the proposed algorithm as a software tool for the purpose of extraction and establishment of raw data sets (real data set, third, to extrapolate a set of rules or relations from these data sets. This data set can be employed for researches purposes in the field of web structure mining, to estimate important factors related to websites development processes, and websites ranking. The results comprise creation of Oriented Data Sets (ODS for research purposes and also for deducing a set of features represents a type of new discovered knowledge in this ODS.

  5. A review of the extraction and chromatographic determination methods for the analysis of parabens.

    Science.gov (United States)

    Piao, Chunying; Chen, Ligang; Wang, Yu

    2014-10-15

    Parabens are a family of most widely used antimicrobial preservatives in food ingredients, cosmetic consumer products and pharmaceutical preparations. But several recent studies have cautioned that exposure to parabens may have more harmful consequences on animal and human health than what we realized previously, which made the analysis of parabens necessary. In this paper, we reviewed main sample preparation methods and chromatographic analysis methods proposed in formerly published works dealing with the analysis of parabens in different matrices. The sample preparation methods included ultrasonic assisted extraction, supercritical fluid extraction, pressurized liquid extraction, solid phase extraction, solid phase microextraction, liquid phase microextraction, dispersive liquid-liquid microextraction, stir bar sorptive extraction and matrix solid phase dispersion. The chromatographic analysis methods involved liquid chromatography, gas chromatography, and capillary electrophoresis. Copyright © 2014 Elsevier B.V. All rights reserved.

  6. Analysis of the Interactions of Botanical Extract Combinations Against the Viability of Prostate Cancer Cell Lines

    Directory of Open Access Journals (Sweden)

    Lynn S. Adams

    2006-01-01

    Full Text Available Herbal medicines are often combinations of botanical extracts that are assumed to have additive or synergistic effects. The purpose of this investigation was to compare the effect of individual botanical extracts with combinations of extracts on prostate cell viability. We then modeled the interactions between botanical extracts in combination isobolographically. Scutellaria baicalensis, Rabdosia rubescens, Panax-pseudo ginseng, Dendranthema morifolium, Glycyrrhiza uralensis and Serenoa repens were collected, taxonomically identified and extracts prepared. Effects of the extracts on cell viability were quantitated in prostate cell lines using a luminescent ATP cell viability assay. Combinations of two botanical extracts of the four most active extracts were tested in the 22Rv1 cell line and their interactions assessed using isobolographic analysis. Each extract significantly inhibited the proliferation of prostate cell lines in a time- and dose-dependent manner except repens. The most active extracts, baicalensis, D. morifolium, G. uralensis and R. rubescens were tested as two-extract combinations. baicalensis and D. morifolium when combined were additive with a trend toward synergy, whereas D. morifolium and R. rubescens together were additive. The remaining two-extract combinations showed antagonism. The four extracts together were significantly more effective than the two-by-two combinations and the individual extracts alone. Combining the four herbal extracts significantly enhanced their activity in the cell lines tested compared with extracts alone. The less predictable nature of the two-way combinations suggests a need for careful characterization of the effects of each individual herb based on their intended use.

  7. Process optimization and analysis of microwave assisted extraction of pectin from dragon fruit peel.

    Science.gov (United States)

    Thirugnanasambandham, K; Sivakumar, V; Prakash Maran, J

    2014-11-04

    Microwave assisted extraction (MAE) technique was employed for the extraction of pectin from dragon fruit peel. The extracting parameters were optimized by using four-variable-three-level Box-Behnken design (BBD) coupled with response surface methodology (RSM). RSM analysis indicated good correspondence between experimental and predicted values. 3D response surface plots were used to study the interactive effects of process variables on extraction of pectin. The optimum extraction conditions for the maximum yield of pectin were power of 400 W, temperature of 45 °C, extracting time of 20 min and solid-liquid ratio of 24 g/mL. Under these conditions, 7.5% of pectin was extracted. Copyright © 2014 Elsevier Ltd. All rights reserved.

  8. Gas chromatography-mass spectrometry analysis of various organic extracts ofMerremia borneensisfrom Sabah

    Institute of Scientific and Technical Information of China (English)

    M Amzad Hossain; Muhammad Dawood Shah; Mahyar Sakari

    2011-01-01

    Objective:To analyse the chemical composition of different extracts ofMerremia borneensis (M. borneensis) by gas chromatography-mass spectrometry (GC-MS).Methods: The dried leaves powder was extracted with methanol at room temperature by using Soxhlet extractor. Methanol crude extracts ofM. borneensis were extrastel with hexane, chloroform, ethyl acetate and butanol. Results: Qualitative analyses of various organic crude extracts showed that majority of these are flavonoids, terpeniods, alkaloids and glycosides. Most of the identified compounds by GC-MS are biologically important. Further theM. borneensisleaf possesses certain characteristics that can be ascribed to cultivation on a domestic plantation.Conclusions: The suitable extracts for respective compounds can be chosen on the basis of aboveGC-MS analysis. All the major compounds from different extracts are biologically active molecules. Thus the identification of a good number of compounds from various extractsM. borneensis might have some ecological significance.

  9. Extraction of intracellular protein from Glaciozyma antarctica for proteomics analysis

    Science.gov (United States)

    Faizura, S. Nor; Farahayu, K.; Faizal, A. B. Mohd; Asmahani, A. A. S.; Amir, R.; Nazalan, N.; Diba, A. B. Farah; Muhammad, M. Nor; Munir, A. M. Abdul

    2013-11-01

    Two preparation methods of crude extracts of psychrophilic yeast Glaciozyma antarctica were compared in order to obtain a good recovery of intracellular proteins. Extraction with mechanical procedures using sonication was found to be more effective for obtaining good yield compare to alkaline treatment method. The procedure is simple, rapid, and produce better yield. A total of 52 proteins were identified by combining both extraction methods. Most of the proteins identified in this study involves in the metabolic process including glycolysis pathway, pentose phosphate pathway, pyruyate decarboxylation and also urea cyle. Several chaperons were identified including probable cpr1-cyclophilin (peptidylprolyl isomerase), macrolide-binding protein fkbp12 and heat shock proteins which were postulate to accelerate proper protein folding. Characteristic of the fundamental cellular processes inferred from the expressed-proteome highlight the evolutionary and functional complexity existing in this domain of life.

  10. Thermal extraction analysis of five Los Azufres production wells

    Energy Technology Data Exchange (ETDEWEB)

    Kruger, Paul; Quijano, Luis

    1995-01-26

    Thermal energy extraction from five wells supplying 5-MWe wellhead generators in three zones of the Los Azufres geothermal field has been examined from production and chemical data compiled over 14-years of operation. The data, as annual means, are useful in observing small-scale changes in reservoir performance with continuous production. The chemical components are chloride for quality control and the geothermometer elements for reservoir temperatures. The flowrate and fluid enthalpy data are used to calculate the thermal extraction rates. Integration of these data provides an estimate of the total energy extracted from the zone surrounding the well. The combined production and chemical geothermometer data are used to model the produced fluid as coming from just-penetrating wells for which the annual produced mass originates from a series of concentric hemispheric shells moving out into the reservoir. Estimates are made of the drawdown distance into the reservoir and the far-field conditions.

  11. Rapid method for the determination of 16 organochlorine pesticides in sesame seeds by microwave-assisted extraction and analysis of extracts by gas chromatography-mass spectrometry.

    Science.gov (United States)

    Papadakis, Emmanouil N; Vryzas, Zisis; Papadopoulou-Mourkidou, Euphemia

    2006-09-15

    A method for the multiresidue analysis of 16 organochlorine insecticides in sesame seeds has been developed. The method is based on the microwave-assisted extraction (MAE) of the sesame seeds by the use of a water-acetonitrile mixture followed by Florisil clean-up of the extracts and subsequent analysis by gas chromatography-mass spectrometry (GC/MS) in the selected ion monitoring (SIM) mode. MAE operational parameters (extraction solvent, temperature and time, extractant volume) were optimized with respect to extraction efficiency of the target compounds from sesame seeds with 46% oil content. Recoveries >80% with relative standard deviations (RSD) seed samples imported to Greece.

  12. Phytochemical Analysis and Antioxidant Activity of Salvia chloroleuca Aerial Extracts

    Science.gov (United States)

    Salimikia, Iraj; Reza Monsef-Esfahani, Hamid; Gohari, Ahmad Reza; Salek, Mehrnoosh

    2016-01-01

    Background Salvia, known as Maryam Goli in the Persian language, is an important genus that includes approximately 900 species in the Lamiaceae family. There are 58 Salvia species growing naturally in Iran, including Salvia chloroleuca Rech. f. and Allen., which grows wild in the northeastern and central parts of the country. Objectives This study was designed to determine the chemical composition, in vitro antioxidant activity, and total phenol content of various extracts of S. chloroleuca. Materials and Methods Dried aerial parts of the plant were crushed, then sequentially extracted with n-hexane, ethyl acetate, and methanol. The fractions of S. chloroleuca were subjected to silica gel column chromatography and Sephedex LH-20. The antioxidant activities of these extracts were measured by ferric reducing antioxidant power (FRAP), and the total phenolic contents of the extracts were evaluated using Folin-Ciocalteu reagent. Results The separation and purification processes were carried out using different chromatographic methods. Structural elucidation was on the basis 1H-NMR and 13C-NMR spectral data, in comparison with that reported in the literature. The isolated compounds were salvigenin (1), luteolin (2), cirsiliol (3), β-sitosterol (4), and daucosterol (5). Ethyl acetate extract displayed the highest level of total antioxidants and total polyphenols compared to the other analyzed extracts (n-hexane and methanol). In the FRAP assay, ethyl acetate extract had the highest (230.4±10.5) FRAP value, followed by methanol (211.4 ± 8.3) and n-hexane (143.4 ± 12.04). Total phenol contents were calculated to be 13.8 ± 0.3, 58.25 ± 0.05, and 43.48 ± 0.38 mg of gallic acid/100 g in the n-hexane, ethyl acetate, and methanol extracts, respectively. Conclusions The above-mentioned compounds were isolated for the first time from S. chloroleuca. The antioxidant activity of this plant could be in part related to isolated flavonoids and sterols. The results of this study

  13. SEPARATION OF p-AMINOBENZOIC ACID BY REACTIVE EXTRACTION. 1. MECHANISM AND INFLUENCING FACTORS

    Directory of Open Access Journals (Sweden)

    DAN CASCAVAL

    2008-09-01

    Full Text Available The comparative study on the reactive extraction of p-aminobenzoic acid with Amberlite LA-2 and D2EHPA in two solvents with different polarity (n-heptane and dichloromethane indicated that the extractant type and solvent polarity control the extraction mechanism. Thus, the reactive extraction with Amberlite LA-2 occurs by means of the interfacial formation of an aminic adduct with three extractant molecules in low-polar solvent, or of an salt with one extractant molecule in higher polar solvent. Similarly, the extraction with D2EHPA is based on the formation of an acidic adduct with two extractant molecules in n-heptane, or of a salt with one extractant molecule in dichloromethane. The most efficient extraction has been reached for the combination Amberlite LA-2-dichloromethane.

  14. Extraction, purification, methylation and GC-MS analysis of short-chain carboxylic acids for metabolic flux analysis.

    Science.gov (United States)

    Tivendale, Nathan D; Jewett, Erin M; Hegeman, Adrian D; Cohen, Jerry D

    2016-08-15

    Dynamic metabolic flux analysis requires efficient and effective methods for extraction, purification and analysis of a plethora of naturally-occurring compounds. One area of metabolism that would be highly informative to study using metabolic flux analysis is the tricarboxylic acid (TCA) cycle, which consists of short-chain carboxylic acids. Here, we describe a newly-developed method for extraction, purification, derivatization and analysis of short-chain carboxylic acids involved in the TCA cycle. The method consists of snap-freezing the plant material, followed by maceration and a 12-15h extraction at -80 °C. The extracts are then subject to reduction (to stabilize β-keto acids), purified by strong anion exchange solid phase extraction and methylated with methanolic HCl. This method could also be readily adapted to quantify many other short-chain carboxylic acids.

  15. Attitude Exploration Using Factor Analysis Technique

    Directory of Open Access Journals (Sweden)

    Monika Raghuvanshi

    2016-12-01

    Full Text Available Attitude is a psychological variable that contains positive or negative evaluation about people or an environment. The growing generation possesses learning skills, so if positive attitude is inculcated at the right age, it might therefore become habitual. Students in the age group 14-20 years from the city of Bikaner, India, are the target population for this study. An inventory of 30Likert-type scale statements was prepared in order to measure attitude towards the environment and matters related to conservation. The primary data is collected though a structured questionnaire, using cluster sampling technique and analyzed using the IBM SPSS 23 statistical tool. Factor analysis is used to reduce 30 variables to a smaller number of more identifiable groups of variables. Results show that students “need more regulation and voluntary participation to protect the environment”, “need conservation of water and electricity”, “are concerned for undue wastage of water”, “need visible actions to protect the environment”, “need strengthening of the public transport system”, “are a little bit ignorant about the consequences of global warming”, “want prevention of water pollution by industries”, “need changing of personal habits to protect the environment”, and “don’t have firsthand experience of global warming”. Analysis revealed that nine factors obtained could explain about 58.5% variance in the attitude of secondary school students towards the environment in the city of Bikaner, India. The remaining 39.6% variance is attributed to other elements not explained by this analysis. A global campaign for improvement in attitude about environmental issues and its utility in daily lives may boost positive youth attitudes, potentially impacting worldwide. A cross-disciplinary approach may be developed by teaching along with other related disciplines such as science, economics, and social studies etc.

  16. Factorized molecular wave functions: Analysis of the nuclear factor

    Energy Technology Data Exchange (ETDEWEB)

    Lefebvre, R., E-mail: roland.lefebvre@u-psud.fr [Institut des Sciences Moléculaires d’ Orsay, Bâtiment 350, UMR8214, CNRS- Université. Paris-Sud, 91405 Orsay, France and Sorbonne Universités, UPMC Univ Paris 06, UFR925, F-75005 Paris (France)

    2015-06-07

    The exact factorization of molecular wave functions leads to nuclear factors which should be nodeless functions. We reconsider the case of vibrational perturbations in a diatomic species, a situation usually treated by combining Born-Oppenheimer products. It was shown [R. Lefebvre, J. Chem. Phys. 142, 074106 (2015)] that it is possible to derive, from the solutions of coupled equations, the form of the factorized function. By increasing artificially the interstate coupling in the usual approach, the adiabatic regime can be reached, whereby the wave function can be reduced to a single product. The nuclear factor of this product is determined by the lowest of the two potentials obtained by diagonalization of the potential matrix. By comparison with the nuclear wave function of the factorized scheme, it is shown that by a simple rectification, an agreement is obtained between the modified nodeless function and that of the adiabatic scheme.

  17. Flavonoids content in extracts secang (Caesalpinia Sappan L. maceration method infundation analysis and visible ultraviolet spectrophotometer

    Directory of Open Access Journals (Sweden)

    Youstiana Dwi Rusita

    2016-04-01

    Full Text Available Secang (Caesalpinia sappan L has a component of a chemical compound essential oils, flavonoids, benzopyran, sapanin, brazilin, caesalpin S, caesalpin P, sapanon A, sapanon B. Flavonoids are chemical components that can be used in medical and industrial fields. This study aimed to determine the levels of flavonoids contained in extracts secang results maceration and extraction methods infundation. This study used quantitative and descriptive research design. This study using purposive sampling with two sample of Caesalpinia sappan L extract result of infundation and maceration. Analysis using univariate analysis. This study shows that there are types of flavonoids flavones, flavonols and flavanols on extracts of Caesalpinia sappan L results maceration method, and there are flavonoid types of flavones, flavonols and flavanols on extracts of Caesalpinia sappan L results infundation method. Flavonoid content test results showed that the levels of flavonoids in extracts of Caesalpinia sappan L results maceration 0.0539% whereas the levels of flavonoids in the extract of Caesalpinia sappan L results infundation methods 0.1902%. Necessary standardization of botanicals Caesalpinia sappan L to determine the levels of flavonoids using ultraviolet visible spectrophotometer, and the analysis of the levels of flavonoids in the extract of Caesalpinia sappan L using different solvents. As a follow-up is necessary to design the manufacture of dosage formulations of the active ingredient flavanoid compounds from the extract of Caesalpinia sappan L.

  18. Normal science and its tools: Reviewing the effects of exploratory factor analysis in management

    Directory of Open Access Journals (Sweden)

    Luciano Rossoni

    2016-06-01

    Full Text Available ABSTRACT The aim of this study is to investigate how different methods of extraction, factor definition, and rotation of exploratory factor analysis affect the fit of measurement scales. For this purpose, we undertook a meta-analysis of 23 studies. Our results indicate that the Principal Components method provides greater explained variance, while the Maximum Likelihood method increases reliability. Of the rotations methods, Varimax provides greater reliability while Quartimax provides lower correlation between factors. In conclusion, this study highlights implications for quantitative research and suggests potential new studies.

  19. Protective efficacy of Solanum xanthocarpum root extracts against free radical damage: phytochemical analysis and antioxidant effect.

    Science.gov (United States)

    Kumar, S; Sharma, U K; Sharma, A K; Pandey, A K

    2012-12-22

    Free radicals have been implicated in many diseases. They attack biological macromolecules in healthy human cells and cause protein and DNA damage along with lipid peroxidation. Present study reports the phytochemical analysis as well as free radical scavenging and antioxidant activities of Solanum xanthocarpum root extracts. Tannins, flavonoids, terpenoids, alkaloids, saponins and steroids were present in different extracts. Total flavonoid content in extracts was quantified and maximum contents were found in ethyl acetate fraction followed by chloroform and ethyl alcohol fractions, respectively. Dose dependent response was observed in metal ion chelating activity of extracts. Comparatively better chelating activity was found in polar extracts. Most of the extracts exhibited significant free radical scavenging activity in DPPH radical scavenging assay. Ethanolic and aqueous extracts accounted for about 40—50% lipid peroxidation inhibition (LPOI) in rat liver homogenate. Antioxidant activity did not show direct correlation with the amount of flavonoid contents in the extracts. However, direct correlation was observed between DPPH free radical scavenging activity and LPOI. Antioxidant activity of the extracts was compared with standard antioxidants. The differential activity observed in extracts could be attributed to the presence of other phytochemicals such as tannins and terpenoids in addition to flavonoids. The study demonstrated appreciable protective efficacy in S. xanthocarpum root extracts against free radical damage.

  20. Correspondence factor analysis of steroid libraries.

    Science.gov (United States)

    Ojasoo, T; Raynaud, J P; Doré, J C

    1995-06-01

    The receptor binding of a library of 187 steroids to five steroid hormone receptors (estrogen, progestin, androgen, mineralocorticoid, and glucocorticoid) has been analyzed by correspondence factor analysis (CFA) in order to illustrate how the method could be used to derive structure-activity-relationships from much larger libraries. CFA is a cartographic multivariate technique that provides objective distribution maps of the data after reduction and filtering of redundant information and noise. The key to the analysis of very complex data tables is the formation of barycenters (steroids with one or more common structural fragments) that can be introduced into CFA analyses used as mathematical models. This is possible in CFA because the method uses X2-metrics and is based on the distributional equivalence of the rows and columns of the transformed data matrix. We have thus demonstrated, in purely objective statistical terms, the general conclusions on the specificity of various functional and other groups derived from prior analyses by expert intuition and reasoning. A finer analysis was made of a series of A-ring phenols showing the high degree of glucocorticoid receptor and progesterone receptor binding that can be generated by certain C-11-substitutions despite the presence of the phenolic A-ring characteristic of estrogen receptor-specific binding.

  1. Acetonitrile extraction and dual-layer solid phase extraction clean-up for pesticide residue analysis in propolis.

    Science.gov (United States)

    Oellig, Claudia

    2016-05-06

    Propolis is a very complex mixture of substances that is produced by honey bees and is known to be a rather challenging matrix for residue analysis. Besides resins, flavonoids and phenols, high amount of wax is co-extracted resulting in immense matrix effects. Therefore a suitable clean-up is crucial and indispensable. In this study, a reliable solid phase extraction (SPE) clean-up was developed for pesticide residue analysis in propolis. The clean-up success was quickly and easily monitored by high-performance thin-layer chromatography with different detection possibilities. The final method consists of the extraction of propolis with acetonitrile according to the QuEChERS method followed by an effective extract purification on dual-layer SPE cartridges with spherical hydrophobic polystyrene-divinylbenzene resin/primary secondary amine as sorbent and a mixture of toluene/acetone (95:5, v/v) for elution. Besides fat-soluble components like waxes, flavonoids, and terpenoids, more polar compounds like organic acids, fatty acids, sugars and anthocyanins were also removed to large extent. Method performance was assessed by recovery experiments at spiking levels of 0.5 and 1mg/kg (n=5) for fourteen pesticides that are relevant for propolis. Mean recoveries determined by HPLC-MS against solvent standards were between 40 and 101%, while calculation against matrix-matched standards provided recoveries of 79-104%. Precision of recovery, assessed by relative standard deviations, were below 9%. Thus, the developed dual-layer SPE clean-up enables the reliable pesticide residue analysis in propolis and provides a suitable alternative to time-consuming clean-up procedures proposed in literature.

  2. Local kernel nonparametric discriminant analysis for adaptive extraction of complex structures

    Science.gov (United States)

    Li, Quanbao; Wei, Fajie; Zhou, Shenghan

    2017-05-01

    The linear discriminant analysis (LDA) is one of popular means for linear feature extraction. It usually performs well when the global data structure is consistent with the local data structure. Other frequently-used approaches of feature extraction usually require linear, independence, or large sample condition. However, in real world applications, these assumptions are not always satisfied or cannot be tested. In this paper, we introduce an adaptive method, local kernel nonparametric discriminant analysis (LKNDA), which integrates conventional discriminant analysis with nonparametric statistics. LKNDA is adept in identifying both complex nonlinear structures and the ad hoc rule. Six simulation cases demonstrate that LKNDA have both parametric and nonparametric algorithm advantages and higher classification accuracy. Quartic unilateral kernel function may provide better robustness of prediction than other functions. LKNDA gives an alternative solution for discriminant cases of complex nonlinear feature extraction or unknown feature extraction. At last, the application of LKNDA in the complex feature extraction of financial market activities is proposed.

  3. Evaluation of sample extraction methods for proteomics analysis of green algae Chlorella vulgaris.

    Science.gov (United States)

    Gao, Yan; Lim, Teck Kwang; Lin, Qingsong; Li, Sam Fong Yau

    2016-05-01

    Many protein extraction methods have been developed for plant proteome analysis but information is limited on the optimal protein extraction method from algae species. This study evaluated four protein extraction methods, i.e. direct lysis buffer method, TCA-acetone method, phenol method, and phenol/TCA-acetone method, using green algae Chlorella vulgaris for proteome analysis. The data presented showed that phenol/TCA-acetone method was superior to the other three tested methods with regards to shotgun proteomics. Proteins identified using shotgun proteomics were validated using sequential window acquisition of all theoretical fragment-ion spectra (SWATH) technique. Additionally, SWATH provides protein quantitation information from different methods and protein abundance using different protein extraction methods was evaluated. These results highlight the importance of green algae protein extraction method for subsequent MS analysis and identification.

  4. Analysis of polybrominated diphenyl ethers in atmospheric deposition and snow samples by solid-phase disk extraction.

    Science.gov (United States)

    Quiroz, Roberto; Arellano, Lourdes; Grimalt, Joan O; Fernández, Pilar

    2008-05-23

    An extraction method for the quantitative analysis of polybrominated diphenyl ethers (PBDEs) in aqueous samples has been evaluated. The analytical methodology includes the sample filtration through glass fiber filter and subsequent extraction of dissolved phase compounds by C18 solid-phase disk extraction. Dependence of extraction efficiency on factors such as pollutant concentrations, sample volume, and stability during storage has been investigated. Mean extraction efficiencies of 97% for total PBDEs (13 tri- to heptabrominated congeners at spiking levels in the range of 15-90pg) with a RSD between 9 and 20% were achieved. Higher recoveries were observed for the more volatile PBDEs (112%) in relation to more brominated congeners (88%). The developed methodology was successfully applied to the analysis of these compounds in atmospheric deposition and snow samples from remote sites in Europe with method detection and quantitation limits in the range of 2.1-10pgL(-1) for almost all congeners, which allow the determination of PBDEs in remote areas with levels in the range of low to medium pgL(-1) for SigmaPBDEs.

  5. Characterization of the most aroma-active compounds in cherry tomato by application of the aroma extract dilution analysis.

    Science.gov (United States)

    Selli, Serkan; Kelebek, Hasim; Ayseli, Mehmet Turan; Tokbas, Habip

    2014-12-15

    Aroma and aroma-active compounds of cherry tomato (Lycopersicum esculentum) was analyzed by gas chromatography-mass spectrometry-olfactometry (GC-MS-O). According to sensory analysis, the aromatic extract obtained by liquid-liquid extraction was representative of tomato odour. A total of 49 aroma compounds were identified and quantified in fresh cherry tomato. Aldehydes were qualitatively and quantitatively the most dominant volatiles in cherry tomato, followed by alcohols. Aroma extract dilution analysis (AEDA) was used for the determination of aroma-active compounds of tomato sample. A total of 21 aroma-active compounds were detected in aromatic extract of fresh tomato, of which 18 were identified. On the basis of the flavour dilution (FD) factor, the most powerful aroma-active compounds identified in the extract were (Z)-3-hexenal (FD=1024) and (E)-2-hexenal (FD=256), which were described as the strong green-grassy and green-leafy odour, respectively. The major organic acid and sugar found were citric acid and fructose, respectively.

  6. Analysis of citrates and benzoates used in poly(vinyl chloride) by supercritical fluid extraction and gas chromatography.

    Science.gov (United States)

    Guerra, R M; Marín, M L; Sánchez, A; Jiménez, A

    2002-03-15

    Supercritical fluid extraction (SFE) has been demonstrated to be a useful tool in the determination of additives in polymeric materials. This paper describes the determination of some citrates and benzoates in poly(vinyl chloride) blended with 33-34% of plasticizer using off-line SFE followed by gas chromatography. Experimental factors affecting SFE have been studied by gravimetric analysis, followed by analysis of the extracts using a gas chromatograph equipped with a flame ionization detector. The extraction process is governed by the solubility of the plasticizers in the supercritical fluid or by their diffusion through the polymer matrix, which depend on the pressure and temperature used. Maximum extraction (>99%) is obtained at pressures and temperatures higher than 40 MPa and 80 degrees C, respectively. Due to purge losses, the collection efficiency of plasticizers into a liquid solvent ranges from 85 to 90%. The applicability of the SFE method is demonstrated using real samples and comparing the results with those obtained by conventional Soxhlet extraction.

  7. User-oriented summary extraction for soccer video based on multimodal analysis

    Science.gov (United States)

    Liu, Huayong; Jiang, Shanshan; He, Tingting

    2011-11-01

    An advanced user-oriented summary extraction method for soccer video is proposed in this work. Firstly, an algorithm of user-oriented summary extraction for soccer video is introduced. A novel approach that integrates multimodal analysis, such as extraction and analysis of the stadium features, moving object features, audio features and text features is introduced. By these features the semantic of the soccer video and the highlight mode are obtained. Then we can find the highlight position and put them together by highlight degrees to obtain the video summary. The experimental results for sports video of world cup soccer games indicate that multimodal analysis is effective for soccer video browsing and retrieval.

  8. Factor analysis of the interrelationships between clinical variables in horses with colic.

    Science.gov (United States)

    Thoefner, M B; Ersbøll, A K; Jensen, A L; Hesselholt, M

    2001-02-16

    A prospective survey of horses with colic referred to the Large Animal Hospital at the Royal Veterinary and Agricultural University of Copenhagen, Denmark, was undertaken between August 1994 and December 1997. The interrelationships between 17 clinical variables were analysed using factor analysis. Factor analysis uncovers the structure of the variability in data and therefore detects multicollinearity. A total of 528 horses were admitted in the study period. Of these, 16 were excluded from the analysis as a result of miscellaneous conditions. Only 205 horses had observations for all 17 variables. Because no major change occurred in the main diagnostic categories, this population was considered as a representative subset. Factor analysis confirmed the clinical impression of correlation between variables, but the multicollinearity turned out not to be strong. Four factors were extracted, and these accounted for 51% of the total variance. The retained factors were interpreted by integrating previously reported clinical research. The first factor, which was interpreted as endotoxaemia, had high loadings on capillary refill time, mucous-membrane colour, degree of pain, heart rate, packed-cell volume and abdominal sounds. In the second factor, cecal decompression, admission month and gastric reflux had the predominant influence, and this factor was explained as cecal tympany. The third factor was simply interpreted as age because it had high loadings on gender, age and temperature. In the fourth factor, the interpretation was not straightforward, although breed had the greatest influence in the formation of this factor. Subsequently, the extracted factors were used in a logistic-regression analysis to determine their association with outcome (survival/death). The two factors interpreted as endotoxaemia and age were related to the outcome.

  9. Factor analysis and multiple regression between topography and precipitation on Jeju Island, Korea

    Science.gov (United States)

    Um, Myoung-Jin; Yun, Hyeseon; Jeong, Chang-Sam; Heo, Jun-Haeng

    2011-11-01

    SummaryIn this study, new factors that influence precipitation were extracted from geographic variables using factor analysis, which allow for an accurate estimation of orographic precipitation. Correlation analysis was also used to examine the relationship between nine topographic variables from digital elevation models (DEMs) and the precipitation in Jeju Island. In addition, a spatial analysis was performed in order to verify the validity of the regression model. From the results of the correlation analysis, it was found that all of the topographic variables had a positive correlation with the precipitation. The relations between the variables also changed in accordance with a change in the precipitation duration. However, upon examining the correlation matrix, no significant relationship between the latitude and the aspect was found. According to the factor analysis, eight topographic variables (latitude being the exception) were found to have a direct influence on the precipitation. Three factors were then extracted from the eight topographic variables. By directly comparing the multiple regression model with the factors (model 1) to the multiple regression model with the topographic variables (model 3), it was found that model 1 did not violate the limits of statistical significance and multicollinearity. As such, model 1 was considered to be appropriate for estimating the precipitation when taking into account the topography. In the study of model 1, the multiple regression model using factor analysis was found to be the best method for estimating the orographic precipitation on Jeju Island.

  10. Implementing groundwater extraction in life cycle impact assessment: characterization factors based on plant species richness for The Netherlands.

    Science.gov (United States)

    van Zelm, Rosalie; Schipper, Aafke M; Rombouts, Michiel; Snepvangers, Judith; Huijbregts, Mark A J

    2011-01-15

    An operational method to evaluate the environmental impacts associated with groundwater use is currently lacking in life cycle assessment (LCA). This paper outlines a method to calculate characterization factors that address the effects of groundwater extraction on the species richness of terrestrial vegetation. Characterization factors (CF) were derived for The Netherlands and consist of a fate and an effect part. The fate factor equals the change in drawdown due to a change in groundwater extraction and expresses the amount of time required for groundwater replenishment. It was obtained with a grid-specific steady-state groundwater flow model. Effect factors were obtained from groundwater level response curves of potential plant species richness, which was constructed based on the soil moisture requirements of 625 plant species. Depending on the initial groundwater level, effect factors range up to 9.2% loss of species per 10 cm of groundwater level decrease. The total Dutch CF for groundwater extraction depended on the value choices taken and ranged from 0.09 to 0.61 m(2)·yr/m(3). For tap water production, we showed that groundwater extraction can be responsible for up to 32% of the total terrestrial ecosystem damage. With the proposed approach, effects of groundwater extraction on terrestrial ecosystems can be systematically included in LCA.

  11. Methodology of data extraction from a corpus for the conceptual analysis of metaphor in legal English

    OpenAIRE

    Kucheruk, Liliya

    2014-01-01

    The present paper entitled “Methodology of data extraction from a corpus for the conceptual analysis of metaphor in legal English” investigates the main approaches to the study of metaphor in legal language from the point of view of cognitive linguistics. It also offers the most widely spread methods of data extraction form a corpus.

  12. DEVELOPMENT OF TECHNOLOGY AND ANALYSIS METHODS OF COSMETICS WITH WATER EXTRACTS FROM HERBAL DRUGS RAW MATERIALS

    Directory of Open Access Journals (Sweden)

    A. A. Chakhirova

    2014-01-01

    Full Text Available The article presents studies on development of cosmetics with complex extracts from herb of Bidens, flowers of Calendula, and flowers of Matricaria. We cited the analysis methods of the received extract and a drug on its base

  13. Analysis of heavy metals and fluoride in vegetation by extraction with concentrated mineral acids.

    Science.gov (United States)

    Johnson, M S

    1975-01-01

    A rapid potentiometric method for determining fluoride in vegetation is described. Recovery of flouride by extraction with concentrated mineral acids compares favourably with standard methods of analysis in terms of accuracy and precision. The procedure affords the additional advantage that several citations are also quantitatively extracted and may be determined directly in the acid digest by atomic absorption spectrophotometry.

  14. Extraction and determination of molybdenum with tributyl phosphate Application to analysis of copper-molybdenum ores.

    Science.gov (United States)

    Caiozzi, M; Zunino, H; Sepúlveda, L

    1969-12-01

    A differential spectrophotometric method is described for the determination of molybdenum by means of solvent extraction with tributylphosphate of the peroxymolybdate complex formed with H(2)O(2) in 3.5N H(2)SO(4). The extraction parameters are studied, and the behaviour of some other ions is reported. The method is used for ore analysis.

  15. Factorial invariance in multilevel confirmatory factor analysis.

    Science.gov (United States)

    Ryu, Ehri

    2014-02-01

    This paper presents a procedure to test factorial invariance in multilevel confirmatory factor analysis. When the group membership is at level 2, multilevel factorial invariance can be tested by a simple extension of the standard procedure. However level-1 group membership raises problems which cannot be appropriately handled by the standard procedure, because the dependency between members of different level-1 groups is not appropriately taken into account. The procedure presented in this article provides a solution to this problem. This paper also shows Muthén's maximum likelihood (MUML) estimation for testing multilevel factorial invariance across level-1 groups as a viable alternative to maximum likelihood estimation. Testing multilevel factorial invariance across level-2 groups and testing multilevel factorial invariance across level-1 groups are illustrated using empirical examples. SAS macro and Mplus syntax are provided.

  16. Physiological Factors Analysis in Unpressurized Aircraft Cabins

    Science.gov (United States)

    Patrao, Luis; Zorro, Sara; Silva, Jorge

    2016-11-01

    Amateur and sports flight is an activity with growing numbers worldwide. However, the main cause of flight incidents and accidents is increasingly pilot error, for a number of reasons. Fatigue, sleep issues and hypoxia, among many others, are some that can be avoided, or, at least, mitigated. This article describes the analysis of psychological and physiological parameters during flight in unpressurized aircraft cabins. It relates cerebral oximetry and heart rate with altitude, as well as with flight phase. The study of those parameters might give clues on which variations represent a warning sign to the pilot, thus preventing incidents and accidents due to human factors. Results show that both cerebral oximetry and heart rate change along the flight and altitude in the alert pilot. The impaired pilot might not reveal these variations and, if this is detected, he can be warned in time.

  17. Comparison of DNA extraction methods for meat analysis.

    Science.gov (United States)

    Yalçınkaya, Burhanettin; Yumbul, Eylem; Mozioğlu, Erkan; Akgoz, Muslum

    2017-04-15

    Preventing adulteration of meat and meat products with less desirable or objectionable meat species is important not only for economical, religious and health reasons, but also, it is important for fair trade practices, therefore, several methods for identification of meat and meat products have been developed. In the present study, ten different DNA extraction methods, including Tris-EDTA Method, a modified Cetyltrimethylammonium Bromide (CTAB) Method, Alkaline Method, Urea Method, Salt Method, Guanidinium Isothiocyanate (GuSCN) Method, Wizard Method, Qiagen Method, Zymogen Method and Genespin Method were examined to determine their relative effectiveness for extracting DNA from meat samples. The results show that the salt method is easy to perform, inexpensive and environmentally friendly. Additionally, it has the highest yield among all the isolation methods tested. We suggest this method as an alternative method for DNA isolation from meat and meat products. Copyright © 2016 Elsevier Ltd. All rights reserved.

  18. Microprobe analysis of brine shrimp grown on meteorite extracts

    Energy Technology Data Exchange (ETDEWEB)

    Kennedy, J. [National Isotope Centre, GNS Science, 30 Gracefield Road, Lower Hutt (New Zealand)]. E-mail: j.kennedy@gns.cri.nz; Mautner, M.N. [Soil, Plant and Ecological Sciences Division, Lincoln University (New Zealand) and Department of Chemistry, University of Canterbury, Christchurch 8001 (New Zealand)]. E-mail: m.mautner@solis1.com; Barry, B. [National Isotope Centre, GNS Science, 30 Gracefield Road, Lower Hutt (New Zealand); Markwitz, A. [National Isotope Centre, GNS Science, 30 Gracefield Road, Lower Hutt (New Zealand)

    2007-07-15

    Nuclear microprobe methods have been used to investigate the uptake and distribution of various elements by brine shrimps and their unhatched eggs when grown in extracts of the Murchison and Allende carbonaceous meteorites, which were selected as model space resources. Measurements were carried out using a focussed 2 MeV proton beam raster scanned over the samples in order to obtain the average elemental concentrations. Line scans across the egg and shrimp samples show uptake of elements such as Mg, Ni, S and P which are present in the meteorites. The results confirmed that carbonaceous chondrite materials can provide nutrients, including high levels of the essential nutrient phosphate. The concentrations of these elements varied significantly between shrimp and eggs grown in extracts of the two meteorite types, which can help in identifying optimal growth media. Our results illustrate that nuclear microprobe techniques can determine elemental concentrations in organisms exposed to meteorite derived media and thus help in identifying useful future resources.

  19. Model analysis of mechanisms controlling pneumatic soil vapor extraction

    DEFF Research Database (Denmark)

    Høier, Camilla Kruse; Sonnenborg, Torben Obel; Jensen, Karsten Høgh;

    2009-01-01

    The efficiency of traditional soil venting or soil vapor extraction (SVE) highly depends on the architecture of the subsurface because imposed advective air flow tends to bypass low-permeable contaminated areas. Pneumatic SVE is a technique developed to enhance remediation efficiency of heterogen...... level the pneumatic venting technology is superior to the traditional technique, and that the method is particularly efficient in cases where large permeability contrasts exist between soil units in the subsurface.......The efficiency of traditional soil venting or soil vapor extraction (SVE) highly depends on the architecture of the subsurface because imposed advective air flow tends to bypass low-permeable contaminated areas. Pneumatic SVE is a technique developed to enhance remediation efficiency...... of heterogeneous soils by enforcing large fluctuating pressure fronts through the contaminated area. Laboratory experiments have suggested that pneumatic SVE considerably improves the recovery rate from low-permeable units. We have analyzed the experimental results using a numerical code and quantified...

  20. Gas chromatography-mass spectroscopy analysis of bioactive petalostigma extracts: Toxicity, antibacterial and antiviral activities

    Directory of Open Access Journals (Sweden)

    F R Kalt

    2014-01-01

    Full Text Available Background: Petalostigma pubescens and Petalostigma triloculare were common components of pharmacopeia′s of multiple Australian Aboriginal tribal groupings which traditionally inhabited the areas in which they grow. Among these groups, they had a myriad of medicinal uses in treating a wide variety of bacterial, fungal and viral infections. This study was undertaken to test P. pubescens and P. triloculare leaf and fruit extracts for the ability to inhibit bacterial and viral growth and thus validate Australian Aboriginal usage of these plants in treating bacterial and fungal diseases. Materials and Methods: P. pubescens, and P. triloculare leaves and fruit were extracted and tested for antimicrobial, antiviral activity and toxicity. The bioactive extracts were further examined by RP-HPLC and GC-MS to identify the component compounds. Results: The methanol, water and ethyl acetate leaf and fruit extracts of displayed potent antibacterial activity. The methanol and ethyl acetate extracts displayed the broadest specificity, inhibiting the growth of 10 of the 14 bacteria tested (71% for the leaf extract and 9 of the 14 bacteria tested (64% for the fruit extracts. The water extracts also had broad spectrum antibacterial activity, inhibiting the growth of 8 (57% and 7 (50% of the 14 bacteria tested, respectively. All antibacterial extracts were approximately equally effective against Gram-positive and Gram-negative bacteria, inhibiting the growth of 50-75% of the bacteria tested. The methanol, water and ethyl acetate extracts also displayed antiviral activity in the MS2 plaque reduction assay. The methanol and water extracts inhibited 26.6-49.0% and 85.4-97.2% of MS2 plaque formation, respectively, with the fruit extracts being more potent inhibitors. All ethyl acetate extracts inhibited 100% of MS2 plaque formation. All extracts were also non-toxic or of low toxicity. Analysis of these extracts by RP-HPLC showed that the P. triloculare ethyl acetate

  1. Cluster Analysis of Customer Reviews Extracted from Web Pages

    Directory of Open Access Journals (Sweden)

    S. Shivashankar

    2010-01-01

    Full Text Available As e-commerce is gaining popularity day by day, the web has become an excellent source for gathering customer reviews / opinions by the market researchers. The number of customer reviews that a product receives is growing at very fast rate (It could be in hundreds or thousands. Customer reviews posted on the websites vary greatly in quality. The potential customer has to read necessarily all the reviews irrespective of their quality to make a decision on whether to purchase the product or not. In this paper, we make an attempt to assess are view based on its quality, to help the customer make a proper buying decision. The quality of customer review is assessed as most significant, more significant, significant and insignificant.A novel and effective web mining technique is proposed for assessing a customer review of a particular product based on the feature clustering techniques, namely, k-means method and fuzzy c-means method. This is performed in three steps : (1Identify review regions and extract reviews from it, (2 Extract and cluster the features of reviews by a clustering technique and then assign weights to the features belonging to each of the clusters (groups and (3 Assess the review by considering the feature weights and group belongingness. The k-means and fuzzy c-means clustering techniques are implemented and tested on customer reviews extracted from web pages. Performance of these techniques are analyzed.

  2. EXTRACTION AND ANALYSIS OF CONDENSED TANNINS IN CASTANEA SATIVA MILL.

    Directory of Open Access Journals (Sweden)

    J Živković

    2010-02-01

    Full Text Available Proanthocyanidins, also known as condensed tannins are widespread in woody plants, but are also found in certain forages. Castanea sativa Mill. are exploited for various purposes, but a little is known about potential of this species and possible application in diet and therapy. The parts of chestnut such as: seed, peeled seed, brown seed shell, red internal seed shell, leaves, catkin, spiny bur, as well as the new and old chestnut bark were extracted with 50% ethanol as an extragents. Contents of total phenolics and total flavonoids were measured by application of the standard colorimetric assay. The total condensed tannins content estimated was highest in red internal seed shell 15.29%CE (vanillin assay and 3.12%CT (acid butanol assay. Also high content of total phenolic compounds and condensed tannins had extracts of catkin, brown seed shell of chestnut and new chestnut bark. Extracts of C. sativa Mill. can be a potential resource of natural tannins with possible application in diet and therapy.

  3. Analysis of entropy extraction efficiencies in random number generation systems

    Science.gov (United States)

    Wang, Chao; Wang, Shuang; Chen, Wei; Yin, Zhen-Qiang; Han, Zheng-Fu

    2016-05-01

    Random numbers (RNs) have applications in many areas: lottery games, gambling, computer simulation, and, most importantly, cryptography [N. Gisin et al., Rev. Mod. Phys. 74 (2002) 145]. In cryptography theory, the theoretical security of the system calls for high quality RNs. Therefore, developing methods for producing unpredictable RNs with adequate speed is an attractive topic. Early on, despite the lack of theoretical support, pseudo RNs generated by algorithmic methods performed well and satisfied reasonable statistical requirements. However, as implemented, those pseudorandom sequences were completely determined by mathematical formulas and initial seeds, which cannot introduce extra entropy or information. In these cases, “random” bits are generated that are not at all random. Physical random number generators (RNGs), which, in contrast to algorithmic methods, are based on unpredictable physical random phenomena, have attracted considerable research interest. However, the way that we extract random bits from those physical entropy sources has a large influence on the efficiency and performance of the system. In this manuscript, we will review and discuss several randomness extraction schemes that are based on radiation or photon arrival times. We analyze the robustness, post-processing requirements and, in particular, the extraction efficiency of those methods to aid in the construction of efficient, compact and robust physical RNG systems.

  4. Practical Considerations for Using Exploratory Factor Analysis in Educational Research

    Science.gov (United States)

    Beavers, Amy S.; Lounsbury, John W.; Richards, Jennifer K.; Huck, Schuyler W.; Skolits, Gary J.; Esquivel, Shelley L.

    2013-01-01

    The uses and methodology of factor analysis are widely debated and discussed, especially the issues of rotational use, methods of confirmatory factor analysis, and adequate sample size. The variety of perspectives and often conflicting opinions can lead to confusion among researchers about best practices for using factor analysis. The focus of the…

  5. Factors influencing sperm retrieval following testicular sperm extraction in nonobstructive azoospermia patients.

    Science.gov (United States)

    Salehi, Peyman; Derakhshan-Horeh, Marzieh; Nadeali, Zakiye; Hosseinzadeh, Majid; Sadeghi, Erfan; Izadpanahi, Mohammad Hossein; Salehi, Mansour

    2017-03-01

    Azoospermia owing to testicular disorders is the most severe manifestation of male infertility. The main concern for patients with nonobstructive azoospermia (NOA) is the probability of successful sperm retrieval following testicular sperm extraction (TESE). Therefore, the goal of this study was to determine predictive factors correlated with sperm retrieval. We assessed the testicular histopathological patterns, the choice of TESE surgical procedure, hormone levels, and chromosomal abnormalities in patients with NOA (n=170). The histopathology specimens were analyzed based on the histopathological patterns of hypospermatogenesis, maturation arrest, and Sertoli cell-only syndrome. The mean rate of sperm retrieval was 48.8%. The rate of sperm retrieval was significantly higher in the hypospermatogenesis group than in the other groups (p<0.001). There was a positive correlation between micro-TESE (vs. conventional TESE) and the sperm retrieval rate (odds ratio, 8.077; p<0.01). A logistic regression model demonstrated that high levels of follicle-stimulating hormone (FSH) and small testicular volume were significantly associated with lower chances of successful sperm retrieval. Some parameters, including testicular histopathology patterns, FSH levels, testicular volume, and method of TESE surgery, may be able to predict the chances of obtaining spermatozoa in patients with NOA. However, despite the efficiency of some predictive models, the hope of retrieving any functioning spermatozoa may be sufficient to disregard predictive factors of the success of intracytoplasmic sperm injection in these patients.

  6. Factors Influencing Oral Bioavailability of Thai Mango Seed Kernel Extract and Its Key Phenolic Principles.

    Science.gov (United States)

    Jiamboonsri, Pimsumon; Pithayanukul, Pimolpan; Bavovada, Rapepol; Leanpolchareanchai, Jiraporn; Yin, Taijun; Gao, Song; Hu, Ming

    2015-11-30

    Mango seed kernel extract (MSKE) and its key components (gallic acid, GA; methyl gallate, MG; and pentagalloyl glucopyranose, PGG) have generated interest because of their pharmacological activities. To develop the potential use of the key components in MSKE as natural therapeutic agents, their pharmacokinetic data are necessary. Therefore, this study was performed to evaluate the factors affecting their oral bioavailability as pure compounds and as components in MSKE. The in vitro chemical stability, biological stability, and absorption were evaluated in Hanks' Balanced Salt Solution, Caco-2 cell and rat fecal lysates, and the Caco-2 cell model, respectively. The in vivo oral pharmacokinetic behavior was elucidated in Sprague-Dawley rats. The key components were unstable under alkaline conditions and in Caco-2 cell lysates or rat fecal lysates. The absorptive permeability coefficient followed the order MG > GA > PGG. The in vivo results exhibited similar pharmacokinetic trends to the in vitro studies. Additionally, the co-components in MSKE may affect the pharmacokinetic behaviors of the key components in MSKE. In conclusion, chemical degradation under alkaline conditions, biological degradation by intestinal cell and colonic microflora enzymes, and low absorptive permeability could be important factors underlying the oral bioavailability of these polyphenols.

  7. Factors Influencing Oral Bioavailability of Thai Mango Seed Kernel Extract and Its Key Phenolic Principles

    Directory of Open Access Journals (Sweden)

    Pimsumon Jiamboonsri

    2015-11-01

    Full Text Available Mango seed kernel extract (MSKE and its key components (gallic acid, GA; methyl gallate, MG; and pentagalloyl glucopyranose, PGG have generated interest because of their pharmacological activities. To develop the potential use of the key components in MSKE as natural therapeutic agents, their pharmacokinetic data are necessary. Therefore, this study was performed to evaluate the factors affecting their oral bioavailability as pure compounds and as components in MSKE. The in vitro chemical stability, biological stability, and absorption were evaluated in Hanks’ Balanced Salt Solution, Caco-2 cell and rat fecal lysates, and the Caco-2 cell model, respectively. The in vivo oral pharmacokinetic behavior was elucidated in Sprague-Dawley rats. The key components were unstable under alkaline conditions and in Caco-2 cell lysates or rat fecal lysates. The absorptive permeability coefficient followed the order MG > GA > PGG. The in vivo results exhibited similar pharmacokinetic trends to the in vitro studies. Additionally, the co-components in MSKE may affect the pharmacokinetic behaviors of the key components in MSKE. In conclusion, chemical degradation under alkaline conditions, biological degradation by intestinal cell and colonic microflora enzymes, and low absorptive permeability could be important factors underlying the oral bioavailability of these polyphenols.

  8. The GC/MS Analysis of Volatile Components Extracted by Different Methods from Exocarpium Citri Grandis

    Directory of Open Access Journals (Sweden)

    Zhisheng Xie

    2013-01-01

    Full Text Available Volatile components from Exocarpium Citri Grandis (ECG were, respectively, extracted by three methods, that is, steam distillation (SD, headspace solid-phase microextraction (HS-SPME, and solvent extraction (SE. A total of 81 compounds were identified by gas chromatography-mass spectrometry including 77 (SD, 56 (HS-SPME, and 48 (SE compounds, respectively. Despite of the extraction method, terpenes (39.98~57.81% were the main volatile components of ECG, mainly germacrene-D, limonene, 2,6,8,10,14-hexadecapentaene, 2,6,11,15-tetramethyl-, (E,E,E-, and trans-caryophyllene. Comparison was made among the three methods in terms of extraction profile and property. SD relatively gave an entire profile of volatile in ECG by long-time extraction; SE enabled the analysis of low volatility and high molecular weight compounds but lost some volatiles components; HS-SPME generated satisfactory extraction efficiency and gave similar results to those of SD at analytical level when consuming less sample amount, shorter extraction time, and simpler procedure. Although SD and SE were treated as traditionally preparative extractive techniques for volatiles in both small batches and large scale, HS-SPME coupled with GC/MS could be useful and appropriative for the rapid extraction and qualitative analysis of volatile components from medicinal plants at analytical level.

  9. Comparison of different extraction solutions for the analysis of allergens in hen's egg.

    Science.gov (United States)

    Hildebrandt, S; Steinhart, H; Paschke, A

    2008-06-01

    An important requirement for the correct procedure of allergen analysis in hen's egg is to obtain complete and unaltered protein extracts. Besides the aim of a quantitative extraction of the allergens from the matrix, it is equally important not to alter their allergenic potential during the extraction process. This paper describes and compares six extraction solutions for the analysis of whole-egg proteins and allergens. These requirements were examined via protein determination according to Bradford [Bradford, M. M. (1976). Rapid and sensitive method for quantitation of microgram quantities of protein utilizing principle of protein-dye binding. Analytical Biochemistry, 72, 248-254] and Kjeldahl [Meyer, A. H. (2006). Lebensmittelrecht, Verlag C.H. Beck München, Stand: 1. February 2006, § 64, Lebensmittel- und Futtermittelgesetzbuch, Amtliche Sammlung von Untersuchungsmethoden, Nr. L 06.00-7] as well as the EAST-inhibition method. It could be demonstrated that the extraction with a urea solution (8M) led to significant interferences during the protein determination, and substantially reduced the allergenic potential of egg proteins. With all other extraction solutions adequate protein contents could be extracted. The highest protein content was achieved by the extraction with phosphate buffered saline followed by a Tween 20 solution, physiological saline, water, and acetate buffer. The results show that none of these extracts - except for the urea solution (8M) - was altered in its' allergenic potential.

  10. ANTIDIABETIC AND HISTOPATHOLOGICAL ANALYSIS OF FENUGREEK EXTRACT ON ALLOXAN INDUCED DIABETIC RATS

    Directory of Open Access Journals (Sweden)

    Parixit Bhandurge

    2010-03-01

    Full Text Available Fenugreek (Trigonella foenum-graecumL. Leguminosae is widely used in Indian Ayurvedic medicine for the treatment of diabetes mellitus. Antihyperglycaemic effect of the two different doses (200 and 400 mg/kg of the fenugreek extract was evaluated in this study. Blood glucose, liver profile, renal profile and total lipid levels were determined in alloxan induced diabetic rats after oral administration of a fenugreek extract. A comparable hypoglycemic effect was evidenced from the data obtained after 7 and 21 days of oral administration of the extract. The extract lowered the total cholesterol and serum triglycerides. Histopathological analysis of pancreas showed normal acini, and normal cellular in the islets of langerhans in the pancreas of normal control and Extensive damage to islets of langerhans and reduced dimensions of islets in alloxan induced diabetes. Restoration of islets of langerhans seen in diabetic rats treated with fenugreek extract. The results of this study clearly shows the hypoglycaemic activity of the extract

  11. Background Extraction Method Based on Block Histogram Analysis for Video Image

    Institute of Scientific and Technical Information of China (English)

    Li Hua; Peng Qiang

    2005-01-01

    A novel method of histogram analysis for background extraction in video image is proposed, which is derived from the pixelbased histogram analysis. Not only the statistical property of pixels between temporal frames, but also the correlation of local pixels in a single frame is exploited in this method. When carrying out histogram analysis for background extraction, the proposed method is not based on a single pixel but on a 2×2 block that has much less computational quantities and can extract a sound background image from video sequence simultaneously. A comparative experiment between the proposed method and the pixel-based histogram analysis shows that the proposed method has a faster speed in background extraction and the obtained background image is better in quantity.

  12. Application of supercritical fluid carbon dioxide to the extraction and analysis of lipids.

    Science.gov (United States)

    Lee, Jae Won; Fukusaki, Eiichiro; Bamba, Takeshi

    2012-10-01

    Supercritical carbon dioxide (SCCO(2)) is an ecofriendly supercritical fluid that is chemically inert, nontoxic, noninflammable and nonpolluting. As a green material, SCCO(2) has desirable properties such as high density, low viscosity and high diffusivity that make it suitable for use as a solvent in supercritical fluid extraction, an effective and environment-friendly analytical method, and as a mobile phase for supercritical fluid chromatography, which facilitates high-throughput, high-resolution analysis. Furthermore, the low polarity of SCCO(2) is suitable for the extraction and analysis of hydrophobic compounds. The growing concern surrounding environmental pollution has triggered the development of green analysis methods based on the use of SCCO(2) in various laboratories and industries. SCCO(2) is becoming an effective alternative to conventional organic solvents. In this review, the usefulness of SCCO(2) in supercritical fluid extraction and supercritical fluid chromatography for the extraction and analysis of lipids is described.

  13. Performance analysis of a hybrid fingerprint extracted from optical coherence tomography fingertip scans

    CSIR Research Space (South Africa)

    Darlow, Luke N

    2016-06-01

    Full Text Available International Conference on Biometrics (ICB), 13-16 June 2016, Halmstad, Sweden Performance analysis of a hybrid fingerprint extracted from optical coherence tomography fingertip scans Darlow LN Connan J Singh A ABSTRACT: The Hybrid fingerprint is a...

  14. Optimal Fixation Conditions and DNA Extraction Methods for MLPA Analysis on FFPE Tissue-Derived DNA.

    Science.gov (United States)

    Atanesyan, Lilit; Steenkamer, Maryvonne J; Horstman, Anja; Moelans, Cathy B; Schouten, Jan P; Savola, Suvi P

    2017-01-01

    Molecular genetic analysis of formalin-fixed, paraffin-embedded (FFPE) tissues is of great importance both for research and diagnostics. Multiplex ligation-dependent probe amplification (MLPA) is a widely used technique for gene copy number determination, and it has been successfully used for FFPE tissue-extracted DNA analysis. However, there have been no studies addressing the effect of tissue fixation procedures and DNA extraction methods on MLPA. This study therefore focuses on selecting optimal preanalytic conditions such as FFPE tissue preparation conditions and DNA extraction methods. Healthy tissues were fixed in buffered or nonbuffered formalin for 1 hour, 12 to 24 hours, or 48 to 60 hours at 4 °C or at room temperature. DNA extracted from differently fixed and subsequently paraffin-embedded tissues was used for MLPA. Four commercial DNA extraction kits and one in-house method were compared. Tissues fixed for 12 to 24 hours in buffered formalin at room temperature produced DNA with the most optimal quality for MLPA. The in-house FFPE DNA extraction method was shown to perform as efficient as or even superior to other methods in terms of suitability for MLPA, time and cost-efficiency, and ease of performance. FFPE-extracted DNA is well suitable for MLPA analysis, given that optimal tissue fixation and DNA extraction methods are chosen.

  15. Hexafluoroisopropanol-induced catanionic-surfactants-based coacervate extraction for analysis of lysozyme.

    Science.gov (United States)

    Xu, Jia; Niu, Manli; Xiao, Yuxiu

    2017-02-01

    A coacervate extraction method, based on hexafluoroisopropanol (HFIP)-induced catanionic surfactants and coupled with a back-extraction procedure, was developed for separation and purification of proteins, using sodium dodecyl sulfate (SDS) and dodecyltrimethyl ammonium bromide (DTAB) as representative catanionic surfactants and lysozyme as a model protein. After the coacervate extraction and back extraction, the obtained lysozyme solutions were examined in terms of quantitative analysis by capillary electrophoresis, bacteriolytic activity, and circular dichroism (CD). The effects of several parameters including back-extraction solvent, HFIP content, total surfactant concentration, and SDS/DTAB molar ratio were investigated in detail on the extraction efficiency and activity of lysozyme. Under the optimized extraction conditions (66 mM KH2PO4 buffer with pH 6.2 as back-extraction solvent, SDS/DTAB molar ratio = 1:1 mol/mol, total surfactant concentration = 30 mM, HIFP concentration = 8 % v/v), the extraction recovery was 89.8 % (±4.7, n = 3), limit of detection was 2.2 (±0.3, n = 3) μg mL(-1), and meanwhile nearly 65 % of native lysozyme activity was retained. In addition, the activity and CD assays showed that SDS/DTAB molar ratio had a significant influence on the activity and structure of lysozyme after extraction. The DTAB-rich extraction systems, in which the DTAB mole fraction was equal to or larger than 70 %, could keep the activity and structure of lysozyme almost in the native state. Graphical Abstract Procedure of HFIP-induced SDS/DTAB coacervate extraction and back extraction of lysozyme.

  16. Feature Extraction and Analysis of Breast Cancer Specimen

    Science.gov (United States)

    Bhattacharyya, Debnath; Robles, Rosslin John; Kim, Tai-Hoon; Bandyopadhyay, Samir Kumar

    In this paper, we propose a method to identify abnormal growth of cells in breast tissue and suggest further pathological test, if necessary. We compare normal breast tissue with malignant invasive breast tissue by a series of image processing steps. Normal ductal epithelial cells and ductal / lobular invasive carcinogenic cells also consider for comparison here in this paper. In fact, features of cancerous breast tissue (invasive) are extracted and analyses with normal breast tissue. We also suggest the breast cancer recognition technique through image processing and prevention by controlling p53 gene mutation to some greater extent.

  17. Vacuum Permeator Analysis for Extraction of Tritium from DCLL Blankets

    Energy Technology Data Exchange (ETDEWEB)

    Humrickhouse, Paul Weston [Idaho National Laboratory; Merrill, Brad Johnson [Idaho National Laboratory

    2014-11-01

    It is envisioned that tritium will be extracted from DCLL blankets using a vacuum permeator. We derive here an analytical solution for the extraction efficiency of a permeator tube, which is a function of only two dimensionless numbers: one that indicates whether radial transport is limited in the PbLi or in the solid membrane, and another that is the ratio of axial and radial transport times in the PbLi. The permeator efficiency is maximized by decreasing the velocity and tube diameter, and increasing the tube length. This is true regardless of the mass transport correlation used; we review several here and find that they differ little, and the choice of correlation is not a source of significant uncertainty here. The PbLi solubility, on the other hand, is a large source of uncertainty, and we identify upper and lower bounds from the literature data. Under the most optimistic assumptions, we find that a ferritic steel permeator operating at 550 °C will need to be at least an order of magnitude larger in volume than previous conceptual designs using niobium and operating at higher temperatures.

  18. Extraction, Purification, and NMR Analysis of Terpenes from Brown Algae.

    Science.gov (United States)

    Gaysinski, Marc; Ortalo-Magné, Annick; Thomas, Olivier P; Culioli, Gérald

    2015-01-01

    Algal terpenes constitute a wide and well-documented group of marine natural products with structures differing from their terrestrial plant biosynthetic analogues. Amongst macroalgae, brown seaweeds are considered as one of the richest source of biologically and ecologically relevant terpenoids. These metabolites, mostly encountered in algae of the class Phaeophyceae, are mainly diterpenes and meroditerpenes (metabolites of mixed biogenesis characterized by a toluquinol or a toluquinone nucleus linked to a diterpene moiety).In this chapter, we describe analytical processes commonly employed for the isolation and structural characterization of the main terpenoid constituents obtained from organic extracts of brown algae. The successive steps include (1) extraction of lipidic content from algal samples; (2) purification of terpenes by column chromatography and semi-preparative high-performance liquid chromatography; and (3) structure elucidation of the isolated terpenes by means of 1D and 2D nuclear magnetic resonance (NMR). More precisely, we propose a representative methodology which allows the isolation and structural determination of the monocyclic meroditerpene methoxybifurcarenone (MBFC) from the Mediterranean brown alga Cystoseira amentacea var. stricta. This methodology has a large field of applications and can then be extended to terpenes isolated from other species of the family Sargassaceae.

  19. Analysis on health information extracted from an urban professional population in Beijing

    Institute of Scientific and Technical Information of China (English)

    ZHANG Tie-mei; ZHANG Yan; LIU Bin; JIA Hong-bo; LIU Yun-jie; ZHU Ling; LUO Sen-lin; HAN Yi-wen; ZHANG Yan; YANG Shu-wen; LIU An-nan; MA Lan-jun; ZHAO Yan-yan

    2011-01-01

    Background The assembled data from a population could provide information on health trends within the population.The aim of this research was to extract and know basic health information from an urban professional population in Beijing.Methods Data analysis was carried out in a population who underwent a routine medical check-up and aged >20 years,including 30 058 individuals.General information,data from physical examinations and blood samples were collected in the same method.The health status was separated into three groups by the criteria generated in this study,i.e.,people with common chronic diseases,people in a sub-clinic situation,and healthy people.The proportion of both common diseases suffered and health risk distribution of different age groups were also analyzed.Results The proportion of people with common chronic diseases,in the sub-clinic group and in the healthy group was 28.6%,67.8% and 3.6% respectively.There were significant differences in the health situation in different age groups.Hypertension was on the top of list of self-reported diseases.The proportion of chronic diseases increased significantly in people after 35 years of age.Meanwhile,the proportion of sub-clinic conditions was decreasing at the same rate.The complex risk factors to health in this population were metabolic disturbances (61.3%),risk for tumor (2.7%),abnormal results of morphological examination (8.2%) and abnormal results of lab tests of serum (27.8%).Conclusions Health information could be extracted from a complex data set from the heath check-ups of the general population.The information should be applied to support prevention and control chronic diseases as well as for directing intervention for patients with risk factors for disease.

  20. Antioxidant, DNA protective efficacy and HPLC analysis of Annona muricata (soursop) extracts.

    Science.gov (United States)

    George, V Cijo; Kumar, D R Naveen; Suresh, P K; Kumar, R Ashok

    2015-04-01

    Annona muricata is a naturally occurring edible plant with wide array of therapeutic potentials. In India, it has a long history of traditional use in treating various ailments. The present investigation was carried out to characterize the phytochemicals present in the methanolic and aqueous leaf extracts of A. muricata, followed by validation of its radical scavenging and DNA protection activities. The extracts were also analyzed for its total phenolic contents and subjected to HPLC analysis to determine its active metabolites. The radical scavenging activities were premeditated by various complementary assays (DRSA, FRAP and HRSA). Further, its DNA protection efficacy against H2O2 induced toxicity was evaluated using pBR322 plasmid DNA. The results revealed that the extracts were highly rich in various phytochemicals including luteolin, homoorientin, tangeretin, quercetin, daidzein, epicatechin gallate, emodin and coumaric acid. Both the extracts showed significant (p < 0.05) radical scavenging activities, while methanolic extract demonstrated improved protection against H2O2-induced DNA damage when compared to aqueous extract. A strong positive correlation was observed for the estimated total phenolic contents and radical scavenging potentials of the extracts. Further HPLC analysis of the phyto-constituents of the extracts provides a sound scientific basis for compound isolation.

  1. Preliminary phytochemical screening, Antibacterial potential and GC-MS analysis of two medicinal plant extracts.

    Science.gov (United States)

    Vijayaram, Seerangaraj; Kannan, Suruli; Saravanan, Konda Mani; Vasantharaj, Seerangaraj; Sathiyavimal, Selvam; P, Palanisamy Senthilkumar

    2016-05-01

    The presence study was aimed to catalyze the primary metabolites and their confirmation by using GC-MS analysis and antibacterial potential of leaf extract of two important medicinal plant viz., Eucalyptus and Azadirachta indica. The antibacterial potential of the methanol leaf extract of the studied species was tested against Escherichia coli, Pseudomonas aeruginosa, Klebsiellap neumoniae, Streptococcus pyogens, Staphylococcus aureus using by agar well diffusion method. The higher zone of inhibition (16mm) was observed against the bacterium Pseudomonas aeruginosa at 100μl concentration of methanol leaf extract. Preliminary phytochemical analysis of studied species shows that presence of phytochemical compounds like steroids, phenolic compounds and flavonoids. GC-MS analysis confirms the occurrence of 20 different compounds in the methanol leaf extract of the both studied species.

  2. Analysis of gamma irradiated pepper constituents, 3. The supercritical fluid extraction of pepper perfume

    Energy Technology Data Exchange (ETDEWEB)

    Takagi, Kazuko; Okuyama, Tsuneo; Yamauchi, Yoshio; Saito, Muneo.

    1988-11-01

    The extraction of pepper perfume by use of supercritical fluid extraction (SFE) was investigated. Carbon dioxide was used as supercritical mobile phase. SFE was achieved by follow conditions, temperature was 40deg C, pressure was 200 kgf/cm/sup 2/, 5 % methanol was added to mobile phase and the extraction time was 60 minutes. The extracted fraction by this method was yellow oily substance and was pepper perfume rich fraction, while the residue of extraction had not only perfume but also any pungency. And it seems that most part of pepper perfume was extracted by Supercritical fluid extraction. The perfume fraction was analyzed by two way method, that is, supercritical fluid chromatography (SFC) and reversed phase HPLC. SFC conditions were same as SFE. HPLC conditions were described as the first report. By both methods, about 7 peaks were detected. According to their analysis of this fraction, the main component was identified as piperine. On the chromatogram of reversed phase HPLC of extract, most peaks were eluted later than piperine. And it is thought that most perfume components have high hydrophobicity more than piperine. The change of perfume of pepper was able to be discussed based on the extraction by SFE.

  3. Phytochemical analysis of Myrtus communis plant: Conventional versus microwave assisted-extraction procedures.

    Science.gov (United States)

    Bouaoudia-Madi, Nadia; Boulekbache-Makhlouf, Lila; Kadri, Nabil; Dahmoune, Farid; Remini, Hocine; Dairi, Sofiane; Oukhmanou-Bensidhoum, Sonia; Madani, Khodir

    2017-06-10

    Background Myrtle (Myrtus communis L) may constitute an interesting dietary source of health protective compounds. Microwave-assisted extraction (MAE) of total phenolic compounds (TPC) from myrtle leaf, stems, pericarp, and seeds was studied and the results were compared with those of the conventional method extraction (CME) in terms of extraction time. Methods Extraction yield/efficiency and antioxidant activity were measured using radical scavenging assay (DPPH•) and reducing power. Results The results show that the MAE was higher in terms of saving energy, extraction time (62 s) and extraction efficiency of bioactive compound compared to CME (2 h). Leaf presented the optimum content of total phenols (250 mg GAE.g-1 DW) and flavonoids (13.65 mg GAE.g-1 DW). However, the anthocyanin content was most important in pericarp extract (176.50±2.17 mg Cyd-3-glu g-1 DW). The antioxidant activity was important in all parts, mainly in leaves. The results indicated that appropriate microwave treatment could be an efficient process to phenolic compounds recovery and thus, better the antioxidant activity of myrtle extract. Conclusions Principal component analysis (PCA) applied to the experimental data shows that the distribution of the myrtle phenolic compounds depended on their plant part localization as well as the extraction method.

  4. Evaluation of Factors Affecting Cesium Extraction Performance by Calix[4]Arene Derivatives

    Energy Technology Data Exchange (ETDEWEB)

    Rumppe, J.L.; Delmau, L.

    2004-01-01

    Novel aza-crown derivatives of dioctyloxy-calix[4]arene crown-6 were examined for their cesium extraction performance at different pH levels. These studies are of interest in addressing high-level waste tank remediation and the removal of 137Cs, a major contributor to heat and radiation generation. Preliminary studies were done to assess the performance of these calixarene compounds under varying conditions. Results showed an increase of cesium extraction with pH as well as expected trends in diluent effects and anion selectivity. Poor extraction performance of some aza-crown derivatives raised questions regarding the possibility of intramolecular hydrogen-bonding. A novel methylated derivative was used to address these questions. Additional experiments were conducted to determine the extraction effect on pH. Results indicate an increase in cesium extraction with pH, as shown in preliminary studies. Mono-aza derivatives were shown to exhibit better cesium extraction performance than their di-aza counterparts. The methylated derivative showed poorer extraction performance than the non-methylated derivative, indicating that completely removing the possibility of intramolecular hydrogen-bonding has negative effects on extraction performance. This suggests that the hydrogen-bonding facilitates anion co-extraction, which would lead to better overall extraction. Mono-aza derivatives were shown to cause unexpected changes in pH. This could possibly be attributed to protonation of the calix crown.

  5. Grape seed extract inhibits angiogenesis via suppression of the vascular endothelial growth factor receptor signaling pathway.

    Science.gov (United States)

    Wen, Wei; Lu, Jianming; Zhang, Keqiang; Chen, Shiuan

    2008-12-01

    Blockade of angiogenesis is an important approach for cancer treatment and prevention. Vascular endothelial growth factor (VEGF) is one of the most critical factors that induce angiogenesis and has thus become an attractive target for antiangiogenesis treatment. However, most current anti-VEGF agents often cause some side effects when given chronically. Identification of naturally occurring VEGF inhibitors derived from diet would be one alternative approach with an advantage of known safety. Grape seed extract (GSE), a widely used dietary supplement, is known to have antitumor activity. In this study, we have explored the activity of GSE on VEGF receptor and angiogenesis. We found that GSE could directly inhibit the kinase activity of purified VEGF receptor 2, a novel activity of GSE that has not been characterized. GSE could also inhibit the VEGF receptor/mitogen-activated protein kinase-mediated signaling pathway in endothelial cells. As a result, GSE could inhibit VEGF-induced endothelial cell proliferation and migration as well as sprout formation from aorta ring. In vivo assay further showed that GSE could inhibit tumor growth and tumor angiogenesis of MDA-MB-231 breast cancer cells in mice. Consistent with the in vitro data, GSE treatment of tumor-bearing mice led to concomitant reduction of blood vessel density and phosphorylation of mitogen-activated protein kinase. Depletion of polyphenol with polyvinylpyrrolidone abolished the antiangiogenic activity of GSE, suggesting a water-soluble fraction of polyphenol in GSE is responsible for the antiangiogenic activity. Taken together, this study indicates that GSE is a well-tolerated and inexpensive natural VEGF inhibitor and could potentially be useful in cancer prevention or treatment.

  6. Housing price forecastability: A factor analysis

    DEFF Research Database (Denmark)

    Bork, Lasse; Møller, Stig Vinther

    of the model stays high at longer horizons. The estimated factors are strongly statistically signi…cant according to a bootstrap resampling method which takes into account that the factors are estimated regressors. The simple three-factor model also contains substantial out-of-sample predictive power...

  7. A Second Generation Nonlinear Factor Analysis.

    Science.gov (United States)

    Etezadi-Amoli, Jamshid; McDonald, Roderick P.

    1983-01-01

    Nonlinear common factor models with polynomial regression functions, including interaction terms, are fitted by simultaneously estimating the factor loadings and common factor scores, using maximum likelihood and least squares methods. A Monte Carlo study gives support to a conjecture about the form of the distribution of the likelihood ratio…

  8. A method to extract soil water for stable isotope analysis

    Science.gov (United States)

    Revesz, K.; Woods, P.H.

    1990-01-01

    A method has been developed to extract soil water for determination of deuterium (D) and 18O content. The principle of this method is based on the observation that water and toluene form an azeotropic mixture at 84.1??C, but are completely immiscible at ambient temperature. In a specially designed distillation apparatus, the soil water is distilled at 84.1??C with toluene and is separated quantitatively in the collecting funnel at ambient temperature. Traces of toluene are removed and the sample can be analyzed by mass spectrometry. Kerosene may be substituted for toluene. The accuracy of this technique is ?? 2 and ?? 0.2???, respectively, for ??D and ??18O. Reduced accuracy is obtained at low water contents. ?? 1990.

  9. EKSTRAKSI DAN ANALISIS FITOSTEROL LEMBAGA GANDUM [Extraction and analysis of Phytosterol from wheat germ (Triticum sp.

    Directory of Open Access Journals (Sweden)

    Latifah K Darusman3

    2005-04-01

    Full Text Available Phytosterol may reduce the absorption of cholesterol, and used for preventing atherosclerosis. It is limited in soybean, but potentially abundant in wheat germ. Research on the utilization of wheat germ sterol had not been reported so far. Many aspects of germ sterol extraction from wheat germ and its characteristics were still unknown. In this research, the best extraction method, kinds and content of phytosterol from wheat germ were investigated.This research consisted of two steps: (1 extraction of phytosterol directly form whole germ and ground germ using hexane, and indirect extraction through germ oil using hexane and mixed solvent of hexane and ethanol, and direct extraction from ground germ using ethanol; (2 analysis of the type and content of phytosterol in the crude extract through the following steps: preparation of crude extract, fractionation, and analysis.Results showed that indirect extraction through germ oil was considered as the best method which yielded 1.37% of phytosterol. The highest yield was obtained when extracted using a mixed solvent of hexane – ethanol 82:18. However, the odor of ethanol and hexane (gasoline like odor was still detected. The solvent’s ratio of hexane to ethanol at 1:2 resulted better odor of the extract. Extraction of sterol using ethanol yielded 18.39% of sterol when the ratio of germ to ethanol at 1:10 (w/v was applied.Results of quantitative analysis on the main component of crude extract of wheat germ sterol showed that the total content of sterol extracted with mixed solvent was higher than those extracted with ethanol. The ratio of hexane to ethanol at 1:1 (v/v gave higher content of total sterol, stigmasterol and campesterol, whereas higher content of -sitosterol was produced at the solvent’s ratio of hexane to ethanol at 1:2 (v/v.

  10. Antimicrobial activity and phytochemical analysis of crude extracts and essential oils from medicinal plants.

    Science.gov (United States)

    Silva, N C C; Barbosa, L; Seito, L N; Fernandes, A

    2012-01-01

    We aimed to establish a phytochemical analysis of the crude extracts and performed GC-MS of the essential oils (EOs) of Eugenia uniflora L. (Myrtaceae) and Asteraceae species Baccharis dracunculifolia DC, Matricaria chamomilla L. and Vernonia polyanthes Less, as well as determining their antimicrobial activity. Establishment of the minimal inhibitory concentrations of the crude extracts and EOs against 16 Staphylococcus aureus and 16 Escherichia coli strains from human specimens was carried out using the dilution method in Mueller-Hinton agar. Some phenolic compounds with antimicrobial properties were established, and all EOs had a higher antimicrobial activity than the extracts. Matricaria chamomilla extract and E. uniflora EO were efficient against S. aureus strains, while E. uniflora and V. polyanthes extracts and V. polyanthes EO showed the best antimicrobial activity against E. coli strains. Staphylococcus aureus strains were more susceptible to the tested plant products than E. coli, but all natural products promoted antimicrobial growth inhibition.

  11. Using growth factors in human extraction sockets: a histologic and histomorphometric evaluation of short-term healing

    NARCIS (Netherlands)

    Geurs, N.; Ntounis, A.; Vassilopoulos, P.; van der Velden, U.; Loos, B.G.; Reddy, M.

    2014-01-01

    Purpose: Ridge preservation protocols reduce crestal remodeling after tooth extraction. There is insufficient evidence on bone grafting in combination with platelet-rich plasma (PRP) or recombinant human platelet-derived growth factor (rhPDGF-BB). The aim of this study is to evaluate healing of graf

  12. Cataract extraction surgery in patients with uveitis in Taiwan: Risk factors and outcomes

    Directory of Open Access Journals (Sweden)

    Chang-Pin Lin

    2014-06-01

    Conclusion: Cataract extraction can improve visual function for most patients with uveitis. Postoperative complications were not uncommon and Behcet's disease had the poorest postoperative visual prognosis.

  13. Metabolic syndrome in the rural population of Wardha, Central India: An exploratory factor analysis

    Directory of Open Access Journals (Sweden)

    Pradeep R Deshmukh

    2013-01-01

    Full Text Available Background and Objectives: Metabolic syndrome - a plausible precondition for type II diabetes and cardiovascular diseases is also on rise. To understand the mechanistic complexity of metabolic syndrome it is imperative to study the specific contribution of the determinants of metabolic syndrome. Such study can help to identify the most significant factor which may be of use in early detection as well as prevention efforts. Such information is scarcely available from India and especially from rural India. Hence, the present study was undertaken to explore for such factor which might be considered crucial for development of such pathogenesis particularly in rural population of Wardha. Methods: A cross-sectional study comprising of 300 subjects was carried out in rural area of Primary Health Center, attached to medical college with approximate 31,000 populations. The anthropometric parameters such as height, weight, waist circumference were measured. Overnight fasting samples were collected for lipid profile (total cholesterol, triglyceride, high density lipoproteins, low density lipoproteins, very low density lipoproteins and fasting blood glucose levels. The National Cholesterol Education Programme Adult Treatment Panel, ATP-III guidelines were used to categorize the study subjects. As many of the variables are highly intercorrelated, exploratory factor analysis was carried out to reduce the data to a smaller number of independent factors that accounts for the most of the variances in the data. Principal component analysis was used as a method of extraction. Results: For both sexes, three factors were extracted accounting for about 71% variance in the measured variables. An adiposity factor which accounted for highest explained variance (28%, was the initial factor extracted. It was loaded positively by waist circumference, triglyceride, and very low density lipoprotein and negatively loaded by high density lipoprotein. Second factor extracted

  14. The Evaluation of Testes Extracts on Spermatogonial Stem Cells’ Self-Renewal Property Compared to Their Specific Growth Factors

    Directory of Open Access Journals (Sweden)

    Sohrab Boozarpour

    2014-07-01

    Full Text Available Introduction: Spermatogonial stem cells are regarded as the continual generator of sperms in males. They possess the potential to regenerate themselves, provided by the niche, which is necessary for substituting the old sperms with the new ones and their population’s maintenance. There are demanding efforts conducted often on spermatogonial stem cells, and some special growth factors with the capability of reestablishment of this niche under experimental circumstances, but there have been few studies on poultries in this respect. Methods: In the present study, the impact of adult mice and roosters testes extracts on colony-formation potential of chicken spermatogonial stem cells in the course of four days, as compared to those of three conventional growth factors (LIF, bFGF and GDNF was investigated. After determination of the optimum concentrations of growth factors, OCT4 gene expression was measured as one of spermatogonial stem cell activities’ signature via Real-time RT-PCR technique during two weeks treatment. Results: The results of colony forming activity show that in vitro treatment by the mice and roosters testes extracts and the three mentioned growth factors (GDNF,bFGF and LIF had a considerably discrepancies in terms of the number of created colonies compared to the control group (without adding any factor after four days. Moreover, the OCT4 over-expressed extremely by these biological impulses after two weeks. Conclusion: The results indicated that the testes extract would be a valuable substitute for non-economical industrial growth factors.

  15. Optimising the Use of TRIzol-extracted Proteins in Surface Enhanced Laser Desorption/ Ionization (SELDI Analysis

    Directory of Open Access Journals (Sweden)

    Perlaky Laszlo

    2006-03-01

    Full Text Available Abstract Background Research with clinical specimens is always hampered by the limited availability of relevant samples, necessitating the use of a single sample for multiple assays. TRIzol is a common reagent for RNA extraction, but DNA and protein fractions can also be used for other studies. However, little is known about using TRIzol-extracted proteins in proteomic research, partly because proteins extracted from TRIzol are very resistant to solubilization. Results To facilitate the use of TRIzol-extracted proteins, we first compared the ability of four different common solubilizing reagents to solubilize the TRIzol-extracted proteins from an osteosarcoma cell line, U2-OS. Then we analyzed the solubilized proteins by Surface Enhanced Laser Desorption/ Ionization technique (SELDI. The results showed that solubilization of TRIzol-extracted proteins with 9.5 M Urea and 2% CHAPS ([3-[(3-cholamidopropyl-dimethylammonio]propanesulfonate] (UREA-CHAPS was significantly better than the standard 1% SDS in terms of solubilization efficiency and the number of detectable ion peaks. Using three different types of SELDI arrays (CM10, H50, and IMAC-Cu, we demonstrated that peak detection with proteins solubilized by UREA-CHAPS was reproducible (r > 0.9. Further SELDI analysis indicated that the number of ion peaks detected in TRIzol-extracted proteins was comparable to a direct extraction method, suggesting many proteins still remain in the TRIzol protein fraction. Conclusion Our results suggest that UREA-CHAPS performed very well in solubilizing TRIzol-extracted proteins for SELDI applications. Protein fractions left over after TRIzol RNA extraction could be a valuable but neglected source for proteomic or biochemical analysis when additional samples are not available.

  16. Phytochemical analysis and standardization of Strychnos nux-vomica extract through HPTLC techniques

    Directory of Open Access Journals (Sweden)

    Dinesh Kumar Patel

    2012-05-01

    Full Text Available Objective: The objective is to develop a noval qualitative and quantitative method by which we can determine different phytoconstituents of Strychnos nux-vomica L. Methods: To profile the phyconstituents of Strychnos nux-vomica, in the present study hydroalcoholic extract of Strychnos nux-vomica was subjected to preliminary phytochemical analysis, antimicrobial activities against certain pathogenic microorganisms, solubility test, loss on drying and pH value. Extract was also subjected to the quantitative analysis including total phenol, flavonoid and heavy metal analysis. Quantitative analysis was performed through HPTLC methods using strychnine and brucine as a standard marker. Results: Phytochemical analysis revealed the presence of alkaloid, carbohydrate, tannin, steroid, triterpenoid and glycoside in the extract. Total flavonoid and phenol content of Strychnos nux-vomica L extract was found to be 0.40 % and 0.43%. Result showed that the level of heavy metal (lead, arsenic, mercury and cadmium complie the standard level. Total bacterial count, yeast and moulds contents were found to be under the limit whereas E. coli and salmonella was found to be absent in the extract. Content of strychnine and brucine were found to be 4.75% and 3.91%. Conclusions: These studies provide valluable information for correct identification and selection of the drug from various adulterations. In future this study will be helpful for the quantitative analysis as well as standardization of the Strychnos nux-vomica L.

  17. Disruptive Event Biosphere Doser Conversion Factor Analysis

    Energy Technology Data Exchange (ETDEWEB)

    M. Wasiolek

    2000-12-28

    The purpose of this report was to document the process leading to, and the results of, development of radionuclide-, exposure scenario-, and ash thickness-specific Biosphere Dose Conversion Factors (BDCFs) for the postulated postclosure extrusive igneous event (volcanic eruption) at Yucca Mountain. BDCF calculations were done for seventeen radionuclides. The selection of radionuclides included those that may be significant dose contributors during the compliance period of up to 10,000 years, as well as radionuclides of importance for up to 1 million years postclosure. The approach documented in this report takes into account human exposure during three different phases at the time of, and after, volcanic eruption. Calculations of disruptive event BDCFs used the GENII-S computer code in a series of probabilistic realizations to propagate the uncertainties of input parameters into the output. The pathway analysis included consideration of different exposure pathway's contribution to the BDCFs. BDCFs for volcanic eruption, when combined with the concentration of radioactivity deposited by eruption on the soil surface, allow calculation of potential radiation doses to the receptor of interest. Calculation of radioactivity deposition is outside the scope of this report and so is the transport of contaminated ash from the volcano to the location of the receptor. The integration of the biosphere modeling results (BDCFs) with the outcomes of the other component models is accomplished in the Total System Performance Assessment (TSPA), in which doses are calculated to the receptor of interest from radionuclides postulated to be released to the environment from the potential repository at Yucca Mountain.

  18. Nominal Performance Biosphere Dose Conversion Factor Analysis

    Energy Technology Data Exchange (ETDEWEB)

    M. Wasiolek

    2000-12-21

    The purpose of this report was to document the process leading to development of the Biosphere Dose Conversion Factors (BDCFs) for the postclosure nominal performance of the potential repository at Yucca Mountain. BDCF calculations concerned twenty-four radionuclides. This selection included sixteen radionuclides that may be significant nominal performance dose contributors during the compliance period of up to 10,000 years, five additional radionuclides of importance for up to 1 million years postclosure, and three relatively short-lived radionuclides important for the human intrusion scenario. Consideration of radionuclide buildup in soil caused by previous irrigation with contaminated groundwater was taken into account in the BDCF development. The effect of climate evolution, from the current arid conditions to a wetter and cooler climate, on the BDCF values was evaluated. The analysis included consideration of different exposure pathway's contribution to the BDCFs. Calculations of nominal performance BDCFs used the GENII-S computer code in a series of probabilistic realizations to propagate the uncertainties of input parameters into the output. BDCFs for the nominal performance, when combined with the concentrations of radionuclides in groundwater allow calculation of potential radiation doses to the receptor of interest. Calculated estimates of radionuclide concentration in groundwater result from the saturated zone modeling. The integration of the biosphere modeling results (BDCFs) with the outcomes of the other component models is accomplished in the Total System Performance Assessment (TSPA) to calculate doses to the receptor of interest from radionuclides postulated to be released to the environment from the potential repository at Yucca Mountain.

  19. SCREENING FOR ANTIMICROBIAL ACTIVITY AND PHYTOCHEMICAL ANALYSIS OF VARIOUS LEAF EXTRACT OF MURRAYA KOENIGII

    Directory of Open Access Journals (Sweden)

    C. Baskaran

    2011-06-01

    Full Text Available To investigate the antimicrobial activity and phytochemical screening Ethanol, methanol, Ethyl acetate, aceton,chloroform, Petroleum ether, hexane, hot water, and extracts of Murraya koenigii. The aim of the present study was to evaluate the qualitative analysis of phytochemicals and antimicrobial activity of various solvent extracts of Murraya koenigii. The antimicrobial activity of different solvent extracts of Murraya koenigii were tested against the Gram-positive and Gram-negative bacterial strains and fungus by observing the zone of inhibition. The Gram-positive bacteria used in the test were Staphylococcus aureus, Bacillus cereus and Micrococcus luteus, and the Gram-negative bacteria were Escherichia coli, Pseudomonas aeruginosa and Klebsiella pneumoniae, fungus like Aspergillus niger, Candida albicans, Candida tropicalis, Cryptococcus neoformans and Candida kefyr. It was observed that ethanol, methanol, ethyl acetate, aceton, chloroform, petroleum ether, hexane and aquas extracts showed activity against bacteria and fungus. The Hot water extract of Murraya koenigii showed more activity against Staphylococcus aureus, zone of diameter 28.17±0.29mm and Ethanol extract of Murraya koenigii showed more activity against Aspergillus niger and Candida tropicalis, zone of diameter 12.17±0.15mm compared to other solvent extracts. In this study Hot water Extract in bacteria and Ethanol Extract in fungus showed a varying degree of inhibition to the growth of tested organism, than methanol, Ethyl acetate, aceton, chloroform, Petroleum ether, hexane, and acetone extracts, The results confirmed the presence of antibacterial activity of Murraya koenigii extract against various human pathogenic bacteria. Presences of phytochemical and antimicrobial activity are confirmed.

  20. Comparative and quantitative analysis of antioxidant and scavenging potential of Indigofera tinctoria Linn. extracts

    Institute of Scientific and Technical Information of China (English)

    Rashmi Singh; Shatruhan Sharma; Veena Sharma

    2015-01-01

    OBJECTIVE: To compare and elucidate the antioxidant efifcacy of ethanolic and hydroethanolic extracts ofIndigofera tinctoriaLinn. (Fabaceae family). METHODS: Variousin-vitro antioxidant assays and free radical-scavenging assays were done. Quantitative measurements of various phytoconstituents, reductive abilities and chelating potential were carried out along with standard compounds. Half inhibitory concentration (IC50) values for ethanol and hydroethanol extracts were analyzed and compared with respective standards. RESULTS: Hydroethanolic extracts showed considerably more potent antioxidant activity in comparison to ethanol extracts. Hydroethanolic extracts had lower IC50 values than ethanol extracts in the case of DPPH, metal chelation and hydroxyl radical-scavenging capacity (829, 659 and 26.7 μg/mL) but had slightly higher values than ethanol in case of SO2- and NO2-scavenging activity (P< 0.001vs standard). Quantitative measurements also showed that the abundance of phenolic and lfavonoid bioactive phytoconstituents were signiifcantly (P< 0.001) greater in hydroethanol extracts (212.920 and 149.770 mg GAE and rutin/g of plant extract respectively) than in ethanol extracts (211.691 and 132.603 mg GAE and rutin/g of plant extract respectively). Karl Pearson’s correlation analysis (r2) between various antioxidant parameters and bioactive components also associated the antioxidant potential ofI. tinctoria with various phytoconstituents, especialy phenolics, lfavonoids, saponins and tannins. CONCLUSION: This study may be helpful to draw the attention of researchers towards the hydroethanol extracts ofI. tinctoria, which has a high yield, and great prospects in herbal industries to produce inexpensive and powerful herbal products.

  1. Analysis of Volatile Compounds from Solanumbetaceum Cav. Fruits from Panama by Head-Space Micro Extraction

    Directory of Open Access Journals (Sweden)

    Armando A. Durant

    2013-01-01

    Full Text Available The characterization of the volatile compounds of two varieties of Solanum betaceum Cav. by means of headspace solid-phase microextraction (HS-SPME coupled with gas chromatography-mass spectrometry ( GC-MS i s presented. The HS-SPME method for extraction of the volatiles compounds was optimized by using a 2 3 central composite design. Maximum extraction of volatile compounds was achieved by using a divinylbenzene-carboxen-polydimethylsiloxane (DVB/CAR/PDMS fiber, extraction temperature 76° C, incubation time 44 min, and extraction time of 46 min. The main types of compounds detected in both varieties are terpenoids, followed by aromatics, esters, and aldehydes. Golden-yellow cultivars contained higher levels of esters and terpenes, while the reddish-purple variety contained a significant amount of aromatic compounds. The data structure of the chemical information obtained as well as the relationship between variables was evaluated by means of principal component analysis and cluster analysis.

  2. Texture features analysis for coastline extraction in remotely sensed images

    Science.gov (United States)

    De Laurentiis, Raimondo; Dellepiane, Silvana G.; Bo, Giancarlo

    2002-01-01

    The accurate knowledge of the shoreline position is of fundamental importance in several applications such as cartography and ships positioning1. Moreover, the coastline could be seen as a relevant parameter for the monitoring of the coastal zone morphology, as it allows the retrieval of a much more precise digital elevation model of the entire coastal area. The study that has been carried out focuses on the development of a reliable technique for the detection of coastlines in remotely sensed images. An innovative approach which is based on the concepts of fuzzy connectivity and texture features extraction has been developed for the location of the shoreline. The system has been tested on several kind of images as SPOT, LANDSAT and the results obtained are good. Moreover, the algorithm has been tested on a sample of a SAR interferogram. The breakthrough consists in the fact that the coastline detection is seen as an important features in the framework of digital elevation model (DEM) retrieval. In particular, the coast could be seen as a boundary line all data beyond which (the ones representing the sea) are not significant. The processing for the digital elevation model could be refined, just considering the in-land data.

  3. Composition analysis and antioxidant properties of black garlic extract

    Directory of Open Access Journals (Sweden)

    Xiaoming Lu

    2017-04-01

    Full Text Available Black garlic produced from fresh garlic under controlled high temperature and humidity has strong antioxidant properties. To determine these compounds, five fractions (from F1 to F5 were separated and purified by elution with chloroform:methanol at different ratios (8:1, 6:1, 4:1, 2:1, and 0:1; v/v. The antioxidant activity of each fraction was analyzed. The results showed that F3 and F4 had higher phenolic contents and stronger 2,2-diphenyl-2-picrylhydrazyl radical scavenging activity than the others. Seven purified individual components were further separated using semipreparation high-performance liquid chromatography from these two intensely antioxidant fractions (F3 and F4, their structures were elucidated by high-performance liquid chromatography coupled to diode array detection, electrospray ionization, mass spectrometry, 1H nuclear magnetic resonance, and 13C nuclear magnetic resonance spectrometry. Three compounds including adenosine, uridine, and 2-acetylpyrrole were first identified in black garlic, except for 5-hydroxymethylfurfural, (1S, 3S-1-methyl-1,2,3,4-tetrahydro-β-carboline-3-carboxylic acid, and (1R, 3S-1-methyl-1,2,3,4-tetrahydro-β-carboline-3-carboxylic acid. The cellular antioxidant activities of uridine, adenosine, carboline alkaloids, 5-hydroxymethylfurfural, and ethyl acetate extracts were consistent with the results of in vitro experimental antioxidant properties. The results provide useful information for understanding the health benefits of black garlic products.

  4. Supercritical Fluid Extraction of Quinones from Compost for Microbial Community Analysis

    Directory of Open Access Journals (Sweden)

    Ni Luh Gede Ratna Juliasih

    2015-01-01

    Full Text Available Supercritical fluid extraction (SFE was used to extract quinones from compost to monitor the microbial community dynamics during composting. The 0.3 g of dried compost was extracted using 3 mL min−1 of carbon dioxide (90% and methanol (10% at 45°C and 25 MPa for a 30 min extraction time. The extracted quinones were analysed using ultra performance liquid chromatography (UPLC with 0.3 mL min−1 of methanol mobile phase for a 50 min chromatographic run time. A comparable detected amount of quinones was obtained using the developed method and an organic solvent extraction method, being 36.06 μmol kg−1 and 34.54 μmol kg−1, respectively. Significantly low value of dissimilarity index (D between the two methods (0.05 indicated that the quinone profile obtained by both methods was considered identical. The developed method was then applied to determine the maturity of the compost by monitoring the change of quinone during composting. The UQ-9 and MK-7 were predominant quinones in the initial stage of composting. The diversity of quinone became more complex during the cooling and maturation stages. This study showed that SFE had successfully extracted quinones from a complex matrix with simplification and rapidity of the analysis that is beneficial for routine analysis.

  5. Effects of Ginkgo biloba extract on cytoprotective factors in rats with duodenal ulcer

    Institute of Scientific and Technical Information of China (English)

    Jane C.-J. Chao; Huei-Chen Hung; Sheng-Hsuan Chen; Chia-Lang Fang

    2004-01-01

    AIM: To investigate the effects of Ginkgo biloba extract on cytoprotective factors in rats with duodenal ulcer.METHODS: Sprague-Dawley rats were randomly divided into four groups: sham operation without ginkgo, sham operation with ginkgo, duodenal ulcer without ginkgo, and duodenal ulcer with ginkgo. Rats with duodenal ulcer were induced by 500 mL/L acetic acid. Rats with ginkgo were intravenously injected with Ginkgo biloba extract from the tail at a dose of 0.5 mg/(kg.d) for 7 and 14 days.RESULTS: Pathological result showed that duodenal ulcer rats with ginkgo improved mucosal healing and inflammation compared with those without ginkgo after 7 d treatment. After 14 d treatment, duodenal ulcer rats with ginkgo significantly increased weight gain (34.0±4.5 g versus 24.5±9.5 g,P<0.05) compared with those without ginkgo. Duodenal ulcer rats significantly increased cell proliferation (27.4l±4.0and 27.8±2.3 BrdU-labeled cells in duodenal ulcer rats with and without ginkgo versus 22.4±3.5 and 20.8±0.5 BrdUlabeled cells in sham operation rats with and without ginkgo,P<0.05) compared with sham operation rats. Mucosal prostaglandin E2 concentration significantly increased by 129% (P<0.05) in duodenal ulcer rats with ginkgo compared with that in those without ginkgo. Duodenal ulcer rats without ginkgo significantly decreased superoxide dismutase activity in the duodenal mucosa and erythrocytes (19.4±6.7 U/mg protein versus 38.1±18.9 U/mg protein in the duodenal mucosa,and 4.87±1.49 U/mg protein versus 7.78±2.16 U/mg protein in erythrocytes, P<0.05) compared with sham operation rats without ginkgo. However, duodenal ulcer rats with ginkgo significantly increased erythrocyte superoxide dismutase activity (8.22±1.92 U/mg protein versus 4.87±1.49 U/mg protein,P<0.05) compared with those without ginkgo. Duodenal ulcer rats without ginkgo significantly increased plasma lipid peroxides (4.18±1. 12 μmol/mL versus 1.60±1.10 μmol/mL and 1.80±0.73

  6. Extraction of Terraces on the Loess Plateau from High-Resolution DEMs and Imagery Utilizing Object-Based Image Analysis

    Directory of Open Access Journals (Sweden)

    Hanqing Zhao

    2017-05-01

    Full Text Available Abstract: Terraces are typical artificial landforms on the Loess Plateau, with ecological functions in water and soil conservation, agricultural production, and biodiversity. Recording the spatial distribution of terraces is the basis of monitoring their extent and understanding their ecological effects. The current terrace extraction method mainly relies on high-resolution imagery, but its accuracy is limited due to vegetation coverage distorting the features of terraces in imagery. High-resolution topographic data reflecting the morphology of true terrace surfaces are needed. Terraces extraction on the Loess Plateau is challenging because of the complex terrain and diverse vegetation after the implementation of “vegetation recovery”. This study presents an automatic method of extracting terraces based on 1 m resolution digital elevation models (DEMs and 0.3 m resolution Worldview-3 imagery as auxiliary information used for object-based image analysis (OBIA. A multi-resolution segmentation method was used where slope, positive and negative terrain index (PN, accumulative curvature slope (AC, and slope of slope (SOS were determined as input layers for image segmentation by correlation analysis and Sheffield entropy method. The main classification features based on DEMs were chosen from the terrain features derived from terrain factors and texture features by gray-level co-occurrence matrix (GLCM analysis; subsequently, these features were determined by the importance analysis on classification and regression tree (CART analysis. Extraction rules based on DEMs were generated from the classification features with a total classification accuracy of 89.96%. The red band and near-infrared band of images were used to exclude construction land, which is easily confused with small-size terraces. As a result, the total classification accuracy was increased to 94%. The proposed method ensures comprehensive consideration of terrain, texture, shape, and

  7. Secondary Metabolites Analysis of Methanol Extract of Surian (Toona sureni (Bl. Merr Leaf as Antioxidant Potential.

    Directory of Open Access Journals (Sweden)

    Yuhernita

    2011-04-01

    Full Text Available Secondary Metabolites Analysis of Methanol Extract of Surian (Toona sureni (Bl. Merr Leaf as AntioxidantPotential. The study of performed secondary metabolites from the methanol extract of Surian (Toona sureni (Bl. Merrleaves have been done by thin-layer chromatography (TLC method. The result showed that methanol extract of Surianleaves consist of alkaloid, flavonoid, polyphenol and terpenoid. All of them positively have the ability to scavenge 2,2-diphenyl-1-picrylhydrazyl (DPPH. It has IC50 (4.80 are smaller than the ascorbat acid standard (IC50 = 9.23.

  8. EXPLORATORY FACTOR ANALYSIS (EFA IN CONSUMER BEHAVIOR AND MARKETING RESEARCH

    Directory of Open Access Journals (Sweden)

    Marcos Pascual Soler

    2012-06-01

    Full Text Available Exploratory Factor Analysis (EFA is one of the most widely used statistical procedures in social research. The main objective of this work is to describe the most common practices used by researchers in the consumer behavior and marketing area. Through a literature review methodology the practices of AFE in five consumer behavior and marketing journals(2000-2010 were analyzed. Then, the choices made by the researchers concerning factor model, retention criteria, rotation, factors interpretation and other relevant issues to factor analysis were analized. The results suggest that researchers routinely conduct analyses using such questionable methods. Suggestions for improving the use of factor analysis and the reporting of results are presented and a checklist (Exploratory Factor Analysis Checklist, EFAC is provided to help editors, reviewers, and authors improve reporting exploratory factor analysis.

  9. Factor analysis of serogroups botanica and aurisina of Leptospira biflexa.

    Science.gov (United States)

    Cinco, M

    1977-11-01

    Factor analysis is performed on serovars of Botanica and Aurisina serogroup of Leptospira biflexa. The results show the arrangement of main factors serovar and serogroup specific, as well as the antigens common with serovars of heterologous serogroups.

  10. An Item Factor Analysis of the Mooney Problem Check List

    Science.gov (United States)

    Stewart, David W.; Deiker, Thomas

    1976-01-01

    Explores the factor structure of the Mooney Problem Check List (MPCL) at the junior and senior high school level by undertaking a large obverse factor analysis of item responses in three adolescent criterion groups. (Author/DEP)

  11. Hambatan Ekspresi Vascular Endothelial Growth Factor oleh Ekstrak Daun Sambung Nyawa pada Endotel Membran Korioalantois (EFFECTIVITY OF SAMBUNG NYAWA LEAF EXTRACT TO INHIBIT VASCULAR ENDOTHELIAL GROWTH FACTOR EXPRESSION ON ENDOTHELIALS OF CHORIOALLANTOIC

    Directory of Open Access Journals (Sweden)

    Iwan Sahrial Hamid

    2013-08-01

    Full Text Available Angiogenesis is the new blood vessels formation normality and important on growth and developmentof individu. Angiogenesis also have contribution to carcinogenesis or uncontrolled and malignant cancercell development, become pathologic condition like inflammatory and infection. The purpose of this researchfor knew the effectivities of Gynura procumbens extract on various dose for inhibition Vascular EndothelialGrowth Factor (VEGF expression. This research was done to effort cancer progress inhibition. However,angiogenesis is part of carcinogenesis causes. The Chorio Allantoic Membrane (CAM methods was usedfor this aim. Eggs at the age of nine days were divided into 6 groups. Group I were negative control ofvehicle, group II were zero treatment: 60 ng bFGF which aplicated into paper dish. The next four groupswere extract of Gynura procumbens that divided in four dose: 60, 75, 90 and 110 µg + bFGF 60 ng whichapplicated into  paper dish.  At the twelve days old, VEGF expression analysis was done whichimunohystochemical method with anti VEGF’s antibody. The result of this research showed that therewas significant different (p<0.05 on give of Gynura procumbens extract to VEGF expression. The mostsignificant VEGF inhibition by Gynura procumbens extract with dose 110 µg. The conclusion on this studywas Gynura procumbens extract effective to inhibit the VEGF expression on CAM embrio chick.

  12. Antifungal effect of some plant extracts against factors wheat root rot

    Science.gov (United States)

    Atmaca, Sevim; Şimşek, Şeyda; Denek, Yunus Emre

    2017-04-01

    Methanol leaf extracts of Humulus lupulus L. and Achillea millefolium L. were evaluated for antifungal activity against economically important phytopathogenic fungi including Fusarium culmorum (W. G. Smith) Sacc. The final concentrations of the methanol extracts obtained from the plants were added to the Potato Dextrose Agar (PDA) at 1%, 2%, 4% and 8% doses. Mycelial disks of pathogens (6 mm in diameter) removed from the margins of a 7 days old culture were transferred to PDA media containing the plant extracts at tested concentrations. Four replicates were used per treatment. For each plant extract and concentration, inhibition of radial growth compared with the untreated control was calculated after 7 days of incubation at 24±1°C, in the dark. Extracts H. lupulus and A. millefolium inhibited the mycelial growth of F. culmorum of mycelial growth of 8% dose of the pathogens by 92.77% and 69.83%, respectively. It has been observed that the antifungal effect of the extracts increases with dose increase. As a result, at least micelle growth and the highest percent inhibition rate were obtained at 8% dose of the extract H. lupulus. H. lupulus extract can be used as a biological preparation.

  13. Analysis of sampling artifacts on the Granger causality analysis for topology extraction of neuronal dynamics.

    Science.gov (United States)

    Zhou, Douglas; Zhang, Yaoyu; Xiao, Yanyang; Cai, David

    2014-01-01

    Granger causality (GC) is a powerful method for causal inference for time series. In general, the GC value is computed using discrete time series sampled from continuous-time processes with a certain sampling interval length τ, i.e., the GC value is a function of τ. Using the GC analysis for the topology extraction of the simplest integrate-and-fire neuronal network of two neurons, we discuss behaviors of the GC value as a function of τ, which exhibits (i) oscillations, often vanishing at certain finite sampling interval lengths, (ii) the GC vanishes linearly as one uses finer and finer sampling. We show that these sampling effects can occur in both linear and non-linear dynamics: the GC value may vanish in the presence of true causal influence or become non-zero in the absence of causal influence. Without properly taking this issue into account, GC analysis may produce unreliable conclusions about causal influence when applied to empirical data. These sampling artifacts on the GC value greatly complicate the reliability of causal inference using the GC analysis, in general, and the validity of topology reconstruction for networks, in particular. We use idealized linear models to illustrate possible mechanisms underlying these phenomena and to gain insight into the general spectral structures that give rise to these sampling effects. Finally, we present an approach to circumvent these sampling artifacts to obtain reliable GC values.

  14. Analysis of Sampling Artifacts on the Granger Causality Analysis for Topology Extraction of Neuronal Dynamics

    Directory of Open Access Journals (Sweden)

    Douglas eZhou

    2014-07-01

    Full Text Available Granger causality (GC is a powerful method for causal inference for time series. In general, the GC value is computed using discrete time series sampled from continuous-time processes with a certain sampling interval length $tau$, emph{i.e.}, the GC value is a function of $tau$. Using the GC analysis for the topology extraction of the simplest integrate-and-fire neuronal network of two neurons, we discuss behaviors of the GC value as a function of $tau$, which exhibits (i oscillations, often vanishing at certain finite sampling interval lengths, (ii the GC vanishes linearly as one uses finer and finer sampling. We show that these sampling effects can occur in both linear and nonlinear dynamics: the GC value may vanish in the presence of true causal influence or become nonzero in the absence of causal influence. Without properly taking this issue into account, GC analysis may produce unreliable conclusions about causal influence when applied to empirical data. These sampling artifacts on the GC value greatly complicate the reliability of causal inference using the GC analysis, in general, and the validity of topology reconstruction for networks, in particular. We use idealized linear models to illustrate possible mechanisms underlying these phenomena and to gain insight into the general spectral structures that give rise to these sampling effects. Finally, we present an approach to circumvent these sampling artifacts to obtain reliable GC values.

  15. FEASIBILITY ANALYSIS OF SAFETY SIMULTANEOUS EXTRACTION OF COAL AND COALBED METHANE

    Institute of Scientific and Technical Information of China (English)

    Li Shugang

    2000-01-01

    Coalbed methane is of great value to extract and utilize in China, but the result of such research is not satisfied yet today.The paper analyzed the storage characteristics of coalbed methane, and then studied the behavior of coalbed methane using the key stratum theory of strata control.According to the features related to coalbed methane accumulations and delivery, the technique for safely simultaneous extraction of coal and coalbed methane is proposed, and benefit analysis is made too.

  16. Full Information Item Factor Analysis of the FCI

    Science.gov (United States)

    Hagedorn, Eric

    2010-02-01

    Traditional factor analytical methods, principal factors or principal components analysis, are inappropriate techniques for analyzing dichotomously scored responses to standardized tests or concept inventories because they lead to artifactual factors often referred to as ``difficulty factors.'' Full information item factor analysis (Bock, Gibbons and Muraki, 1988) based on Thurstone's multiple factor model and calculated using marginal maximum likelihood estimation, is an appropriate technique for such analyses. Force Concept Inventory (Hestenes, Wells and Swackhamer, 1992) data from 1582 university students completing an introductory physics course, was analyzed using the full information item factor analysis software TESTFACT v. 4. Analyzing the statistical significance of successive factors added to the model, using chi-squared statistics, led to a six factor model interpretable in terms of the conceptual dimensions of the FCI. )

  17. Early fault feature extraction of rolling bearing based on ICD and tunable Q-factor wavelet transform

    Science.gov (United States)

    Li, Yongbo; Liang, Xihui; Xu, Minqiang; Huang, Wenhu

    2017-03-01

    When a fault occurs on bearings, the measured bearing fault signals contain both high Q-factor oscillation component and low Q-factor periodic impact component. TQWT is the improvement of the traditional single Q-factor wavelet transform, which is very suitable for separating the low Q-factor component from the high Q-factor component. However, the accuracy of its decomposition heavily depended on the selection of Q-factors. There is no reported simple but effective method to select the Q-factors with enough accuracy. This study aims to develop a strategy to diagnostic the early fault of rolling bearings. In this paper, a characteristic frequency ratio (CFR) is used to optimize Q-factors of TQWT (OTQWT). However, directly application of OTQWT is difficult to extract fault signatures at early stage due to the weak fault symptoms and strong noise. A strategy of combination of intrinsic characteristic-scale decomposition (ICD) and TQWT is proposed. ICD owns significant advantages on computation efficiency and alleviation of mode mixing. The effectiveness of the proposed strategy is tested with both simulated and experimental vibration signals. Meanwhile, comparisons are conducted between the proposed method and other methods like: envelope demodulation and EEMD-TQWT. Results show that the proposed method has superior performance in extracting fault features of defective bearings at an early stage.

  18. Analysis of Factors Affecting the Quality of an E-commerce Website Using Factor Analysis

    Directory of Open Access Journals (Sweden)

    Saurabh Mishra

    2014-12-01

    Full Text Available The purpose of this study is to identify factors which affect the quality and effectiveness of an e commerce website which also majorly affect customer satisfaction and ultimately customer retention and loyalty. This research paper examines a set of 23 variables and integrates them into 4 factors which affect the quality of a website. An online questionnaire survey was conducted to generate statistics regarding the preferences of the e-commerce website users.The 23 variables taken from customer survey are generalized into 4 major factors using exploratory factor analysis which are content, navigation, services and interface design. The research majorly consists of the responses of students between the age group of 18-25 years and considers different B2C commercial websites. Identified variables are important with respect to the current competition in the market as service of an e-commerce website also play a major role in ensuring customer satisfaction. Further research in this domain can be done for websites’ version for mobile devices.

  19. Liquid membrane extraction techniques for trace metal analysis and speciation in environmental and biological matrices

    Energy Technology Data Exchange (ETDEWEB)

    Ndungu, Kuria

    1999-04-01

    In this thesis, liquid-membrane-based methods for the analysis of trace metal species in samples of environmental and biological origin were developed. By incorporating extracting reagents in the membrane liquid, trace metal ions were selectively separated from humic-rich natural waters and urine samples, prior to their determination using various instrumental techniques. The extractions were performed in closed flow systems thus allowing easy automation of both the sample clean-up and enrichment. An acidic organophosphorus reagent (DEHPA) and a basic tetraalkylammonium reagent (Aliquat-336) were used as extractants in the membrane liquid to selectively extract and enrich cationic and anionic metal species respectively. A speciation method for chromium species was developed that allowed the determination of cationic Cr(III) species and anionic CR(VI) species in natural water samples without the need of a chromatographic separation step prior to their detection. SLM was also coupled on-line to potentiometric stripping analysis providing a fast and sensitive method for analysis of Pb in urine samples. A microporous membrane liquid-liquid extraction (MMLLE) method was developed for the determination of organotin compounds in natural waters that reduced the number of manual steps involved in the LLE of organotin compounds prior to their CC separation. Clean extracts obtained after running unfiltered humic-rich river water samples through the MMLLE flow system allowed selective determination of all the organotin compounds in a single run using GC-MS in the selected ion monitoring mode (SIM) 171 refs, 9 figs, 4 tabs

  20. Composition analysis and antioxidant properties of black garlic extract.

    Science.gov (United States)

    Lu, Xiaoming; Li, Ningyang; Qiao, Xuguang; Qiu, Zhichang; Liu, Pengli

    2017-04-01

    Black garlic produced from fresh garlic under controlled high temperature and humidity has strong antioxidant properties. To determine these compounds, five fractions (from F1 to F5) were separated and purified by elution with chloroform:methanol at different ratios (8:1, 6:1, 4:1, 2:1, and 0:1; v/v). The antioxidant activity of each fraction was analyzed. The results showed that F3 and F4 had higher phenolic contents and stronger 2,2-diphenyl-2-picrylhydrazyl radical scavenging activity than the others. Seven purified individual components were further separated using semipreparation high-performance liquid chromatography from these two intensely antioxidant fractions (F3 and F4), their structures were elucidated by high-performance liquid chromatography coupled to diode array detection, electrospray ionization, mass spectrometry, (1)H nuclear magnetic resonance, and (13)C nuclear magnetic resonance spectrometry. Three compounds including adenosine, uridine, and 2-acetylpyrrole were first identified in black garlic, except for 5-hydroxymethylfurfural, (1S, 3S)-1-methyl-1,2,3,4-tetrahydro-β-carboline-3-carboxylic acid, and (1R, 3S)-1-methyl-1,2,3,4-tetrahydro-β-carboline-3-carboxylic acid. The cellular antioxidant activities of uridine, adenosine, carboline alkaloids, 5-hydroxymethylfurfural, and ethyl acetate extracts were consistent with the results of in vitro experimental antioxidant properties. The results provide useful information for understanding the health benefits of black garlic products. Copyright © 2016. Published by Elsevier B.V.

  1. Exploring Technostress: Results of a Large Sample Factor Analysis

    OpenAIRE

    Steponas Jonušauskas; Agota Giedre Raisiene

    2016-01-01

    With reference to the results of a large sample factor analysis, the article aims to propose the frame examining technostress in a population. The survey and principal component analysis of the sample consisting of 1013 individuals who use ICT in their everyday work was implemented in the research. 13 factors combine 68 questions and explain 59.13 per cent of the answers dispersion. Based on the factor analysis, questionnaire was reframed and prepared to reasonably analyze the respondents’ an...

  2. Identification of noise in linear data sets by factor analysis

    Energy Technology Data Exchange (ETDEWEB)

    Roscoe, B.A.; Hopke, Ph.K. (Illinois Univ., Urbana (USA))

    1982-01-01

    A technique which has the ability to identify bad data points, after the data has been generated, is classical factor analysis. The ability of classical factor analysis to identify two different types of data errors make it ideally suited for scanning large data sets. Since the results yielded by factor analysis indicate correlations between parameters, one must know something about the nature of the data set and the analytical techniques used to obtain it to confidentially isolate errors.

  3. Effect Factors of Liquid Scintillation Analysis

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    <正>Over the past decades, the liquid scintillation analysis (LSA) technique remains one of the most popular experimental tools used for the quantitative analysis of radionuclide, especially low-energy β

  4. Effects of extraction methods and factors on leaching of metals from recycled concrete aggregates.

    Science.gov (United States)

    Bestgen, Janile O; Cetin, Bora; Tanyu, Burak F

    2016-07-01

    Leaching of metals (calcium (Ca), chromium (Cr), copper, (Cu), iron (Fe), and zinc (Zn)) of recycled concrete aggregates (RCAs) were investigated with four different leachate extraction methods (batch water leach tests (WLTs), toxicity leaching procedure test (TCLP), synthetic precipitation leaching procedure test (SPLP), and pH-dependent leach tests). WLTs were also used to perform a parametric study to evaluate factors including (i) effects of reaction time, (ii) atmosphere, (iii) liquid-to-solid (L/S) ratio, and (iv) particle size of RCA. The results from WLTs showed that reaction time and exposure to atmosphere had impact on leaching behavior of metals. An increase in L/S ratio decreased the effluent pH and all metal concentrations. Particle size of the RCA had impact on some metals but not all. Comparison of the leached concentrations of metals from select RCA samples with WLT method to leached concentrations from TCLP and SPLP methods revealed significant differences. For the same RCA samples, the highest metal concentrations were obtained with TCLP method, followed by WLT and SPLP methods. However, in all tests, the concentrations of all four (Cr, Cu, Fe, and Zn) metals were below the regulatory limits determined by EPA MCLs in all tests with few exceptions. pH-dependent batch water leach tests revealed that leaching pattern for Ca is more cationic whereas for other metals showed more amphoteric. The results obtained from the pH-dependent tests were evaluated with geochemical modeling (MINTEQA2) to estimate the governing leaching mechanisms for different metals. The results indicated that the releases of the elements were solubility-controlled except Cr.

  5. Streamlined Membrane Proteome Preparation for Shotgun Proteomics Analysis with Triton X-100 Cloud Point Extraction and Nanodiamond Solid Phase Extraction

    Directory of Open Access Journals (Sweden)

    Minh D. Pham

    2016-05-01

    Full Text Available While mass spectrometry (MS plays a key role in proteomics research, characterization of membrane proteins (MP by MS has been a challenging task because of the presence of a host of interfering chemicals in the hydrophobic protein extraction process, and the low protease digestion efficiency. We report a sample preparation protocol, two-phase separation with Triton X-100, induced by NaCl, with coomassie blue added for visualizing the detergent-rich phase, which streamlines MP preparation for SDS-PAGE analysis of intact MP and shot-gun proteomic analyses. MP solubilized in the detergent-rich milieu were then sequentially extracted and fractionated by surface-oxidized nanodiamond (ND at three pHs. The high MP affinity of ND enabled extensive washes for removal of salts, detergents, lipids, and other impurities to ensure uncompromised ensuing purposes, notably enhanced proteolytic digestion and down-stream mass spectrometric (MS analyses. Starting with a typical membranous cellular lysate fraction harvested with centrifugation/ultracentrifugation, MP purities of 70%, based on number (not weight of proteins identified by MS, was achieved; the weight-based purity can be expected to be much higher.

  6. Application of Parallel Factor Analysis (PARAFAC to Electrophysiological Data

    Directory of Open Access Journals (Sweden)

    Sarah Katharina eSchmitz

    2015-01-01

    Full Text Available The identification of important features in multi-electrode recordings requires the decomposition of data in order to disclose relevant features and to offer a clear graphical representation. This can be a demanding task. Parallel Factor Analysis (PARAFAC; Hitchcock, 1927; Carrol & Chang, 1970; Harshman, 1970 is a method to decompose multi-dimensional arrays in order to focus on the features of interest, and provides a distinct illustration of the results. We applied PARAFAC to analyse spatio-temporal patterns in the functional connectivity between neurons, as revealed in their spike trains recorded in cat primary visual cortex (area 18. During these recordings we reversibly deactivated feedback connections from higher visual areas in the pMS (posterior middle suprasylvian cortex in order to study the impact of these top-down signals. Cross correlation was computed for every possible pair of the electrodes in the electrode array. PARAFAC was then used to reveal the effects of time, stimulus, and deactivation condition on the correlation patterns. Our results show that PARAFAC is able to reliably extract changes in correlation strength for different experimental conditions and display the relevant features. Thus, PARAFAC proves to be well-suited for the use in the context of electrophysiological (action potential recordings.

  7. Application of Parallel Factor Analysis (PARAFAC) to electrophysiological data.

    Science.gov (United States)

    Schmitz, S Katharina; Hasselbach, Philipp P; Ebisch, Boris; Klein, Anja; Pipa, Gordon; Galuske, Ralf A W

    2014-01-01

    The identification of important features in multi-electrode recordings requires the decomposition of data in order to disclose relevant features and to offer a clear graphical representation. This can be a demanding task. Parallel Factor Analysis (PARAFAC; Hitchcock, 1927; Carrol and Chang, 1970; Harshman, 1970) is a method to decompose multi-dimensional arrays in order to focus on the features of interest, and provides a distinct illustration of the results. We applied PARAFAC to analyse spatio-temporal patterns in the functional connectivity between neurons, as revealed in their spike trains recorded in cat primary visual cortex (area 18). During these recordings we reversibly deactivated feedback connections from higher visual areas in the pMS (posterior middle suprasylvian) cortex in order to study the impact of these top-down signals. Cross correlation was computed for every possible pair of the 16 electrodes in the electrode array. PARAFAC was then used to reveal the effects of time, stimulus, and deactivation condition on the correlation patterns. Our results show that PARAFAC is able to reliably extract changes in correlation strength for different experimental conditions and display the relevant features. Thus, PARAFAC proves to be well-suited for the use in the context of electrophysiological (action potential) recordings.

  8. Extraction of DNA by magnetic ionic liquids: tunable solvents for rapid and selective DNA analysis.

    Science.gov (United States)

    Clark, Kevin D; Nacham, Omprakash; Yu, Honglian; Li, Tianhao; Yamsek, Melissa M; Ronning, Donald R; Anderson, Jared L

    2015-02-03

    DNA extraction represents a significant bottleneck in nucleic acid analysis. In this study, hydrophobic magnetic ionic liquids (MILs) were synthesized and employed as solvents for the rapid and efficient extraction of DNA from aqueous solution. The DNA-enriched microdroplets were manipulated by application of a magnetic field. The three MILs examined in this study exhibited unique DNA extraction capabilities when applied toward a variety of DNA samples and matrices. High extraction efficiencies were obtained for smaller single-stranded and double-stranded DNA using the benzyltrioctylammonium bromotrichloroferrate(III) ([(C8)3BnN(+)][FeCl3Br(-)]) MIL, while the dicationic 1,12-di(3-hexadecylbenzimidazolium)dodecane bis[(trifluoromethyl)sulfonyl]imide bromotrichloroferrate(III) ([(C16BnIM)2C12(2+)][NTf2(-), FeCl3Br(-)]) MIL produced higher extraction efficiencies for larger DNA molecules. The MIL-based method was also employed for the extraction of DNA from a complex matrix containing albumin, revealing a competitive extraction behavior for the trihexyl(tetradecyl)phosphonium tetrachloroferrate(III) ([P6,6,6,14(+)][FeCl4(-)]) MIL in contrast to the [(C8)3BnN(+)][FeCl3Br(-)] MIL, which resulted in significantly less coextraction of albumin. The MIL-DNA method was employed for the extraction of plasmid DNA from bacterial cell lysate. DNA of sufficient quality and quantity for polymerase chain reaction (PCR) amplification was recovered from the MIL extraction phase, demonstrating the feasibility of MIL-based DNA sample preparation prior to downstream analysis.

  9. Extracting signals robust to electrode number and shift for online simultaneous and proportional myoelectric control by factorization algorithms.

    Science.gov (United States)

    Muceli, Silvia; Jiang, Ning; Farina, Dario

    2014-05-01

    Previous research proposed the extraction of myoelectric control signals by linear factorization of multi-channel electromyogram (EMG) recordings from forearm muscles. This paper further analyses the theoretical basis for dimensionality reduction in high-density EMG signals from forearm muscles. Moreover, it shows that the factorization of muscular activation patterns in weights and activation signals by non-negative matrix factorization (NMF) is robust with respect to the channel configuration from where the EMG signals are obtained. High-density surface EMG signals were recorded from the forearm muscles of six individuals. Weights and activation signals extracted offline from 10 channel configurations with varying channel numbers (6, 8, 16, 192 channels) were highly similar. Additionally, the method proved to be robust against electrode shifts in both transversal and longitudinal direction with respect to the muscle fibers. In a second experiment, six subjects directly used the activation signals extracted from high-density EMG for online goal-directed control tasks involving simultaneous and proportional control of two degrees-of-freedom of the wrist. The synergy weights for this control task were extracted from a reference configuration and activation signals were calculated online from the reference configuration as well as from the two shifted configurations, simulating electrode shift. Despite the electrode shift, the task completion rate, task completion time, and execution efficiency were generally not statistically different among electrode configurations. Online performances were also mostly similar when using either 6, 8, or 16 EMG channels. The robustness of the method to the number and location of channels, proved both offline and online, indicates that EMG signals recorded from forearm muscles can be approximated as linear instantaneous mixtures of activation signals and justifies the use of linear factorization algorithms for extracting, in a

  10. Topology analysis of social networks extracted from literature.

    Science.gov (United States)

    Waumans, Michaël C; Nicodème, Thibaut; Bersini, Hugues

    2015-01-01

    In a world where complex networks are an increasingly important part of science, it is interesting to question how the new reading of social realities they provide applies to our cultural background and in particular, popular culture. Are authors of successful novels able to reproduce social networks faithful to the ones found in reality? Is there any common trend connecting an author's oeuvre, or a genre of fiction? Such an analysis could provide new insight on how we, as a culture, perceive human interactions and consume media. The purpose of the work presented in this paper is to define the signature of a novel's story based on the topological analysis of its social network of characters. For this purpose, an automated tool was built that analyses the dialogs in novels, identifies characters and computes their relationships in a time-dependent manner in order to assess the network's evolution over the course of the story.

  11. Topology analysis of social networks extracted from literature.

    Directory of Open Access Journals (Sweden)

    Michaël C Waumans

    Full Text Available In a world where complex networks are an increasingly important part of science, it is interesting to question how the new reading of social realities they provide applies to our cultural background and in particular, popular culture. Are authors of successful novels able to reproduce social networks faithful to the ones found in reality? Is there any common trend connecting an author's oeuvre, or a genre of fiction? Such an analysis could provide new insight on how we, as a culture, perceive human interactions and consume media. The purpose of the work presented in this paper is to define the signature of a novel's story based on the topological analysis of its social network of characters. For this purpose, an automated tool was built that analyses the dialogs in novels, identifies characters and computes their relationships in a time-dependent manner in order to assess the network's evolution over the course of the story.

  12. Large Scale Data Analysis and Knowledge Extraction in Communication Data

    Science.gov (United States)

    2017-03-31

    problem [11 ,12] Examples of important applications include characterizing potential candidates for viral marketing , finding members of criminal groups...network has a broad range of applications, such as monitoring gang activities, fraud detection, and improving performance of viral marketing . In this...Malik, Nomllllized cuts and image segmentation . Pattern Analysis and Machine Intelligence, IEEE Transactions on, 2000. 22(8): p. 888-905. [8] Wu

  13. Characterization of the key aroma compounds in pork soup stock by using an aroma extract dilution analysis.

    Science.gov (United States)

    Takakura, Yukiko; Osanai, Hiroki; Masuzawa, Takuya; Wakabayashi, Hidehiko; Nishimura, Toshihide

    2014-01-01

    The aroma extract dilution analysis of an extract prepared from pork stock and subsequent experiments led to the identification of 15 aroma-active compounds in the flavor dilution factor range of 64-2048. Omission experiments to select the most aroma-active compounds from the 15 odor compounds suggested acetol, octanoic acid, δ-decalactone, and decanoic acid as the main active compounds contributing to the aroma of pork stock. Aroma recombination, addition, and omission experiments of these four aroma compounds in taste-reconstituted pork stock showed that each compound had an individual aroma profile. A comparison of the overall aroma between this recombined mixture and pork stock showed strong similarity, suggesting that the key aroma compounds had been successfully identified.

  14. "Salting-out" concentration of phytoplankton pigment extracts previous to their analysis by HPLC

    Directory of Open Access Journals (Sweden)

    José Luis Garrido

    2014-04-01

    The recoveries of different pigments varied depending on their chemical nature and the degree of enrichment of the extract. Carotenoids and non-polar chlorophylls were recovered above 85 % with 5M saline solutions, while the recovery of acidic clorophylls (c3 and c2 decreased with enrichment factors.

  15. Multi-Scale Analysis Based Curve Feature Extraction in Reverse Engineering

    Institute of Scientific and Technical Information of China (English)

    YANG Hongjuan; ZHOU Yiqi; CHEN Chengjun; ZHAO Zhengxu

    2006-01-01

    A sectional curve feature extraction algorithm based on multi-scale analysis is proposed for reverse engineering. The algorithm consists of two parts: feature segmentation and feature classification. In the first part, curvature scale space is applied to multi-scale analysis and original feature detection. To obtain the primary and secondary curve primitives, feature fusion is realized by multi-scale feature detection information transmission. In the second part: projection height function is presented based on the area of quadrilateral, which improved criterions of sectional curve feature classification. Results of synthetic curves and practical scanned sectional curves are given to illustrate the efficiency of the proposed algorithm on feature extraction. The consistence between feature extraction based on multi-scale curvature analysis and curve primitives is verified.

  16. Liquid chromatography-mass spectrometry and chemometric analysis of Ricinus communis extracts for cultivar identification.

    Science.gov (United States)

    Ovenden, Simon P B; Pigott, Eloise J; Rochfort, Simone; Bourne, David J

    2014-01-01

    Seeds of Ricinus communis contain the toxic protein ricin, a 64 kD heterodimeric type II ribosome-inactivating protein that has been used in several high-profile poisoning incidents. The ability to determine which cultivar the toxin was isolated from via an LC-MS method would be of significant use to law enforcement and forensic agencies. To analyse via LC-MS and chemometrics (principal components analysis (PCA), orthogonal partial-least-squares discriminant analysis (OPLS-DA)) extracts of R. communis to identify compounds specific to a particular cultivar. Seeds from eight specimens of six cultivars of R. communis ('carmencita', 'dehradun', 'gibsonii', 'impala', 'sanguineus' and 'zanzibariensis') were extracted using a standard methodology. These extracts were analysed by LC-MS then subjected to chemometric analysis (PCA and OPLS-DA). Identified compounds of importance were subjected to high-resolution Fourier transform (HRFT) MS and MS/MS to elucidate their structures. This analysis identified 17 ions as potential cultivar determinators. Through accurate mass measurement and MS/MS, molecular formulae for 13 ions were determined, including two known and 11 new peptides. Unique ions in extracts of 'carmencita', 'dehradun', 'gibsonii', 'impala' and 'zanzibariensis' were identified that would allow an individual cultivar to be distinguished from other cultivars in this study. Although 'sanguineus' extracts contained no unique compounds, a unique LC-MS profile would allow for cultivar assignment. Copyright © 2014 John Wiley & Sons, Ltd.

  17. Analysis of Usnea fasciata crude extracts with antineoplastic activity.

    Science.gov (United States)

    Periera, E C; Nascimento, S C; Lima, R C; Silva, N H; Oliveira, A F; Bandeira, E; Boitard, M; Beriel, H; Vicente, C; Legaz, M E

    1994-09-01

    Different fractions, isolated from the lichen Usnea fasciata, were analyzed by PC, TLC, and RP-HPLC. Analysis of the organic phases, mainly containing phenolics, revealed that usnic acid is the main product from secondary metabolites, whereas the polysaccharides isolichenin and raffinose are the most abundant water-soluble carbohydrates. Fractions containing usnic acid, as well as those containing isolichenin, showed moderate activity against sarcoma 180 and Ehrlich tumor cells. High antitumoral activity, near 90% inhibition, was found associated with the fraction containing raffinose.

  18. Comparison of DNA extraction methods in analysis of salivary bacterial communities.

    Science.gov (United States)

    Lazarevic, Vladimir; Gaïa, Nadia; Girard, Myriam; François, Patrice; Schrenzel, Jacques

    2013-01-01

    Culture-independent high-throughput sequencing-based methods are widely used to study bacterial communities. Although these approaches are superior to traditional culture-based methods, they introduce bias at the experimental and bioinformatics levels. We assessed the diversity of the human salivary microbiome by pyrosequencing of the 16S rDNA V1-3 amplicons using metagenomic DNA extracted by two different protocols: a simple proteinase K digestion without a subsequent DNA clean-up step, and a bead-beating mechanical lysis protocol followed by column DNA purification. A high degree of congruence was found between the two extraction methods, most notably in regard to the microbial community composition. The results showed that for a given bioinformatics pipeline, all the taxa with an average proportion >0.12% in samples processed using one extraction method were also detected in samples extracted using the other method. The same taxa tended to be abundant and frequent for both extraction methods. The relative abundance of sequence reads assigned to the phyla Actinobacteria, Spirochaetes, TM7, Synergistetes, and Tenericutes was significantly higher in the mechanically-treated samples than in the enzymatically-treated samples, whereas the phylum Firmicutes showed the opposite pattern. No significant differences in diversity indices were found between the extraction methods, although the mechanical lysis method revealed higher operational taxonomic unit richness. Differences between the extraction procedures outweighed the variations due to the bioinformatics analysis pipelines used.

  19. Comparison of DNA extraction methods in analysis of salivary bacterial communities.

    Directory of Open Access Journals (Sweden)

    Vladimir Lazarevic

    Full Text Available Culture-independent high-throughput sequencing-based methods are widely used to study bacterial communities. Although these approaches are superior to traditional culture-based methods, they introduce bias at the experimental and bioinformatics levels. We assessed the diversity of the human salivary microbiome by pyrosequencing of the 16S rDNA V1-3 amplicons using metagenomic DNA extracted by two different protocols: a simple proteinase K digestion without a subsequent DNA clean-up step, and a bead-beating mechanical lysis protocol followed by column DNA purification. A high degree of congruence was found between the two extraction methods, most notably in regard to the microbial community composition. The results showed that for a given bioinformatics pipeline, all the taxa with an average proportion >0.12% in samples processed using one extraction method were also detected in samples extracted using the other method. The same taxa tended to be abundant and frequent for both extraction methods. The relative abundance of sequence reads assigned to the phyla Actinobacteria, Spirochaetes, TM7, Synergistetes, and Tenericutes was significantly higher in the mechanically-treated samples than in the enzymatically-treated samples, whereas the phylum Firmicutes showed the opposite pattern. No significant differences in diversity indices were found between the extraction methods, although the mechanical lysis method revealed higher operational taxonomic unit richness. Differences between the extraction procedures outweighed the variations due to the bioinformatics analysis pipelines used.

  20. A Comparative Analysis of the 'Green' Techniques Applied for Polyphenols Extraction from Bioresources.

    Science.gov (United States)

    Talmaciu, Adina Iulia; Volf, Irina; Popa, Valentin I

    2015-11-01

    From all the valuable biomass extractives, polyphenols are a widespread group of secondary metabolites found in all plants, representing the most desirable phytochemicals due to their potential to be used as additives in food industry, cosmetics, medicine, and others fields. At present, there is an increased interest to recover them from plant of spontaneous flora, cultivated plant, and wastes resulted in agricultural and food industry. That is why many efforts have been made to provide a highly sensitive, efficiently, and eco-friendly methods, for the extraction of polyphenols, according to the green chemistry and sustainable development concepts. Many extraction procedures are known with advantages and disadvantages. From these reasons, the aim of this article is to provide a comparative analysis regarding technical and economical aspects related to the most innovative extraction techniques studied in the last time: microwave-assisted extraction (MAE), supercritical fluid extraction (SFE), and ultrasound-assisted extraction (UAE). Copyright © 2015 Verlag Helvetica Chimica Acta AG, Zürich.

  1. Determination of terpenoid content in pine by organic solvent extraction and fast-GC analysis

    Directory of Open Access Journals (Sweden)

    Anne Elizabeth Harman-Ware

    2016-01-01

    Full Text Available Terpenoids, naturally occurring compounds derived from isoprene units present in pine oleoresin, are a valuable source of chemicals used in solvents, fragrances, flavors and have shown potential use as a biofuel. This paper describes a method to extract and analyze the terpenoids present in loblolly pine saplings and pine lighter wood. Various extraction solvents were tested over different times and temperatures. Samples were analyzed by pyrolysis-molecular beam mass spectrometry before and after extractions to monitor the extraction efficiency. The pyrolysis studies indicated that the optimal extraction method used a 1:1 hexane/acetone solvent system at 22°C for 1 h. Extracts from the hexane/acetone experiments were analyzed using a low thermal mass modular accelerated column heater for fast-GC/FID analysis. The most abundant terpenoids from the pine samples were quantified, using standard curves, and included the monoterpenes, α- and β- pinene, camphene and δ-carene. Sesquiterpenes analyzed included caryophyllene, humulene and α-bisabolene. Diterpenoid resin acids were quantified in derivatized extractions, including pimaric, isopimaric, levopimaric, palustric, dehydroabietic, abietic and neoabietic acids.

  2. Development and validation of an extraction method for the analysis of perfluoroalkyl substances in human hair.

    Science.gov (United States)

    Kim, Da-Hye; Oh, Jeong-Eun

    2017-02-16

    Human hair has many advantages as a non-invasive sample; however, analytical methods for detecting perfluoroalkyl substances (PFASs) in human hair are still in the development stage. Therefore, the aim of this study was to develop and validate a method for monitoring 11 PFASs in human hair. Solid-phase extraction (SPE), ion-pairing extraction (IPE), a combined method (SPE+IPE) and solvent extraction with ENVI-carb clean-up were compared to develop an optimal extraction method using two types of hair sample (powder and piece forms). Analysis of PFASs was performed using liquid chromatography and tandem mass spectrometry. Among the four different extraction procedures, the SPE method using powdered hair showed the best extraction efficiency and recoveries ranged from 85.8 to 102%. The method detection limits for the SPE method were 0.114-0.796 ng/g and good precision (below 10%) and accuracy (66.4-110%) were obtained. In light of these results, SPE is considered the optimal method for PFAS extraction from hair. It was also successfully used to detect PFASs in human hair samples.

  3. PHYTOCHEMICAL, ANTIMICROBIAL AND ANTI-ADHERENCE ANALYSIS OF PLANT AND AYURVEDIC EXTRACTS

    Directory of Open Access Journals (Sweden)

    Kinjal Shah

    2015-07-01

    Full Text Available The incessant and vital need to discover new antimicrobial compounds with diverse chemical structures and novel mode of action is stimulated by the increasing failure of chemotherapeutics and expanded antibiotic resistance exhibited by pathogenic agents. In the present research work, antimicrobial activity of few plant extracts and ayurvedic samples were screened against bacteria. Phytochemical analysis of active plant extracts showed the presence of triterpenes, glycosides and flavonoids. Both aqueous and acetone extracts of Holoptelia integrifolia leaf and Barringtonia acutangula flower; and methanolic extract of Glycyrrhiza glabra and Meera powder exhibited activity against S. aureus. Aqueous mortar pestle and soxhlet extracts of B. acutangula flower exhibited activity against both P. aeruginosa and E. coli. Further, the ability to adhere and build biofilm was assessed in few biofilm formers at sub-MIC concentrations using the Microtiter plate assay and the Coverslip assay. Aqueous soxhlet and mortar pestle extract of B. acutangula flower and acetone overnight extract of H. integrifolia leaf exhibited antibiofilm activity against these organisms.

  4. DNA is a co-factor for its own replication in Xenopus egg extracts

    NARCIS (Netherlands)

    Lebofsky, Ronald; van Oijen, Antoine M.; Walter, Johannes C.

    Soluble Xenopus egg extracts efficiently replicate added plasmids using a physiological mechanism, and thus represent a powerful system to understand vertebrate DNA replication. Surprisingly, DNA replication in this system is highly sensitive to plasmid concentration, being undetectable below

  5. DNA is a co-factor for its own replication in Xenopus egg extracts

    NARCIS (Netherlands)

    Lebofsky, Ronald; van Oijen, Antoine M.; Walter, Johannes C.

    2011-01-01

    Soluble Xenopus egg extracts efficiently replicate added plasmids using a physiological mechanism, and thus represent a powerful system to understand vertebrate DNA replication. Surprisingly, DNA replication in this system is highly sensitive to plasmid concentration, being undetectable below simila

  6. DNA is a co-factor for its own replication in Xenopus egg extracts

    NARCIS (Netherlands)

    Lebofsky, Ronald; van Oijen, Antoine M.; Walter, Johannes C.

    2011-01-01

    Soluble Xenopus egg extracts efficiently replicate added plasmids using a physiological mechanism, and thus represent a powerful system to understand vertebrate DNA replication. Surprisingly, DNA replication in this system is highly sensitive to plasmid concentration, being undetectable below simila

  7. RFI detection by automated feature extraction and statistical analysis

    Science.gov (United States)

    Winkel, B.; Kerp, J.; Stanko, S.

    2007-01-01

    In this paper we present an interference detection toolbox consisting of a high dynamic range Digital Fast-Fourier-Transform spectrometer (DFFT, based on FPGA-technology) and data analysis software for automated radio frequency interference (RFI) detection. The DFFT spectrometer allows high speed data storage of spectra on time scales of less than a second. The high dynamic range of the device assures constant calibration even during extremely powerful RFI events. The software uses an algorithm which performs a two-dimensional baseline fit in the time-frequency domain, searching automatically for RFI signals superposed on the spectral data. We demonstrate, that the software operates successfully on computer-generated RFI data as well as on real DFFT data recorded at the Effelsberg 100-m telescope. At 21-cm wavelength RFI signals can be identified down to the 4σ_rms level. A statistical analysis of all RFI events detected in our observational data revealed that: (1) mean signal strength is comparable to the astronomical line emission of the Milky Way, (2) interferences are polarised, (3) electronic devices in the neighbourhood of the telescope contribute significantly to the RFI radiation. We also show that the radiometer equation is no longer fulfilled in presence of RFI signals.

  8. RFI detection by automated feature extraction and statistical analysis

    CERN Document Server

    Winkel, B; Stanko, S; Winkel, Benjamin; Kerp, Juergen; Stanko, Stephan

    2006-01-01

    In this paper we present an interference detection toolbox consisting of a high dynamic range Digital Fast-Fourier-Transform spectrometer (DFFT, based on FPGA-technology) and data analysis software for automated radio frequency interference (RFI) detection. The DFFT spectrometer allows high speed data storage of spectra on time scales of less than a second. The high dynamic range of the device assures constant calibration even during extremely powerful RFI events. The software uses an algorithm which performs a two-dimensional baseline fit in the time-frequency domain, searching automatically for RFI signals superposed on the spectral data. We demonstrate, that the software operates successfully on computer-generated RFI data as well as on real DFFT data recorded at the Effelsberg 100-m telescope. At 21-cm wavelength RFI signals can be identified down to the 4-sigma level. A statistical analysis of all RFI events detected in our observational data revealed that: (1) mean signal strength is comparable to the a...

  9. Automatic knowledge extraction in sequencing analysis with multiagent system and grid computing.

    Science.gov (United States)

    González, Roberto; Zato, Carolina; Benito, Rocío; Bajo, Javier; Hernández, Jesús M; De Paz, Juan F; Vera, Vicente; Corchado, Juan M

    2012-07-24

    Advances in bioinformatics have contributed towards a significant increase in available information. Information analysis requires the use of distributed computing systems to best engage the process of data analysis. This study proposes a multiagent system that incorporates grid technology to facilitate distributed data analysis by dynamically incorporating the roles associated to each specific case study. The system was applied to genetic sequencing data to extract relevant information about insertions, deletions or polymorphisms.

  10. In vitro prebiotic effects and quantitative analysis of Bulnesia sarmienti extract

    Directory of Open Access Journals (Sweden)

    Md Ahsanur Reza

    2016-10-01

    Full Text Available Prebiotics are used to influence the growth, colonization, survival, and activity of probiotics, and enhance the innate immunity, thus improving the health status of the host. The survival, growth, and activity of probiotics are often interfered with by intrinsic factors and indigenous microbes in the gastrointestinal tract. In this study, Bulnesia sarmienti aqueous extract (BSAE was evaluated for the growth-promoting activity of different strains of Lactobacillus acidophilus, and a simple, precise, cost-effective high-performance liquid chromatography (HPLC method was developed and validated for the determination of active prebiotic ingredients in the extract. Different strains of L. acidophilus (probiotic were incubated in de Man, Rogosa, and Sharpe (MRS medium with the supplementation of BSAE in a final concentration of 0.0%, 1.0%, and 3.0% (w/v as the sole carbon source. Growth of the probiotics was determined by measuring the pH changes and colony-forming units (CFU/mL using the microdilution method for a period of 24 hours. The HPLC method was designed by optimizing mobile-phase composition, flow rate, column temperature, and detection wavelength. The method was validated according to the requirements of a new method, including accuracy, precision, linearity, limit of detection, limit of quantitation, and specificity. The major prebiotic active ingredients in BSAE were determined using the validated HPLC method. The rapid growth rate of different strains of L. acidophilus was observed in growth media with BSAE, whereas the decline of pH values of cultures varied in different strains of probiotics depending on the time of culture. (+-Catechin and (−-epicatechin were identified on the basis of their retention time, absorbance spectrum, and mass spectrometry fragmentation pattern. The developed method met the limit of all validation parameters. The prebiotic active components, (+-catechin and (−-epicatechin, were quantified as 1.27% and 0

  11. GC-MS analysis of bioactive compounds in the methanol extract of Clerodendrum viscosum leaves

    Directory of Open Access Journals (Sweden)

    Pritipadma Panda

    2015-01-01

    Full Text Available Background: Clerodendrum viscosum is commonly found in India and Bangladesh. Previously, various parts of this plant were reported for treatment of different types of diseases and there was no report on GC-Ms analysis. Objective: To analyze and characterize the phytochemical compounds of methanol extract of Clerodendrum viscosum using GC-MS. Materials and Methods: The preliminary phytochemical screening of methanol extract was carried out according to standard procedures described in WHO guidelines. Various bioactive compounds of the extract were determined by GC-MS technique. Results: The presence of steroids, triterpenoids, alkaloids, saponins, flavonoids, tannins and carbohydrate was found on phytochemical screening of methanol extract of the leaves. The GC-MS analysis showed 16 peaks of different phytoconstituents namely acetamide,N,N-carbonylbis-, 4-Pyranone,2,3-dihydro-, alpha-D-Galactofuranoside, methyl 2,3,5,6-tetra-O-methyl-, Glycerin, Xylitol, N,N-Dimethylglycine, 4H-Pyran-4-one,2,3-dihydro-3, 5-dihydroxy-6-methyl-, Benzofuran,2,3-dihydro-, 5-Hydroxymethylfurfural, 2(1HPyrimidinone,1-methyl-, 2,4-Dihydroxy-5,6-dimethylpyrimidine, 3-Deoxy-d-mannoic lactone, 1,3-Methylene-d-arabitol, Orcinol, n-Hexadecanoic acid and Phenol,4,4′-(1-methyl ethylidene bis etc. Conclusion: The bioactive compounds present in the methanol extract of Clerodendrum viscosum suggest the application of this extract for the treatment of various diseases by the aborigine tribes.

  12. Capillary electrophoretic analysis of flavonoids in single-styled hawthorn (Crataegus monogyna Jacq.) ethanolic extracts.

    Science.gov (United States)

    Urbonaviciūte, A; Jakstas, V; Kornysova, O; Janulis, V; Maruska, A

    2006-04-21

    Flavonoids are an important group of natural compounds, which can prevent coronary heart disease and have antioxidant properties. Hawthorn is a well known and widely used medicinal plant due to its cardiotonic activity. Previous studies refer mostly to the HPLC analysis of the flavonoids: vitexin, quercetin, hyperoside, oligomeric procyanidins, which appear to be primarily responsible for the cardiac action of the plant. Aqueous ethanolic extracts of single-styled hawthorn (Crataegus monogyna Jacq., f.: Rosaceae Juss.) leaves and sprouts were analyzed by means of capillary zone electrophoresis (CZE). Influence of vegetation period on the extract qualitative composition and flavonoids quantities was evaluated. Sample preparation by extraction using different concentration of aqueous ethanol (40-96%, v/v) and the influence of extractant composition on the recovery of flavonoids are discussed in detail. The results obtained using CZE are compared to the results of spectrophotometric and HPLC analysis of the extracts. The effect of storage conditions of extracts (solar irradiation, temperature and duration) on degradation of flavonoids was investigated.

  13. Knee cartilage extraction and bone-cartilage interface analysis from 3D MRI data sets

    Science.gov (United States)

    Tamez-Pena, Jose G.; Barbu-McInnis, Monica; Totterman, Saara

    2004-05-01

    This works presents a robust methodology for the analysis of the knee joint cartilage and the knee bone-cartilage interface from fused MRI sets. The proposed approach starts by fusing a set of two 3D MR images the knee. Although the proposed method is not pulse sequence dependent, the first sequence should be programmed to achieve good contrast between bone and cartilage. The recommended second pulse sequence is one that maximizes the contrast between cartilage and surrounding soft tissues. Once both pulse sequences are fused, the proposed bone-cartilage analysis is done in four major steps. First, an unsupervised segmentation algorithm is used to extract the femur, the tibia, and the patella. Second, a knowledge based feature extraction algorithm is used to extract the femoral, tibia and patellar cartilages. Third, a trained user corrects cartilage miss-classifications done by the automated extracted cartilage. Finally, the final segmentation is the revisited using an unsupervised MAP voxel relaxation algorithm. This final segmentation has the property that includes the extracted bone tissue as well as all the cartilage tissue. This is an improvement over previous approaches where only the cartilage was segmented. Furthermore, this approach yields very reproducible segmentation results in a set of scan-rescan experiments. When these segmentations were coupled with a partial volume compensated surface extraction algorithm the volume, area, thickness measurements shows precisions around 2.6%

  14. Region of interest extraction based on multiscale visual saliency analysis for remote sensing images

    Science.gov (United States)

    Zhang, Yinggang; Zhang, Libao; Yu, Xianchuan

    2015-01-01

    Region of interest (ROI) extraction is an important component of remote sensing image processing. However, traditional ROI extraction methods are usually prior knowledge-based and depend on classification, segmentation, and a global searching solution, which are time-consuming and computationally complex. We propose a more efficient ROI extraction model for remote sensing images based on multiscale visual saliency analysis (MVS), implemented in the CIE L*a*b* color space, which is similar to visual perception of the human eye. We first extract the intensity, orientation, and color feature of the image using different methods: the visual attention mechanism is used to eliminate the intensity feature using a difference of Gaussian template; the integer wavelet transform is used to extract the orientation feature; and color information content analysis is used to obtain the color feature. Then, a new feature-competition method is proposed that addresses the different contributions of each feature map to calculate the weight of each feature image for combining them into the final saliency map. Qualitative and quantitative experimental results of the MVS model as compared with those of other models show that it is more effective and provides more accurate ROI extraction results with fewer holes inside the ROI.

  15. Feature Extraction Using Supervised Independent Component Analysis by Maximizing Class Distance

    Science.gov (United States)

    Sakaguchi, Yoshinori; Ozawa, Seiichi; Kotani, Manabu

    Recently, Independent Component Analysis (ICA) has been applied to not only problems of blind signal separation, but also feature extraction of patterns. However, the effectiveness of pattern features extracted by conventional ICA algorithms depends on pattern sets; that is, how patterns are distributed in the feature space. As one of the reasons, we have pointed out that ICA features are obtained by increasing only their independence even if the class information is available. In this context, we can expect that more high-performance features can be obtained by introducing the class information into conventional ICA algorithms. In this paper, we propose a supervised ICA (SICA) that maximizes Mahalanobis distance between features of different classes as well as maximize their independence. In the first experiment, two-dimensional artificial data are applied to the proposed SICA algorithm to see how maximizing Mahalanobis distance works well in the feature extraction. As a result, we demonstrate that the proposed SICA algorithm gives good features with high separability as compared with principal component analysis and a conventional ICA. In the second experiment, the recognition performance of features extracted by the proposed SICA is evaluated using the three data sets of UCI Machine Learning Repository. From the results, we show that the better recognition accuracy is obtained using our proposed SICA. Furthermore, we show that pattern features extracted by SICA are better than those extracted by only maximizing the Mahalanobis distance.

  16. Immunohistochemistry profiles of breast ductal carcinoma: factor analysis of digital image analysis data

    Directory of Open Access Journals (Sweden)

    Laurinavicius Arvydas

    2012-03-01

    Full Text Available Abstract Background Molecular studies of breast cancer revealed biological heterogeneity of the disease and opened new perspectives for personalized therapy. While multiple gene expression-based systems have been developed, current clinical practice is largely based upon conventional clinical and pathologic criteria. This gap may be filled by development of combined multi-IHC indices to characterize biological and clinical behaviour of the tumours. Digital image analysis (DA with multivariate statistics of the data opens new opportunities in this field. Methods Tissue microarrays of 109 patients with breast ductal carcinoma were stained for a set of 10 IHC markers (ER, PR, HER2, Ki67, AR, BCL2, HIF-1α, SATB1, p53, and p16. Aperio imaging platform with the Genie, Nuclear and Membrane algorithms were used for the DA. Factor analysis of the DA data was performed in the whole group and hormone receptor (HR positive subgroup of the patients (n = 85. Results Major factor potentially reflecting aggressive disease behaviour (i-Grade was extracted, characterized by opposite loadings of ER/PR/AR/BCL2 and Ki67/HIF-1α. The i-Grade factor scores revealed bimodal distribution and were strongly associated with higher Nottingham histological grade (G and more aggressive intrinsic subtypes. In HR-positive tumours, the aggressiveness of the tumour was best defined by positive Ki67 and negative ER loadings. High Ki67/ER factor scores were strongly associated with the higher G and Luminal B types, but also were detected in a set of G1 and Luminal A cases, potentially indicating high risk patients in these categories. Inverse relation between HER2 and PR expression was found in the HR-positive tumours pointing at differential information conveyed by the ER and PR expression. SATB1 along with HIF-1α reflected the second major factor of variation in our patients; in the HR-positive group they were inversely associated with the HR and BCL2 expression and represented

  17. Immunohistochemistry profiles of breast ductal carcinoma: factor analysis of digital image analysis data.

    Science.gov (United States)

    Laurinavicius, Arvydas; Laurinaviciene, Aida; Ostapenko, Valerijus; Dasevicius, Darius; Jarmalaite, Sonata; Lazutka, Juozas

    2012-03-16

    Molecular studies of breast cancer revealed biological heterogeneity of the disease and opened new perspectives for personalized therapy. While multiple gene expression-based systems have been developed, current clinical practice is largely based upon conventional clinical and pathologic criteria. This gap may be filled by development of combined multi-IHC indices to characterize biological and clinical behaviour of the tumours. Digital image analysis (DA) with multivariate statistics of the data opens new opportunities in this field. Tissue microarrays of 109 patients with breast ductal carcinoma were stained for a set of 10 IHC markers (ER, PR, HER2, Ki67, AR, BCL2, HIF-1α, SATB1, p53, and p16). Aperio imaging platform with the Genie, Nuclear and Membrane algorithms were used for the DA. Factor analysis of the DA data was performed in the whole group and hormone receptor (HR) positive subgroup of the patients (n = 85). Major factor potentially reflecting aggressive disease behaviour (i-Grade) was extracted, characterized by opposite loadings of ER/PR/AR/BCL2 and Ki67/HIF-1α. The i-Grade factor scores revealed bimodal distribution and were strongly associated with higher Nottingham histological grade (G) and more aggressive intrinsic subtypes. In HR-positive tumours, the aggressiveness of the tumour was best defined by positive Ki67 and negative ER loadings. High Ki67/ER factor scores were strongly associated with the higher G and Luminal B types, but also were detected in a set of G1 and Luminal A cases, potentially indicating high risk patients in these categories. Inverse relation between HER2 and PR expression was found in the HR-positive tumours pointing at differential information conveyed by the ER and PR expression. SATB1 along with HIF-1α reflected the second major factor of variation in our patients; in the HR-positive group they were inversely associated with the HR and BCL2 expression and represented the major factor of variation. Finally, we

  18. [Optimize the extraction process with supercritical CO2 fluid from lotus leaves by the uniform design and analysis on the chemical constituents by GC-MS].

    Science.gov (United States)

    Yin, Hui-jing; Qian, Yi-fan; Pu, Cun-hai

    2007-04-01

    To study the optimum parameters of the supercritical CO, fluid extraction of lotus leaves and chemical constituents of extractive matters. Supercritical CO2 fluid extraction condition was selected by uniform design. The extraction pressure, extraction temperature, extraction time were three factors in the experiment. GC-MS was applied for analyzing the extraction. The optimum condition were obtained: the extraction pressure was 26 Mpa, the extraction temperature was 40 degrees C, the extracion time was 90 minutes. The major constituent was 1H-Pyrrole-2-carboxaldehyde, 1-ethyl-in extractive matters. Uniform design can optimize the CO2 Supercritical Fluid Extraction process quickly and accuratly with satisfactory results.

  19. Cascaded Factor Analysis and Wavelet Transform Method for Tumor Classification Using Gene Expression Data

    Directory of Open Access Journals (Sweden)

    Jayakishan Meher

    2012-08-01

    Full Text Available Correlation between gene expression profiles to disease or different developmental stages of a cell through microarray data and its analysis has been a great deal in molecular biology. As the microarray data have thousands of genes and very few sample, thus efficient feature extraction and computational method development is necessary for the analysis. In this paper we have proposed an effective feature extraction method based on factor analysis (FA with discrete wavelet transform (DWT to detect informative genes. Radial basis function neural network (RBFNN classifier is used to efficiently predict the sample class which has a low complexity than other classifier. The potential of the proposed approach is evaluated through an exhaustive study by many benchmark datasets. The experimental results show that the proposed method can be a useful approach for cancer classification.

  20. [Fetal electrocardiogram extraction based on independent component analysis and quantum particle swarm optimizer algorithm].

    Science.gov (United States)

    Du, Yanqin; Huang, Hua

    2011-10-01

    Fetal electrocardiogram (FECG) is an objective index of the activities of fetal cardiac electrophysiology. The acquired FECG is interfered by maternal electrocardiogram (MECG). How to extract the fetus ECG quickly and effectively has become an important research topic. During the non-invasive FECG extraction algorithms, independent component analysis(ICA) algorithm is considered as the best method, but the existing algorithms of obtaining the decomposition of the convergence properties of the matrix do not work effectively. Quantum particle swarm optimization (QPSO) is an intelligent optimization algorithm converging in the global. In order to extract the FECG signal effectively and quickly, we propose a method combining ICA and QPSO. The results show that this approach can extract the useful signal more clearly and accurately than other non-invasive methods.

  1. Tissue extraction of DNA and RNA and analysis by the polymerase chain reaction.

    Science.gov (United States)

    Jackson, D P; Lewis, F A; Taylor, G R; Boylston, A W; Quirke, P

    1990-06-01

    Several DNA extraction techniques were quantitatively and qualitatively compared using both fresh and paraffin wax embedded tissue and their suitability investigated for providing DNA and RNA for the polymerase chain reaction (PCR). A one hour incubation with proteinase K was the most efficient DNA extraction procedure for fresh tissue. For paraffin wax embedded tissue a five day incubation with proteinase K was required to produce good yields of DNA. Incubation with sodium dodecyl sulphate produced very poor yields, while boiling produced 20% as much DNA as long enzyme digestion. DNA extracted by these methods was suitable for the PCR amplification of a single copy gene. Proteinase K digestion also produced considerable amounts of RNA which has previously been shown to be suitable for PCR analysis. A delay before fixation had no effect on the amount of DNA obtained while fixation in Carnoy's reagent results in a much better preservation of DNA than formalin fixation, allowing greater yields to be extracted.

  2. Automated Extraction of Archaeological Traces by a Modified Variance Analysis

    Directory of Open Access Journals (Sweden)

    Tiziana D'Orazio

    2015-03-01

    Full Text Available This paper considers the problem of detecting archaeological traces in digital aerial images by analyzing the pixel variance over regions around selected points. In order to decide if a point belongs to an archaeological trace or not, its surrounding regions are considered. The one-way ANalysis Of VAriance (ANOVA is applied several times to detect the differences among these regions; in particular the expected shape of the mark to be detected is used in each region. Furthermore, an effect size parameter is defined by comparing the statistics of these regions with the statistics of the entire population in order to measure how strongly the trace is appreciable. Experiments on synthetic and real images demonstrate the effectiveness of the proposed approach with respect to some state-of-the-art methodologies.

  3. FACTOR ANALYSIS OF THE ELKINS HYPNOTIZABILITY SCALE

    Science.gov (United States)

    Elkins, Gary; Johnson, Aimee K.; Johnson, Alisa J.; Sliwinski, Jim

    2015-01-01

    Assessment of hypnotizability can provide important information for hypnosis research and practice. The Elkins Hypnotizability Scale (EHS) consists of 12 items and was developed to provide a time-efficient measure for use in both clinical and laboratory settings. The EHS has been shown to be a reliable measure with support for convergent validity with the Stanford Hypnotic Susceptibility Scale, Form C (r = .821, p < .001). The current study examined the factor structure of the EHS, which was administered to 252 adults (51.3% male; 48.7% female). Average time of administration was 25.8 minutes. Four factors selected on the basis of the best theoretical fit accounted for 63.37% of the variance. The results of this study provide an initial factor structure for the EHS. PMID:25978085

  4. ANALYSIS OF EXTERNAL FACTORS AFFECTING THE PRICING

    Directory of Open Access Journals (Sweden)

    Irina A. Kiseleva

    2013-01-01

    Full Text Available The external factors influencing the process of formation of tariffs of commercial services are considered in the article. External environment is known to be very diverse and changeable. Currently, pricing has become one of the key processes of strategic development of a company. Pricing in the service sector, in turn, is highly susceptible to changes in the external environment. Its components directly or indirectly affect the market of services, changing it adopted economic processes. As a rule, firms providing services can’t influence the changes in external factors. However, the service market is very flexible, which enables businesses to reshape pricing strategy, to adapt it to the new environment.

  5. Screening for Antibacterial and Antioxidant Activities and Phytochemical Analysis of Oroxylum indicum Fruit Extracts

    Directory of Open Access Journals (Sweden)

    Patchima Sithisarn

    2016-04-01

    Full Text Available Oroxylum indicum, which is called Pheka in Thai, is a traditional Thai plant in the Bignoniaceae family with various ethnomedical uses such as as an astringent, an anti-inflammatory agent, an anti-bronchitic agent, an anti-helminthic agent and an anti-microbial agent. The young fruits of this plant have also been consumed as vegetables. However, there has been no report concerning its antibacterial activities, especially activities related to clinically isolated pathogenic bacteria and the in vitro antioxidant effects of this plant. Therefore, the extracts from O. indicum fruits and seeds collected from different provinces in Thailand were prepared by decoction and maceration with ethanol and determined for their in vitro antibacterial effects on two clinically isolated bacteria, Streptococcus suis and Staphylococcus intermedius, using disc diffusion assay. Ethanol extracts from O. indicum fruits collected from Nakorn Pathom province at the concentration of 1000 mg/mL exhibited intermediate antibacterial activity against S. intermedius with an inhibition zone of 15.11 mm. Moreover, it promoted moderate inhibitory effects on S. suis with an inhibition zone of 14.39 mm. The extracts prepared by maceration with ethanol promoted higher antibacterial activities than those prepared with water. The ethanol extract from the seeds of this plant, purchased in Bangkok, showed stronger in vitro antioxidant activities than the other extracts, with an EC50 value of 26.33 µg/mL. Phytochemical analysis suggested that the seed ethanol extract contained the highest total phenolic and flavonoid contents (10.66 g% gallic acid equivalent and 7.16 g% quercetin equivalent, respectively by a significant amount. Thin layer chromatographic analysis of the extracts showed the chromatographic band that could correspond to a flavonoid baicalein. From the results, extracts from O. indicum fruits have an in vitro antioxidant effect, with antibacterial potential, on

  6. GC/GCMS analysis of the petroleum ether and dichloromethane extracts of Moringa oleifera roots

    Institute of Scientific and Technical Information of China (English)

    Shaheen Faizi; Saima Sumbul; Muhammed Ali Versiani; Rubeena Saleem; Aisha Sana; Hira Siddiqui

    2014-01-01

    Objective:To explore the phytochemical constituents from petroleum ether and dichloromethane extracts of Moringa oleifera (M. oleifera) roots using GC/GC-MS. Methods: A total of 5.11 kg fresh and undried crushed root of M. oleifera were cut into small pieces and extracted with petroleum ether and dichloromethane (20 L each) at room temperature for 2 d. The concentrated extracts were subjected to their GC-MS analysis. Results:The GC-MS analysis of the petroleum ether and dichloromethane extracts of M. oleifera roots, which showed promising biological activities, has resulted in the identification 102 compounds. These constituents belong to 15 classes of compounds including hydrocarbons, fatty acids, esters, alcohols, isothiocyanate, thiocyanate, pyrazine, aromatics, alkamides, cyanides, steroids, halocompounds, urea and N-hydroxyimine derivatives, unsaturated alkenamides, alkyne and indole. GC/GC-MS studies on petroleum ether extract of the roots revealed that it contained 39 compounds, belonging to nine classes. Cyclooctasulfur S8 has been isolated as a pure compound from the extract. The major compounds identified from petroleum ether extract were trans-13-docosene (37.9%), nonacosane (32.6%), cycloartenol (28.6%) nonadecanoic acid (13.9%) and cyclooctasulfur S8 (13.9%). Dichloromethane extract of the roots was composed of 63 compounds of which nasimizinol (58.8%) along with oleic acid (46.5%), N-benzyl-N-(7-cyanato heptanamide (38.3%), N-benzyl-N-(1-chlorononyl) amide (30.3%), bis [3-benzyl prop-2-ene]-1-one (19.5%) and N, N-dibenzyl-2-ene pent 1, 5-diamide (11.6%) were the main constituents. Conclusions:This study helps to predict the formula and structure of active molecules which can be used as drugs. This result also enhances the traditional usage of M. oleifera which possesses a number of bioactive compounds.

  7. Screening for Antibacterial and Antioxidant Activities and Phytochemical Analysis of Oroxylum indicum Fruit Extracts.

    Science.gov (United States)

    Sithisarn, Patchima; Nantateerapong, Petcharat; Rojsanga, Piyanuch; Sithisarn, Pongtip

    2016-04-07

    Oroxylum indicum, which is called Pheka in Thai, is a traditional Thai plant in the Bignoniaceae family with various ethnomedical uses such as as an astringent, an anti-inflammatory agent, an anti-bronchitic agent, an anti-helminthic agent and an anti-microbial agent. The young fruits of this plant have also been consumed as vegetables. However, there has been no report concerning its antibacterial activities, especially activities related to clinically isolated pathogenic bacteria and the in vitro antioxidant effects of this plant. Therefore, the extracts from O. indicum fruits and seeds collected from different provinces in Thailand were prepared by decoction and maceration with ethanol and determined for their in vitro antibacterial effects on two clinically isolated bacteria, Streptococcus suis and Staphylococcus intermedius, using disc diffusion assay. Ethanol extracts from O. indicum fruits collected from Nakorn Pathom province at the concentration of 1000 mg/mL exhibited intermediate antibacterial activity against S. intermedius with an inhibition zone of 15.11 mm. Moreover, it promoted moderate inhibitory effects on S. suis with an inhibition zone of 14.39 mm. The extracts prepared by maceration with ethanol promoted higher antibacterial activities than those prepared with water. The ethanol extract from the seeds of this plant, purchased in Bangkok, showed stronger in vitro antioxidant activities than the other extracts, with an EC50 value of 26.33 µg/mL. Phytochemical analysis suggested that the seed ethanol extract contained the highest total phenolic and flavonoid contents (10.66 g% gallic acid equivalent and 7.16 g% quercetin equivalent, respectively) by a significant amount. Thin layer chromatographic analysis of the extracts showed the chromatographic band that could correspond to a flavonoid baicalein. From the results, extracts from O. indicum fruits have an in vitro antioxidant effect, with antibacterial potential, on clinically pathologic

  8. Use of solvent mixtures for total lipid extraction of Chlorella vulgaris and gas chromatography FAME analysis.

    Science.gov (United States)

    Moradi-Kheibari, Narges; Ahmadzadeh, Hossein; Hosseini, Majid

    2017-06-07

    Lipid extraction is the bottleneck step for algae-based biodiesel production. Herein, 12 solvent mixture systems (mixtures of three non-polar and two polar organic solvents) were examined to evaluate their effects on the total lipid yield from Chlorella vulgaris (C. vulgaris). Moreover, the extraction yields of three solvent systems with maximum extraction efficiency of esterifiable lipids were determined by acidic transesterification and GC-FID analysis. Three solvent systems, which resulted in a higher extraction yield, were further subjected to fatty acid methyl ester (FAME) analysis. The total lipid extraction yields (based on dry biomass) were (38.57 ± 1.51), (25.33 ± 0.58), and (25.17 ± 1.14) %, for chloroform-methanol (1:2) (C1M2), hexane-methanol (1:2) (H1M2), and chloroform-methanol (2:1) (C2M1), respectively. The extraction efficiency of C1M2 was approximately 1.5 times higher than H1M2 and C2M1, whereas the FAME profile of extracted lipids by H1M2 and C1M2 were almost identical. Moreover, the esterifiable lipid extraction yields of (18.14 ± 2.60), (16.66 ± 0.35), and (13.22 ± 0.31) % (based on dry biomass) were obtained for C1M2, H1M2, and C2M1 solvent mixture systems, respectively. The biodiesel fuel properties produced from C. vulgaris were empirically predicted and compared to that of the EN 14214 and ASTM 6751 standard specifications.

  9. Amla (Emblica officinalis Gaertn.) extract inhibits lipopolysaccharide-induced procoagulant and pro-inflammatory factors in cultured vascular endothelial cells.

    Science.gov (United States)

    Rao, Theertham Pradyumna; Okamoto, Takayuki; Akita, Nobuyuki; Hayashi, Tatsuya; Kato-Yasuda, Naomi; Suzuki, Koji

    2013-12-01

    Amla (Emblica officinalis Gaertn.) has been used for many centuries in traditional Indian Ayurvedic formulations for the prevention and treatment of many inflammatory diseases. The present study evaluated the anti-inflammatory and anticoagulant properties of amla fruit extract. The amla fruit extract potentially and significantly reduced lipopolysaccharide (LPS)-induced tissue factor expression and von Willebrand factor release in human umbilical vein endothelial cells (HUVEC) in vitro at clinically relevant concentrations (1-100 μg/ml). In a leucocyte adhesion model of inflammation, it also significantly decreased LPS-induced adhesion of human monocytic cells (THP-1) to the HUVEC, as well as reduced the expression of endothelial-leucocyte adhesion molecule-1 (E-selectin) in the target cells. In addition, the in vivo anti-inflammatory effects were evaluated in a LPS-induced endotoxaemia rat model. Oral administration of the amla fruit extract (50 mg/kg body weight) significantly decreased the concentrations of pro-inflammatory cytokines, TNF-α and IL-6 in serum. These results suggest that amla fruit extract may be an effective anticoagulant and anti-inflammatory agent.

  10. Soil parameters are key factors to predict metal bioavailability to snails based on chemical extractant data

    Energy Technology Data Exchange (ETDEWEB)

    Pauget, B.; Gimbert, F., E-mail: frederic.gimbert@univ-fcomte.fr; Scheifler, R.; Coeurdassier, M.; Vaufleury, A. de

    2012-08-01

    Although soil characteristics modulate metal mobility and bioavailability to organisms, they are often ignored in the risk assessment of metal transfer. This paper aims to determine the ability of chemical methods to assess and predict cadmium (Cd), lead (Pb) and zinc (Zn) environmental bioavailability to the land snail Cantareus aspersus. Snails were exposed in the laboratory for 28 days to 17 soils from around a former smelter. The soils were selected for their range of pH, organic matter, clay content, and Cd, Pb and Zn concentrations. The influence of soil properties on environmental availability (estimated using HF-HClO{sub 4}, EDTA, CaCl{sub 2}, NH{sub 4}NO{sub 3}, NaNO{sub 3}, free ion activity and total dissolved metal concentration in soil solution) and on environmental bioavailability (modelled using accumulation kinetics) was identified. Among the seven chemical methods, only the EDTA and the total soil concentration can be used to assess Cd and Pb environmental bioavailability to snails (r Superscript-Two {sub adj} = 0.67 and 0.77, respectively). For Zn, none of the chemical methods were suitable. Taking into account the influence of the soil characteristics (pH and CEC) allows a better prediction of Cd and Pb environmental bioavailability (r Superscript-Two {sub adj} = 0.82 and 0.83, respectively). Even though alone none of the chemical methods tested could assess Zn environmental bioavailability to snails, the addition of pH, iron and aluminium oxides allowed the variation of assimilation fluxes to be predicted. A conceptual and practical method to use soil characteristics for risk assessment is proposed based on these results. We conclude that as yet there is no universal chemical method to predict metal environmental bioavailability to snails, and that the soil factors having the greatest impact depend on the metal considered. - Highlights: Black-Right-Pointing-Pointer New approach to identify chemical methods able to predict metal bioavailability

  11. Factor Analysis for Spectral Reconnaissance and Situational Understanding

    Science.gov (United States)

    2016-07-11

    reviewed journals: Final Report: Factor Analysis for Spectral Reconnaissance and Situational Understanding Report Title The Army has a critical need for...based NP-hard design problems, by associating them with corresponding estimation problems. 1 Factor Analysis for Spectral Reconnaissance and Situational ...SECURITY CLASSIFICATION OF: The Army has a critical need for enhancing situational understanding for dismounted soldiers and rapidly deployed tactical

  12. A Factor Analysis of the BSRI and the PAQ.

    Science.gov (United States)

    Edwards, Teresa A.; And Others

    Factor analysis of the Bem Sex Role Inventory (BSRI) and the Personality Attributes Questionnaire (PAQ) was undertaken to study the independence of the masculine and feminine scales within each instrument. Both instruments were administered to undergraduate education majors. Analysis of primary first and second order factors of the BSRI indicated…

  13. Exploratory Factor Analysis of African Self-Consciousness Scale Scores

    Science.gov (United States)

    Bhagwat, Ranjit; Kelly, Shalonda; Lambert, Michael C.

    2012-01-01

    This study replicates and extends prior studies of the dimensionality, convergent, and external validity of African Self-Consciousness Scale scores with appropriate exploratory factor analysis methods and a large gender balanced sample (N = 348). Viable one- and two-factor solutions were cross-validated. Both first factors overlapped significantly…

  14. Multigroup Confirmatory Factor Analysis: Locating the Invariant Referent Sets

    Science.gov (United States)

    French, Brian F.; Finch, W. Holmes

    2008-01-01

    Multigroup confirmatory factor analysis (MCFA) is a popular method for the examination of measurement invariance and specifically, factor invariance. Recent research has begun to focus on using MCFA to detect invariance for test items. MCFA requires certain parameters (e.g., factor loadings) to be constrained for model identification, which are…

  15. Improved Proteomic Analysis Following Trichloroacetic Acid Extraction of Bacillus anthracis Spore Proteins

    Energy Technology Data Exchange (ETDEWEB)

    Kaiser, Brooke LD; Wunschel, David S.; Sydor, Michael A.; Warner, Marvin G.; Wahl, Karen L.; Hutchison, Janine R.

    2015-08-07

    Proteomic analysis of bacterial samples provides valuable information about cellular responses and functions under different environmental pressures. Proteomic analysis is dependent upon efficient extraction of proteins from bacterial samples without introducing bias toward extraction of particular protein classes. While no single method can recover 100% of the bacterial proteins, selected protocols can improve overall protein isolation, peptide recovery, or enrich for certain classes of proteins. The method presented here is technically simple and does not require specialized equipment such as a mechanical disrupter. Our data reveal that for particularly challenging samples, such as B. anthracis Sterne spores, trichloroacetic acid extraction improved the number of proteins identified within a sample compared to bead beating (714 vs 660, respectively). Further, TCA extraction enriched for 103 known spore specific proteins whereas bead beating resulted in 49 unique proteins. Analysis of C. botulinum samples grown to 5 days, composed of vegetative biomass and spores, showed a similar trend with improved protein yields and identification using our method compared to bead beating. Interestingly, easily lysed samples, such as B. anthracis vegetative cells, were equally as effectively processed via TCA and bead beating, but TCA extraction remains the easiest and most cost effective option. As with all assays, supplemental methods such as implementation of an alternative preparation method may provide additional insight to the protein biology of the bacteria being studied.

  16. QUALITATIVE ANALYSIS AND ANTHELMINTIC ACTIVITY OF HYDRO-ALCOHOLIC EXTRACT OF TABERNAEMONTANA DIVARICATA

    Directory of Open Access Journals (Sweden)

    B. N. VEDHA HARI, AKHILA SRAVYA DANTU, P. SHANKARGURU, D. RAMYA DEVI

    2013-09-01

    Full Text Available Tabernaemontana divaricata is a common shrub found in the tropical regions and is often used for medicinal purposes, particularly the flowers of the plant. The present study is conducted to compare and identify the phytochemical constituents by Thin Layer Chromatography (TLC and Qualitative Phytochemical analysis and to determine the anthelmentic activity of fresh and dried flower extract of Tabernaemontana divaricata. The extract is obtained using two different methods like cold maceration and hot solvent extraction by using soxhlet apparatus, first with petroleum ether followed by hydroalcohol as solvents. The preliminary phytochemical analysis of the extract indicated the presence of Alkaloids, Flavanoids, Steroids, Proteins, Carbohydrates and Tannins. The Rf value of TLC is calculated and compared with standard values and analysis proved the presence of the phytochemical constituents. The anthelmentic activity studies are performed using Indian earth worms. For this, the concentrated extract is diluted to various concentrations, and the effect of each solution is studied by measuring the time taken for paralysis and death of the earth worms. It is found to show significant anthelmentic activity at various concentrations compared with that of the standard drug Metronidazole.

  17. Information Extraction for System-Software Safety Analysis: Calendar Year 2008 Year-End Report

    Science.gov (United States)

    Malin, Jane T.

    2009-01-01

    This annual report describes work to integrate a set of tools to support early model-based analysis of failures and hazards due to system-software interactions. The tools perform and assist analysts in the following tasks: 1) extract model parts from text for architecture and safety/hazard models; 2) combine the parts with library information to develop the models for visualization and analysis; 3) perform graph analysis and simulation to identify and evaluate possible paths from hazard sources to vulnerable entities and functions, in nominal and anomalous system-software configurations and scenarios; and 4) identify resulting candidate scenarios for software integration testing. There has been significant technical progress in model extraction from Orion program text sources, architecture model derivation (components and connections) and documentation of extraction sources. Models have been derived from Internal Interface Requirements Documents (IIRDs) and FMEA documents. Linguistic text processing is used to extract model parts and relationships, and the Aerospace Ontology also aids automated model development from the extracted information. Visualizations of these models assist analysts in requirements overview and in checking consistency and completeness.

  18. Anti-inflammatory, pro-apoptotic, and anti-proliferative effects of a methanolic neem (Azadirachta indica) leaf extract are mediated via modulation of the nuclear factor-κB pathway.

    Science.gov (United States)

    Schumacher, Marc; Cerella, Claudia; Reuter, Simone; Dicato, Mario; Diederich, Marc

    2011-05-01

    Azadirachta indica (neem tree) is used in traditional Indian medicine for its pharmacological properties including cancer prevention and treatment. Here, we studied a neem extract's anti-inflammatory potential via the nuclear factor-κB (NF-κB) signaling pathway, linked to cancer, inflammation, and apoptosis. Cultured human leukemia cells were treated with a methanolic neem leaf extract with or without tumor necrosis factor (TNF)-α stimulation. Inhibition of NF-κB activity was demonstrated by luciferase assay and electrophoretic mobility shift assay (EMSA). Inhibition of viability by neem extracts was assessed by luminescent assays. Western blot analysis allowed assessing the inhibitory effect of the neem extract on TNF-α-induced degradation of inhibitor of κB (IκB) and nuclear translocation of the NF-κB p50/p65 heterodimer. Inhibition of IκB kinase (IKK) activity was shown as well as the effect of neem extract on the induction of apoptotic cell death mechanisms by nuclear fragmentation analysis and flow cytometry analysis. In conclusion, our data provide evidence for a strong effect of the neem extract on pro-inflammatory cell signaling and apoptotic cell death mechanisms, contributing to a better understanding of the mechanisms triggered by Azadirachta indica.

  19. Data extraction for complex meta-analysis (DECiMAL) guide.

    Science.gov (United States)

    Pedder, Hugo; Sarri, Grammati; Keeney, Edna; Nunes, Vanessa; Dias, Sofia

    2016-12-13

    As more complex meta-analytical techniques such as network and multivariate meta-analyses become increasingly common, further pressures are placed on reviewers to extract data in a systematic and consistent manner. Failing to do this appropriately wastes time, resources and jeopardises accuracy. This guide (data extraction for complex meta-analysis (DECiMAL)) suggests a number of points to consider when collecting data, primarily aimed at systematic reviewers preparing data for meta-analysis. Network meta-analysis (NMA), multiple outcomes analysis and analysis combining different types of data are considered in a manner that can be useful across a range of data collection programmes. The guide has been shown to be both easy to learn and useful in a small pilot study.

  20. Factor Analysis of People Rather than Variables: Q and Other Two-Mode Factor Analytic Models.

    Science.gov (United States)

    Frederick, Brigitte N.

    Factor analysis attempts to study how different objects group together to form factors with the purposes of: (1) reducing the number of factorable entities (e.g., variables) with which the researcher needs to deal; (2) searching data for qualitative and quantitative differences; and (3) testing hypotheses (R. Gorsuch, 1983). While most factor…

  1. Chiral analysis of baryon form factors

    Energy Technology Data Exchange (ETDEWEB)

    Gail, T.A.

    2007-11-08

    This work presents an extensive theoretical investigation of the structure of the nucleon within the standard model of elementary particle physics. In particular, the long range contributions to a number of various form factors parametrizing the interactions of the nucleon with an electromagnetic probe are calculated. The theoretical framework for those calculations is chiral perturbation theory, the exact low energy limit of Quantum Chromo Dynamics, which describes such long range contributions in terms of a pion-cloud. In this theory, a nonrelativistic leading one loop order calculation of the form factors parametrizing the vector transition of a nucleon to its lowest lying resonance, the {delta}, a covariant calculation of the isovector and isoscalar vector form factors of the nucleon at next to leading one loop order and a covariant calculation of the isoscalar and isovector generalized vector form factors of the nucleon at leading one loop order are performed. In order to perform consistent loop calculations in the covariant formulation of chiral perturbation theory an appropriate renormalization scheme is defined in this work. All theoretical predictions are compared to phenomenology and results from lattice QCD simulations. These comparisons allow for a determination of the low energy constants of the theory. Furthermore, the possibility of chiral extrapolation, i.e. the extrapolation of lattice data from simulations at large pion masses down to the small physical pion mass is studied in detail. Statistical as well as systematic uncertainties are estimated for all results throughout this work. (orig.)

  2. Information extraction from topographic map using colour and shape analysis

    Indian Academy of Sciences (India)

    Nikam Gitanjali Ganpatrao; Jayanta Kumar Ghosh

    2014-10-01

    The work presented in this paper is related to symbols and toponym understanding with application to scanned Indian topographic maps. The proposed algorithm deals with colour layer separation of enhanced topographic map using kmeans colour segmentation followed by outline detection and chaining, respectively. Outline detection is performed through linear filtering using canny edge detector. Outline is then encoded in a Freeman way, the x-y offsets have been used to obtain a complex representation of outlines. Final matching of shapes is done by computing Fourier descriptors from the chain-codes; comparison of descriptors having same colour index is embedded in a normalized scalar product of descriptors. As this matching process is not rotation invariant (starting point selection), an interrelation function has been proposed to make the method shifting invariant. The recognition rates of symbols, letters and numbers are 84.68, 91.73 and 92.19%, respectively. The core contribution is dedicated to a shape analysis method based on contouring and Fourier descriptors. To improve recognition rate, obtaining most optimal segmentation solution for complex topographic map will be the future scope of work.

  3. Effect of the Shape Factor as an Input Variable on the Extraction Process for a Reversing Continuous Countercurrent Extractor

    Directory of Open Access Journals (Sweden)

    Waigoon RITTIRUT

    2010-06-01

    Full Text Available The effect of the shape factor on a reversing continuous countercurrent extraction process for concentration profiles is reported. Garcinia fruit was selected as a model solid while sucrose was used as soluble solid for the diffusion system. The results showed that a slab shape gave better results on the concentration profiles for both solid and liquid phases than those of the block shape. A better diffusion mass transfer in the slab shape leads to a better yield. The shape factor results were verified using a model solid system. The phenomena in reversing continuous countercurrent extraction process under steady-state conditions can be explained via a backmixing-diffusion model. The concentration profiles by model prediction corresponded well to those of measured data. Diffusivities which are available for simulation purposes were reported for different thicknesses and operating temperatures. The evaporation took place at an acceptable level for an open system according to the specified operating conditions.

  4. Effects of lipid and urea extraction on δ15N values of deep-sea sharks and hagfish: Can mathematical correction factors be generated?

    Science.gov (United States)

    Churchill, Diana A.; Heithaus, Michael R.; Dean Grubbs, R.

    2015-05-01

    Stable isotope analysis is broadly employed to investigate diverse ecological questions. In order to make appropriate comparisons among multiple taxa, however, it is necessary to standardize values to account for interspecific differences in factors that affect isotopic ratios. For example, varying concentrations of soluble nitrogen compounds, such as urea or trimethylamine oxide, can affect the analysis and interpretation of δ15N values of sharks or hagfish. The goal of this study was to assess the effects of a standard chloroform/methanol extraction on the stable isotope values of muscle tissue obtained from 10 species of sharks and three species of hagfish collected from poorly-known deep-water (>200 m) communities. We detected significant differences in δ15N, %N, and C:N values as a result of extractions in 8 of 10 shark and all three hagfish species. We observed increased δ15N values, but shifts in %N and C:N values were not unidirectional. Mathematical normalizations for δ15N values were successfully created for four shark and two hagfish species. However, they were not successful for two shark species. Therefore, performing extractions of all samples is recommended.

  5. Analytic standard errors for exploratory process factor analysis.

    Science.gov (United States)

    Zhang, Guangjian; Browne, Michael W; Ong, Anthony D; Chow, Sy Miin

    2014-07-01

    Exploratory process factor analysis (EPFA) is a data-driven latent variable model for multivariate time series. This article presents analytic standard errors for EPFA. Unlike standard errors for exploratory factor analysis with independent data, the analytic standard errors for EPFA take into account the time dependency in time series data. In addition, factor rotation is treated as the imposition of equality constraints on model parameters. Properties of the analytic standard errors are demonstrated using empirical and simulated data.

  6. A replication of a factor analysis of motivations for trapping

    Science.gov (United States)

    Schroeder, Susan; Fulton, David C.

    2015-01-01

    Using a 2013 sample of Minnesota trappers, we employed confirmatory factor analysis to replicate an exploratory factor analysis of trapping motivations conducted by Daigle, Muth, Zwick, and Glass (1998).  We employed the same 25 items used by Daigle et al. and tested the same five-factor structure using a recent sample of Minnesota trappers. We also compared motivations in our sample to those reported by Daigle et el.

  7. Analysis of Interaction Factors Between Two Piles

    Institute of Scientific and Technical Information of China (English)

    CAO Ming; CHEN Long-zhu

    2008-01-01

    A rigorous analytical method is presented for calculating the interaction factor between two identical piles subjected to vertical loads. Following the technique proposed by Muki and Sternberg, the problem is decomposed into an extended soil mass and two fictitious piles characterized respectively by Young's modulus of the soil and that of the difference between the pile and soil. The unknown axial forces along fictitious piles are determined by solving a Fredholm integral equation of the second kind, which imposes the compatibility condition that the axial strains of the fictitious piles are equal to those corresponding to the centroidal axes of the extended soil. The real pile forces and displacements can subequally be calculated based on the determined fictitious pile forces, and finally, the desired pile interaction factors may be obtained. Results confirm the validity of the proposed approach and portray the influence of the governing parameters on the pile interaction.

  8. Nano-electromembrane extraction

    DEFF Research Database (Denmark)

    Payán, María D Ramos; Li, Bin; Petersen, Nickolaj J.

    2013-01-01

    The present work has for the first time described nano-electromembrane extraction (nano-EME). In nano-EME, five basic drugs substances were extracted as model analytes from 200 μL acidified sample solution, through a supported liquid membrane (SLM) of 2-nitrophenyl octyl ether (NPOE......), and into approximately 8 nL phosphate buffer (pH 2.7) as acceptor phase. The driving force for the extraction was an electrical potential sustained over the SLM. The acceptor phase was located inside a fused silica capillary, and this capillary was also used for the final analysis of the acceptor phase by capillary...... as extraction selectivity. Compared with conventional EME, the acceptor phase volume in nano-EME was down-scaled by a factor of more than 1000. This resulted in a very high enrichment capacity. With loperamide as an example, an enrichment factor exceeding 500 was obtained in only 5 min of extraction...

  9. Analysis of factors affecting fattening of chickens

    OpenAIRE

    OBERMAJEROVÁ, Barbora

    2013-01-01

    Poultry meat belongs to the basic assortment of human nutrition. The meat of an intensively fattened poultry is a source of easily digestible proteins, lipids, mineral substances and vitamins. The aim of this bachelor´s thesis was to write out a literature review, which is focused on the intensity of growth, carcass yield, quality and composition of broiler chickens meat. The following describes the internal and external factors that affect them, i.e. genetic foundation, hybrid combination, s...

  10. Investigating product development strategy in beverage industry using factor analysis

    OpenAIRE

    Naser Azad; Seyed Mohsen Seyed Aliakbar; Seyed Foad Zarifi; Somayeh Hozouri

    2013-01-01

    Selecting a product development strategy that is associated with the company's current service or product innovation, based on customers’ needs and changing environment, plays an important role in increasing demand, increasing market share, increasing sales and profits. Therefore, it is important to extract effective variables associated with product development to improve performance measurement of firms. This paper investigates important factors influencing product development strategies us...

  11. Preparation of polydopamine-coated magnetic nanoparticles for dispersive solid-phase extraction of water-soluble synthetic colorants in beverage samples with HPLC analysis.

    Science.gov (United States)

    Chai, Weibo; Wang, Huijuan; Zhang, Ying; Ding, Guosheng

    2016-01-01

    A facile and sensitive dispersive solid-phase extraction (D-SPE) method for the extraction and enrichment of four representative synthetic colorants prior to high performance liquid chromatography analysis was introduced. As highly efficient adsorbents, polydopamine-coated Fe3O4 nanoparticles (Fe3O4@PDA NPs) were prepared by a simple and green procedure. Several factors affecting the extraction efficiency, mainly including the polymerization time of dopamine, pH of the sample solution, the amount of adsorbent, extraction time and the desorption conditions, were systematically studied. Under the optimized conditions, the enrichment factors for the four colorants were both higher than 176. The limits of detection (LODs) for the established d-SPE-HPLC method were found to be 0.20-0.25μgL(-1), which were lower than most chromatographic methods previously reported for synthetic colorant analysis. When used for quantitative analysis, wide linearity ranges (1-500μgL(-1) for amaranth and Ponceau 4R, and 0.80-500μgL(-1) for sunset yellow and allure red) were achieved with good correlation (R(2)≥0.9995). The developed method was also successfully applied to the analysis of colorants in beverage samples with satisfactory results, demonstrating its reliability and feasibility in real sample analysis.

  12. Phytochemical analysis and in vitro antioxidant acitivity of hydroalcoholic seed extract of Nymphaea nouchali Burm. f.

    Institute of Scientific and Technical Information of China (English)

    Mabel Parimala; Francis Gricilda Shoba

    2013-01-01

    Objective: To evaluate the phytochemical constituents and the antioxidant activity of hydroalcoholic extract of Nymphaea nouchali seed locally prescribed as a diet for diabetes mellitus.Methods:the plant was assessed against 1,1 diphenyl-2-picryl hydrazyl (DPPH), nitric oxide and lipid peroxidation using standard protocols. Total phenolics, flavonoids and tannins were also determined.Results:Phytochemical analysis revealed the presence of phenols, flavones, tannins, protein, The antioxidant and free radical scavenging activity of hydroalcoholic extract of reducing sugars, glycosides, saponins, alkaloids and steroids. The activities of plant extract against DPPH, nitric oxide and lipid peroxidation was concentration dependent with IC50 value of 42.82, 23.58 and 54.65 µg/mL respectively. The total antioxidant capacity was high with 577.73 mg vitamin E/g of the extract and showed a moderately high vitamin C content of 197.22 mg/g. The total tannin content of hydroalcoholic seed extract was high (195.84 GE/g), followed by phenolics (179.56 GE/g) and flavonoids (23.55 QE/g).Conclusion:Our findings provide evidence that the crude extract of Nymphaea nouchali is a potential source of natural antioxidants and this justifies its use in folkloric medicine.

  13. Ultrasound-assisted extraction, HPLC analysis, and antioxidant activity of polyphenols from unripe apple.

    Science.gov (United States)

    Yue, Tianli; Shao, Dongyan; Yuan, Yahong; Wang, Zhouli; Qiang, Chunyan

    2012-08-01

    The polyphenols were extracted from the unripe apple assisted by a highly efficient and simple method of the ultrasound. Response surface methodology was used to investigate the effects of processing parameters, including ultrasound power, extraction time, temperature, and ethanol concentration on total polyphenols yield and polyphenols composition was analyzed by HPLC. Antioxidant activity of the polyphenols was evaluated as 2, 2-diphenyl-1-picrylhydracyl scavenging activity and inhibition activity of lipid peroxidation. The results showed that 10-100 times higher total polyphenols yield was obtained from the unripe apple than those from the reported apple pomace. The optimum extraction conditions were ultrasonic power of 519.39 W, extraction time of 30 min, extraction temperature 50°C, ethanol concentration of 50% gave the total polyphenols yield of 13.26 ± 0.56 mg GAE/g. HPLC analysis indicated that (-)-epicatechin, procyanidin B2, chlorogenic acid, and procyanidin B1 were the predominant polyphenols in unripe apple, which contributed to the higher antioxidant activity to 2, 2-diphenyl-1-picrylhydracyl of unripe apple polyphenols than other apple polyphenols. The extracted polyphenols had higher ability to inhibit lipid peroxidation than butylated hydroxy toluene, which demonstrated that the unripe apple polyphenols have the potential to be used as a substitute of some synthetic antioxidants.

  14. Antimicrobial Activity and Phytochemical Analysis of Morinda tinctoria Roxb. Leaf Extracts

    Institute of Scientific and Technical Information of China (English)

    K Deepti; PUmadevi; GVijayalakshmi; BVinod polarao

    2012-01-01

    Objective: The objective of the present work is to evaluate the presence of Phytochemical constituents and antimicrobial activity of different extracts of leaves of Morinda tinctoria Roxb. Methods: The serial exhaustive extraction was done with a series of solvents: Hexane, Chloroform, Ethylacetate and Methanol with increasing polarity using soxhlet apparatus. The Phytochemical analysis was done by using the standard procedures. Antimicrobial activity was evaluated by Agar well diffusion method against nine human pathogens. Results: The results revealed that the leaf extracts contain a broad spectrum of secondary metabolites: Alkaloids, Phytosterols, Flavonoids, Phenols and Triterpenes in major proportion. Methanol extract was shown to be more effective against all the organisms followed by Ethylacetate, Chloroform and Hexane extracts. Proteus vulgaris (24mm) was found to be most sensitive organism followed by Klebsiella pneumonia (21mm) and Enterococcus feacelis (21mm). Conclusions: The present study concludes that the different extracts of M. tinctoria leaves contain a broad spectrum of secondary metabolites and also exhibit antimicrobial activity against all the tested microorganisms. It can also be concluded that Morinda tinctoria plant can be exploited to discover the bioactive natural products that may serve as leads in the development of new pharmaceuticals.

  15. Region of interest extraction based on saliency detection and contrast analysis for remote sensing images

    Science.gov (United States)

    Lv, Jing; Zhang, Libao; Wang, Shuang

    2016-10-01

    Region of Interest (ROI) extraction is an important component in remote sensing images processing, which is useful for further practical applications such as image compression, image fusion, image segmentation and image registration. Traditional ROI extraction methods are usually prior knowledge-based and depend on a global searching solution which are time consuming and computational complex. Saliency detection which is widely used for ROI extraction from natural scene images in these years can effectively solve the problem of high computation complexity in ROI extraction for remote sensing images as well as retain accuracy. In this paper, a new computational model is proposed to improve the accuracy of ROI extraction in remote sensing images. Considering the characteristics of remote sensing images, we first use lifting wavelet transform based on adaptive direction evaluation (ADE) to obtain multi-scale orientation contrast feature map (MF). Secondly, the features of color are exploited using the information content analysis to provide a color information map (CIM). Thirdly, feature fusion is used to integrate multi-scale orientation contrast features and color information for generating a saliency map. Finally, an adaptive threshold segmentation algorithm is employed to obtain the ROI. Compared with existing models, our method can not only effectively extract detail of the ROIs, but also effectively remove mistaken detection of the inner parts of the ROIs.

  16. Analysis of the essential oils of Alpiniae Officinarum Hance in different extraction methods

    Science.gov (United States)

    Yuan, Y.; Lin, L. J.; Huang, X. B.; Li, J. H.

    2017-09-01

    It was developed for the analysis of the essential oils of Alpiniae Officinarum Hance extracted by steam distillation (SD), ultrasonic assisted solvent extraction (UAE) and supercritical fluid extraction (SFE) via gas chromatography mass spectrometry (GC-MS) combined with retention index (RI) method. There were multiple volatile components of the oils extracted by the three above-mention methods respectively identified; meanwhile, each one was quantified by area normalization method. The results indicated that the content of 1,8-Cineole, the index constituent, by SD was similar as SFE, and higher than UAE. Although UAE was less time consuming and consumed less energy, the oil quality was poorer due to the use of organic solvents was hard to degrade. In addition, some constituents could be obtained by SFE but could not by SD. In conclusion, essential oil of different extraction methods from the same batch of materials had been proved broadly similarly, however, there were some differences in composition and component ratio. Therefore, development and utilization of different extraction methods must be selected according to the functional requirements of products.

  17. Determination of Important Topographic Factors for Landslide Mapping Analysis Using MLP Network

    Directory of Open Access Journals (Sweden)

    Mutasem Sh. Alkhasawneh

    2013-01-01

    Full Text Available Landslide is one of the natural disasters that occur in Malaysia. Topographic factors such as elevation, slope angle, slope aspect, general curvature, plan curvature, and profile curvature are considered as the main causes of landslides. In order to determine the dominant topographic factors in landslide mapping analysis, a study was conducted and presented in this paper. There are three main stages involved in this study. The first stage is the extraction of extra topographic factors. Previous landslide studies had identified mainly six topographic factors. Seven new additional factors have been proposed in this study. They are longitude curvature, tangential curvature, cross section curvature, surface area, diagonal line length, surface roughness, and rugosity. The second stage is the specification of the weight of each factor using two methods. The methods are multilayer perceptron (MLP network classification accuracy and Zhou's algorithm. At the third stage, the factors with higher weights were used to improve the MLP performance. Out of the thirteen factors, eight factors were considered as important factors, which are surface area, longitude curvature, diagonal length, slope angle, elevation, slope aspect, rugosity, and profile curvature. The classification accuracy of multilayer perceptron neural network has increased by 3% after the elimination of five less important factors.

  18. Determination of important topographic factors for landslide mapping analysis using MLP network.

    Science.gov (United States)

    Alkhasawneh, Mutasem Sh; Ngah, Umi Kalthum; Tay, Lea Tien; Mat Isa, Nor Ashidi; Al-batah, Mohammad Subhi

    2013-01-01

    Landslide is one of the natural disasters that occur in Malaysia. Topographic factors such as elevation, slope angle, slope aspect, general curvature, plan curvature, and profile curvature are considered as the main causes of landslides. In order to determine the dominant topographic factors in landslide mapping analysis, a study was conducted and presented in this paper. There are three main stages involved in this study. The first stage is the extraction of extra topographic factors. Previous landslide studies had identified mainly six topographic factors. Seven new additional factors have been proposed in this study. They are longitude curvature, tangential curvature, cross section curvature, surface area, diagonal line length, surface roughness, and rugosity. The second stage is the specification of the weight of each factor using two methods. The methods are multilayer perceptron (MLP) network classification accuracy and Zhou's algorithm. At the third stage, the factors with higher weights were used to improve the MLP performance. Out of the thirteen factors, eight factors were considered as important factors, which are surface area, longitude curvature, diagonal length, slope angle, elevation, slope aspect, rugosity, and profile curvature. The classification accuracy of multilayer perceptron neural network has increased by 3% after the elimination of five less important factors.

  19. Solid Phase Extraction: Applications to the Chromatographic Analysis of Vegetable Oils and Fats

    Energy Technology Data Exchange (ETDEWEB)

    Panagiotopoulout, P. M.; Tsimidou, M.

    2002-07-01

    Applications of solid-phase extraction for the isolation of certain lipid classes prior to chromatographic analysis are given. More information was found for sterols and related compounds, polar phenols and contaminants such as polycyclic aromatic hydrocarbons. Detailed analytical protocols are presented and discussed in many cases. (Author) 120 refs.

  20. BioFoV - An open platform for forensic video analysis and biometric data extraction

    DEFF Research Database (Denmark)

    Almeida, Miguel; Correia, Paulo Lobato; Larsen, Peter Kastmand

    2016-01-01

    to tailor-made software, based on state of art knowledge in fields such as soft biometrics, gait recognition, photogrammetry, etc. This paper proposes an open and extensible platform, BioFoV (Biometric Forensic Video tool), for forensic video analysis and biometric data extraction, aiming to host some...

  1. ANALYSIS OF FERRIC AND FERROUS IONS IN SOIL EXTRACTS BY ION CHROMATOGRAPHY

    Science.gov (United States)

    A method using ion chromatography (IC) for the analysis of ferrous (Fe 2+) and ferric (Fe 3+) ions in soil extracts has been developed. This method uses an ion exchange column with detection at 520 nm after post-column derivatization. Selectivity is achieved by using an anionic...

  2. Chemical analysis and quality control of Ginkgo biloba leaves, extracts, and phytopharmaceuticals

    NARCIS (Netherlands)

    Beek, van T.A.; Montoro, P.

    2009-01-01

    The chemical analysis and quality control of Ginkgo leaves, extracts, phytopharmaceuticals and some herbal supplements is comprehensively reviewed. The review is an update of a similar, earlier review in this journal [T.A. van Beek, J. Chromatogr. A 967 (2002) 21¿55]. Since 2001 over 3000 papers on

  3. ANALYSIS OF FERRIC AND FERROUS IONS IN SOIL EXTRACTS BY ION CHROMATOGRAPHY

    Science.gov (United States)

    A method using ion chromatography (IC) for the analysis of ferrous (Fe 2+) and ferric (Fe 3+) ions in soil extracts has been developed. This method uses an ion exchange column with detection at 520 nm after post-column derivatization. Selectivity is achieved by using an anionic...

  4. Spectral analysis and anti-bacterial activity of methanolic fruit extract ...

    African Journals Online (AJOL)

    sunny t

    Gas chromatography-mass spectrometry (GC-MS) analysis of C. colocynthis revealed the existence of the methyl 6-oxoheptanoate, hexanoic acid, .... obtained from an alcoholic extract of colocynth, an ether- ... room temperature with 100 ml of methanol for 6 h according to ..... Plant based natural constituents can be.

  5. Confirmatory factor analysis of the Oral Health Impact Profile.

    Science.gov (United States)

    John, M T; Feuerstahler, L; Waller, N; Baba, K; Larsson, P; Celebić, A; Kende, D; Rener-Sitar, K; Reissmann, D R

    2014-09-01

    Previous exploratory analyses suggest that the Oral Health Impact Profile (OHIP) consists of four correlated dimensions and that individual differences in OHIP total scores reflect an underlying higher-order factor. The aim of this report is to corroborate these findings in the Dimensions of Oral Health-Related Quality of Life (DOQ) Project, an international study of general population subjects and prosthodontic patients. Using the project's Validation Sample (n = 5022), we conducted confirmatory factor analyses in a sample of 4993 subjects with sufficiently complete data. In particular, we compared the psychometric performance of three models: a unidimensional model, a four-factor model and a bifactor model that included one general factor and four group factors. Using model-fit criteria and factor interpretability as guides, the four-factor model was deemed best in terms of strong item loadings, model fit (RMSEA = 0·05, CFI = 0·99) and interpretability. These results corroborate our previous findings that four highly correlated factors - which we have named Oral Function, Oro-facial Pain, Oro-facial Appearance and Psychosocial Impact - can be reliably extracted from the OHIP item pool. However, the good fit of the unidimensional model and the high interfactor correlations in the four-factor solution suggest that OHRQoL can also be sufficiently described with one score.

  6. Housing Price Forecastability: A Factor Analysis

    DEFF Research Database (Denmark)

    Bork, Lasse; Møller, Stig Vinther

    2016-01-01

    We examine U.S. housing price forecastability using principal component analysis (PCA), partial least squares (PLS), and sparse PLS (SPLS). We incorporate information from a large panel of 128 economic time series and show that macroeconomic fundamentals have strong predictive power for future...

  7. Housing price forecastability: A factor analysis

    DEFF Research Database (Denmark)

    Møller, Stig Vinther; Bork, Lasse

    2017-01-01

    We examine U.S. housing price forecastability using principal component analysis (PCA), partial least squares (PLS), and sparse PLS (SPLS). We incorporate information from a large panel of 128 economic time series and show that macroeconomic fundamentals have strong predictive power for future...

  8. Shrimp Allergy: Analysis of Commercially Available Extracts for In Vivo Diagnosis.

    Science.gov (United States)

    Asero, R; Scala, E; Villalta, D; Pravettoni, V; Arena, A; Billeri, L; Colombo, G; Cortellini, G; Cucinelli, F; De Cristofaro, M L; Farioli, L; Iemoli, E; Lodi Rizzini, F; Longo, R; Losappio, L; Macchia, D; Maietta, G; Minale, P; Murzilli, F; Nebiolo, F; Pastorello, E A; Ventura, M T; Voltolini, S; Amato, S; Mistrello, G

    Skin prick testing (SPT) with commercial extracts is the first step in the diagnosis of shrimp allergy, although its clinical efficiency is unknown. Objective: To analyze the clinical usefulness of all commercial crustacean extracts available for SPT in Italy. We performed a multicenter study of 157 shrimp-allergic patients who underwent SPT with 5 commercial crustacean extracts and with house dust mite (HDM) extract. Commercial extracts were analyzed using SDS-PAGE and compared with a freshly prepared in-house shrimp extract. IgE to Pen a 1/Pen m 1, Pen m 2, and Pen m 4 was determined, and immunoblot analysis was performed on a large number of sera. The skin reactions caused by commercial crustacean extracts were extremely heterogeneous, resulting in 32 clinical profiles, with marked differences in protein content and missing proteins at molecular weights corresponding to those of major shrimp allergens. Only strong Pen a 1/Pen m 1 reactors reacted to both HDM and all 5 commercial extracts in SPT. Most patients, including those who were tropomyosin-negative, reacted to HDM. Patients reacted to a large and variable array of proteins, and IgE reactivity was common at high molecular weights (>50 kDa). The in vivo diagnosis of shrimp allergy must continue to be based on SPT with fresh material. Shrimp-allergic patients frequently react to a number of ill-defined high-molecular-weight allergens, thus leaving currently available materials for component-resolved diagnosis largely insufficient. Mites and crustaceans probably share several allergens other than tropomyosin.

  9. Solvent effects on quantitative analysis of brominated flame retardants with Soxhlet extraction.

    Science.gov (United States)

    Zhong, Yin; Li, Dan; Zhu, Xifen; Huang, Weilin; Peng, Ping'an

    2017-05-18

    Reliable quantifications of brominated flame retardants (BFRs) not only ensure compliance with laws and regulations on the use of BFRs in commercial products, but also is key for accurate risk assessments of BFRs. Acetone is a common solvent widely used in the analytical procedure of BFRs, but our recent study found that acetone can react with some BFRs. It is highly likely that such reactions can negatively affect the quantifications of BFRs in environmental samples. In this study, the effects of acetone on the extraction yields of three representative BFRs [i.e., decabrominated diphenyl ether (decaBDE), hexabromocyclododecane (HBCD) and tetrabromobisphenol A (TBBPA)] were evaluated in the Soxhlet extraction (SE) system. The results showed that acetone-based SE procedure had no measureable effect for the recovery efficiencies of decaBDE but could substantially lower the extraction yields for both TBBPA and HBCD. After 24 h of extraction, the recovery efficiencies of TBBPA and HBCD by SE were 93 and 78% with acetone, 47 and 70% with 3:1 acetone:n-hexane, and 82 and 94% with 1:1 acetone:n-hexane, respectively. After 72 h of extraction, the extraction efficiencies of TBBPA and HBCD decreased to 68 and 55% with acetone, 0 and 5% with 3:1 acetone/n-hexane mixtures, and 0 and 13% with 1:1 acetone/n-hexane mixtures, respectively. The study suggested that the use of acetone alone or acetone-based mixtures should be restricted in the quantitative analysis of HBCD and TBBPA. We further evaluated nine alternative solvents for the extraction of the three BFRs. The result showed that diethyl ether might be reactive with HBCD and may not be considered as the alternative to acetone used solvents for the extraction of HBCD.

  10. PHYTOCHEMICAL ANALYSIS, TOXICITY AND CYTOTOXICITY EVALUATION OF DENDROPTHOE PENTANDRA LEAVES EXTRACTS

    Directory of Open Access Journals (Sweden)

    Nik Aina Syazana Nik Zainuddin

    2015-07-01

    Full Text Available Dendrophthoe pentandra known as mistletoe is a semi-parasitic plant with traditional claims for some medicinal properties. This research was done to determine phytochemical constituents of Dendropthoe petandra (DP leaves extract, to evaluate toxicity of extracts by brine shrimp lethality test (BSLT and to confirm cytotoxicity activity of DPME against various normal cell lines. The most potent extract was then evaluated by GC-MS. DP leaves that have been extracted with petroleum ether (DPPEE, methanol (DPME and water (DPWE were screened for phytochemical constituents. BSLT was carried out to determine the lethality concentration that kills 50% of tested population (LC50. The cytotoxicity was assessed by Methylene Blue Assay (MBA that evaluates the inhibition concentration for cell growth by 50% (IC50. The normal cell lines used were MDCK, L929 and Vero. Phytochemical analysis revealed the presence of alkaloid, flavonoid, saponin, tannin and terpenoid in those extracts. Highest total phenolic content was found in DPME (471.63±2.02 mg GAE/g. BSLT have determined the lowest LC50 value is 2.74±1.23 ppm in DPME. No IC50 detected when MDCK, L929 and Vero cell line were treated with all extracts. Therefore, this can be concluded that DP extracts did not show any harmful effects towards MDCK, L929 and Vero cell lines although the DPME, DPPEE and DPWE are toxic towards brine shrimp. Hexadecanoic acid, methyl ester and 9,12,15-Octadecatrienoic acid, methyl ester are among compounds present in DPME. Further studies using mammalian cancer cell lines should be conducted on DP extracts to know if they posses anticancer potential.

  11. Environmental analysis of raw cork extraction in cork oak forests in southern Europe (Catalonia--Spain).

    Science.gov (United States)

    Rives, Jesús; Fernandez-Rodriguez, Ivan; Rieradevall, Joan; Gabarrell, Xavier

    2012-11-15

    Cork oak grows endemically in a narrow region bordering the western Mediterranean, and especially in the Iberian Peninsula. The importance of cork agro-forestry systems lies in the fact that a natural and renewable raw material - cork - can be extracted sustainably without endangering the tree or affecting biodiversity. This paper describes an environmental analysis of the extraction of raw cork in cork oak forests in Catalonia, using data from five representative local forest exploitations. The evaluation was carried out using life cycle assessment (LCA) methodology, and all the forestry management required to obtain a tonne of raw cork was included. The aim of the study was to evaluate the environmental impacts - in terms of global warming, acidification, eutrophication, human toxicity, and so on - caused by cork extraction and determine the carbon dioxide balance of these forestry systems, with a tree lifespan of about 200 years. During the life cycle extraction of cork in Catalonia, 0.2 kg of CO(2) eq. was emitted per kg of raw cork extracted. Moreover, cork cannot be extracted without the tree, which will be fixing carbon dioxide throughout its technological useful life (200 years), despite the fact that the bark is removed periodically: every 13-14 years. If the emission from extraction and the carbon contained in the material is discounted, the carbon dioxide balance indicates that 18 kg of CO(2) are fixed per kg of raw cork extracted. Therefore, cork is a natural, renewable and local material that can replace other non-renewable materials, at local level, to reduce the environmental impacts of products, and particularly to reduce their carbon footprint.

  12. Puffed cereals with added chamomile - quantitative analysis of polyphenols and optimization of their extraction method.

    Science.gov (United States)

    Blicharski, Tomasz; Oniszczuk, Anna; Olech, Marta; Oniszczuk, Tomasz; Wójtowicz, Agnieszka; Krawczyk, Wojciech; Nowak, Renata

    2017-05-11

    [b]Abstract Introduction[/b]. Functional food plays an important role in the prevention, management and treatment of chronic diseases. One of the most interesting techniques of functional food production is extrusion-cooking. Functional foods may include such items as puffed cereals, breads and beverages that are fortified with vitamins, some nutraceuticals and herbs. Due to its pharmacological activity, chamomile flowers are the most popular components added to functional food. Quantitative analysis of polyphenolic antioxidants, as well as comparison of various methods for the extraction of phenolic compounds from corn puffed cereals, puffed cereals with an addition of chamomile (3, 5, 10 and 20%) and from [i]Chamomillae anthodium. [/i] [b]Materials and Methods[/b]. Two modern extraction methods - ultrasound assisted extraction (UAE) at 40 °C and 60 °C, as well as accelerated solvent extraction (ASE) at 100 °C and 120 °C were used for the isolation of polyphenols from functional food. Analysis of flavonoids and phenolic acids was carried out using reversed-phase high-performance liquid chromatography and electrospray ionization mass spectrometry (LC-ESI-MS/MS). [b]Results and Conclusions[/b]. For most of the analyzed compounds, the highest yields were obtained by ultrasound assisted extraction. The highest temperature during the ultrasonification process (60 °C) increased the efficiency of extraction, without degradation of polyphenols. UAE easily arrives at extraction equilibrium and therefore permits shorter periods of time, reducing the energy input. Furthermore, UAE meets the requirements of 'Green Chemistry'.

  13. Improved proteomic analysis following trichloroacetic acid extraction of Bacillus anthracis spore proteins.

    Science.gov (United States)

    Deatherage Kaiser, Brooke L; Wunschel, David S; Sydor, Michael A; Warner, Marvin G; Wahl, Karen L; Hutchison, Janine R

    2015-11-01

    Proteomic analysis of bacterial samples provides valuable information about cellular responses and functions under different environmental pressures. Analysis of cellular proteins is dependent upon efficient extraction from bacterial samples, which can be challenging with increasing complexity and refractory characteristics. While no single method can recover 100% of the bacterial proteins, selected protocols can improve overall protein isolation, peptide recovery, or enrichment for certain classes of proteins. The method presented here is technically simple, does not require specialized equipment such as a mechanical disrupter, and is effective for protein extraction of the particularly challenging sample type of Bacillus anthracis Sterne spores. The ability of Trichloroacetic acid (TCA) extraction to isolate proteins from spores and enrich for spore-specific proteins was compared to the traditional mechanical disruption method of bead beating. TCA extraction improved the total average number of proteins identified within a sample as compared to bead beating (547 vs 495, respectively). Further, TCA extraction enriched for 270 spore proteins, including those typically identified by first isolating the spore coat and exosporium layers. Bead beating enriched for 156 spore proteins more typically identified from whole spore proteome analyses. The total average number of proteins identified was equal using TCA or bead beating for easily lysed samples, such as B. anthracis vegetative cells. As with all assays, supplemental methods such as implementation of an alternative preparation method may simplify sample preparation and provide additional insight to the protein biology of the organism being studied.

  14. Reflux extraction and analysis of polyethylene wax in soil 

    Institute of Scientific and Technical Information of China (English)

    XIONG Xiao-li; CHEN Cheng; LUO Xue-gang

    2014-01-01

    An efficient reflux extraction of polyethylene wax (PEW) in soil is presented, followed by molecular structure characterization methods to explore its degradation mechanism. To more realistically simulate the actual degradation of PE film powders in soil, low density PE (M=5 000) powders, being used as simulated PEW residue sample, were uniformly mixed with soil and then recovered by reflux extraction with decahydronaphthalen (decalin) at 90°C for 60 min. The average recovery of PEW from fortified soils was 96.5%with the developed reflux extraction procedure. The recovered PEW residue samples were characterized by infrared spectroscopy (IR), element analysis (EA), X-ray fluorescence (XFR), and high-temperature gel permeation chromatography (GPC). The results from spectra analysis show that there were no significant changes in molecular structures and molecular mass distribution of PEW samples after the reflux extraction, which demonstrate the reliability of this method. These results also indicate that the reflux extraction procedure and analytical methods of characterization could serve as a novel measurement technique to evaluate the degradation of low-density PE powders in soil over time.

  15. Rapid extraction of melamine in powdered milk for direct electrospray ionization tandem mass spectrometry analysis.

    Science.gov (United States)

    Domingo, Elisângela do Carmo; Tireli, Aline Auxiliadora; Nunes, Cleiton Antonio; Batista, Alexandre Vieira; Guerreiro, Mário César; Pinto, Sandra Maria

    2015-01-01

    A combination of a simple pretreatment for melamine extraction and direct analysis in electrospray ionization tandem mass spectrometry (ESI-MS/MS) is proposed. Three pretreatments were evaluated. The first was based on suppressing interference using acetonitrile. The second used sulphuric acid and trichloroacetic acid to suppress interference and for melamine extraction, respectively. The third used sulphuric acid to suppress milk interference, trichloroacetic acid for melamine precipitation, and ethyl acetate for melamine extraction. However, only the last pretreatment suppressed milk interference in melamine detection and a good linearity (R(2)=0.99) was obtained. The presence of MS/MS 85 on melamine fragmentation spectrum showed the selectivity of this method. The limit of detection and limit of quantification were 0.269 µg L(-1) and 0.897 µg L(-1), respectively. The recoveries and relative standard deviation (RDS) of method were lower than 114% and 7.86%, respectively. Further, the research was extended to elucidate the nature of the melamine in the extract through infrared spectroscopy and microscopy analyses. The precipitate was characterized as melaminium bis(trichloroacetate) dihydrate, which is generated through hydrogen bound formation in an interaction between melamine and trichloroacetic acid. Therefore, a simple, fast, and easy method for melamine extraction and direct ESI-MS/MS analysis was developed.

  16. Evaluation of four protein extraction methods for proteomic analysis of mango peel.

    Science.gov (United States)

    Liao, D J; Lu, X P; Chen, H S; Lu, Y; Mo, Z Y

    2016-08-30

    The peel of mango (Mangifera indica L.) is a special plant tissue that contains many compounds that interfere with protein extraction. A successful separation with Two-dimensional electrophoresis (2-DE) is the key step for proteomic analysis. To evaluate the efficiencies of mango peel protein extraction for 2-DE, four extraction methods were tested: 1) 2-D clean-up kit, 2) trichloroacetic acid/acetone precipitation, 3) phenol extraction, 4) phenol with methanol/ammonium acetate precipitation. The results showed that the phenol with methanol/ammonium acetate precipitation produced the best quality protein extraction and separation. Proteins were separated in 30-70 and >70 kDa ranges better than with the other methods. Acidic proteins had better resolution with fewer horizontal and vertical streaks. Sixteen proteins were identified by maxtrix-assisted laser desorption/ ionisation time-of-flight tandem mass spectrometry (MALDI-TOF/ TOF-MS/MS). The result demonstrated that each of these four methods can be used to prepare mango peel proteins. The phenol with methanol/ ammonium acetate precipitation was the best choice for proteomic analysis of mango peel.

  17. Evaluating and modeling the effects of surface sampling factors on the recovery of organic chemical attribution signatures using the accelerated diffusion sampler and solvent extraction

    Energy Technology Data Exchange (ETDEWEB)

    Mo, Kai-For; Heredia-Langner, Alejandro; Fraga, Carlos G.

    2017-03-01

    In this study, an experimental design matrix was created and executed in order to test the effects of various real-world factors on the ability of the (1) accelerated diffusion sampler with solid phase micro-extraction (ADS-SPME) and (2) solvent extraction to capture organic chemical attribution signatures (CAS) from dimethyl methylphosphonate (DMMP) spiked onto painted wall board (PWB) surfaces. The DMMP CAS organic impurities sampled by ADS-SPME and solvent extraction were analyzed by gas chromatography/mass spectrometry (GC/MS). The number of detected DMMP CAS impurities and their respective GC/MS peak areas were determined as a function of DMMP stock, DMMP spiked volume, exposure time, SPME sampling time, and ADS headspace pressure. Based on the statistical analysis of experimental results, several general conclusions are made: (1) ADS-SPME with vacuum (i.e., reduced pressure) increased the amount of detected CAS impurity, as measured by GC/MS peak area, by a factor of 1.7 to 1.9 for PWB under certain experimental conditions, (2) the amount of detected CAS impurity was most influenced by spiked volume, stock, and ADS headspace pressure, (3) the ADS had no measurable effect on the number of detected DMMP impurities, that is, the ADS (with and without reduced pressure) had no practical effect on the DMMP impurity profile collected from spiked PWB, and (4) solvent extraction out performed ADS-SPME in terms of consistently capturing all or most of the targeted DMMP impurities from spiked PWB.

  18. Evaluating and modeling the effects of surface sampling factors on the recovery of organic chemical attribution signatures using the accelerated diffusion sampler and solvent extraction.

    Science.gov (United States)

    Mo, Kai-For; Heredia-Langner, Alejandro; Fraga, Carlos G

    2017-03-01

    In this study, an experimental design matrix was created and executed to test the effects of various real-world factors on the ability of (1) the accelerated diffusion sampler with solid phase micro-extraction (ADS-SPME) and (2) solvent extraction to capture organic chemical attribution signatures (CAS) from dimethyl methylphosphonate (DMMP) spiked onto painted wall board (PWB) surfaces. The DMMP CAS organic impurities sampled by ADS-SPME and solvent extraction were analyzed by gas chromatography/mass spectrometry (GC/MS). The number of detected DMMP CAS impurities and their respective GC/MS peak areas were determined as a function of DMMP stock, DMMP spiked volume, exposure time, SPME sampling time, and ADS headspace pressure. Based on the statistical analysis of experimental results, several general conclusions are made: (1) the amount of CAS impurity detected using ADS-SPME and GC/MS was most influenced by spiked volume, stock, and ADS headspace pressure, (2) reduced ADS headspace pressure increased the amount of detected CAS impurity, as measured by GC/MS peak area, by up to a factor of 1.7-1.9 compared to ADS at ambient headspace pressure, (3) the ADS had no measurable effect on the number of detected DMMP impurities, that is, ADS (with and without reduced pressure) had no practical effect on the DMMP impurity profile collected from spiked PWB, and (4) solvent extraction out performed ADS-SPME in terms of consistently capturing all or most of the targeted DMMP impurities from spiked PWB.

  19. Extracting a Smooth Trend from a Time Series: A Modification of Singular Spectrum Analysis.

    Science.gov (United States)

    Solow, Andrew R.; Patwardhan, Anand

    1996-09-01

    Singular spectrum analysis is commonly used in climatology to extract a trend from a noisy time series. Implicit in this method is the association of trends with high variance. In many cases, it may be more natural to associate trends with smoothness. This paper describes how singular spectrum analysis can be modified to incorporate this idea. The modified approach is illustrated using the annual central England temperature series.

  20. Small Target Extraction Based on Independent Component Analysis for Hyperspectral Imagery

    Institute of Scientific and Technical Information of China (English)

    LU Wei; YU Xuchu

    2006-01-01

    A small target detection approach based on independent component analysis for hyperspectral data is put forward. In this algorithm, firstly the fast independent component analysis(FICA) is used to collect target information hided in high-dimensional data and projects them into low-dimensional space.Secondly, the feature images are selected with kurtosis .At last, small targets are extracted with histogram image segmentation which has been labeled by skewness.

  1. Image Analysis of Soil Micromorphology: Feature Extraction, Segmentation, and Quality Inference

    Directory of Open Access Journals (Sweden)

    Petros Maragos

    2004-06-01

    Full Text Available We present an automated system that we have developed for estimation of the bioecological quality of soils using various image analysis methodologies. Its goal is to analyze soilsection images, extract features related to their micromorphology, and relate the visual features to various degrees of soil fertility inferred from biochemical characteristics of the soil. The image methodologies used range from low-level image processing tasks, such as nonlinear enhancement, multiscale analysis, geometric feature detection, and size distributions, to object-oriented analysis, such as segmentation, region texture, and shape analysis.

  2. Factors Effecting Unemployment: A Cross Country Analysis

    Directory of Open Access Journals (Sweden)

    Aurangzeb

    2013-01-01

    Full Text Available This paper investigates macroeconomic determinants of the unemployment for India, China and Pakistan for the period 1980 to 2009. The investigation was conducted through co integration, granger causality and regression analysis. The variables selected for the study are unemployment, inflation, gross domestic product, exchange rate and the increasing rate of population. The results of regression analysis showed significant impact of all the variables for all three countries. GDP of Pakistan showed positive relation with the unemployment rate and the reason of that is the poverty level and underutilization of foreign investment. The result of granger causality showed that bidirectional causality does not exist between any of the variable for all three countries. Co integration result explored that long term relationship do exist among the variables for all the models. It is recommended that distribution of income needs to be improved for Pakistan in order to have positive impact of growth on the employment rate.

  3. ANALYSIS OF RISK FACTORS ECTOPIC PREGNANCY

    Directory of Open Access Journals (Sweden)

    Budi Santoso

    2017-04-01

    Full Text Available Introduction: Ectopic pregnancy is a pregnancy with extrauterine implantation. This situation is gynecologic emergency that contributes to maternal mortality. Therefore, early recognition, based on identification of the causes of ectopic pregnancy risk factors, is needed. Methods: The design descriptive observational. The samples were pregnant women who had ectopic pregnancy at Maternity Room, Emergency Unit, Dr. Soetomo Hospital, Surabaya, from 1 July 2008 to 1 July 2010. Sampling technique was total sampling using medical records. Result: Patients with ectopic pregnancy were 99 individuals out of 2090 pregnant women who searched for treatment in Dr. Soetomo Hospital. However, only 29 patients were accompanied with traceable risk factors. Discussion:. Most ectopic pregnancies were in the age group of 26-30 years, comprising 32 patients (32.32%, then in age groups of 31–35 years as many as 25 patients (25.25%, 18 patients in age group 21–25 years (18.18%, 17 patients in age group 36–40 years (17.17%, 4 patients in age group 41 years and more (4.04%, and the least was in age group of 16–20 years with 3 patients (3.03%. A total of 12 patients with ectopic pregnancy (41.38% had experience of abortion and 6 patients (20.69% each in groups of patients with ectopic pregnancy who used family planning, in those who used family planning as well as ectopic pregnancy patients with history of surgery. There were 2 patients (6.90% of the group of patients ectopic pregnancy who had history of surgery and history of abortion. The incidence rate of ectopic pregnancy was 4.73%, mostly in the second gravidity (34.34%, whereas the nulliparous have the highest prevalence of 39.39%. Acquired risk factors, i.e. history of operations was 10.34%, patients with family planning 20.69%, patients with history of abortion 41.38%, patients with history of abortion and operation 6.90% patients with family and history of abortion was 20.69%.

  4. Phytochemical analysis of the flower extracts of Rhododendron arboreum Sm. ssp. nilagiricum (Zenker) Tagg

    Institute of Scientific and Technical Information of China (English)

    Kiruba S; Mahesh M; Nisha SR; Miller Paul Z; Jeeva S

    2011-01-01

    Objective: To evaluate the preliminary phytochemical screening of the flower extracts of Rhododendron arboreum (R. arboreum) Sm. ssp. nilagiricum (Zenker) Tagg. Methods: The preliminary phytochemical screening was performed by the standard methods as described by Harborne. Results: The phytochemical analysis carried out on the flowers of R. arboreum Sm. ssp. nilagiricum (Zenker) Tagg showed the presence of phenols, saponins, steroids, tannin, xanthoprotein and coumarin. Conclusions:The present study suggested that the flower extracts of R. arboreum Sm. ssp. nilagiricum (Zenker) Tagg possess significant phytochemical constituents and it can be used as antimicrobial agents against clinically isolated pathogens.

  5. A kinetic analysis of strand breaks on large DNA induced by cigarette smoke extract

    Science.gov (United States)

    Kurita, Hirofumi; Takata, Tatsuya; Yasuda, Hachiro; Takashima, Kazunori; Mizuno, Akira

    2010-06-01

    We report a kinetic analysis of strand breakages on large DNA molecules induced by cigarette smoke extract (CSE), an extract of soluble cigarette smoke components. Previously, this DNA damage was analyzed by agarose gel electrophoresis, whereas we used fluorescence to kinetically analyze damage to individual DNA molecules. CSE caused a marked change in length of DNA molecules. The rate of CSE-induced double-strand breakage on large random-coiled DNA molecules was determined using a simple theoretical model, allowing the facile estimation of the rate of double-strand breaks on large DNA molecules.

  6. Simple, specific analysis of organophosphorus and carbamate pesticides in sediments using column extraction and gas chromatography

    Science.gov (United States)

    Belisle, A.A.; Swineford, D.M.

    1988-01-01

    A simple, specific procedure was developed for the analysis of organophosphorus and carbamate pesticides in sediment. The wet soil was mixed with anhydrous sodium sulfate to bind water and the residues were column extracted in acetone:methylene chloride (1:l,v/v). Coextracted water was removed by additional sodium sulfate packed below the sample mixture. The eluate was concentrated and analyzed directly by capillary gas chromatography using phosphorus and nitrogen specific detectors. Recoveries averaged 93 % for sediments extracted shortly after spiking, but decreased significantly as the samples aged.

  7. Analysis of Automated Modern Web Crawling and Testing Tools and Their Possible Employment for Information Extraction

    Directory of Open Access Journals (Sweden)

    Tomas Grigalis

    2012-04-01

    Full Text Available World Wide Web has become an enormously big repository of data. Extracting, integrating and reusing this kind of data has a wide range of applications, including meta-searching, comparison shopping, business intelligence tools and security analysis of information in websites. However, reaching information in modern WEB 2.0 web pages, where HTML tree is often dynamically modified by various JavaScript codes, new data are added by asynchronous requests to the web server and elements are positioned with the help of cascading style sheets, is a difficult task. The article reviews automated web testing tools for information extraction tasks.Article in Lithuanian

  8. PERFORMANCE ANALYSIS OF MULTI-TURN EXTRACTION FROM THE PROTON SYNCHROTRON TO THE SUPER PROTON SYNCHROTRON

    CERN Document Server

    Abernethy, Samuel

    2016-01-01

    Within CERN's accelerator complex, the extraction from the Proton Synchrotron to the Super Proton Synchrotron has been done using the so-called ``Continuous Transfer" (CT) method since the 1970's. A new technique, known as Multi-Turn Extraction (MTE), has now been implemented and is in full operation. This report examines a holistic performance analysis of the novel technique in multiple aspects of the accelerator complex, as well as a direct comparison with its predecessor, CT, from the implementation of MTE in 2010 until the end of 2015.

  9. A microfluidic cigarette smoke collecting platform for simultaneous sample extraction and multiplex analysis.

    Science.gov (United States)

    Hu, Shan-Wen; Xu, Bi-Yi; Qiao, Shu; Zhao, Ge; Xu, Jing-Juan; Chen, Hong-Yuan; Xie, Fu-Wei

    2016-04-01

    In this work, we report a novel microfluidic gas collecting platform aiming at simultaneous sample extraction and multiplex mass spectrometry (MS) analysis. An alveolar-mimicking elastic polydimethylsiloxane (PDMS) structures was designed to move dynamically driven by external pressure. The movement was well tuned both by its amplitude and rhythm following the natural process of human respiration. By integrating the alveolar units into arrays and assembling them to gas channels, a cyclic contraction/expansion system for gas inhale and exhale was successfully constructed. Upon equipping this system with a droplet array on the alveolar array surface, we were able to get information of inhaled smoke in a new strategy. Here, with cigarette smoke as an example, analysis of accumulation for target molecules during passive smoking is taken. Relationships between the breathing times, distances away from smokers and inhaled content of nicotine are clarified. Further, by applying different types of extraction solvent droplets on different locations of the droplet array, simultaneous extraction of nicotine, formaldehyde and caproic acid in sidestream smoke (SS) are realized. Since the extract droplets are spatially separated, they can be directly analyzed by MS which is fast and can rid us of all complex sample separation and purification steps. Combining all these merits, this small, cheap and portable platform might find wide application in inhaled air pollutant analysis both in and outdoors. Copyright © 2015 Elsevier B.V. All rights reserved.

  10. A simple method of genomic DNA extraction from human samples for PCR-RFLP analysis.

    Science.gov (United States)

    Ghatak, Souvik; Muthukumaran, Rajendra Bose; Nachimuthu, Senthil Kumar

    2013-12-01

    Isolation of DNA from blood and buccal swabs in adequate quantities is an integral part of forensic research and analysis. The present study was performed to determine the quality and the quantity of DNA extracted from four commonly available samples and to estimate the time duration of the ensuing PCR amplification. Here, we demonstrate that hair and urine samples can also become an alternate source for reliably obtaining a small quantity of PCR-ready DNA. We developed a rapid, cost-effective, and noninvasive method of sample collection and simple DNA extraction from buccal swabs, urine, and hair using the phenol-chloroform method. Buccal samples were subjected to DNA extraction, immediately or after refrigeration (4-6°C) for 3 days. The purity and the concentration of the extracted DNA were determined spectrophotometerically, and the adequacy of DNA extracts for the PCR-based assay was assessed by amplifying a 1030-bp region of the mitochondrial D-loop. Although DNA from all the samples was suitable for PCR, the blood and hair samples provided a good quality DNA for restriction analysis of the PCR product compared with the buccal swab and urine samples. In the present study, hair samples proved to be a good source of genomic DNA for PCR-based methods. Hence, DNA of hair samples can also be used for the genomic disorder analysis in addition to the forensic analysis as a result of the ease of sample collection in a noninvasive manner, lower sample volume requirements, and good storage capability.

  11. Back to Basics--The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities.

    Directory of Open Access Journals (Sweden)

    Mads Albertsen

    Full Text Available DNA extraction and primer choice have a large effect on the observed community structure in all microbial amplicon sequencing analyses. Although the biases are well known, no comprehensive analysis has been conducted in activated sludge communities. In this study we systematically explored the impact of a number of parameters on the observed microbial community: bead beating intensity, primer choice, extracellular DNA removal, and various PCR settings. In total, 176 samples were subjected to 16S rRNA amplicon sequencing, and selected samples were investigated through metagenomics and metatranscriptomics. Quantitative fluorescence in situ hybridization was used as a DNA extraction-independent method for qualitative comparison. In general, an effect on the observed community was found on all parameters tested, although bead beating and primer choice had the largest effect. The effect of bead beating intensity correlated with cell-wall strength as seen by a large increase in DNA from Gram-positive bacteria (up to 400%. However, significant differences were present at lower phylogenetic levels within the same phylum, suggesting that additional factors are at play. The best primer set based on in silico analysis was found to underestimate a number of important bacterial groups. For 16S rRNA gene analysis in activated sludge we recommend using the FastDNA SPIN Kit for Soil with four times the normal bead beating and V1-3 primers.

  12. Back to Basics--The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities.

    Science.gov (United States)

    Albertsen, Mads; Karst, Søren M; Ziegler, Anja S; Kirkegaard, Rasmus H; Nielsen, Per H

    2015-01-01

    DNA extraction and primer choice have a large effect on the observed community structure in all microbial amplicon sequencing analyses. Although the biases are well known, no comprehensive analysis has been conducted in activated sludge communities. In this study we systematically explored the impact of a number of parameters on the observed microbial community: bead beating intensity, primer choice, extracellular DNA removal, and various PCR settings. In total, 176 samples were subjected to 16S rRNA amplicon sequencing, and selected samples were investigated through metagenomics and metatranscriptomics. Quantitative fluorescence in situ hybridization was used as a DNA extraction-independent method for qualitative comparison. In general, an effect on the observed community was found on all parameters tested, although bead beating and primer choice had the largest effect. The effect of bead beating intensity correlated with cell-wall strength as seen by a large increase in DNA from Gram-positive bacteria (up to 400%). However, significant differences were present at lower phylogenetic levels within the same phylum, suggesting that additional factors are at play. The best primer set based on in silico analysis was found to underestimate a number of important bacterial groups. For 16S rRNA gene analysis in activated sludge we recommend using the FastDNA SPIN Kit for Soil with four times the normal bead beating and V1-3 primers.

  13. Densitometric HPTLC analysis of 8-gingerol in Zingiber officinale extract and ginger-containing dietary supplements, teas and commercial creams

    Institute of Scientific and Technical Information of China (English)

    Prawez Alam

    2013-01-01

    Objective: To develop and validate a simple, accurate HPTLC method for the analysis of 8-gingerol and to determine the quantity of 8-gingerol in Zingiber officinale extract and ginger-containing dietary supplements, teas and commercial creams. Methods:The analysis was performed on 10×20 cm aluminium-backed plates coated with 0.2 mm layers of silica gel 60 F254 (E-Merck, Germany) with n-hexane: ethyl acetate 60: 40 (v/v) as mobile phase. Camag TLC Scanner III was used for the UV densitometric scanning at 569. Results:This system was found to give a compact spot of 8-gingerol at retention factor (Rf) value of (0.39±0.04) and linearity was found in the ranges 50-500 ng/spot (r2=0.9987). Limit of detection (12.76 ng/spot), limit of quantification (26.32 ng/spot), accuracy (less than 2 %) and recovery (ranging from 98.22-99.20) were found satisfactory. Conclusions:The HPTLC method developed for quantification of 8-gingerol was found to be simple, accurate, reproducible, sensitive and is applicable to the analysis of 8-gingerol in Zingiber officinale extract and ginger-containing dietary supplements, teas and commercial creams.

  14. Extraction, Identification and Quantitative HPLC Analysis of Flavonoids From Fruit Extracts of Arbutus unedo L from Tiaret Area (Western Algeria

    Directory of Open Access Journals (Sweden)

    Khadidja Bouzid

    2014-12-01

    Full Text Available The aim of the current study was to evaluate the total phenolic, flavonoid content and to investigate the antioxidant capacities of the fruit extracts of Arbutus unedo L. that grows in Tiaret area (Western Algeria. First we have extracted the fruit by some non-polar solvent (chloroform, ethyl acetate, 1-butanol. Total phenolic content and total flavonoid content were evaluated according to the Folin-Ciocalteu procedure, and a colorimetric method, respectively. Extracts content was determined by using a high-performance liquid chromatography (HPLC-UV method. The total phenolic contents of A.unedo L. varied between 12.75±0.06 to 34.17±1.36 mg gallic acid equivalent/g of dry weight of extract. The total flavonoid varied from 2.18±0.10 to 6.54±1.14 mg catechin equivalent/g. The antioxidant potential of all extracts was evaluated using 1,1-diphenyl-2-picrylhydrazyl (DPPH free radical scavenging activity, the IC50 of acetate ethyl was the best by 0,009 mg/ml may due to the phenolic compound, in the second was the chloroform extract by IC50=0,015mg/ml, in the third was butanol extract by IC50= 0,022 mg/ml and in the last was water extract by IC50= 0,048mg/ml. the antioxidant activity of all extracts was better than ascorbic acid. The extract obtained under optimum conditions was analyzed by HPLC and five flavonoid compounds were identified; they are catechin, apiginin, silybin, fisetine and naringin.

  15. Efficient analysis of selected estrogens using fabric phase sorptive extraction and high performance liquid chromatography-fluorescence detection.

    Science.gov (United States)

    Kumar, Rajesh; Gaurav; Heena; Malik, Ashok Kumar; Kabir, Abuzar; Furton, Kenneth G

    2014-09-12

    A simple, fast and sensitive analytical method using fabric phase sorptive extraction (FPSE) followed by high performance liquid chromatography with fluorescence detection (HPLC-FLD) has been developed for efficient quantification of biologically important molecules e.g., 17α-ethynylestradiol (EE2), β-estradiol (E2) and bisphenol A (BPA). FPSE is a new sorptive extraction technique that integrates the advantages of permeable sol-gel derived hybrid organic-inorganic sorbents with flexible and permeable fabric substrates, resulting in a highly efficient and sensitive extraction media that can be introduced directly into any kind of fluidic matrix. Various factors affecting the performance of FPSE technique were optimized. The chromatographic separation was carried using mobile phase acetonitrile/methanol/water (30:15:55; v/v) at a flow rate 1.0mL/min on C18 column with fluorescence detection (λex=280nm and λem=310nm). The calibration curves of the target analytes were prepared with good correlation coefficient values (R(2)>0.992). Limit of detection (LOD) values range from 20 to 42pg/mL. The developed method was applied successfully for the analysis of estrogen molecules in urine and various kinds of aqueous samples.

  16. Preliminary phytochemical analysis, antibacterial, antifungal and anticandidal activities of successive extracts of Crossandra infundibuliformis

    Institute of Scientific and Technical Information of China (English)

    MadhumithaG; SaralAM

    2011-01-01

    Objective:To investigate the phytochemical, antibacterial, antifungal and anticandidal activity of successive extracts of Crossandra infundibuliformis (Acanthaceae) leaves. Methods:Preliminary screening on the presence of alkaloids, saponins, phytosterols, phenolic compounds, flavanoids, tannins, carbohydrates, terpenoids, oils and fats were carried out by phytochemical analysis. The antibacterial, antifungal and anticandidal activities were done by agar well diffusion technique. Results:The successive extracts have an array of chemical constituents and the MIC values of antibacterial activity ranges from 0.007 8 to 0.015 0μg/mL. In case of antifungal and anticandidal activities the MIC values were between 0.125 and 0.250μg/mL. Conclusions:These findings demonstrate that the leaf extracts of C. infundibuliformis presents excellent antimicrobial activities and thus have great potential as a source for natural health care products.

  17. Automated DNA extraction of single dog hairs without roots for mitochondrial DNA analysis.

    Science.gov (United States)

    Bekaert, Bram; Larmuseau, Maarten H D; Vanhove, Maarten P M; Opdekamp, Anouschka; Decorte, Ronny

    2012-03-01

    Dogs are intensely integrated in human social life and their shed hairs can play a major role in forensic investigations. The overall aim of this study was to validate a semi-automated extraction method for mitochondrial DNA analysis of telogenic dog hairs. Extracted DNA was amplified with a 95% success rate from 43 samples using two new experimental designs in which the mitochondrial control region was amplified as a single large (± 1260 bp) amplicon or as two individual amplicons (HV1 and HV2; ± 650 and 350 bp) with tailed-primers. The results prove that the extraction of dog hair mitochondrial DNA can easily be automated to provide sufficient DNA yield for the amplification of a forensically useful long mitochondrial DNA fragment or alternatively two short fragments with minimal loss of sequence in case of degraded samples.

  18. Feature Extraction of Gesture Recognition Based on Image Analysis for Different Environmental Conditions

    Directory of Open Access Journals (Sweden)

    Rahul A. Dedakiya

    2015-05-01

    Full Text Available Gesture recognition system received great attention in the recent few years because of its manifoldness applications and the ability to interact with machine efficiently through human computer interaction. Gesture is one of human body languages which are popularly used in our daily life. It is a communication system that consists of hand movements and facial expressions via communication by actions and sights. This research mainly focuses on the research of gesture extraction and finger segmentation in the gesture recognition. In this paper, we have used image analysis technologies to create an application by encoding in MATLAB program. We will use this application to segment and extract the finger from one specific gesture. This paper is aimed to give gesture recognition in different natural conditions like dark and glare condition, different distances condition and similar object condition then collect the results to calculate the successful extraction rate.

  19. Phylogenetic spectrum and analysis of antibacterial activities of leaf extracts from plants of the genus Rhododendron.

    Science.gov (United States)

    Rezk, Ahmed; Nolzen, Jennifer; Schepker, Hartwig; Albach, Dirk C; Brix, Klaudia; Ullrich, Matthias S

    2015-03-18

    Plants are traditionally used for medicinal treatment of numerous human disorders including infectious diseases caused by microorganisms. Due to the increasing resistance of many pathogens to commonly used antimicrobial agents, there is an urgent need for novel antimicrobial compounds. Plants of the genus Rhododendron belong to the woody representatives of the family Ericaceae, which are typically used in a range of ethno-medical applications. There are more than one thousand Rhododendron species worldwide. The Rhododendron-Park Bremen grows plants representing approximately 600 of the known Rhododendron species, and thus enables research involving almost two thirds of all known Rhododendron species. Twenty-six bacterial species representing different taxonomic clades have been used to study the antimicrobial potential of Rhododendron leaf extracts. Agar diffusion assay were conducted using 80% methanol crude extracts derived from 120 Rhododendron species. Data were analyzed using principal component analysis and the plant-borne antibacterial activities grouped according the first and second principal components. The leaf extracts of 17 Rhododendron species exhibited significant growth-inhibiting activities against Gram-positive bacteria. In contrast, only very few of the leaf extracts affected the growth of Gram-negative bacteria. All leaf extracts with antimicrobial bioactivity were extracted from representatives of the subgenus Rhododendron, with 15 from the sub-section Rhododendron and two belonging to the section Pogonanthum. The use of bacterial multidrug efflux pump mutants revealed remarkable differences in the susceptibility towards Rhododendron leaf extract treatment. For the first time, our comprehensive study demonstrated that compounds with antimicrobial activities accumulate in the leaves of certain Rhododendron species, which mainly belong to a particular subgenus. The results suggested that common genetic traits are responsible for the production of

  20. Plant extracts for the topical management of psoriasis: a systematic review and meta-analysis.

    Science.gov (United States)

    Deng, S; May, B H; Zhang, A L; Lu, C; Xue, C C L

    2013-10-01

    Patients with psoriasis frequently use preparations of plant extracts. Physicians need to be aware of the current evidence concerning these products. This review evaluates the efficacy and safety of preparations of plant extracts used topically for psoriasis. Searches were conducted in PubMed, Embase, the Cochrane library, two Chinese databases and article reference lists. Randomized controlled trials investigating extracts of single plants were included. Preparations of multiple plants and combinations of plant extracts plus conventional therapies were excluded. Two authors conducted searches, extracted data and assessed risk of bias. Outcomes used in meta-analyses were: clinical efficacy, Psoriasis Area and Severity Index score, and quality of life and symptom scores. The 12 included studies investigated extracts of: Mahonia aquifolium (n = 5), Aloe vera (n = 3), indigo naturalis (n = 2), kukui nut oil (n = 1) and Camptotheca acuminata nut (n = 1). Methodological quality was variable. Six studies provided data suitable for meta-analysis of clinical efficacy, and five were vs. placebo (relative risk 3·37, 95% confidence interval 1·36-8·33). Experimental studies indicate components of indigo naturalis, Mahonia and Camptotheca have anti-inflammatory, antiproliferative and other actions of relevance to psoriasis. The clinical trial evidence provides limited support for preparations containing extracts of M. aquifolium, indigo naturalis and Aloe vera for the topical management of plaque psoriasis based on multiple studies. No serious adverse events were reported. Because of the small size of most studies and methodological weaknesses, strong conclusions cannot be made. The magnitudes of any effects cannot be measured with accuracy, so it is difficult to assess the clinical relevance of these preparations.

  1. Comparing DNA extraction methods for analysis of botanical materials found in anti-diabetic supplements.

    Science.gov (United States)

    Llongueras, Jose P; Nair, Saraswathy; Salas-Leiva, Dayana; Schwarzbach, Andrea E

    2013-03-01

    A comparative performance evaluation of DNA extraction methods from anti-diabetic botanical supplements using various commercial kits was conducted, to determine which produces the best quality DNA suitable for PCR amplification, sequencing and species identification. All plant materials involved were of suboptimal quality showing various levels of degradation and therefore representing real conditions for testing herbal supplements. Eight different DNA extraction methods were used to isolate genomic DNA from 13 medicinal plant products. Two methods for evaluation, DNA concentration measurements that included absorbance ratios as well as PCR amplifiability, were used to determine quantity and quality of extracted DNA. We found that neither DNA concentrations nor commonly used UV absorbance ratio measurements at A(260)/A(280) between 1.7 and 1.9 are suitable for globally predicting PCR success in these plant samples, and that PCR amplifiablity itself was the best indicator of extracted product quality. However, our results suggest that A(260)/A(280) ratios below about 1.3 and above 2.3 indicated a DNA quality too poor to amplify. Therefore, A(260)/A(280) measurements are not useful to identify samples that likely will amplify but can be used to exclude samples that likely will not amplify reducing the cost for unnecessarily subjecting samples to PCR. The two Nucleospin(®) plant II kit extraction methods produced the most pure and amplifiable genomic DNA extracts. Our results suggest that there are clear, discernable differences between extraction methods for low quality plant samples in terms of producing contamination-free, high-quality genomic DNA to be used for further analysis.

  2. Effects of Pomegranate Extract Supplementation on Cardiovascular Risk Factors and Physical Function in Hemodialysis Patients.

    Science.gov (United States)

    Wu, Pei-Tzu; Fitschen, Peter J; Kistler, Brandon M; Jeong, Jin Hee; Chung, Hae Ryong; Aviram, Michael; Phillips, Shane A; Fernhall, Bo; Wilund, Kenneth R

    2015-09-01

    The purpose of this study was to evaluate the effects of oral supplementation with pomegranate extract on cardiovascular risk, physical function, oxidative stress, and inflammation in hemodialysis (HD) patients. Thirty-three HD subjects were randomized to the pomegranate (POM) or placebo (CON) group. Patients in POM ingested a 1000 mg capsule of a purified pomegranate polyphenol extract 7 days/week for 6 months. Individuals in CON ingested a noncaloric placebo capsule using the same protocol. Measurements were conducted at baseline and repeated 6 months following the start of the intervention. Brachial blood pressure (BP) was obtained using an automatic digital BP monitor. Cardiovascular risk was assessed using ultrasound and arterial tonometry. Blood samples were collected for the measurements of circulating markers of inflammation, oxidative stress, and antioxidant capacity. Muscle strength and physical function were assessed by isokinetic dynamometry, a validated shuttle walk test, and a battery of tests to assess functional fitness. Systolic blood pressure and diastolic blood pressure were reduced by 24 ± 13.7 and 10 ± 5.3 mmHg, respectively, in POM (P pomegranate supplementation had no effect on other markers of cardiovascular disease risk, inflammation and oxidative stress, or measures of physical function and muscle strength. While pomegranate extract supplementation may reduce BP and increase the antioxidant activity in HD patients, it does not improve other markers of cardiovascular risk, physical function, or muscle strength.

  3. [Dan'e-fukang soft extract for dysmenorrhea: a meta-analysis].

    Science.gov (United States)

    Yu, Kun; Zhang, Zhen-dong; Xiao, Zheng; Wei, Wei; Wang, Zheng-long

    2014-07-01

    To assess the efficacy and safety of Dan'e-fukang soft extract for dysmenorrhea by meta-analysis. Cochrane Controlled Trials Register, PubMed, EMBASE, CBM, VIP, Wanfang Data, and CNKI databases were searched. Results of randomized controlled trials were also harvested from pharmaceutical companies by manual search. Meta-analysis was carried out according to the method provided by the Cochrane Collaboration with RevMan5.0 software. Twelve Chinese papers were selected, and 1213 patients were included. Significant difference in recovery rate was found between Dan'e-fukang soft extract group and other drugs group (RR=1.33, 95%CI: 1.02-1.75, P0.05). No statistical difference was noticed in total effective rate between two groups (RR=1.04, 95%CI: 1.00-1.08, P>0.05). A statistical difference in improvement of dysmenorrhea symptoms was found before and after treatment in both Dan'e-fukang soft extract group and other drugs group (MD=5.79, 95%CI: 5.01-6.56, P0.05) and after treatment (MD=-0.94, 95%CI: -2.11-0.23, P>0.05). Oral administration of Dan'e-fukang soft extract caused only mild gastrointestinal discomfort, but other drugs had more adverse effects including serious gastrointestinal reaction, severe liver dysfunction, vaginal bleeding, and female masculinity. The existing evidence shows that Dan'e-fukang soft extract has the same efficacy as other drugs in treatment of dysmenorrheal. Because of the quality of the included studies was limited, the evidence of the efficacy and safety of Dan'e-fukang soft extract was not strong, and high-quality randomized trials with large samples are needed.

  4. Comparison of two commercial DNA extraction kits for the analysis of nasopharyngeal bacterial communities

    Directory of Open Access Journals (Sweden)

    Keith A. Crandall

    2016-04-01

    Full Text Available Characterization of microbial communities via next-generation sequencing (NGS requires an extraction ofmicrobial DNA. Methodological differences in DNA extraction protocols may bias results and complicate inter-study comparisons. Here we compare the effect of two commonly used commercial kits (Norgen and Qiagenfor the extraction of total DNA on estimatingnasopharyngeal microbiome diversity. The nasopharynxis a reservoir for pathogens associated with respiratory illnesses and a key player in understandingairway microbial dynamics. Total DNA from nasal washes corresponding to 30 asthmatic children was extracted using theQiagenQIAamp DNA and NorgenRNA/DNA Purification kits and analyzed via IlluminaMiSeq16S rRNA V4 ampliconsequencing. The Norgen samples included more sequence reads and OTUs per sample than the Qiagen samples, but OTU counts per sample varied proportionallybetween groups (r = 0.732.Microbial profiles varied slightly between sample pairs, but alpha- and beta-diversity indices (PCoAand clustering showed highsimilarity between Norgen and Qiagenmicrobiomes. Moreover, no significant differences in community structure (PERMANOVA and adonis tests and taxa proportions (Kruskal-Wallis test were observed betweenkits. Finally, aProcrustes analysis also showed low dissimilarity (M2 = 0.173; P< 0.001 between the PCoAs of the two DNA extraction kits. Contrary to what has been observed in previous studies comparing DNA extraction methods, our 16S NGS analysis of nasopharyngeal washes did not reveal significant differences in community composition or structure between kits. Our findingssuggest congruence between column-based chromatography kits and supportthe comparison of microbiomeprofilesacross nasopharyngeal metataxonomic studies.

  5. Chemical Analysis of Extracts from Newfoundland Berries and Potential Neuroprotective Effects

    Directory of Open Access Journals (Sweden)

    Mohammad Z. Hossain

    2016-10-01

    Full Text Available Various species of berries have been reported to contain several polyphenolic compounds, such as anthocyanins and flavonols, which are known to possess high antioxidant activity and may be beneficial for human health. To our knowledge, a thorough chemical analysis of polyphenolics in species of these plants native to Newfoundland, Canada has not been conducted. The primary objective of this study was to determine the polyphenolic compounds present in commercial extracts from Newfoundland berries, which included blueberries (V. angustifolium, lingonberries (V. vitis-idaea and black currant (Ribes lacustre. Anthocyanin and flavonol glycosides in powdered extracts from Ribes lacustre and the Vaccinium species were identified using the high performance liquid chromatographic (HPLC separation method with mass spectrometric (MS detection. The identified compounds were extracted from dried berries by various solvents via ultrasonication followed by centrifugation. A reverse-phase analytical column was employed to identify the retention time of each chemical component before submission for LC–MS analysis. A total of 21 phenolic compounds were tentatively identified in the three species. Further, we tested the effects of the lingonberry extract for its ability to protect neurons and glia from trauma utilizing an in vitro model of cell injury. Surprisingly, these extracts provided complete protection from cell death in this model. These findings indicate the presence of a wide variety of anthocyanins and flavonols in berries that grow natively in Newfoundland. These powdered extracts maintain these compounds intact despite being processed from berry fruit, indicating their potential use as dietary supplements. In addition, these recent findings and previous data from our lab demonstrate the ability of compounds in berries to protect the nervous system from traumatic insults.

  6. Comparison of Different Protein Extraction Methods for Gel-Based Proteomic Analysis of Ganoderma spp.

    Science.gov (United States)

    Al-Obaidi, Jameel R; Saidi, Noor Baity; Usuldin, Siti Rokhiyah Ahmad; Hussin, Siti Nahdatul Isnaini Said; Yusoff, Noornabeela Md; Idris, Abu Seman

    2016-04-01

    Ganoderma species are a group of fungi that have the ability to degrade lignin polymers and cause severe diseases such as stem and root rot and can infect economically important plants and perennial crops such as oil palm, especially in tropical countries such as Malaysia. Unfortunately, very little is known about the complex interplay between oil palm and Ganoderma in the pathogenesis of the diseases. Proteomic technologies are simple yet powerful tools in comparing protein profile and have been widely used to study plant-fungus interaction. A critical step to perform a good proteome research is to establish a method that gives the best quality and a wide coverage of total proteins. Despite the availability of various protein extraction protocols from pathogenic fungi in the literature, no single extraction method was found suitable for all types of pathogenic fungi. To develop an optimized protein extraction protocol for 2-DE gel analysis of Ganoderma spp., three previously reported protein extraction protocols were compared: trichloroacetic acid, sucrose and phenol/ammonium acetate in methanol. The third method was found to give the most reproducible gels and highest protein concentration. Using the later method, a total of 10 protein spots (5 from each species) were successfully identified. Hence, the results from this study propose phenol/ammonium acetate in methanol as the most effective protein extraction method for 2-DE proteomic studies of Ganoderma spp.

  7. A comprehensive method for extraction and quantitative analysis of sterols and secosteroids from human plasma.

    Science.gov (United States)

    McDonald, Jeffrey G; Smith, Daniel D; Stiles, Ashlee R; Russell, David W

    2012-07-01

    We describe the development of a method for the extraction and analysis of 62 sterols, oxysterols, and secosteroids from human plasma using a combination of HPLC-MS and GC-MS. Deuterated standards are added to 200 μl of human plasma. Bulk lipids are extracted with methanol:dichloromethane, the sample is hydrolyzed using a novel procedure, and sterols and secosteroids are isolated using solid-phase extraction (SPE). Compounds are resolved on C₁₈ core-shell HPLC columns and by GC. Sterols and oxysterols are measured using triple quadrupole mass spectrometers, and lathosterol is measured using GC-MS. Detection for each compound measured by HPLC-MS was ∪ 1 ng/ml of plasma. Extraction efficiency was between 85 and 110%; day-to-day variability showed a relative standard error of <10%. Numerous oxysterols were detected, including the side chain oxysterols 22-, 24-, 25-, and 27-hydroxycholesterol, as well as ring-structure oxysterols 7α- and 4β-hydroxycholesterol. Intermediates from the cholesterol biosynthetic pathway were also detected, including zymosterol, desmosterol, and lanosterol. This method also allowed the quantification of six secosteroids, including the 25-hydroxylated species of vitamins D₂ and D₃. Application of this method to plasma samples revealed that at least 50 samples could be extracted in a routine day.

  8. Phytochemical analysis with the antioxidant and aldose reductase inhibitory capacities of Tephrosia humilis aerial parts' extracts.

    Science.gov (United States)

    Plioukas, Michael; Gabrieli, Chrysi; Lazari, Diamanto; Kokkalou, Eugene

    2016-06-01

    The aerial parts of Tephrosia humilis were tested about their antioxidant potential, their ability to inhibit the aldose/aldehyde reductase enzymes and their phenolic content. The plant material was exhaustively extracted with petroleum ether, dichloromethane and methanol, consecutively. The concentrated methanol extract was re-extracted, successively, with diethyl ether, ethyl acetate and n-butanol. All extracts showed significant antioxidant capacity, but the most effective was the ethyl acetate extract. As about the aldose reductase inhibition, all fractions, except the aqueous, were strong inhibitors of the enzyme, with the n-butanolic and ethyl acetate fractions to inhibit the enzyme above 75%. These findings provide support to the ethnopharmacological usage of the plant as antioxidant and validate its potential to act against the long-term diabetic complications. The phytochemical analysis showed the presence of 1,4-dihydroxy-3,4-(epoxyethano)-5-cyclohexene(1), cleroindicin E(2), lupeol(3), methyl p-coumarate(4), methyl 4-hydroxybenzoate(5), prunin(6), 5,7,2',5'-tetrahydroxyflavanone 7-rutinoside(7), protocatechuic acid(8), luteolin 7-glucoside(9), apigenin(10), naringin(11), rhoifolin(12) and luteolin 7-glucuronate(13).

  9. Revealing the metabonomic variation of rosemary extracts using 1H NMR spectroscopy and multivariate data analysis.

    Science.gov (United States)

    Xiao, Chaoni; Dai, Hui; Liu, Hongbing; Wang, Yulan; Tang, Huiru

    2008-11-12

    The molecular compositions of rosemary ( Rosmarinus officinalis L.) extracts and their dependence on extraction solvents, seasons, and drying processes were systematically characterized using NMR spectroscopy and multivariate data analysis. The results showed that the rosemary metabonome was dominated by 33 metabolites including sugars, amino acids, organic acids, polyphenolic acids, and diterpenes, among which quinate, cis-4-glucosyloxycinnamic acid, and 3,4,5-trimethoxyphenylmethanol were found in rosemary for the first time. Compared with water extracts, the 50% aqueous methanol extracts contained higher levels of sucrose, succinate, fumarate, malonate, shikimate, and phenolic acids, but lower levels of fructose, glucose, citrate, and quinate. Chloroform/methanol was an excellent solvent for selective extraction of diterpenes. From February to August, the levels of rosmarinate and quinate increased, whereas the sucrose level decreased. The sun-dried samples contained higher concentrations of rosmarinate, sucrose, and some amino acids but lower concentrations of glucose, fructose, malate, succinate, lactate, and quinate than freeze-dried ones. These findings will fill the gap in the understanding of rosemary composition and its variations.

  10. Analysis of Socio-Economic Factors Influencing Farmers' Adoption ...

    African Journals Online (AJOL)

    Analysis of Socio-Economic Factors Influencing Farmers' Adoption of Rice ... Farming experience, household size, farm size and extension contact ... gender, market availability, education, extension contact, labour availability and farm size.

  11. Exploring Technostress: Results of a Large Sample Factor Analysis

    Directory of Open Access Journals (Sweden)

    Steponas Jonušauskas

    2016-06-01

    Full Text Available With reference to the results of a large sample factor analysis, the article aims to propose the frame examining technostress in a population. The survey and principal component analysis of the sample consisting of 1013 individuals who use ICT in their everyday work was implemented in the research. 13 factors combine 68 questions and explain 59.13 per cent of the answers dispersion. Based on the factor analysis, questionnaire was reframed and prepared to reasonably analyze the respondents’ answers, revealing technostress causes and consequences as well as technostress prevalence in the population in a statistically validated pattern. A key elements of technostress based on factor analysis can serve for the construction of technostress measurement scales in further research.

  12. Risk Factor Analysis for Oral Precancer among Slum Dwellers in ...

    African Journals Online (AJOL)

    Rajasthan Dental College, Jaipur, Rajasthan, 1Dental Wing, All India Institute of Medical Sciences (AIIMS), Bhopal,. 4Department of Public ... Keywords: Oral cancer, Risk factor analysis, Slum dwellers. Access this .... hygiene aid used in India.

  13. Meta analysis of risk factors for colorectal cancer

    Institute of Scientific and Technical Information of China (English)

    Kun Chen; Jiong-Liang Qiu; Yang Zhang; Yu-Wan Zhao

    2003-01-01

    AIM: To study the risk factors for colorectal cancer in China.METHODS: A meta-analysis of the risk factors of colorectal cancer was conducted for 14 case-control studies, and reviewed 14 reports within 13 years which included 5034cases and 5205 controls. Dersimonian and Laird random effective models were used to process the results.RESULTS: Meta analysis of the 14 studies demonstrated that proper physical activites and dietary fibers were protective factors (pooled OR<0.8), while fecal mucohemorrhage,chronic diarrhea and polyposis were highly associated with colorectal cancer (all pooled OR>4). The stratified results showed that different OR values of some factors were due to geographic factors or different resourses.CONCLUSION: Risks of colorectal cancer are significantly associated with the histories of intestinal diseases or relative symptoms, high lipid diet, emotional trauma and family history of cancers. The suitable physical activities and dietary fibers are protective factors.

  14. Text mining factor analysis (TFA) in green tea patent data

    Science.gov (United States)

    Rahmawati, Sela; Suprijadi, Jadi; Zulhanif

    2017-03-01

    Factor analysis has become one of the most widely used multivariate statistical procedures in applied research endeavors across a multitude of domains. There are two main types of analyses based on factor analysis: Exploratory Factor Analysis (EFA) and Confirmatory Factor Analysis (CFA). Both EFA and CFA aim to observed relationships among a group of indicators with a latent variable, but they differ fundamentally, a priori and restrictions made to the factor model. This method will be applied to patent data technology sector green tea to determine the development technology of green tea in the world. Patent analysis is useful in identifying the future technological trends in a specific field of technology. Database patent are obtained from agency European Patent Organization (EPO). In this paper, CFA model will be applied to the nominal data, which obtain from the presence absence matrix. While doing processing, analysis CFA for nominal data analysis was based on Tetrachoric matrix. Meanwhile, EFA model will be applied on a title from sector technology dominant. Title will be pre-processing first using text mining analysis.

  15. Prevalence and Risk Factors of Gestational Diabetes in Iran: A Systematic Review and Meta-Analysis

    Science.gov (United States)

    JAFARI-SHOBEIRI, Mehri; GHOJAZADEH, Morteza; AZAMI-AGHDASH, Saber; NAGHAVI-BEHZAD, Mohammad; PIRI, Reza; POURALI-AKBAR, Yasmin; NASROLLAH-ZADEH, Raheleh; BAYAT-KHAJEH, Parvaneh; MOHAMMADI, Marzieh

    2015-01-01

    Background: Gestational Diabetes (GD) is one of the major public health issues. The purpose of the present study was to perform a systematic review and meta-analysis to assess the risk factors and prevalence rate of this disorder in Iran. Methods: This systematic review and meta- analysis article was prepared using the databases of Science Direct, Pub-Med, Scopus, Magiran, Iranmedex and SID, Google search engine, Gray Literature, reference lists check and hand searching using keywords such as “prevalence”, “gestational diabetes mellitus”, “GDM”, “risk factor*”, “Iran” and “Postpartum Diabetes”. The selected papers were fully reviewed and the required information for the systematic review was extracted and summarized using extraction table in Microsoft Office Excel software. Results: Twenty-four of 1011 papers were quite relevant to the objectives of the review so they were included. The mean age of the participants was 29.43±4.97 yr and the prevalence of GDM was 3.41% (the highest and the lowest prevalence rates were 18.6% and 1.3% respectively). Among the influential factors mentioned in the literature, potential causes of GDM are gestational age, history of gestational diabetes, family history of diabetes, body mass index, abortions and parity, and history of macrosomia. Conclusion: Considering the high prevalence of postpartum diabetes and its related factors in Iran, strategic planning for disease prevention and reduction is inevitable. PMID:26587467

  16. Prevalence and Risk Factors of Gestational Diabetes in Iran: A Systematic Review and Meta-Analysis

    Directory of Open Access Journals (Sweden)

    Mehri JAFARI-SHOBEIRI JAFARI-SHOBEIRI

    2015-10-01

    Full Text Available Background: Gestational Diabetes (GD is one of the major public health issues. The purpose of the present study was to perform a systematic review and meta-analysis to assess the risk factors and prevalence rate of this disorder in Iran.Methods: This systematic review and meta- analysis article was prepared using the databases of Science Direct, Pub-Med, Scopus, Magiran, Iranmedex and SID, Google search engine, Gray Literature, reference lists check and hand searching using keywords such as "prevalence", "gestational diabetes mellitus", "GDM", "risk factor*", "Iran" and "Postpartum Diabetes". The selected papers were fully reviewed and the required information for the systematic re-view was extracted and summarized using extraction table in Microsoft Office Excel software.Results: Twenty-four of 1011 papers were quite relevant to the objectives of the review so they were included. The mean age of the participants was 29.43±4.97 yr and the prevalence of GDMwas 3.41% (the highest and the lowest prevalence rates were 18.6% and 1.3% respectively. Among the influential factors mentioned in the literature, poten-tial causes of GDM are gestational age, history of gestational diabetes, family history of diabetes, body mass index, abortions and parity, and history of macrosomia.Conclusion: Considering the high prevalence of postpartum diabetes and its related factors in Iran, strategic planning for disease prevention and reduction is inevitable.

  17. Analysis on the Physicochemical Properties of Ginkgo biloba Leaves after Enzymolysis Based Ultrasound Extraction and Soxhlet Extraction.

    Science.gov (United States)

    Zhang, Chang-Wei; Wang, Cheng-Zhang; Tao, Ran

    2016-01-15

    In this study, high performance liquid chromatography (HPLC), ultraviolet (UV), thermagravimetric analyzer (TGA), pyrolysis-gas chromatography-mass spectrometry (Py-GC-MS), and scanning electron microscope (SEM) were used as measurement techniques, contents of chemical composition, pyrolytic products, thermal stability, morphological characterization of Ginkgo biloba leaves (GBL) acted as the index, and physicochemical properties of GBL after enzymolysis based ultrasound extraction (EBUE) and Soxhlet extraction were studied. The detection results of chemical composition revealed that contents of general flavone, soluble protein, soluble total sugar and protein in the GBL declined significantly after EBUE, and contents of polyprenols and crude fat obviously reduced as well after Soxhlet extraction. Py-GC-MS results indicated that total GC contents of micromolecules with carbon less than 12 from 54.0% before EBUE decline to 8.34% after EBUE. Total GC contents of long-chain fatty acids with carbon less than 20 from 43.0% before EBUE reduced to 27.0% after Soxhlet extraction. Thermal stability results showed that GBL after Soxhlet extraction was easier to decompose than GBL before EBUE. SEM results illustrated that surface structure of GBL was damaged severely after EBUE, compared with GBL before EBUE, while organic solvent extraction had little influence on the morphological characterization of GBL after Soxhlet extraction compared with GBL after EBUE.

  18. Analysis on the Physicochemical Properties of Ginkgo biloba Leaves after Enzymolysis Based Ultrasound Extraction and Soxhlet Extraction

    Directory of Open Access Journals (Sweden)

    Chang-Wei Zhang

    2016-01-01

    Full Text Available In this study, high performance liquid chromatography (HPLC, ultraviolet (UV, thermagravimetric analyzer (TGA, pyrolysis-gas chromatography-mass spectrometry (Py-GC-MS, and scanning electron microscope (SEM were used as measurement techniques, contents of chemical composition, pyrolytic products, thermal stability, morphological characterization of Ginkgo biloba leaves (GBL acted as the index, and physicochemical properties of GBL after enzymolysis based ultrasound extraction (EBUE and Soxhlet extraction were studied. The detection results of chemical composition revealed that contents of general flavone, soluble protein, soluble total sugar and protein in the GBL declined significantly after EBUE, and contents of polyprenols and crude fat obviously reduced as well after Soxhlet extraction. Py-GC-MS results indicated that total GC contents of micromolecules with carbon less than 12 from 54.0% before EBUE decline to 8.34% after EBUE. Total GC contents of long-chain fatty acids with carbon less than 20 from 43.0% before EBUE reduced to 27.0% after Soxhlet extraction. Thermal stability results showed that GBL after Soxhlet extraction was easier to decompose than GBL before EBUE. SEM results illustrated that surface structure of GBL was damaged severely after EBUE, compared with GBL before EBUE, while organic solvent extraction had little influence on the morphological characterization of GBL after Soxhlet extraction compared with GBL after EBUE.

  19. The Pain Behaviour Checklist: factor analysis and validation.

    Science.gov (United States)

    Anciano, D

    1986-11-01

    A factor analysis was performed on Philips & Hunter's (1981) Pain Behaviour Checklist for headache sufferers. Three intuitively meaningful factors emerged. All were similarly associated with overall intensity; pain severity does not determine type of pain behaviour. Differences in pain behaviour emerged between migraine and tension headache groups.

  20. Determining Dimensionality of Exercise Readiness Using Exploratory Factor Analysis

    Directory of Open Access Journals (Sweden)

    Kelley Strohacker, Rebecca A. Zakrajsek

    2016-06-01

    Full Text Available Assessment of “exercise readiness” is a central component to the flexible non-linear periodization (FNLP method of organizing training workloads, but the underlying factor structure of this construct has not been empirically determined. The purpose of this study was to assess construct dimensionality of exercise readiness using exploratory factor analysis. The result of which serve as initial steps of developing a brief measure of exercise readiness. Participants consisted of students recruited from undergraduate Kinesiology courses at a racially diverse, southern University. Independent, anonymous online survey data were collected across three stages: 1 generation of item pool (n = 290, 2 assessment of face validity and refinement of item pool (n = 168, and 3 exploratory factor analysis (n = 684. A principal axis factor analysis was conducted with 41 items using oblique rotation (promax. Four statistically significant factors, as determined through parallel analysis, explained 61.5% of the variance in exercise readiness. Factor 1 contained items that represented vitality (e.g., lively, revived. Factor 2 items related to physical fatigue (e.g. tired, drained. Factors 3 and 4 were descriptive of, discomfort (e.g. pain, sick and health (i.e. healthy, fit, respectively. This inductive approach indicates that exercise readiness is comprised of four dimensions: vitality, physical fatigue, discomfort, and health. This finding supports readiness assessment techniques currently recommended for practitioners according to the FNLP model. These results serve as a theoretical foundation upon which to further develop and refine a brief survey instrument to measure exercise readiness.

  1. 48 CFR 2115.404-71 - Profit analysis factors.

    Science.gov (United States)

    2010-10-01

    ... account in assigning a plus weight. (5) Cost control. This factor is based on the Contractor's previously... TYPES CONTRACTING BY NEGOTIATION Contract Pricing 2115.404-71 Profit analysis factors. (a) The OPM... receive a plus weight, and poor performance or failure to comply with contract terms and conditions a zero...

  2. Analysis on Family Factor in Construction of New Socialist Countryside

    Institute of Scientific and Technical Information of China (English)

    2012-01-01

    This paper analyzes the family factor in the construction of new socialist countryside. It is believed that the family plays both the positive role and negative role in new socialist countryside construction. Based on this analysis,it puts forward corresponding countermeasures,including bringing into play the effect of family in promoting production and carrying forward excellent factors of family culture.

  3. Exploratory Tobit factor analysis for multivariate censored data

    NARCIS (Netherlands)

    Kamakura, WA; Wedel, M

    2001-01-01

    We propose Multivariate Tobit models with a factor structure on the covariance matrix. Such models are particularly useful in the exploratory analysis of multivariate censored data and the identification of latent variables from behavioral data. The factor structure provides a parsimonious

  4. Connectivism in Postsecondary Online Courses: An Exploratory Factor Analysis

    Science.gov (United States)

    Hogg, Nanette; Lomicky, Carol S.

    2012-01-01

    This study explores 465 postsecondary students' experiences in online classes through the lens of connectivism. Downes' 4 properties of connectivism (diversity, autonomy, interactivity, and openness) were used as the study design. An exploratory factor analysis was performed. This study found a 4-factor solution. Subjects indicated that autonomy…

  5. Regularized generalized eigen-decomposition with applications to sparse supervised feature extraction and sparse discriminant analysis

    DEFF Research Database (Denmark)

    Han, Xixuan; Clemmensen, Line Katrine Harder

    2015-01-01

    techniques, for instance, 2D-Linear Discriminant Analysis (2D-LDA). Furthermore, an iterative algorithm based on the alternating direction method of multipliers is developed. The algorithm approximately solves RGED with monotonically decreasing convergence and at an acceptable speed for results of modest......We propose a general technique for obtaining sparse solutions to generalized eigenvalue problems, and call it Regularized Generalized Eigen-Decomposition (RGED). For decades, Fisher's discriminant criterion has been applied in supervised feature extraction and discriminant analysis...... accuracy. Numerical experiments based on four data sets of different types of images show that RGED has competitive classification performance with existing multidimensional and sparse techniques of discriminant analysis....

  6. Confirmatory Factor Analysis of the Career Factors Inventory on a Community College Sample

    Science.gov (United States)

    Simon, Merril A.; Tovar, Esau

    2004-01-01

    A confirmatory factor analysis was conducted using AMOS 4.0 to validate the 21-item Career Factors Inventory on a community college student sample. The multidimensional inventory assesses types and levels of career indecision antecedents. The sample consisted of 512 ethnically diverse freshmen students; 46% were men and 54% were women.…

  7. Comparison of DNA Extraction Methods for Microbial Community Analysis in Indonesian Tempe Employing Amplified Ribosomal Intergenic Spacer Analysis

    Directory of Open Access Journals (Sweden)

    CECILIA ANNA SEUMAHU

    2012-06-01

    Full Text Available Tempe fermentation involved complex microbial communities which are only revealed partially through culture dependent methods. Culture-independent methods would be potential to unravel this complex microbial fermentation. Appropriate DNA extraction is an essential tool to obtain reliable data from culture independent method. In this study, we employed two commercial DNA extraction methods to find the best one for microbial community characterization employing amplified ribosomal intergenic spacer analysis (ARISA. Our result showed that PowerFood Microbial DNA Isolation Kit-MOBIO (PFMDIK is an excellent method for microbial DNA extraction from tempe. It gave high quantity and quality of DNA suitable for PCR amplification of 16S-23S rRNA intergenic spacer to yield a diverse and reproducible ARISA profile.

  8. Extraction of the beta-factor for single quantum dots coupled to a photonic crystal waveguide

    DEFF Research Database (Denmark)

    Nielsen, Henri Thyrrestrup; Sapienza, Luca; Lodahl, Peter

    2010-01-01

    We present measurements of the β-factor, describing the coupling efficiency of light emitted by single InAs/GaAs semiconductor quantum dots into a photonic crystal waveguide mode. The β-factor is evaluated by means of time resolved frequency-dependent photoluminescence spectroscopy. The emission...

  9. Evaluation of extraction procedures for 2-DE analysis of aphid proteins.

    Science.gov (United States)

    Yiou, Pan; Shaoli, An; Kebin, Li; Tao, Wang; Kui, Fang; Hua, Zhang; Yu, Sun; Xun, Yang; Jinghui, Xi

    2013-02-01

    Protein sample preparation is a crucial step in a 2-DE proteomics approach. In order to establish a routine protocol for the application of proteomics analysis to aphids, this study focuses on the specific protein extraction problems in insect tissues and evaluates four methods to bypass them. The approaches of phenol extraction methanol/ammonium acetate precipitation (PA), TCA/acetone precipitation, PEG precipitation, and no precipitation were evaluated for proteins isolation and purification from apterous adult aphids, Sitobion avenae. For 2-DE, the PA protocol was optimal, resulting in good IEF and clear spots. PA method yielded the greatest amount of protein and displayed most protein spots in 2-DE gels, as compared with the TCA/acetone precipitation, PEG precipitation and no precipitation protocols. Analysis of protein yield, image quality and spot numbers demonstrate that the TCA/acetone precipitation protocol is a reproducible and reliable method for extracting proteins from aphids. The PEG precipitation approach is a newly developed protein extraction protocol for aphids, from which more unique protein spots can be detected, especially for detection of acid proteins. These protocols are expected to be applicable to other insects or could be of interest to laboratories involved in insect proteomics, despite the amounts and types of interfering compounds vary considerably in different insects.

  10. Antimicrobial Activity and Chromatographic Analysis of Extracts from Tropaeolum pentaphyllum Lam. Tubers

    Directory of Open Access Journals (Sweden)

    Ritiel Corrêa da Cruz

    2016-04-01

    Full Text Available Background: Tropaeolum pentaphyllum Lam. tubers (Tropaeolaceae are known and used as a condiment and for the treatment of skin infections in Southern Brazil. However, its activity and composition has not yet been investigated. Thus, different extracts and the essential oil from the tubers were tested against a range of microorganisms. The most active extracts were submitted to chromatographic analysis. Methods: Hydroalcoholic extract (70%, fractions of it, and the essential oil from the tubers were tested against several bacteria, yeasts and molds, furnishing the corresponding inhibitory, bactericidal and fungicidal minimal concentration values. The most active extracts were submitted to GC-MS investigation. Results: The strongest effects against different strains of microorganisms, such as Gram-positive and negative bacteria, Candida spp. and dermatophytes were observed for the essential oil and the chloroform fraction, with minimal inhibitory concentrations (MICs well below 200 µg/mL. GC-MS analysis revealed that the major essential oil constituent is benzyl isothiocyanate (BITC, while the chloroform fraction is constituted of BITC, amides, sulfur, fatty acids and its esters, all compounds that may be related to the demonstrated activity. Conclusions: Overall, the results support the popular use of the plant for the treatment of skin infections, and revealed the main active compounds.

  11. Text Region Extraction: A Morphological Based Image Analysis Using Genetic Algorithm

    Directory of Open Access Journals (Sweden)

    Dhirendra Pal Singh

    2015-01-01

    Full Text Available Image analysis belongs to the area of computer vision and pattern recognition. These areas are also a part of digital image processing, where researchers have a great attention in the area of content retrieval information from various types of images having complex background, low contrast background or multi-spectral background etc. These contents may be found in any form like texture data, shape, and objects. Text Region Extraction as a content from an mage is a class of problems in Digital Image Processing Applications that aims to provides necessary information which are widely used in many fields medical imaging, pattern recognition, Robotics, Artificial intelligent Transport systems etc. To extract the text data information has becomes a challenging task. Since, Text extraction are very useful for identifying and analysis the whole information about image, Therefore, In this paper, we propose a unified framework by combining morphological operations and Genetic Algorithms for extracting and analyzing the text data region which may be embedded in an image by means of variety of texts: font, size, skew angle, distortion by slant and tilt, shape of the object which texts are on, etc. We have established our proposed methods on gray level image sets and make qualitative and quantitative comparisons with other existing methods and concluded that proposed method is better than others.

  12. Comparative Proteomic Analysis of Cotton Fiber Development and Protein Extraction Method Comparison in Late Stage Fibers

    Directory of Open Access Journals (Sweden)

    Hana Mujahid

    2016-02-01

    Full Text Available The distinct stages of cotton fiber development and maturation serve as a single-celled model for studying the molecular mechanisms of plant cell elongation, cell wall development and cellulose biosynthesis. However, this model system of plant cell development is compromised for proteomic studies due to a lack of an efficient protein extraction method during the later stages of fiber development, because of a recalcitrant cell wall and the presence of abundant phenolic compounds. Here, we compared the quality and quantities of proteins extracted from 25 dpa (days post anthesis fiber with multiple protein extraction methods and present a comprehensive quantitative proteomic study of fiber development from 10 dpa to 25 dpa. Comparative analysis using a label-free quantification method revealed 287 differentially-expressed proteins in the 10 dpa to 25 dpa fiber developmental period. Proteins involved in cell wall metabolism and regulation, cytoskeleton development and carbohydrate metabolism among other functional categories in four fiber developmental stages were identified. Our studies provide protocols for protein extraction from maturing fiber tissues for mass spectrometry analysis and expand knowledge of the proteomic profile of cotton fiber development.

  13. Comprehensive analysis of drugs of abuse in urine using disposable pipette extraction.

    Science.gov (United States)

    Ellison, Sparkle T; Brewer, William E; Morgan, Stephen L

    2009-09-01

    The extraction of basic, acidic, and neutral drugs of abuse from a low volume of urine (0.2 mL) using disposable pipette extraction (DPX) is described. DPX is a solid-phase extraction device that uses loosely contained sorbent inside a pipette tip fitted with a screen. This device provides faster extraction times because conditioning steps are not required. In this study, the DPX used a modified divinyl benzene sorbent containing both cation-exchange and reversed-phase mechanisms that facilitates the retention of basic and acidic/neutral drugs, respectively. With this device, a comprehensive method of analysis was developed for a diverse group of drugs and drug classes in urine including amphetamines, opiates, cocaine and its metabolites, tetrahydrocannabinol metabolite, tricyclic antidepressants, meperidine, methadone, and phencyclidine. Recoveries of the majority of drugs analyzed were 90% or greater with relative standard deviations of less than 10%. Additional validation involved the analysis of urine specimens previously analyzed by a local forensic toxicology laboratory.

  14. [Extraction and analysis of nuclear DNA from free margin of nail material].

    Science.gov (United States)

    Nie, Sheng-Jie; Yang, Yan-Mei; Tang, Wen-Ru; Xu, Bing-Ying; Jing, Qiang; Xiao, Chun-Jie

    2007-11-01

    To investigate the feasibility of DNA analysis from free margin of the nail, genomic DNA was extracted from the free margin of nail clipping of 10 volunteers using the proteinase K/SDS -based organic method, the Chelex-100 method, or a combined method. Target DNA was simultaneously amplified using a fluorescent multiplex AmpFlSTR Identifier kit. The PCR products were analyzed on the ABI PRISM 3130 Genetic Analyzer. The results showed that, compared with profiles achieved by genotyping of blood samples from each volunteer as reference, 100% concordance was achieved using the combined method. The STR genotype profiles obtained through the organic method were acceptable, despite preferential amplification at some loci. In contrast, no readable profiles could be determined when DNA was extracted by the Chelex-100 method, and there were a large number of alleles missing. Our data suggest that free margin of nail can be used for nuclear DNA analysis, but the type of DNA isolation method used is critical. The traditional organic extraction method works reasonably well for free margin nail DNA isolation, and combination of organic extraction and the Chelex-100 method works best.

  15. Quantitative analysis of perfumes in talcum powder by using headspace sorptive extraction.

    Science.gov (United States)

    Ng, Khim Hui; Heng, Audrey; Osborne, Murray

    2012-03-01

    Quantitative analysis of perfume dosage in talcum powder has been a challenge due to interference of the matrix and has so far not been widely reported. In this study, headspace sorptive extraction (HSSE) was validated as a solventless sample preparation method for the extraction and enrichment of perfume raw materials from talcum powder. Sample enrichment is performed on a thick film of poly(dimethylsiloxane) (PDMS) coated onto a magnetic stir bar incorporated in a glass jacket. Sampling is done by placing the PDMS stir bar in the headspace vial by using a holder. The stir bar is then thermally desorbed online with capillary gas chromatography-mass spectrometry. The HSSE method is based on the same principles as headspace solid-phase microextraction (HS-SPME). Nevertheless, a relatively larger amount of extracting phase is coated on the stir bar as compared to SPME. Sample amount and extraction time were optimized in this study. The method has shown good repeatability (with relative standard deviation no higher than 12.5%) and excellent linearity with correlation coefficients above 0.99 for all analytes. The method was also successfully applied in the quantitative analysis of talcum powder spiked with perfume at different dosages. © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  16. An improved high-throughput lipid extraction method for the analysis of human brain lipids.

    Science.gov (United States)

    Abbott, Sarah K; Jenner, Andrew M; Mitchell, Todd W; Brown, Simon H J; Halliday, Glenda M; Garner, Brett

    2013-03-01

    We have developed a protocol suitable for high-throughput lipidomic analysis of human brain samples. The traditional Folch extraction (using chloroform and glass-glass homogenization) was compared to a high-throughput method combining methyl-tert-butyl ether (MTBE) extraction with mechanical homogenization utilizing ceramic beads. This high-throughput method significantly reduced sample handling time and increased efficiency compared to glass-glass homogenizing. Furthermore, replacing chloroform with MTBE is safer (less carcinogenic/toxic), with lipids dissolving in the upper phase, allowing for easier pipetting and the potential for automation (i.e., robotics). Both methods were applied to the analysis of human occipital cortex. Lipid species (including ceramides, sphingomyelins, choline glycerophospholipids, ethanolamine glycerophospholipids and phosphatidylserines) were analyzed via electrospray ionization mass spectrometry and sterol species were analyzed using gas chromatography mass spectrometry. No differences in lipid species composition were evident when the lipid extraction protocols were compared, indicating that MTBE extraction with mechanical bead homogenization provides an improved method for the lipidomic profiling of human brain tissue.

  17. Analysis of Flavonoid in Medicinal Plant Extract Using Infrared Spectroscopy and Chemometrics

    Directory of Open Access Journals (Sweden)

    Lestyo Wulandari

    2016-01-01

    Full Text Available Infrared (IR spectroscopy combined with chemometrics has been developed for simple analysis of flavonoid in the medicinal plant extract. Flavonoid was extracted from medicinal plant leaves by ultrasonication and maceration. IR spectra of selected medicinal plant extract were correlated with flavonoid content using chemometrics. The chemometric method used for calibration analysis was Partial Last Square (PLS and the methods used for classification analysis were Linear Discriminant Analysis (LDA, Soft Independent Modelling of Class Analogies (SIMCA, and Support Vector Machines (SVM. In this study, the calibration of NIR model that showed best calibration with R2 and RMSEC value was 0.9916499 and 2.1521897, respectively, while the accuracy of all classification models (LDA, SIMCA, and SVM was 100%. R2 and RMSEC of calibration of FTIR model were 0.8653689 and 8.8958149, respectively, while the accuracy of LDA, SIMCA, and SVM was 86.0%, 91.2%, and 77.3%, respectively. PLS and LDA of NIR models were further used to predict unknown flavonoid content in commercial samples. Using these models, the significance of flavonoid content that has been measured by NIR and UV-Vis spectrophotometry was evaluated with paired samples t-test. The flavonoid content that has been measured with both methods gave no significant difference.

  18. Factor analysis on symptoms and signs of stroke based on traditional Korean Medicine theory.

    Science.gov (United States)

    Kang, Byoung-Kab; Park, Tae-Yong; Lee, Ju Ah; Moon, Tae-Woong; Lee, Myeong-Soo

    2015-01-01

    The purpose of this study was to classify factors of symptoms and signs, which is the same implication with items of factor, from patients with stroke based on the Traditional Korean Medicine (TKM) theory by using factor analysis, and to find out the inter-relations between factors and patterns. A cross-sectional study was conducted among 2905 patients with stroke in 11 Oriental Medicine hospitals of Korea. Outcome measures comprised patterns decided by TKM doctors considering 44 items and 44 items that were based on inspection, listening and smelling, inquiry, and palpation. Factor analysis was used as statistical method for classifying 44 items, and dominant pattern of the four patterns [Qi deficiency (QD), Fire-heat (FH), Yin deficiency (YD), Dampness-phlegm (DP)] for each factor was determined by Chi-square test. Thirty-three items belonged to some factors, but 11 items did not. 14 factors were extracted. Six factors which had a negative loading were separated, and distinguished using hyphen. The fourteen factors accounted for 9.42%, 6.97%, 5.75%, 4.22%, 4.15%, 3.82%, 3.32%, 3.14%, 2.95%, 2.65%, 2.62%, 2.47%, 2.37% and 2.29% of total variance respectively, and totally 56.14%. In conclusion, there are 10 factors which belong to exclusive pattern, and 9 factors which belong to inter-related pattern. It was statistically found out that there are inter-relation between DP and QD, between DP and FH, between FH and YD, and between YD and QD for stroke patients.

  19. Common experiences of pain in children and adolescents--an exploratory factor analysis of a questionnaire.

    Science.gov (United States)

    Krekmanova, Larisa; Hakeberg, Magnus; Robertson, Agneta; Klingberg, Gunilla

    2013-01-01

    The aim of the study was to reduce everyday and dental treatment pain items included in the extended Children's Pain Inventory (CPI), used in a prior study on Swedish children and adolescents. Another aim was to, by means of exploratory factor analysis (EFA), expose hitherto undiscovered dimensions of the CPI pain variables and thus to improve the psychometric properties of CPI. As some pain items are relevant merely to some individuals, a new and more useful questionnaire construction would enhance the internal validity of the instrument in observational surveys. EFA was applied on the extended CPI instrument. 368 children, 8-19 years old, had answered a questionnaire comprising 10 dental and 28 everyday pain variables. These pain items were analysed using a series of sequentially implemented EFA. Interpretations and decisions on the final number of the extracted factors was based on accepted principles; Kaiser's Eigenvalue >1 criterion, inspection of the scree plot and the interpretability of the items loading. The factors were orthogonally rotated using the Varimax method to maximize the amount of variance. Of all tested EFA models in the analysis, a two, three, four, and five factor model surfaced. The interpretability of the factors and their items loading were stepwise examined; the items were modulated and the factors re-evaluated. A four factor pain model emerged as the most interpretable, explaining 79% of the total variance depicting Eigenvalues > 1.014. The factors were named indicating the profile of the content: Factor I cutting trauma to skin/mucosal pain, Factor II head/neck pain, Factor III tenderness/blunt trauma pain, Factor IV oral/dental treatment pain.

  20. Wheatgrass extract inhibits hypoxia-inducible factor-1-mediated epithelial-mesenchymal transition in A549 cells

    Science.gov (United States)

    Do, Nam Yong; Shin, Hyun-Jae

    2017-01-01

    BACKGROUND/OBJECTIVES Epithelial-mesenchymal transition (EMT) is involved in not only cancer development and metastasis but also non-cancerous conditions. Hypoxia is one of the proposed critical factors contributing to formation of chronic rhinosinusitis or nasal polyposis. Wheatgrass (Triticum aestivum) has antioxidant, anti-aging, and anti-inflammatory effects. In this study, we analyzed whether wheatgrass has an inhibitory effect on the EMT process in airway epithelial cells. MATERIALS/METHODS A549 human lung adenocarcinoma cells were incubated in hypoxic conditions (CO2 5%/O2 1%) for 24 h in the presence of different concentrations of wheatgrass extract (50, 75, 100, and 150 µg/mL) and changes in expression of epithelial or mesenchymal markers were evaluated by immunoblotting and immunofluorescence. Accordingly, associated EMT-related transcriptional factors, Snail and Smad, were also evaluated. RESULTS Hypoxia increased expression of N-cadherin and reduced expression of E-cadherin. Mechanistically, E-cadherin levels were recovered during hypoxia by silencing hypoxia inducible factor (HIF)-1α or administering wheatgrass extract. Wheatgrass inhibited the hypoxia-mediated EMT by reducing the expression of phosphorylated Smad3 (pSmad3) and Snail. It suppressed the hypoxia-mediated EMT processes of airway epithelial cells via HIF-1α and the pSmad3 signaling pathway. CONCLUSION These results suggest that wheatgrass has potential as a therapeutic or supplementary agent for HIF-1-related diseases.