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Sample records for express marsis sounder

  1. Mars Express/MARSIS - Analysis and solution of an anomaly event: MARSIS Data Bad Time Stamp

    Science.gov (United States)

    Giuppi, S.; Cartacci, M.; Cicchetti, A.; Noschese, R.; Orosei, R.

    2011-10-01

    This paper describes the detection, the analysis and the possible solutions of an anomaly event occurred sometimes in MARSIS science data consisting in the corruption of the Spacecraft Event Time (SCET): MARSIS Data Bad Time Stamp.

  2. The Digital Electronic Subsystem of Marsis

    Science.gov (United States)

    Maltecca, L.; Pecora, M.; Scandelli, L.

    MARSIS (Mars Advanced Radar for Subsurface and Ionospheric Sounding) is one of the Instrument of the ESA Mars Express mission, to be launched in June 2003 with a Soyuz/Fregate. Its primary objective is to map the distribution of water, both liquid and solid, in the upper portions of the crust of Mars. Secondary objectives are subsurface geologic probing, surface characterisation and ionosphere sounding. The MARSIS instrument is a low-frequency nadir-looking pulse limited radar sounder and altimeter with ground penetration capabilities, which uses synthetic aperture techniques and a secondary-receiving antenna to isolate subsurface reflections. Functionally and also from the responsibility point of view of each organisation involved in MARSIS, the instrument can be split into three subsystems: - Antenna: ANT - Radio Frequency Subsystem: RFS (TX+RX) - Digital Electronics Subsystem: DES MARSIS is an international co-operation between Italian Space Agency (ASI) and National Aeronautics and Space Administration (NASA). The experiment has an Italian Principal investigator (from Infocom Dept. of University of Rome "La Sapienza"), an U.S. Co-PI (from Jet Propulsion Laboratory), and Co-I~@~Ys from Italy, the U.S. and other countries. Italy is the lead for the experiment definition with the participation of the U.S.. In particular Alenia Spazio/Rome is the Prime Contractor of the industrial team and also supplier of part of the RF subsystem. Laben (a company of Finmeccanica) is the supplier of the Digital Electronic Subsystem (DES), including its basic and application SW, as subcontractor of ALS. The purpose of this paper is to describe the DES from HW and SW point of view, including the Test Equipment and the special simulator developed used for DES validation.

  3. Observations of Phobos by the Mars Express radar MARSIS: Description of the detection techniques and preliminary results

    Science.gov (United States)

    Cicchetti, A.; Nenna, C.; Plaut, J. J.; Plettemeier, D.; Noschese, R.; Cartacci, M.; Orosei, R.

    2017-11-01

    The Mars Advanced Radar for Subsurface and Ionosphere Sounding (MARSIS) (Picardi et al., 2005) is a synthetic aperture low frequency radar altimeter, onboard the ESA Mars Express orbiter, launched in June 2003. It is the first and so far the only spaceborne radar that has observed the Martian moon Phobos. Radar echoes were collected on different flyby trajectories. The primary aim of sounding Phobos is to prove the feasibility of deep sounding, into its subsurface. MARSIS is optimized for deep penetration investigations and is capable of transmitting at four different bands between 1.3 MHz and 5.5 MHz with a 1 MHz bandwidth. Unfortunately the instrument was originally designed to operate exclusively on Mars, assuming that Phobos would not be observed. Following this assumption, a protection mechanism was implemented in the hardware (HW) to maintain a minimum time separation between transmission and reception phases of the radar. This limitation does not have any impact on Mars observation but it prevented the observation of Phobos. In order to successfully operate the instrument at Phobos, a particular configuration of the MARSIS onboard software (SW) parameters, called ;Range Ambiguity,; was implemented to override the HW protection zone, ensuring at the same time a high level of safety of the instrument. This paper describes the principles of MARSIS onboard processing, and the procedure through which the parameters of the processing software were tuned to observe targets below the minimum distance allowed by hardware. Some preliminary results of data analysis will be shown, with the support of radar echo simulations. A qualitative comparison between the simulated results and the actual data, does not support the detection of subsurface reflectors.

  4. MARSIS Data Bad Time Stamp: Analysis and Solution of an Anomaly Event in a Space Mission

    Science.gov (United States)

    Giuppi, S.; Cartacci, M.; Cicchetti, A.; Frigeri, A.; Noschese, R.; Orosei, R.

    2012-04-01

    Mars Express is Europe's first spacecraft to the Red Planet. The spacecraft has been orbiting Mars since December 2003, carrying a suite of instruments that are investigating many scientific aspects of this planet in unprecedented detail. The observations are particularly focused on martian atmosphere, surface and subsurface. The most innovative instrument on board of Mars Express is MARSIS, a subsurface radar sounder with a 40-meter antenna. The main objective of MARSIS is to look for water from the martian surface down to about 5 kilometers below the surface. It provides the first opportunity to detect liquid water directly. It is also able to characterize the surface elevation, roughness, and radar reflectivity of the planet and to study the interaction of the atmosphere and solar wind in the red planet's ionosphere. MARSIS Data are stored on the on-board memory and periodically sent to Earth ground stations. Spacecraft Event Time (SCET) is the time an event occurs in relation to a spacecraft as measured by the spacecraft clock. Since it takes time for a radio transmission to reach the spacecraft from the earth, the usual operation of a spacecraft is done via an uploaded commanding script containing SCET markers to ensure a certain timeline of events. Occasionally the generation time (SCET) of the MARSIS science packets recorded during an observation gets corrupted. This means that while some of the data have the correct SCET, some other data have a SCET not compliant with the effective generation time. For this reason with the standard procedure it is possible to retrieve only partial data. In this paper we describe the cause of the anomaly occurrence and the procedures to be applied depending on the circumstances that arise. The application of these procedures is been successful and allowed to circumvent the problem.

  5. Simulation of Radar-Backscattering from Phobos - A Contribution to the Experiment MARSIS aboard MarsExpress

    Science.gov (United States)

    Plettemeier, D.; Hahnel, R.; Hegler, S.; Safaeinili, A.; Orosei, R.; Cicchetti, A.; Plaut, J.; Picardi, G.

    2009-04-01

    MARSIS (Mars Advanced Radar for Subsurface and Ionosphere Sounding) on board MarsExpress is the first and so far the only space borne radar that observed the Martian moon Phobos. Radar echoes were measured for different flyby trajectories. The primary aim of the low frequency sounding of Phobos is to prove the feasibility of deep sounding, into the crust of Phobos. In this poster we present a numerical method that allows a very precise computation of radar echoes backscattered from the surface of large objects. The software is based on a combination of physical optics calculation of surface scattering of the radar target, and Method of Moments to calculate the radiation pattern of the whole space borne radar system. The calculation of the frequency dependent radiation pattern takes into account all relevant gain variations and coupling effects aboard the space craft. Based on very precise digital elevation models of Phobos, patch models in the resolution of lambda/10 were generated. Simulation techniques will be explained and a comparison of simulations and measurements will be shown. SURFACE BACKSCATTERING SIMULATOR FOR LARGE OBJECTS The computation of surface scattering of the electromagnetic wave incident on Phobos is based on the Physical Optics method. The scattered field can be expressed by the induced equivalent surface currents on the target. The Algorithm: The simulation program itself is split into three phases. In the first phase, an illumination test checks whether a patch will be visible from the position of the space craft. If this is not the case, the patch will be excluded from the simulation. The second phase serves as a preparation stage for the third phase. Amongst other tasks, the dyadic products for the Js and Ms surface currents are calculated. This is a time-memory trade-off: the simulation will need additional 144 bytes of RAM for every patch that passes phase one. However, the calculation of the dyads is expensive, so that considerable

  6. Vaadeldes rändavaid Marsi pilvi

    Index Scriptorium Estoniae

    2008-01-01

    Prantsuse teadlane Franck Montmessin Versailles' ülikoolist uuris Euroopa kosmoseagentuuri ESA satelliidi Mars Express kogutud andmeid ning jõudis järeldusele, et Marsi pilved on piisavalt tihedad, suutmaks heita planeedi pinnale varje ning mõjutada pinna temperatuuri

  7. Mars subsurface investigation by MARSIS and SHARAD

    Science.gov (United States)

    Picardi, Giovanni; Loukas, Alessandro; Masdea, Arturo; Mastrogiuseppe, Marco; Restano, Marco; Seu, Roberto

    2010-05-01

    This paper is addressed to MARSIS (Mars Advanced Radar for Subsurface and Ionosphere Sounding in Mars Express ESA mission) data inversion. The data inversion gives an estimation of the materials composing the different detected interfaces, including the impurity (inclusion) of the first layer, if any, and its percentage, by the evaluation of the values of the permittivity that would generate the observed radio echoes. The methodology utilized for the data inversion is applied in different areas of the Mars South Pole and the results are reported for each area. The scattering behavior of the surface and subsurface (flat or rough), according with the geometrical structure, is estimated by the shape of the radar echoes and is utilized for the correction of their power; in such a way the contributions due to the surface and subsurface shape are estimated and the corrected echoes contain only the surface and subsurface material features. In this paper, in order to define the main topics of the data inversion, are only considered areas where flat surfaces are present and clutter echoes are negligible; the clutter cancellation can be applied according with the well known techniques. The scattering (volume scattering) due to the inclusion in the host material has been considered. Several frames, from SHARAD (SHAllow RADar in Mars Reconnaissance Orbiter US mission), in the same Mars area, have been analyzed and they confirmed the layer attenuation obtained by MARSIS data. Within the MARSIS papers this one presents a quantitative and scientific parametric data inversion, based on a physical approach and gives numerical results on the dielectric constant of the detected interface.

  8. La lunga attesa di Marsis

    Directory of Open Access Journals (Sweden)

    Fabrizio Bernardini

    2005-10-01

    Full Text Available Abbiamo parlato in altre occasioni di MARSIS e della sua progenie SHARAD, due esperimenti italiani per la misura di caratteristiche sottosuperficiali del pianeta Marte. Prodotti innovativi ed unici che nascondono un potenziale scientifico elevato. La strada per Marte però non è così facile come può sembrare e se la realizzazione degli strumenti non è stata esente da dolori, l’interpretazione e la divulgazione dei risultati non sono da meno. Le incertezze ed i dubbi sono però ora dissipati: l’esperimento MARSIS funziona perfettamente e per la prima volta nella storia dell’umanità abbiamo uno strumento e gli elementi per capire cosa c’è nel sottosuolo di un altro pianeta, senza aver inviato sul posto geologi ne’ tantomeno squadre per movimenti di terra.

  9. Ionospheric Irregularities at Mars Probed by MARSIS Topside Sounding

    Science.gov (United States)

    Harada, Y.; Gurnett, D. A.; Kopf, A. J.; Halekas, J. S.; Ruhunusiri, S.

    2018-01-01

    The upper ionosphere of Mars contains a variety of perturbations driven by solar wind forcing from above and upward propagating atmospheric waves from below. Here we explore the global distribution and variability of ionospheric irregularities around the exobase at Mars by analyzing topside sounding data from the Mars Advanced Radar for Subsurface and Ionosphere Sounding (MARSIS) instrument on board Mars Express. As irregular structure gives rise to off-vertical echoes with excess propagation time, the diffuseness of ionospheric echo traces can be used as a diagnostic tool for perturbed reflection surfaces. The observed properties of diffuse echoes above unmagnetized regions suggest that ionospheric irregularities with horizontal wavelengths of tens to hundreds of kilometers are particularly enhanced in the winter hemisphere and at high solar zenith angles. Given the known inverse dependence of neutral gravity wave amplitudes on the background atmospheric temperature, the ionospheric irregularities probed by MARSIS are most likely associated with plasma perturbations driven by atmospheric gravity waves. Though extreme events with unusually diffuse echoes are more frequently observed for high solar wind dynamic pressures during some time intervals, the vast majority of the diffuse echo events are unaffected by varying solar wind conditions, implying limited influence of solar wind forcing on the generation of ionospheric irregularities. Combination of remote and in situ measurements of ionospheric irregularities would offer the opportunity for a better understanding of the ionospheric dynamics at Mars.

  10. Mars radar clutter and surface roughness characteristics from MARSIS data

    Science.gov (United States)

    Campbell, Bruce A.; Schroeder, Dustin M.; Whitten, Jennifer L.

    2018-01-01

    Radar sounder studies of icy, sedimentary, and volcanic settings can be affected by reflections from surface topography surrounding the sensor nadir location. These off-nadir ;clutter; returns appear at similar time delays to subsurface echoes and complicate geologic interpretation. Additionally, broadening of the radar echo in delay by surface returns sets a limit on the detectability of subsurface interfaces. We use MARSIS 4 MHz data to study variations in the nadir and off-nadir clutter echoes, from about 300 km to 1000 km altitude, R, for a wide range of surface roughness. This analysis uses a new method of characterizing ionospheric attenuation to merge observations over a range of solar zenith angle and date. Mirror-like reflections should scale as R-2, but the observed 4 MHz nadir echoes often decline by a somewhat smaller power-law factor because MARSIS on-board processing increases the number of summed pulses with altitude. Prior predictions of the contributions from clutter suggest a steeper decline with R than the nadir echoes, but in very rough areas the ratio of off-nadir returns to nadir echoes shows instead an increase of about R1/2 with altitude. This is likely due in part to an increase in backscatter from the surface as the radar incidence angle at some round-trip time delay declines with increasing R. It is possible that nadir and clutter echo properties in other planetary sounding observations, including RIME and REASON flyby data for Europa, will vary in the same way with altitude, but there may be differences in the nature and scale of target roughness (e.g., icy versus rocky surfaces). We present global maps of the ionosphere- and altitude-corrected nadir echo strength, and of a ;clutter; parameter based on the ratio of off-nadir to nadir echoes. The clutter map offers a view of surface roughness at ∼75 m length scale, bridging the spatial-scale gap between SHARAD roughness estimates and MOLA-derived parameters.

  11. Three Dimensional Structure of the Mars North Polar Basal Unit from MARSIS data

    Science.gov (United States)

    Frigeri, A.; Orosei, R.; Cartacci, M.; Cicchetti, A.; Mitri, G.; Giuppi, S.; Noschese, R.; Picardi, G.; Plaut, J.

    2012-04-01

    Mars Advanced Radar for Subsurface and Ionospheric Sounding (MARSIS) is an orbital subsurface sounder aboard ESA's Mars Express spacecraft . It transmits a low-frequency radar pulse that is capable of penetrating below the surface, and is reflected by subsurface dielectric discontinuities. MARSIS has been used to probe both the south and the north polar caps of Mars, revealing their thickness and structure. We report on the results of a campaign of observations of the north polar ice cap of Mars that took place between May and December 2011 in uniquely favorable conditions and produced data of unprecedented quality. The focus of this work is the so-called Basal Unit, a dark, ice-rich, complexely layered geologic unit lying stratigraphically between the polar layered deposits and the Vastitas Borealis Formation, and extending beneath most of Planum Boreum and Olympia Planitia. The objective of this work is the to study the full three dimensional structure of the Northern Polar Deposit and in particular of the Basal Unit (BU). It was recently found that the BU consists of two markedly different units, called the Rupes Tenuis unit and the Planum Boreum cavi unit. The Rupes Tenuis unit appears to be older, horizontally layered, and lacking erosional contacts. It has been thus interpreted as the result of precipitation and cold-trapping of dust-laden volatiles. The Planum Boreum cavi unit displays cross-bedding, indicating dune accumulation. Bright layers within it are interpreted as being made of ice-cemented dust, while dark layers should consist of weathered basalt fines. It seems likely that, in places, the Planum Boreum cavi unit rests directly on the Vastitas Borealis, without the Rupes Tenuis unit in between. Because the two units in the BU have formed much earlier than the north polar layered deposits, and at some interval from each other, they bear evidence of past climatic conditions that were very different from present, so that they "could potentially be a

  12. Study of Geological Analogues for Understanding the Radar Sounder Response of the RIME Targets

    Science.gov (United States)

    Thakur, S.; Bruzzone, L.

    2017-12-01

    Radar for Icy Moon Exploration (RIME), the radar sounder onboard the Jupiter Icy Moons Explorer (JUICE), is aimed at characterizing the ice shells of the Jovian moons - Ganymede, Europa and Callisto. RIME is optimized to operate at 9 MHz central frequency with bandwidth of 1 MHz and 2.7 MHz to achieve a penetration depth up to 9 km through ice. We have developed an approach to the definition of a database of simulated RIME radargrams by leveraging the data available from airborne and orbital radar sounder acquisitions over geological analogues of the expected icy moon features. These simulated radargrams are obtained by merging real radar sounder data with models of the subsurface of the Jupiter icy moons. They will be useful for geological interpretation of the RIME radargrams and for better predicting the performance of RIME. The database will also be useful in developing pre-processing and automatic feature extraction algorithms to support data analysis during the mission phase of RIME. Prior to the JUICE mission exploring the Jovian satellites with RIME, there exist radar sounders such as SHARAD (onboard MRO) and MARSIS (onboard MEX) probing Mars, the LRS (onboard SELENE) probing the Moon, and many airborne sounders probing the polar regions of Earth. Analogues have been identified in these places based on similarity in geo-morphological expression. Moreover, other analogues have been identified on the Earth for possible dedicated acquisition campaigns before the RIME operations. By assuming that the subsurface structure of the RIME targets is approximately represented in the analogue radargrams, the difference in composition is accounted for by imposing different dielectric and subsurface attenuation models. The RIME radargrams are simulated from the analogue radargrams using the radar equation and the RIME processing chain and accounting for different possible scenarios in terms of subsurface structure, dielectric properties and instrument parameters. For

  13. MARSIS data and simulation exploited using array databases: PlanetServer/EarthServer for sounding radars

    Science.gov (United States)

    Cantini, Federico; Pio Rossi, Angelo; Orosei, Roberto; Baumann, Peter; Misev, Dimitar; Oosthoek, Jelmer; Beccati, Alan; Campalani, Piero; Unnithan, Vikram

    2014-05-01

    MARSIS is an orbital synthetic aperture radar for both ionosphere and subsurface sounding on board ESA's Mars Express (Picardi et al. 2005). It transmits electromagnetic pulses centered at 1.8, 3, 4 or 5 MHz that penetrate below the surface and are reflected by compositional and/or structural discontinuities in the subsurface of Mars. MARSIS data are available as a collection of single orbit data files. The availability of tools for a more effective access to such data would greatly ease data analysis and exploitation by the community of users. For this purpose, we are developing a database built on the raster database management system RasDaMan (e.g. Baumann et al., 1994), to be populated with MARSIS data and integrated in the PlanetServer/EarthServer (e.g. Oosthoek et al., 2013; Rossi et al., this meeting) project. The data (and related metadata) are stored in the db for each frequency used by MARSIS radar. The capability of retrieving data belonging to a certain orbit or to multiple orbit on the base of latitute/longitude boundaries is a key requirement of the db design, allowing, besides the "classical" radargram representation of the data, and in area with sufficiently hight orbit density, a 3D data extraction, subset and analysis of subsurface structures. Moreover the use of the OGC WCPS (Web Coverage Processing Service) standard can allow calculations on database query results for multiple echoes and/or subsets of a certain data product. Because of the low directivity of its dipole antenna, MARSIS receives echoes from portions of the surface of Mars that are distant from nadir and can be mistakenly interpreted as subsurface echoes. For this reason, methods have been developed to simulate surface echoes (e.g. Nouvel et al., 2004), to reveal the true origin of an echo through comparison with instrument data. These simulations are usually time-consuming, and so far have been performed either on a case-by-case basis or in some simplified form. A code for

  14. An Analysis of MARSIS Radar Flash Memory Data from Lunae Planum, Mars: Searching for Subsurface Structures.

    Science.gov (United States)

    Caprarelli, G.; Orosei, R.; Mastrogiuseppe, M.; Cartacci, M.

    2017-12-01

    Lunae Planum is a Martian plain measuring approximately 1000 km in width and 2000 km in length, centered at coordinates 294°E-11°N. MOLA elevations range from +2500 m to +500 m in the south, gently sloping northward to -500 m. The plain is part of a belt of terrains located between the southern highlands and the northern lowlands, that are transitional in character (e.g., by elevation, age and morphology). These transitional terrains are poorly understood, in part because of their relative lack of major geomorphological features. They record however a very significant part of Mars's geologic history. The most evident features on Lunae Planum's Hesperian surface are regularly spaced, longitudinally striking, wrinkle ridges. These indicate the presence of blind thrust faults cutting through thick stacks of layers of volcanic or sedimentary rocks. The presence of fluidized ejecta craters scattered all over the region suggests also the presence of ice or volatiles in the subsurface. In a preliminary study of Lunae Planum's subsurface we used the Mars Express ground penetrating radar MARSIS dataset [1], in order to detect reflectors that could indicate the presence of fault planes or layering. Standard radargrams however, provided no evidence of changes in value of dielectric constant that could indicate possible geologic discontinuities or stratification of physically diverse materials. We thus started a new investigation based on processing of raw MARSIS data. Here we report on the preliminary results of this study. We searched the MARSIS archive for raw data stored in flash memory. When operating with flash storage, the radar collects 2 frequency bands along-track covering a distance = 100-250 km, depending on the orbiter altitude [2]. We found flash memory data from 24 orbits over the area. We processed the data focusing radar returns in off-nadir directions, to maximize the likelihood of detecting sloping subsurface structures, including those striking parallel

  15. Medical Adhesive-Related Skin Injury Following Emergent Appendectomy: A Case Study of MARSI and Missed Opportunities in Nursing Care.

    Science.gov (United States)

    Britt, Sylvia E; Coles, Karen M; Polson, Shannon S

    The potential for skin damage from adhesive products is documented in the literature. Nevertheless, health care providers continue to lack understanding of the impact and seriousness of skin injury associated with use of tapes or other adhesive devices when applied to a patient with a history or hypersensitivity or allergy to adhesives. A 67-year-old woman with a history of tape allergy underwent emergency appendectomy. Initial removal of an adhesive bandage placed over the surgical incision revealed medical adhesive-related skin injury (MARSI). The largest of the 3 wounds was a Class III skin tear based on the Payne-Martin Classification System. It measured (L) 4.4 cm × (W) 1.8 cm × (D) 0.3 cm and required 3 months to heal. Experiences with this case revealed the need for evidence-based practice innovations to prevent physical, emotional, and economic cost resulting from MARSI. We recommend early identification and careful documentation of susceptibility to MARSI prior to surgery and implementation of consensus-based recommendations for prevention of MARSI as advocated by the MARSI consensus group when preparing patients for surgery and treating wounds.

  16. Premier's imaging IR limb sounder

    Science.gov (United States)

    Kraft, Stefan; Bézy, Jean-Loup; Meynart, Roland; Langen, Jörg; Carnicero Dominguez, Bernardo; Bensi, Paolo; Silvestrin, Pierluigi

    2017-11-01

    The Imaging IR Limb Sounder (IRLS) is one of the two instruments planned on board of the candidate Earth Explorer Core Mission PREMIER. PREMIER stands for PRocess Exploration through Measurements of Infrared and Millimetre-wave Emitted Radiation. PREMIER went recently through the process of a feasibility study (Phase A) within the Earth Observation Envelope Program. Emerging from recent advanced instrument technologies IRLS shall, next to a millimetre-wave limb sounder (called STEAMR), explore the benefits of three-dimensional limb sounding with embedded cloud imaging capability. Such 3D imaging technology is expected to open a new era of limb sounding that will allow detailed studies of the link between atmospheric composition and climate, since it will map simultaneously fields of temperature and many trace gases in the mid/upper troposphere and stratosphere across a large vertical and horizontal field of view and with high vertical and horizontal resolution. PREMIER shall fly in a tandem formation looking backwards to METOP's swath and thereby improve meteorological and environmental analyses.

  17. Measuring tropospheric wind with microwave sounders

    Science.gov (United States)

    Lambrigtsen, B.; Su, H.; Turk, J.; Hristova-Veleva, S. M.; Dang, V. T.

    2017-12-01

    In its 2007 "Decadal Survey" of earth science missions for NASA the U.S. National Research Council recommended that a Doppler wind lidar be developed for a three-dimensional tropospheric winds mission ("3D-Winds"). The technology required for such a mission has not yet been developed, and it is expected that the next Decadal Survey, planned to be released by the end of 2017, will put additional emphasis on the still pressing need for wind measurements from space. The first Decadal Survey also called for a geostationary microwave sounder (GMS) on a Precipitation and All-weather Temperature and Humidity (PATH) mission, which could be used to measure wind from space. Such a sounder, the Geostationary Synthetic Thinned Aperture Radiometer (GeoSTAR), has been developed at the Jet Propulsion Laboratory (JPL). The PATH mission has not yet been funded by NASA, but a low-cost subset of PATH, GeoStorm has been proposed as a hosted payload on a commercial communications satellite. Both PATH and GeoStorm would obtain frequent (every 15 minutes of better) measurements of tropospheric water vapor profiles, and they can be used to derive atmospheric motion vector (AMV) wind profiles, even in the presence of clouds. Measurement of wind is particularly important in the tropics, where the atmosphere is largely not in thermal balance and wind estimates cannot generally be derived from temperature and pressure fields. We report on simulation studies of AMV wind vectors derived from a GMS and from a cluster of low-earth-orbiting (LEO) small satellites (e.g., CubeSats). The results of two separate simulation studies are very encouraging and show that a ±2 m/s wind speed precision is attainable, which would satisfy WMO requirements. A GMS observing system in particular, which can be implemented now, would enable significant progress in the study of atmospheric dynamics. Copyright 2017 California Institute of Technology. Government sponsorship acknowledged

  18. Microwave Atmospheric Sounder on CubeSat

    Science.gov (United States)

    Padmanabhan, S.; Brown, S. E.; Kangaslahti, P.; Cofield, R.; Russell, D.; Stachnik, R. A.; Su, H.; Wu, L.; Tanelli, S.; Niamsuwan, N.

    2014-12-01

    To accurately predict how the distribution of extreme events may change in the future we need to understand the mechanisms that influence such events in our current climate. Our current observing system is not well-suited for observing extreme events globally due to the sparse sampling and in-homogeneity of ground-based in-situ observations and the infrequent revisit time of satellite observations. Observations of weather extremes, such as extreme precipitation events, temperature extremes, tropical and extra-tropical cyclones among others, with temporal resolution on the order of minutes and spatial resolution on the order of few kms (CubeSats that would work in concert with traditional flagship observational systems, such as those manifested on large environmental satellites (i.e. JPSS,WSF,GCOM-W), to monitor weather extremes. A 118/183 GHz sensor would enable observations of temperature and precipitation extremes over land and ocean as well as tropical and extra-tropical cyclones. This proposed project would enable low cost, compact radiometer instrumentation at 118 and 183 GHz that would fit in a 6U Cubesat with the objective of mass-producing this design to enable a suite of small satellites to image the key geophysical parameters needed to improve prediction of extreme weather events. We take advantage of past and current technology developments at JPL viz. HAMSR (High Altitude Microwave Scanning Radiometer), Advanced Component Technology (ACT'08) to enable low-mass, low-power high frequency airborne radiometers. In this paper, we will describe the design and implementation of the 118 GHz temperature sounder and 183 GHz humidity sounder on the 6U CubeSat. In addition, a summary of radiometer calibration and retrieval techniques of temperature and humidity will be discussed. The successful demonstration of this instrument on the 6U CubeSat would pave the way for the development of a constellation which could sample tropospheric temperature and humidity with

  19. An application of the multibeam sounder for seabed backscattering analysis

    Digital Repository Service at National Institute of Oceanography (India)

    Chakraborty, B.; Raju, Y.S.N.

    A theoretical analysis of vertical farfield pattern for a multibeam sounder is performed. The farfield pattern for different steered angles establish the usefulness of present multibeam arrays. An interaction effect of different steered multibeam...

  20. UARS Microwave Limb Sounder (MLS) Level 3AT V001

    Data.gov (United States)

    National Aeronautics and Space Administration — The Microwave Limb Sounder (MLS) Level 3AT data product consists of daily, 65.536 second interval time-ordered vertical profiles of temperature, geopotential height,...

  1. UARS Microwave Limb Sounder (MLS) Level 3AL V001

    Data.gov (United States)

    National Aeronautics and Space Administration — The Microwave Limb Sounder (MLS) Level 3AL data product consists of daily, 4 degree increment latitude-ordered vertical profiles of temperature, geopotential height,...

  2. Ionospheric Electron Densities at Mars: Comparison of Mars Express Ionospheric Sounding and MAVEN Local Measurement

    Czech Academy of Sciences Publication Activity Database

    Němec, F.; Morgan, D. D.; Fowler, C.M.; Kopf, A.J.; Andersson, L.; Gurnett, D. A.; Andrews, D.J.; Truhlík, Vladimír

    2017-01-01

    Roč. 122, č. 12 (2017), s. 12393-12405 E-ISSN 2169-9402 Institutional support: RVO:68378289 Keywords : Mars * ionosphere * MARSIS * Mars Express * MAVEN * radar sounding Subject RIV: BN - Astronomy, Celestial Mechanics, Astrophysics OBOR OECD: Astronomy (including astrophysics,space science) http://onlinelibrary.wiley.com/doi/10.1002/2017JA024629/full

  3. NOAA JPSS Advanced Technology Microwave Sounder (ATMS) Remapped to Cross-track Infrared Sounder (CrIS) Sensor Data Record (SDR) from IDPS

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Advanced Technology Microwave Sounder (ATMS) is a 22 channel microwave sounder on board the Suomi NPP satellite that provides continuous cross-track scanning in...

  4. GRIPS - The Geostationary Remote Infrared Pollution Sounder

    Science.gov (United States)

    Spackman, Ryan; Dickerson, Russell; Schoeberl, Mark; Bloom, Hal; Gordley, Larry; McHugh, Martin; Thompson, Anne; Burrows, John; Zeng, Ning; Marshall, Tom; Fish, Chad; Kim, Jhoon; Park, Rokjin; Warner, Juying; Bhartia, Pawan; Kollonige, Debra

    2013-04-01

    Climate change and air quality are the most pressing environmental issues of the 21st century for America and for the world as a whole. Despite decades of research, the sources and sinks of key greenhouse gases and other pollutants remain highly uncertain making atmospheric composition predictions difficult. The Geostationary Remote Infrared Pollution Sounder (GRIPS) will measure carbon dioxide (CO2), carbon monoxide (CO), and methane (CH4). By using measurements of nitrous oxide (N2O) and the O2 A-band to help correct for clouds and aerosols, GRIPS will achieve unprecedented precision. Together these gases account for about 85% of all climate forcing and they impact atmospheric ozone (O3). GRIPS, employing gas-filter correlation radiometry, uses the target gases themselves in place of dispersive elements to achieve outstanding throughput, sensitivity, and specificity. Because it uses a combination of reflected and thermal IR, GRIPS will detect trace gas concentrations right down to the Earth's surface. When flown in parallel to a UV/VIS sensor such as GEMS on GEO-KOMPSAT-2B over East Asia or the Sentinel 4 on MTG over Europe/Africa, the combination offers powerful finger-printing capabilities to distinguish and quantify diverse pollution sources such as electricity generation, biomass burning, and motor vehicles. From geostationary orbit, GRIPS will be able to focus on important targets to quantify sources, net flux, diurnal cycles, and long-range transport of these key components in the Earth's radiative balance and air quality.

  5. Probing Mars’ atmosphere with ExoMars Mars Climate Sounder

    OpenAIRE

    Irwin, Patrick G. J.; Calcutt, S. B.; Read, P. L.; Bowles, N. E.; Lewis, S.

    2011-01-01

    The 2016 Mars Trace Gas Mission will carry with it the ExoMars Mars Climate Sounder instrument, a development of the very successful Mars Climate Sounder instrument already in orbit about Mars on NASA's Mars Reconnaissance Orbiter spacecraft. EMCS will continue the monitoring of Mars global temperature/pressure/aerosol field, and will also be able to measure the vertical profile of water vapour across the planet from 0 – 50 km. Key components of EMCS will be provided by Oxford, Reading and Ca...

  6. Special Sensor Microwave Imager/Sounder (SSMIS) Temperature Data Record (TDR) in netCDF

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Special Sensor Microwave Imager/Sounder (SSMIS) is a series of passive microwave conically scanning imagers and sounders onboard the DMSP satellites beginning...

  7. Special Sensor Microwave Imager/Sounder (SSMIS) Sensor Data Record (SDR) in netCDF

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Special Sensor Microwave Imager/Sounder (SSMIS) is a series of passive microwave conically scanning imagers and sounders onboard the DMSP satellites beginning...

  8. Spatial noise-aware temperature retrieval from infrared sounder data

    DEFF Research Database (Denmark)

    Malmgren-Hansen, David; Laparra, Valero; Nielsen, Allan Aasbjerg

    2017-01-01

    In this paper we present a combined strategy for the retrieval of atmospheric profiles from infrared sounders. The approach considers the spatial information and a noise-dependent dimensionality reduction approach. The extracted features are fed into a canonical linear regression. We compare...

  9. The DST group ionospheric sounder replacement for JORN

    Science.gov (United States)

    Harris, T. J.; Quinn, A. D.; Pederick, L. H.

    2016-06-01

    The Jindalee Over-the-horizon Radar Network (JORN) is an integral part of Australia's national defense capability. JORN uses a real-time ionospheric model as part of its operations. The primary source of data for this model is a set of 13 vertical-incidence sounders (VIS) scattered around the Australian coast and inland locations. These sounders are a mix of Lowell digisonde portable sounder (DPS)-1 and DPS-4. Both of these sounders, the DPS-1 in particular, are near the end of their maintainable life. A replacement for these aging sounders was required as part of the ongoing sustainment program for JORN. Over the last few years the High-Frequency Radar Branch (HFRB) of the Defence Science and Technology (DST) Group, Australian Department of Defence, has been developing its own sounders based on its successful radar hardware technology. The DST Group VIS solution known as PRIME (Portable Remote Ionospheric Monitoring Equipment) is a 100% duty cycle, continuous wave system that receives the returned ionospheric signal while it is still transmitting and operates the receiver in the near field of the transmitter. Of considerable importance to a successful VIS is the autoscaling software, which takes the ionogram data and produces an ionogram trace (group delay as a function of frequency), and from that produces a set of ionospheric parameters that represent the (bottomside) overhead electron density profile. HFRB has developed its own robust autoscaling software. The performance of DST Group's PRIME under a multitude of challenging ionospheric conditions has been studied. In December 2014, PRIME was trialed at a JORN VIS site collocated with the existing Lowell Digisonde DPS-1. This side-by-side testing determined that PRIME was fit for purpose. A summary of the results of this comparison and example PRIME output will be discussed. Note that this paper compares PRIME with the 25 year old Lowell Digisonde DPS-1, which is planned to be replaced. Our future plans include

  10. Improving retrieval quality for airborne limb sounders by horizontal regularisation

    Directory of Open Access Journals (Sweden)

    J. Ungermann

    2013-01-01

    Full Text Available Modern airborne infrared limb sounders are capable of measuring profiles so fast that neighbouring profiles are very similar to one another. This can be exploited by retrieving whole 2-D cross-sections instead of simple 1-D profiles.

    This paper presents algorithms that are able to perform such a large-scale retrieval and that efficiently produce typical diagnostic quantities. The characteristics and capabilities of the proposed method are analysed and demonstrated in a detailed case study using a series of profiles that were measured by CRISTA-NF (Cryogenic Infrared Spectrometers and Telescope for the Atmosphere–New Frontiers.

    It is shown that cross-section retrievals can either reduce noise-induced artefacts or produce finer vertical structures while maintaining the same image noise level. Further, it is discussed how the presented methodology can also be applied to improve the retrievals for other instrument types including current satellite-borne nadir-sounders and near-future satellite-borne limb sounders.

  11. Observations of atmospheric structure using an acoustic sounder

    International Nuclear Information System (INIS)

    Shaw, N.A.

    1974-11-01

    An acoustic sounder has been used to monitor the vertical temperature structure of the lowest 1.5 km of the atmosphere over the meteorological field site at Argonne National Laboratory since February 1972. Additional records were obtained near St. Louis, Mo., during the month of August. Sounder records obtained during cloudless days on which no major synoptic events occurred are separated into three characteristic phases. The first phase is the rise of the morning inversion associated with increasing solar heating of the surface after dawn. The second phase is the period of strong convective activity that usually exists between about 1100 and 1600 local time in summer and which typically destroys the inversion. The third phase includes the gradual regeneration of the low level inversion through radiation cooling of the lowest levels, followed by a period of persistence throughout the night until the first phase begins again after sunrise. Analysis of records obtained from a single acoustic sounder operating in the vertically-pointing, monostatic mode is subject to the usual ambiguity regarding the relative importance of advective effects and local changes with time. To provide a spatial sampling facility, a mobile acoustic sounding system was constructed during 1972. Details of the mobile antenna acoustic baffle or cuff are given in the Appendix. (19 figures, 1 table) (U.S.)

  12. Dynamic response of the Martian ionosphere to an interplanetary shock: Mars Express and MAVEN observations

    Science.gov (United States)

    Harada, Y.; Gurnett, D. A.; Kopf, A. J.; Halekas, J. S.; Ruhunusiri, S.; Lee, C. O.; Hara, T.; Espley, J.; DiBraccio, G. A.; Mitchell, D. L.; Mazelle, C.; Larson, D. E.; Jakosky, B. M.

    2017-09-01

    Multipoint observations from the Mars Advanced Radar for Subsurface and Ionosphere Sounding (MARSIS) instrument on board Mars Express and the Mars Atmosphere and Volatile EvolutioN (MAVEN) mission reveal a dynamic response of the Martian ionosphere to abrupt variations in the upstream solar wind plasma. On 2 February 2017, MAVEN, located upstream from the Martian bow shock, encountered a corotating interaction region-related interplanetary shock with a sudden enhancement in the dynamic pressure. MARSIS, operating in the upper ionosphere at ˜478 km altitudes and ˜78° solar zenith angles, observed a sharp increase in the local magnetic field magnitude ˜1 min after the shock passage at MAVEN. The time lag is roughly consistent with the expected propagation time of a pressure pulse from the bow shock to the upper ionosphere at the fast magnetosonic speed. Subsequently, remote soundings recorded disturbed signatures of the topside ionosphere below Mars Express.

  13. Multiorder etalon sounder (MOES) development and test for balloon experiment

    Science.gov (United States)

    Hays, Paul B.; Wnag, Jinxue; Wu, Jian

    1993-12-01

    The Fabry-Perot interferometer (FPI), with its high throughput and high spectral resolution has been used in the remote-sensing measurements of the earth's atmospheric composition, winds, and temperatures. The most recent satellite instruments include the Fabry-Perot interferometer flown on the Dynamics Explorer-2 (DE-2), the High Resolution Doppler Imager (HRDI), and the Cryogenic Limb Array Etalon Spectrometer (CLAES) flown on the Upper Atmosphere Research Satellite (UARS). These instruments measure the Doppler line profiles of the emission and absorption of certain atmospheric species (such as atomic oxygen) in the visible and infrared spectral region. The successful space flight of DE-FPI, HRDI, and CLAES on UARS demonstrated the extremely high spectral resolution and ruggedness of the etalon system for the remote sensing of earth and planetary atmospheres. Recently, an innovative FPI focal plane detection technique called the Circle-to-Line Interferometer Optical (CLIO) system was invented at the Space Physics Research Laboratory. The CLIO simplifies the FPI focal plane detection process by converting the circular rings or fringes into a linear pattern similar to that produced by a conventional spectrometer, while retaining the throughput advantage of the etalon interferometer. The combination of FPI and CLIO allows the development of more sensitive Fabry-Perot interferometers in the infrared for the remote sensing of the lower atmospheres of Earth and possibly other planets. The Multiorder Etalon Sounder (MOES), a combination of the rugged etalon and the CLIO, compares very favorably to other space-borne optical instruments in terms of performance versus complexity. The new instrument is expected to be rugged, compact, and very suitable for an operational temperature and moisture sounder. With this technique, the contamination of radiance measurements by emissions of other gases is also minimized. At the Space Physics Research Laboratory (SPRL), the MOES

  14. How Strong is the Case for Geostationary Hyperspectral Sounders?

    Science.gov (United States)

    Kirk-Davidoff, D. B.; Liu, Z.; Jensen, S.; Housley, E.

    2014-12-01

    The NASA GIFTS program designed and constructed a flight-ready hyperspectral infrared sounder for geostationary orbit. Efforts are now underway to launch a constellation of similar instruments. Salient characteristics included 4 km spatial resolution at nadir and 0.6 cm-1 spectral resolution in two infrared bands. Observing system experiments have demonstrated the success of assimilated hyperspectral infrared radiances from IASI and AIRS in improving weather forecast skill. These results provide circumstantial evidence that additional observations at higher spatial and temporal resolution would likely improve forecast skill further. However, there is only limited work investigating the magnitude of this skill improvement in the literature. Here we present a systematic program to quantify the additional skill of a constellation of geostationary hyperspectral sounders through observing system simulation experiments (OSSEs) using the WRF model and the WRFDA data assimilation system. The OSSEs will focus first on high-impact events, such as the forecast for Typhoon Haiyun, but will also address quotidian synoptic forecast skill. The focus will be on short-term forecast skill (additionality can be addressed, but will also consider contingencies, such as the loss of particular elements of the existing system, as well as the degree to which a stand-alone system of hyperspectral sounds would be able to successfully initialize a regional forecast model. A variety of settings, tropical and extratropical, marine and continental will be considered.

  15. Requirements for a Moderate-Resolution Infrared Imaging Sounder (MIRIS)

    Science.gov (United States)

    Pagano, Thomas S.; Aumann, Hartmut H.; Gerber, Andrew J.; Kuai, Le; Gontijo, I.; DeLeon, Berta; Susskind, Joel; Iredell, Lena; Bajpai, Shyam

    2013-01-01

    The high cost of imaging and sounding from space warrants exploration of new methods for obtaining the required information, including changing the spectral band sets, employing new technologies and merging instruments. In some cases we must consider relaxation of the current capability. In others, we expect higher performance. In general our goal is to meet the VIIRS and CrIS requirements while providing the enhanced next generation capabilities: 1) Hyperspectral Imaging in the Vis/NIR bands, 2) High Spatial Resolution Sounding in the Infrared bands. The former will improve the accuracy of ocean color products, aerosols and water vapor, surface vegetation and geology. The latter will enable the high-impact achieved by the current suite of hyperspectral infrared sounders to be achieved by the next generation high resolution forecast models. We examine the spectral, spatial and radiometric requirements for a next generation system and technologies that can be applied from the available inventory within government and industry. A two-band grating spectrometer instrument called the Moderate-resolution Infrared Imaging Sounder (MIRIS) is conceived that, when used with the planned NASA PACE Ocean Color Instrument (OCI) will meet the vast majority of CrIS and VIIRS requirements in the all bands and provide the next generation capabilities desired. MIRIS resource requirements are modest and the Technology Readiness Level is high leading to the expectation that the cost and risk of MIRIS will be reasonable.

  16. Evidence of Convective Redistribution of Carbon Monoxide in Aura Tropospheric Emission Sounder (TES) and Microwave Limb Sounder (MLS) Observations

    Science.gov (United States)

    Manyin, Michael; Douglass, Anne; Schoeberl, Mark

    2010-01-01

    Vertical convective transport is a key element of the tropospheric circulation. Convection lofts air from the boundary layer into the free troposphere, allowing surface emissions to travel much further, and altering the rate of chemical processes such as ozone production. This study uses satellite observations to focus on the convective transport of CO from the boundary layer to the mid and upper troposphere. Our hypothesis is that strong convection associated with high rain rate regions leads to a correlation between mid level and upper level CO amounts. We first test this hypothesis using the Global Modeling Initiative (GMI) chemistry and transport model. We find the correlation is robust and increases as the precipitation rate (the strength of convection) increases. We next examine three years of CO profiles from the Tropospheric Emission Sounder (TES) and Microwave Limb Sounder (MLS) instruments aboard EOS Aura. Rain rates are taken from the Tropical Rainfall Measuring Mission (TRMM) 3B-42 multi-satellite product. Again we find a correlation between mid-level and upper tropospheric CO, which increases with rain rate. Our result shows the critical importance of tropical convection in coupling vertical levels of the troposphere in the transport of trace gases. The effect is seen most clearly in strong convective regions such as the Inter-tropical Convergence Zone.

  17. Satellite Sounder Data Assimilation for Improving Alaska Region Weather Forecast

    Science.gov (United States)

    Zhu, Jiang; Stevens, E.; Zavodsky, B. T.; Zhang, X.; Heinrichs, T.; Broderson, D.

    2014-01-01

    Data assimilation has been demonstrated very useful in improving both global and regional numerical weather prediction. Alaska has very coarser surface observation sites. On the other hand, it gets much more satellite overpass than lower 48 states. How to utilize satellite data to improve numerical prediction is one of hot topics among weather forecast community in Alaska. The Geographic Information Network of Alaska (GINA) at University of Alaska is conducting study on satellite data assimilation for WRF model. AIRS/CRIS sounder profile data are used to assimilate the initial condition for the customized regional WRF model (GINA-WRF model). Normalized standard deviation, RMSE, and correlation statistic analysis methods are applied to analyze one case of 48 hours forecasts and one month of 24-hour forecasts in order to evaluate the improvement of regional numerical model from Data assimilation. The final goal of the research is to provide improved real-time short-time forecast for Alaska regions.

  18. Mechanical Description of the Mars Climate Sounder Instrument

    Science.gov (United States)

    Jau, Bruno M.

    2008-01-01

    This paper introduces the Mars Climate Sounder (MCS) Instrument of the Mars Reconnaissance Orbiter (MRO) spacecraft. The instrument scans the Martian atmosphere almost continuously to systematically acquire weather and climate observations over time. Its primary components are an optical bench that houses dual telescopes with a total of nine channels for visible and infrared sensing, and a two axis gimbal that provides pointing capabilities. Both rotating joints consist of an integrated actuator with a hybrid planetary/harmonic transmission and a twist cap section that enables the electrical wiring to pass through the rotating joint. Micro stepping is used to reduce spacecraft disturbance torques to acceptable levels while driving the stepper motors. To ensure survivability over its four year life span, suitable mechanical components, lubrication, and an active temperature control system were incorporated. Some life test results and lessons learned are provided to serve as design guidelines for actuator parts and flex cables.

  19. Noise performance of microwave humidity sounders over their lifetime

    Science.gov (United States)

    Hans, Imke; Burgdorf, Martin; John, Viju O.; Mittaz, Jonathan; Buehler, Stefan A.

    2017-12-01

    The microwave humidity sounders Special Sensor Microwave Water Vapor Profiler (SSMT-2), Advanced Microwave Sounding Unit-B (AMSU-B) and Microwave Humidity Sounder (MHS) to date have been providing data records for 25 years. So far, the data records lack uncertainty information essential for constructing consistent long time data series. In this study, we assess the quality of the recorded data with respect to the uncertainty caused by noise. We calculate the noise on the raw calibration counts from the deep space views (DSVs) of the instrument and the noise equivalent differential temperature (NEΔT) as a measure for the radiometer sensitivity. For this purpose, we use the Allan deviation that is not biased from an underlying varying mean of the data and that has been suggested only recently for application in atmospheric remote sensing. Moreover, we use the bias function related to the Allan deviation to infer the underlying spectrum of the noise. As examples, we investigate the noise spectrum in flight for some instruments. For the assessment of the noise evolution in time, we provide a descriptive and graphical overview of the calculated NEΔT over the life span of each instrument and channel. This overview can serve as an easily accessible information for users interested in the noise performance of a specific instrument, channel and time. Within the time evolution of the noise, we identify periods of instrumental degradation, which manifest themselves in an increasing NEΔT, and periods of erratic behaviour, which show sudden increases of NEΔT interrupting the overall smooth evolution of the noise. From this assessment and subsequent exclusion of the aforementioned periods, we present a chart showing available data records with NEΔT Fidelity and Uncertainty in Climate data records from Earth Observation (FIDUCEO).

  20. 3D Reconfigurable NoC Multiprocessor Portable Sounder for Plasmaspheric Studies

    Science.gov (United States)

    Dekoulis, George

    2016-07-01

    The paper describes the development of a prototype imaging sounder for studying the irregularities of the ionospheric plasma. Cutting edge three-dimensional reconfigurable logic has been implemented allowing highly-intensive scientific calculations to be performed in hardware. The new parallel processing algorithms implemented offer a significant amount of performance improvement in the range of 80% compared to existing digital sounder implementations. The current system configuration is taking into consideration the modern scientific needs for portability during scientific campaigns. The prototype acts as a digital signal processing experimentation platform for future larger-scale digital sounder instrumentations for measuring complex planetary plasmaspheric environments.

  1. UARS Improved Stratospheric and Mesospheric Sounder (ISAMS) Level 3AL V001

    Data.gov (United States)

    National Aeronautics and Space Administration — The Improved Stratospheric and Mesospheric Sounder (ISAMS) Level 3AL data product consists of daily, 4 degree increment latitude-ordered vertical profiles of...

  2. UARS Improved Stratospheric and Mesospheric Sounder (ISAMS) Level 3AT V001

    Data.gov (United States)

    National Aeronautics and Space Administration — The Improved Stratospheric and Mesospheric Sounder (ISAMS) Level 3AT data product consists of daily, 65.536 second interval time-ordered vertical profiles of...

  3. UARS Microwave Limb Sounder (MLS) Level 3AL V005 (UARML3AL) at GES DISC

    Data.gov (United States)

    National Aeronautics and Space Administration — The Microwave Limb Sounder (MLS) Level 3AL data product consists of daily, 4 degree increment latitude-ordered vertical profiles of temperature, geopotential height,...

  4. UARS Microwave Limb Sounder (MLS) Level 3AT V005 (UARML3AT) at GES DISC

    Data.gov (United States)

    National Aeronautics and Space Administration — The Microwave Limb Sounder (MLS) Level 3AT data product consists of daily, 4 degree increment latitude-ordered vertical profiles of temperature, geopotential height,...

  5. NOAA JPSS Advanced Technology Microwave Sounder (ATMS)-based Tropical Cyclone (TC) Products from NDE

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The JPSS Microwave Sounder-based Tropical Cyclone (TC) Products provide estimates of tropical cyclone maximum wind speed, minimum sea level pressure, radii of 34,...

  6. Noise performance of microwave humidity sounders over their lifetime

    Directory of Open Access Journals (Sweden)

    I. Hans

    2017-12-01

    Full Text Available The microwave humidity sounders Special Sensor Microwave Water Vapor Profiler (SSMT-2, Advanced Microwave Sounding Unit-B (AMSU-B and Microwave Humidity Sounder (MHS to date have been providing data records for 25 years. So far, the data records lack uncertainty information essential for constructing consistent long time data series. In this study, we assess the quality of the recorded data with respect to the uncertainty caused by noise. We calculate the noise on the raw calibration counts from the deep space views (DSVs of the instrument and the noise equivalent differential temperature (NEΔT as a measure for the radiometer sensitivity. For this purpose, we use the Allan deviation that is not biased from an underlying varying mean of the data and that has been suggested only recently for application in atmospheric remote sensing. Moreover, we use the bias function related to the Allan deviation to infer the underlying spectrum of the noise. As examples, we investigate the noise spectrum in flight for some instruments. For the assessment of the noise evolution in time, we provide a descriptive and graphical overview of the calculated NEΔT over the life span of each instrument and channel. This overview can serve as an easily accessible information for users interested in the noise performance of a specific instrument, channel and time. Within the time evolution of the noise, we identify periods of instrumental degradation, which manifest themselves in an increasing NEΔT, and periods of erratic behaviour, which show sudden increases of NEΔT interrupting the overall smooth evolution of the noise. From this assessment and subsequent exclusion of the aforementioned periods, we present a chart showing available data records with NEΔT  <  1 K. Due to overlapping life spans of the instruments, these reduced data records still cover without gaps the time since 1994 and may therefore serve as a first step for constructing long time

  7. Tropical Cyclone Intensity and Position Analysis Using Passive Microwave Imager and Sounder Data

    Science.gov (United States)

    2015-03-26

    Tropical Cyclone Intensity Analysis Using Passive Microwave Imager and Sounder Data THESIS David C. Moreno, Captain, USAF AFIT-ENP-MS-15-M-093...Government and is not subject to copyright protection in the United States. AFIT-ENP-MS-15-M-093 TROPICAL CYCLONE INTENSITY AND POSITION ANALYSIS USING...DISTRIBUTION UNLIMITED. AFIT-ENP-MS-15-M-093 TROPICAL CYCLONE INTENSITY AND POSITION ANALYSIS USING PASSIVE MICROWAVE IMAGER AND SOUNDER DATA THESIS David C

  8. Scanning Mechanism of the FY-3 Microwave Humidity Sounder

    Science.gov (United States)

    Schmid, Manfred; Jing, Li; Hehr, Christian

    2010-01-01

    Astrium GmbH Germany, developed the scanning equipment for the instrument package of the MicroWave Humidity Sounder (MWHS) flying on the FY-3 meteorological satellite (FY means Feng Yun, Wind and Cloud) in a sun-synchronized orbit of 850-km altitude and at an inclination of 98.8 . The scanning mechanism rotates at variable velocity comprising several acceleration / deceleration phases during each revolution. The Scanning Mechanism contains two output shafts, each rotating a parabolic offset Antenna Reflector. The mechanism is operated in closed loop by means of redundant control electronics. MWHS is a sounding radiometer for measurement of global atmospheric water vapour profiles. An Engineering Qualification Model was developed and qualified and a first Flight Model was launched early 2008. The system is now working for more than two years successful in orbit. A second Flight Model of the Antenna Scanning Mechanism and of its associated control electronics was built and delivered to the customer for application on the follow-on spacecraft that will be launched by the end of 2010.

  9. The WHISPER Relaxation Sounder and the CLUSTER Active Archive

    Science.gov (United States)

    Trotignon, J. G.; Décréau, P. M. E.; Rauch, J. L.; Vallières, X.; Rochel, A.; Kougblénou, S.; Lointier, G.; Facskó, G.; Canu, P.; Darrouzet, F.; Masson, A.

    The Waves of HIgh frequency and Sounder for Probing of Electron density by Relaxation (WHISPER) instrument is part of the Wave Experiment Consortium (WEC) of the CLUSTER mission. With the help of the long double sphere antennae of the Electric Field and Wave (EFW) instrument and the Digital Wave Processor (DWP), it delivers active (sounding) and natural (transmitter off) electric field spectra, respectively from 4 to 82 kHz, and from 2 to 80 kHz. These frequency ranges have been chosen to include the electron plasma frequency, which is closely related to the total electron density, in most of the regions encountered by the CLUSTER spacecraft. Presented here is an overview of the WHISPER data products available in the CLUSTER Active Archive (CAA). The instrument and its performance are first recalled. The way the WHISPER products are obtained is then described, with particular attention being paid to the density determination. Both sounding and natural measurements are commonly used in this process, which depends on the ambient plasma regime. This is illustrated using drawings similar to the Bryant plots commonly used in the CLUSTER master science plan. These give a clear overview of typical density values and the parts of the orbits where they are obtained. More information on the applied software or on the quality/reliability of the density determination can also be highlighted.

  10. Sensitivity Analysis for Atmospheric Infrared Sounder (AIRS) CO2 Retrieval

    Science.gov (United States)

    Gat, Ilana

    2012-01-01

    The Atmospheric Infrared Sounder (AIRS) is a thermal infrared sensor able to retrieve the daily atmospheric state globally for clear as well as partially cloudy field-of-views. The AIRS spectrometer has 2378 channels sensing from 15.4 micrometers to 3.7 micrometers, of which a small subset in the 15 micrometers region has been selected, to date, for CO2 retrieval. To improve upon the current retrieval method, we extended the retrieval calculations to include a prior estimate component and developed a channel ranking system to optimize the channels and number of channels used. The channel ranking system uses a mathematical formalism to rapidly process and assess the retrieval potential of large numbers of channels. Implementing this system, we identifed a larger optimized subset of AIRS channels that can decrease retrieval errors and minimize the overall sensitivity to other iridescent contributors, such as water vapor, ozone, and atmospheric temperature. This methodology selects channels globally by accounting for the latitudinal, longitudinal, and seasonal dependencies of the subset. The new methodology increases accuracy in AIRS CO2 as well as other retrievals and enables the extension of retrieved CO2 vertical profiles to altitudes ranging from the lower troposphere to upper stratosphere. The extended retrieval method for CO2 vertical profile estimation using a maximum-likelihood estimation method. We use model data to demonstrate the beneficial impact of the extended retrieval method using the new channel ranking system on CO2 retrieval.

  11. The Mars Climate Sounder In-Flight Positioning Anomaly

    Science.gov (United States)

    Jau, Bruno M.; Kass, David

    2008-01-01

    The paper discusses the Mars Climate Sounder (MCS) instrument s in-flight positioning errors and presents background material about it. A short overview of the instrument s science objectives and data acquisition techniques is provided. The brief mechanical description familiarizes the reader with the MCS instrument. Several key items of the flight qualification program, which had a rigorous joint drive test program but some limitations in overall system testing, are discussed. Implications this might have had for the flight anomaly, which began after several months of flawless space operation, are mentioned. The detection, interpretation, and instrument response to the errors is discussed. The anomaly prompted engineering reviews, renewed ground, and some in-flight testing. A summary of these events, including a timeline, is included. Several items of concern were uncovered during the anomaly investigation, the root cause, however, was never found. The instrument is now used with two operational constraints that work around the anomaly. It continues science gathering at an only slightly diminished pace that will yield approximately 90% of the originally intended science.

  12. Geostationary Microwave Sounders: Science, Applications and the Geostar Instrument Concept

    Science.gov (United States)

    Lambrigtsen, Bjorn; Gaier, Todd; Kangaslahti, Pekka; Lim, Boon; Tanner, Alan

    2011-01-01

    Microwave atmospheric sounders have long provided some of the most imporant data for use in numerical weather prediction (NWP) and have played an important role in atmospheric weather and climate research. With 7 US satellites now carrying such sensors, we are in a 'golden age' of microwave remote sensing of the atmosphere. However, as this fleet ages and is replaced by a smaller number of new sensors in the coming yars, the main shortcoming of sensors in low Earth orbit -i.e. poor spacial and temporal converage and sampling - will become more apparent. Placing such sensors on geostationary satellites, enabling time-continuous views of large portions of the Earth disc, would solve this problem. but the GEO orbit is approximately 40 times higher than a typical LEO orbit, which requires antenna apertures also about 40 times larger than for LEO systems to maintain spatial resolution, and it has not been feasible to develop such systems. Recently, a solution to this problem has appeared in the form of aperture synthesis.

  13. Cloud retrieval using infrared sounder data - Error analysis

    Science.gov (United States)

    Wielicki, B. A.; Coakley, J. A., Jr.

    1981-01-01

    An error analysis is presented for cloud-top pressure and cloud-amount retrieval using infrared sounder data. Rms and bias errors are determined for instrument noise (typical of the HIRS-2 instrument on Tiros-N) and for uncertainties in the temperature profiles and water vapor profiles used to estimate clear-sky radiances. Errors are determined for a range of test cloud amounts (0.1-1.0) and cloud-top pressures (920-100 mb). Rms errors vary by an order of magnitude depending on the cloud height and cloud amount within the satellite's field of view. Large bias errors are found for low-altitude clouds. These bias errors are shown to result from physical constraints placed on retrieved cloud properties, i.e., cloud amounts between 0.0 and 1.0 and cloud-top pressures between the ground and tropopause levels. Middle-level and high-level clouds (above 3-4 km) are retrieved with low bias and rms errors.

  14. MTG infrared sounder detection chain: first radiometric test results

    Science.gov (United States)

    Dumestier, D.; Pistone, F.; Dartois, T.; Blazquez, E.

    2017-11-01

    Europe's next fleet of geostationary meteorological satellites, MeteoSat Third Generation, will introduce new functions in addition to continuity of high-resolution meteorological data. The atmosphere Infrared Sounder (IRS), as high -end instrument, is part of this challenging program. IRS principle is a Fourier Transform Interferometer, which allows recomposing atmospheric spectrum after infrared photons detection. Transmission spectrums will be used to support numerical weather prediction. IRS instrument is able to offer full disk coverage in one hour, an on-ground resolution of 4 by 4 km, in two spectral bands (MWIR: 1600 to 2175cm-1 and LWIR: 700 to 1210cm-1) with a spectral resolution of 0.6cm-1. Among critical technologies and processes, IRS detection chain shall offer outstanding characteristics in terms of radiometric performance like Signal to Noise Ratio (SNR), dynamic range and linearity. Selected detectors are HgCdTe two-dimensions arrays, cooled at 55 Kelvins, hybridized on snapshot silicon read-out circuit at 160x160 format. Video electronics present 16 bits resolution, and the whole detection chain (Detectors and electronics) permits to reach SNR between 2 000 and 10 000 as requested by the application. Radiometric onground test results performed on design representative detection chains are presented and are confirming the challenging phase A design choices.

  15. Atmospheric Sounder Spectrometer for Infrared Spectral Technology (ASSIST) Instrument Handbook

    Energy Technology Data Exchange (ETDEWEB)

    Flynn, Connor J. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Atmospheric Radiation Measurement (ARM) Program

    2016-03-01

    The Atmospheric Sounder Spectrometer for Infrared Spectral Technology (ASSIST) measures the absolute infrared (IR) spectral radiance (watts per square meter per steradian per wavenumber) of the sky directly above the instrument. More information about the instrument can be found through the manufacturer’s website. The spectral measurement range of the instrument is 3300 to 520 wavenumbers (cm-1) or 3-19.2 microns for the normal-range instruments and 3300 to 400 cm-1 or 3-25 microns, for the extended-range polar instruments. Spectral resolution is 1.0 cm-1. Instrument field-of-view is 1.3 degrees. Calibrated sky radiance spectra are produced on cycle of about 141 seconds with a group of 6 radiance spectra zenith having dwell times of about 14 seconds each interspersed with 55 seconds of calibration and mirror motion. The ASSIST data is comparable to the Atmospheric Emitted Radiance Interferometer (AERI) data and can be used for 1) evaluating line-by-line radiative transport codes, 2) detecting/quantifying cloud effects on ground-based measurements of infrared spectral radiance (and hence is valuable for cloud property retrievals), and 3) calculating vertical atmospheric profiles of temperature and water vapor and the detection of trace gases.

  16. Laser Atmospheric Wind Sounder (LAWS) phase 1. Volume 2

    Science.gov (United States)

    1990-04-01

    This report summarizes and documents the results of the 12-month phase 1 work effort. The objective of phase 1 was to establish the conceptional definition of the laser atmospheric wind sounder (LAWS) sensor system, including accommodations analyses to ensure compatibility with the Space Station Freedom (SSF) and the Earth Observing System (EOS) Polar Orbiting Platform (POP). Various concepts were investigated with trade studies performed to select the configuration to be carried forward to the phase 2 Preliminary Design Definition. A summary of the LAWS system and subsystem trade studies that were performed leading to the baseline design configuration is presented in the appendix. The overall objective of the LAWS Project is to define, design, and implement an operational space based facility, LAWS, for accurate measurement of Earth wind profiles. Phase 1 addressed three major areas: (1) requirements definition; (2) instrument concepts and configurations; and (3) performance analysis. For the LAWS instrument concepts and configurations, the issues which press the technological state of the art are reliable detector lifetime and laser performance and lifetime. Lag angle compensation, pointing accuracy, satellite navigation, and telescope design are significant technical issues, but they are considered to be currently state of the art. The primary issues for performance analysis concern interaction with the atmosphere in terms of backscatter and attenuation, wind variance, and cloud blockage. The phase 1 tasks were formulated to address these significant technical issues and demonstrate the technical feasibility of the LAWS concept. Primary emphasis was placed on analysis/trade and identification of candidate concepts. Promising configurations were evaluated for performance, sensitivities, risks, and budgetary costs. Lockheed's baseline LAWS configuration is presented.

  17. Validation of Aura Microwave Limb Sounder HCl Measurements

    Science.gov (United States)

    Froidevaux, L.; Jiang, Y. B.; Lambert, A.; Livesey, N. J.; Read, W. G.; Waters, J. W.; Fuller, R. A.; Marcy, T. P.; Popp, P. J.; Gao, R. S.; hide

    2008-01-01

    The Earth Observing System (EOS) Microwave Limb Sounder (MLS) aboard the Aura satellite has provided daily global HCl profiles since August 2004. We provide a characterization of the resolution, random and systematic uncertainties, and known issues for the version 2.2 MLS HCl data. The MLS sampling allows for comparisons with many (1500 to more than 3000) closely matched profiles from the Halogen Occultation Experiment (HALOE) and Atmospheric Chemistry Experiment Fourier Transform Spectrometer (ACE-FTS). These data sets provide HCl latitudinal distributions that are, overall, very similar to those from (coincident) MLS profiles, although there are some discrepancies in the upper stratosphere between the MLS and HALOE gradients. As found in previous work, MLS and ACE HCl profiles agree very well (within approximately 5%, on average), but the MLS HCl abundances are generally larger (by 10-20%) than HALOE HCl. The bias versus HALOE is unlikely to arise mostly from MLS, as a similar systematic bias (of order 15%) is not observed between average MLS and balloon-borne measurements of HCl, obtained over Fort Sumner, New Mexico, in 2004 and 2005. At the largest pressure (147 hPa) for MLS HCl, a high bias (approximately 0.2 ppbv) is apparent in analyses of low to midlatitude data versus in situ aircraft chemical ionization mass spectrometry (CIMS) HCl measurements from the Aura Validation Experiment (AVE) campaigns in 2004, 2005, and 2006; this bias is also observed in comparisons of MLS and aircraftHCl/O3 correlations. Good agreement between MLS and CIMS HCl is obtained at 100 to 68 hPa. The recommended pressure range for MLS HCl is from 100 to 0.15 hPa.

  18. From Aircraft to GEO: Using Microwave Sounders to Observe the Atmosphere

    Science.gov (United States)

    Lambrigtsen, B.; Brown, S.; Gaier, T.; Tanner, A.; Kangaslahti, P.; Lim, B.; Tanabe, J.

    2010-12-01

    Although hyperspectral infrared sounders, such as AIRS and IASI, have become important weather and climate sensors for both operational and research use, microwave sounders, in spite of their coarser spatial resolution and poorer sounding accuracy, still play a crucial role. That is because infrared sounders do not sample certain weather and climate regimes well, particularly those associated with full cloud cover and storms. In part one this paper we review recent results obtained with the High Altitude MMIC Sounding Radiometer (HAMSR), an aircraft-based microwave sounder developed at the Jet Propulsion Laboratory and recently deployed on the NASA Global Hawk unmanned aircraft as part of the NASA Genesis and Rapid Intensification Processes (GRIP) hurricane field campaign. Here the emphasis is on the benefits of the high spatial resolution that is possible with suborbital sensors. In part two we will review plans to deploy a microwave sounder on a geostationary satellite in the relatively near future, where the emphasis is on the high temporal resolution that is possible from GEO. We focus on the Geostationary Synthetic Thinned Aperture Radiometer (GeoSTAR) now being developed at JPL for the Precipitation and All-weather Temperature and Humidity (PATH) mission - one of the 15 missions recommended by the National Research Council in its recent “decadal survey” of Earth satellite missions.

  19. Seasonal and diel patterns in sedimentary flux of krill fecal pellets recorded by an echo sounder

    KAUST Repository

    Røstad, Anders

    2013-11-01

    We used a moored upward-facing 200 kHz echo sounder to address sedimentation of fecal pellets (FPs) from dielly migrating Meganyctiphanes norvegica. The echo sounder was located on the bottom at 150 m depth in the Oslofjord, Norway, and was cabled to shore for continuous measurements during winter and spring. Records of sinking pellets were for the first time observed with an echo sounder. Seasonal patterns of sedimentation of krill FPs were strongly correlated with data from continuous measurement of fluorescence, which illustrate the development of the spring bloom. Sedimenting particles were first observed as fluorescence values started to increase at the end of February and continued to increase until the bloom suddenly culminated at the end of March. This collapse of the bloom was detected on the echo sounder as a pulse of slowly sinking acoustic targets over a 2 d period. Prior to this event, there was a strong diel pattern in sedimentation, which correlated, with some time lag, with the diel migration of krill foraging at night near the surface. Pellet average sinking speeds ranged between 423 m d−1 and 804 m d−1, with a strong relation to pellet target strength, which is an acoustic proxy for size. This novel approach shows that echo sounders may be a valuable tool in studies of vertical pellet flux and, thereby, carbon flux, providing temporal resolution and direct observation of the sedimentation process, which are not obtained from standard methods.

  20. USING A MOBILE RADIO ECHO SOUNDER TO MEASURE BEDROCK TOPOGRAPHY IN EAST QUEEN MAUD LAND, ANTARCTICA

    OpenAIRE

    マエノ, ヒデオ; カミヤマ, コウキチ; フルカワ, テルオ; ワタナベ, オキツグ; ナルセ, レンジ; オカモト, ケンイチ; スイツ, タケシ; ウラツカ, セイホ; Hideo, MAENO; Kokichi, KAMIYAMA; Teruo, FURUKAWA; Okitsugu, WATANABE; Renji, NARUSE; Kenichi, OKAMOTO; Takeshi, SUITZ

    1994-01-01

    As part of the Dome-Fuji Project, the topography of the bedrock over a wide area around Dome-F and along routes from Dome-F to S16 (about 1000 km distance) was surveyed by radio echo sounder with a continuous recording system. The bedrock topography was successfully measured under ice sheets thicker than 3500m, and the performance of the radio echo sounder was confirmed. The highest point of Dome-F was located in the basin like topography of the bedrock, surrounded by more elevated areas. The...

  1. Development and characterization of the superconducting integrated receiver channel of the TELIS atmospheric sounder

    NARCIS (Netherlands)

    De Lange, Gert; Birk, Manfred; Boersma, Dick; Dercksen, Johannes; Dmitriev, Pavel; Ermakov, Andrey B.; Filippenko, Lyudmila V.; Golstein, Hans; Hoogeveen, Ruud W. M.; de Jong, Leo; Khudchenko, Andrey V.; Kinev, Nickolay V.; Kiselev, Oleg S.; van Kuik, Bart; de Lange, Arno; van Rantwijk, Joris; Selig, Avri M.; Sobolev, Alexander S.; Torgashin, Mikhail Yu; de Vries, Ed; Wagner, Georg; Yagoubov, Pavel A.; Koshelets, Valery P.

    The balloon-borne instrument TELIS (TErahertz and submillimetre LImb Sounder) is a three-channel superconducting heterodyne spectrometer for atmospheric research use. It detects spectral emission lines of stratospheric trace gases that have their rotational transitions at THz frequencies. One of the

  2. Using multi-beam echo sounder backscatter data for sediment classification in very shallow water environments

    NARCIS (Netherlands)

    Amiri-Simkooei, A.R.; Snellen, M.; Simons, D.G.

    2009-01-01

    In a recent work described in Ref. [1], an angle-independent methodology was developed to use the multi-beam echo sounder backscatter (MBES) data for the seabed sediment classification. The method employs the backscatter data at a certain angle to obtain the number of sediment classes and to

  3. Whisper, a resonance sounder and wave analyser: Performances and perspectives for the Cluster mission

    DEFF Research Database (Denmark)

    Decreau, P.M.E.; Fergeau, P.; KrannoselsKikh, V.

    1997-01-01

    The WHISPER sounder on the Cluster spacecraft is primarily designed to provide an absolute measurement of the total plasma density within the range 0.2-80 cm(-3). This is achieved by means of a resonance sounding technique which has already proved successful in the regions to be explored. The wav...

  4. Deep convective cloud characterizations from both broadband imager and hyperspectral infrared sounder measurements

    Science.gov (United States)

    Ai, Yufei; Li, Jun; Shi, Wenjing; Schmit, Timothy J.; Cao, Changyong; Li, Wanbiao

    2017-02-01

    Deep convective storms have contributed to airplane accidents, making them a threat to aviation safety. The most common method to identify deep convective clouds (DCCs) is using the brightness temperature difference (BTD) between the atmospheric infrared (IR) window band and the water vapor (WV) absorption band. The effectiveness of the BTD method for DCC detection is highly related to the spectral resolution and signal-to-noise ratio (SNR) of the WV band. In order to understand the sensitivity of BTD to spectral resolution and SNR for DCC detection, a BTD to noise ratio method using the difference between the WV and IR window radiances is developed to assess the uncertainty of DCC identification for different instruments. We examined the case of AirAsia Flight QZ8501. The brightness temperatures (Tbs) over DCCs from this case are simulated for BTD sensitivity studies by a fast forward radiative transfer model with an opaque cloud assumption for both broadband imager (e.g., Multifunction Transport Satellite imager, MTSAT-2 imager) and hyperspectral IR sounder (e.g., Atmospheric Infrared Sounder) instruments; we also examined the relationship between the simulated Tb and the cloud top height. Results show that despite the coarser spatial resolution, BTDs measured by a hyperspectral IR sounder are much more sensitive to high cloud tops than broadband BTDs. As demonstrated in this study, a hyperspectral IR sounder can identify DCCs with better accuracy.

  5. P-sounder: an airborne P-band ice sounding radar

    DEFF Research Database (Denmark)

    Dall, Jørgen; Skou, Niels; Kusk, Anders

    2007-01-01

    is to test new ice sounding techniques, e.g. polarimetry, synthetic aperture processing, and coherent clutter suppression. A system analysis involving ice scattering models confirms that it is feasible to detect the bedrock through 4 km of ice and to detect deep ice layers. The ice sounder design features...

  6. Instrument technology for magnetosphere plasma imaging from high Earth orbit. Design of a radio plasma sounder

    Science.gov (United States)

    Haines, D. Mark; Reinisch, Bodo W.

    1995-01-01

    The use of radio sounding techniques for the study of the ionospheric plasma dates back to G. Briet and M. A. Tuve in 1926. Ground based swept frequency sounders can monitor the electron number density (N(sub e)) as a function of height (the N(sub e) profile). These early instruments evolved into a global network that produced high-resolution displays of echo time delay vs frequency on 35-mm film. These instruments provided the foundation for the success of the International Geophysical Year (1958). The Alouette and International Satellites for Ionospheric Studies (ISIS) programs pioneered the used of spaceborne, swept frequency sounders to obtain N(sub e) profiles of the topside of the ionosphere, from a position above the electron density maximum. Repeated measurements during the orbit produced an orbital plane contour which routinely provided density measurements to within 10%. The Alouette/ISIS experience also showed that even with a high powered transmitter (compared to the low power sounder possible today) a radio sounder can be compatible with other imaging instruments on the same satellite. Digital technology was used on later spacecraft developed by the Japanese (the EXOS C and D) and the Soviets (Intercosmos 19 and Cosmos 1809). However, a full coherent pulse compression and spectral integrating capability, such as exist today for ground-based sounders (Reinisch et al., 1992), has never been put into space. NASA's 1990 Space Physics Strategy Implementation Study "The NASA Space Physics Program from 1995 to 2010" suggested using radio sounders to study the plasmasphere and the magnetopause and its boundary layers (Green and Fung, 1993). Both the magnetopause and plasmasphere, as well as the cusp and boundary layers, can be observed by a radio sounder in a high-inclination polar orbit with an apogee greater than 6 R(sub e) (Reiff et al., 1994; Calvert et al., 1995). Magnetospheric radio sounding from space will provide remote density measurements of

  7. CubeSat infrared atmospheric sounder (CIRAS) NASA InVEST technology demonstration

    Science.gov (United States)

    Pagano, Thomas S.

    2017-02-01

    Infrared sounders measure the upwelling radiation of the Earth in the Midwave Infrared (MWIR) and Longwave Infrared (LWIR) region of the spectrum with global daily coverage from space. The observed radiances are assimilated into weather forecast models and used to retrieve lower tropospheric temperature and water vapor for climate studies. There are several operational sounders today including the Atmospheric Infrared Sounder (AIRS) on Aqua, the Crosstrack Infrared Sounder (CrIS) on Suomi NPP and JPSS, and the Infrared Atmospheric Sounding Interferometer (IASI) on the MetOp spacecraft. The CubeSat Infrared Atmospheric Sounder (CIRAS) is a NASA In-flight Validation of Earth Science Technologies (InVEST) program to demonstrate three new instrument technologies in an imaging sounder configuration. The first is a 2D array of High Operating Temperature Barrier Infrared Detector (HOT-BIRD) material, selected for its high uniformity, low cost, low noise and higher operating temperatures than traditional materials. The detectors are hybridized to a commercial ROIC and commercial camera electronics. The second technology is a MWIR Grating Spectrometer (MGS) designed to provide imaging spectroscopy for atmospheric sounding in a CubeSat volume. The MGS employs an immersion grating or grism, has no moving parts, and is based on heritage spectrometers including the OCO- 2. The third technology is a Black Silicon infrared blackbody calibration target. The Black Silicon offers very low reflectance over a broad spectral range on a flat surface and is more robust than carbon nanotubes. JPL will also develop the mechanical, electronic and thermal subsystems for the CIRAS payload. The spacecraft will be a commercially available CubeSat. The integrated system will be a complete 6U CubeSat capable of measuring temperature and water vapor profiles with good lower tropospheric sensitivity. The low cost of CIRAS enables multiple units to be flown to improve temporal coverage or measure 3D

  8. UARS Improved Stratospheric and Mesospheric Sounder (ISAMS) Level 3AL V010 (UARIS3AL) at GES DISC

    Data.gov (United States)

    National Aeronautics and Space Administration — The Improved Stratospheric and Mesospheric Sounder (ISAMS) Level 3AL data product consists of daily, 4 degree increment latitude-ordered vertical profiles of...

  9. UARS Improved Stratospheric and Mesospheric Sounder (ISAMS) Level 3AT V010 (UARIS3AT) at GES DISC

    Data.gov (United States)

    National Aeronautics and Space Administration — The Improved Stratospheric and Mesospheric Sounder (ISAMS) Level 3AT data product consists of daily, 65.536 second interval time-ordered vertical profiles of...

  10. Hurricane and Severe Storm Sentinel (HS3) Scanning High-Resolution Interferometer Sounder (S-HIS) V1

    Data.gov (United States)

    National Aeronautics and Space Administration — The Hurricane and Severe Storm Sentinel (HS3) Scanning High-Resolution Interferometer Sounder (S-HIS) measures emitted thermal radiances that are used to obtain...

  11. Space Plasma Slab Studies using a new 3D Embedded Reconfigurable MPSoC Sounder

    Science.gov (United States)

    Dekoulis, George

    2016-07-01

    This paper presents recent ionospheric slab thickness measurements using a new mobile digital sounder system. The datasets obtained have been compared to the results of existing sounders in operation. The data validity has been verified. The slab thickness data allow constant monitoring of the lower ionosphere revealing the dynamic trends of the physical processes being involved. The prototype offers a tremendous amount of hardware processing power and a previously unseen response time in servicing the input and output data interfaces. This has been enabled by incorporating the latest three-dimensional Ultrascale+ technologies available commercially from the reconfigurable Field Programmable Gate Array (FPGA) computing industry. Furthermore, a previously developed Network-on-Chip (NoC) design methodology has been incorporated for connecting and controlling the application driven multiprocessor network. The system determines electron distributions, aggregate electromagnetic field gradients and plasma current density.

  12. Science Highlights and Lessons Learned from the Atmospheric Infrared Sounder (AIRS)

    Science.gov (United States)

    Pagano, Thomas S.; Fetzer, Eric J.; Suda, Jarrod; Licata, Steve

    2011-01-01

    The Atmospheric Infrared Sounder (AIRS) and companion instrument, the Advanced Microwave Sounding Unit (AMSU) on the NASA Earth Observing System Aqua spacecraft are facility instruments designed to support measurements of atmospheric temperature, water vapor and a wide range of atmospheric constituents in support of weather forecasting and scientific research in climate and atmospheric chemistry. This paper is an update to the science highlights from a paper by the authors released last year and also looks back at the lessons learned and future needs of the scientific community. These lessons not only include requirements on the measurements, but scientific shortfalls as well. Results from the NASA Science Community Workshop in IR and MW Sounders relating to AIRS and AMSU requirements and concerns are covered and reflect much of what has been learned and what is needed for future atmospheric sounding from Low Earth Orbit.

  13. Underwater Acoustic Transponders Tracking While Mapping With A Multibeam Echo-Sounder

    Science.gov (United States)

    de Moustier, C. P.; Franzheim, A.; Testa, W.; Burns, J. M.; Foy, R.

    2010-12-01

    A 160 kHz multibeam echo-sounder was used to interrogate and receive the replies from custom-built miniature underwater acoustic transponders attached to the carapace of king crabs in Womens Bay, Alaska. This new application of multibeam echo-sounders combines acoustic tracking and mapping, thus providing environmental context to the tracking information. Each transponder replies with its own coded sequence that stands out from other echoes received by the sonar. Range and bearing of the replies from multiple transponders can be obtained in a single sonar ping. The king crab experiment was done in 25-35 m of water depth, and the system was successfully tested without animals at 190 m depth. Work supported by NOAA's Undersea Research Program Grant G4768, with field work support from NOAA-NMFS/AFSC/RACE and Electronic Navigation Ltd.

  14. Whisper, a resonance sounder and wave analyser: Performances and perspectives for the Cluster mission

    DEFF Research Database (Denmark)

    Decreau, P.M.E.; Fergeau, P.; KrannoselsKikh, V.

    1997-01-01

    The WHISPER sounder on the Cluster spacecraft is primarily designed to provide an absolute measurement of the total plasma density within the range 0.2-80 cm(-3). This is achieved by means of a resonance sounding technique which has already proved successful in the regions to be explored. The wave...... analysis function of the instrument is provided by FFT calculation. Compared with the swept frequency wave analysis of previous sounders, this technique has several new capabilities. In particular, when used for natural wave measurements (which cover here the 2-80 kHz range), it offers a flexible trade...... mode. Special attention has been paid to the coordination of WHISPER operations with the wave instruments, as well as with the low-energy particle counters. When operated from the multi-spacecraft Cluster, the WHISPER instrument is expected to contribute in particular to the study of plasma waves...

  15. Demonstrating the Operational Value of Atmospheric Infrared Sounder (AIRS) Profiles in the Pre-Convective Environment

    Science.gov (United States)

    Kozlowski, Danielle; Zavodsky, Bradley; Stano, Geoffrey; Jedlovec, Gary

    2011-01-01

    The Short-term Prediction Research and Transition (SPoRT) is a project to transition those NASA observations and research capabilities to the weather forecasting community to improve the short-term regional forecasts. This poster reviews the work to demonstrate the value to these forecasts of profiles from the Atmospheric Infrared Sounder (AIRS) instrument on board the Aqua satellite with particular assistance in predicting thunderstorm forecasts by the profiles of the pre-convective environment.

  16. Combining Passive Microwave Sounders with CYGNSS information for improved retrievals: Observations during Hurricane Harvey

    Science.gov (United States)

    Schreier, M. M.

    2017-12-01

    The launch of CYGNSS (Cyclone Global Navigation Satellite System) has added an interesting component to satellite observations: it can provide wind speeds in the tropical area with a high repetition rate. Passive microwave sounders that are overpassing the same region can benefit from this information, when it comes to the retrieval of temperature or water profiles: the uncertainty about wind speeds has a strong impact on emissivity and reflectivity calculations with respect to surface temperature. This has strong influences on the uncertainty of retrieval of temperature and water content, especially under extreme weather conditions. Adding CYGNSS information to the retrieval can help to reduce errors and provide a significantly better sounder retrieval. Based on observations during Hurricane Harvey, we want to show the impact of CYGNSS data on the retrieval of passive microwave sensors. We will show examples on the impact on the retrieval from polar orbiting instruments, like the Advanced Technology Microwave Sounder (ATMS) and AMSU-A/B on NOAA-18 and 19. In addition we will also show the impact on retrievals from HAMSR (High Altitude MMIC Sounding Radiometer), which was flying on the Global Hawk during the EPOCH campaign. We will compare the results with other observations and estimate the impact of additional CYGNSS information on the microwave retrieval, especially on the impact in error and uncertainty reduction. We think, that a synergetic use of these different data sources could significantly help to produce better assimilation products for forecast assimilation.

  17. On the remote sensing of cloud properties from satellite infrared sounder data

    Science.gov (United States)

    Yeh, H. Y. M.

    1984-01-01

    A method for remote sensing of cloud parameters by using infrared sounder data has been developed on the basis of the parameterized infrared transfer equation applicable to cloudy atmospheres. The method is utilized for the retrieval of the cloud height, amount, and emissivity in 11 micro m region. Numerical analyses and retrieval experiments have been carried out by utilizing the synthetic sounder data for the theoretical study. The sensitivity of the numerical procedures to the measurement and instrument errors are also examined. The retrieved results are physically discussed and numerically compared with the model atmospheres. Comparisons reveal that the recovered cloud parameters agree reasonably well with the pre-assumed values. However, for cases when relatively thin clouds and/or small cloud fractional cover within a field of view are present, the recovered cloud parameters show considerable fluctuations. Experiments on the proposed algorithm are carried out utilizing High Resolution Infrared Sounder (HIRS/2) data of NOAA 6 and TIROS-N. Results of experiments show reasonably good comparisons with the surface reports and GOES satellite images.

  18. An Assessment of Data from the Advanced Technology Microwave Sounder at the Met Office

    Directory of Open Access Journals (Sweden)

    Amy Doherty

    2015-01-01

    Full Text Available An appraisal of the Advanced Technology Microwave Sounder (ATMS for use in numerical weather prediction (NWP is presented, including an assessment of the data quality, the impact on Met Office global forecasts in preoperational trials, and a summary of performance over a period of 17 months operational use. After remapping, the noise performance (NEΔT of the tropospheric temperature sounding channels is evaluated to be approximately 0.1 K, comparing favourably with AMSU-A. However, the noise is not random, differences between observations and simulations based on short-range forecast fields show a spurious striping effect, due to 1/f noise in the receiver. The amplitude of this signal is several tenths of a Kelvin, potentially a concern for NWP applications. In preoperational tests, adding ATMS data to a full Met Office system already exploiting data from four microwave sounders improves southern hemisphere mean sea level pressure forecasts in the 2- to 5-day range by 1-2%. In operational use, where data from five other microwave sounders is assimilated, forecast impact is typically between −0.05 and −0.1 J/kg (3.4% of total mean impact per day over the period 1 April to 31 July 2013. This suggests benefits beyond redundancy, associated with reducing already small analysis errors.

  19. The Expected Impacts of NPOESS Microwave and Infrared Sounder Radiances on Operational Numerical Weather Prediction and Data Assimilation Systems

    Science.gov (United States)

    Swadley, S. D.; Baker, N.; Derber, J.; Collard, A.; Hilton, F.; Ruston, B.; Bell, W.; Candy, B.; Kleespies, T. J.

    2009-12-01

    The NPOESS atmospheric sounding functionality will be accomplished using two separate sensor suites, the combined infrared (IR) and microwave (MW) sensor suite (CrIMSS), and the Microwave Imager/Sounder (MIS) instrument. CrIMSS consists of the Cross Track Infrared Sounder (CrIS) and the cross track Advanced Technology Microwave Sounder (ATMS), and is scheduled to fly on the NPOESS Preparatory Project (NPP), and NPOESS operational flight units C1 and C3. The MIS is a conical scanning polarimetric imager and sounder patterned after the heritage WindSat, and DMSP Special Sensor Microwave Imagers and Sounders (SSMI and SSMIS), and is scheduled for flight units C2, C3 and C4. ATMS combines the current operational Advanced Microwave Sounding Unit (AMSU) and the Microwave Humidity Sounder (MHS), but with an additional channel in the 51.76 GHz oxygen absorption region and 3 additional channels in the 165.5 and 183 GHz water vapor absorption band. CrIS is a Fourier Transform Spectrometer and will provide 159 shortwave IR channels, 433 mid-range IR channels, and 713 longwave IR channels. The heritage sensors for CrIS are the NASA Advanced Infrared Sounder (AIRS) and the MetOp-A Infrared Atmospheric Sounding Interferometer (IASI). Both AIRS and IASI are high quality, high spectral resolution sounders which represent a significant improvement in the effective vertical resolution over previous IR sounders. This presentation will give an overview of preparations underway for day-1 monitoring of NPP/NPOESS radiances, and subsequent operational radiance assimilation. These preparations capitalize on experience gained during the pre-launch preparations, sensor calibration/validation and operational assimilation for the heritage sensors. One important step is to use pre-flight sensor channel specifications, noise estimates and knowledge of the antenna patterns, to generate and test proxy NPP/NPOESS sensor observations in existing assimilation systems. Other critical factors for

  20. An FPGA-Based Adaptable 200 MHz Bandwidth Channel Sounder for Wireless Communication Channel Characterisation

    Directory of Open Access Journals (Sweden)

    David L. Ndzi

    2011-01-01

    Full Text Available This paper describes the development of a fast adaptable FPGA-based wideband channel sounder with signal bandwidths of up to 200 MHz and channel sampling rates up to 5.4 kHz. The application of FPGA allows the user to vary the number of real-time channel response averages, channel sampling interval, and duration of measurement. The waveform, bandwidth, and frequency resolution of the sounder can be adapted for any channel under investigation. The design approach and technology used has led to a reduction in size and weight by more than 60%. This makes the sounder ideal for mobile time-variant wireless communication channels studies. Averaging allows processing gains of up to 30 dB to be achieved for measurement in weak signal conditions. The technique applied also improves reliability, reduces power consumption, and has shifted sounder design complexity from hardware to software. Test results show that the sounder can detect very small-scale variations in channels.

  1. Acoustic sounder monitoring of windshear within the atmospheric boundary layer over Ile-Ife, Nigeria

    International Nuclear Information System (INIS)

    Adedokun, J.A.; Vaughan, O.O.

    1989-12-01

    A tri-axial acoustic sounder with doppler wind measuring capability has been used to measure boundary layer winds from which windshear fields have been evaluated over Ile-Ife |7.29N.4.34E| Nigeria between April and June, 1988. Correlation between SODAR derived windshear profile and a radiosonde-derived temperature profile is examined. Associated Richardson numbers have been used to categorize atmospheric layers into various stability types. A case study of wind fields and derived windshear zones associated with a rain event has been made. (author). 14 refs, 7 figs

  2. LASA (Lidar Atmospheric Sounder and Altimeter) Earth Observing System. Volume 2D: Instrument Panel Report

    Science.gov (United States)

    1987-01-01

    The Earth Observing System (Eos) will provide an ideal forum in which the stronly synergistic characteristics of the lidar systems can be used in concert with the characteristics of a number of other sensors to better understand the Earth as a system. Progress in the development of more efficient and long-lasting laser systems will insure their availability in the Eos time frame. The necessary remote-sensing techniques are being developed to convert the Lidar Atmospheric Sounder and Altimeter (LASA) observations into the proper scientific parameters. Each of these activities reinforces the promise that LASA and GLRS will be a reality in the Eos era.

  3. Phase Change Material for Temperature Control of Imager or Sounder on GOES Type Satellites in GEO

    Science.gov (United States)

    Choi, Michael K.

    2014-01-01

    This paper uses phase change material (PCM) in the scan cavity of an imager or sounder on satellites in geostationary orbit (GEO) to maintain the telescope temperature stable. When sunlight enters the scan aperture, solar heating causes the PCM to melt. When sunlight stops entering the scan aperture, the PCM releases the thermal energy stored to keep the components in the telescope warm. It has no moving parts or bimetallic springs. It reduces heater power required to make up the heat lost by radiation to space through the aperture. It is an attractive thermal control option to a radiator with a louver and a sunshade.

  4. Counter electrojet features in the Brazilian sector: simultaneous observation by radar, digital sounder and magnetometers

    Directory of Open Access Journals (Sweden)

    C. M. Denardini

    2009-04-01

    Full Text Available In the present work we show new results regarding equatorial counter electrojet (CEJ events in the Brazilian sector, based on the RESCO radar, two set of fluxgate magnetometer systems and a digital sounder. RESCO radar is a 50 MHz backscatter coherent radar installed in 1998 at São Luís (SLZ, 2.33° S, 44.60° W, an equatorial site. The Digital sounder routinely monitors the electron density profile at the radar site. The magnetometer systems are fluxgate-type installed at SLZ and Eusébio (EUS, 03.89° S, 38.44° W. From the difference between the horizontal component of magnetic field at SLZ station and the same component at EUS (EEJ ground strength several cases of westward morning electrojet and its normal inversion to the eastward equatorial electrojet (EEJ have been observed. Also, the EEJ ground strength has shown some cases of CEJ events, which been detected with the RESCO radar too. Detection of these events were investigated with respect to their time and height of occurrence, correlation with sporadic E (Es layers at the same time, and their spectral characteristics as well as the radar echo power intensity.

  5. Interpreting Observations of Large-Scale Traveling Ionospheric Disturbances by Ionospheric Sounders

    Science.gov (United States)

    Pederick, L. H.; Cervera, M. A.; Harris, T. J.

    2017-12-01

    From July to October 2015, the Australian Defence Science and Technology Group conducted an experiment during which a vertical incidence sounder (VIS) was set up at Alice Springs Airport. During September 2015 this VIS observed the passage of many large-scale traveling ionospheric disturbances (TIDs). By plotting the measured virtual heights across multiple frequencies as a function of time, the passage of the TID can be clearly displayed. Using this plotting method, we show that all the TIDs observed during the campaign by the VIS at Alice Springs show an apparent downward phase progression of the crests and troughs. The passage of the TID can be more clearly interpreted by plotting the true height of iso-ionic contours across multiple plasma frequencies; the true heights can be obtained by inverting each ionogram to obtain an electron density profile. These plots can be used to measure the vertical phase speed of a TID and also reveal a time lag between events seen in true height compared to virtual height. To the best of our knowledge, this style of analysis has not previously been applied to other swept-frequency sounder observations. We develop a simple model to investigate the effect of the passage of a large-scale TID on a VIS. The model confirms that for a TID with a downward vertical phase progression, the crests and troughs will appear earlier in virtual height than in true height and will have a smaller apparent speed in true height than in virtual height.

  6. A Robust Automatic Ionospheric O/X Mode Separation Technique for Vertical Incidence Sounders

    Science.gov (United States)

    Harris, T. J.; Pederick, L. H.

    2017-12-01

    The sounding of the ionosphere by a vertical incidence sounder (VIS) is the oldest and most common technique for determining the state of the ionosphere. The automatic extraction of relevant ionospheric parameters from the ionogram image, referred to as scaling, is important for the effective utilization of data from large ionospheric sounder networks. Due to the Earth's magnetic field, the ionosphere is birefringent at radio frequencies, so a VIS will typically see two distinct returns for each frequency. For the automatic scaling of ionograms, it is highly desirable to be able to separate the two modes. Defence Science and Technology Group has developed a new VIS solution which is based on direct digital receiver technology and includes an algorithm to separate the O and X modes. This algorithm can provide high-quality separation even in difficult ionospheric conditions. In this paper we describe the algorithm and demonstrate its consistency and reliability in successfully separating 99.4% of the ionograms during a 27 day experimental campaign under sometimes demanding ionospheric conditions.

  7. The JPSS CrIS Instrument and the Evolution of Space-Based Infrared Sounders

    Science.gov (United States)

    Glumb, Ronald; Suwinski, Lawrence; Wells, Steven; Glumb, Anna; Malloy, Rebecca; Colton, Marie

    2018-01-01

    This paper will summarize the development of infrared sounders since the 1970s, describe the technological hurdles that were overcome to provide ever-increasing performance capabilities, and highlight the radiometric performance of the CrIS instrument on JPSS-1 (CrIS-JPSS1). This includes details of the CrIS-JPSS1 measured noise-equivalent spectral radiance (NEdN) performance, radiometric uncertainty performance utilizing a new and improved internal calibration target, short-term and long-term repeatability, spectral uncertainty, and spectral stability. In addition, the full-resolution operating modes for CrIS-JPSS1 will be reviewed, including a discussion of how these modes will be used during on-orbit characterization tests. We will provide a brief update of CrIS-SNPP on-obit performance and the production status of the CrIS instruments for JPSS-2 through JPSS-4. Current technological challenges will also be reviewed, including how ongoing research and development is enabling improvements to future sounders. The expanding usage of infrared sounding data will also be discussed, including demonstration of value via data assimilation, the roles of the public/private sector in communicating the importance of sounding data for long-term observations, and the long road to success from research to operational data products.

  8. Assimilation of Feng-Yun-3B satellite microwave humidity sounder data over land

    Science.gov (United States)

    Chen, Keyi; Bormann, Niels; English, Stephen; Zhu, Jiang

    2018-03-01

    The ECMWF has been assimilating Feng-Yun-3B (FY-3B) satellite microwave humidity sounder (MWHS) data over ocean in an operational forecasting system since 24 September 2014. It is more difficult, however, to assimilate microwave observations over land and sea ice than over the open ocean due to higher uncertainties in land surface temperature, surface emissivity and less effective cloud screening. We compare approaches in which the emissivity is retrieved dynamically from MWHS channel 1 [150 GHz (vertical polarization)] with the use of an evolving emissivity atlas from 89 GHz observations from the MWHS onboard NOAA and EUMETSAT satellites. The assimilation of the additional data over land improves the fit of short-range forecasts to other observations, notably ATMS (Advanced Technology Microwave Sounder) humidity channels, and the forecast impacts are mainly neutral to slightly positive over the first five days. The forecast impacts are better in boreal summer and the Southern Hemisphere. These results suggest that the techniques tested allow for effective assimilation of MWHS/FY-3B data over land.

  9. Expression

    Directory of Open Access Journals (Sweden)

    Wang-Xia Wang

    2014-02-01

    Full Text Available The miR-15/107 family comprises a group of 10 paralogous microRNAs (miRNAs, sharing a 5′ AGCAGC sequence. These miRNAs have overlapping targets. In order to characterize the expression of miR-15/107 family miRNAs, we employed customized TaqMan Low-Density micro-fluid PCR-array to investigate the expression of miR-15/107 family members, and other selected miRNAs, in 11 human tissues obtained at autopsy including the cerebral cortex, frontal cortex, primary visual cortex, thalamus, heart, lung, liver, kidney, spleen, stomach and skeletal muscle. miR-103, miR-195 and miR-497 were expressed at similar levels across various tissues, whereas miR-107 is enriched in brain samples. We also examined the expression patterns of evolutionarily conserved miR-15/107 miRNAs in three distinct primary rat brain cell preparations (enriched for cortical neurons, astrocytes and microglia, respectively. In primary cultures of rat brain cells, several members of the miR-15/107 family are enriched in neurons compared to other cell types in the central nervous system (CNS. In addition to mature miRNAs, we also examined the expression of precursors (pri-miRNAs. Our data suggested a generally poor correlation between the expression of mature miRNAs and their precursors. In summary, we provide a detailed study of the tissue and cell type-specific expression profile of this highly expressed and phylogenetically conserved family of miRNA genes.

  10. ISIS Topside-Sounder Plasma-Wave Investigations as Guides to Desired Virtual Wave Observatory (VWO) Data Search Capabilities

    Science.gov (United States)

    Benson, Robert F.; Fung, Shing F.

    2008-01-01

    Many plasma-wave phenomena, observed by space-borne radio sounders, cannot be properly explained in terms of wave propagation in a cold plasma consisting of mobile electrons and infinitely massive positive ions. These phenomena include signals known as plasma resonances. The principal resonances at the harmonics of the electron cyclotron frequency, the plasma frequency, and the upper-hybrid frequency are well explained by the warm-plasma propagation of sounder-generated electrostatic waves, Other resonances have been attributed to sounder-stimulated plasma instability and non-linear effects, eigenmodes of cylindrical electromagnetic plasma oscillations, and plasma memory processes. Data from the topside sounders of the International Satellites for Ionospheric Studies (ISIS) program played a major role in these interpretations. A data transformation and preservation effort at the Goddard Space Flight Center has produced digital ISIS topside ionograms and a metadata search program that has enabled some recent discoveries pertaining to the physics of these plasma resonances. For example, data records were obtained that enabled the long-standing question (several decades) of the origin of the plasma resonance at the fundamental electron cyclotron frequency to be explained [Muldrew, Radio Sci., 2006]. These data-search capabilities, and the science enabled by them, will be presented as a guide to desired data search capabilities to be included in the Virtual Wave Observatory (VWO).

  11. The CubeSat Infrared Atmospheric Sounder (CIRAS): Demonstrating key technologies for a future constellation to improve temporal sampling

    Science.gov (United States)

    Pagano, T. S.

    2016-12-01

    Hyperspectral infrared sounding of the atmosphere has become a vital element in the observational system for weather forecast prediction at National Weather Prediction (NWP) centers worldwide. The NASA Atmospheric Infrared Sounder (AIRS) instrument was the pathfinder for the hyperspectral infrared observations and was designed to provide accurate atmospheric temperature and water vapor profile information in support of weather prediction. AIRS was launched in 2002 and continues to operate well. The Cross-track Infrared Sounder (CrIS) on the Suomi NPP satellite was launched in 2011 to continue the AIRS measurement record. CrIS also continues to operate well and additional sensors are planned for launch promising to continue the hyperspectral infrared measurements in support of NWP into the late 2030's. The high cost of IR sounders makes it costly to launch them into multiple orbits to improve temporal sampling, or into GEO, although EUMETSAT is planning a GEO IR Sounder to launch in the early 2020's. JPL NASA is offering an alternate hyperspectral IR sounder architecture for the future involving CubeSats. The latest technology in large format focal plane assemblies, wide field optics and active cryocoolers enables a reduction in size, mass and cost of the legacy sounders and offer new configurations. Lessons learned from AIRS and CrIS indicate that temperature and water vapor sounding in the lower troposphere can be achieved with only the MWIR portion of the spectrum. The CubeSat Infrared Atmospheric Sounder (CIRAS) employs only an MWIR spectrometer to achieve lower tropospheric temperature and water vapor profiles, but with comparable spatial, spectral and radiometric sensitivity in this band as AIRS and CrIS. CIRAS operates from 4.08-5.13 µm with 625 channels and spectral resolution of 1.2-2.0 cm-1. CIRAS employs an immersion grating spectrometer making the optics incredibly compact, and HOT-BIRD detectors enabling good uniformity and operability over the large

  12. Preliminary Regional Analysis of the Kaguya Lunar Radar Sounder (LRS) Data through Eastern Mare Imbrium

    Science.gov (United States)

    Cooper, B.L.; Antonenko, I.; Yamaguchi, Y.; Osinski, G.; Ono, T.; Ku-mamoto, A.

    2009-01-01

    The Lunar Radar Sounder (LRS) experiment on board the Kaguya spacecraft is observing the subsurface structure of the Moon, using ground-penetrating radar operating in the frequency range of 5 MHz [1]. Because LRS data provides in-formation about lunar features below the surface, it allows us to improve our understanding of the processes that formed the Moon, and the post-formation changes that have occurred (such as basin formation and volcanism). We look at a swath of preliminary LRS data, that spans from 7 to 72 N, and from 2 to 10 W, passing through the eastern portion of Mare Imbrium (Figure 1). Using software, designed for the mineral exploration industry, we produce a preliminary, coarse 3D model, showing the regional structure beneath the study area. Future research will involve smaller subsets of the data in regions of interest, where finer structures, such as those identified in [2], can be studied.

  13. The Impact of Upper Tropospheric Humidity from Microwave Limb Sounder on the Midlatitude Greenhouse Effect

    Science.gov (United States)

    Hu, Hua; Liu, W. Timothy

    1998-01-01

    This paper presents an analysis of upper tropospheric humidity, as measured by the Microwave Limb Sounder, and the impact of the humidity on the greenhouse effect in the midlatitudes. Enhanced upper tropospheric humidity and an enhanced greenhouse effect occur over the storm tracks in the North Pacific and North Atlantic. In these areas, strong baroclinic activity and the large number of deep convective clouds transport more water vapor to the upper troposphere, and hence increase greenhouse trapping. The greenhouse effect increases with upper tropospheric humidity in areas with a moist upper troposphere (such as areas over storm tracks), but it is not sensitive to changes in upper tropospheric humidity in regions with a dry upper troposphere, clearly demonstrating that there are different mechanisms controlling the geographical distribution of the greenhouse effect in the midlatitudes.

  14. ESA'S POLarimetric Airborne Radar Ice Sounder (POLARIS): design and first results

    DEFF Research Database (Denmark)

    Dall, Jørgen; Kristensen, Steen Savstrup; Krozer, Viktor

    2010-01-01

    -of-concept campaign was conducted in Greenland. This study outlines the design and implementation of the system, and based on first results it is concluded that in the central dry snow zone of Greenland, POLARIS can resolve shallow and deep internal ice layers, penetrate the thickest ice encountered and detect......The Technical University of Denmark has developed and tested a P-band ice sounding radar for European Space Agency (ESA). With the recent by the International Telecommunication Union (ITU) allocation of a radar band at 435 MHz, increased interest in space-based sounding of the Earth s ice caps has...... been encountered. ESA s POLarimetric Airborne Radar Ice Sounder (POLARIS) is intended to provide a better understanding of P-band scattering and propagation through ice sheets and to verify novel surface clutter suppression techniques in preparation for a potential space-based ice sounding mission...

  15. Characteristics of monsoon inversions over the Arabian Sea observed by satellite sounder and reanalysis data sets

    Directory of Open Access Journals (Sweden)

    S. Dwivedi

    2016-04-01

    Full Text Available Monsoon inversion (MI over the Arabian Sea (AS is one of the important characteristics associated with the monsoon activity over Indian region during summer monsoon season. In the present study, we have used 5 years (2009–2013 of temperature and water vapour measurement data obtained from satellite sounder instrument, an Infrared Atmospheric Sounding Interferometer (IASI onboard MetOp satellite, in addition to ERA-Interim data, to study their characteristics. The lower atmospheric data over the AS have been examined first to identify the areas where MIs are predominant and occur with higher strength. Based on this information, a detailed study has been made to investigate their characteristics separately in the eastern AS (EAS and western AS (WAS to examine their contrasting features. The initiation and dissipation times of MIs, their percentage occurrence, strength, etc., has been examined using the huge database. The relation with monsoon activity (rainfall over Indian region during normal and poor monsoon years is also studied. WAS ΔT values are  ∼  2 K less than those over the EAS, ΔT being the temperature difference between 950 and 850 hPa. A much larger contrast between the WAS and EAS in ΔT is noticed in ERA-Interim data set vis-à-vis those observed by satellites. The possibility of detecting MI from another parameter, refractivity N, obtained directly from another satellite constellation of GPS Radio Occultation (RO (COSMIC, has also been examined. MI detected from IASI and Atmospheric Infrared Sounder (AIRS onboard the NOAA satellite have been compared to see how far the two data sets can be combined to study the MI characteristics. We suggest MI could also be included as one of the semipermanent features of southwest monsoon along with the presently accepted six parameters.

  16. Automatic detection of subglacial lakes in radar sounder data acquired in Antarctica

    Science.gov (United States)

    Ilisei, Ana-Maria; Khodadadzadeh, Mahdi; Dalsasso, Emanuele; Bruzzone, Lorenzo

    2017-10-01

    Subglacial lakes decouple the ice sheet from the underlying bedrock, thus facilitating the sliding of the ice masses towards the borders of the continents, consequently raising the sea level. This motivated increasing attention in the detection of subglacial lakes. So far, about 70% of the total number of subglacial lakes in Antarctica have been detected by analysing radargrams acquired by radar sounder (RS) instruments. Although the amount of radargrams is expected to drastically increase, from both airborne and possible future Earth observation RS missions, currently the main approach to the detection of subglacial lakes in radargrams is by visual interpretation. This approach is subjective and extremely time consuming, thus difficult to apply to a large amount of radargrams. In order to address the limitations of the visual interpretation and to assist glaciologists in better understanding the relationship between the subglacial environment and the climate system, in this paper, we propose a technique for the automatic detection of subglacial lakes. The main contribution of the proposed technique is the extraction of features for discriminating between lake and non-lake basal interfaces. In particular, we propose the extraction of features that locally capture the topography of the basal interface, the shape and the correlation of the basal waveforms. Then, the extracted features are given as input to a supervised binary classifier based on Support Vector Machine to perform the automatic subglacial lake detection. The effectiveness of the proposed method is proven both quantitatively and qualitatively by applying it to a large dataset acquired in East Antarctica by the MultiChannel Coherent Radar Depth Sounder.

  17. Carbon Monoxide Distribution over Peninsular Malaysia from the Atmospheric Infrared Sounder (AIRS)

    Science.gov (United States)

    Rajab, Jaso M.; MatJafri, M. Z.; Lim, H. S.; Abdullah, K.

    2009-07-01

    The Atmospheric Infrared Sounder (AIRS) onboard NASA's Aqua satellite. It daily coverage of ˜70% of the planet represents a significant evolutionary advance in satellite traces gas remote sensing. AIRS, the part of a large international investment to upgrade the operational meteorological satellite systems, is first of the new generation of meteorological advanced sounders for operational and research use, Providing New Insights into Weather and Climate for the 21st Century. Carbon monoxide (CO) is a ubiquitous, an indoor and outdoor air pollutant, is not a significant greenhouse gas as it absorbs little infrared radiation from the Earth. However, it does have an influence on oxidization in the atmosphere through interaction with hydroxyl radicals (OH), which also react with methane, halocarbons and tropospheric ozone. It produced by the incomplete combustion of fossil fuels and biomass burning, and that it has a role as a smog. The aim of this investigation is to study the (CO) carbon monoxide distribution over Peninsular Malaysia. The land use map of the Peninsular Malaysia was conducted by using CO total column amount, obtained from AIRS data, the map & data was processed and analyzed by using Photoshop & SigmaPlot 11.0 programs and compared for timing of various (day time) (28 August 2005 & 29 August 2007) for both direct comparison and the comparison using the same a priori profile, the CO concentrations in 28/8/2005 higher. The CO maps were generated using Kriging Interpolation technique. This interpolation technique produced high correlation coefficient, R2 and low root mean square error, RMS for CO. This study provided useful information for influence change of CO concentration on varies temperature.

  18. Automatic identification of non-reflective subsurface targets in radar sounder data based on morphological profile

    Science.gov (United States)

    Khodadadzadeh, Mahdi; Ilisei, Ana-Maria; Bruzzone, Lorenzo

    2017-10-01

    The amount of radar sounder data, which are used to analyze the subsurface of icy environments (e.g., Poles of Earth and Mars), is dramatically increasing from both airborne campaigns at the ice sheets and satellite missions on other planetary bodies. However, the main approach to the investigation of such data is by visual interpretation, which is subjective and time consuming. Moreover, the few available automatic techniques have been developed for analyzing highly reflective subsurface targets, e.g., ice layers, basal interface. Besides the high reflective targets, glaciologists have also shown great interest in the analysis of non-reflective targets, such as the echo-free zone in ice sheets, and the reflective free zone in the subsurface of the South Pole of Mars. However, in the literature, there is no dedicated automatic technique for the analysis of non-reflective targets. To address this limitation, we propose an automatic classification technique for the identification of non-reflective targets in radar sounder data. The method is made up of two steps, i.e., i) feature extraction, which is the core of the method, and ii) automatic classification of subsurface targets. We initially prove that the commonly employed features for the analysis of the radar signal (e.g., statistical and texture based features) are ineffective for the identification of non-reflective targets. Thus, for feature extraction, we propose to exploit structural information based on the morphological closing profile. We show the effectiveness of such features in discriminating of non-reflective target from the other ice subsurface targets. In the second step, a random forest classifier is used to perform the automatic classification. Our experimental results, conducted using two data sets from Central Antarctica and South Pole of Mars, point out the effectiveness of the proposed technique for the accurate identification of non-reflective targets.

  19. Improved Impact of Atmospheric Infrared Sounder (AIRS) Radiance Assimilation in Numerical Weather Prediction

    Science.gov (United States)

    Zavodsky, Bradley; Chou, Shih-Hung; Jedlovec, Gary

    2012-01-01

    Improvements to global and regional numerical weather prediction (NWP) have been demonstrated through assimilation of data from NASA s Atmospheric Infrared Sounder (AIRS). Current operational data assimilation systems use AIRS radiances, but impact on regional forecasts has been much smaller than for global forecasts. Retrieved profiles from AIRS contain much of the information that is contained in the radiances and may be able to reveal reasons for this reduced impact. Assimilating AIRS retrieved profiles in an identical analysis configuration to the radiances, tracking the quantity and quality of the assimilated data in each technique, and examining analysis increments and forecast impact from each data type can yield clues as to the reasons for the reduced impact. By doing this with regional scale models individual synoptic features (and the impact of AIRS on these features) can be more easily tracked. This project examines the assimilation of hyperspectral sounder data used in operational numerical weather prediction by comparing operational techniques used for AIRS radiances and research techniques used for AIRS retrieved profiles. Parallel versions of a configuration of the Weather Research and Forecasting (WRF) model with Gridpoint Statistical Interpolation (GSI) that mimics the analysis methodology, domain, and observational datasets for the regional North American Mesoscale (NAM) model run at the National Centers for Environmental Prediction (NCEP)/Environmental Modeling Center (EMC) are run to examine the impact of each type of AIRS data set. The first configuration will assimilate the AIRS radiance data along with other conventional and satellite data using techniques implemented within the operational system; the second configuration will assimilate AIRS retrieved profiles instead of AIRS radiances in the same manner. Preliminary results of this study will be presented and focus on the analysis impact of the radiances and profiles for selected cases.

  20. A global climatology of stratospheric gravity waves from Atmospheric Infrared Sounder observations

    Science.gov (United States)

    Hoffmann, Lars; Xue, Xianghui; Alexander, M. Joan

    2014-05-01

    We present the results of a new study that aims on the detection and classification of `hotspots' of stratospheric gravity waves on a global scale. The analysis is based on a nine-year record (2003 to 2011) of radiance measurements by the Atmospheric Infrared Sounder (AIRS) aboard NASA's Aqua satellite. We detect the presence of stratospheric gravity waves based on 4.3 micron brightness temperature variances. Our method is optimized for peak events, i.e., strong gravity wave events for which the local variance considerably exceeds background levels. We estimated the occurrence frequencies of these peak events for different seasons and time of day and used the results to find local maxima of gravity wave activity. In addition, we use AIRS radiances at 8.1 micron to simultaneously detect convective events, including deep convection in the tropics and mesoscale convective systems at mid latitudes. We classified the gravity waves according to their sources, based on seasonal occurrence frequencies for convection and by means of topographic data. Our study reproduces well-known hotspots of gravity waves, e.g., the mountain wave hotspots at the Andes and the Antarctic Peninsula or the convective hotspot during the thunderstorm season over the North American Great Plains. However, the high horizontal resolution of the AIRS observations also helped us to locate several smaller hotspots, which were partly unknown or poorly studied so far. Most of these smaller hotspots are found near orographic features like small mountain ranges, in coastal regions, in desert areas, or near isolated islands. This new study will help to select the most promising regions and seasons for future observational studies of gravity waves. Reference: Hoffmann, L., X. Xue, and M. J. Alexander, A global view of stratospheric gravity wave hotspots located with Atmospheric Infrared Sounder observations, J. Geophys. Res., 118, 416-434, doi:10.1029/2012JD018658, 2013.

  1. NOAA Climate Data Record (CDR) of Intersatellite Calibrated Clear-Sky High Resolution Infrared Radiation Sounder (HIRS) Channel 12 Brightness Temperature Version 3

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The High-Resolution Infrared Radiation Sounder (HIRS) of intersatellite calibrated channel 12 brightness temperature (TB) product is a gridded global monthly time...

  2. Sounder PEATE SNPP CrIMSS IR MW Retrieval Level 3 Daily Observations 1 degree x 1 degree V10 (SPL3NP2D) at GES DISC

    Data.gov (United States)

    National Aeronautics and Space Administration — The Sounder PEATE Level 3 Product provides global cylindrical grids summarizing Level-2 data from a given instrument suite for one day, 8-consecutive days, or one...

  3. Sound velocity from inverted echo sounders (IES) in the western Pacific Ocean from 1992-08-26 to 1993-03-22 (NODC Accession 9300159)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This accession contains inverted echo sounder data collected from two stations in the western Pacific, TPW nominally @ 2S and 154E and TPE nominally @ 2S and 164E....

  4. Hyperspectral Microwave Atmospheric Sounder (HyMAS) architecture and design accommodations

    Science.gov (United States)

    Hilliard, L.; Racette, P.; Blackwell, W.; Galbraith, C.; Thompson, E.

    The Hyperspectral Microwave Atmospheric Sounder (HyMAS) is being developed at Lincoln Laboratories and accommodated by the Goddard Space Flight Center for a flight opportunity on a NASA research aircraft. The term “ hyperspectral microwave” is used to indicate an all-weather sounding that performs equivalent to hyperspectral infrared sounders in clear air with vertical resolution of approximately 1 km. Deploying the HyMAS equipped scanhead with the existing Conical Scanning Microwave Imaging Radiometer (CoSMIR) shortens the path to a flight demonstration. Hyperspectral microwave is achieved through the use of independent RF antennas that sample the volume of the Earth's atmosphere through various levels of frequencies, thereby producing a set of dense, spaced vertical weighting functions. The simulations proposed for HyMAS 118/183-GHz system should yield surface precipitation rate and water path retrievals for small hail, soft hail, or snow pellets, snow, rainwater, etc. with accuracies comparable to those of the Advanced Technology Microwave Sounder. Further improvements in retrieval methodology (for example, polarization exploitation) are expected. The CoSMIR instrument is a packaging concept re-used on HyMAS to ease the integration features of the scanhead. The HyMAS scanhead will include an ultra-compact Intermediate Frequency Processor (IFP) module that is mounted inside the door to improve thermal management. The IFP is fabricated with materials made of Low-Temperature Co-fired Ceramic (LTCC) technology integrated with detectors, amplifiers, A/D conversion and data aggregation. The IFP will put out 52 channels of 16 bit data comprised of 4 - 9 channel data streams for temperature profiles and 2-8 channel streams for water vapor. With the limited volume of the existing CoSMIR scanhead and new HyMAS front end components, the HyMAS team at Goddard began preliminary layout work inside the new drum. Importing and re-using models of the shell, the s- an head

  5. Airborne Deployment and Calibration of Microwave Atmospheric Sounder on 6U CubeSat

    Science.gov (United States)

    Padmanabhan, S.; Brown, S. T.; Lim, B.; Kangaslahti, P.; Russell, D.; Stachnik, R. A.

    2015-12-01

    To accurately predict how the distribution of extreme events may change in the future we need to understand the mechanisms that influence such events in our current climate. Our current observing system is not well-suited for observing extreme events globally due to the sparse sampling and in-homogeneity of ground-based in-situ observations and the infrequent revisit time of satellite observations. Observations of weather extremes, such as extreme precipitation events, temperature extremes, tropical and extra-tropical cyclones among others, with temporal resolution on the order of minutes and spatial resolution on the order of few kms (CubeSats that would work in concert with traditional flagship observational systems, such as those manifested on large environmental satellites (i.e. JPSS,WSF,GCOM-W), to monitor weather extremes. A 118/183 GHz sensor would enable observations of temperature and precipitation extremes over land and ocean as well as tropical and extra-tropical cyclones. This proposed project would enable low cost, compact radiometer instrumentation at 118 and 183 GHz that would fit in a 6U Cubesat with the objective of mass-producing this design to enable a suite of small satellites to image the key geophysical parameters needed to improve prediction of extreme weather events. We take advantage of past and current technology developments at JPL viz. HAMSR (High Altitude Microwave Scanning Radiometer), Advanced Component Technology (ACT'08) to enable low-mass, low-power high frequency airborne radiometers. In this paper, we will describe the design and implementation of the 118 GHz temperature sounder and 183 GHz humidity sounder on the 6U CubeSat. In addition, we will discuss the maiden airborne deployment of the instrument during the Plain Elevated Convection at Night (PECAN) experiment. The successful demonstration of this instrument on the 6U CubeSat would pave the way for the development of a constellation which could sample tropospheric

  6. Satellite Sounder Observations of Contrasting Tropospheric Moisture Transport Regimes: Saharan Air Layers, Hadley Cells, and Atmospheric Rivers

    Energy Technology Data Exchange (ETDEWEB)

    Nalli, Nicholas R.; Barnet, Christopher D.; Reale, Tony; Liu, Quanhua; Morris, Vernon R.; Spackman, J. Ryan; Joseph, Everette; Tan, Changyi; Sun, Bomin; Tilley, Frank; Leung, L. Ruby; Wolfe, Daniel

    2016-12-01

    This paper examines the performance of satellite sounder atmospheric vertical moisture proles (AVMP) under tropospheric conditions encompassing moisture contrasts driven by convection and advection transport mechanisms, specifically Atlantic Ocean Saharan air layers (SALs) and Pacific Ocean moisture conveyer belts (MCBs) commonly referred to as atmospheric rivers (ARs), both of these being mesoscale to synoptic meteorological phenomena within the vicinity of subtropical Hadley subsidence zones. Operational AVMP environmental data records retrieved from the Suomi National Polar-orbiting Partnership (SNPP) NOAA-Unique Combined Atmospheric Processing System (NUCAPS) are collocated with dedicated radiosonde observations (RAOBs) obtained from ocean-based intensive field campaigns; these RAOBs provide uniquely independent correlative truth data not assimilated into numerical weather prediction models for satellite sounder validation over open ocean. Using these marine-based data, we empirically assess the performance of the operational NUCAPS AVMP product for detecting and resolving these tropospheric moisture features over otherwise RAOB-sparse regions.

  7. The CubeSat Infrared Atmospheric Sounder (CIRAS), Pathfinder for the Earth Observing Nanosatellite-Infrared (EON-IR)

    OpenAIRE

    Pagano, Thomas S.; Rider, David; Teixeira, Joao; Aumann, Hartmut; Rud, Mayer; Pereira, John; Furlong, David; Mamula, Dan

    2016-01-01

    The CubeSat Infrared Atmospheric Sounder (CIRAS) will measure upwelling infrared radiation of the Earth in the Midwave Infrared (MWIR) region of the spectrum from space on a CubeSat. CIRAS will demonstrate two new infrared sounding technologies. The first is a 2D array of High Operating Temperature Barrier Infrared Detector (HOT-BIRD) material, selected for its high uniformity, low cost, low noise and higher operating temperatures than traditional materials. The detectors are hybridized to a ...

  8. A multi-frequency radar sounder for lava tubes detection on the Moon: Design, performance assessment and simulations

    Science.gov (United States)

    Carrer, Leonardo; Gerekos, Christopher; Bruzzone, Lorenzo

    2018-03-01

    Lunar lava tubes have attracted special interest as they would be suitable shelters for future human outposts on the Moon. Recent experimental results from optical images and gravitational anomalies have brought strong evidence of their existence, but such investigative means have very limited potential for global mapping of lava tubes. In this paper, we investigate the design requirement and feasibility of a radar sounder system specifically conceived for detecting subsurface Moon lava tubes from orbit. This is done by conducting a complete performance assessment and by simulating the electromagnetic signatures of lava tubes using a coherent 3D simulator. The results show that radar sounding of lava tubes is feasible with good performance margins in terms of signal-to-noise and signal-to-clutter ratio, and that a dual-frequency radar sounder would be able to detect the majority of lunar lava tubes based on their potential dimension with some limitations for very small lava tubes having width smaller than 250 m. The electromagnetic simulations show that lava tubes display an unique signature characterized by a signal phase inversion on the roof echo. The analysis is provided for different acquisition geometries with respect to the position of the sounded lava tube. This analysis confirms that orbiting multi-frequency radar sounder can detect and map in a reliable and unambiguous way the majority of Moon lava tubes.

  9. Sensor System Performance Evaluation and Benefits from the NPOESS Airborne Sounder Testbed-Interferometer (NAST-I)

    Science.gov (United States)

    Larar, A.; Zhou, D.; Smith, W.

    2009-01-01

    Advanced satellite sensors are tasked with improving global-scale measurements of the Earth's atmosphere, clouds, and surface to enable enhancements in weather prediction, climate monitoring, and environmental change detection. Validation of the entire measurement system is crucial to achieving this goal and thus maximizing research and operational utility of resultant data. Field campaigns employing satellite under-flights with well-calibrated FTS sensors aboard high-altitude aircraft are an essential part of this validation task. The National Polar-orbiting Operational Environmental Satellite System (NPOESS) Airborne Sounder Testbed-Interferometer (NAST-I) has been a fundamental contributor in this area by providing coincident high spectral/spatial resolution observations of infrared spectral radiances along with independently-retrieved geophysical products for comparison with like products from satellite sensors being validated. This paper focuses on some of the challenges associated with validating advanced atmospheric sounders and the benefits obtained from employing airborne interferometers such as the NAST-I. Select results from underflights of the Aqua Atmospheric InfraRed Sounder (AIRS) and the Infrared Atmospheric Sounding Interferometer (IASI) obtained during recent field campaigns will be presented.

  10. User expectations for multibeam echo sounders backscatter strength data-looking back into the future

    Science.gov (United States)

    Lucieer, Vanessa; Roche, Marc; Degrendele, Koen; Malik, Mashkoor; Dolan, Margaret; Lamarche, Geoffroy

    2017-05-01

    With the ability of multibeam echo sounders (MBES) to measure backscatter strength (BS) as a function of true angle of insonification across the seafloor, came a new recognition of the potential of backscatter measurements to remotely characterize the properties of the seafloor. Advances in transducer design, digital electronics, signal processing capabilities, navigation, and graphic display devices, have improved the resolution and particularly the dynamic range available to sonar and processing software manufacturers. Alongside these improvements the expectations of what the data can deliver has also grown. In this paper, we identify these user-expectations and explore how MBES backscatter is utilized by different communities involved in marine seabed research at present, and the aspirations that these communities have for the data in the future. The results presented here are based on a user survey conducted by the GeoHab (Marine Geological and Biological Habitat Mapping) association. This paper summarises the different processing procedures employed to extract useful information from MBES backscatter data and the various intentions for which the user community collect the data. We show how a range of backscatter output products are generated from the different processing procedures, and how these results are taken up by different scientific disciplines, and also identify common constraints in handling MBES BS data. Finally, we outline our expectations for the future of this unique and important data source for seafloor mapping and characterisation.

  11. The Transition of Atmospheric Infrared Sounder Total Ozone Products to Operations

    Science.gov (United States)

    Berndt, Emily; Zavodsky, Bradley; Jedlovec, Gary

    2014-01-01

    The National Aeronautics and Space Administration Short-term Prediction Research and Transition Center (NASA SPoRT) has transitioned a total column ozone product from the Atmospheric Infrared Sounder (AIRS) retrievals to the Weather Prediction Center and Ocean Prediction Center. The total column ozone product is used to diagnose regions of warm, dry, ozone-rich, stratospheric air capable of descending to the surface to create high-impact non-convective winds. Over the past year, forecasters have analyzed the Red, Green, Blue (RGB) Air Mass imagery in conjunction with the AIRS total column ozone to aid high wind forecasts. One of the limitations of the total ozone product is that it is difficult for forecasters to determine whether elevated ozone concentrations are related to stratospheric air or climatologically high values of ozone in certain regions. During the summer of 2013, SPoRT created an AIRS ozone anomaly product which calculates the percent of normal ozone based on a global stratospheric ozone mean climatology. With the knowledge that ozone values 125 percent of normal and greater typically represent stratospheric air; the anomaly product can be used with the total column ozone product to confirm regions of stratospheric air. This paper describes the generation of these products along with forecaster feedback concerning the use of the AIRS ozone products in conjunction with the RGB Air Mass product to access the utility and transition of the products.

  12. Improving Regional Forecast by Assimilating Atmospheric InfraRed Sounder (AIRS) Profiles into WRF Model

    Science.gov (United States)

    Chou, Shih-Hung; Zavodsky, Brad; Jedlovec, Gary J.

    2009-01-01

    In data sparse regions, remotely-sensed observations can be used to improve analyses and produce improved forecasts. One such source comes from the Atmospheric InfraRed Sounder (AIRS), which together with the Advanced Microwave Sounding Unit (AMSU), represents one of the most advanced space-based atmospheric sounding systems. The purpose of this paper is to describe a procedure to optimally assimilate high resolution AIRS profile data into a regional configuration of the Advanced Research WRF (ARW) version 2.2 using WRF-Var. The paper focuses on development of background error covariances for the regional domain and background type, and an optimal methodology for ingesting AIRS temperature and moisture profiles as separate overland and overwater retrievals with different error characteristics. The AIRS thermodynamic profiles are derived from the version 5.0 Earth Observing System (EOS) science team retrieval algorithm and contain information about the quality of each temperature layer. The quality indicators were used to select the highest quality temperature and moisture data for each profile location and pressure level. The analyses were then used to conduct a month-long series of regional forecasts over the continental U.S. The long-term impacts of AIRS profiles on forecast were assessed against verifying NAM analyses and stage IV precipitation data.

  13. Some results of analysis of inverted echo-sounder records from the Atlantic Equatorial region

    Directory of Open Access Journals (Sweden)

    Alberto dos Santos Franco

    1985-01-01

    Full Text Available The tidal analysis of data from the Equatorial region, given by inverted echo-sounders, show considerable residuals in the frequency band of approximately 2 cycles per day. In the even harmonics of 4 and 6 cycles per day, tidal components statistically not negligible are also identified. Spectral analysis of temperature series from the same area show, on the other hand, variabilities in the same frequency bands, which suggests the occurrence of internal waves with energy distributed in these frequency bands, in the Atlantic Equatorial area.Análises de dados de maré, da zona equatorial, obtidos com ecobatímetros invertidos, mostram consideráveis resíduos na faixa de freqüências com aproximadamente dois ciclos por dia. Nos harmônicos pares com 4 e 6 ciclos por dia são também identificadas componentes de maré estatisticamente não desprezíveis. Análises espectrais de séries de temperatura obtidas na mesma área mostram, 218 por outro lado, variabilidades na mesma faixa de freqüências, o que sugere a ocorrência, na área equatorial Atlântica, de ondas internas com energia distribuída nessas faixas espectrais.

  14. Decline in Antarctic Ozone Depletion and Lower Stratospheric Chlorine Determined From Aura Microwave Limb Sounder Observations

    Science.gov (United States)

    Strahan, Susan E.; Douglass, Anne R.

    2018-01-01

    Attribution of Antarctic ozone recovery to the Montreal protocol requires evidence that (1) Antarctic chlorine levels are declining and (2) there is a reduction in ozone depletion in response to a chlorine decline. We use Aura Microwave Limb Sounder measurements of O3, HCl, and N2O to demonstrate that inorganic chlorine (Cly) from 2013 to 2016 was 223 ± 93 parts per trillion lower in the Antarctic lower stratosphere than from 2004 to 2007 and that column ozone depletion declined in response. The mean Cly decline rate, 0.8%/yr, agrees with the expected rate based on chlorofluorocarbon lifetimes. N2O measurements are crucial for identifying changes in stratospheric Cly loading independent of dynamical variability. From 2005 to 2016, the ozone depletion and Cly time series show matching periods of decline, stability, and increase. The observed sensitivity of O3 depletion to changing Cly agrees with the sensitivity simulated by the Global Modeling Initiative chemistry transport model integrated with Modern Era Retrospective Analysis for Research and Applications 2 meteorology.

  15. Design and Implementation of a Mechanical Control System for the Scanning Microwave Limb Sounder

    Science.gov (United States)

    Bowden, William

    2011-01-01

    The Scanning Microwave Limb Sounder (SMLS) will use technological improvements in low noise mixers to provide precise data on the Earth's atmospheric composition with high spatial resolution. This project focuses on the design and implementation of a real time control system needed for airborne engineering tests of the SMLS. The system must coordinate the actuation of optical components using four motors with encoder readback, while collecting synchronized telemetric data from a GPS receiver and 3-axis gyrometric system. A graphical user interface for testing the control system was also designed using Python. Although the system could have been implemented with a FPGA-based setup, we chose to use a low cost processor development kit manufactured by XMOS. The XMOS architecture allows parallel execution of multiple tasks on separate threads-making it ideal for this application and is easily programmed using XC (a subset of C). The necessary communication interfaces were implemented in software, including Ethernet, with significant cost and time reduction compared to an FPGA-based approach. For these reasons, the XMOS technology is an attractive, cost effective, alternative to FPGA-based technologies for this design and similar rapid prototyping projects.

  16. Monitoring of atmospheric composition using the thermal infrared IASI/MetOp sounder

    Directory of Open Access Journals (Sweden)

    C. Clerbaux

    2009-08-01

    Full Text Available Atmospheric remote sounding from satellites is an essential component of the observational strategy deployed to monitor atmospheric pollution and changing composition. The IASI nadir looking thermal infrared sounder onboard MetOp will provide 15 years of global scale observations for a series of key atmospheric species, with unprecedented spatial sampling and coverage. This paper gives an overview of the instrument's capability for measuring atmospheric composition in the perspective of chemistry and air quality. The assessment is made in terms of species, accuracy and vertical information. Global distributions are presented for CO, CH4, O3 (total and tropospheric, HNO3, NH3, and volcanic SO2. Local distributions of organic species measured during fire events, such as C2H4, CH3OH, HCOOH, and PAN are also shown. For each species or process, the link is made to specialized papers in this issue.

  17. Passive A-band Wind Sounder (PAWS) for measuring tropospheric wind velocity profile

    Science.gov (United States)

    Miecznik, Grzegorz; Pierce, Robert; Huang, Pei; Slaymaker, Philip A.; Kaptchen, Paul; Roark, Shane; Johnson, Brian R.; Heath, Donald F.

    2007-09-01

    The Passive A-Band Wind Sounder (PAWS) was funded through NASA's Instrument Incubator Program (IIP) to determine the feasibility of measuring tropospheric wind speed profiles from Doppler shifts in absorption O II A-band. It is being pursued as a low-cost and low-risk alternative capable of providing better wind data than is currently available. The instrument concept is adapted from the Wind Imaging Interferometer (WINDII) sensor on the Upper Atmosphere Research Satellite. The operational concept for PAWS is to view an atmospheric limb over an altitude range from the surface to 20 km with a Doppler interferometer in a sun-synchronous low-earth orbit. Two orthogonal views of the same sampling volume will be used to resolve horizontal winds from measured line-of-sight winds. A breadboard instrument was developed to demonstrate the measurement approach and to optimize the design parameters for the subsequent engineering unit and future flight sensor. The breadboard instrument consists of a telescope, collimator, filter assembly, and Michelson interferometer. The instrument design is guided by a retrieval model, which helps to optimize key parameters, spectral filter and optical path difference in particular.

  18. Dedicated Low Latitude Diurnal CO2 Frost Observation Campaigns by the Mars Climate Sounder

    Science.gov (United States)

    Piqueux, S.; Kass, D. M.; Kleinboehl, A.; Hayne, P. O.; Heavens, N. G.; McCleese, D. J.; Schofield, J. T.; Shirley, J. H.

    2017-12-01

    In December 2016 (Ls≈280, MY33) and July 2017 (Ls≈30, MY34), the Mars Climate Sounder (MCS) onboard the Mars Reconnaissance Orbiter (MRO) conducted two distinct observation campaigns. The first one aimed at 1) confirming the presence of low latitude diurnal CO2 frost on Mars, and 2) refining the estimated mass of carbon dioxide condensed at the surface, whereas the second campaign was designed to 3) search for temporally and spatially varying spectral characteristics indicative of frost properties (i.e., crystal size, contamination, etc.) and relationship to the regolith. To meet these goals, MCS acquired thermal infrared observations of the surface and atmosphere at variable local times (≈1.70-3.80 h Local True Solar Time) and in the 10°-50°N latitude band where very low thermal inertia material (<< 100 Jm-2K-1s-0.5) is present. Atmospherically corrected surface brightness temperatures were retrieved in a wavelength region around 32 μm (MCS channel B1) as well as at 12 μm, 16 μm and 22 μm (MCS channels A4, A1, A5) where possible. A preliminary analysis of the data suggests a good general agreement between these new observations and earlier predictions in terms of frost distribution and spectral properties. In addition, pre-frost deposition surface cooling rates are found to be consistent with those predicted by numerical models (i.e., 1-2K per hour). Finally, we observe buffered surface temperatures near the local frost point, indicating a surface emissivity ≈1. (i.e., optically thin frost layers, or dust contaminated frost, or slab-like ice) and no discernable frost metamorphism. We will present a detailed analysis of these new and unique observations, and elaborate on the potential relationship between the regolith and this recurring frost cycle.

  19. The Magnetic INduction Ocean Sounder (MINOS) Concept Mission: Exploring Small Ocean Worlds With Nanosatellites

    Science.gov (United States)

    Steuer, C. J.

    2016-12-01

    Nanosatellite capabilities continue to steadily increase, showcasing ongoing advancement in key systems including GNC, communications, and power utilization. With focused high impact payloads, these small spacecraft can produce extraordinarily valuable planetary science datasets previously only retrievable by large, expensive, flagship science missions. The new capabilities provided by these nano-class spacecraft, in conjunction with, or even in lieu of, more traditional large monolithic spacecraft, can clear the way for a paradigm shift in the logistics and architecture of planetary science missions. Key near term targets for this technology are the icy moons of the outer solar system where advances in propulsion technology coupled with the low mass of nanosatellites and the shallow gravity wells of the moons allow for orbital capture. As part of a JPL funded study, the authors investigated the feasibility of placing a nanosatellite with magnetometer payload in Europa orbit to enhance and compliment the upcoming flagship mission to Europa through multi-frequency magnetic induction sounding. The study concluded that the enhanced dataset provided by coordinated observation between flagship, in Jovian orbit, and nanosatellite, in Europa orbit, using a fluxgate magnetometer of Rosetta heritage, would enable a more complete understanding of Europa's induction response by providing synchronous datasets between the Jovian plasma torus and the induced magnetosphere of Europa. We propose that these Magnetic INduction Ocean Sounders or MINOS spacecraft can play a similar role for all of the icy moons of the Jovian and Saturnian systems, providing close proximity multi-period magnetic induction sounding to compliment plasma suites and ice penetrating radar while setting the stage for alternative payloads and enhanced exploration of these potentially habitable worlds.

  20. Evolution of microwave limb sounder ozone and the polar vortex during winter

    Science.gov (United States)

    Manney, G. L.; Froidevaux, L.; Waters, J. W.; Zurek, R. W.

    1995-01-01

    The evolution of polar ozone observed by the Upper Atmosphere Research Satellite (UARS) Microwave Limb Sounder (MLS) is described for the northern hemisphere (NH) winters of 1991/1992, 1992/1993, and 1993/1994 and the southern hemisphere (SH) winters of 1992 and 1993. Imterannual and interhemispheric variability in polar ozone evolution are closely related to differences in the polar vortex and to the frequency, duration and strength of stratospheric sudden warmings. Ozone in the midstratospheric vortices increases during the winter, with largest increases associated with stratospheric warmings and a much larger increase in the NH than in the SH. A smaller NH increase was observed in 1993/1994, when the middle stratospheric vortex was stronger. During strong stratospheric warmings in the NH, the upper stratospheric vortex may be so much eroded that it presents little barrier to poleward transport; in contrast, the SH vortex remains strong throughout the stratosphere during wintertime warmings, and ozone increases only below the mixing ratio peak, due to enhanced diabatic descent. Ozone mixing ratios decrease rapidly in the lower stratosphere in both SH late winters, as expected from chemical destruction due to enhanced reactive chlorine. The interplay between dynamics and chemistry is more complex in the NH lower stratosphere and interannual variability is greater. Evidence has previously been shown for chemical ozone destruction in the 1991/1992 and 1992/1993 winters. We show here evidence suggesting some chemical destruction in late February and early March 1994. In the NH late winter lower stratosphere the pattern of high-ozone values (typical of the vortex) seen in mid-latitudes is related to the strength of the lower-stratospheric vortex, with the largest areal extent of high ozone outside the vortex in 1994, when the lower stratospheric vortex is relatively weak, and the least extent in 1993 when the lower stratospheric vortex is strongest.

  1. Validation of Aura Microwave Limb Sounder stratospheric water vapor measurements by the NOAA frost point hygrometer

    Science.gov (United States)

    Hurst, Dale F.; Lambert, Alyn; Read, William G.; Davis, Sean M.; Rosenlof, Karen H.; Hall, Emrys G.; Jordan, Allen F.; Oltmans, Samuel J.

    2017-01-01

    Differences between stratospheric water vapor measurements by NOAA frost point hygrometers (FPHs) and the Aura Microwave Limb Sounder (MLS) are evaluated for the period August 2004 through December 2012 at Boulder, Colorado, Hilo, Hawaii, and Lauder, New Zealand. Two groups of MLS profiles coincident with the FPH soundings at each site are identified using unique sets of spatiotemporal criteria. Before evaluating the differences between coincident FPH and MLS profiles, each FPH profile is convolved with the MLS averaging kernels for eight pressure levels from 100 to 26 hPa (~16 to 25 km) to reduce its vertical resolution to that of the MLS water vapor retrievals. The mean FPH – MLS differences at every pressure level (100 to 26 hPa) are well within the combined measurement uncertainties of the two instruments. However, the mean differences at 100 and 83 hPa are statistically significant and negative, ranging from −0.46 ± 0.22 ppmv (−10.3 ± 4.8%) to −0.10 ± 0.05 ppmv (−2.2 ± 1.2%). Mean differences at the six pressure levels from 68 to 26 hPa are on average 0.8% (0.04 ppmv), and only a few are statistically significant. The FPH – MLS differences at each site are examined for temporal trends using weighted linear regression analyses. The vast majority of trends determined here are not statistically significant, and most are smaller than the minimum trends detectable in this analysis. Except at 100 and 83 hPa, the average agreement between MLS retrievals and FPH measurements of stratospheric water vapor is better than 1%. PMID:28845378

  2. Impact of Atmospheric Infrared Sounder (AIRS) Thermodynamic Profiles on Regional Precipitation Forecasting

    Science.gov (United States)

    Chou, S.-H.; Zavodsky, B. T.; Jedloved, G. J.

    2010-01-01

    In data sparse regions, remotely-sensed observations can be used to improve analyses and lead to better forecasts. One such source comes from the Atmospheric Infrared Sounder (AIRS), which together with the Advanced Microwave Sounding Unit (AMSU), provides temperature and moisture profiles in clear and cloudy regions with accuracy which approaches that of radiosondes. The purpose of this paper is to describe an approach to assimilate AIRS thermodynamic profile data into a regional configuration of the Advanced Research WRF (ARW) model using WRF-Var. Quality indicators are used to select only the highest quality temperature and moisture profiles for assimilation in clear and partly cloudy regions, and uncontaminated portions of retrievals above clouds in overcast regions. Separate error characteristics for land and water profiles are also used in the assimilation process. Assimilation results indicate that AIRS profiles produce an analysis closer to in situ observations than the background field. Forecasts from a 37-day case study period in the winter of 2007 show that AIRS profile data can lead to improvements in 6-h cumulative precipitation forecasts resulting from improved thermodynamic fields. Additionally, in a convective heavy rainfall event from February 2007, assimilation of AIRS profiles produces a more unstable boundary layer resulting in enhanced updrafts in the model. These updrafts produce a squall line and precipitation totals that more closely reflect ground-based observations than a no AIRS control forecast. The location of available high-quality AIRS profiles ahead of approaching storm systems is found to be of paramount importance to the amount of impact the observations will have on the resulting forecasts.

  3. Impact of Atmospheric Infrared Sounder (AIRS) Thermodynamic Profiles on Regional Weather Forecasting

    Science.gov (United States)

    Chou, Shih-Hung; Zavodsky, Bradley T.; Jedlovee, Gary J.

    2010-01-01

    In data sparse regions, remotely-sensed observations can be used to improve analyses and lead to better forecasts. One such source comes from the Atmospheric Infrared Sounder (AIRS), which together with the Advanced Microwave Sounding Unit (AMSU), provides temperature and moisture profiles with accuracy comparable to that of radiosondes. The purpose of this paper is to describe a procedure to assimilate AIRS thermodynamic profile data into a regional configuration of the Advanced Research Weather Research and Forecasting (WRF-ARW) model using its three-dimension variational (3DVAR) analysis component (WRF-Var). Quality indicators are used to select only the highest quality temperature and moisture profiles for assimilation in both clear and partly cloudy regions. Separate error characteristics for land and water profiles are also used in the assimilation process. Assimilation results indicate that AIRS profiles produce an analysis closer to in situ observations than the background field. Forecasts from a 37-day case study period in the winter of 2007 show that AIRS profile data can lead to improvements in 6-h cumulative precipitation forecasts due to instability added in the forecast soundings by the AIRS profiles. Additionally, in a convective heavy rainfall event from February 2007, assimilation of AIRS profiles produces a more unstable boundary layer resulting in enhanced updrafts in the model. These updrafts produce a squall line and precipitation totals that more closely reflect ground-based observations than a no AIRS control forecast. The location of available high-quality AIRS profiles ahead of approaching storm systems is found to be of paramount importance to the amount of impact the observations will have on the resulting forecasts.

  4. The Impact of Atmospheric InfraRed Sounder (AIRS) Profiles on Short-term Weather Forecasts

    Science.gov (United States)

    Chou, Shih-Hung; Zavodsky, Brad; Jedlovec, Gary J.; Lapenta, William

    2007-01-01

    The Atmospheric Infrared Sounder (AIRS), together with the Advanced Microwave Sounding Unit (AMSU), represents one of the most advanced spacebased atmospheric sounding systems. The combined AlRS/AMSU system provides radiance measurements used to retrieve temperature profiles with an accuracy of 1 K over 1 km layers under both clear and partly cloudy conditions, while the accuracy of the derived humidity profiles is 15% in 2 km layers. Critical to the successful use of AIRS profiles for weather and climate studies is the use of profile quality indicators and error estimates provided with each profile Aside form monitoring changes in Earth's climate, one of the objectives of AIRS is to provide sounding information of sufficient accuracy such that the assimilation of the new observations, especially in data sparse region, will lead to an improvement in weather forecasts. The purpose of this paper is to describe a procedure to optimally assimilate highresolution AIRS profile data in a regional analysis/forecast model. The paper will focus on the impact of AIRS profiles on a rapidly developing east coast storm and will also discuss preliminary results for a 30-day forecast period, simulating a quasi-operation environment. Temperature and moisture profiles were obtained from the prototype version 5.0 EOS science team retrieval algorithm which includes explicit error information for each profile. The error profile information was used to select the highest quality temperature and moisture data for every profile location and pressure level for assimilation into the ARPS Data Analysis System (ADAS). The AIRS-enhanced analyses were used as initial fields for the Weather Research and Forecast (WRF) system used by the SPORT project for regional weather forecast studies. The ADASWRF system will be run on CONUS domain with an emphasis on the east coast. The preliminary assessment of the impact of the AIRS profiles will focus on quality control issues associated with AIRS

  5. Measurement approach and design of the CubeSat Infrared Atmospheric Sounder (CIRAS)

    Science.gov (United States)

    Pagano, Thomas S.; Rider, David; Rud, Mayer; Ting, David; Yee, Karl

    2016-09-01

    The CubeSat Infrared Atmospheric Sounder (CIRAS) will measure upwelling infrared radiation of the Earth in the MWIR region of the spectrum from space on a CubeSat. The observed radiances have information of potential value to weather forecasting agencies and can be used to retrieve lower tropospheric temperature and water vapor globally for weather and climate science investigations. Multiple units can be flown to improve temporal coverage or in formation to provide new data products including 3D atmospheric motion vector winds. CIRAS incorporates key new instrument technologies including a 2D array of High Operating Temperature Barrier Infrared Detector (HOT-BIRD) material, selected for its high uniformity, low cost, low noise and higher operating temperatures than traditional materials. The detectors are hybridized to a commercial ROIC and commercial camera electronics. The second key technology is an MWIR Grating Spectrometer (MGS) designed to provide imaging spectroscopy for atmospheric sounding in a CubeSat volume. The MGS has no moving parts and includes an immersion grating to reduce the volume and reduce distortion. The third key technology is an infrared blackbody fabricated with black silicon to have very high emissivity in a flat plate construction. JPL will also develop the mechanical, electronic and thermal subsystems for CIRAS, while the spacecraft will be a commercially available CubeSat. The integrated system will be a complete 6U CubeSat capable of measuring temperature and water vapor profiles with good lower tropospheric sensitivity. The CIRAS is the first step towards the development of an Earth Observation Nanosatellite Infrared (EON-IR) capable of operational readiness to mitigate a potential loss of CrIS on JPSS or complement the current observing system with different orbit crossing times.

  6. Definition and preliminary design of the Laser Atmospheric Wind Sounder (LAWS) phase 1. Volume 2

    Science.gov (United States)

    1990-01-01

    The steps and engineering trades and analyses used in establishing the initial requirements and in developing a concept and configuration for the laser atmospheric wind sounder (LAWS) instrument. A summary of the performance anticipated from the baseline configuration, and a bibliography are presented. LAWS, which is a facility instrument of the Earth observing system (EOS), is the culmination of over 20 years of effort in the field of laser Doppler wind sensing and will be the first instrument to fly in space capable of providing global-scale tropospheric wind profiles at high spatial resolutions. Global-scale wind profiles are necessary for: (1) more accurate diagnosis of large-scale circulation and climate dynamics; (2) improved numerical weather prediction; (3) improved understanding of mesoscale systems; and (4) improved understanding of global biogeochemical and hydrologic cycles. The objective of phase 1 was to define and perform a preliminary design for the LAWS instrument. The definition phase consisted of identifying realistic concepts for LAWS and analyzing them in sufficient detail to be able to choose the most promising one for the LAWS instrument. Systems and subsystems configurations were then developed for the chosen concept. The concept and subsequent configuration were to be compatible with two prospective platforms: the Japanese polar orbiting platform (JPOP) and as an attached payload on the Space Station Freedom. After a thorough and objective concept selection process, a heterodyne detection Doppler lidar using a CO2 laser transmitter operating a 9.1 micron over a 2.1 micron solid state system was chosen. A configuration for LAWS that meets the performance requirements was designed at the conclusion of phase 1.

  7. Phase Change Material for Temperature Control of Imager or Sounder on GOES Type Satellites in GEO

    Science.gov (United States)

    Choi, Michael

    2013-01-01

    An imager or sounder on satellites, such as the Geostationary Operational Environmental Satellite (GOES), in geostationary orbit (GEO) has a scan mirror and motor in the scan cavity. The GEO orbit is 24 hours long. During part of the orbit, direct sunlight enters the scan aperture and adds heat to components in the scan cavity. Solar heating also increases the scan motor temperature. Overheating of the scan motor could reduce its reliability. For GOES-N to P, a radiator with a thermal louver rejects the solar heat absorbed to keep the scan cavity cool. A sunshield shields the radiator/louver from the Sun. This innovation uses phase change material (PCM) in the scan cavity to maintain the temperature stability of the scan mirror and motor. When sunlight enters the scan aperture, solar heating causes the PCM to melt. When sunlight stops entering the scan aperture, the PCM releases the thermal energy stored to keep the components in the scan cavity warm. It reduces the heater power required to make up the heat lost by radiation to space through the aperture. This is a major advantage when compared to a radiator/ louver. PCM is compact because it has a high solid-to-liquid enthalpy. Also, it could be spread out in the scan cavity. This is another advantage. Paraffin wax is a good PCM candidate, with high solid-to-liquid enthalpy, which is about 225 kJ/kg. For GOES-N to P, a radiator with a louver rejects the solar heat that enters the aperture to keep the scan cavity cool. For the remainder of the orbit, sunlight does not enter the scan aperture. However, the radiator/louver continues radiating heat to space because the louver effective emittance is about 0.12, even if the louver is fully closed. This requires makeup heater power to maintain the temperature within the stability range.

  8. 25 Years of Atmospheric Science with the Balloon-borne Limb Sounder MIPAS-B

    Science.gov (United States)

    Oelhaf, H.; Friedl-Vallon, F.; Wetzel, G.; Ebersoldt, A.; Hoepfner, M.; Kleinert, A.; Maucher, G.; Maurer, K.; Nordmeyer, H.; Piesch, C.; Ruhnke, R.; Sartorius, C.; Sinnhuber, B. M.; Orphal, J.; Fischer, H.

    2017-12-01

    MIPAS-B (Michelson Interferometer for Passive Atmospheric Sounding - Balloon) is a balloon-borne limb-emission sounder for atmospheric research. The heart of the instrument is a Fourier spectrometer that covers the mid-infrared spectral range (4 to 14 µm) operating at a temperature of approximately 215 K. Essential for this application is the sophisticated line of sight stabilization system, which is based on an inertial navigation system and supplemented with a star camera reference system. The major scientific benefit of the instrument is the simultaneous detection of complete trace gas families in the stratosphere, without restrictions concerning time of the day and viewing directions. MIPAS-B is an in-house development that was started in the mid-eighties. It initially served as proof of concept for the proposed space borne MIPAS instrument that was later realized and operated on the ESA satellite ENVISAT between 2002 and 2012. But actually it soon became obvious that operation from stratospheric balloons offered a number of benefits to address dedicated scientific questions in an optimal way. MIPAS-B was operated in two versions during 24 flights at tropical, mid-latitudinal and arctic latitudes between 1989 and 2014 covering the `golden era' of ozone loss research and the full operational period of ENVISAT. This paper describes briefly specifications, design considerations, technological upgrades and the characterization of the instrument. Evolving skills with respect to its remote operation from ground and to data analysis in the course of the 25 years are outlined. Scientific applications in the field of atmospheric research, spectroscopy and satellite validation are highlighted with a focus on recent research concerning bromine nitrate and age of air.

  9. Validation of the Aura Microwave Limb Sounder Temperature and Geopotential Height Measurements

    Science.gov (United States)

    Schwartz, M. J.; Lambert, A.; Manney, G. L.; Read, W. G.; Livesey, N. J.; Froidevaux, L.; Ao, C. O.; Bernath, P. F.; Boone, C. D.; Cofield, R. E.; hide

    2007-01-01

    This paper describes the retrievals algorithm used to determine temperature and height from radiance measurements by the Microwave Limb Sounder on EOS Aura. MLS is a "limbscanning" instrument, meaning that it views the atmosphere along paths that do not intersect the surface - it actually looks forwards from the Aura satellite. This means that the temperature retrievals are for a "profile" of the atmosphere somewhat ahead of the satellite. Because of the need to view a finite sample of the atmosphere, the sample spans a box about 1.5km deep and several tens of kilometers in width; the optical characteristics of the atmosphere mean that the sample is representative of a tube about 200-300km long in the direction of view. The retrievals use temperature analyses from NASA's Goddard Earth Observing System, Version 5 (GEOS-5) data assimilation system as a priori states. The temperature retrievals are somewhat deperrdezt on these a priori states, especially in the lower stratosphere. An important part of the validation of any new dataset involves comparison with other, independent datasets. A large part of this study is concerned with such comparisons, using a number of independent space-based measurements obtained using different techniques, and with meteorological analyses. The MLS temperature data are shown to have biases that vary with height, but also depend on the validation dataset. MLS data are apparently biased slightly cold relative to correlative data in the upper troposphere and slightly warm in the middle stratosphere. A warm MLS bias in the upper stratosphere may be due to a cold bias in GEOS-5 temperatures.

  10. Diurnal Variations of Dust from Mars Climate Sounder Observations: Initial Results

    Science.gov (United States)

    Kleinboehl, A.

    2017-12-01

    Over the recent years, research on the Martian atmosphere has been focusing increasingly on aerosols. One recent focus has been on detached dust layers (DDL) as they have a significant radiative impact on the atmosphere. The dust distribution in the Martian atmosphere is affected by transport processes like lifting, advection, and sedimentation. However, lifting and sedimentation processes are only poorly understood, and the formation mechanism of DDLs is unclear. Significant variations in the occurrence of DDLs have been observed in comparisons of nearly co-located daytime and nighttime dust extinction measurements by the Mars Climate Sounder (MCS). However, the detailed behavior of changes in the vertical profile of dust over the course of a day has largely been unexplored. To date, aerosol studies by MCS have been limited to observations around 3 am and 3 pm local time due to the sun-synchronous orbit of the Mars Reconnaissance Orbiter (MRO), from which MCS is operated. MCS nominally observes in the direction of the MRO orbit track. Since Sep. 2010 the MCS instrument has been performing frequent sideways scans to obtain measurements at various local times. These special measurements yield nearly global coverage while sampling local times within a few hours of the nominal local time determined by the MRO orbit track. Of particular interest is the behavior at latitudes where cross-track measurements intersect with in-track measurements such that the same airmass is sampled 3 times in intervals of 2 hours at mid-latitudes. Here I present initial analyses of dust vertical profiles retrieved from these MCS observations during the dusty season of the Martian year. Dust opacities tend to be highest within 25 km of the surface and decreasing above. Numerous sets of profiles have been identified in the southern mid-latitudes in which this dust opacity slope is lofted by several kilometers in altitude between 4 pm and 6 pm local time. The behavior is largely restricted to

  11. Evaluating the Impact of Atmospheric Infrared Sounder (AIRS) Data On Convective Forecasts

    Science.gov (United States)

    Kozlowski, Danielle; Zavodsky, Bradley

    2011-01-01

    The Short-term Prediction Research and Transition Center (SPoRT) is a collaborative partnership between NASA and operational forecasting partners, including a number of National Weather Service (NWS) offices. SPoRT provides real-time NASA products and capabilities to its partners to address specific operational forecast challenges. The mission of SPoRT is to transition observations and research capabilities into operations to help improve short-term weather forecasts on a regional scale. Two areas of focus are data assimilation and modeling, which can to help accomplish SPoRT's programmatic goals of transitioning NASA data to operational users. Forecasting convective weather is one challenge that faces operational forecasters. Current numerical weather prediction (NWP) models that operational forecasters use struggle to properly forecast location, timing, intensity and/or mode of convection. Given the proper atmospheric conditions, convection can lead to severe weather. SPoRT's partners in the National Oceanic and Atmospheric Administration (NOAA) have a mission to protect the life and property of American citizens. This mission has been tested as recently as this 2011 severe weather season, which has seen more than 300 fatalities and injuries and total damages exceeding $10 billion. In fact, during the three day period from 25-27 April, 1,265 storms reports (362 tornado reports) were collected making this three day period one of most active in American history. To address the forecast challenge of convective weather, SPoRT produces a real-time NWP model called the SPoRT Weather Research and Forecasting (SPoRT-WRF), which incorporates unique NASA data sets. One of the NASA assets used in this unique model configuration is retrieved profiles from the Atmospheric Infrared Sounder (AIRS).The goal of this project is to determine the impact that these AIRS profiles have on the SPoRT-WRF forecasts by comparing to a current operational model and a control SPoRT-WRF model

  12. Regional Precipitation Forecast with Atmospheric InfraRed Sounder (AIRS) Profile Assimilation

    Science.gov (United States)

    Chou, S.-H.; Zavodsky, B. T.; Jedloved, G. J.

    2010-01-01

    Advanced technology in hyperspectral sensors such as the Atmospheric InfraRed Sounder (AIRS; Aumann et al. 2003) on NASA's polar orbiting Aqua satellite retrieve higher vertical resolution thermodynamic profiles than their predecessors due to increased spectral resolution. Although these capabilities do not replace the robust vertical resolution provided by radiosondes, they can serve as a complement to radiosondes in both space and time. These retrieved soundings can have a significant impact on weather forecasts if properly assimilated into prediction models. Several recent studies have evaluated the performance of specific operational weather forecast models when AIRS data are included in the assimilation process. LeMarshall et al. (2006) concluded that AIRS radiances significantly improved 500 hPa anomaly correlations in medium-range forecasts of the Global Forecast System (GFS) model. McCarty et al. (2009) demonstrated similar forecast improvement in 0-48 hour forecasts in an offline version of the operational North American Mesoscale (NAM) model when AIRS radiances were assimilated at the regional scale. Reale et al. (2008) showed improvements to Northern Hemisphere 500 hPa height anomaly correlations in NASA's Goddard Earth Observing System Model, Version 5 (GEOS-5) global system with the inclusion of partly cloudy AIRS temperature profiles. Singh et al. (2008) assimilated AIRS temperature and moisture profiles into a regional modeling system for a study of a heavy rainfall event during the summer monsoon season in Mumbai, India. This paper describes an approach to assimilate AIRS temperature and moisture profiles into a regional configuration of the Advanced Research Weather Research and Forecasting (WRF-ARW) model using its three-dimensional variational (3DVAR) assimilation system (WRF-Var; Barker et al. 2004). Section 2 describes the AIRS instrument and how the quality indicators are used to intelligently select the highest-quality data for assimilation

  13. Assimilation of Atmospheric InfraRed Sounder (AIRS) Profiles using WRF-Var

    Science.gov (United States)

    Zavodsky, Brad; Jedlovec, Gary J.; Lapenta, William

    2008-01-01

    The Weather Research and Forecasting (WRF) model contains a three-dimensional variational (3DVAR) assimilation system (WRF-Var), which allows a user to join data from multiple sources into one coherent analysis. WRF-Var combines observations with a background field traditionally generated using a previous model forecast through minimization of a cost function. In data sparse regions, remotely-sensed observations may be able to improve analyses and produce improved forecasts. One such source comes from the Atmospheric Infrared Sounder (AIRS), which together with the Advanced Microwave Sounding Unit (AMSU), represents one of the most advanced space-based atmospheric sounding systems. The combined AIRS/AMSU system provides radiance measurements used as input to a sophisticated retrieval scheme which has been shown to produce temperature profiles with an accuracy of 1 K over 1 km layers and humidity profiles with accuracy of 15% in 2 km layers in both clear and partly cloudy conditions. The retrieval algorithm also provides estimates of the accuracy of the retrieved values at each pressure level, allowing the user to select profiles based on the required error tolerances of the application. The purpose of this paper is to describe a procedure to optimally assimilate high-resolution AIRS profile data into a regional configuration of the Advanced Research WRF (ARW) version 2.2 using WRF-Var. The paper focuses on development of background error covariances for the regional domain and background field type using gen_be and an optimal methodology for ingesting AIRS temperature and moisture profiles as separate overland and overwater retrievals with different error characteristics in the WRF-Var. The AIRS thermodynamic profiles are obtained from the version 5.0 Earth Observing System (EOS) science team retrieval algorithm and contain information about the quality of each temperature layer. The quality indicators are used to select the highest quality temperature and moisture

  14. Hurricane Alex as Observed by NASA's Spaceborne Atmospheric Infrared Sounder (AIRS)

    Science.gov (United States)

    2004-01-01

    6 mph. [figure removed for brevity, see original site] August 1, 2004, 1:30am ET Daylight snapshot from AIRS visible/near-infrared. At the time AIRS made this observation, Alex was still a tropical depression and just getting organized. Movies Slice down the atmosphere with the AIRS infrared sensor. [figure removed for brevity, see original site] August 3, 2004, 1:30am ET Alex becomes the first hurricane of the 2004 North Atlantic season with sustained winds at 75 mph. [figure removed for brevity, see original site] August 2, 2004, 1:30pm ET Alex is located about 120 miles southeast of Charleston, South Carolina. Alex has now begun to move to the northeast and a general northeastward track is expected the next couple of days with a gradual acceleration in forward speed as it begins to interact with stronger upper level winds. [figure removed for brevity, see original site] August 2, 2004, 1:30am ET Alex now has sustained winds of 35 knots. [figure removed for brevity, see original site] August 1, 2004, 1:30pm ET Alex is tropical depression and beginning to get organized. The Atmospheric Infrared Sounder Experiment, with its visible, infrared, and microwave detectors, provides a three-dimensional look at Earth's weather. Working in tandem, the three instruments can make simultaneous observations all the way down to the Earth's surface, even in the presence of heavy clouds. With more than 2,000 channels sensing different regions of the atmosphere, the system creates a global, 3-D map of atmospheric temperature and humidity and provides information on clouds, greenhouse gases, and many other atmospheric phenomena. The AIRS Infrared Sounder Experiment flies onboard NASA's Aqua spacecraft and is managed by NASA's Jet Propulsion Laboratory, Pasadena, Calif., under contract to NASA. JPL is a division of the California Institute of Technology in Pasadena.

  15. Space Electron Density Gradient Studies using a 3D Embedded Reconfigurable Sounder and ESA/NASA CLUSTER Mission

    Science.gov (United States)

    Dekoulis, George

    2016-07-01

    This paper provides a direct comparison between data captured by a new embedded reconfigurable digital sounder, different ground-based ionospheric sounders spread around Europe and the ESA/NASA CLUSTER mission. The CLUSTER mission consists of four identical space probes flying in a formation that allows measurements of the electron density gradient in the local magnetic field. Both the ground-based and the spacecraft instrumentations assist in studying the motion, geometry and boundaries of the plasmasphere. The comparison results are in accordance to each other. Some slight deviations among the captured data were expected from the beginning of this investigation. These small discrepancies are reasonable and seriatim analyzed. The results of this research are significant, since the level of the plasma's ionization, which is related to the solar activity, dominates the propagation of electromagnetic waves through it. Similarly, unusually high solar activity presents serious hazards to orbiting satellites, spaceborne instrumentation, satellite communications and infrastructure located on the Earth's surface. Long-term collaborative study of the data is required to continue, in order to identify and determine the enhanced risk in advance. This would allow scientists to propose an immediate cure.

  16. A global climatology of upper-tropospheric ice supersaturation occurrence inferred from the Atmospheric Infrared Sounder calibrated by MOZAIC

    Directory of Open Access Journals (Sweden)

    N. Lamquin

    2012-01-01

    Full Text Available Ice supersaturation in the upper troposphere is a complex and important issue for the understanding of cirrus cloud formation. On one hand, infrared sounders have the ability to provide cloud properties and atmospheric profiles of temperature and humidity. On the other hand, they suffer from coarse vertical resolution, especially in the upper troposphere and therefore are unable to detect shallow ice supersaturated layers. We have used data from the Measurements of OZone and water vapour by AIrbus in-service airCraft experiment (MOZAIC in combination with Atmospheric InfraRed Sounder (AIRS relative humidity measurements and cloud properties to develop a calibration method for an estimation of occurrence frequencies of ice supersaturation. This method first determines the occurrence probability of ice supersaturation, detected by MOZAIC, as a function of the relative humidity determined by AIRS. The occurrence probability function is then applied to AIRS data, independently of the MOZAIC data, to provide a global climatology of upper-tropospheric ice supersaturation occurrence. Our climatology is then compared to ice supersaturation occurrence statistics from MOZAIC alone and related to high cloud occurrence from the Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP. As an example of application it is compared to model climatologies of ice supersaturation from the Integrated Forecast System (IFS of the European Centre for Medium-Range Weather Forecasts (ECMWF and from the European Centre HAmburg Model (ECHAM4. This study highlights the benefits of multi-instrumental synergies for the investigation of upper tropospheric ice supersaturation.

  17. Evaluation of the Impact of Atmospheric Infrared Sounder (AIRS) Radiance and Profile Data Assimilation in Partly Cloudy Regions

    Science.gov (United States)

    Zavodsky, Bradley; Srikishen, Jayanthi; Jedlovec, Gary

    2013-01-01

    Improvements to global and regional numerical weather prediction have been demonstrated through assimilation of data from NASA s Atmospheric Infrared Sounder (AIRS). Current operational data assimilation systems use AIRS radiances, but impact on regional forecasts has been much smaller than for global forecasts. Retrieved profiles from AIRS contain much of the information that is contained in the radiances and may be able to reveal reasons for this reduced impact. Assimilating AIRS retrieved profiles in an identical analysis configuration to the radiances, tracking the quantity and quality of the assimilated data in each technique, and examining analysis increments and forecast impact from each data type can yield clues as to the reasons for the reduced impact. By doing this with regional scale models individual synoptic features (and the impact of AIRS on these features) can be more easily tracked. This project examines the assimilation of hyperspectral sounder data used in operational numerical weather prediction by comparing operational techniques used for AIRS radiances and research techniques used for AIRS retrieved profiles. Parallel versions of a configuration of the Weather Research and Forecasting (WRF) model with Gridpoint Statistical Interpolation (GSI) are run to examine the impact AIRS radiances and retrieved profiles. Statistical evaluation of 6 weeks of forecast runs will be compared along with preliminary results of in-depth investigations for select case comparing the analysis increments in partly cloudy regions and short-term forecast impacts.

  18. Impact of advanced technology microwave sounder data in the NCMRWF 4D-VAR data assimilation system

    Science.gov (United States)

    Rani, S. Indira; Srinivas, D.; Mallick, Swapan; George, John P.

    2016-05-01

    This study demonstrates the added benefits of assimilating the Advanced Technology Microwave Sounder (ATMS) radiances from the Suomi-NPP satellite in the NCMRWF Unified Model (NCUM). ATMS is a cross-track scanning microwave radiometer inherited the legacy of two very successful instrument namely, Advanced Microwave Sounding Unit-A (AMSU-A) and Microwave Humidity Sounder (MHS). ATMS has 22 channels: 11 temperature sounding channels around 50-60 GHz oxygen band and 6 moisture sounding channels around the 183GHz water vapour band in addition to 5 channels sensitive to the surface in clear conditions, or to water vapour, rain, and cloud when conditions are not clear (at 23, 31, 50, 51 and 89 GHz). Before operational assimilation of any new observation by NWP centres it is standard practice to assess data quality with respect to NWP model background (short-forecast) fields. Quality of all channels is estimated against the model background and the biases are computed and compared against that from the similar observations. The impact of the ATMS data on global analyses and forecasts is tested by adding the ATMS data in the NCUM Observation Processing system (OPS) and 4D-Var variational assimilation (VAR) system. This paper also discusses the pre-operational numerical experiments conducted to assess the impact of ATMS radiances in the NCUM assimilation system. It is noted that the performance of ATMS is stable and it contributes to the performance of the model, complimenting observations from other instruments.

  19. Thermal Band Atmospheric Correction Using Atmospheric Profiles Derived from Global Positioning System Radio Occultation and the Atmospheric Infrared Sounder

    Science.gov (United States)

    Pagnutti, Mary; Holekamp, Kara; Stewart, Randy; Vaughan, Ronald D.

    2006-01-01

    This Rapid Prototyping Capability study explores the potential to use atmospheric profiles derived from GPS (Global Positioning System) radio occultation measurements and by AIRS (Atmospheric Infrared Sounder) onboard the Aqua satellite to improve surface temperature retrieval from remotely sensed thermal imagery. This study demonstrates an example of a cross-cutting decision support technology whereby NASA data or models are shown to improve a wide number of observation systems or models. The ability to use one data source to improve others will be critical to the GEOSS (Global Earth Observation System of Systems) where a large number of potentially useful systems will require auxiliary datasets as input for decision support. Atmospheric correction of thermal imagery decouples TOA radiance and separates surface emission from atmospheric emission and absorption. Surface temperature can then be estimated from the surface emission with knowledge of its emissivity. Traditionally, radiosonde sounders or atmospheric models based on radiosonde sounders, such as the NOAA (National Oceanic & Atmospheric Administration) ARL (Air Resources Laboratory) READY (Real-time Environmental Application and Display sYstem), provide the atmospheric profiles required to perform atmospheric correction. Unfortunately, these types of data are too spatially sparse and too infrequently taken. The advent of high accuracy, global coverage, atmospheric data using GPS radio occultation and AIRS may provide a new avenue for filling data input gaps. In this study, AIRS and GPS radio occultation derived atmospheric profiles from the German Aerospace Center CHAMP (CHAllenging Minisatellite Payload), the Argentinean Commission on Space Activities SAC-C (Satellite de Aplicaciones Cientificas-C), and the pair of NASA GRACE (Gravity Recovery and Climate Experiment) satellites are used as input data in atmospheric radiative transport modeling based on the MODTRAN (MODerate resolution atmospheric

  20. Inferring the acoustic dead-zone volume by split-beam echo sounder with narrow-beam transducer on a noninertial platform.

    Science.gov (United States)

    Patel, Ruben; Pedersen, Geir; Ona, Egil

    2009-02-01

    Acoustic measurement of near-bottom fish with a directional transducer is generally problematical because the powerful bottom echo interferes with weaker echoes from fish within the main lobe but at greater ranges than that of the bottom. The volume that is obscured is called the dead zone. This has already been estimated for the special case of a flat horizontal bottom when observed by an echo sounder with a stable vertical transducer beam [Ona, E., and Mitson, R. B. (1996). ICES J. Mar. Sci. 53, 677-690]. The more general case of observation by a split-beam echo sounder with a transducer mounted on a noninertial platform is addressed here. This exploits the capability of a split-beam echo sounder to measure the bottom slope relative to the beam axis and thence to allow the dead-zone volume over a flat but sloping bottom to be estimated analytically. The method is established for the Simrad EK60 scientific echo sounder, with split-beam transducers operating at 18, 38, 70, 120, and 200 kHz. It is validated by comparing their estimates of seafloor slope near the Lofoten Islands, N67-70, with simultaneous measurements made by two hydrographic multibeam sonars, the Simrad EM100295 kHz and EM30030 kHz systems working in tandem.

  1. Surface Clutter Suppression Techniques Applied to P-band Multi-Channel SAR Ice Sounder Data from East Antarctica

    DEFF Research Database (Denmark)

    Lin, Chung-Chi; Bekaert, David; Gebert, Nicolas

    Radar ice sounding allows for the retrieval of ice depth and provides information on ba-sal topography, basal conditions, flow, and layering. In the prospect of a possible future satellite ice sounding mission, surface clutters are expected to severely hamper measurement of radar ech-oes from...... the depth due to the unfavourable observation geometry. Synthetic aperture radar (SAR) processing enables to attenuate surface clutters in the forward and backward directions, but not in the across-track directions. Thus, additional across-track clutter cancellation is a crucial step for extracting weaker...... subsurface radar echoes. ESA’s P-band POLarimetric Airborne Radar Ice Sounder (POLARIS), recently upgraded with a larger antenna of 4 m length, enables simultaneous reception of up to 4 sub-aperture channels in across-track. Laboratory of Electromagnetics and Acoustics of Swiss Fed. Institute of Tech...

  2. Acoustic-sounder investigation of the effects of boundary-layer decoupling on long-distance polutant transport

    International Nuclear Information System (INIS)

    Miller, E.L.

    1976-01-01

    The formation of the nocturnal surface temperature inversion results in a decrease in vertical momentum transfer which, in turn, is accompanied by an associated reduction in the transfer of pollutants from the atmosphere to surface sinks, thus decoupling the surface layer from the layer above the inversion. The diurnal oscillation in the surface temperature profiles may therefore have a significant effect upon the transport of atmospheric pollutants over long distances. Flights of a large manned balloon with a diverse array of chemical and meteorological instrumentation aboard, known as Project de Vinci, provided a unique opportunity to combine acoustic-sounder observations of qualitative temperature structure in the atmospheric boundary layer with the chemical measurements necessary to gain increased understanding of this decoupling process and its consequences for pollutant transport. The data collected on ozone on the balloon and the grounds are reported

  3. Real-time Data Processing and Visualization for the Airborne Scanning High-resolution Interferometer Sounder (S-HIS)

    Science.gov (United States)

    Taylor, J. K.; Revercomb, H. E.; Hoese, D.; Garcia, R. K.; Smith, W. L.; Weisz, E.; Tobin, D. C.; Best, F. A.; Knuteson, R. O.; Sullivan, D. V.; Barnes, C. M.; Van Gilst, D. P.

    2015-12-01

    The Hurricane and Severe Storm Sentinel (HS3) is a five-year NASA mission targeted to enhance the understanding of the formation and evolution of hurricanes in the Atlantic basin. Measurements were made from two NASA Global Hawk Unmanned Aircraft Systems (UAS) during the 2012 through 2014 hurricane seasons, with flights conducted from the NASA Wallops Flight Facility. The Global Hawk aircraft are capable of high altitude flights with durations of up to 30 hours, which allow extensive observations over distant storms, not typically possible with manned aircraft. The two NASA Global Hawks were equipped with instrument suites to study the storm environment, and inner core structure and processes, respectively. The Scanning High-resolution Interferometer Sounder (S-HIS), designed and built by the University of Wisconsin (UW) Space Science and Engineering Center (SSEC), measures emitted thermal radiation at high spectral resolution between 3.3 and 18 microns. The radiance measurements are used to obtain temperature and water vapor profiles of the Earth's atmosphere. The S-HIS spatial resolution is 2 km at nadir, across a 40 km ground swath from a nominal altitude of 20 kilometers. Since 1998, the S-HIS has participated in 33 field campaigns and has proven to be extremely dependable, effective, and highly accurate. It has flown on the NASA ER-2, DC-8, Proteus, WB-57, and Global Hawk airborne platforms. The UW S-HIS infrared sounder instrument is equipped with a real-time ground data processing system capable of delivering atmospheric profiles, radiance data, and engineering status to mission support scientists - all within less than one minute from the time of observation. This ground data processing system was assembled by a small team using existing software and proven practical techniques similar to a satellite ground system architecture. This summary outlines the design overview for the system and illustrates the data path, content, and outcomes.

  4. Temperature profile, sound velocity, and other data collected from the COLUMBUS ISELIN using inverted echo sounder and CTD casts in the TOGA Area - Atlantic Ocean from 24 January 1987 to 07 October 1991 (NODC Accession 9200059)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile, sound velocity, and other data were collected using Inverted Echo Sounder (IES) and CTD casts from the COLUMBUS ISELIN in the TOGA Area -...

  5. Lidar measurements of the column CO2 mixing ratio made by NASA Goddard's CO2 Sounder during the NASA ASCENDS 2014 Airborne campaign.

    Science.gov (United States)

    Ramanathan, A. K.; Mao, J.; Abshire, J. B.; Kawa, S. R.

    2015-12-01

    Remote sensing measurements of CO2 from space can help improve our understanding of the carbon cycle and help constrain the global carbon budget. However, such measurements need to be sufficiently accurate to detect small (1 ppm) changes in the CO2 mixing ratio (XCO2) against a large background (~ 400 ppm). Satellite measurements of XCO2 using passive spectrometers, such as those from the Japanese GOSAT (Greenhouse gas Observing Satellite) and the NASA OCO-2 (Orbiting Carbon Observatory-2) are limited to daytime sunlit portions of the Earth and are susceptible to biases from clouds and aerosols. For this reason, NASA commissioned the formulation study of ASCENDS a space-based lidar mission. NASA Goddard Space Flight Center's CO2 Sounder lidar is one candidate approach for the ASCENDS mission. The NASA GSFC CO2 Sounder measures the CO2 mixing ratio using a pulsed multi-wavelength integrated path differential absorption (IPDA) approach. The CO2 Sounder has flown in the 2011, 2013 and 2014 ASCENDS airborne campaigns over the continental US, and has produced measurements in close agreement with in situ measurements of the CO2 column. In 2014, the CO2 Sounder upgraded its laser with a precision step-locked diode laser source to improve the lidar wavelength position accuracy. It also improved its optical receiver with a low-noise, high efficiency, HgCdTe avalanche photo diode detector. The combination of these two technologies enabled lidar XCO2 measurements with unprecedented accuracy. In this presentation, we show analysis from the ASCENDS 2014 field campaign, exploring: (1) Horizontal XCO2 gradients measured by the lidar, (2) Comparisons of lidar XCO2 measurements against the Parameterized Chemistry Transport Model (PCTM), and (3) Lidar column water vapor measurements using a HDO absorption line that occurs next to the CO2 absorption line. This can reduce the uncertainty in the dry air column used in XCO2 retrievals.

  6. Use of INSAT-3D sounder and imager radiances in the 4D-VAR data assimilation system and its implications in the analyses and forecasts

    Science.gov (United States)

    Indira Rani, S.; Taylor, Ruth; George, John P.; Rajagopal, E. N.

    2016-05-01

    INSAT-3D, the first Indian geostationary satellite with sounding capability, provides valuable information over India and the surrounding oceanic regions which are pivotal to Numerical Weather Prediction. In collaboration with UK Met Office, NCMRWF developed the assimilation capability of INSAT-3D Clear Sky Brightness Temperature (CSBT), both from the sounder and imager, in the 4D-Var assimilation system being used at NCMRWF. Out of the 18 sounder channels, radiances from 9 channels are selected for assimilation depending on relevance of the information in each channel. The first three high peaking channels, the CO2 absorption channels and the three water vapor channels (channel no. 10, 11, and 12) are assimilated both over land and Ocean, whereas the window channels (channel no. 6, 7, and 8) are assimilated only over the Ocean. Measured satellite radiances are compared with that from short range forecasts to monitor the data quality. This is based on the assumption that the observed satellite radiances are free from calibration errors and the short range forecast provided by NWP model is free from systematic errors. Innovations (Observation - Forecast) before and after the bias correction are indicative of how well the bias correction works. Since the biases vary with air-masses, time, scan angle and also due to instrument degradation, an accurate bias correction algorithm for the assimilation of INSAT-3D sounder radiance is important. This paper discusses the bias correction methods and other quality controls used for the selected INSAT-3D sounder channels and the impact of bias corrected radiance in the data assimilation system particularly over India and surrounding oceanic regions.

  7. Aura Microwave Limb Sounder Observations of Dynamics and Transport During the Record-Breaking 2009 Arctic Stratospheric Major Warming

    Science.gov (United States)

    Manney, Gloria L.; Schwartz, Michael J.; Krueger, Kirstin; Santee, Michelle L.; Pawson, Steven; Lee, Jae N.; Daffer, William H.; Fuller, Ryan A.; Livesey, Nathaniel J.

    2009-01-01

    A major stratospheric sudden warming (SSW) in January 2009 was the strongest and most prolonged on record. Aura Microwave Limb Sounder (MLS) observations are used to provide an overview of dynamics and transport during the 2009 SSW, and to compare with the intense, long-lasting SSW in January 2006. The Arctic polar vortex split during the 2009 SSW, whereas the 2006 SSW was a vortex displacement event. Winds reversed to easterly more rapidly and reverted to westerly more slowly in 2009 than in 2006. More mixing of trace gases out of the vortex during the decay of the vortex fragments, and less before the fulfillment of major SSW criteria, was seen in 2009 than in 2006; persistent well-defined fragments of vortex and anticyclone air were more prevalent in 2009. The 2009 SSW had a more profound impact on the lower stratosphere than any previously observed SSW, with no significant recovery of the vortex in that region. The stratopause breakdown and subsequent reformation at very high altitude, accompanied by enhanced descent into a rapidly strengthening upper stratospheric vortex, were similar in 2009 and 2006. Many differences between 2006 and 2009 appear to be related to the different character of the SSWs in the two years.

  8. Fast and Accurate Collocation of the Visible Infrared Imaging Radiometer Suite Measurements with Cross-Track Infrared Sounder

    Directory of Open Access Journals (Sweden)

    Likun Wang

    2016-01-01

    Full Text Available Given the fact that Cross-track Infrared Sounder (CrIS and the Visible Infrared Imaging Radiometer Suite (VIIRS are currently onboard the Suomi National Polar-orbiting Partnership (Suomi NPP satellite and will continue to be carried on the same platform as future Joint Polar Satellite System (JPSS satellites for the next decade, it is desirable to develop a fast and accurate collocation scheme to collocate VIIRS products and measurements with CrIS for applications that rely on combining measurements from two sensors such as inter-calibration, geolocation assessment, and cloud detection. In this study, an accurate and fast collocation method to collocate VIIRS measurements within CrIS instantaneous field of view (IFOV directly based on line-of-sight (LOS pointing vectors is developed and discussed in detail. We demonstrate that this method is not only accurate and precise from a mathematical perspective, but also easy to implement computationally. More importantly, with optimization, this method is very fast and efficient and thus can meet operational requirements. Finally, this collocation method can be extended to a wide variety of sensors on different satellite platforms.

  9. Land Surface Temperature and Emissivity Separation from Cross-Track Infrared Sounder Data with Atmospheric Reanalysis Data and ISSTES Algorithm

    Directory of Open Access Journals (Sweden)

    Yu-Ze Zhang

    2017-01-01

    Full Text Available The Cross-track Infrared Sounder (CrIS is one of the most advanced hyperspectral instruments and has been used for various atmospheric applications such as atmospheric retrievals and weather forecast modeling. However, because of the specific design purpose of CrIS, little attention has been paid to retrieving land surface parameters from CrIS data. To take full advantage of the rich spectral information in CrIS data to improve the land surface retrievals, particularly the acquisition of a continuous Land Surface Emissivity (LSE spectrum, this paper attempts to simultaneously retrieve a continuous LSE spectrum and the Land Surface Temperature (LST from CrIS data with the atmospheric reanalysis data and the Iterative Spectrally Smooth Temperature and Emissivity Separation (ISSTES algorithm. The results show that the accuracy of the retrieved LSEs and LST is comparable with the current land products. The overall differences of the LST and LSE retrievals are approximately 1.3 K and 1.48%, respectively. However, the LSEs in our study can be provided as a continuum spectrum instead of the single-channel values in traditional products. The retrieved LST and LSEs now can be better used to further analyze the surface properties or improve the retrieval of atmospheric parameters.

  10. Global and Regional Seasonal Variability of Mid-Tropospheric CO2 as Measured by the Atmospheric Infrared Sounder (AIRS)

    Science.gov (United States)

    Pagano, Thomas S.; Olsen, Edward T.; Nguyen, Hai

    2012-01-01

    The Atmospheric Infrared Sounder (AIRS) is a hyperspectral infrared instrument on the Earth Observing System (EOS) Aqua Spacecraft, launched on May 4, 2002 into a near polar sun-synchronous orbit. AIRS has 2378 infrared channels ranging from 3.7 ?m to 15.4 ?m and a 13.5 km footprint at nadir. AIRS, in conjunction with the Advanced Microwave Sounding Unit (AMSU), produces temperature profiles with 1K/km accuracy on a global scale, as well as water vapor profiles and trace gas amounts for CO2, CO, SO2, O3 and CH4. AIRS CO2 climatologies have been shown to be useful for identifying anomalies associated with geophysical events such as El Nino-Southern Oscillation or Madden-Julian oscillation. In this study, monthly representations of mid-tropospheric CO2 are constructed from 10 years of AIRS Version 5 monthly Level 3 data. We compare the AIRS mid-tropospheric CO2 representations to ground-based measurements from the Scripps and National Oceanic and Atmospheric Administration Climate Modeling and Diagnostics Laboratory (NOAA CMDL) ground networks to better understand the phase lag of the CO2 seasonal cycle between the surface and middle troposphere. Results show only a small phase lag in the tropics that grows to approximately two months in the northern latitudes.

  11. Mechanical design and qualification of IR filter mounts and filter wheel of INSAT-3D sounder for low temperature

    Science.gov (United States)

    Vora, A. P.; Rami, J. B.; Hait, A. K.; Dewan, C. P.; Subrahmanyam, D.; Kirankumar, A. S.

    2017-11-01

    Next generation Indian Meteorological Satellite will carry Sounder instrument having subsystem of filter wheel measuring Ø260mm and carrying 18 filters arranged in three concentric rings. These filters made from Germanium, are used to separate spectral channels in IR band. Filter wheel is required to be cooled to 214K and rotated at 600 rpm. This Paper discusses the challenges faced in mechanical design of the filter wheel, mainly filter mount design to protect brittle germanium filters from failure under stresses due to very low temperature, compactness of the wheel and casings for improved thermal efficiency, survival under vibration loads and material selection to keep it lighter in weight. Properties of Titanium, Kovar, Invar and Aluminium materials are considered for design. The mount has been designed to accommodate both thermal and dynamic loadings without introducing significant aberrations into the optics or incurring permanent alignment shifts. Detailed finite element analysis of mounts was carried out for stress verification. Results of the qualification tests are discussed for given temperature range of 100K and vibration loads of 12g in Sine and 11.8grms in Random at mount level. Results of the filter wheel qualification as mounted in Electro Optics Module (EOM) are also presented.

  12. Detection of Earth-rotation Doppler shift from Suomi National Polar-Orbiting Partnership Cross-Track Infrared Sounder.

    Science.gov (United States)

    Chen, Yong; Han, Yong; Weng, Fuzhong

    2013-09-01

    The Cross-Track Infrared Sounder (CrIS) on the Suomi National Polar-Orbiting Partnership Satellite is a Fourier transform spectrometer and provides a total of 1305 channels for sounding the atmosphere. Quantifying the CrIS spectral accuracy, which is directly related to radiometric accuracy, is crucial for improving its data assimilation in numerical weather prediction. In this study, a cross-correlation method is used for detecting the effect of Earth-rotation Doppler shift (ERDS) on CrIS observations. Based on a theoretical calculation, the ERDS can be as large as about 1.3 parts in 10(6) (ppm) near Earth's equator and at the satellite scan edge for a field of regard (FOR) of 1 or 30. The CrIS observations exhibit a relative Doppler shift as large as 2.6 ppm for a FOR pair of 1 and 30 near the equator. The variation of the ERDS with latitude and scan position detected from CrIS observations is similar to that derived theoretically, which indicates that the spectral stability of the CrIS instrument is very high. To accurately calibrate CrIS spectral accuracy, the ERDS effect should be removed. Since the ERDS is easily predictable, the Doppler shift is correctable in the CrIS spectra.

  13. Validation of Aura Microwave Limb Sounder O3 and CO Observations in the Upper Troposphere and Lower Stratosphere

    Science.gov (United States)

    Livesey, N. J.; Filipiak, M. J.; Froidevaux, L.; Read, W. G.; Lambert, A.; Santee, J. L.; Jiang, J. H.; Pumphrey, H. C.; Waters, J. W.; Cofield, R. E.; hide

    2008-01-01

    Global satellite observations of ozone and carbon monoxide from the Microwave Limb Sounder (MLS) on the EOS Aura spacecraft are discussed with emphasis on those observations in the 2 15 - 100 hPa region (the upper troposphere and lower stratosphere). The precision, resolution and accuracy of the data produced by the MLS "version 2.2" processing algorithms are discussed and quantified. O3 accuracy is estimated at approx.40 ppbv +5% (approx.20 ppbv +20% at 215 hPa) while the CO accuracy is estimated at approx.30 ppbv +30% for pressures of 147 hPa and less. Comparisons with expectations and other observations show good agreements for the O3 product, generally consistent with the systematic errors quoted above. In the case of COY a persistent factor of approx.2 high bias is seen at 215 hPa. However, the morphology is shown to be realistic, consistent with raw MLS radiance data, and useful for scientific study. The MLS CO data at higher altitudes are shown to be consistent with other observations.

  14. Recent divergences in stratospheric water vapor measurements by frost point hygrometers and the Aura Microwave Limb Sounder

    Science.gov (United States)

    Hurst, Dale F.; Read, William G.; Vömel, Holger; Selkirk, Henry B.; Rosenlof, Karen H.; Davis, Sean M.; Hall, Emrys G.; Jordan, Allen F.; Oltmans, Samuel J.

    2017-01-01

    Balloon-borne frost point hygrometers (FPs) and the Aura Microwave Limb Sounder (MLS) provide high-quality vertical profile measurements of water vapor in the upper troposphere and lower stratosphere (UTLS). A previous comparison of stratospheric water vapor measurements by FPs and MLS over three sites - Boulder, Colorado (40.0° N); Hilo, Hawaii (19.7° N); and Lauder, New Zealand (45.0° S) - from August 2004 through December 2012 not only demonstrated agreement better than 1% between 68 and 26 hPa but also exposed statistically significant biases of 2 to 10% at 83 and 100 hPa (Hurst et al., 2014). A simple linear regression analysis of the FP-MLS differences revealed no significant long-term drifts between the two instruments. Here we extend the drift comparison to mid-2015 and add two FP sites - Lindenberg, Germany (52.2° N), and San José, Costa Rica (10.0° N) - that employ FPs of different manufacture and calibration for their water vapor soundings. The extended comparison period reveals that stratospheric FP and MLS measurements over four of the five sites have diverged at rates of 0.03 to 0.07 ppmv year−1 (0.6 to 1.5% year−1) from ~2010 to mid-2015. These rates are similar in magnitude to the 30-year (1980–2010) average growth rate of stratospheric water vapor (~ 1% year−1) measured by FPs over Boulder (Hurst et al., 2011). By mid-2015, the FP–MLS differences at some sites were large enough to exceed the combined accuracy estimates of the FP and MLS measurements. PMID:28966694

  15. Impacts of field of view configuration of Cross-track Infrared Sounder on clear-sky observations.

    Science.gov (United States)

    Wang, Likun; Chen, Yong; Han, Yong

    2016-09-01

    Hyperspectral infrared radiance measurements from satellite sensors contain valuable information on atmospheric temperature and humidity profiles and greenhouse gases, and therefore are directly assimilated into numerical weather prediction (NWP) models as inputs for weather forecasting. However, data assimilations in current operational NWP models still mainly rely on cloud-free observations due to the challenge of simulating cloud-contaminated radiances when using hyperspectral radiances. The limited spatial coverage of the 3×3 field of views (FOVs) in one field of regard (FOR) (i.e., spatial gap among FOVs) as well as relatively large footprint size (14 km) in current Cross-track Infrared Sounder (CrIS) instruments limits the amount of clear-sky observations. This study explores the potential impacts of future CrIS FOV configuration (including FOV size and spatial coverage) on the amount of clear-sky observations by simulation experiments. The radiance measurements and cloud mask products (VCM) from the Visible Infrared Imager Radiometer Suite (VIIRS) are used to simulate CrIS clear-sky observation under different FOV configurations. The results indicate that, given the same FOV coverage (e.g., 3×3), the percentage of clear-sky FOVs and the percentage of clear-sky FORs (that contain at least one clear-sky FOV) both increase as the FOV size decreases. In particular, if the CrIS FOV size were reduced from 14 km to 7 km, the percentage of clear-sky FOVs increases from 9.02% to 13.51% and the percentage of clear-sky FORs increases from 18.24% to 27.51%. Given the same FOV size but with increasing FOV coverage in each FOR, the clear-sky FOV observations increases proportionally with the increasing sampling FOVs. Both reducing FOV size and increasing FOV coverage can result in more clear-sky FORs, which benefit data utilization of NWP data assimilation.

  16. Bias Correction for Retrieval of Atmospheric Parameters from the Microwave Humidity and Temperature Sounder Onboard the Fengyun-3C Satellite

    Directory of Open Access Journals (Sweden)

    Qiurui He

    2016-12-01

    Full Text Available The microwave humidity and temperature sounder (MWHTS on the Fengyun (FY-3C satellite measures the outgoing radiance from the Earth’s surface and atmospheric constituents. MWHTS, which makes measurements in the isolated oxygen absorption line near 118 GHz and the vicinity of the strong water vapor absorption line around 183 GHz, can provide fine vertical distribution structures of both atmospheric humidity and temperature. However, in order to obtain the accurate soundings of humidity and temperature by physical retrieval methods, the bias between the observed and simulated radiance calculated by the radiative transfer model from the background or first guess profiles must be corrected. In this study, two bias correction methods are developed through the correlation analysis between MWHTS measurements and air mass identified by the first guess profiles of the physical inversion; one is the linear regression correction (LRC, and the other is the neural network correction (NNC, representing the linear and nonlinear relationships between MWHTS measurements and air mass, respectively. The correction methods have been applied to MWHTS observed brightness temperatures over the geographic area (180° W–180° E, 60° S–60° N. The corrected results are evaluated by the probability density function of the differences between corrected observations and simulated values and the root mean square errors (RMSE with respect to simulated observations. The numerical results show that the NNC method has better performance, especially in MWHTS Channels 1 and 7–9, whose peak weight function heights are close to the surface. In order to assess the effects of bias correction methods proposed in this study on the retrieval accuracy, a one-dimensional variational system was built and applied to the MWHTS brightness temperatures to estimate the atmospheric temperature and humidity profiles. The retrieval results also show that NNC has better performance. An

  17. Split-beam echo sounder observations of natural methane seep variability in the northern Gulf of Mexico

    Science.gov (United States)

    Jerram, Kevin; Weber, Thomas C.; Beaudoin, Jonathan

    2015-03-01

    A method for positioning and characterizing plumes of bubbles from marine gas seeps using an 18 kHz scientific split-beam echo sounder (SBES) was developed and applied to acoustic observations of plumes of presumed methane gas bubbles originating at approximately 1400 m depth in the northern Gulf of Mexico. A total of 161 plume observations from 27 repeat surveys were grouped by proximity into 35 clusters of gas vent positions on the seafloor. Profiles of acoustic target strength per vertical meter of plume height were calculated with compensation for both the SBES beam pattern and the geometry of plume ensonification. These profiles were used as indicators of the relative fluxes and fates of gas bubbles acoustically observable at 18 kHz and showed significant variability between repeat observations at time intervals of 1 h-7.5 months. Active gas venting was observed during approximately one third of the survey passes at each cluster. While gas flux is not estimated directly in this study owing to lack of bubble size distribution data, repeat surveys at active seep sites showed variations in acoustic response that suggest relative changes in gas flux of up to 1 order of magnitude over time scales of hours. The minimum depths of acoustic plume observations at 18 kHz averaged 875 m and frequently coincided with increased amplitudes of acoustic returns in layers of biological scatterers, suggesting acoustic masking of the gas bubble plumes in these layers. Minimum plume depth estimates were limited by the SBES field of view in only five instances.

  18. The Impact of Cross-track Infrared Sounder (CrIS) Cloud-Cleared Radiances on Hurricane Joaquin (2015) and Matthew (2016) Forecasts

    Science.gov (United States)

    Wang, Pei; Li, Jun; Li, Zhenglong; Lim, Agnes H. N.; Li, Jinlong; Schmit, Timothy J.; Goldberg, Mitchell D.

    2017-12-01

    Hyperspectral infrared (IR) sounders provide high vertical resolution atmospheric sounding information that can improve the forecast skill in numerical weather prediction. Commonly, only clear radiances are assimilated, because IR sounder observations are highly affected by clouds. A cloud-clearing (CC) technique, which removes the cloud effects from an IR cloudy field of view (FOV) and derives the cloud-cleared radiances (CCRs) or clear-sky equivalent radiances, can be an alternative yet effective way to take advantage of the thermodynamic information from cloudy skies in data assimilation. This study develops a Visible Infrared Imaging Radiometer Suite (VIIRS)-based CC method for deriving Cross-track Infrared Sounder (CrIS) CCRs under partially cloudy conditions. Due to the lack of absorption bands on VIIRS, two important quality control steps are implemented in the CC process. Validation using VIIRS clear radiances indicates that the CC method can effectively obtain the CrIS CCRs for FOVs with partial cloud cover. To compare the impacts from assimilation of CrIS original radiances and CCRs, three experiments are carried out on two storm cases, Hurricane Joaquin (2015) and Hurricane Matthew (2016), using Gridpoint Statistical Interpolation assimilation system and Weather Research and Forecasting-Advanced Research Version models. At the analysis time, more CrIS observations are assimilated when using CrIS CCRs than with CrIS original radiances. Comparing temperature, specific humidity, and U/V winds with radiosondes indicates that the data impacts are growing larger with longer time forecasts (beyond 72 h forecast). Hurricane track forecasts also show improvements from the assimilation of CrIS CCRs due to better weather system forecasts. The impacts of CCRs on intensity are basically neutral with mixed positive and negative results.

  19. Impact of Error in Atmospheric State on Column CO2 Retrievals from a Laser CO2 Sounder

    Science.gov (United States)

    Mao, J.; Ramanathan, A. K.; Abshire, J. B.; Kawa, S. R.

    2016-12-01

    NASA Goddard is developing an integrated-path, differential absorption (IPDA) lidar approach to measure global atmospheric column CO2 concentrations from space as a candidate for NASA's Active Sensing of CO2 Emissions over Nights, Days, and Seasons (ASCENDS) mission. This pulsed laser approach uses a step-locked laser diode source and a high-efficiency detector to measure atmospheric column CO2 absorption at multiple wavelengths across a CO2 line centered at 1572.335 nm with minimum temperature sensitivity. Atmospheric states from a global numerical forecast and data assimilation model are used as ancillary data to produce the best retrievals of column-averaged CO2 mixing ratio with regards to dry air. Retrieval error, both bias and random error, depends on uncertainties of atmospheric states for atmospheric radiative transfer calculations that are then used to fit measured CO2 absorption line shape for retrievals. Temperature data uncertainty, for example, can modify air density as well as absorption line intensity and line shape, which could cause significant error in radiative transfer calculations and then in column CO2mixing ratio retrievals. Uncertainty in atmospheric pressure and water vapor could also further increase retrieval error. We use atmospheric temperature profiles from Atmospheric InfraRed Sounder retrievals and the European Center for Medium range Weather Forecasting Model to assess temperature impact on spaceborne measurement of ASCENDS using our Goddard IPDA approach. We find the temperature differences produce a small impact on optical depth measurements on our CO2 line. Uncertainty in the atmospheric surface pressure could cause greater impact, implying a requirement for accurate dry air column density information in addition to laser ranging capability. We use data from the 2014 and 2016 ASCENDS airborne science campaigns to evaluate the atmospheric impact on our column CO2 concentration retrievals using the Goddard GEOS-5 meteorological

  20. Hyperspectral Microwave Atmospheric Sounder (HyMas) - New Capability in the CoSMIR-CoSSIR Scanhead

    Science.gov (United States)

    Hilliard, L. M.; Racette, P. E.; Blackwell, W.; Galbraith, C.; Thompson, E.

    2015-01-01

    Lincoln Laboratory and NASA's Goddard Space Flight Center have teamed to re-use an existing instrument platform, the CoSMIRCoSSIR system for atmospheric sounding, to develop a new capability in hyperspectral filtering, data collection, and display. The volume of the scanhead accomodated an intermediate frequency processor(IFP), that provides the filtering and digitization of the raw data and the interoperable remote component (IRC) adapted to CoSMIR, CoSSIR, and HyMAS that stores and archives the data with time tagged calibration and navigation data.The first element of the work is the demonstration of a hyperspectral microwave receiver subsystem that was recently shown using a comprehensive simulation study to yield performance that substantially exceeds current state-of-the-art. Hyperspectral microwave sounders with 100 channels offer temperature and humidity sounding improvements similar to those obtained when infrared sensors became hyperspectral, but with the relative insensitivity to clouds that characterizes microwave sensors. Hyperspectral microwave operation is achieved using independent RF antennareceiver arrays that sample the same areavolume of the Earths surfaceatmosphere at slightly different frequencies and therefore synthesize a set of dense, finely spaced vertical weighting functions. The second, enabling element of the proposal is the development of a compact 52-channel Intermediate Frequency processor module. A principal challenge in the development of a hyperspectral microwave system is the size of the IF filter bank required for channelization. Large bandwidths are simultaneously processed, thus complicating the use of digital back-ends with associated high complexities, costs, and power requirements. Our approach involves passive filters implemented using low-temperature co-fired ceramic (LTCC) technology to achieve an ultra-compact module that can be easily integrated with existing RF front-end technology. This IF processor is universally

  1. Atmospheric Infrared Sounder on NASA's Aqua Satellite: Applications for Volcano Rapid Response, Influenza Outbreak Prediction, and Drought Onset Prediction

    Science.gov (United States)

    Ray, S. E.; Fetzer, E. J.; Lambrigtsen, B.; Olsen, E. T.; Licata, S. J.; Hall, J. R.; Penteado, P. F.; Realmuto, V. J.; Thrastarson, H. T.; Teixeira, J.; Granger, S. L.; Behrangi, A.; Farahmand, A.

    2017-12-01

    The Atmospheric Infrared Sounder (AIRS) has been returning daily global observations of Earth's atmospheric constituents and properties since 2002. With its 15-year data record and near real-time capability, AIRS data are being used in the development of applications that fall within many of the NASA Applied Science focus areas. An automated alert system for volcanic plumes has been developed that triggers on threshold breaches of SO2, ash and dust in granules of AIRS data. The system generates a suite of granule-scale maps that depict both plume and clouds, all accessible from the AIRS web site. Alerts are sent to a curated list of volcano community members, and links to views in NASA Worldview and Google Earth are also available. Seasonal influenza epidemics are major public health concern with millions of cases of severe illness and large economic impact. Recent studies have highlighted the role of absolute or specific humidity as a likely player in the seasonal nature of these outbreaks. A quasi-operational influenza outbreak prediction system has been developed based on the SIRS model which uses AIRS and NCEP humidity data, Center for Disease Control reports on flu and flu-like illnesses, and results from Google Flu Trends. Work is underway to account for diffusion (spatial) in addition to the temporal spreading of influenza. The US Drought Monitor (USDM) is generated weekly by the National Drought Mitigation Center (NDMC) and is used by policymakers for drought decision-making. AIRS data have demonstrated utility in monitoring the development and detection of meteorological drought with both AIRS-derived standardized vapor pressure deficit and standardized relative humidity, showing early detection lead times of up to two months. An agreement was secured with the NDMC to begin a trial period using AIRS products in the production of the USDM, and in July of 2017 the operational delivery of weekly CONUS AIRS images of Relative Humidity, Surface Air Temperature

  2. ESA `Huygens and Mars Express' science highlights - call to press

    Science.gov (United States)

    2005-11-01

    'Aéronomie/CNRS, France 16:40 - Bruno Bezard, Co-Investigator, Descent Imager/Spectral Radiometer, Laboratoire d'études spatiales et d'instrumentation en astrophysique, Observatoire de Paris, France 16:45 - Jonathan Lunine, Interdisciplinary Scientist, Titan surface-atmosphere interactions, LPL/U, Arizona (USA) and INAF/IFSI, Rome (Italy) 16:55 - Questions and AnswersV 17:05 - Coffee break 17:10 - Mars Express: results in the overall context of Martian science, Agustin Chicarro, ESA Mars Express Project Scientist 17:15 - Giovanni Picardi, MARSIS Radar Principal Investigator, University of Rome La Sapienza, Italy Jeffrey Plaut, MARSIS Co-Principal Investigator, NASA/JPL, USA 17:25 - Martin Pätzold, Mars Radio Science Experiment, Principal Investigator, Universität Koln, Cologne, Germany 17:30 - Jean-Pierre Bibring, OMEGA Principal Investigator, Institut d’Astrophysique spatiale, Orsay, France 17:40 - Gerhard Neukum, HRSC Camera Principal Investigator, Freie Universität Berlin, Germany 17:45 - Questions and Answers 17:55 - Interview opportunities

  3. Inter-Comparison of S-NPP VIIRS and Aqua MODIS Thermal Emissive Bands Using Hyperspectral Infrared Sounder Measurements as a Transfer Reference

    Directory of Open Access Journals (Sweden)

    Yonghong Li

    2016-01-01

    Full Text Available This paper compares the calibration consistency of the spectrally-matched thermal emissive bands (TEB between the Suomi National Polar-orbiting Partnership (S-NPP Visible Infrared Imaging Radiometer Suite (VIIRS and the Aqua Moderate Resolution Imaging Spectroradiometer (MODIS, using observations from their simultaneous nadir overpasses (SNO. Nearly-simultaneous hyperspectral measurements from the Aqua Atmospheric Infrared Sounder(AIRS and the S-NPP Cross-track Infrared Sounder (CrIS are used to account for existing spectral response differences between MODIS and VIIRS TEB. The comparison uses VIIRS Sensor Data Records (SDR in MODIS five-minute granule format provided by the NASA Land Product and Evaluation and Test Element (PEATE and Aqua MODIS Collection 6 Level 1 B (L1B products. Each AIRS footprint of 13.5 km (or CrIS field of view of 14 km is co-located with multiple MODIS (or VIIRS pixels. The corresponding AIRS- and CrIS-simulated MODIS and VIIRS radiances are derived by convolutions based on sensor-dependent relative spectral response (RSR functions. The VIIRS and MODIS TEB calibration consistency is evaluated and the two sensors agreed within 0.2 K in brightness temperature. Additional factors affecting the comparison such as geolocation and atmospheric water vapor content are also discussed in this paper.

  4. Bathymetric surveys at highway bridges crossing the Missouri River in Kansas City, Missouri, using a multibeam echo sounder, 2010

    Science.gov (United States)

    Huizinga, Richard J.

    2010-01-01

    Bathymetric surveys were conducted by the U.S. Geological Survey, in cooperation with the Missouri Department of Transportation, on the Missouri River in the vicinity of nine bridges at seven highway crossings in Kansas City, Missouri, in March 2010. A multibeam echo sounder mapping system was used to obtain channel-bed elevations for river reaches that ranged from 1,640 to 1,800 feet long and extending from bank to bank in the main channel of the Missouri River. These bathymetric scans will be used by the Missouri Department of Transportation to assess the condition of the bridges for stability and integrity with respect to bridge scour. Bathymetric data were collected around every pier that was in water, except those at the edge of the water or in extremely shallow water, and one pier that was surrounded by a large debris raft. A scour hole was present at every pier for which bathymetric data could be obtained. The scour hole at a given pier varied in depth relative to the upstream channel bed, depending on the presence and proximity of other piers or structures upstream from the pier in question. The surveyed channel bed at the bottom of the scour hole was between 5 and 50 feet above bedrock. At bridges with drilled shaft foundations, generally there was exposure of the upstream end of the seal course and the seal course often was undermined to some extent. At one site, the minimum elevation of the scour hole at the main channel pier was about 10 feet below the bottom of the seal course, and the sides of the drilled shafts were evident in a point cloud visualization of the data at that pier. However, drilled shafts generally penetrated 20 feet into bedrock. Undermining of the seal course was evident as a sonic 'shadow' in the point cloud visualization of several of the piers. Large dune features were present in the channel at nearly all of the surveyed sites, as were numerous smaller dunes and many ripples. Several of the sites are on or near bends in the river

  5. Demonstrating the Operational Value of Atmospheric Infrared Sounder (AIRS) Retrieved Profiles in the Pre-Convective Environment

    Science.gov (United States)

    Kozlowski, Danielle M.; Zavodsky, T.; Jedloved, Gary J.

    2011-01-01

    The Short-term Prediction Research and Transition Center (SPoRT) is a collaborative partnership between NASA and operational forecasting partners, including a number of National Weather Service offices. SPoRT provides real-time NASA products and capabilities to its partners to address specific operational forecast challenges. One operational forecast challenge is forecasting convective weather in data-void regions such as large bodies of water (e.g. Gulf of Mexico). To address this forecast challenge, SPoRT produces a twice-daily three-dimensional analysis that blends a model first-guess from the Advanced Research Weather Research and Forecasting (WRF-ARW) model with retrieved profiles from the Atmospheric Infrared Sounder (AIRS) -- a hyperspectral sounding instrument aboard NASA's Aqua satellite that provides temperature and moisture profiles of the atmosphere. AIRS profiles are unique in that they give a three dimensional view of the atmosphere that is not available through the current rawinsonde network. AIRS has two overpass swaths across North America each day, one valid in the 0700-0900 UTC timeframe and the other in the 1900-2100 UTC timeframe. This is helpful because the rawinsonde network only has data from 0000 UTC and 1200 UTC at specific land-based locations. Comparing the AIRS analysis product with control analyses that include no AIRS data demonstrates the value of the retrieved profiles to situational awareness for the pre-convective (and convective) environment. In an attempt to verify that the AIRS analysis was a good representation of the vertical structure of the atmosphere, both the AIRS and control analyses are compared to a Rapid Update Cycle (RUC) analysis used by operational forecasters. Using guidance from operational forecasters, convective available potential energy (CAPE) was determined to be a vital variable in making convective forecasts and is used herein to demonstrate the utility of the AIRS profiles in changing the vertical

  6. Definition and preliminary design of the LAWS (Laser Atmospheric Wind Sounder). Volume 1, phase 2: Executive summary

    Science.gov (United States)

    1992-01-01

    The objective of phase 1 of the LAWS study was to define and perform a preliminary design for the Laser Atmospheric Wind Sounder (LAWS) instrument. The definition phase consisted of identifying realistic concepts for LAWS and analyzing them in sufficient detail to be able to choose the most promising one for the LAWS application. System and subsystem configurations were then developed for the chosen concept. The concept and subsequent configurations were to be compatible with two prospective platforms--the Japanese Polar Orbiting Platform (JPOP) and as an attached payload on the Space Station Freedom. After a thorough and objective concept selection process, we chose a heterodyne detection Doppler lidar using a CO2 laser transmitter operating at 9.1 microns over a 2.1 micron solid state system. The choice of the CO2 approach over solid-state reflects the advanced state of development of CO2 lasers, its maturity in ground-based systems and the eased subsystem requirements associated with the longer wavelength. The CO2 lidar concept was then analyzed in detail to arrive at a configuration for the instrument and its major subsystems. Our approach throughout the configuration design was to take a systems perspective and trade requirements between subsystems, wherever possible, to arrive at configurations which made maximum use of existing, proven technology or relatively straightforward extensions to existing technology to reduce risk and cost. At the conclusion of Phase 1 we arrived at a configuration for LAWS which meets the performance requirements, yet which is less complex than previous designs of space-based wind sensors (e.g. Windsat), employs lightweight technologies to meet its weight goals (less than 800kg) and sufficiently flexible to offer various operational scenarios with power requirements from about 2 kW to 3 kW. The Phase 1 Final Report was released in March 1990. The 21-month Phase 2 began in October 1990. The requirement to accommodate LAWS as an

  7. New isostatic mounting concept for a space born Three Mirror Anastigmat (TMA) on the Meteosat Third Generation Infrared Sounder Instrument (MTG-IRS)

    Science.gov (United States)

    Freudling, Maximilian; Klammer, Jesko; Lousberg, Gregory; Schumacher, Jean-Marc; Körner, Christian

    2016-07-01

    A novel isostatic mounting concept for a space born TMA of the Meteosat Third Generation Infrared Sounder is presented. The telescope is based on a light-weight all-aluminium design. The mounting concept accommodates the telescope onto a Carbon-Fiber-Reinforced Polymer (CRFP) structure. This design copes with the high CTE mismatch without introducing high stresses into the telescope structure. Furthermore a Line of Sight stability of a few microrads under geostationary orbit conditions is provided. The design operates with full performance at a temperature 20K below the temperature of the CFRP structure and 20K below the integration temperature. The mounting will sustain launch loads of 47g. This paper will provide the design of the Back Telescope Assembly (BTA) isostatic mounting and will summarise the consolidated technical baseline reached following a successful Preliminary Design Review (PDR).

  8. The Atmospheric Infrared Sounder (AIRS) on the NASA Aqua Spacecraft: A General Remote Sensing Tool for Understanding Atmospheric Structure, Dynamics and Composition

    Science.gov (United States)

    Pagano, Thomas S.; Chahine, Moustafa T.; Fetzer, Eric J.

    2010-01-01

    The Atmospheric Infrared Sounder (AIRS) on the EOS Aqua Spacecraft was launched on May 4, 2002. Early in the mission, the AIRS instrument demonstrated its value to the weather forecasting community with better than 6 hours of improvement on the 5 day forecast. Now with over eight years of consistent and stable data from AIRS, scientists are able to examine processes governing weather and climate and look at seasonal and interannual trends from the AIRSdata with high statistical confidence. Naturally, long-term climate trends require a longer data set, but indications are that the Aqua spacecraft and the AIRS instrument should last beyond 2018. This paper briefly describes the AIRS data products and presents some of the most significant findings involving the use of AIRS data in the areas of weather forecast improvement, climate processes and model validation, cloud and polar processes, and atmospheric composition (chemistry and dust).

  9. Improved VAS regression soundings of mesoscale temperature features observed during the atmospheric variability experiment on 6 March 1982. [VISSR Atmospheric Sounder

    Science.gov (United States)

    Chesters, Dennis; Keyser, Dennis A.; Larko, David E.; Uccellini, Louis W.

    1988-01-01

    In 1982, the VISSR Atmospheric Sounder (VAS) on the GOES satellite performed the Atmospheric Variability Experiment (AVE) to verify VAS's mesoscale-sounding capabilities. Attention is given to the AVE network in the late afternoon of March 6, 1982, after a winter storm had passed over Texas, in order to ascertain whether such temperature profile deviations from the average lapse rate as a midlevel cold pool (which should decrease the brightness of several IR channels) can be retrieved from VAS radiances. Two simple enhancements are introduced: the regression matrix is calculated using the AVE asynoptic radiosondes launched from NWS sites in the region, and a change of the statistical conditioning factor from the conservative 10/1 SNR to a more optimistic 100/1 for those VAS channels that are more sensitive to tropospheric temperature.

  10. Comparison with oblique sounder data of high-latitude h-f propagation predictions from Radar C and Ambscom computer programs. Professional paper for May 1987

    Energy Technology Data Exchange (ETDEWEB)

    Dave, N.

    1987-11-01

    A study was done using two HF propagation prediction programs - Radar C and AMBCOM - to determine how well they predict median values of oblique sounder data of maximum observed frequencies (MOF) at high latitudes. The main differences between RADAR C and AMBCOM are the inclusion in the latter of high-latitude ionosphere and auroral absorption models, as well as a more-sophisticated and accurate ray-tracing scheme. The data for the Winnipeg-Resolute Bay corresponds to high sunspot number, while the others correspond to low sunspot number. Hence, this study provides information on the performance of the two programs for various high-latitude paths at both high and low sunspot number. AMBCOM was found to give generally better agreement with the above data than did RADAR C. Comparison of details of model predictions from the two computer programs for the above data-base is used to form an understanding of this improvement in prediction capability.

  11. Trends in South American biomass burning detected with the GOES visible infrared spin scan radiometer atmospheric sounder from 1983 to 1991

    Energy Technology Data Exchange (ETDEWEB)

    Prins, E.M.; Menzel, W.P. [Cooperative Inst. for Meteorological Satellite Studies, Madison, WI (United States)]|[NOAA, Madison, WI (United States)

    1994-08-01

    Previous work demonstrated the ability to manually detect subpixel fire activity in selected areas of the selva and cerrado regions in South America with shortwave and longwave infrared data available from the Geostationary Operational Environmental Satellite (GOES) visible infrared spin scan radiometer atmospheric sounder (VAS). This paper presents the GOES VAS automated biomass-burning algorithm (ABBA) which was developed to determine basin-wide trends in fire activity in South America utilizing the GOES VAS archive. Comparisons between the manual and automated techniques revealed that overall, the ABBA proved to be more consistent in identifying fires and better suited for trend analysis. The automated algorithm was applied daily to a study area extending from 5 deg S to 15 deg S and from 45 deg W to 70 deg W for 2 weeks at the peak of the burning seasons in South America in 1983, 1988, 1989, and 1991 in an effort to measure the areal extent of burning in South American during the past decade and to provide additional insight into the diurnal signature in satellite detection of biomass-burning activities. The expansion of the regions of burning are readily detected in a comparison of these 4 years. From 1983 to 1991 the amount of burning detected by the GOES VAS ABBA during these 2-week periods nearly doubled in the selva and mixed regions and tripled in the cerrado. Diurnal analyses confirmed earlier results indicating that the optimum time to monitor biomass burning is around 1530 UTC.

  12. Large Scale Variability of Mid-Tropospheric Carbon Dioxide as Observed by the Atmospheric Infrared Sounder (AIRS) on the NASA EOS Aqua Platform

    Science.gov (United States)

    Pagano, Thomas S.; Olsen, Edward T.

    2012-01-01

    The Atmospheric Infrared Sounder (AIRS) is a hyperspectral infrared instrument on the EOS Aqua Spacecraft, launched on May 4, 2002. AIRS has 2378 infrared channels ranging from 3.7 microns to 15.4 microns and a 13.5 km footprint. AIRS, in conjunction with the Advanced Microwave Sounding Unit (AMSU), produces temperature profiles with 1K/km accuracy, water vapor profiles (20%/2km), infrared cloud height and fraction, and trace gas amounts for CO2, CO, SO2, O3 and CH4 in the mid to upper troposphere. AIRS wide swath(cedilla) +/-49.5 deg , enables daily global daily coverage for over 95% of the Earth's surface. AIRS data are used for weather forecasting, validating climate model distribution and processes, and observing long-range transport of greenhouse gases. In this study, we examine the large scale and regional horizontal variability in the AIRS Mid-tropospheric Carbon Dioxide product as a function of season and associate the observed variability with known atmospheric transport processes, and sources and sinks of CO2.

  13. Comparison with oblique sounder data of high-latitude HF propagation predictions from RADAR C and AMBCOM computer programs. Professional Paper for October 1987

    Energy Technology Data Exchange (ETDEWEB)

    Dave, N.

    1988-06-01

    A study was done using two High Frequency (HF) propagation prediction programs - RADAR C and AMBCOM - to determine how well they predict median values of oblique sounder data of maximum observed frequencies (MOF) at high latitudes. The main differences between RADAR C and AMBCOM are the inclusion in the latter of high-latitude ionosphere and auroral absorption models, as well as a more-sophisticated and accurate ray-tracing scheme. The data used for comparison are taken for the Winnipeg-Resolute Bay path in the year 1959 and for the Andoya-Ft. Monmouth and Andoya-College paths in 1964. The data for the Winnipeg-Resolute Bay corresponds to high sunspot number, while the others correspond to low sunspot number. Hence, the study provides information on the performance of the two programs for various high-latitude paths at both high and low sunspot number. AMBCOM was found to give generally better agreement with the above data than did RADAR C. Comparison of details of model predictions from the two computer programs for the above data-base is used to form an understanding of this improvement in prediction capability.

  14. Trends in South American biomass burning detected with the GOES visible infrared spin scan radiometer atmospheric sounder from 1983 to 1991

    Science.gov (United States)

    Prins, Elaine M.; Menzel, W. Paul

    1994-08-01

    In an effort to get a better understanding of the extent and patterns of burning in South America, geostationary satellite data have been used to monitor active fires. Previous work demonstrated the ability to manually detect subpixel fire activity in selected areas of the selva and cerrado regions in South America with shortwave and longwave infrared data available from the Geostationary Operational Environmental Satellite (GOES) visible infrared spin scan radiometer atmospheric sounder (VAS) This paper presents the GOES VAS automated biomass-burning algorithm (ABBA) which was developed to determine basin-wide trends in fire activity in South America utilizing the GOES VAS archive. Comparisons between the manual and the automated techniques revealed that overall, the ABBA proved to be more consistent in identifying fires and better suited for trend analysis. The automated algorithm was applied daily to a study area extending from 5°S to 15°S and from 45°W to 70°W for 2 weeks at the peak of the burning seasons in South America in 1983, 1988, 1989, and 1991 in an effort to measure the areal extent of burning in South America during the past decade and to provide additional insight into the diurnal signature in satellite detection of biomass-burning activities. The expansion of the regions of burning are readily detected in a comparison of these 4 years. From 1983 to 1991 the amount of burning detected by the GOES VAS ABBA during these 2-week periods nearly doubled in the selva and mixed regions and tripled in the cerrado. Diurnal analyses confirmed earlier results indicating that the optimum time to monitor biomass burning is around 1530 UTC.

  15. A comprehensive overview of the climatological composition of the Asian summer monsoon anticyclone based on 10 years of Aura Microwave Limb Sounder measurements

    Science.gov (United States)

    Santee, M. L.; Manney, G. L.; Livesey, N. J.; Schwartz, M. J.; Neu, J. L.; Read, W. G.

    2017-05-01

    Intense deep convection associated with the Asian summer monsoon (ASM) lofts surface pollutants to the upper troposphere/lower stratosphere (UTLS), where strong winds and long chemical lifetimes allow intercontinental transport, affecting atmospheric composition around the globe. The Aura Microwave Limb Sounder (MLS), launched in 2004, makes simultaneous colocated measurements of trace gases and cloud ice water content (a proxy for deep convection) in the UTLS on a daily basis. Here we exploit the dense spatial and temporal coverage, long-term data record, extensive measurement suite, and insensitivity to aerosol and most clouds of Aura MLS to characterize the climatological (2005-2014) composition of the ASM anticyclone throughout its annual life cycle. We use version 4 MLS data to quantify spatial and temporal variations in both tropospheric (H2O, CO, CH3Cl, CH3CN, CH3OH) and stratospheric (O3, HNO3, HCl) tracers on four potential temperature surfaces (350-410 K). Inside the mature anticyclone, all species exhibit substantial changes, not only from their premonsoon distributions in the ASM region but also from their summertime distributions in the rest of the hemisphere. Different tracers exhibit dissimilar seasonal evolution, and the exact location and timing of their extreme values vary. Although individual aspects of the anticyclone have been described previously, we present a uniquely comprehensive overview of the climatological seasonal evolution of the ASM and its impact on UTLS composition. This work provides valuable context for planned in situ measurements as well as a benchmark for model evaluation and future investigations of interannual variability and long-term changes in monsoon processes.

  16. GeoMEx: Geographic Information System (GIS) Prototype for Mars Express Data

    Science.gov (United States)

    Manaud, N.; Frigeri, A.; Ivanov, A. B.

    2013-09-01

    As of today almost a decade of observational data have been returned by the multidisciplinary instruments on-board the ESA's Mars Express spacecraft. All data are archived into the ESA's Planetary Science Archive (PSA), which is the central repository for all ESA's Solar System missions [1]. Data users can perform advanced queries and retrieve data from the PSA using graphical and map-based search interfaces, or via direct FTP download [2]. However the PSA still offers limited geometrical search and visualisation capabilities that are essential for scientists to identify their data of interest. A former study has shown [3] that this limitation is mostly due to the fact that (1) only a subset of the instruments observations geometry information has been modeled and ingested into the PSA, and (2) that the access to that information from GIS software is impossible without going through a cumbersome and undocumented process. With the increasing number of Mars GIS data sets available to the community [4], GIS software have become invaluable tools for researchers to capture, manage, visualise, and analyse data from various sources. Although Mars Express surface imaging data are natural candidates for use in a GIS environment, other non-imaging instruments data (subsurface, atmosphere, plasma) integration is being investigated [5]. The objective of this work is to develop a GIS prototype that will integrate all the Mars Express instruments observations geometry information into a spatial database that can be accessed from external GIS software using standard WMS and WFS protocols. We will firstly focus on the integration of surface and subsurface instruments data (HRSC, OMEGA, MARSIS). In addition to the geometry information, base and context maps of Mars derived from surface mapping instruments data will also be ingested into the system. The system back-end architecture will be implemented using open-source GIS frameworks: PostgreSQL/PostGIS for the database, and Map

  17. Empirical Characterization of Unconstrained Tape Spring Deployment Dynamics

    Science.gov (United States)

    2012-03-22

    for CubeSats [13]). All of these designs are stowed compactly during launch, then deployed into larger shapes for use on orbit. Beyond these...for commercial off the shelf (COTS) solutions to supply them for CubeSats [13] The best known case may be MARSIS, which is a radar sounding experiment...on the ESA Mars Express spacecraft. Marsis is notable for a boom deployment issue caused by thermal conditions which was subsequently solved with no

  18. Gene expression

    International Nuclear Information System (INIS)

    Hildebrand, C.E.; Crawford, B.D.; Walters, R.A.; Enger, M.D.

    1983-01-01

    We prepared probes for isolating functional pieces of the metallothionein locus. The probes enabled a variety of experiments, eventually revealing two mechanisms for metallothionein gene expression, the order of the DNA coding units at the locus, and the location of the gene site in its chromosome. Once the switch regulating metallothionein synthesis was located, it could be joined by recombinant DNA methods to other, unrelated genes, then reintroduced into cells by gene-transfer techniques. The expression of these recombinant genes could then be induced by exposing the cells to Zn 2+ or Cd 2+ . We would thus take advantage of the clearly defined switching properties of the metallothionein gene to manipulate the expression of other, perhaps normally constitutive, genes. Already, despite an incomplete understanding of how the regulatory switch of the metallothionein locus operates, such experiments have been performed successfully

  19. Dayside ionosphere of Mars: Empirical model based on data from the MARSIS instrument

    Czech Academy of Sciences Publication Activity Database

    Němec, F.; Morgan, D. D.; Gurnett, D. A.; Duru, F.; Truhlík, Vladimír

    2011-01-01

    Roč. 116, - (2011), E07003/1-E07003/14 ISSN 0148-0227 Institutional research plan: CEZ:AV0Z30420517 Keywords : RADIO OCCULTATION MEASUREMENTS * GLOBAL SURVEYOR OBSERVATIONS * MARTIAN IONOSPHERE Subject RIV: BN - Astronomy, Celestial Mechanics, Astrophysics Impact factor: 3.021, year: 2011 http://www.agu.org/pubs/crossref/2011/2010JE003789.shtml

  20. Processing and Analysis of Polarimetric Ship Signatures from MARSIE: Report on Results for Polar Epsilon

    Science.gov (United States)

    2006-10-01

    observations de la surface équivalente radar de navires cibles pour les canaux de copolarisation et de polarisation croisée, la réduction de la...motion, environmental conditions, etc. on the observed polarimetric signatures; • The differences in the elemental scatterer distributions among the...calculée pour plusieurs navires. Les valeurs estimées de SER totale pour les canaux HV et VH étaient d’environ 10 dB inférieures aux valeurs

  1. Middle Atmosphere Sounder and Thermal Emission Radiometer

    Data.gov (United States)

    National Aeronautics and Space Administration — Develop a compact instrument design for measurements of stratospheric temperature, ozone, carbon dioxide, and water vapor essential to understanding climate. MASTER...

  2. Mars Express en route for the Red Planet

    Science.gov (United States)

    2003-06-01

    remainder of the time, at Earth to relay the information collected in this way and the data transmitted by Beagle 2. The orbiter’s seven on-board instruments are expected to provide considerable information about the structure and evolution of Mars. A very high resolution stereo camera, the HRSC, will perform comprehensive mapping of the planet at 10 m resolution and will even be capable of photographing some areas to a precision of barely 2 m. The OMEGA spectrometer will draw up the first mineralogical map of the planet to 100 m precision. This mineralogical study will be taken further by the PFS spectrometer - which will also chart the composition of the Martian atmosphere, a prerequisite for investigation of atmospheric dynamics. The MARSIS radar instrument, with its 40 m antenna, will sound the surface to a depth of 2 km, exploring its structure and above all searching for pockets of water. Another instrument, ASPERA, will be tasked with investigating interaction between the upper atmosphere and the interplanetary medium. The focus here will be on determining how and at what rate the solar wind, in the absence of a magnetic field capable of deflecting it, scattered the bulk of the Martian atmosphere into space. Atmospheric investigation will also be performed by the SPICAM spectrometer and the MaRS experiment, with special emphasis on stellar occultation and radio signal propagation phenomena. The orbiter mission should last at least one Martian year (687 days), while Beagle 2 is expected to operate on the planet’s surface for 180 days. Only a start to exploration This first European mission to Mars incorporates some of the objectives of the Euro-Russian Mars 96 mission, which came to grief when the Proton launcher failed. And indeed a Russian partner is cooperating on each of the orbiter’s instruments. Mars Express forms part of an international Mars exploration programme, featuring also the US probes Mars Surveyor and Mars Odyssey, the two Mars Exploration

  3. Express web application development

    CERN Document Server

    Yaapa, Hage

    2013-01-01

    Express Web Application Development is a practical introduction to learning about Express. Each chapter introduces you to a different area of Express, using screenshots and examples to get you up and running as quickly as possible.If you are looking to use Express to build your next web application, ""Express Web Application Development"" will help you get started and take you right through to Express' advanced features. You will need to have an intermediate knowledge of JavaScript to get the most out of this book.

  4. Recombinant gene expression protocols

    National Research Council Canada - National Science Library

    Tuan, Rocky S

    1997-01-01

    .... A fundamental requirement for successful recombinant gene expression is the design of the cloning vector and the choice of the host organism for expression. Recombinant Gene Expression Protocols grows out of the need for a laboratory manual that provides the reader the background and rationale, as well as the practical protocols for the preparation of...

  5. Neuroglobin over expressing mice

    DEFF Research Database (Denmark)

    Raida, Zindy; Hundahl, Christian Ansgar; Nyengaard, Jens R

    2013-01-01

    showed over expression to be confined to primarily the cortex, hippocampus, cerebellum, and only in neurons. The level and expression pattern of endogenous Neuroglobin was unaffected by insertion of the over expressing Ngb transgene. Neuroglobin over expression resulted in a significant reduction...... previous reports, Neuroglobin over expression is not global but confined to a few well-defined brain regions, and only in neurons. This study confirms previous reports showing a correlation between reduced infarct volume and elevated Neuroglobin levels, but underlines the need to study the likely...

  6. Expressiveness in musical emotions.

    Science.gov (United States)

    Vieillard, Sandrine; Roy, Mathieu; Peretz, Isabelle

    2012-09-01

    This study was designed to investigate how emotion category, characterized by distinct musical structures (happiness, sadness, threat) and expressiveness (mechanical, expressive) may influence overt and covert behavioral judgments and physiological responses in musically trained and untrained listeners. Mechanical and expressive versions of happy, sad and scary excerpts were presented while physiological measures were recorded. Participants rated the intensity of the emotion they felt. In addition, they monitored excerpts for the presence of brief breaths. Results showed that the emotion categories were rated higher in the expressive than in the mechanical versions and that this effect was larger in musicians. Moreover, expressive excerpts were found to increase skin conductance level more than the mechanical ones, independently of their arousal value, and to slow down response times in the breath detection task relative to the mechanical versions, suggesting enhanced capture of attention by expressiveness. Altogether, the results support the key role of the performer's expression in the listener's emotional response to music.

  7. Regular Expression Pocket Reference

    CERN Document Server

    Stubblebine, Tony

    2007-01-01

    This handy little book offers programmers a complete overview of the syntax and semantics of regular expressions that are at the heart of every text-processing application. Ideal as a quick reference, Regular Expression Pocket Reference covers the regular expression APIs for Perl 5.8, Ruby (including some upcoming 1.9 features), Java, PHP, .NET and C#, Python, vi, JavaScript, and the PCRE regular expression libraries. This concise and easy-to-use reference puts a very powerful tool for manipulating text and data right at your fingertips. Composed of a mixture of symbols and text, regular exp

  8. Darwin and Emotion Expression

    Science.gov (United States)

    Hess, Ursula; Thibault, Pascal

    2009-01-01

    In his book "The Expression of the Emotions in Man and Animals," Charles Darwin (1872/1965) defended the argument that emotion expressions are evolved and adaptive (at least at some point in the past) and serve an important communicative function. The ideas he developed in his book had an important impact on the field and spawned rich domains of…

  9. Designing Emotionally Expressive Robots

    DEFF Research Database (Denmark)

    Tsiourti, Christiana; Weiss, Astrid; Wac, Katarzyna

    2017-01-01

    Socially assistive agents, be it virtual avatars or robots, need to engage in social interactions with humans and express their internal emotional states, goals, and desires. In this work, we conducted a comparative study to investigate how humans perceive emotional cues expressed by humanoid...... with abstract humanlike features. A qualitative and quantitative data analysis confirmed the expressive power of the face, but also demonstrated that body expressions or even simple head and locomotion movements could convey emotional information. These findings suggest that emotion recognition accuracy varies...... robots through five communication modalities (face, head, body, voice, locomotion) and examined whether the degree of a robot's human-like embodiment affects this perception. In an online survey, we asked people to identify emotions communicated by Pepper -a highly human-like robot and Hobbit – a robot...

  10. The expressions of emotions

    DEFF Research Database (Denmark)

    Vishnivetz, Berta

    Abstract On the broadness of the vast field called “Expressions of Emotions” this study focuses on the whole bodily emotional expression. The main question posed is: Whether there are movement patterns specific to each emotion?. I carried out a thorough review of the theories of emotion...... and of expressions of emotions and movement notation that provided the sources for a careful research plan for the empirical process of this study. On this basis I chose to record onto video the four previously choreographed movements that I considered to correspond each of the following emotions: joy, fear, sadness...... emotional display. The observers closely matched the investigator’s own parameters of what was expressed in the video. Other conditions which this observing system was designed to fulfil: to use simple and “objective” terms, only a short training period, and not use any special symbols. The results obtained...

  11. Materiality for Musical Expressions

    DEFF Research Database (Denmark)

    Lindell, Rikard; Tahiroğlu, Koray; Riis, Morten S.

    2016-01-01

    Nordic universities. Electronic music instrument makers participated in providing the course. In eleven days the students designed and built interfaces for musical expressions , composed a piece, and performed at the Norberg electronic music festival. The students explored the relationship between......We organised an elven day intense course in materiality for musical expressions to explore underlying principles of New Interfaces for Musical Expression (NIME) in higher education. We grounded the course in different aspects of ma-teriality and gathered interdisciplinary student teams from three...... technology and possible musical expression with a strong connection to culture and place. The emphasis on performance provided closure and motivated teams to move forward in their design and artistic processes. On the basis of the course we discuss an interdisciplinary NIME course syllabus, and we infer...

  12. Gene Expression Omnibus (GEO)

    Data.gov (United States)

    U.S. Department of Health & Human Services — Gene Expression Omnibus is a public functional genomics data repository supporting MIAME-compliant submissions of array- and sequence-based data. Tools are provided...

  13. Express.js blueprints

    CERN Document Server

    Augarten, Ben; Lin, Eric; Shaikh, Aidha; Soriani, Fabiano Pereira; Tisserand, Geoffrey; Zhang, Chiqing; Zhang, Kan

    2015-01-01

    This book is for beginners to Node.js and also for those who are technically advanced. By the end of this book, every competent developer will have achieved expertise in building web applications with Express.js.

  14. Improved estimation of Mars ionosphere total electron content

    Science.gov (United States)

    Cartacci, M.; Sánchez-Cano, B.; Orosei, R.; Noschese, R.; Cicchetti, A.; Witasse, O.; Cantini, F.; Rossi, A. P.

    2018-01-01

    We describe an improved method to estimate the Total Electron Content (TEC) of the Mars ionosphere from the echoes recorded by the Mars Advanced Radar for Subsurface and Ionosphere Sounding (MARSIS) (Picardi et al., 2005; Orosei et al., 2015) onboard Mars Express in its subsurface sounding mode. In particular, we demonstrate that this method solves the issue of the former algorithm described at (Cartacci et al., 2013), which produced an overestimation of TEC estimates on the day side. The MARSIS signal is affected by a phase distortion introduced by the Mars ionosphere that produces a variation of the signal shape and a delay in its travel time. The new TEC estimation is achieved correlating the parameters obtained through the correction of the aforementioned effects. In detail, the knowledge of the quadratic term of the phase distortion estimated by the Contrast Method (Cartacci et al., 2013), together with the linear term (i.e. the extra time delay), estimated through a radar signal simulator, allows to develop a new algorithm particularly well suited to estimate the TEC for solar zenith angles (SZA) lower than 95° The new algorithm for the dayside has been validated with independent data from MARSIS in its Active Ionospheric Sounding (AIS) operational mode, with comparisons with other previous algorithms based on MARSIS subsurface data, with modeling and with modeling ionospheric distortion TEC reconstruction.

  15. In Silico Expression Analysis.

    Science.gov (United States)

    Bolívar, Julio; Hehl, Reinhard; Bülow, Lorenz

    2016-01-01

    Information on the specificity of cis-sequences enables the design of functional synthetic plant promoters that are responsive to specific stresses. Potential cis-sequences may be experimentally tested, however, correlation of genomic sequence with gene expression data enables an in silico expression analysis approach to bioinformatically assess the stress specificity of candidate cis-sequences prior to experimental verification. The present chapter demonstrates an example for the in silico validation of a potential cis-regulatory sequence responsive to cold stress. The described online tool can be applied for the bioinformatic assessment of cis-sequences responsive to most abiotic and biotic stresses of plants. Furthermore, a method is presented based on a reverted in silico expression analysis approach that predicts highly specific potentially functional cis-regulatory elements for a given stress.

  16. Freedom of Expression

    Directory of Open Access Journals (Sweden)

    Guilherme Canela

    2007-06-01

    Full Text Available The freedoms of expression and of the press are basic pillars of the western democracies. The contemporary theoretical framework which gives support to these rights was generated in the wake of the liberal revolutions which took place in Western Europe and in North America starting from the second half of the 1600s. Our purpose in this text is to present the current scene regarding this topic, focusing whenever pertinent on the Brazilian case, and seeking to question the unconditional defense of the freedoms of expression and of the press made by the thinkers who founded these principles vis-á-vis contemporary issues of the communicational universe. Going beyond theoretical-conceptual refl ections, we present and analyze the results of a content analysis showing how 53 Brazilian newspapers and 4 magazines with nationwide circulation report (or not topics relating to freedom of expression and of the press.

  17. Regular expression containment

    DEFF Research Database (Denmark)

    Henglein, Fritz; Nielsen, Lasse

    2011-01-01

    We present a new sound and complete axiomatization of regular expression containment. It consists of the conventional axiomatiza- tion of concatenation, alternation, empty set and (the singleton set containing) the empty string as an idempotent semiring, the fixed- point rule E* = 1 + E × E......* for Kleene-star, and a general coin- duction rule as the only additional rule. Our axiomatization gives rise to a natural computational inter- pretation of regular expressions as simple types that represent parse trees, and of containment proofs as coercions. This gives the axiom- atization a Curry......-Howard-style constructive interpretation: Con- tainment proofs do not only certify a language-theoretic contain- ment, but, under our computational interpretation, constructively transform a membership proof of a string in one regular expres- sion into a membership proof of the same string in another regular expression. We...

  18. The Expressive Organization

    DEFF Research Database (Denmark)

    branding on organizational structures and processes? How do organizations discover their identities? These are some of the vexing problems addressed in this book by a diverse international team of contributors. According to the authors, the future lies with "the expressive organization". Such organizations......This text challenges beliefs about organizational identity, reputation, and branding. It contains a wealth of new ideas for finding the elusive answers to questions troubling contemporary organizations. How does an organization create a strong reputation? What are the implications of corporate...... not only understand their distinct identity and their brands, but are also able to express these externally and internally. In order to thrive in an era of transparency and customer choice, the authors argue, organizations will have to be expressive. This book is intended for undergraduate and postgraduate...

  19. The Expressive Organization

    DEFF Research Database (Denmark)

    branding on organizational structures and processes? How do organizations discover their identities? These are some of the vexing problems addressed in this book by a diverse international team of contributors. According to the authors, the future lies with "the expressive organization". Such organizations...... not only understand their distinct identity and their brands, but are also able to express these externally and internally. In order to thrive in an era of transparency and customer choice, the authors argue, organizations will have to be expressive. This book is intended for undergraduate and postgraduate......This text challenges beliefs about organizational identity, reputation, and branding. It contains a wealth of new ideas for finding the elusive answers to questions troubling contemporary organizations. How does an organization create a strong reputation? What are the implications of corporate...

  20. The Expressive Organization

    DEFF Research Database (Denmark)

    not only understand their distinct identity and their brands, but are also able to express these externally and internally. In order to thrive in an era of transparency and customer choice, the authors argue, organizations will have to be expressive. This book is intended for undergraduate and postgraduate......This text challenges beliefs about organizational identity, reputation, and branding. It contains a wealth of new ideas for finding the elusive answers to questions troubling contemporary organizations. How does an organization create a strong reputation? What are the implications of corporate...... branding on organizational structures and processes? How do organizations discover their identities? These are some of the vexing problems addressed in this book by a diverse international team of contributors. According to the authors, the future lies with "the expressive organization". Such organizations...

  1. Cholecystokinin expression in tumors

    DEFF Research Database (Denmark)

    Rehfeld, Jens F

    2016-01-01

    Cholecystokinin (CCK) is a classic gut hormone. CCK is also a complex system of peptides expressed in several molecular forms in enteroendocrine I cells, in cerebral and peripheral neurons, in cardiac myocytes and spermatozoa. CCK gene expression has now been found at protein or peptide level...... in different neuroendocrine tumors; cerebral gliomas and astrocytomas and specific pediatric tumors. Tumor hypersecretion of CCK was recently reported in a patient with a metastatic islet cell tumor and hypercholecystokininemia resulting in a novel tumor syndrome, the cholecystokininoma syndrome. This review...

  2. gene structure, gene expression

    Indian Academy of Sciences (India)

    and seedling leaves were sampled at 6 h after the treatment. For cold stress, the seedlings were transferred to 4◦C growth chamber for 30 min. Control seedlings were exposed to none of these treatments. To examine the expression patterns of these predicted genes in Poplar and to further confirm their stress responsive-.

  3. Facial Expression Recognition

    NARCIS (Netherlands)

    Pantic, Maja; Li, S.; Jain, A.

    2009-01-01

    Facial expression recognition is a process performed by humans or computers, which consists of: 1. Locating faces in the scene (e.g., in an image; this step is also referred to as face detection), 2. Extracting facial features from the detected face region (e.g., detecting the shape of facial

  4. Facial expressions recognition with an emotion expressive robotic head

    Science.gov (United States)

    Doroftei, I.; Adascalitei, F.; Lefeber, D.; Vanderborght, B.; Doroftei, I. A.

    2016-08-01

    The purpose of this study is to present the preliminary steps in facial expressions recognition with a new version of an expressive social robotic head. So, in a first phase, our main goal was to reach a minimum level of emotional expressiveness in order to obtain nonverbal communication between the robot and human by building six basic facial expressions. To evaluate the facial expressions, the robot was used in some preliminary user studies, among children and adults.

  5. New Mammalian Expression Systems.

    Science.gov (United States)

    Zhu, Jie; Hatton, Diane

    2017-06-06

    There are an increasing number of recombinant antibodies and proteins in preclinical and clinical development for therapeutic applications. Mammalian expression systems are key to enabling the production of these molecules, and Chinese hamster ovary (CHO) cell platforms continue to be central to delivery of the stable cell lines required for large-scale production. Increasing pressure on timelines and efficiency, further innovation of molecular formats and the shift to new production systems are driving developments of these CHO cell line platforms. The availability of genome and transcriptome data coupled with advancing gene editing tools are increasing the ability to design and engineer CHO cell lines to meet these challenges. This chapter aims to give an overview of the developments in CHO expression systems and some of the associated technologies over the past few years.

  6. Metaphorical everyday expressions

    Directory of Open Access Journals (Sweden)

    Sandra Pereira Bernardo

    2016-03-01

    Full Text Available Based on conceptual metaphor theory (LAKOFF, (2002 [1980]; KÖVECSES, 2010b, metaphorical or potentially metaphorical expressions found in the Banco de Dados Interacionais (RONCARATI, 1996 a volume that contains transcripts of conversations recorded between November 1989 and January 1991 totaling about 270 minutes, are analyzed. Lasting between 5 and 30 minutes, the 13 conversations that make up this volume were segmented in 9927 intonational units (CHAFE, 1988; Du Bois et alii, 1992. Of these units, 82 metaphorical expressions were found that reveal source and target domains widely reported in the literature: PERSON, EMOTION, OBJECT, HUMAN BODY, ECONOMY and ANIMAL. This study confirms assumptions about the theory of conceptual metaphor, in their original linguistic manifestations (or not, with respect to the specifics of their conceptualization contexts in real talk.

  7. Data Mining for Expressivity of Recombinant Protein Expression

    Science.gov (United States)

    Kira, Satoshi; Isoai, Atsushi; Yamamura, Masayuki

    We analyzed the expressivity of recombinant proteins by using data mining methods. The expression technique of recombinant protein is a key step towards elucidating the functions of genes discovered through genomic sequence projects. We have studied the productive efficiency of recombinant proteins in fission yeast, Schizosaccharomyces pombe (S.pombe), by mining the expression results. We gathered 57 proteins whose expression levels were known roughly in the host. Correlation analysis, principal component analysis and decision tree analysis were applied to these expression data. Analysis featuring codon usage and amino acid composition clarified that the amino acid composition affected to the expression levels of a recombinant protein strongly than the effect of codon usage. Furthermore, analysis of amino acid composition showed that protein solubility and the metabolism cost of amino acids correlated with a protein expressivity. Codon usage was often interesting in the field of recombinant expressions. However, our analysis found the weak correlation codon features with expressivities. These results indicated that ready-made indices of codon bias were irrelevant ones for modeling the expressivities of recombinant proteins. Our data driven approach was an easy and powerful method to improve recombinant protein expression, and this approach should be concentrated attention with the huge amount of expression data accumulating through the post-genome era.

  8. Application of Differential Inversion to DMSP Microwave Sounder Data

    Science.gov (United States)

    1993-07-31

    profiles and the treatment of cross-track (nonzero nadir angle) scans. These theoretical advances will be included in the DI software, during the upcoming...DI to scans with nonzero nadir angle is discussed. The work carried out thus far in applying DI to DMSP SSM/T-1 data is discussed in §3. In §3.1 the...CP3 (22) (here ® denotes tensor product or power) and G (the Green’s function) is given by 1 G(z) = - 4 (23) where r is the magnitude of the 3-vector z

  9. A Retrieval Error Analysis Technique for Passive Infrared Atmospheric Sounders

    Science.gov (United States)

    1993-07-08

    with different noise levels to be completed quickly. Computations to create the A matrix generally took 1/2 to I h on the Silicon Graphics Indigo R4000... Kid , write( 10,304 )inmax,hmod 304 format(i5,a24) C c Record 3.5, 3.6 repeat for each layer C c Get water vapor in mixing ratio (jcharC*,1)=C) c H20

  10. A microwave pressure sounder. [for remote measurement of atmospheric pressure

    Science.gov (United States)

    Peckham, G. E.; Flower, D. A.

    1981-01-01

    A technique for the remote measurement of atmospheric surface pressure will be described. Such measurements could be made from a satellite in polar orbit and would cover many areas for which conventional meteorological data are not available. An active microwave instrument is used to measure the strength of return echoes from the ocean surface at a number of frequencies near the 60 GHz oxygen absorption band. Factors which affect the accuracy with which surface pressure can be deduced from these measurements will be discussed and an instrument designed to test the method by making measurements from an aircraft will be described.

  11. Using Microwave Limb Sounder Data to Validate Model Ice Fields

    Science.gov (United States)

    Waliser, Duane E.; Li, Jui-Lin; Jiang, Jonathan H.; Tompkins, Adrian; Chern, J.-D.; Tao, W.-K.; Khairoutdinov, M.

    2006-01-01

    MLS IWC overall tends to be higher relative to ECMWF after considering MLS track sampling and sensitivity (cutoff application). Disagreement tends to be accentuated over Indian and Western Pacific Oceans and over tropical landmasses. Large disagreement occur at upper level at 147 hPa but small at lower levels at 215 and 316 hPa suggesting the need to investigate the strength of model large-scale circulation and physics associated with the IWC formation. Future work includes: Present MMF/ECMWF Comparisons at AGU/Baltimore Session on MMF/Cloud Resolving Modeling, GMAO/GSFC & at the WPac/Bejing/AGU in Tao's Cloud-Radiation Session. Write-up Results on ECMWF/MLS Comparisons for GRL. Continue with MLS vs ECMWF Water Vapor & Temperature comparisons - will seek more interaction with other MLS colleagues. Investigate the Development of Biases in ECMWF Forecasts - i.e. in the actual model. Work with GMAO-5 development team regarding their cloud microphysics performance. Integrate CloudSat into IWC Analyses.

  12. The Box Model and the Acoustic Sounder, a Case Study

    DEFF Research Database (Denmark)

    Jensen, Niels Otto; Lundtang Petersen, Erik

    1979-01-01

    Concentrations of SO2 in a large city during a subsidence situation are predicted as a function of time by means of a simple box model and the predictions are compared to actual SO2 concentration measurements. The agreement between model results and measurements is found to be excellent. The model...

  13. P-band polarimetric ice sounder: concept and first results

    DEFF Research Database (Denmark)

    Dall, Jørgen; Hernández, Carlos Cilla; Kristensen, Steen Savstrup

    2008-01-01

    direction. In May 2008, a proof-of-concept campaign was organized in Greenland, where data were acquired over the ice sheet. The system proved capable of detecting the bedrock under 3 km thick ice and of mapping the internal ice layers down to a depth of at least 1.3 km. In this paper, the system concept...

  14. Airborne radar sounder for temperate ice: initial results from Patagonia

    Science.gov (United States)

    Zamora, Rodrigo; Ulloa, David; Garcia, Gonzalo; Mella, Ronald; Uribe, José; Wendt, Jens; Rivera, Andrés; Gacitúa, Guisella; Casassa, Gino

    We describe the development of a low-frequency airborne radar specifically designed for the sounding of temperate ice. The system operates at a central frequency of 1 MHz and consists of an impulse transmitter with an output voltage up to 5000 V and a digital receiver with a maximum gain of 80 dB. The radar was deployed on board a CASA 212 aircraft, which also carries a laser altimeter, an inertial navigation system, a digital camera and a GPS receiver. A description of the radar system is provided, as well as preliminary results obtained at Glaciar Tyndall, Campo de Hielo Sur (Southern Patagonia Icefield), where an ice depth of 670 m was reached.

  15. Application of multiplicative array techniques for multibeam sounder systems

    Digital Repository Service at National Institute of Oceanography (India)

    Chakraborty, B.

    Multiplicative array processing is well known for its narrow beamwidth and low sidelobe level, but the array gain is quite low. The effectiveness of such a system becomes lower, especially when the signal to noise ratio is low. Proposed some...

  16. Expressing emotions in blogs

    DEFF Research Database (Denmark)

    Rodriguez-Hidalgo, Carmina Rodriguez-Hidalgo; Tan, Ed S.; Verlegh, Peeter

    2017-01-01

    of emotion (SSE, Rimé, 2009). This study content-analyzed Live Journal blogposts for the occurrence of TPC in three phases of online SSE: initiation, feedback and repost. We compared these to TPC on a second type of emotional expression, emotional venting. Based on Social Information processing theory (SIP......Textual paralanguage cues (TPC) have been signaled as effective emotion transmitters online. Though several studies have investigated their properties and occurrence, there remains a gap concerning their communicative impact within specific psychological processes, such as the social sharing......, Walther, 1992), and on the Emotional Mimicry in Context (EMC, Hess & Fischer, 2013) framework, we study predictive relationships in TPC usage in our phased model of online SSE. Results showed that TPC prevailed in SSE blogposts and strongly dominated in emotional venting posts. TPC was more common...

  17. Natural Art, False Expressions

    Directory of Open Access Journals (Sweden)

    Oscar Hernando Nossa García

    2011-05-01

    Full Text Available In the documentary My Kid Could Paint That, directed by Bar-Lev, which deals with Marla Olmstead, the child prodigy of painting, several interviews with persons in the art world are conducted, among them an artist who uses a magnifying glass and the thinnest brushes to do his work. This man, although happy for the success of the child’s abstract paintings, saw in the whole spectacle a mockery of art, and stood firmly by her work. The girl’s father, also an artist, was accused of plagiarism. Cameras entered the child’s studio in order to prove that Marla was the real artist. Why should such relevance be given to authorship? What is the cause of the dispute between the expressive and the rational?

  18. Visual expression in architecture

    Directory of Open Access Journals (Sweden)

    Alfirević Đorđe

    2011-01-01

    Full Text Available Relaying on standpoints of the renowned art critic Herbert Read, according to which realism, idealism and expressionism are not separate art movements, but represent permanent basic factors in all arts, this paper considers the possibility of existence of elementary creative orientation in architecture as well. Starting from basic aspects of perception and representation of the world around us, and through a comparative analysis and examples from other fields, a thesis is presented according to which notions of mimesis (mimicry, associativity and expression in architecture are adequate counterparts to Read's basic factors of art - realism, idealism and expressionism. Depending on sociopolitical, cultural and historical, as well as other circumstances, from time to time some of these factors come to the surface, wrapped up in time, and emerge in some new or old form which we can recognize as an art movement or style.

  19. Gene Expression in Bone

    Science.gov (United States)

    D'Ambrogio, A.

    Skeletal system has two main functions, to provide mechanical integrity for both locomotion and protection and to play an important role in mineral homeostasis. There is extensive evidence showing loss of bone mass during long-term Space-Flights. The loss is due to a break in the equilibrium between the activity of osteoblasts (the cells that forms bone) and the activity of osteoclasts (the cells that resorbs bone). Surprisingly, there is scanty information about the possible altered gene expression occurring in cells that form bone in microgravity.(Just 69 articles result from a "gene expression in microgravity" MedLine query.) Gene-chip or microarray technology allows to screen thousands of genes at the same time: the use of this technology on samples coming from cells exposed to microgravity could provide us with many important informations. For example, the identification of the molecules or structures which are the first sensors of the mechanical stress derived from lack of gravity, could help in understanding which is the first event leading to bone loss due to long-term exposure to microgravity. Consequently, this structure could become a target for a custom-designed drug. It is evident that bone mass loss, observed during long-time stay in Space, represents an accelerated model of what happens in aging osteoporosis. Therefore, the discovery and design of drugs able to interfere with the bone-loss process, could help also in preventing negative physiological processes normally observed on Earth. Considering the aims stated above, my research is designed to:

  20. What emotion does the "facial expression of disgust" express?

    Science.gov (United States)

    Pochedly, Joseph T; Widen, Sherri C; Russell, James A

    2012-12-01

    The emotion attributed to the prototypical "facial expression of disgust" (a nose scrunch) depended on what facial expressions preceded it. In two studies, the majority of 120 children (5-14 years) and 135 adults (16-58 years) judged the nose scrunch as expressing disgust when the preceding set included an anger scowl, but as angry when the anger scowl was omitted. An even greater proportion of observers judged the nose scrunch as angry when the preceding set also included a facial expression of someone about to be sick. The emotion attributed to the nose scrunch therefore varies with experimental context. PsycINFO Database Record (c) 2012 APA, all rights reserved.

  1. Facial Expressivity at 4 Months: A Context by Expression Analysis.

    Science.gov (United States)

    Bennett, David S; Bendersky, Margaret; Lewis, Michael

    2002-01-01

    The specificity predicted by differential emotions theory (DET) for early facial expressions in response to 5 different eliciting situations was studied in a sample of 4-month-old infants (n = 150). Infants were videotaped during tickle, sour taste, jack-in-the-box, arm restraint, and masked-stranger situations and their expressions were coded second by second. Infants showed a variety of facial expressions in each situation; however, more infants exhibited positive (joy and surprise) than negative expressions (anger, disgust, fear, and sadness) across all situations except sour taste. Consistent with DET-predicted specificity, joy expressions were the most common in response to tickling, and were less common in response to other situations. Surprise expressions were the most common in response to the jack-in-the-box, as predicted, but also were the most common in response to the arm restraint and masked-stranger situations, indicating a lack of specificity. No evidence of predicted specificity was found for anger, disgust, fear, and sadness expressions. Evidence of individual differences in expressivity within situations, as well as stability in the pattern across situations, underscores the need to examine both child and contextual factors in studying emotional development. The results provide little support for the DET postulate of situational specificity and suggest that a synthesis of differential emotions and dynamic systems theories of emotional expression should be considered.

  2. Animal Cell Expression Systems.

    Science.gov (United States)

    Butler, M; Reichl, U

    2017-10-03

    The glycan profile of therapeutic recombinant proteins such as monoclonal antibodies is a critical quality attribute, which affects the efficacy of the final product. The cellular glycosylation process during protein expression is dependent upon a number of factors such as the availability of substrates in the media, the intracellular content of nucleotide sugars, and the enzyme repertoire of the host cells. In order to control the variability of glycosylation it is important to understand the critical process parameters and their acceptable range of values to enable reproducible production of proteins with a predetermined glycan profile providing the desired biological function or therapeutic effect. The depletion of critical nutrients such as glucose or galactose, which may occur toward the end of a culture process, can lead to truncated glycans. Terminal galactosylation and sialyation are particularly variable but may be controlled by the presence of some key media components. Ammonia accumulation, pH, and dissolved oxygen levels are also known to be key bioprocess parameters that affect the glycosylation of recombinant proteins. Specific enzyme inhibitors can be added to the media to drive the formation of selected and predetermined glycan profiles. Various attempts have been made to predict the glycan profiles of cellular expressed proteins and have led to metabolic models based upon knowledge of metabolic flux and the kinetics of individual glycosylation reactions.In contrast to single recombinant proteins, the glycan profiles of viral vaccines are far more complex and difficult to predict. The example of influenza A virus shows that hemagglutinin, the major antigenic determinant, has three to nine N-glycans, which may influence the antigenicity and efficacy of the vaccine. Glycosylation of the influenza A virus has been largely unmonitored in the past as production has been from eggs, where glycan profiles of antigens are difficult if not impossible to

  3. Emotional Expression in Reality TV

    DEFF Research Database (Denmark)

    Rasmussen, Tove Arendt

    are being treated as ordinary people. My article will discuss different presentations of selves and especially the emotional verbal and nonverbal expressions in reality TV communication. Aspects of the intimate self and its emotional expressions seem to be strategically managed in reality TV and even......, that information ‘given off’ in lying behavior will must often be found in non-verbal mikro expressions and mikro gestures. I will end by discussing the strategic emotional expressions as production of floating identities in a broader framework on the basis of among others Gergen, Lipovetsky and Baumann...

  4. Oracle Application Express 4 Recipes

    CERN Document Server

    Zehoo, Edmund

    2011-01-01

    Oracle Application Express 4 Recipes provides an example-based approach to learning Application Express - the ground-breaking, rapid application development platform included with every Oracle Database license. The recipes format is ideal for the quick-study who just wants a good example or two to kick start their thinking and get pointed in the right direction. The recipes cover the gamut of Application Express development. Author and Application Express expert Edmund Zehoo shows how to create data entry screens, visualize data in the form of reports and charts, implement validation and back-

  5. Expression modeling for expression-invariant face recognition

    NARCIS (Netherlands)

    Haar, F.B. Ter; Veltkamp, R.C.

    2010-01-01

    Morphable face models have proven to be an effective tool for 3D face modeling and face recognition, but the extension to 3D face scans with expressions is still a challenge. The two main difficulties are (1) how to build a new morphable face model that deals with expressions, and (2) how to fit

  6. Expressing the Way the World Is: Expression as Reference.

    Science.gov (United States)

    Robinson, Jenefer M.

    1979-01-01

    This paper analyzes a specific form of artistic expression: revelation by a work of art of some quality of the world, not of the artist. After discussing the aesthetic theories of Guy Sircello, Monroe Beardsley, and Nelson Goodman, the author presents her own model of "expression of the world." (SJL)

  7. Human papillomavirus gene expression

    International Nuclear Information System (INIS)

    Chow, L.T.; Hirochika, H.; Nasseri, M.; Stoler, M.H.; Wolinsky, S.M.; Chin, M.T.; Hirochika, R.; Arvan, D.S.; Broker, T.R.

    1987-01-01

    To determine the role of tissue differentiation on expression of each of the papillomavirus mRNA species identified by electron microscopy, the authors prepared exon-specific RNA probes that could distinguish the alternatively spliced mRNA species. Radioactively labeled single-stranded RNA probes were generated from a dual promoter vector system and individually hybridized to adjacent serial sections of formalin-fixed, paraffin-embedded biopsies of condylomata. Autoradiography showed that each of the message species had a characteristic tissue distribution and relative abundance. The authors have characterized a portion of the regulatory network of the HPVs by showing that the E2 ORF encodes a trans-acting enhancer-stimulating protein, as it does in BPV-1 (Spalholz et al. 1985). The HPV-11 enhancer was mapped to a 150-bp tract near the 3' end of the URR. Portions of this region are duplicated in some aggressive strains of HPV-6 (Boshart and zur Hausen 1986; Rando et al. 1986). To test the possible biological relevance of these duplications, they cloned tandem arrays of the enhancer and demonstrated, using a chloramphenicol acetyltransferase (CAT) assay, that they led to dramatically increased transcription proportional to copy number. Using the CAT assays, the authors found that the E2 proteins of several papillomavirus types can cross-stimulate the enhancers of most other types. This suggests that prior infection of a tissue with one papillomavirus type may provide a helper effect for superinfection and might account fo the HPV-6/HPV-16 coinfections in condylomata that they have observed

  8. Pain expression as a biometric

    DEFF Research Database (Denmark)

    Haque, Mohammad A.; Nasrollahi, Kamal; Moeslund, Thomas B.

    2017-01-01

    Developing a vision-based efficient and automatic pain intensity measurement system requires the understanding of the relationship between self-reported pain intensity and pain expression in the facial videos. In this paper, we first demonstrate how pain expression in facial video frames may not ...

  9. Creating an Expressive Performance Mindset

    Science.gov (United States)

    Broomhead, Paul; Skidmore, Jon B.

    2014-01-01

    Students in performance situations sometimes experience physiological symptoms that inhibit their ability to perform as expressively as they otherwise might possess the understanding and ability to do. As students set out to perform with an expressive mindset, the brain's limbic system may detect some perceived danger in the situation and…

  10. Measuring facial expression of emotion.

    Science.gov (United States)

    Wolf, Karsten

    2015-12-01

    Research into emotions has increased in recent decades, especially on the subject of recognition of emotions. However, studies of the facial expressions of emotion were compromised by technical problems with visible video analysis and electromyography in experimental settings. These have only recently been overcome. There have been new developments in the field of automated computerized facial recognition; allowing real-time identification of facial expression in social environments. This review addresses three approaches to measuring facial expression of emotion and describes their specific contributions to understanding emotion in the healthy population and in persons with mental illness. Despite recent progress, studies on human emotions have been hindered by the lack of consensus on an emotion theory suited to examining the dynamic aspects of emotion and its expression. Studying expression of emotion in patients with mental health conditions for diagnostic and therapeutic purposes will profit from theoretical and methodological progress.

  11. Differential Gene Expression and Aging

    Directory of Open Access Journals (Sweden)

    Laurent Seroude

    2002-01-01

    Full Text Available It has been established that an intricate program of gene expression controls progression through the different stages in development. The equally complex biological phenomenon known as aging is genetically determined and environmentally modulated. This review focuses on the genetic component of aging, with a special emphasis on differential gene expression. At least two genetic pathways regulating organism longevity act by modifying gene expression. Many genes are also subjected to age-dependent transcriptional regulation. Some age-related gene expression changes are prevented by caloric restriction, the most robust intervention that slows down the aging process. Manipulating the expression of some age-regulated genes can extend an organism's life span. Remarkably, the activity of many transcription regulatory elements is linked to physiological age as opposed to chronological age, indicating that orderly and tightly controlled regulatory pathways are active during aging.

  12.  Prokaryotic expression systems

    Directory of Open Access Journals (Sweden)

    Dorota Porowińska

    2013-03-01

    Full Text Available For overproduction of recombinant proteins both eukaryotic and prokaryotic expression systems are used. Choosing the right system depends, among other things, on the growth rate and culture of host cells, level of the target gene expression and posttranslational processing of the synthesized protein. Regardless of the type of expression system, its basic elements are the vector and the expression host.The most widely used system for protein overproduction, both on a laboratory and industrial scale, is the prokaryotic system. This system is based primarily on the bacteria E. coli, although increasingly often Bacillus species are used. The prokaryotic system allows one to obtain large quantities of recombinant proteins in a short time. A simple and inexpensive bacterial cell culture and well-known mechanisms of transcription and translation facilitate the use of these microorganisms. The simplicity of genetic modifications and the availability of many bacterial mutants are additional advantages of the prokaryotic system. In this article we characterize the structural elements of prokaryotic expression vectors. Also strategies for preparation of the target protein gene that increase productivity, facilitate detection and purification of recombinant protein and provide its activity are discussed. Bacterial strains often used as host cells in expression systems as well as the potential location of heterologous proteins are characterized.Knowledge of the basic elements of the prokaryotic expression system allows for production of biologically active proteins in a short time and in satisfactory quantities. 

  13. Expression in E. coli systems

    DEFF Research Database (Denmark)

    Krogsdam, Anne-M; Kristiansen, Karsten; Nøhr, Jane

    2003-01-01

    intracellularly in soluble form. In E. coli, proteins containing disulfide bonds are best produced by secretion because the disulfide forming foldases reside in the periplasm. Likewise, a correct N-terminus is more likely to be obtained upon secretion. Moreover, potentially toxic proteins are more likely......Owing to cost advantage, speed of production, and often high product yield (up to 50% of total cell protein), expression in Escherichia coli is generally the first choice when attempting to express a recombinant protein. Expression systems exist to produce recombinant protein intracellularly...

  14. Analysis of Facial Expression by Taste Stimulation

    Science.gov (United States)

    Tobitani, Kensuke; Kato, Kunihito; Yamamoto, Kazuhiko

    In this study, we focused on the basic taste stimulation for the analysis of real facial expressions. We considered that the expressions caused by taste stimulation were unaffected by individuality or emotion, that is, such expressions were involuntary. We analyzed the movement of facial muscles by taste stimulation and compared real expressions with artificial expressions. From the result, we identified an obvious difference between real and artificial expressions. Thus, our method would be a new approach for facial expression recognition.

  15. A Tattoo Is Expression, Too.

    Science.gov (United States)

    Dowling-Sendor, Benjamin

    1997-01-01

    In "Stephenson v. Davenport Community School District," the U.S. Eighth Circuit Court of Appeals ruled that schools cannot adopt unduly vague policies to regulate student expression, in this case, a cross-shaped tattoo. (LMI)

  16. Emerald Express '95: Analysis Report

    National Research Council Canada - National Science Library

    Newett, Sandra

    1996-01-01

    The purpose of Emerald Express was to bring together senior representatives from military, relief, political, and diplomatic communities to address issues that arise during Humanitarian Assistance and Peace Operations (HA/POs...

  17. Precise Analysis of String Expressions

    DEFF Research Database (Denmark)

    Christensen, Aske Simon; Møller, Anders; Schwartzbach, Michael Ignatieff

    2003-01-01

    , including statically checking the syntax of dynamically generated expressions, such as SQL queries. Our analysis constructs flow graphs from class files and generates a context-free grammar with a nonterminal for each string expression. The language of this grammar is then widened into a regular language......We perform static analysis of Java programs to answer a simple question: which values may occur as results of string expressions? The answers are summarized for each expression by a regular language that is guaranteed to contain all possible values. We present several applications of this analysis...... are automatically produced. We present extensive benchmarks demonstrating that the analysis is efficient and produces results of useful precision....

  18. Regulation of eucaryotic gene expression

    Energy Technology Data Exchange (ETDEWEB)

    Brent, R.; Ptashne, M.S

    1989-05-23

    This patent describes a method of regulating the expression of a gene in a eucaryotic cell. The method consists of: providing in the eucaryotic cell, a peptide, derived from or substantially similar to a peptide of a procaryotic cell able to bind to DNA upstream from or within the gene, the amount of the peptide being sufficient to bind to the gene and thereby control expression of the gene.

  19. Human Lacrimal Gland Gene Expression.

    Directory of Open Access Journals (Sweden)

    Vinay Kumar Aakalu

    Full Text Available The study of human lacrimal gland biology and development is limited. Lacrimal gland tissue is damaged or poorly functional in a number of disease states including dry eye disease. Development of cell based therapies for lacrimal gland diseases requires a better understanding of the gene expression and signaling pathways in lacrimal gland. Differential gene expression analysis between lacrimal gland and other embryologically similar tissues may be helpful in furthering our understanding of lacrimal gland development.We performed global gene expression analysis of human lacrimal gland tissue using Affymetrix ® gene expression arrays. Primary data from our laboratory was compared with datasets available in the NLM GEO database for other surface ectodermal tissues including salivary gland, skin, conjunctiva and corneal epithelium.The analysis revealed statistically significant difference in the gene expression of lacrimal gland tissue compared to other ectodermal tissues. The lacrimal gland specific, cell surface secretory protein encoding genes and critical signaling pathways which distinguish lacrimal gland from other ectodermal tissues are described.Differential gene expression in human lacrimal gland compared with other ectodermal tissue types revealed interesting patterns which may serve as the basis for future studies in directed differentiation among other areas.

  20. The motivation to express prejudice

    Science.gov (United States)

    Forscher, Patrick S.; Cox, William T. L.; Graetz, Nicholas; Devine, Patricia G.

    2015-01-01

    Contemporary prejudice research focuses primarily on people who are motivated to respond without prejudice and the ways in which unintentional bias can cause these people to act inconsistent with this motivation. However, some real-world phenomena (e.g., hate speech, hate crimes) and experimental findings (e.g., Plant & Devine, 2001; 2009) suggest that some expressions of prejudice are intentional. These phenomena and findings are difficult to explain solely from the motivations to respond without prejudice. We argue that some people are motivated to express prejudice, and we develop the motivation to express prejudice (MP) scale to measure this motivation. In seven studies involving more than 6,000 participants, we demonstrate that, across scale versions targeted at Black people and gay men, the MP scale has good reliability and convergent, discriminant, and predictive validity. In normative climates that prohibit prejudice, the internal and external motivations to express prejudice are functionally non-independent, but they become more independent when normative climates permit more prejudice toward a target group. People high in the motivation to express prejudice are relatively likely to resist pressure to support programs promoting intergroup contact and vote for political candidates who support oppressive policies. The motivation to express prejudice predicted these outcomes even when controlling for attitudes and the motivations to respond without prejudice. This work encourages contemporary prejudice researchers to broaden the range of samples, target groups, and phenomena that they study, and more generally to consider the intentional aspects of negative intergroup behavior. PMID:26479365

  1. Epimorphin expression in interstitial pneumonia

    Directory of Open Access Journals (Sweden)

    Suga Moritaka

    2005-01-01

    Full Text Available Abstract Epimorphin modulates epithelial morphogenesis in embryonic mouse organs. We previously suggested that epimorphin contributes to repair of bleomycin-induced pulmonary fibrosis in mice via epithelium-mesenchyme interactions. To clarify the role of epimorphin in human lungs, we evaluated epimorphin expression and localization in normal lungs, lungs with nonspecific interstitial pneumonia (NSIP, and lungs with usual interstitial pneumonia (UIP; we also studied the effect of recombinant epimorphin on cultured human alveolar epithelial cells in vitro. Northern and Western blotting analyses revealed that epimorphin expression in NSIP samples were significantly higher than those in control lungs and lungs with UIP. Immunohistochemistry showed strong epimorphin expression in mesenchymal cells of early fibrotic lesions and localization of epimorphin protein on mesenchymal cells and extracellular matrix of early fibrotic lesions in the nonspecific interstitial pneumonia group. Double-labeled fluorescent images revealed expression of matrix metalloproteinase 2 in re-epithelialized cells overlying epimorphin-positive early fibrotic lesions. Immunohistochemistry and metalloproteinase activity assay demonstrated augmented expression of metalloproteinase induced by recombinant epimorphin in human alveolar epithelial cells. These findings suggest that epimorphin contributes to repair of pulmonary fibrosis in nonspecific interstitial pneumonia, perhaps partly by inducing expression of matrix metalloproteinase 2, which is an important proteolytic factor in lung remodeling.

  2. Cloning and expression of a widely expressed receptor tyrosine phosphatase

    DEFF Research Database (Denmark)

    Sap, J; D'Eustachio, P; Givol, D

    1990-01-01

    and Bmp-2a loci. The corresponding mRNA (3.0 kilobases) is expressed in most murine tissues and most abundantly expressed in brain and kidney. Antibodies against a synthetic peptide of R-PTP-alpha identified a 130-kDa protein in cells transfected with the R-PTP-alpha cDNA.......We describe the identification of a widely expressed receptor-type (transmembrane) protein tyrosine phosphatase (PTPase; EC 3.1.3.48). Screening of a mouse brain cDNA library under low-stringency conditions with a probe encompassing the intracellular (phosphatase) domain of the CD45 lymphocyte...... antigen yielded cDNA clones coding for a 794-amino acid transmembrane protein [hereafter referred to as receptor protein tyrosine phosphatase alpha (R-PTP-alpha)] with an intracellular domain displaying clear homology to the catalytic domains of CD45 and LAR (45% and 53%, respectively). The 142-amino acid...

  3. Studying Emotional Expression in Music Performance.

    Science.gov (United States)

    Gabrielsson, Alf

    1999-01-01

    Explores the importance of emotional expression in music performance. Performers played music to express different emotions and then listening tests were conducted in order to determine whether the intended expressions were perceived. Presents and discusses the results. (CMK)

  4. Pericentrin expression in Down's syndrome.

    Science.gov (United States)

    Salemi, Michele; Barone, Concetta; Romano, Carmelo; Salluzzo, Roberto; Caraci, Filippo; Cantarella, Rita Anna; Salluzzo, Maria Grazia; Drago, Filippo; Romano, Corrado; Bosco, Paolo

    2013-11-01

    Down's syndrome (DS) is the most frequent genetic cause of intellectual disability and is a chromosomal abnormality of chromosome 21 trisomy. The pericentrin gene (PCNT) has sequenced in 21q22.3 inside of the minimal critical region for Down's syndrome. Alterations of PCNT gene are associated with dwarfism, cardiomyopathy and other pathologies. In this study, we have evaluated the possible differential expression of PCNT mRNA, by qRT-PCR, in peripheral blood leukocytes of DS subjects compared with the normal population. In the present case-control study, PCNT gene expression was increased by 72.72% in 16 out 22 DS samples compared with normal subjects. Our data suggest that changes in the expression levels of PCNT in DS subjects may be involved into the molecular mechanism of Down's syndrome.

  5. An Expressive Extension of TLC

    DEFF Research Database (Denmark)

    Henriksen, Jesper Gulmann

    2002-01-01

    A temporal logic of causality (TLC) was introduced by Alur, Penczek and Peled in [1]. It is basically a linear time temporal logic interpreted over Mazurkiewicz traces which allows quantification over causal chains. Through this device one can directly formulate causality properties of distributed...... systems. In this paper we consider an extension of TLC by strengthening the chain quantification operators. We show that our logic TLC* adds to the expressive power of TLC. We do so by defining an Ehrenfeucht-Fraïssé game to capture the expressive power of TLC. We then exhibit a property and by means...... of this game prove that the chosen property is not definable in TLC. We then show that the same property is definable in TLC*. We prove in fact the stronger result that TLC* is expressively stronger than TLC exactly when the dependency relation associated with the underlying trace alphabet is not transitive....

  6. Construction of PVX virus-expression vector to express enterotoxin ...

    African Journals Online (AJOL)

    user

    2011-02-07

    Feb 7, 2011 ... systems for transient production of recombinant tallergens in. Nicotiana benthamiana. Methods, 32: 227-234. Xu CG. Wang WZ (1999). High level expression of fusion gene of. Heat-stable enterotoxin(ST1) and Heat-Labile enterotoxin B subunit(LTB). Acta Veterinaria et Zootechnica Sinic, 30: 249-253.

  7. EXPRESS Service to the International Space Station: EXPRESS Pallet

    Science.gov (United States)

    Primm, Lowell; Bergmann, Alan

    1998-01-01

    The International Space Station (ISS) will be the ultimate scientific accomplishment in the history of NASA, with its primary objective of providing unique scientific investigation opportunities. This objective is the basis for the creation of the EXPRESS Pallet System (ExPs). The EXPRESS Pallet will provide extremal/unpressurized accommodations for a wide variety of external users. The payload developers represent many science disciplines, including earth observation, communications, solar and deep space viewing, long-term exposure, and many others. The EXPRESS Pallet will provide a mechanism to maximum utilization of the limited ISS unpressurized payload volume, standard physical payload interfaces for users, a standard integration template for users and the capability to changeout payloads on-orbit. The EXPRESS Pallet provides access to Ram, Wake, Starboard, Port, Nadir, Zenith and Earth Limb for exposure and viewing. 'Me ExPs consists of the Pallet structure, payload Adapters, and a subsystem assembly which includes data controller, power distribution and conversion, and Extra Vehicular Robotics/Extra-Vehicular Activity systems.

  8. Construction of PVX virus-expression vector to express enterotoxin ...

    African Journals Online (AJOL)

    Potato X potyvirus (PVX)-based vector has been comprehensively applied in transient expression system. In order to produce the heterologous proteins more quickly and stably, the ClaI and NotI enzyme sites were introduced into the Enterotoxin fusion gene LTB-ST by polymerase chain reaction (PCR) and the LTB-ST ...

  9. Developmental expression of paraoxonase 2.

    Science.gov (United States)

    Garrick, Jacqueline M; Dao, Khoi; de Laat, Rian; Elsworth, John; Cole, Toby B; Marsillach, Judit; Furlong, Clement E; Costa, Lucio G

    2016-11-25

    Paraoxonase 2 (PON2) is a member of the paraoxonase gene family also comprising PON1 and PON3. PON2 functions as a lactonase and exhibits anti-bacterial as well as antioxidant properties. At the cellular level, PON2 localizes to the mitochondrial and endoplasmic reticulum membranes where it scavenges reactive oxygen species. PON2 is of particular interest as it is the only paraoxonase expressed in brain tissue and appears to play a critical role in mitigating oxidative stress in the brain. The aim of this study was to investigate the expression of PON2 at the protein and mRNA level in the brain and liver of mice through development to identify potential age windows of susceptibility to oxidative stress, as well as to compare expression of hepatic PON2 to expression of PON1 and PON3. Overall, PON2 expression in the brain was lower in neonatal mice and increased with age up to postnatal day (PND) 21, with a significant decrease observed at PND 30 and 60. In contrast, the liver showed continuously increasing levels of PON2 with age, similar to the patterns of PON1 and PON3. PON2 protein levels were also investigated in brain samples from non-human primates, with PON2 increasing with age up to the infant stage and decreasing at the juvenile stage, mirroring the results observed in the mouse brain. These variable expression levels of PON2 suggest that neonatal and young adult animals may be more susceptible to neurological insult by oxidants due to lower levels of PON2 in the brain. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  10. Gene expression in colorectal cancer

    DEFF Research Database (Denmark)

    Birkenkamp-Demtroder, Karin; Christensen, Lise Lotte; Olesen, Sanne Harder

    2002-01-01

    Understanding molecular alterations in colorectal cancer (CRC) is needed to define new biomarkers and treatment targets. We used oligonucleotide microarrays to monitor gene expression of about 6,800 known genes and 35,000 expressed sequence tags (ESTs) on five pools (four to six samples in each...... pool) of total RNA from left-sided sporadic colorectal carcinomas. We compared normal tissue to carcinoma tissue from Dukes' stages A-D (noninvasive to distant metastasis) and identified 908 known genes and 4,155 ESTs that changed remarkably from normal to tumor tissue. Based on intensive filtering 226...

  11. Expressions of emotions in blogs

    OpenAIRE

    Zajančkovskaja, Viktorija

    2016-01-01

    Emotions – a part of person life. We always feel something and express in different ways: body language, mime, or words (our language). In my research are analyzed emotions language in weblogs, because weblogs like public notebooks, which shows a really language usage. It can to see in weblogs, how do people perceive emotions, what criteria assigns them. The aim of research: to determine, what kind of words and how do people express own emotions in weblogs. There was reviewed 15 weblogs and g...

  12. Gene expression in colorectal cancer

    DEFF Research Database (Denmark)

    Birkenkamp-Demtroder, Karin; Christensen, Lise Lotte; Olesen, Sanne Harder

    2002-01-01

    Understanding molecular alterations in colorectal cancer (CRC) is needed to define new biomarkers and treatment targets. We used oligonucleotide microarrays to monitor gene expression of about 6,800 known genes and 35,000 expressed sequence tags (ESTs) on five pools (four to six samples in each......' C, and clustered Dukes' D separately. Real-time PCR of 10 known genes and 5 ESTs demonstrated excellent reproducibility of the array-based findings. The most frequently altered genes belonged to functional categories of metabolism (22%), transcription and translation (11%), and cellular processes (9...

  13. Microsoft Expression Web for dummies

    CERN Document Server

    Hefferman, Linda

    2013-01-01

    Expression Web is Microsoft's newest tool for creating and maintaining dynamic Web sites. This FrontPage replacement offers all the simple ""what-you-see-is-what-you-get"" tools for creating a Web site along with some pumped up new features for working with Cascading Style Sheets and other design options. Microsoft Expression Web For Dummies arrives in time for early adopters to get a feel for how to build an attractive Web site. Author Linda Hefferman teams up with longtime FrontPage For Dummies author Asha Dornfest to show the easy way for first-time Web designers, FrontPage ve

  14. Advanced express web application development

    CERN Document Server

    Keig, Andrew

    2013-01-01

    A practical book, guiding the reader through the development of a single page application using a feature-driven approach.If you are an experienced JavaScript developer who wants to build highly scalable, real-world applications using Express, this book is ideal for you. This book is an advanced title and assumes that the reader has some experience with node, Javascript MVC web development frameworks, and has heard of Express before, or is familiar with it. You should also have a basic understanding of Redis and MongoDB. This book is not a tutorial on Node, but aims to explore some of the more

  15. The Change of Expression Configuration Affects Identity-Dependent Expression Aftereffect but Not Identity-Independent Expression Aftereffect.

    Science.gov (United States)

    Song, Miao; Shinomori, Keizo; Qian, Qian; Yin, Jun; Zeng, Weiming

    2015-01-01

    The present study examined the influence of expression configuration on cross-identity expression aftereffect. The expression configuration refers to the spatial arrangement of facial features in a face for conveying an emotion, e.g., an open-mouth smile vs. a closed-mouth smile. In the first of two experiments, the expression aftereffect is measured using a cross-identity/cross-expression configuration factorial design. The facial identities of test faces were the same or different from the adaptor, while orthogonally, the expression configurations of those facial identities were also the same or different. The results show that the change of expression configuration impaired the expression aftereffect when the facial identities of adaptor and tests were the same; however, the impairment effect disappears when facial identities were different, indicating the identity-independent expression representation is more robust to the change of the expression configuration in comparison with the identity-dependent expression representation. In the second experiment, we used schematic line faces as adaptors and real faces as tests to minimize the similarity between the adaptor and tests, which is expected to exclude the contribution from the identity-dependent expression representation to expression aftereffect. The second experiment yields a similar result as the identity-independent expression aftereffect observed in Experiment 1. The findings indicate the different neural sensitivities to expression configuration for identity-dependent and identity-independent expression systems.

  16. Homeobox gene expression in Brachiopoda

    DEFF Research Database (Denmark)

    Altenburger, Andreas; Martinez, Pedro; Wanninger, Andreas

    2011-01-01

    The molecular control that underlies brachiopod ontogeny is largely unknown. In order to contribute to this issue we analyzed the expression pattern of two homeobox containing genes, Not and Cdx, during development of the rhynchonelliform (i.e., articulate) brachiopod Terebratalia transversa. Not...

  17. The SSETI-express Mission

    DEFF Research Database (Denmark)

    Alminde, Lars; Bisgaard, Morten; Melville, N.

    In January 2004 a group of students met at the European Space Technology and Research Centre (ESTEC) in Holland to discuss the feasibility of building a micro-satellite, dubbed SSETI-Express, from parts derived from other student satellite projects and launch it within one and a half year...

  18. The SSETI-Express Mission

    DEFF Research Database (Denmark)

    Alminde, Lars; Bisgaard, Morten; Melville, Neil

    2005-01-01

    In January 2004 a group of students met at the European Space Technology and Research Centre (ESTEC) in Holland to discuss the feasibility of building a micro-satellite, dubbed SSETI-Express, from parts derived from other student satellite projects and launch it within one and a half year...

  19. Expressions that talk about themselves

    NARCIS (Netherlands)

    Fokkinga, M.M.

    1996-01-01

    In this paper we explain, independent of any formalism, how to construct an expression in a formal system that ‘does something with itself’. As an application of this procedure we show how to construct a program that writes its own text, lay-out included. The emphases is on the systematic

  20. Remote control of gene expression.

    Science.gov (United States)

    Long, Xiaochun; Miano, Joseph M

    2007-06-01

    The elucidation of a growing number of species' genomes heralds an unprecedented opportunity to ascertain functional attributes of non-coding sequences. In particular, cis regulatory modules (CRMs) controlling gene expression constitute a rich treasure trove of data to be defined and experimentally validated. Such information will provide insight into cell lineage determination and differentiation and the genetic basis of heritable diseases as well as the development of novel tools for restricting the inactivation of genes to specific cell types or conditions. Historically, the study of CRMs and their individual transcription factor binding sites has been limited to proximal regions around gene loci. Two important by-products of the genomics revolution, artificial chromosome vectors and comparative genomics, have fueled efforts to define an increasing number of CRMs acting remotely to control gene expression. Such regulation from a distance has challenged our perspectives of gene expression control and perhaps the very definition of a gene. This review summarizes current approaches to characterize remote control of gene expression in transgenic mice and inherent limitations for accurately interpreting the essential nature of CRM activity.

  1. Mapping and Manipulating Facial Expression

    Science.gov (United States)

    Theobald, Barry-John; Matthews, Iain; Mangini, Michael; Spies, Jeffrey R.; Brick, Timothy R.; Cohn, Jeffrey F.; Boker, Steven M.

    2009-01-01

    Nonverbal visual cues accompany speech to supplement the meaning of spoken words, signify emotional state, indicate position in discourse, and provide back-channel feedback. This visual information includes head movements, facial expressions and body gestures. In this article we describe techniques for manipulating both verbal and nonverbal facial…

  2. ADAMTS Expression in Colorectal Cancer

    Science.gov (United States)

    Filou, Serafula; Korpetinou, Aggeliki; Kyriakopoulou, Dora; Bounias, Dimitrios; Stavropoulos, Michael; Ravazoula, Panagiota; Papachristou, Dionysios J.; Theocharis, Achilleas D.; Vynios, Demitrios H.

    2015-01-01

    ADAMTSs are a family of secreted proteinases that share the metalloproteinase domain with matrix metalloproteinases (MMPs). By acting on a large panel of extracellular substrates, they control several cell functions such as fusion, adhesion, proliferation and migration. Through their thrombospondin motifs they also possess anti-angiogenic properties. We investigated whether ADAMTSs participate in colorectal cancer progression and invasion. Their expression was investigated at both mRNA and protein levels. Using RT-PCR, the expression of ADAMTS-1, -4, -5 and ADAMTS-20 was estimated in colorectal tumors of different cancer stage and anatomic site and 3 cell lines of different aggressiveness. An overexpression of ADAMTS-4 and -5 was observed, especially in tissue samples, whereas ADAMTS-1 and -20 were found to be down-regulated. Western blot analysis further supported the RT-PCR findings, revealing in addition the degradation of ADAMTS-1 and -20 in cancer. In situ expression and localization of ADAMTS-1, -4, -5 and -20 was also investigated by immunohistochemical analysis. Our data suggest a positive correlation between ADAMTS-4 and -5 expression and cancer progression, in contrast with the anti-angiogenic members of the family, ADAMTS-1 and -20, which were found to be down-regulated. Our findings support the notion that overexpression of ADAMTS-4 and ADAMTS-5 in colorectal cancer might be a possible invasive mechanism of cancer cells in order to degrade proteoglycans of ECM. PMID:25786261

  3. ADAMTS expression in colorectal cancer.

    Directory of Open Access Journals (Sweden)

    Serafula Filou

    Full Text Available ADAMTSs are a family of secreted proteinases that share the metalloproteinase domain with matrix metalloproteinases (MMPs. By acting on a large panel of extracellular substrates, they control several cell functions such as fusion, adhesion, proliferation and migration. Through their thrombospondin motifs they also possess anti-angiogenic properties. We investigated whether ADAMTSs participate in colorectal cancer progression and invasion. Their expression was investigated at both mRNA and protein levels. Using RT-PCR, the expression of ADAMTS-1, -4, -5 and ADAMTS-20 was estimated in colorectal tumors of different cancer stage and anatomic site and 3 cell lines of different aggressiveness. An overexpression of ADAMTS-4 and -5 was observed, especially in tissue samples, whereas ADAMTS-1 and -20 were found to be down-regulated. Western blot analysis further supported the RT-PCR findings, revealing in addition the degradation of ADAMTS-1 and -20 in cancer. In situ expression and localization of ADAMTS-1, -4, -5 and -20 was also investigated by immunohistochemical analysis. Our data suggest a positive correlation between ADAMTS-4 and -5 expression and cancer progression, in contrast with the anti-angiogenic members of the family, ADAMTS-1 and -20, which were found to be down-regulated. Our findings support the notion that overexpression of ADAMTS-4 and ADAMTS-5 in colorectal cancer might be a possible invasive mechanism of cancer cells in order to degrade proteoglycans of ECM.

  4. Spirit Boxes: Expressions of Culture.

    Science.gov (United States)

    DeMuro, Ted

    1984-01-01

    After studying the culture and art of the ancient civilizations of South America, Mesopotamia, Greece, and Egypt, secondary level art students made spirit boxes as expressions of the various cultures. How to make the boxes and how to prepare the face molds are described. (RM)

  5. 'Endurance' Courtesy of Mars Express

    Science.gov (United States)

    2004-01-01

    NASA's Mars Exploration Rover Opportunity used its panoramic camera to capture this false-color image of the interior of 'Endurance Crater' on the rover's 188th martian day (Aug. 4, 2004). The image data were relayed to Earth by the European Space Agency's Mars Express orbiter. The image was generated from separate frames using the cameras 750-, 530- and 480-nanometer filters.

  6. Vascular Gene Expression: A Hypothesis

    Directory of Open Access Journals (Sweden)

    Angélica Concepción eMartínez-Navarro

    2013-07-01

    Full Text Available The phloem is the conduit through which photoassimilates are distributed from autotrophic to heterotrophic tissues and is involved in the distribution of signaling molecules that coordinate plant growth and responses to the environment. Phloem function depends on the coordinate expression of a large array of genes. We have previously identified conserved motifs in upstream regions of the Arabidopsis genes, encoding the homologs of pumpkin phloem sap mRNAs, displaying expression in vascular tissues. This tissue-specific expression in Arabidopsis is predicted by the overrepresentation of GA/CT-rich motifs in gene promoters. In this work we have searched for common motifs in upstream regions of the homologous genes from plants considered to possess a primitive vascular tissue (a lycophyte, as well as from others that lack a true vascular tissue (a bryophyte, and finally from chlorophytes. Both lycophyte and bryophyte display motifs similar to those found in Arabidopsis with a significantly low E-value, while the chlorophytes showed either a different conserved motif or no conserved motif at all. These results suggest that these same genes are expressed coordinately in non- vascular plants; this coordinate expression may have been one of the prerequisites for the development of conducting tissues in plants. We have also analyzed the phylogeny of conserved proteins that may be involved in phloem function and development. The presence of CmPP16, APL, FT and YDA in chlorophytes suggests the recruitment of ancient regulatory networks for the development of the vascular tissue during evolution while OPS is a novel protein specific to vascular plants.

  7. The motivation to express prejudice.

    Science.gov (United States)

    Forscher, Patrick S; Cox, William T L; Graetz, Nicholas; Devine, Patricia G

    2015-11-01

    Contemporary prejudice research focuses primarily on people who are motivated to respond without prejudice and the ways in which unintentional bias can cause these people to act in a manner inconsistent with this motivation. However, some real-world phenomena (e.g., hate speech, hate crimes) and experimental findings (e.g., Plant & Devine, 2001, 2009) suggest that some prejudice is intentional. These phenomena and findings are difficult to explain solely from the motivations to respond without prejudice. We argue that some people are motivated to express prejudice, and we develop the Motivation to Express Prejudice Scale (MP) to measure this motivation. In 7 studies involving more than 6,000 participants, we demonstrate that, across scale versions targeted at Black people and gay men, the MP has good reliability and convergent, discriminant, and predictive validity. In normative climates that prohibit prejudice, the internal and external motivations to express prejudice are functionally nonindependent, but they become more independent when normative climates permit more prejudice toward a target group. People high in the motivation to express prejudice are relatively likely to resist pressure to support programs promoting intergroup contact and to vote for political candidates who support oppressive policies. The motivation to express prejudice predicted these outcomes even when controlling for attitudes and the motivations to respond without prejudice. This work encourages contemporary prejudice researchers to give greater consideration to the intentional aspects of negative intergroup behavior and to broaden the range of phenomena, target groups, and samples that they study. (c) 2015 APA, all rights reserved).

  8. DNA expressions - A formal notation for DNA

    NARCIS (Netherlands)

    Vliet, Rudy van

    2015-01-01

    We describe a formal notation for DNA molecules that may contain nicks and gaps. The resulting DNA expressions denote formal DNA molecules. Different DNA expressions may denote the same molecule. Such DNA expressions are called equivalent. We examine which DNA expressions are minimal, which

  9. Architecture between construction and expression

    Directory of Open Access Journals (Sweden)

    Luca Lanini

    2015-11-01

    Full Text Available I think that the problem is basically the same as always: to redefine the relationship between Construction and Expression. On one hand, construction is considered an endeavor, on the other hand, a tendency to contest architecture only with expression. The relationship between architecture and control of urban phenomena is a relationship that has been gradually lost in the past three decades and has been replaced by the relationship between finance and planning. A useful object is very different from a building: for its time and costs of construction. Buildings are expected to last many years and are paid with everybody’s taxes, a design object’s lifespan is perhaps fifty years, then it’s ready to be modernized or for the landfill ... I believe that the main tool that a designer must have, beyond necessary technical skills, is the capacity of his/her own critical thought.

  10. Expression in E. coli systems

    DEFF Research Database (Denmark)

    Krogsdam, Anne-M; Kristiansen, Karsten; Nøhr, Jane

    2003-01-01

    (soluble or in inclusion bodies), secreted to the periplasm, or to the surrounding medium. When deciding on a genetic design strategy, it is important to consider the nature of the recombinant protein. The mildest and thus the obvious first-choice expression strategy is to attempt to express the protein...... intracellularly in soluble form. In E. coli, proteins containing disulfide bonds are best produced by secretion because the disulfide forming foldases reside in the periplasm. Likewise, a correct N-terminus is more likely to be obtained upon secretion. Moreover, potentially toxic proteins are more likely...... secretion (1). As another strategy to avoid toxicity to the host or if the recombinant protein is very susceptible to cellular proteases, some protection is obtained by targeting the protein to light-refractile aggregates known as inclusion bodies (2,3). Several different strategies exist for subsequent...

  11. Correction of gene expression data

    DEFF Research Database (Denmark)

    Darbani Shirvanehdeh, Behrooz; Stewart, C. Neal, Jr.; Noeparvar, Shahin

    2014-01-01

    an analytical approach to examine the suitability of correction methods by considering the inter-treatment bias as well as the inter-replicate variance, which allows use of the best correction method with minimum residual bias. Analyses of RNA sequencing and microarray data showed that the efficiencies......This report investigates for the first time the potential inter-treatment bias source of cell number for gene expression studies. Cell-number bias can affect gene expression analysis when comparing samples with unequal total cellular RNA content or with different RNA extraction efficiencies....... For maximal reliability of analysis, therefore, comparisons should be performed at the cellular level. This could be accomplished using an appropriate correction method that can detect and remove the inter-treatment bias for cell-number. Based on inter-treatment variations of reference genes, we introduce...

  12. On the Expressiveness of Joining

    Directory of Open Access Journals (Sweden)

    Thomas Given-Wilson

    2015-08-01

    Full Text Available The expressiveness of communication primitives has been explored in a common framework based on the pi-calculus by considering four features: synchronism (asynchronous vs synchronous, arity (monadic vs polyadic data, communication medium (shared dataspaces vs channel-based, and pattern-matching (binding to a name vs testing name equality vs intensionality. Here another dimension coordination is considered that accounts for the number of processes required for an interaction to occur. Coordination generalises binary languages such as pi-calculus to joining languages that combine inputs such as the Join Calculus and general rendezvous calculus. By means of possibility/impossibility of encodings, this paper shows coordination is unrelated to the other features. That is, joining languages are more expressive than binary languages, and no combination of the other features can encode a joining language into a binary language. Further, joining is not able to encode any of the other features unless they could be encoded otherwise.

  13. Podoplanin Expression in Canine Melanoma

    OpenAIRE

    Ogasawara, Satoshi; Honma, Ryusuke; Kaneko, Mika K.; Fujii, Yuki; Kagawa, Yumiko; Konnai, Satoru; Kato, Yukinari

    2016-01-01

    A type I transmembrane protein, podoplanin (PDPN), is expressed in several normal cells such as lymphatic endothelial cells or pulmonary type I alveolar cells. We recently demonstrated that anticanine PDPN monoclonal antibody (mAb), PMab-38, recognizes canine PDPN of squamous cell carcinomas, but does not react with lymphatic endothelial cells. Herein, we investigated whether PMab-38 reacts with canine melanoma. PMab-38 reacted with 90% of melanoma cells (9/10 cases) using immunohistochemistr...

  14. Expressing Individuality via Food Choices

    OpenAIRE

    Weaver, Amanda S.; Lusk, Jayson

    2014-01-01

    A new means to the end of expressing one’s identity or individuality has grown in popularity in recent years; food is much more to consumers than the basic physiological needs of food. Consumers have diversified into a wide range of food personality types with different perceptions of the role food should play in their lives. This paper uses factor analysis and compares these food personality factors with food attributes factors consisting of non-price features of food products. Results show ...

  15. Transgenic Arabidopsis Gene Expression System

    Science.gov (United States)

    Ferl, Robert; Paul, Anna-Lisa

    2009-01-01

    The Transgenic Arabidopsis Gene Expression System (TAGES) investigation is one in a pair of investigations that use the Advanced Biological Research System (ABRS) facility. TAGES uses Arabidopsis thaliana, thale cress, with sensor promoter-reporter gene constructs that render the plants as biomonitors (an organism used to determine the quality of the surrounding environment) of their environment using real-time nondestructive Green Fluorescent Protein (GFP) imagery and traditional postflight analyses.

  16. The motivation to express prejudice

    OpenAIRE

    Forscher, Patrick S.; Cox, William T. L.; Graetz, Nicholas; Devine, Patricia G.

    2015-01-01

    Contemporary prejudice research focuses primarily on people who are motivated to respond without prejudice and the ways in which unintentional bias can cause these people to act inconsistent with this motivation. However, some real-world phenomena (e.g., hate speech, hate crimes) and experimental findings (e.g., Plant & Devine, 2001; 2009) suggest that some expressions of prejudice are intentional. These phenomena and findings are difficult to explain solely from the motivat...

  17. PCBS AND TIGHT JUNCTION EXPRESSION

    OpenAIRE

    Eum, Sung Yong; András, Ibolya E.; Couraud, Pierre-Olivier; Hennig, Bernhard; Toborek, Michal

    2008-01-01

    Polychlorinated biphenyl (PCB) congeners exhibit a broad range of adverse biological effects including neurotoxicity. The mechanisms by which PCBs cause neurotoxic effects are still not completely understood. The blood-brain barrier (BBB) is a physical and metabolic barrier separating brain microenvironment from the peripheral circulation and is mainly composed of endothelial cells connected by tight junctions. We examined the effects of several highly-chlorinated PCB congeners on expression ...

  18. Summer Oral Expression English Course

    CERN Multimedia

    HR Department

    2011-01-01

    An English Oral Expression course will take place between 15 August and 30 September 2011. Schedule: to be determined (2 sessions of 2 hours per week). Please note that this course is for learners who have a good knowledge of English (CERN level 7 upwards). If you are interested in following this course, please enrol here. Or contact: Kerstin FUHRMEISTER (70896) Tessa OSBORNE (72957)  

  19. Gene expression profile of pulpitis

    Science.gov (United States)

    Galicia, Johnah C.; Henson, Brett R.; Parker, Joel S.; Khan, Asma A.

    2016-01-01

    The cost, prevalence and pain associated with endodontic disease necessitate an understanding of the fundamental molecular aspects of its pathogenesis. This study was aimed to identify the genetic contributors to pulpal pain and inflammation. Inflamed pulps were collected from patients diagnosed with irreversible pulpitis (n=20). Normal pulps from teeth extracted for various reasons served as controls (n=20). Pain level was assessed using a visual analog scale (VAS). Genome-wide microarray analysis was performed using Affymetrix GeneTitan Multichannel Instrument. The difference in gene expression levels were determined by the Significance Analysis of Microarray program using a false discovery rate (q-value) of 5%. Genes involved in immune response, cytokine-cytokine receptor interaction and signaling, integrin cell surface interactions, and others were expressed at relatively higher levels in the in the pulpitis group. Moreover, several genes known to modulate pain and inflammation showed differential expression in asymptomatic and mild pain patients (≥30mm on VAS) compared to those with moderate to severe pain. This exploratory study provides a molecular basis for the clinical diagnosis of pulpitis. With an enhanced understanding of pulpal inflammation, future studies on treatment and management of pulpitis and on pain associated with it can have a biological reference to bridge treatment strategies with pulpal biology. PMID:27052691

  20. Gene expression profile of pulpitis.

    Science.gov (United States)

    Galicia, J C; Henson, B R; Parker, J S; Khan, A A

    2016-06-01

    The cost, prevalence and pain associated with endodontic disease necessitate an understanding of the fundamental molecular aspects of its pathogenesis. This study was aimed to identify the genetic contributors to pulpal pain and inflammation. Inflamed pulps were collected from patients diagnosed with irreversible pulpitis (n=20). Normal pulps from teeth extracted for various reasons served as controls (n=20). Pain level was assessed using a visual analog scale (VAS). Genome-wide microarray analysis was performed using Affymetrix GeneTitan Multichannel Instrument. The difference in gene expression levels were determined by the significance analysis of microarray program using a false discovery rate (q-value) of 5%. Genes involved in immune response, cytokine-cytokine receptor interaction and signaling, integrin cell surface interactions, and others were expressed at relatively higher levels in the pulpitis group. Moreover, several genes known to modulate pain and inflammation showed differential expression in asymptomatic and mild pain patients (⩾30 mm on VAS) compared with those with moderate to severe pain. This exploratory study provides a molecular basis for the clinical diagnosis of pulpitis. With an enhanced understanding of pulpal inflammation, future studies on treatment and management of pulpitis and on pain associated with it can have a biological reference to bridge treatment strategies with pulpal biology.

  1. Children's expression through play therapy

    Directory of Open Access Journals (Sweden)

    Ljubomirović Nataša

    2015-01-01

    Full Text Available Play as a child's expression, is a skill through which children speaks to adults. Play therapy is a broad field of therapeutic intervention based on the play in order to help the child to cope with problems. Through play, children learn to communicate with others, to express their feelings. Through play they learn and can improve their cognitive, emotional and social capabilities. Play therapy is a nondirective technique focused on the child. It is not focused on the problem, at present even the past, but focused on the expression of the child feelings, accepting the child, rather than correction. The focus has been on the wisdom of a child, not on expertise therapists, guiding the child through play rather than instructing. The aim of play therapy is to encourage healthy growth and development, developing skills in problem solving, reduction of undesirable behavior, confidence building and the development of self-control. This method is effective for a wide range of children's problems, such as the state of stress, anxiety, problem behavior, hyperkinetic syndrome, depression, loss, trauma, the problem of bonding situations parents divorced, somatic disorders, autism spectrum disorders, social problems.

  2. Gene Expression in Trypanosomatid Parasites

    Directory of Open Access Journals (Sweden)

    Santiago Martínez-Calvillo

    2010-01-01

    Full Text Available The parasites Leishmania spp., Trypanosoma brucei, and Trypanosoma cruzi are the trypanosomatid protozoa that cause the deadly human diseases leishmaniasis, African sleeping sickness, and Chagas disease, respectively. These organisms possess unique mechanisms for gene expression such as constitutive polycistronic transcription of protein-coding genes and trans-splicing. Little is known about either the DNA sequences or the proteins that are involved in the initiation and termination of transcription in trypanosomatids. In silico analyses of the genome databases of these parasites led to the identification of a small number of proteins involved in gene expression. However, functional studies have revealed that trypanosomatids have more general transcription factors than originally estimated. Many posttranslational histone modifications, histone variants, and chromatin modifying enzymes have been identified in trypanosomatids, and recent genome-wide studies showed that epigenetic regulation might play a very important role in gene expression in this group of parasites. Here, we review and comment on the most recent findings related to transcription initiation and termination in trypanosomatid protozoa.

  3. Summer Oral Expression English course

    CERN Multimedia

    2012-01-01

    An English Oral Expression course will take place this summer from 20 August to 29 September.   Schedule: to be determined (2 sessions of 2 hours per week). Please note that this course is for learners who have a good knowledge of English (CERN level 7 upwards). If you are interested in following this course, please enroll through this link. Please be sure to indicate your planned absences in the comments field so we can schedule the course. If you need more information please send a message to English.training@cern.ch

  4. Summer Oral Expression English course

    CERN Multimedia

    2012-01-01

    An English Oral Expression course will take place this summer at some time between 25 June and 28 September. The exact dates will be decided according to the preferences of the students.   Schedule: to be determined (2 sessions of 2 hours per week). Please note that this course is for learners who have a good knowledge of English (CERN level 7 upwards). If you are interested in following this course, please enroll through this link. Please be sure to indicate your planned absences in the comments field so we can schedule the course. If you need more information please send a message to English.training@cern.ch

  5. Visualizing structures of speech expressiveness

    DEFF Research Database (Denmark)

    Herbelin, Bruno; Jensen, Karl Kristoffer; Graugaard, Lars

    2008-01-01

    vowels and consonants, and which converts the speech energy into visual particles that form complex visual structures, provides us with a mean to present the expressiveness of speech into a visual mode. This system is presented in an artwork whose scenario is inspired from the reasons of language......Speech is both beautiful and informative. In this work, a conceptual study of the speech, through investigation of the tower of Babel, the archetypal phonemes, and a study of the reasons of uses of language is undertaken in order to create an artistic work investigating the nature of speech...

  6. Summer Oral Expression English course

    CERN Multimedia

    2013-01-01

    An English Oral Expression course will take place this summer at some time between August 19 and October 4.   Schedule: to be determined (2 sessions of 2 hours per week). Please note that this course is for learners who have a good knowledge of English (CERN level 7 upwards). If you are interested in following this course, please enroll through this link. Please be sure to indicate your planned absences in the comments field so we can schedule the course. If you need more information please send a message to English.training@cern.ch.

  7. Summer Oral Expression English Course

    CERN Multimedia

    HR Department

    2011-01-01

    An English Oral Expression course will take place between 15 August and 30 September 2011. Schedule: to be determined (2 sessions of 2 hours per week). Please note that this course is for learners who have a good knowledge of English (CERN level 7 upwards). If you are interested in following this course, please enrol through the following link https://cta.cern.ch/cta2/f?p=110:9:1576796470009589::::X_STATUS,XS_COURSE_NAME,XS_PROGRAMME,XS_SUBCATEGORY,X_COURSE_ID,XS_LANGUAGE,XS_SESSION:D,,1,,4368,B, Or contact: Kerstin FUHRMEISTER (70896) Tessa OSBORNE (72957)  

  8. Global expression differences and tissue specific expression differences in rice evolution result in two contrasting types of differentially expressed genes

    KAUST Repository

    Horiuchi, Youko

    2015-12-23

    Background Since the development of transcriptome analysis systems, many expression evolution studies characterized evolutionary forces acting on gene expression, without explicit discrimination between global expression differences and tissue specific expression differences. However, different types of gene expression alteration should have different effects on an organism, the evolutionary forces that act on them might be different, and different types of genes might show different types of differential expression between species. To confirm this, we studied differentially expressed (DE) genes among closely related groups that have extensive gene expression atlases, and clarified characteristics of different types of DE genes including the identification of regulating loci for differential expression using expression quantitative loci (eQTL) analysis data. Results We detected differentially expressed (DE) genes between rice subspecies in five homologous tissues that were verified using japonica and indica transcriptome atlases in public databases. Using the transcriptome atlases, we classified DE genes into two types, global DE genes and changed-tissues DE genes. Global type DE genes were not expressed in any tissues in the atlas of one subspecies, however changed-tissues type DE genes were expressed in both subspecies with different tissue specificity. For the five tissues in the two japonica-indica combinations, 4.6 ± 0.8 and 5.9 ± 1.5 % of highly expressed genes were global and changed-tissues DE genes, respectively. Changed-tissues DE genes varied in number between tissues, increasing linearly with the abundance of tissue specifically expressed genes in the tissue. Molecular evolution of global DE genes was rapid, unlike that of changed-tissues DE genes. Based on gene ontology, global and changed-tissues DE genes were different, having no common GO terms. Expression differences of most global DE genes were regulated by cis-eQTLs. Expression

  9. Glypican-3 Expression in Breast Cancer

    Directory of Open Access Journals (Sweden)

    Ching-Hua Tsai

    2015-12-01

    Conclusions: Immunohistochemical staining with TMA was convenient and feasible for analyzing Glypican-3 expression status in breast cancer. However, our preliminary results show that Glypican-3 expression had no significant prognostic value in breast cancer.

  10. Mediated Interactions and Musical Expression - A Survey

    NARCIS (Netherlands)

    Reidsma, Dennis; Radha, Mustafa; Nijholt, Antinus; Lee, Newton

    2014-01-01

    This chapter surveys the field of technologically mediated musical interaction and technologically enhanced musical expression. We look at several new technologies that enable new ways of musical expression and interaction, explore the micro-coordination that occurs in collaborative musical

  11. The College Student's Freedom of Expression

    Science.gov (United States)

    Gibbs, Annette

    1974-01-01

    Discussion of means to ensure freedom of expression by college students. Areas of expression noted are student newspapers, lectures by off-campus speakers, freedom to assemble peaceably and freedom to associate. (EK)

  12. Kivy and Langer on expressiveness in music

    Directory of Open Access Journals (Sweden)

    van der Schoot Albert

    2013-01-01

    Full Text Available From 1980 onwards, Peter Kivy has put forward that music does not so much express emotions but rather is expressive of emotions. The character of the music does not represent the character or mood of the composer, but reflects his knowledge of emotional life. Unfortunately, Kivy fails to give credit to Susanne Langer, who brought these views to the fore as early as 1942, claiming that the vitality of music lies in expressiveness, not in expression.

  13. Promoter Sequences for Defining Transgene Expression

    Science.gov (United States)

    Jones, Huw D.; Sparks, Caroline A.

    The design of reverse genetic experiments that utilize transgenic approaches often requires transgenes to be expressed in a predefined pattern and there is limited information regarding the gene expression profile for specific promoters. It is important that expression patterns are predetermined in the specific genotype targeted for transformation because the same promoter-transgene construct can produce different expression patterns in different host species. This chapter compares constitutive, targeted, or inducible promoters that have been characterized in specific cereal species.

  14. Vocal Emotion Expressions Effects on Cooperation Behavior

    Science.gov (United States)

    Caballero Meneses, Jonathan Azael; Menez Díaz, Judith Marina

    2017-01-01

    Emotional expressions have been proposed to be important for regulating social interaction as they can serve as cues for behavioral intentions. The issue has been mainly addressed analyzing the effects of facial emotional expressions in cooperation behavior, but there are contradictory results regarding the impact of emotional expressions on that…

  15. Expression, purification and characterization of the interferon ...

    Indian Academy of Sciences (India)

    Earlier, we had reported that expression of recombinant human RNase L caused RNA-degradation and cell-growth inhibition in E. coli without the need for exogenous 2-5A. Expression of human RNase L in E. coli usually leads to problems of leaky expression, low yield and degradation of the recombinant protein, which ...

  16. Manipulation of expressions in a relational algebra

    NARCIS (Netherlands)

    Stroet, J.W.M.; Engmann, R.G.R.

    1979-01-01

    This paper describes a syntax for expressions based on the relational algebra. A tree representation is generated when an expression is analyzed. Transformations on the tree representations of expressions are applied in order to obtain improvements with respect to the speed of evaluation in a data

  17. 7 CFR 27.99 - Values; expression.

    Science.gov (United States)

    2010-01-01

    ... 7 Agriculture 2 2010-01-01 2010-01-01 false Values; expression. 27.99 Section 27.99 Agriculture... CLASSIFICATION UNDER COTTON FUTURES LEGISLATION Regulations Price Quotations and Differences § 27.99 Values; expression. For the purpose of this subpart values shall be expressed in terms of cents and hundredths of a...

  18. Generating Expressive Speech for Storytelling Applications

    NARCIS (Netherlands)

    Bailly, G.; Theune, Mariet; Meijs, Koen; Campbell, N.; Hamza, W.; Heylen, Dirk K.J.; Ordelman, Roeland J.F.; Hoge, H.; Jianhua, T.

    Work on expressive speech synthesis has long focused on the expression of basic emotions. In recent years, however, interest in other expressive styles has been increasing. The research presented in this paper aims at the generation of a storytelling speaking style, which is suitable for

  19. Learning to Be Creatively Expressive Performers

    Science.gov (United States)

    Strand, Katherine; Brenner, Brenda

    2017-01-01

    Research conducted on the development of expressive performance capabilities suggests that children can learn to demonstrate expressiveness in their music-making. Expressivity includes musical interpretation, performance technique, and musical and personal creativity. This article examines creativity as an important component of musical…

  20. 75 FR 80561 - Community Express Pilot Program

    Science.gov (United States)

    2010-12-22

    ... Community Express Lenders have increased program risk. Based on the issues identified above, the central... Express Pilot Program was established in 1999 and was based on the Agency's SBA Express Program. Lenders..., participating lenders must arrange and, when necessary, pay for appropriate management and technical assistance...

  1. Development of gene expression assays measuring immune ...

    African Journals Online (AJOL)

    Using qPCR, the relative expression stability of the reference genes ACTB, GAPDH, YWHAZ and TBP in these samples was determined as well as the mean fold change in the expression of IFNG, CXCL8, CXCL9, CXCL10 and CXCL11 in M. bovis-antigen stimulated blood. The expression of YWHAZ and TBP showed ...

  2. Expressing Model Constraints Visually with VMQL

    DEFF Research Database (Denmark)

    Störrle, Harald

    2011-01-01

    ) for specifying constraints on UML models. We examine VMQL's usability by controlled experiments and its expressiveness by a representative sample. We conclude that VMQL is less expressive than OCL, although expressive enough for most of the constraints in the sample. In terms of usability, however, VMQL......OCL is the de facto standard language for expressing constraints and queries on UML models. However, OCL expressions are very difficult to create, understand, and maintain, even with the sophisticated tool support now available. In this paper, we propose to use the Visual Model Query Language (VMQL...

  3. Podoplanin Expression in Canine Melanoma.

    Science.gov (United States)

    Ogasawara, Satoshi; Honma, Ryusuke; Kaneko, Mika K; Fujii, Yuki; Kagawa, Yumiko; Konnai, Satoru; Kato, Yukinari

    2016-12-01

    A type I transmembrane protein, podoplanin (PDPN), is expressed in several normal cells such as lymphatic endothelial cells or pulmonary type I alveolar cells. We recently demonstrated that anticanine PDPN monoclonal antibody (mAb), PMab-38, recognizes canine PDPN of squamous cell carcinomas, but does not react with lymphatic endothelial cells. Herein, we investigated whether PMab-38 reacts with canine melanoma. PMab-38 reacted with 90% of melanoma cells (9/10 cases) using immunohistochemistry. Of interest, PMab-38 stained the lymphatic endothelial cells and cancer-associated fibroblasts in melanoma tissues, although it did not stain any lymphatic endothelial cells in normal tissues. PMab-38 could be useful for uncovering the function of PDPN in canine melanomas.

  4. Abstract Expression Grammar Symbolic Regression

    Science.gov (United States)

    Korns, Michael F.

    This chapter examines the use of Abstract Expression Grammars to perform the entire Symbolic Regression process without the use of Genetic Programming per se. The techniques explored produce a symbolic regression engine which has absolutely no bloat, which allows total user control of the search space and output formulas, which is faster, and more accurate than the engines produced in our previous papers using Genetic Programming. The genome is an all vector structure with four chromosomes plus additional epigenetic and constraint vectors, allowing total user control of the search space and the final output formulas. A combination of specialized compiler techniques, genetic algorithms, particle swarm, aged layered populations, plus discrete and continuous differential evolution are used to produce an improved symbolic regression sytem. Nine base test cases, from the literature, are used to test the improvement in speed and accuracy. The improved results indicate that these techniques move us a big step closer toward future industrial strength symbolic regression systems.

  5. E-mail: Outlook Express

    Directory of Open Access Journals (Sweden)

    Zainul Bakri

    2012-10-01

    Full Text Available Salah satu layanan Internet yang sangat penting adalah electronic mail atau sering hanya disebut sebagai e-mail. Untuk menggunakan e-mail, diperlukan piranti lunak khusus supaya pengguna dapat mengirim dan menerima e-mail. Jenis piranti lunak e-mail diantaranya adalah Outlook Express yang merupakan satu paket yang didistribusikan bersama Internet Explorer versi 4. Piranti lunak ini dijalankan pada PC yang mempunyai sistem operasi Windows 95 atau 98. Jenis piranti lunak e-mail yang lain adalah Eudora, Pegasus dan sebagainya. Bahkan ada yang diintegrasikan dengan Web Browser (alat untuk menelusuri situs Web misalnya IE,dan Netscape.Sebagai layaknya pelayanan pos, maka setiap pengguna e-mail mempunyai alamat tertentu yang tidak mungkin dipunyai oleh pengguna lainnya diseluruh dunia. Untuk keperluan pendistribusian, maka e-mail mempunyai semacam kantor pos yang ditempatkan dalam sebuah komputer server (mail server atau sering disebut sebagai host. 

  6. Definition, Detection and Generation of Iyashi Expressions

    Science.gov (United States)

    Kitaoka, Tetsuko; Diago, Luis A.; Hagiwara, Ichiro; Kitazaki, Satoshi; Yamane, Shigeru

    This paper concerns the engineering analysis of “Iyashi”, a peculiar concept to the Japanese, which affect person's heart and may change their expression and behavior. We have integrated the advocator's view of “Iyashi”, analyzed the social background of “Iyashi” and have defined Iyashi and also the Iyashi expression. As the facial expression is the special and important stimulus for both observers and people who show expressions, we want to prove the existence of expressions that change the observer's emotion with Iyashi. We have developed the system to clarify the combination of facial features important for Iyashi through the psychological experiments and the analysis by Holographic Neural Networks (HNN). HNN analysis gave the structure of the Iyashi expression, that is the important combination of the physical facial parameters contributing to the high degree of Iyashi. Based on the structure of Iyashi we are able to generate the Iyashi expression appropriate for each person.

  7. Adaptive Evolution of Gene Expression in Drosophila

    Directory of Open Access Journals (Sweden)

    Armita Nourmohammad

    2017-08-01

    Full Text Available Gene expression levels are important quantitative traits that link genotypes to molecular functions and fitness. In Drosophila, population-genetic studies have revealed substantial adaptive evolution at the genomic level, but the evolutionary modes of gene expression remain controversial. Here, we present evidence that adaptation dominates the evolution of gene expression levels in flies. We show that 64% of the observed expression divergence across seven Drosophila species are adaptive changes driven by directional selection. Our results are derived from time-resolved data of gene expression divergence across a family of related species, using a probabilistic inference method for gene-specific selection. Adaptive gene expression is stronger in specific functional classes, including regulation, sensory perception, sexual behavior, and morphology. Moreover, we identify a large group of genes with sex-specific adaptation of expression, which predominantly occurs in males. Our analysis opens an avenue to map system-wide selection on molecular quantitative traits independently of their genetic basis.

  8. Adolescents' misinterpretation of health risk probability expressions.

    Science.gov (United States)

    Cohn, L D; Schydlower, M; Foley, J; Copeland, R L

    1995-05-01

    To determine if differences exist between adolescents and physicians in their numerical translation of 13 commonly used probability expressions (eg, possibly, might). Cross-sectional. Adolescent medicine and pediatric orthopedic outpatient units. 150 adolescents and 51 pediatricians, pediatric orthopedic surgeons, and nurses. Numerical ratings of the degree of certainty implied by 13 probability expressions (eg, possibly, probably). Adolescents were significantly more likely than physicians to display comprehension errors, reversing or equating the meaning of terms such as probably/possibly and likely/possibly. Numerical expressions of uncertainty (eg, 30% chance) elicited less variability in ratings than lexical expressions of uncertainty (eg, possibly). Physicians should avoid using probability expressions such as probably, possibly, and likely when communicating health risks to children and adolescents. Numerical expressions of uncertainty may be more effective for conveying the likelihood of an illness than lexical expressions of uncertainty (eg, probably).

  9. Cyclooxygenase-2 expression in the normal human eye and its expression pattern in selected eye tumours

    DEFF Research Database (Denmark)

    Wang, Jinmei; Wu, Yazhen; Heegaard, Steffen

    2011-01-01

    and retina. The COX-2 expression was less in tumours deriving from the ciliary epithelium and also in retinoblastoma. Conclusion: Cyclooxygenase-2 is constitutively expressed in normal human eyes. The expression of COX-2 is much lower in selected eye tumours involving COX-2 expressing cells....

  10. Cyclooxygenase-2 expression in the normal human eye and its expression pattern in selected eye tumours

    DEFF Research Database (Denmark)

    Wang, Jinmei; Wu, Yazhen; Heegaard, Steffen

    2011-01-01

    and retina. The COX-2 expression was less in tumours deriving from the ciliary epithelium and also in retinoblastoma. Conclusion: Cyclooxygenase-2 is constitutively expressed in normal human eyes. The expression of COX-2 is much lower in selected eye tumours involving COX-2 expressing cells.......Purpose: Cyclooxygenase-2 (COX-2) is an enzyme involved in neoplastic processes. The purpose of the present study is to investigate COX-2 expression in the normal human eye and the expression pattern in selected eye tumours involving COX-2 expressing cells. Methods: Immunohistochemical staining...... using antibodies against COX-2 was performed on paraffin sections of normal human eyes and selected eye tumours arising from cells expressing COX-2. Results: Cyclooxygenase-2 expression was found in various structures of the normal eye. Abundant expression was seen in the cornea, iris, ciliary body...

  11. Hyper-inducible expression system for streptomycetes

    Science.gov (United States)

    Herai, Sachio; Hashimoto, Yoshiteru; Higashibata, Hiroki; Maseda, Hideaki; Ikeda, Haruo; Ōmura, Satoshi; Kobayashi, Michihiko

    2004-01-01

    Streptomycetes produce useful enzymes and a wide variety of secondary metabolites with potent biological activities (e.g., antibiotics, immunosuppressors, pesticides, etc.). Despite their importance in the pharmaceutical and agrochemical fields, there have been no reports for practical expression systems in streptomycetes. Here, we developed a “PnitA-NitR” system for regulatory gene expression in streptomycetes based on the expression mechanism of Rhodococcus rhodochrous J1 nitrilase, which is highly induced by an inexpensive and safe inducer, ε-caprolactam. Heterologous protein expression experiments demonstrated that the system allowed suppressed basal expression and hyper-inducible expression, yielding target protein levels of as high as ≈40% of all soluble protein. Furthermore, the system functioned in important streptomycete strains. Thus, the PnitA-NitR system should be a powerful tool for improving the productivity of various useful products in streptomycetes. PMID:15377796

  12. Recognizing Facial Expressions Automatically from Video

    Science.gov (United States)

    Shan, Caifeng; Braspenning, Ralph

    Facial expressions, resulting from movements of the facial muscles, are the face changes in response to a person's internal emotional states, intentions, or social communications. There is a considerable history associated with the study on facial expressions. Darwin [22] was the first to describe in details the specific facial expressions associated with emotions in animals and humans, who argued that all mammals show emotions reliably in their faces. Since that, facial expression analysis has been a area of great research interest for behavioral scientists [27]. Psychological studies [48, 3] suggest that facial expressions, as the main mode for nonverbal communication, play a vital role in human face-to-face communication. For illustration, we show some examples of facial expressions in Fig. 1.

  13. "Express yourself": culture and the effect of self-expression on choice.

    Science.gov (United States)

    Kim, Heejung S; Sherman, David K

    2007-01-01

    Whereas self-expression is valued in the United States, it is not privileged with such a cultural emphasis in East Asia. Four studies demonstrate the psychological implications of this cultural difference. Studies 1 and 2 found that European Americans value self-expression more than East Asians/East Asian Americans. Studies 3 and 4 examined the roles of expression in preference judgments. In Study 3, the expression of choice led European Americans but not East Asian Americans to be more invested in what they chose. Study 4 examined the connection between the value of expression and the effect of choice expression and showed that European Americans place greater emphasis on self-expression than East Asian Americans, and this difference explained the cultural difference in Study 3. This research highlights the importance of the cultural meanings of self-expression and the moderating role of cultural beliefs on the psychological effect of self-expression. 2007 APA, all rights reserved

  14. Willingness to Express Emotions to Caregiving Spouses

    OpenAIRE

    Monin, Joan K.; Martire, Lynn M.; Schulz, Richard; Clark, Margaret S.

    2009-01-01

    This study examined the association between care-recipients’ willingness to express emotions to spousal caregivers and caregiver’s well-being and support behaviors. Using self-report measures in the context of a larger study, 262 care-recipients with osteoarthritis reported on their willingness to express emotions to caregivers, and caregivers reported on their stress and insensitive responding to care-recipients. Results revealed that care-recipients’ willingness to express happiness was ass...

  15. PLANEX: the plant co-expression database.

    Science.gov (United States)

    Yim, Won Cheol; Yu, Yongbin; Song, Kitae; Jang, Cheol Seong; Lee, Byung-Moo

    2013-05-20

    The PLAnt co-EXpression database (PLANEX) is a new internet-based database for plant gene analysis. PLANEX (http://planex.plantbioinformatics.org) contains publicly available GeneChip data obtained from the Gene Expression Omnibus (GEO) of the National Center for Biotechnology Information (NCBI). PLANEX is a genome-wide co-expression database, which allows for the functional identification of genes from a wide variety of experimental designs. It can be used for the characterization of genes for functional identification and analysis of a gene's dependency among other genes. Gene co-expression databases have been developed for other species, but gene co-expression information for plants is currently limited. We constructed PLANEX as a list of co-expressed genes and functional annotations for Arabidopsis thaliana, Glycine max, Hordeum vulgare, Oryza sativa, Solanum lycopersicum, Triticum aestivum, Vitis vinifera and Zea mays. PLANEX reports Pearson's correlation coefficients (PCCs; r-values) that distribute from a gene of interest for a given microarray platform set corresponding to a particular organism. To support PCCs, PLANEX performs an enrichment test of Gene Ontology terms and Cohen's Kappa value to compare functional similarity for all genes in the co-expression database. PLANEX draws a cluster network with co-expressed genes, which is estimated using the k-mean method. To construct PLANEX, a variety of datasets were interpreted by the IBM supercomputer Advanced Interactive eXecutive (AIX) in a supercomputing center. PLANEX provides a correlation database, a cluster network and an interpretation of enrichment test results for eight plant species. A typical co-expressed gene generates lists of co-expression data that contain hundreds of genes of interest for enrichment analysis. Also, co-expressed genes can be identified and cataloged in terms of comparative genomics by using the 'Co-expression gene compare' feature. This type of analysis will help interpret

  16. Identification of Emotional Facial Expressions: Effects of Expression, Intensity, and Sex on Eye Gaze.

    Directory of Open Access Journals (Sweden)

    Laura Jean Wells

    Full Text Available The identification of emotional expressions is vital for social interaction, and can be affected by various factors, including the expressed emotion, the intensity of the expression, the sex of the face, and the gender of the observer. This study investigates how these factors affect the speed and accuracy of expression recognition, as well as dwell time on the two most significant areas of the face: the eyes and the mouth. Participants were asked to identify expressions from female and male faces displaying six expressions (anger, disgust, fear, happiness, sadness, and surprise, each with three levels of intensity (low, moderate, and normal. Overall, responses were fastest and most accurate for happy expressions, but slowest and least accurate for fearful expressions. More intense expressions were also classified most accurately. Reaction time showed a different pattern, with slowest response times recorded for expressions of moderate intensity. Overall, responses were slowest, but also most accurate, for female faces. Relative to male observers, women showed greater accuracy and speed when recognizing female expressions. Dwell time analyses revealed that attention to the eyes was about three times greater than on the mouth, with fearful eyes in particular attracting longer dwell times. The mouth region was attended to the most for fearful, angry, and disgusted expressions and least for surprise. These results extend upon previous findings to show important effects of expression, emotion intensity, and sex on expression recognition and gaze behaviour, and may have implications for understanding the ways in which emotion recognition abilities break down.

  17. Profiling Gene Expression in Germinating Brassica Roots.

    Science.gov (United States)

    Park, Myoung Ryoul; Wang, Yi-Hong; Hasenstein, Karl H

    2014-01-01

    Based on previously developed solid-phase gene extraction (SPGE) we examined the mRNA profile in primary roots of Brassica rapa seedlings for highly expressed genes like ACT7 (actin7), TUB (tubulin1), UBQ (ubiquitin), and low expressed GLK (glucokinase) during the first day post-germination. The assessment was based on the mRNA load of the SPGE probe of about 2.1 ng. The number of copies of the investigated genes changed spatially along the length of primary roots. The expression level of all genes differed significantly at each sample position. Among the examined genes ACT7 expression was most even along the root. UBQ was highest at the tip and root-shoot junction (RS). TUB and GLK showed a basipetal gradient. The temporal expression of UBQ was highest in the MZ 9 h after primary root emergence and higher than at any other sample position. Expressions of GLK in EZ and RS increased gradually over time. SPGE extraction is the result of oligo-dT and oligo-dA hybridization and the results illustrate that SPGE can be used for gene expression profiling at high spatial and temporal resolution. SPGE needles can be used within two weeks when stored at 4 °C. Our data indicate that gene expression studies that are based on the entire root miss important differences in gene expression that SPGE is able to resolve for example growth adjustments during gravitropism.

  18. Examining emotional expressions in discourse: methodological considerations

    Science.gov (United States)

    Hufnagel, Elizabeth; Kelly, Gregory J.

    2017-10-01

    This methodological paper presents an approach for examining emotional expressions through discourse analysis and ethnographic methods. Drawing on trends in the current literature in science education, we briefly explain the importance of emotions in science education and examine the current research methodologies used in interactional emotion studies. We put forth and substantiate a methodological approach that attends to the interactional, contextual, intertextual, and consequential aspects of emotional expressions. By examining emotional expressions in the discourse in which they are constructed, emotional expressions are identified through semantics, contextualization, and linguistic features. These features make salient four dimensions of emotional expressions: aboutness, frequency, type, and ownership. Drawing on data from a large empirical study of pre-service elementary teachers' emotional expressions about climate change in a science course, we provide illustrative examples to describe what counts as emotional expressions in situ. In doing so we explain how our approach makes salient the nuanced nature of such expressions as well as the broader discourse in which they are constructed and the implications for researching emotional expressions in science education discourse. We suggest reasons why this discourse orientated research methodology can contribute to the interactional study of emotions in science education contexts.

  19. Judgments of subtle facial expressions of emotion.

    Science.gov (United States)

    Matsumoto, David; Hwang, Hyisung C

    2014-04-01

    Most studies on judgments of facial expressions of emotion have primarily utilized prototypical, high-intensity expressions. This paper examines judgments of subtle facial expressions of emotion, including not only low-intensity versions of full-face prototypes but also variants of those prototypes. A dynamic paradigm was used in which observers were shown a neutral expression followed by the target expression to judge, and then the neutral expression again, allowing for a simulation of the emergence of the expression from and then return to a baseline. We also examined how signal and intensity clarities of the expressions (explained more fully in the Introduction) were associated with judgment agreement levels. Low-intensity, full-face prototypical expressions of emotion were judged as the intended emotion at rates significantly greater than chance. A number of the proposed variants were also judged as the intended emotions. Both signal and intensity clarities were individually associated with agreement rates; when their interrelationships were taken into account, signal clarity independently predicted agreement rates but intensity clarity did not. The presence or absence of specific muscles appeared to be more important to agreement rates than their intensity levels, with the exception of the intensity of zygomatic major, which was positively correlated with agreement rates for judgments of joy.

  20. Automatic emotional expression analysis from eye area

    Science.gov (United States)

    Akkoç, Betül; Arslan, Ahmet

    2015-02-01

    Eyes play an important role in expressing emotions in nonverbal communication. In the present study, emotional expression classification was performed based on the features that were automatically extracted from the eye area. Fırst, the face area and the eye area were automatically extracted from the captured image. Afterwards, the parameters to be used for the analysis through discrete wavelet transformation were obtained from the eye area. Using these parameters, emotional expression analysis was performed through artificial intelligence techniques. As the result of the experimental studies, 6 universal emotions consisting of expressions of happiness, sadness, surprise, disgust, anger and fear were classified at a success rate of 84% using artificial neural networks.

  1. 5-PGDH expression in breast cancer cells

    Directory of Open Access Journals (Sweden)

    M. A. Taipov

    2014-01-01

    Full Text Available This paper analyzes 15-PGDH gene expression in the human breast cancer (BC cell liness and describes the molecular principles through which the expression of the enzyme 15-PGDH is controlled in the tumor cells with a varying metastatic potential. There is an inverse correla- tion of 15-PGDH gene expression with COX-2 expression and the metastatic potential of tumor cells. Investigation of mechanisms for 15-PGDH regulation opens up new vistas and possibilities for the design of effective drugs for the targeted therapy of metastatic forms of BC.

  2. Modulation of gene expression made easy

    DEFF Research Database (Denmark)

    Solem, Christian; Jensen, Peter Ruhdal

    2002-01-01

    A new approach for modulating gene expression, based on randomization of promoter (spacer) sequences, was developed. The method was applied to chromosomal genes in Lactococcus lactis and shown to generate libraries of clones with broad ranges of expression levels of target genes. In one example...... that the method can be applied to modulating the expression of native genes on the chromosome. We constructed a series of strains in which the expression of the las operon, containing the genes pfk, pyk, and ldh, was modulated by integrating a truncated copy of the pfk gene. Importantly, the modulation affected...

  3. Cerebrovascular gene expression in spontaneously hypertensive rats

    DEFF Research Database (Denmark)

    Grell, Anne-Sofie; Frederiksen, Simona Denise; Edvinsson, Lars

    2017-01-01

    in the middle cerebral arteries from hypertensive compared to normotensive rats. The gene expression of 72 genes was decreased and the gene expression of 97 genes was increased. The following genes with a fold difference ≥1.40 were verified by quantitative PCR; Postn, Olr1, Fas, Vldlr, Mmp2, Timp1, Serpine1......, Mmp11, Cd34, Ptgs1 and Ptgs2. The gene expression of Postn, Olr1, Fas, Vldlr, Mmp2, Timp1 and Serpine1 and the protein expression of LOX1 (also known as OLR1) were significantly increased in the middle cerebral arteries from spontaneously hypertensive rats compared to Wistar-Kyoto rats. In conclusion...

  4. TRPM4 protein expression in prostate cancer

    DEFF Research Database (Denmark)

    Berg, Kasper Drimer; Soldini, Davide; Jung, Maria

    2016-01-01

    BACKGROUND: Transient receptor potential cation channel, subfamily M, member 4 (TRPM4) messenger RNA (mRNA) has been shown to be upregulated in prostate cancer (PCa) and might be a new promising tissue biomarker. We evaluated TRPM4 protein expression and correlated the expression level.......79-2.62; p = 0.01-0.03 for the two observers) when compared to patients with a lower staining intensity. CONCLUSIONS: TRPM4 protein expression is widely expressed in benign and cancerous prostate tissue, with highest staining intensities found in PCa. Overexpression of TRPM4 in PCa (combination of high...

  5. GLUT-1 Expression in Pancreatic Neoplasia

    Science.gov (United States)

    Basturk, Olca; Singh, Rajendra; Kaygusuz, Ecmel; Balci, Serdar; Dursun, Nevra; Culhaci, Nil; Adsay, N. Volkan

    2011-01-01

    Objectives GLUT-1 has been found to have an important role in the upregulation of various cellular pathways and implicated in neoplastic transformation correlating with biological behavior in malignancies. However, literature regarding the significance of GLUT-1 expression in pancreatic neoplasia has been limited and controversial. Methods Immunohistochemical expression of GLUT-1 was tested in a variety of pancreatic neoplasia including ductal adenocarcinomas (DAs), pancreatic intraepithelial neoplasms (PanINs), intraductal papillary mucinous neoplasms (IPMNs), and serous cystadenomas. Results There was a progressive increase in the expression of GLUT-1 from low- to higher-grade dysplastic lesions: All higher-grade PanINs/IPMNs (the ones with moderate/high-grade dysplasia) revealed noticeable GLUT-1 expression. Among the 94 DAs analyzed, there were minimal/moderate expression in 46 and significant expression in 24 DAs. However, all 4 clear-cell variants of DAs revealed significant GLUT-1 immunolabeling, as did areas of clear-cell change seen in other DAs. Moreover, all 12 serous cystadenomas expressed significant GLUT-1. GLUT-1 expression was also directly correlated with DA histological grade (P = 0.016) and tumor size (P = 0.03). Conclusions GLUT-1 may give rise to the distinctive clear-cell appearance of these tumors by inducing the accumulation of glycogen in the cytoplasm. Additionally, because GLUT-1 expression was related to histological grade and tumor size of DA, further studies are warranted to investigate the association of GLUT-1 with prognosis and tumor progression. PMID:21206329

  6. Expression of CD133 in acute leukemia.

    Science.gov (United States)

    Tolba, Fetnat M; Foda, Mona E; Kamal, Howyda M; Elshabrawy, Deena A

    2013-06-01

    There have been conflicting results regarding a correlation between CD133 expression and disease outcome. To assess CD133 expression in patients with acute myeloid leukemia (AML) and acute lymphoblastic leukemia (ALL) and to evaluate its correlation with the different clinical and laboratory data as well as its relation to disease outcome, the present study included 60 newly diagnosed acute leukemic patients; 30 ALL patients with a male to female ratio of 1.5:1 and their ages ranged from 9 months to 48 years, and 30 AML patients with a male to female ratio of 1:1 and their ages ranged from 17 to 66 years. Flow cytometric assessment of CD133 expression was performed on blast cells. In ALL, no correlations were elicited between CD133 expression and some monoclonal antibodies, but in AML group, there was a significant positive correlation between CD133 and HLA-DR, CD3, CD7 and TDT, CD13 and CD34. In ALL group, patients with negative CD133 expression achieved complete remission more than patients with positive CD133 expression. In AML group, there was no statistically significant association found between positive CD133 expression and treatment outcome. The Kaplan-Meier curve illustrated a high significant negative correlation between CD133 expression and the overall survival of the AML patients. CD133 expression is an independent prognostic factor in acute leukemia, especially ALL patients and its expression could characterize a group of acute leukemic patients with higher resistance to standard chemotherapy and relapse. CD133 expression was highly associated with poor prognosis in acute leukemic patients.

  7. Expression of periostin in breast cancer cells.

    Science.gov (United States)

    Ratajczak-Wielgomas, Katarzyna; Grzegrzolka, Jedrzej; Piotrowska, Aleksandra; Matkowski, Rafal; Wojnar, Andrzej; Rys, Janusz; Ugorski, Maciej; Dziegiel, Piotr

    2017-10-01

    Periostin (POSTN) is a protein involved in multiple processes important for cancer development, both at the stage of cancer initiation and progression, as well as metastasis. The aim of this study was to determine the expression of POSTN in the cells of non-invasive ductal breast carcinoma in situ (DCIS) and invasive ductal carcinoma (IDC) and to correlate it with clinicopathological data. Immunohistochemical studies (IHC) were conducted on 21 cases of fibrocystic breast change (FC), 44 cases of DCIS and 92 cases of IDC. POSTN expression at mRNA (real-time PCR) and protein level (western blot analysis) was also confirmed in selected breast cancer cell lines (MCF-7, SK-BR-3, MDA-MB-231 and BO2). Statistically significant higher level of POSTN expression in IDC and DCIS cancer cells compared to FC was noted. Also, the level of POSTN expression in the cytoplasm of IDC cells was shown to increase with the increasing degree of tumour malignancy (G) and significantly higher expression of POSTN was observed in each degree of tumour malignancy (G) relative to FC. Statistically significant higher POSTN expression was observed in tumours with estrogen receptor-negative (ER-) and progesterone receptor-negative (PR-) phenotypes in comparison to estrogen receptor-positive (ER+) and progesterone receptor-positive (PR+) cases, as well as significant negative correlation between POSTN expression in cancer cells and expression of ER and PR (p<0.05). Additionally, statistically significant differences in POSTN expression were shown between particular breast cancer cell lines, both at mRNA and protein level. Observed POSTN expression was the lowest in the case of MCF-7, and the highest in MDA-MB-231 and BO2 of the most aggressive potential clinically corresponding to G3 tumours. POSTN expression in the cytoplasm of IDC cancer cells may play an important role in cancer transformation mechanism.

  8. Prediction of the gene expression in normal lung tissue by the gene expression in blood.

    Science.gov (United States)

    Halloran, Justin W; Zhu, Dakai; Qian, David C; Byun, Jinyoung; Gorlova, Olga Y; Amos, Christopher I; Gorlov, Ivan P

    2015-11-17

    Comparative analysis of gene expression in human tissues is important for understanding the molecular mechanisms underlying tissue-specific control of gene expression. It can also open an avenue for using gene expression in blood (which is the most easily accessible human tissue) to predict gene expression in other (less accessible) tissues, which would facilitate the development of novel gene expression based models for assessing disease risk and progression. Until recently, direct comparative analysis across different tissues was not possible due to the scarcity of paired tissue samples from the same individuals. In this study we used paired whole blood/lung gene expression data from the Genotype-Tissue Expression (GTEx) project. We built a generalized linear regression model for each gene using gene expression in lung as the outcome and gene expression in blood, age and gender as predictors. For ~18 % of the genes, gene expression in blood was a significant predictor of gene expression in lung. We found that the number of single nucleotide polymorphisms (SNPs) influencing expression of a given gene in either blood or lung, also known as the number of quantitative trait loci (eQTLs), was positively associated with efficacy of blood-based prediction of that gene's expression in lung. This association was strongest for shared eQTLs: those influencing gene expression in both blood and lung. In conclusion, for a considerable number of human genes, their expression levels in lung can be predicted using observable gene expression in blood. An abundance of shared eQTLs may explain the strong blood/lung correlations in the gene expression.

  9. Sad Facial Expressions Increase Choice Blindness

    Directory of Open Access Journals (Sweden)

    Yajie Wang

    2018-01-01

    Full Text Available Previous studies have discovered a fascinating phenomenon known as choice blindness—individuals fail to detect mismatches between the face they choose and the face replaced by the experimenter. Although previous studies have reported a couple of factors that can modulate the magnitude of choice blindness, the potential effect of facial expression on choice blindness has not yet been explored. Using faces with sad and neutral expressions (Experiment 1 and faces with happy and neutral expressions (Experiment 2 in the classic choice blindness paradigm, the present study investigated the effects of facial expressions on choice blindness. The results showed that the detection rate was significantly lower on sad faces than neutral faces, whereas no significant difference was observed between happy faces and neutral faces. The exploratory analysis of verbal reports found that participants who reported less facial features for sad (as compared to neutral expressions also tended to show a lower detection rate of sad (as compared to neutral faces. These findings indicated that sad facial expressions increased choice blindness, which might have resulted from inhibition of further processing of the detailed facial features by the less attractive sad expressions (as compared to neutral expressions.

  10. Artistic Expression: Another Challenge for Rural Education

    Directory of Open Access Journals (Sweden)

    Sonia Álvarez-Castro

    2012-12-01

    Full Text Available This paper identifies the parameters required to create opportunities that would strengthen the social fabric and would promote a comprehensive development through the artistic expression as a method for expressing feelings and constructing –cultural and social– identities as individuals, which, in our global context have been eroded by the homogenization of experiences.

  11. Intrahepatic expression of interferon alpha & interferon alpha ...

    African Journals Online (AJOL)

    kemrilib

    Alpha m-RNA while 30% only expressed Interferon Alpha Receptor m-RNA. Responders and non-responders to Interferon therapy ... expression of IFN Alpha Receptor mRNA. Regardless of the response to interferon, histological .... generation reverse hybridisation, line probe assay. (Inno-LiPA HCV II; Innogenetics, Ghent,.

  12. Expressions Shared by Vietnamese in America.

    Science.gov (United States)

    Chan, Carole

    This document is a collection of a list of expressions shared by Vietnamese immigrants who have entered the United States. The expressions concern the following topics: names, formality, cultural influences, touching, tact and diplomacy, shared life, open houses, social standards, manual labor, fatalism, and adaptability. (Author/AM)

  13. Predictable tuning of protein expression in bacteria

    DEFF Research Database (Denmark)

    Bonde, Mads; Pedersen, Margit; Klausen, Michael Schantz

    2016-01-01

    We comprehensively assessed the contribution of the Shine-Dalgarno sequence to protein expression and used the data to develop EMOPEC (Empirical Model and Oligos for Protein Expression Changes; http://emopec.biosustain.dtu.dk). EMOPEC is a free tool that makes it possible to modulate the expressi...

  14. Behavior, Experience and Expression: Some Research Considerations.

    Science.gov (United States)

    Romanyshyn, Robert D.

    Utilizing research conducted on nostalgia, this paper shows how a phenomenological approach assists in understanding behavior, experience and expression. Moreover, a clearer understanding of them aids one's research with and comprehension of nostalgia. Human action can be studied from the experiential, behavioral and expressive perspectives. These…

  15. Gene Expression and Microarray Investigation of Dendrobium ...

    African Journals Online (AJOL)

    Result: Between the diabetic rat group and the wild-type group, 1339 functional genes showed differences in expression levels (p < 0.05). ... Genes whose expression normalized were mainly those affected by the disease state and associated with glucose and lipid metabolism, cell growth, apoptosis, biosynthesis, olfactory ...

  16. Original article Semiquantitative Smoothelin Expression in Detection ...

    African Journals Online (AJOL)

    mn

    and Sohag Universities from January. 2009 to June 2009. Fig. 1: Immunostaining of smoothelin in MM of cystectomy specimen showing weak positivity. (IHC, original magnification x100). Fig. 2: Smoothelin expression in MP invaded by nests of tumor cells showing strong smoothelin expression. (IHC, original magnification ...

  17. Automating InDesign with Regular Expressions

    CERN Document Server

    Kahrel, Peter

    2006-01-01

    If you need to make automated changes to InDesign documents beyond what basic search and replace can handle, you need regular expressions, and a bit of scripting to make them work. This Short Cut explains both how to write regular expressions, so you can find and replace the right things, and how to use them in InDesign specifically.

  18. Kivy and Langer on expressiveness in music

    NARCIS (Netherlands)

    van der Schoot, A.

    2013-01-01

    From 1980 onwards, Peter Kivy has put forward that music does not so much express emotions but rather is expressive of emotions. The character of the music does not represent the character or mood of the composer, but reflects his knowledge of emotional life. Unfortunately, Kivy fails to give credit

  19. Processing Idiomatic Expressions: Effects of Semantic Compositionality

    Science.gov (United States)

    Tabossi, Patrizia; Fanari, Rachele; Wolf, Kinou

    2008-01-01

    Three experiments tested the main claims of the idiom decomposition hypothesis: People have clear intuitions on the semantic compositionality of idiomatic expressions, which determines the syntactic behavior of these expressions and how they are recognized. Experiment 1 showed that intuitions are clear only for a very restricted number of…

  20. Dihydrotestostenone increase the gene expression of androgen ...

    African Journals Online (AJOL)

    HNTEP cells were grown in basal medium and treated with DHT in different conditions. HNTEP cells under treatment with DHT (10-13 M) induced an increase in FHL-2 expression. In turn, high DHT concentrations (10-8 M) induced an increase in the expression SHP-1. The present data suggest that the SHP-1 and FHL-2 ...

  1. A Robot with Complex Facial Expressions

    Directory of Open Access Journals (Sweden)

    J. Takeno

    2009-08-01

    Full Text Available The authors believe that the consciousness of humans basically originates from languages and their association-like flow of consciousness, and that feelings are generated accompanying respective languages. We incorporated artificial consciousness into a robot; achieved an association flow of language like flow of consciousness; and developed a robot called Kansei that expresses its feelings according to the associations occurring in the robot. To be able to fully communicate with humans, robots must be able to display complex expressions, such as a sense of being thrilled. We therefore added to the Kansei robot a device to express complex feelings through its facial expressions. The Kansei robot is actually an artificial skull made of aluminum, with servomotors built into it. The face is made of relatively soft polyethylene, which is formed to appear like a human face. Facial expressions are generated using 19 servomotors built into the skull, which pull metal wires attached to the facial “skin” to create expressions. The robot at present is capable of making six basic expressions as well as complex expressions, such as happiness and fear combined.

  2. Construction of expression vectors carrying mouse peroxisomal ...

    African Journals Online (AJOL)

    The aim of this study was to construct expression vectors carrying mouse peroxisomal protein gene (PEP-cDNA) in prokaryotic and mammalian expression vectors in ... pGEX6p2-PEP and pUcD3-FLAG-PEP constructed vectors were transformed into the one shot TOP10 and JM105 bacterial competent cells, respectively.

  3. Expression and Purification of Soluble, Biologically Active ...

    African Journals Online (AJOL)

    Expression and Purification of Soluble, Biologically Active Recombinant Dipeptidyl Peptidase 4 (DPP4/CD26/ADAbp) Comprising the Extracellular Domain in the Yeast, Pichia ... Purpose: To investigate Pichia pastoris expression system for producing clinically usable, high-quality dipeptidyl peptidase 4 recombinant protein.

  4. Advanced Stellar Compass - Alenia Mars Express

    DEFF Research Database (Denmark)

    Kilsgaard, Søren; Betto, Maurizio; Jørgensen, John Leif

    1998-01-01

    This document, submitted in reply to an Alenia R.f.P., is a proposal to implement the Advanced Stellar Compass (ASC) in the Mars Express mission.The Mars Express is an ESA dedicated mission to Mars scientific investigation.The ASC is a very advanced instrument designed by the Space Instrumentation...

  5. Foxp3 expression in human cancer cells

    Directory of Open Access Journals (Sweden)

    Gourgoulianis Konstantinos I

    2008-04-01

    Full Text Available Abstract Objective Transcription factor forkhead box protein 3 (Foxp3 specifically characterizes the thymically derived naturally occurring regulatory T cells (Tregs. Limited evidence indicates that it is also expressed, albeit to a lesser extent, in tissues other than thymus and spleen, while, very recently, it was shown that Foxp3 is expressed by pancreatic carcinoma. This study was scheduled to investigate whether expression of Foxp3 transcripts and mature protein occurs constitutively in various tumor types. Materials and methods Twenty five tumor cell lines of different tissue origins (lung cancer, colon cancer, breast cancer, melanoma, erythroid leukemia, acute T-cell leukemia were studied. Detection of Foxp3 mRNA was performed using both conventional RT-PCR and quantitative real-time PCR while protein expression was assessed by immunocytochemistry and flow cytometry, using different antibody clones. Results Foxp3 mRNA as well as Foxp3 protein was detected in all tumor cell lines, albeit in variable levels, not related to the tissue of origin. This expression correlated with the expression levels of IL-10 and TGFb1. Conclusion We offer evidence that Foxp3 expression, characterizes tumor cells of various tissue origins. The biological significance of these findings warrants further investigation in the context of tumor immune escape, and especially under the light of current anti-cancer efforts interfering with Foxp3 expression.

  6. Transiently expressed pattern during myogenesis and candidate ...

    Indian Academy of Sciences (India)

    KE HE

    be the potential binding sites of muscle regulatory factors (MRFs)), and the dN/dS ratio indicated purifying selection acting on this gene, facilitating conservatism in vertebrates. Q-PCR indicated Tmem8C had a peak expression pattern, reaching its highest expression levels in stage E15 in LM and E19 in BM, and then ...

  7. Expression of conserved signalling pathway genes during

    Indian Academy of Sciences (India)

    Hence, we analysed the expression of Notch, Wnt and Sonic Hedgehog (Shh) pathway genes during differentiation of R1 cells into early vascular lineages. Notch-, Wnt-and Shh-mediated signalling is important during embryonic development. Regulation of gene expression through these signalling molecules is a frequently ...

  8. Varicose veins show enhanced chemokine expression.

    Science.gov (United States)

    Solá, L del Rio; Aceves, M; Dueñas, A I; González-Fajardo, J A; Vaquero, C; Crespo, M Sanchez; García-Rodríguez, C

    2009-11-01

    Leucocyte infiltration in the wall of varicose veins has been reported previously. This study was designed to investigate the expression of pro-inflammatory cytokines and chemokines in control and in patients with varicose veins and to test the effect of treating varicose vein patients with acetylsalicylic acid (ASA) on cytokine expression prior to removal of varices. Sections of vein were removed during operation from both patient groups, and ribonuclease protection assays (RPAs) were performed to assess the expression of chemokines. Group I included non-varicose saphenous veins from healthy patients undergoing amputation for trauma. Varicose veins were obtained from patients with primary varicose undergoing surgical treatment who received no drug (group II) or treatment with 300 mg day(-1) of ASA for 15 days before surgery (group III). Non-varicose veins constitutively expressed low levels of monocyte-chemoattractant protein (MCP-1) and interleukin (IL)-8 mRNA. Varicose veins had a distinct chemokine expression pattern, since significant up-regulation of MCP-1 and IL-8 and a marked expression of IP-10, RANTES, MIP-1alpha and MIP-1beta mRNA were detected. Removal of the endothelium did not alter this pattern. Varicose veins obtained from patients treated with ASA showed a consistent decrease in chemokine expression, although it did not reach statistical significance. Varicose veins showed increased expression of several chemokines compared to control veins. A non-significant reduction of activation was observed following treatment with ASA for 15 days.

  9. Role of facial expressions in social interactions.

    Science.gov (United States)

    Frith, Chris

    2009-12-12

    The expressions we see in the faces of others engage a number of different cognitive processes. Emotional expressions elicit rapid responses, which often imitate the emotion in the observed face. These effects can even occur for faces presented in such a way that the observer is not aware of them. We are also very good at explicitly recognizing and describing the emotion being expressed. A recent study, contrasting human and humanoid robot facial expressions, suggests that people can recognize the expressions made by the robot explicitly, but may not show the automatic, implicit response. The emotional expressions presented by faces are not simply reflexive, but also have a communicative component. For example, empathic expressions of pain are not simply a reflexive response to the sight of pain in another, since they are exaggerated when the empathizer knows he or she is being observed. It seems that we want people to know that we are empathic. Of especial importance among facial expressions are ostensive gestures such as the eyebrow flash, which indicate the intention to communicate. These gestures indicate, first, that the sender is to be trusted and, second, that any following signals are of importance to the receiver.

  10. An expression analysis package for REDUCE

    NARCIS (Netherlands)

    van Hulzen, J.A.; Hulshof, B.J.A.

    1982-01-01

    An expression analysis package for REDUCE 2 is presented. This package, completely written in Standard LISP, can be considered as an extension of the algebraic mode. It allows to interactively dismantled and/or modify the last output expression as it is desplayed or printed. An interface with the

  11. Positron emission tomography : measurement of transgene expression

    NARCIS (Netherlands)

    de Vries, EFJ; Vaalburg, W

    Noninvasive and repetitive imaging of transgene expression can play a pivotal role in the development of gene therapy strategies, as it offers investigators a means to determine the effectiveness of their gene transfection protocols. In the last decade, imaging of transgene expression using positron

  12. Dirichlet expression for L(1, χ )

    Indian Academy of Sciences (India)

    We show that this expression with obvious modification is valid for the general primitive Dirichlet character χ. Keywords. Hurwitz zeta function; Dirichlet character; Dirichlet L-series; primitive character. 1. Introduction. In Dirichlet's famous work dealing with class number formula, the value of L(1,χ) is expressed in terms of finite ...

  13. Characterization and expression analyses of the H ...

    Indian Academy of Sciences (India)

    Conversely, plants subjected to P and K deprivation and drought stress,ScHP1 expression was higher in the roots than leaves. Under all the investigated stress conditions, expression of ScHP1 was lower in the stem than in the leaves and roots. Our results imply that ScHP1 functions under abiotic stress response.

  14. Recombinant E. coli expressing Vitreoscilla haemoglobin prefers ...

    Indian Academy of Sciences (India)

    Overexpression of proteins involved in aerobic metabolic pathways and suppression of proteins involved in non-oxidative metabolic pathways shown in this study indicates that the cells expressing VHb prefer aerobic metabolic pathways even under oxygen limitation. Under these conditions, the expression levels of ...

  15. Recombinant E. coli expressing Vitreoscilla haemoglobin prefers ...

    Indian Academy of Sciences (India)

    Supplementary section 2. KEGG pathway analysis of proteins that were differentially expressed under aerobic and micro- aerobic conditions in VHb expressing E. coli. Pathway. Aerobiosis. Up. Down. Up. Microaerobiosis. Down. Biosynthesis of secondary metabolites (ecx01110). sdhB, pckA, gnd, icdA. purC, glyA. pckA ...

  16. Identification of genes showing differential expression profile ...

    Indian Academy of Sciences (India)

    in pig with genetic propensity for higher growth rate were identified by sequence analysis of 12 differentially expressed clones selected by differential screening following the generation of the subtracted cDNA population. Real-time PCR analysis con- firmed difference in expression profiles of the identified genes in ...

  17. Serial analysis of gene expression (SAGE)

    NARCIS (Netherlands)

    van Ruissen, Fred; Baas, Frank

    2007-01-01

    In 1995, serial analysis of gene expression (SAGE) was developed as a versatile tool for gene expression studies. SAGE technology does not require pre-existing knowledge of the genome that is being examined and therefore SAGE can be applied to many different model systems. In this chapter, the SAGE

  18. Recognition of 3D facial expression dynamics

    NARCIS (Netherlands)

    Sandbach, G.; Zafeiriou, S.; Pantic, Maja; Rueckert, D.

    2012-01-01

    In this paper we propose a method that exploits 3D motion-based features between frames of 3D facial geometry sequences for dynamic facial expression recognition. An expressive sequence is modelled to contain an onset followed by an apex and an offset. Feature selection methods are applied in order

  19. Equilibrium-constant expressions for aqueous plutonium

    International Nuclear Information System (INIS)

    Silver, G.L.

    2010-01-01

    Equilibrium-constant expressions for Pu disproportionation reactions traditionally contain three or four terms representing the concentrations or fractions of the oxidation states. The expressions can be rewritten so that one of the oxidation states is replaced by a term containing the oxidation number of the plutonium. Experimental estimations of the numerical values of the constants can then be checked in several ways. (author)

  20. Abstraction of Invariant Face Expressions in Infancy.

    Science.gov (United States)

    Caron, Rose F.; And Others

    1982-01-01

    To determine whether infants can form face expression categories, groups of infants 18 to 24 weeks old, along with those 30 weeks old, were habituated by the infant control procedure to photographs of four different female faces, each with an identical expression (happiness or surprise). Results are discussed in terms of age and sex differences.…

  1. Explanations for Contempt Expressed Towards Old People.

    Science.gov (United States)

    Maxwell, Eleanor Krassen; Maxwell, Robert J.

    The issue of contempt expressed towards the aged was examined from a cross-cultural perspective. Eight reasons for expressions of contempt emerged from a study of 95 societies drawn from the Standard Cross-Cultural Sample, and were treated as independent variables, with the overall level of contempt as the dependent variable, in a application of…

  2. Osteopontin expression in salivary gland carcinomas

    DEFF Research Database (Denmark)

    Bjørndal, Kristine; Larsen, Stine R; Godballe, Christian

    2011-01-01

    :  Osteopontin was expressed in all salivary gland carcinomas. Adenoid cystic carcinomas had the highest mean sum score (7.3) and a significantly higher proportion of carcinomas with high OPN sum score than both mucoepidermoid carcinoma and acinic cell carcinoma. Correlation of OPN expression with known...

  3. Fermionic expressions for minimal model virasoro characters

    CERN Document Server

    Welsh, Trevor A

    2005-01-01

    Fermionic expressions for all minimal model Virasoro characters $\\chi^{p, p'}_{r, s}$ are stated and proved. Each such expression is a sum of terms of {\\em fundamental fermionic form} type. In most cases, all these terms are written down using certain trees which are constructed for $s$ and $r$ from the Takahashi lengths and truncated Takahashi lengths associated with the continued fraction of $p'/p$. In the remaining cases, in addition to such terms, the fermionic expression for $\\chi^{p, p'}_{r, s}$ contains a different character $\\chi^{\\hat p, \\hat p'}_{\\hat r,\\hat s}$, and is thus recursive in nature. Bosonic-fermionic $q$-series identities for all characters $\\chi^{p, p'}_{r, s}$ result from equating these fermionic expressions with known bosonic expressions. In the cases for which $p=2r$, $p=3r$, $p'=2s$ or $p'=3s$, Rogers-Ramanujan type identities result from equating these fermionic expressions with known product expressions for $\\chi^{p, p'}_{r, s}$. The fermionic expressions are proved by first obta...

  4. Characterization of differentially expressed genes using high-dimensional co-expression networks

    DEFF Research Database (Denmark)

    Coelho Goncalves de Abreu, Gabriel; Labouriau, Rodrigo S.

    2010-01-01

    We present a technique to characterize differentially expressed genes in terms of their position in a high-dimensional co-expression network. The set-up of Gaussian graphical models is used to construct representations of the co-expression network in such a way that redundancy and the propagation...... that allow to make effective inference in problems with high degree of complexity (e.g. several thousands of genes) and small number of observations (e.g. 10-100) as typically occurs in high throughput gene expression studies. Taking advantage of the internal structure of decomposable graphical models, we...... construct a compact representation of the co-expression network that allows to identify the regions with high concentration of differentially expressed genes. It is argued that differentially expressed genes located in highly interconnected regions of the co-expression network are less informative than...

  5. Polycistronic gene expression in Aspergillus niger.

    Science.gov (United States)

    Schuetze, Tabea; Meyer, Vera

    2017-09-25

    Genome mining approaches predict dozens of biosynthetic gene clusters in each of the filamentous fungal genomes sequenced so far. However, the majority of these gene clusters still remain cryptic because they are not expressed in their natural host. Simultaneous expression of all genes belonging to a biosynthetic pathway in a heterologous host is one approach to activate biosynthetic gene clusters and to screen the metabolites produced for bioactivities. Polycistronic expression of all pathway genes under control of a single and tunable promoter would be the method of choice, as this does not only simplify cloning procedures, but also offers control on timing and strength of expression. However, polycistronic gene expression is a feature not commonly found in eukaryotic host systems, such as Aspergillus niger. In this study, we tested the suitability of the viral P2A peptide for co-expression of three genes in A. niger. Two genes descend from Fusarium oxysporum and are essential to produce the secondary metabolite enniatin (esyn1, ekivR). The third gene (luc) encodes the reporter luciferase which was included to study position effects. Expression of the polycistronic gene cassette was put under control of the Tet-On system to ensure tunable gene expression in A. niger. In total, three polycistronic expression cassettes which differed in the position of luc were constructed and targeted to the pyrG locus in A. niger. This allowed direct comparison of the luciferase activity based on the position of the luciferase gene. Doxycycline-mediated induction of the Tet-On expression cassettes resulted in the production of one long polycistronic mRNA as proven by Northern analyses, and ensured comparable production of enniatin in all three strains. Notably, gene position within the polycistronic expression cassette matters, as, luciferase activity was lowest at position one and had a comparable activity at positions two and three. The P2A peptide can be used to express at

  6. HTEL: a HyperText Expression Language

    DEFF Research Database (Denmark)

    Steensgaard-Madsen, Jørgen

    1999-01-01

    a discussion about the structure of hypertext expression languages. The operations have been chosen in agreement with what is strongly suggested, but not defined, by the HTML-standard. The HTEL-interpreter can be used for cgi-programs, i.e. to describe reactions when data from a `form' in an HTML-document has...... been submitted.A special tool has been used to build the HTEL-interpreter, as an example belonging a family of interpreters for domain specific languages. Members of that family have characteristics that are closely related to structural patterns found in the mark-ups of HTML. HTEL should also be seen......In general, an expression language provides a means to indicate non-constant values in expressions. It includes operations to combine values, but these will normally disappear when the expression is evaluated.HTEL is an expression language to produce HTML-documents. It is presented to stimulate...

  7. HTEL: a HyperText Expression Language

    DEFF Research Database (Denmark)

    Steensgaard-Madsen, Jørgen

    1999-01-01

    In general, an expression language provides a means to indicate non-constant values in expressions. It includes operations to combine values, but these will normally disappear when the expression is evaluated.HTEL is an expression language to produce HTML-documents. It is presented to stimulate...... a discussion about the structure of hypertext expression languages. The operations have been chosen in agreement with what is strongly suggested, but not defined, by the HTML-standard. The HTEL-interpreter can be used for cgi-programs, i.e. to describe reactions when data from a `form' in an HTML-document has...... been submitted.A special tool has been used to build the HTEL-interpreter, as an example belonging a family of interpreters for domain specific languages. Members of that family have characteristics that are closely related to structural patterns found in the mark-ups of HTML. HTEL should also be seen...

  8. Willingness to express emotions to caregiving spouses.

    Science.gov (United States)

    Monin, Joan K; Martire, Lynn M; Schulz, Richard; Clark, Margaret S

    2009-02-01

    This study examined the association between care-recipients' willingness to express emotions to spousal caregivers and caregiver's well-being and support behaviors. Using self-report measures in the context of a larger study, 262 care-recipients with osteoarthritis reported on their willingness to express emotions to caregivers, and caregivers reported on their stress and insensitive responding to care-recipients. Results revealed that care-recipients' willingness to express happiness was associated with less insensitive caregiver responding, and willingness to express interpersonal emotions (e.g., compassion, guilt) was associated with less caregiving stress. There were also gender differences, such that caregiving wives, in particular, benefited from their husband's willingness to express vulnerable (e.g., anxiety, sadness) and interpersonal emotions. (c) 2009 APA, all rights reserved

  9. Expression of Sox genes in tooth development.

    Science.gov (United States)

    Kawasaki, Katsushige; Kawasaki, Maiko; Watanabe, Momoko; Idrus, Erik; Nagai, Takahiro; Oommen, Shelly; Maeda, Takeyasu; Hagiwara, Nobuko; Que, Jianwen; Sharpe, Paul T; Ohazama, Atsushi

    2015-01-01

    Members of the Sox gene family play roles in many biological processes including organogenesis. We carried out comparative in situ hybridization analysis of seventeen sox genes (Sox1-14, 17, 18, 21) during murine odontogenesis from the epithelial thickening to the cytodifferentiation stages. Localized expression of five Sox genes (Sox6, 9, 13, 14 and 21) was observed in tooth bud epithelium. Sox13 showed restricted expression in the primary enamel knots. At the early bell stage, three Sox genes (Sox8, 11, 17 and 21) were expressed in pre-ameloblasts, whereas two others (Sox5 and 18) showed expression in odontoblasts. Sox genes thus showed a dynamic spatio-temporal expression during tooth development.

  10. Emotion Expression of Robot with Personality

    Directory of Open Access Journals (Sweden)

    Xue Hu

    2013-01-01

    Full Text Available A robot emotional expression model based on Hidden Markov Model (HMM is built to enable robots which have different personalities to response in a more satisfactory emotional level. Gross emotion regulation theory and Five Factors Model (FFM which are the theoretical basis are firstly described. And then the importance of the personality effect on the emotion expression process is proposed, and how to make the effect quantization is discussed. After that, the algorithm of HMM is used to describe the process of emotional state transition and expression, and the performance transferring probability affected by personality is calculated. At last, the algorithm model is simulated and applied in a robot platform. The results prove that the emotional expression model can acquire humanlike expressions and improve the human-computer interaction.

  11. Determinants of human adipose tissue gene expression

    DEFF Research Database (Denmark)

    Viguerie, Nathalie; Montastier, Emilie; Maoret, Jean-José

    2012-01-01

    of environmental and individual factors controlling AT adaptation is therefore essential. Here, expression of 271 transcripts, selected for regulation according to obesity and weight changes, was determined in 515 individuals before, after 8-week low-calorie diet-induced weight loss, and after 26-week ad libitum...... interconnection between expression of genes involved in de novo lipogenesis and components of the metabolic syndrome. Sex had a marked influence on AT expression of 88 transcripts, which persisted during the entire dietary intervention and after control for fat mass. In women, the influence of body mass index...... on expression of a subset of genes persisted during the dietary intervention. Twenty-two genes revealed a metabolic syndrome signature common to men and women. Genetic control of AT gene expression by cis signals was observed for 46 genes. Dietary intervention, sex, and cis genetic variants independently...

  12. Personality expression in Chinese language use.

    Science.gov (United States)

    Qiu, Lin; Lu, Jiahui; Ramsay, Jonathan; Yang, Shanshan; Qu, Weina; Zhu, Tingshao

    2017-12-01

    To date, little research has investigated personality expressions in languages other than English. Given that the Chinese language has the largest number of native speakers in the world, it is vitally important to examine the associations between personality and Chinese language use. In this research, we analysed Chinese microblogs and identified word categories and factorial structures associated with personality traits. We also compared our results with previous findings in English and showed that linguistic expression of personality has both universal- and language-specific aspects. Expression of personality via content words is more likely to be consistent across languages than expression via function words. This makes an important step towards uncovering universal patterns of personality expression in language. © 2016 International Union of Psychological Science.

  13. Physiological and cognitive effects of expressive dissonance.

    Science.gov (United States)

    Robinson, Jennifer L; Demaree, Heath A

    2007-02-01

    Emotional well-being depends in part on affect modulation. The present study extends research on emotion regulation by assessing the physiological and cognitive effects of a novel response-focused regulation strategy, termed 'expressive dissonance.' Expressive dissonance refers to the incongruence between an emotional state (e.g., sadness) and a behavioral expression (e.g., a smile). Fifty-five participants watched a series of sad film clips in which they were asked to either naturally watch or express the opposite of what they were feeling. Results suggest that persons using the expressive dissonant strategies evidenced greater sympathetic arousal and performed worse on subsequent memory tasks than persons in the natural-watch conditions.

  14. Detection of aggressive periodontitis by calprotectin expression

    Directory of Open Access Journals (Sweden)

    Desi Sandra Sari

    2009-12-01

    Full Text Available Background: Calprotectin is a calcium-binding protein expressed by neutrophil, monocytes, gingival keratinocytes, and oral epithelial cells. The concentrations of calprotectin increase in plasma, urine and synovial fluid of patients with inflammatory diseases. This protein is known as a marker for periodontal diseases and is detected in gingival crevicular fluids. Purpose: This study was aimed to investigate the detection of inflammation on the aggressive periodontitis by calprotectin expression. Method: The gingival crevicular fluids were taken from five aggressive periodontitis patients and five healthy subjects by using sterile paper points. Calprotectin expression was analyzed by ELISA technique. Result: The results showed the significant difference in calprotectin expression between subject with aggressive periodontitis and healthy subjects p = 0.002 (p < 0.05. Conclusion: It was concluded that the calprotectin expression on the aggressive periodontitis patients may be useful for evaluation the progression of inflammation in periodontitis.

  15. Voice Quality Modelling for Expressive Speech Synthesis

    Directory of Open Access Journals (Sweden)

    Carlos Monzo

    2014-01-01

    Full Text Available This paper presents the perceptual experiments that were carried out in order to validate the methodology of transforming expressive speech styles using voice quality (VoQ parameters modelling, along with the well-known prosody (F0, duration, and energy, from a neutral style into a number of expressive ones. The main goal was to validate the usefulness of VoQ in the enhancement of expressive synthetic speech in terms of speech quality and style identification. A harmonic plus noise model (HNM was used to modify VoQ and prosodic parameters that were extracted from an expressive speech corpus. Perception test results indicated the improvement of obtained expressive speech styles using VoQ modelling along with prosodic characteristics.

  16. PRAME gene expression profile in medulloblastoma

    Directory of Open Access Journals (Sweden)

    Tânia Maria Vulcani-Freitas

    2011-02-01

    Full Text Available Medulloblastoma is the most common malignant tumors of central nervous system in the childhood. The treatment is severe, harmful and, thus, has a dismal prognosis. As PRAME is present in various cancers, including meduloblastoma, and has limited expression in normal tissues, this antigen can be an ideal vaccine target for tumor immunotherapy. In order to find a potential molecular target, we investigated PRAME expression in medulloblastoma fragments and we compare the results with the clinical features of each patient. Analysis of gene expression was performed by real-time quantitative PCR from 37 tumor samples. The Mann-Whitney test was used to analysis the relationship between gene expression and clinical characteristics. Kaplan-Meier curves were used to evaluate survival. PRAME was overexpressed in 84% samples. But no statistical association was found between clinical features and PRAME overexpression. Despite that PRAME gene could be a strong candidate for immunotherapy since it is highly expressed in medulloblastomas.

  17. Expression transmission using exaggerated animation for Elfoid.

    Science.gov (United States)

    Hori, Maiya; Tsuruda, Yu; Yoshimura, Hiroki; Iwai, Yoshio

    2015-01-01

    We propose an expression transmission system using a cellular-phone-type teleoperated robot called Elfoid. Elfoid has a soft exterior that provides the look and feel of human skin, and is designed to transmit the speaker's presence to their communication partner using a camera and microphone. To transmit the speaker's presence, Elfoid sends not only the voice of the speaker but also the facial expression captured by the camera. In this research, facial expressions are recognized using a machine learning technique. Elfoid cannot, however, display facial expressions because of its compactness and a lack of sufficiently small actuator motors. To overcome this problem, facial expressions are displayed using Elfoid's head-mounted mobile projector. In an experiment, we built a prototype system and experimentally evaluated it's subjective usability.

  18. Insert sequence length determines transfection efficiency and gene expression levels in bicistronic mammalian expression vectors

    OpenAIRE

    Payne, Andrew J; Gerdes, Bryan C; Kaja, Simon; Koulen, Peter

    2013-01-01

    Bicistronic expression vectors have been widely used for co-expression studies since the initial discovery of the internal ribosome entry site (IRES) about 25 years ago. IRES sequences allow the 5’ cap-independent initiation of translation of multiple genes on a single messenger RNA strand. Using a commercially available mammalian expression vector containing an IRES sequence with a 3’ green fluorescent protein fluorescent marker, we found that sequence length of the gene of interest expresse...

  19. The MPI facial expression database--a validated database of emotional and conversational facial expressions.

    Directory of Open Access Journals (Sweden)

    Kathrin Kaulard

    Full Text Available The ability to communicate is one of the core aspects of human life. For this, we use not only verbal but also nonverbal signals of remarkable complexity. Among the latter, facial expressions belong to the most important information channels. Despite the large variety of facial expressions we use in daily life, research on facial expressions has so far mostly focused on the emotional aspect. Consequently, most databases of facial expressions available to the research community also include only emotional expressions, neglecting the largely unexplored aspect of conversational expressions. To fill this gap, we present the MPI facial expression database, which contains a large variety of natural emotional and conversational expressions. The database contains 55 different facial expressions performed by 19 German participants. Expressions were elicited with the help of a method-acting protocol, which guarantees both well-defined and natural facial expressions. The method-acting protocol was based on every-day scenarios, which are used to define the necessary context information for each expression. All facial expressions are available in three repetitions, in two intensities, as well as from three different camera angles. A detailed frame annotation is provided, from which a dynamic and a static version of the database have been created. In addition to describing the database in detail, we also present the results of an experiment with two conditions that serve to validate the context scenarios as well as the naturalness and recognizability of the video sequences. Our results provide clear evidence that conversational expressions can be recognized surprisingly well from visual information alone. The MPI facial expression database will enable researchers from different research fields (including the perceptual and cognitive sciences, but also affective computing, as well as computer vision to investigate the processing of a wider range of natural

  20. Metallothionein isoform expression by breast cancer cells.

    Science.gov (United States)

    Barnes, N L; Ackland, M L; Cornish, E J

    2000-08-01

    Expression of metallothionein (MT) isoforms by a human breast cancer cell line, PMC42, which retains many characteristics of normal breast epithelial cells and expresses functional estrogen receptors, was examined because it has been proposed that human breast cancer cells which are estrogen receptor positive can be differentiated from those which are estrogen receptor negative, by failure to express MT-1E [J.A. Friedline, S.H. Garrett, S. Somji, J.H. Todd, D. A. Sens, Differential expression of the MT-1E gene in estrogen-receptor positive and -negative breast cancer cell lines, Am. J. Pathol. 152 (1998) 23-27]. Using RT-PCR, PMC42 cells were found to transcribe genes for the MT isoforms IE, IX and 2A but not 1A or 1H. In order to examine which of the expressed isoforms might protect against metal toxicity, the cells were challenged with high concentrations of zinc and copper. Using competitive RT-PCR, cells resistant to 500 microM zinc showed 7+/-2 fold (SD, n=3) increases in expression of MT-1X and 6+/-3 fold increases in expression of MT-2A compared to control cells in normal media. For cells resistant to 250 microM copper the corresponding increases were 37+/-13 and 60+/-20 fold, whilst for control cells treated with 250 microM copper for only 6 h, increases were 10+/-3 and 6+/-3 fold. There was only a low level of expression of MT-1E in untreated cells and but a >120 fold increase in copper- resistant cells. Thus estrogen receptor positive cells cannot, in general, be differentiated from estrogen receptor negative cells by failure to express MT-1E, as suggested by Friedline et al. (1998). Increased expression of MT-1E, as well as MT-1X and MT-2A, protects against metal toxicity in PMC42 breast cancer cells.

  1. Recognition, Expression, and Understanding Facial Expressions of Emotion in Adolescents with Nonverbal and General Learning Disabilities

    Science.gov (United States)

    Bloom, Elana; Heath, Nancy

    2010-01-01

    Children with nonverbal learning disabilities (NVLD) have been found to be worse at recognizing facial expressions than children with verbal learning disabilities (LD) and without LD. However, little research has been done with adolescents. In addition, expressing and understanding facial expressions is yet to be studied among adolescents with LD…

  2. ["Les Impatients": expression through art].

    Science.gov (United States)

    Lamontagne, Céline; Palardy, Lorraine

    2015-01-01

    The organization called "Les Impatients" was founded in 1992. Using a unique model, Les Impatients welcomes those with mental health issues who would like to express themselves through art. Les Impatients offers free creative workshops and encourages exchanges with the community through the sharing of its participants' creations. The name Les Impatients reinforces the idea that the organization does not consider those attending its workshops as patients, but rather creators who are eager to heal, develop their craft and find their place in society. The participants contribute to the collective objective of breaking down the stigma that surrounds mental illness.Les Impatients collaborates with various mental health organizations in Quebec, such as the Institut universitaire en santé mentale de Montréal (IUSMM) affiliated to the Université de Montréal, Douglas Mental Health University Institute (DMHUI), the Centre de santé et services sociaux Drummond (CSSS Drummond) and the Centre de santé et services sociaux Pierre-Boucher (CSSS Pierre-Boucher). Les Impatients offers more than 48 workshops in eight different locations to around 450 participants each week.Dissemination activities, remarkable events, original projects: Les Impatients stands out through its realizations. Examples are exhibitions, collections of love letters, comic books, CD, concerts, and reading nights. The organization's originality resides in the exploration of the links between the work of the participants and that of professional artists. An illustration of this interest is the annual Parle-moi d'amour auction-exhibition, which has been one of Les Impatients' major events since 1999.As part of its mission, Les Impatients conserves the works of art created by the participants during the workshops. Its collection includes more than 15,000 works of art from Les Impatients as well as pieces donated by collectors of unconventional art, commonly known as "art brut" or "outsider art". The

  3. The Communicative Function of Sad Facial Expressions

    Directory of Open Access Journals (Sweden)

    Lawrence Ian Reed

    2017-03-01

    Full Text Available What are the communicative functions of sad facial expressions? Research shows that people feel sadness in response to losses but it’s unclear whether sad expressions function to communicate losses to others and if so, what makes these signals credible. Here we use economic games to test the hypothesis that sad expressions lend credibility to claims of loss. Participants play the role of either a proposer or recipient in a game with a fictional backstory and real monetary payoffs. The proposers view a (fictional video of the recipient’s character displaying either a neutral or sad expression paired with a claim of loss. The proposer then decided how much money to give to the recipient. In three experiments, we test alternative theories by using situations in which the recipient’s losses were uncertain (Experiment 1, the recipient’s losses were certain (Experiment 2, or the recipient claims failed gains rather than losses (Experiment 3. Overall, we find that participants gave more money to recipients who displayed sad expressions compared to neutral expressions, but only under conditions of uncertain loss. This finding supports the hypothesis that sad expressions function to increase the credibility of claims of loss.

  4. Expression and Function of NUMB in Odontogenesis

    Directory of Open Access Journals (Sweden)

    Haitao Li

    2013-01-01

    Full Text Available NUMB is a multifunctional protein implicated to function in self-renewal and differentiation of progenitors in several tissues. To characterize the transcripts and to analyze the expression pattern of NUMB in odontogenesis, we isolated 2 full-length clones for NUMB from mouse dental pulp mRNA. One novel sequence contained 200 bp insertion in the phosphotyrosine binding domain (PTB. Confocal microscopy analysis showed strong NUMB expression in human dental pulp stem cells (hDPSC and preameloblasts. Western blot analysis indicated that NUMB isoforms were differentially expressed in various dental tissues. Immunohistochemical analysis showed that in postnatal mouse tooth germs, NUMB was differentially expressed in the preameloblasts, odontoblasts, cervical loop region, and in the dental pulp stem cells during development. Interestingly, overexpression of NUMB in HAT-7, a preameloblast cell line, had dramatic antagonizing effects on the protein expression level of activated Notch 1. Further analysis of the Notch signaling pathway showed that NUMB significantly downregulates sonic hedgehog (Shh expression in preameloblasts. Therefore, we propose that NUMB maintains ameloblast progenitor phenotype at the cervical loop by downregulating the activated Notch1 protein and thereby inhibiting the mRNA expression of Shh.

  5. Glucose transporters: expression, regulation and cancer

    Directory of Open Access Journals (Sweden)

    RODOLFO A. MEDINA

    2002-01-01

    Full Text Available Mammalian cells depend on glucose as a major substrate for energy production. Glucose is transported into the cell via facilitative glucose transporters (GLUT present in all cell types. Many GLUT isoforms have been described and their expression is cell-specific and subject to hormonal and environmental control. The kinetic properties and substrate specificities of the different isoforms are specifically suited to the energy requirements of the particular cell types. Due to the ubiquitousness of these transporters, their differential expression is involved in various disease states such as diabetes, ischemia and cancer. The majority of cancers and isolated cancer cell lines over-express the GLUT family members which are present in the respective tissue of origin under non-cancerous conditions. Moreover, due to the requirement of energy to feed uncontrolled proliferation, cancer cells often express GLUTs which under normal conditions would not be present in these tissues. This over-expression is predominantly associated with the likelihood of metastasis and hence poor patient prognosis. This article presents a review of the current literature on the regulation and expression of GLUT family members and has compiled clinical and research data on GLUT expression in human cancers and in isolated human cancer cell lines.

  6. The Communicative Function of Sad Facial Expressions.

    Science.gov (United States)

    Reed, Lawrence Ian; DeScioli, Peter

    2017-01-01

    What are the communicative functions of sad facial expressions? Research shows that people feel sadness in response to losses but it's unclear whether sad expressions function to communicate losses to others and if so, what makes these signals credible. Here we use economic games to test the hypothesis that sad expressions lend credibility to claims of loss. Participants play the role of either a proposer or recipient in a game with a fictional backstory and real monetary payoffs. The proposers view a (fictional) video of the recipient's character displaying either a neutral or sad expression paired with a claim of loss. The proposer then decided how much money to give to the recipient. In three experiments, we test alternative theories by using situations in which the recipient's losses were uncertain (Experiment 1), the recipient's losses were certain (Experiment 2), or the recipient claims failed gains rather than losses (Experiment 3). Overall, we find that participants gave more money to recipients who displayed sad expressions compared to neutral expressions, but only under conditions of uncertain loss. This finding supports the hypothesis that sad expressions function to increase the credibility of claims of loss.

  7. CNPase Expression in Olfactory Ensheathing Cells

    Directory of Open Access Journals (Sweden)

    Christine Radtke

    2011-01-01

    Full Text Available A large body of work supports the proposal that transplantation of olfactory ensheathing cells (OECs into nerve or spinal cord injuries can promote axonal regeneration and remyelination. Yet, some investigators have questioned whether the transplanted OECs associate with axons and form peripheral myelin, or if they recruit endogenous Schwann cells that form myelin. Olfactory bulbs from transgenic mice expressing the enhanced green fluorescent protein (eGFP under the control of the 2-3-cyclic nucleotide 3-phosphodiesterase (CNPase promoter were studied. CNPase is expressed in myelin-forming cells throughout their lineage. We examined CNPase expression in both in situ in the olfactory bulb and in vitro to determine if OECs express CNPase commensurate with their myelination potential. eGFP was observed in the outer nerve layer of the olfactory bulb. Dissociated OECs maintained in culture had both intense eGFP expression and CNPase immunostaining. Transplantation of OECs into transected peripheral nerve longitudinally associated with the regenerated axons. These data indicate that OECs in the outer nerve layer of the olfactory bulb of CNPase transgenic mice express CNPase. Thus, while OECs do not normally form myelin on olfactory nerve axons, their expression of CNPase is commensurate with their potential to form myelin when transplanted into injured peripheral nerve.

  8. Evolution of gene expression after gene amplification.

    Science.gov (United States)

    Garcia, Nelson; Zhang, Wei; Wu, Yongrui; Messing, Joachim

    2015-04-24

    We took a rather unique approach to investigate the conservation of gene expression of prolamin storage protein genes across two different subfamilies of the Poaceae. We took advantage of oat plants carrying single maize chromosomes in different cultivars, called oat-maize addition (OMA) lines, which permitted us to determine whether regulation of gene expression was conserved between the two species. We found that γ-zeins are expressed in OMA7.06, which carries maize chromosome 7 even in the absence of the trans-acting maize prolamin-box-binding factor (PBF), which regulates their expression. This is likely because oat PBF can substitute for the function of maize PBF as shown in our transient expression data, using a γ-zein promoter fused to green fluorescent protein (GFP). Despite this conservation, the younger, recently amplified prolamin genes in maize, absent in oat, are not expressed in the corresponding OMAs. However, maize can express the oldest prolamin gene, the wheat high-molecular weight glutenin Dx5 gene, even when maize Pbf is knocked down (through PbfRNAi), and/or another maize transcription factor, Opaque-2 (O2) is knocked out (in maize o2 mutant). Therefore, older genes are conserved in their regulation, whereas younger ones diverged during evolution and eventually acquired a new repertoire of suitable transcriptional activators. © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

  9. Expression of multidrug resistance proteins in retinoblastoma

    Directory of Open Access Journals (Sweden)

    Swati Shukla

    2017-11-01

    Full Text Available AIM: To elucidate the mechanism of multidrug resistance in retinoblastoma, and to acquire more insights into in vivo drug resistance. METHODS: Three anticancer drug resistant Y79 human RB cells were generated against vincristine, etoposide or carboplatin, which are used for conventional chemotherapy in RB. Primary cultures from enucleated eyes after chemotherapy (PCNC were also prepared. Their chemosensitivity to chemotherapeutic agents (vincristine, etoposide and carboplatin were measured using MTT assay. Western blot analysis was performed to evaluate the expression of p53, Bcl-2 and various multidrug resistant proteins in retinoblastoma cells. RESULTS: Following exposure to chemotherapeutic drugs, PCNC showed less sensitivity to drugs. No significant changes observed in the p53 expression, whereas Bcl-2 expression was found to be increased in the drug resistant cells as well as in PCNC. Increased expression of P-glycoprotein (P-gp was observed in drug resistant Y79 cells; however there was no significant change in the expression of P-gp found between primary cultures of primarily enucleated eyes and PCNC. Multidrug resistance protein 1 (Mrp-1 expression was found to be elevated in the drug resistant Y79 cells as well as in PCNC. No significant change in the expression of lung resistance associated protein (Lrp was observed in the drug resistant Y79 cells as well as in PCNC. CONCLUSION: Our results suggest that multidrug resistant proteins are intrinsically present in retinoblastoma which causes treatment failure in managing retinoblastoma with chemotherapy.

  10. Expression of multidrug resistance proteins in retinoblastoma.

    Science.gov (United States)

    Shukla, Swati; Srivastava, Arpna; Kumar, Sunil; Singh, Usha; Goswami, Sandeep; Chawla, Bhavna; Bajaj, Mandeep Singh; Kashyap, Seema; Kaur, Jasbir

    2017-01-01

    To elucidate the mechanism of multidrug resistance in retinoblastoma, and to acquire more insights into in vivo drug resistance. Three anticancer drug resistant Y79 human RB cells were generated against vincristine, etoposide or carboplatin, which are used for conventional chemotherapy in RB. Primary cultures from enucleated eyes after chemotherapy (PCNC) were also prepared. Their chemosensitivity to chemotherapeutic agents (vincristine, etoposide and carboplatin) were measured using MTT assay. Western blot analysis was performed to evaluate the expression of p53, Bcl-2 and various multidrug resistant proteins in retinoblastoma cells. Following exposure to chemotherapeutic drugs, PCNC showed less sensitivity to drugs. No significant changes observed in the p53 expression, whereas Bcl-2 expression was found to be increased in the drug resistant cells as well as in PCNC. Increased expression of P-glycoprotein (P-gp) was observed in drug resistant Y79 cells; however there was no significant change in the expression of P-gp found between primary cultures of primarily enucleated eyes and PCNC. Multidrug resistance protein 1 (Mrp-1) expression was found to be elevated in the drug resistant Y79 cells as well as in PCNC. No significant change in the expression of lung resistance associated protein (Lrp) was observed in the drug resistant Y79 cells as well as in PCNC. Our results suggest that multidrug resistant proteins are intrinsically present in retinoblastoma which causes treatment failure in managing retinoblastoma with chemotherapy.

  11. Characterization of recombinantly expressed matrilin VWA domains.

    Science.gov (United States)

    Becker, Ann-Kathrin A; Mikolajek, Halina; Werner, Jörn M; Paulsson, Mats; Wagener, Raimund

    2015-03-01

    VWA domains are the predominant independent folding units within matrilins and mediate protein-protein interactions. Mutations in the matrilin-3 VWA domain cause various skeletal diseases. The analysis of the pathological mechanisms is hampered by the lack of detailed structural information on matrilin VWA domains. Attempts to resolve their structures were hindered by low solubility and a tendency to aggregation. We therefore took a comprehensive approach to improve the recombinant expression of functional matrilin VWA domains to enable X-ray crystallography and nuclear magnetic resonance (NMR) studies. The focus was on expression in Escherichia coli, as this allows incorporation of isotope-labeled amino acids, and on finding conditions that enhance solubility. Indeed, circular dichroism (CD) and NMR measurements indicated a proper folding of the bacterially expressed domains and, interestingly, expression of zebrafish matrilin VWA domains and addition of N-ethylmaleimide yielded the most stable proteins. However, such proteins did still not crystallize and allowed only partial peak assignment in NMR. Moreover, bacterially expressed matrilin VWA domains differ in their solubility and functional properties from the same domains expressed in eukaryotic cells. Structural studies of matrilin VWA domains will depend on the use of eukaryotic expression systems. Copyright © 2014. Published by Elsevier Inc.

  12. Gene expression and gene therapy imaging

    International Nuclear Information System (INIS)

    Rome, Claire; Couillaud, Franck; Moonen, Chrit T.W.

    2007-01-01

    The fast growing field of molecular imaging has achieved major advances in imaging gene expression, an important element of gene therapy. Gene expression imaging is based on specific probes or contrast agents that allow either direct or indirect spatio-temporal evaluation of gene expression. Direct evaluation is possible with, for example, contrast agents that bind directly to a specific target (e.g., receptor). Indirect evaluation may be achieved by using specific substrate probes for a target enzyme. The use of marker genes, also called reporter genes, is an essential element of MI approaches for gene expression in gene therapy. The marker gene may not have a therapeutic role itself, but by coupling the marker gene to a therapeutic gene, expression of the marker gene reports on the expression of the therapeutic gene. Nuclear medicine and optical approaches are highly sensitive (detection of probes in the picomolar range), whereas MRI and ultrasound imaging are less sensitive and require amplification techniques and/or accumulation of contrast agents in enlarged contrast particles. Recently developed MI techniques are particularly relevant for gene therapy. Amongst these are the possibility to track gene therapy vectors such as stem cells, and the techniques that allow spatiotemporal control of gene expression by non-invasive heating (with MRI guided focused ultrasound) and the use of temperature sensitive promoters. (orig.)

  13. Photosynthetic gene expression in higher plants.

    Science.gov (United States)

    Berry, James O; Yerramsetty, Pradeep; Zielinski, Amy M; Mure, Christopher M

    2013-11-01

    Within the chloroplasts of higher plants and algae, photosynthesis converts light into biological energy, fueling the assimilation of atmospheric carbon dioxide into biologically useful molecules. Two major steps, photosynthetic electron transport and the Calvin-Benson cycle, require many gene products encoded from chloroplast as well as nuclear genomes. The expression of genes in both cellular compartments is highly dynamic and influenced by a diverse range of factors. Light is the primary environmental determinant of photosynthetic gene expression. Working through photoreceptors such as phytochrome, light regulates photosynthetic genes at transcriptional and posttranscriptional levels. Other processes that affect photosynthetic gene expression include photosynthetic activity, development, and biotic and abiotic stress. Anterograde (from nucleus to chloroplast) and retrograde (from chloroplast to nucleus) signaling insures the highly coordinated expression of the many photosynthetic genes between these different compartments. Anterograde signaling incorporates nuclear-encoded transcriptional and posttranscriptional regulators, such as sigma factors and RNA-binding proteins, respectively. Retrograde signaling utilizes photosynthetic processes such as photosynthetic electron transport and redox signaling to influence the expression of photosynthetic genes in the nucleus. The basic C3 photosynthetic pathway serves as the default form used by most of the plant species on earth. High temperature and water stress associated with arid environments have led to the development of specialized C4 and CAM photosynthesis, which evolved as modifications of the basic default expression program. The goal of this article is to explain and summarize the many gene expression and regulatory processes that work together to support photosynthetic function in plants.

  14. DBATE: database of alternative transcripts expression.

    Science.gov (United States)

    Bianchi, Valerio; Colantoni, Alessio; Calderone, Alberto; Ausiello, Gabriele; Ferrè, Fabrizio; Helmer-Citterich, Manuela

    2013-01-01

    The use of high-throughput RNA sequencing technology (RNA-seq) allows whole transcriptome analysis, providing an unbiased and unabridged view of alternative transcript expression. Coupling splicing variant-specific expression with its functional inference is still an open and difficult issue for which we created the DataBase of Alternative Transcripts Expression (DBATE), a web-based repository storing expression values and functional annotation of alternative splicing variants. We processed 13 large RNA-seq panels from human healthy tissues and in disease conditions, reporting expression levels and functional annotations gathered and integrated from different sources for each splicing variant, using a variant-specific annotation transfer pipeline. The possibility to perform complex queries by cross-referencing different functional annotations permits the retrieval of desired subsets of splicing variant expression values that can be visualized in several ways, from simple to more informative. DBATE is intended as a novel tool to help appreciate how, and possibly why, the transcriptome expression is shaped. DATABASE URL: http://bioinformatica.uniroma2.it/DBATE/.

  15. Family emotional expressiveness and family structure

    Directory of Open Access Journals (Sweden)

    Čotar-Konrad Sonja

    2016-01-01

    Full Text Available The present paper scrutinizes the relationship between family emotional expressiveness (i.e., the tendency to express dominant and/or submissive positive and negative emotions and components of family structure as proposed in Olson’s Circumplex model (i.e., cohesion and flexibility, family communication, and satisfaction in families with adolescents. The study was conducted on a sample of 514 Slovenian adolescents, who filled out two questionnaires: the Slovenian version of Family Emotional Expressiveness - FEQ and FACES IV. The results revealed that all four basic dimensions of family functioning were significantly associated with higher/more frequent expressions of positive submissive emotions, as well as with lower/less frequent expressions of negative dominant emotions. Moreover, expressions of negative submissive emotions explained a small, but significant amount of variance in three out of four family functioning variables (satisfaction, flexibility, and communication. The importance of particular aspects of emotional expressiveness for family cohesion, flexibility, communication, and satisfaction is discussed, and the relevance of present findings for family counselling is outlined.

  16. Adaptive Evolution of Gene Expression in Drosophila.

    Science.gov (United States)

    Nourmohammad, Armita; Rambeau, Joachim; Held, Torsten; Kovacova, Viera; Berg, Johannes; Lässig, Michael

    2017-08-08

    Gene expression levels are important quantitative traits that link genotypes to molecular functions and fitness. In Drosophila, population-genetic studies have revealed substantial adaptive evolution at the genomic level, but the evolutionary modes of gene expression remain controversial. Here, we present evidence that adaptation dominates the evolution of gene expression levels in flies. We show that 64% of the observed expression divergence across seven Drosophila species are adaptive changes driven by directional selection. Our results are derived from time-resolved data of gene expression divergence across a family of related species, using a probabilistic inference method for gene-specific selection. Adaptive gene expression is stronger in specific functional classes, including regulation, sensory perception, sexual behavior, and morphology. Moreover, we identify a large group of genes with sex-specific adaptation of expression, which predominantly occurs in males. Our analysis opens an avenue to map system-wide selection on molecular quantitative traits independently of their genetic basis. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

  17. Cyclin D1 expression in prostate carcinoma

    International Nuclear Information System (INIS)

    Pereira, R.A.; Ravinal, R.C.; Costa, R.S.; Lima, M.S.; Tucci, S.; Muglia, V.F.; Reis, R.B. Dos; Silva, G.E.B.

    2014-01-01

    The purpose of this study was to investigate the relationship between cyclin D1 expression and clinicopathological parameters in patients with prostate carcinoma. We assessed cyclin D1 expression by conventional immunohistochemistry in 85 patients who underwent radical prostatectomy for prostate carcinoma and 10 normal prostate tissue samples retrieved from autopsies. We measured nuclear immunostaining in the entire tumor area and based the results on the percentage of positive tumor cells. The preoperative prostate-specific antigen (PSA) level was 8.68±5.16 ng/mL (mean±SD). Cyclin D1 staining was positive (cyclin D1 expression in >5% of tumor cells) in 64 cases (75.4%) and negative (cyclin D1 expression in ≤5% of tumor cells) in 21 cases (including 15 cases with no immunostaining). Normal prostate tissues were negative for cyclin D1. Among patients with a high-grade Gleason score (≥7), 86% of patients demonstrated cyclin D1 immunostaining of >5% (P<0.05). In the crude analysis of cyclin D1 expression, the high-grade Gleason score group showed a mean expression of 39.6%, compared to 26.9% in the low-grade Gleason score group (P<0.05). Perineural invasion tended to be associated with cyclin D1 expression (P=0.07), whereas cyclin D1 expression was not associated with PSA levels or other parameters. Our results suggest that high cyclin D1 expression could be a potential marker for tumor aggressiveness

  18. C-myc expression in adrenocortical tumours.

    Science.gov (United States)

    Pennanen, Mirkka; Hagström, Jaana; Heiskanen, Ilkka; Sane, Timo; Mustonen, Harri; Arola, Johanna; Haglund, Caj

    2018-02-01

    Widespread use of high-resolution imaging techniques and thus increased prevalence of adrenal lesions has made diagnostics of adrenocortical tumours an increasingly important clinical issue. In non-metastatic tumours, diagnosis is based on histology. New or enhanced information for clinicopathological diagnosis, revealing the malignant potential of the tumour, could emerge by means of biomarkers. The connection of proto-oncogene c-myc to adrenocortical neoplasias is poorly known, although the Wnt/beta-catenin pathway, one of the signalling pathways leading to induction of c-myc expression, has been connected to development of adrenocortical neoplasias. We studied c-myc expression in adrenocortical tumours and investigated molecules associated with the signalling pathway of c-myc, including cell cycle-related proteins p27, cyclin E and cyclin D1. We studied 195 consecutive adult patients with 197 primary adrenocortical tumours. Histopathological diagnosis was determined by Weiss score and the novel Helsinki score. C-myc, cyclin D1, cyclin E and p27 expressions were determined by immunohistochemistry. Benign adenomas showed prominent nuclear c-myc expression comparable to that of normal adrenocortical cells, whereas carcinomas showed increased cytoplasmic expression. Strong cytoplasmic and weak nuclear c-myc expressions associated with malignancy and adverse outcome. C-myc staining did not correlate with cyclin E. Cyclin D1 correlated with cytoplasmic c-myc expression and to a lesser extent with nuclear c-myc. P27 correlated with cytoplasmic c-myc, but not with nuclear c-myc. P27 correlated with cyclin E. Strong cytoplasmic c-myc expression and weak nuclear expression in adrenocortical tumours associated with malignancy and shorter survival. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

  19. Cyclin D1 expression in prostate carcinoma

    Energy Technology Data Exchange (ETDEWEB)

    Pereira, R.A.; Ravinal, R.C.; Costa, R.S.; Lima, M.S. [Universidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, Departamento de Patologia, Ribeirão Preto, SP, Brasil, Departamento de Patologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP (Brazil); Tucci, S. [Universidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, Departamento de Cirurgia e Anatomia, Divisão de Urologia, Ribeirão Preto, SP, Brasil, Divisão de Urologia, Departamento de Cirurgia e Anatomia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP (Brazil); Muglia, V.F. [Universidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, Departamento de Medicina Interna (Centro de Ciência da Imagem), Ribeirão Preto, SP, Brasil, Departamento de Medicina Interna (Centro de Ciência da Imagem), Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP (Brazil); Reis, R.B. Dos [Universidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, Departamento de Cirurgia e Anatomia, Divisão de Urologia, Ribeirão Preto, SP, Brasil, Divisão de Urologia, Departamento de Cirurgia e Anatomia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP (Brazil); Silva, G.E.B. [Universidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, Departamento de Patologia, Ribeirão Preto, SP, Brasil, Departamento de Patologia, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP (Brazil)

    2014-05-09

    The purpose of this study was to investigate the relationship between cyclin D1 expression and clinicopathological parameters in patients with prostate carcinoma. We assessed cyclin D1 expression by conventional immunohistochemistry in 85 patients who underwent radical prostatectomy for prostate carcinoma and 10 normal prostate tissue samples retrieved from autopsies. We measured nuclear immunostaining in the entire tumor area and based the results on the percentage of positive tumor cells. The preoperative prostate-specific antigen (PSA) level was 8.68±5.16 ng/mL (mean±SD). Cyclin D1 staining was positive (cyclin D1 expression in >5% of tumor cells) in 64 cases (75.4%) and negative (cyclin D1 expression in ≤5% of tumor cells) in 21 cases (including 15 cases with no immunostaining). Normal prostate tissues were negative for cyclin D1. Among patients with a high-grade Gleason score (≥7), 86% of patients demonstrated cyclin D1 immunostaining of >5% (P<0.05). In the crude analysis of cyclin D1 expression, the high-grade Gleason score group showed a mean expression of 39.6%, compared to 26.9% in the low-grade Gleason score group (P<0.05). Perineural invasion tended to be associated with cyclin D1 expression (P=0.07), whereas cyclin D1 expression was not associated with PSA levels or other parameters. Our results suggest that high cyclin D1 expression could be a potential marker for tumor aggressiveness.

  20. Effects of Expressive Writing on Psychological and Physical Health: The Moderating Role of Emotional Expressivity

    Science.gov (United States)

    Haltom, Kate E.; Mulvenna, Catherine M.; Lieberman, Matthew D.; Stanton, Annette L.

    2013-01-01

    The current study assessed main effects and moderators (including emotional expressiveness, emotional processing and ambivalence over emotional expression) of the effects of expressive writing in a sample of healthy adults. Young adult participants (N = 116) were randomly assigned to write for 20 minutes on four occasions about deepest thoughts and feelings regarding their most stressful/traumatic event in the past five years (expressive writing) or about a control topic (control). Dependent variables were indicators of anxiety, depression, and physical symptoms. No significant effects of writing condition were evident on anxiety, depressive symptoms, or physical symptoms. Emotional expressiveness emerged as a significant moderator of anxiety outcomes, however. Within the expressive writing group, participants high in expressiveness evidenced a significant reduction in anxiety at three-month follow-up, and participants low in expressiveness showed a significant increase in anxiety. Expressiveness did not predict change in anxiety in the control group. These findings on anxiety are consistent with the matching hypothesis, which suggests that matching a person’s naturally elected coping approach with an assigned intervention is beneficial. These findings also suggest that expressive writing about a stressful event may be contraindicated for individuals who do not typically express emotions. PMID:23742666

  1. New explicit expressions for Dirac bilinears

    Science.gov (United States)

    Lorcé, Cédric

    2018-01-01

    We derive new explicit expressions for the Dirac bilinears based on a generic representation of the massive Dirac spinors with canonical polarization. These bilinears depend on a direction n in Minkowski space which specifies the form of dynamics. We argue that such a dependence is unavoidable in a relativistic theory with spin, since it originates from Wigner rotation effects. Contrary to most of the expressions found in the literature, ours are valid for all momenta and canonical polarizations of the spinors. As a byproduct, we also obtain a generic explicit expression for the covariant spin vector.

  2. Expression of eukaryotic polypeptides in chloroplasts

    Energy Technology Data Exchange (ETDEWEB)

    Mayfield, Stephen P

    2013-06-04

    The present invention relates to a gene expression system in eukaryotic and prokaryotic cells, preferably plant cells and intact plants. In particular, the invention relates to an expression system having a RB47 binding site upstream of a translation initiation site for regulation of translation mediated by binding of RB47 protein, a member of the poly(A) binding protein family. Regulation is further effected by RB60, a protein disulfide isomerase. The expression system is capable of functioning in the nuclear/cytoplasm of cells and in the chloroplast of plants. Translation regulation of a desired molecule is enhanced approximately 100 fold over that obtained without RB47 binding site activation.

  3. EXPRESSION OF BACTERIOOPSIN GENES IN ESCHERICHIA COLI

    OpenAIRE

    TSUJIUCHI, Yutaka; IWASA, Tatsuo; TOKUNAGA, Fumio

    1994-01-01

    An inducible expression vector pUBO was constructed with native codons in order to express the gene of Bacteriorhodopsin (BOP) in Escherichia coli (E. coli). Vector pUBO contains lac-promoter followed by the partial structural gene of lacZ and the structural gene of BOP. The expression of this fusion protein was detected by ELISA with anti-BOP antiserum. The fusion protein obtained from E. coli trnsformed with pUBO formed approximately 0.1% of the total protein of the E. coli membrane fraction.

  4. Synthetic promoter libraries- tuning of gene expression

    DEFF Research Database (Denmark)

    Hammer, Karin; Mijakovic, Ivan; Jensen, Peter Ruhdal

    2006-01-01

    The study of gene function often requires changing the expression of a gene and evaluating the consequences. In principle, the expression of any given gene can be modulated in a quasi-continuum of discrete expression levels but the traditional approaches are usually limited to two extremes: gene...... be met by using promoter libraries. This approach generally consists of inserting a library of promoters in front of the gene to be studied, whereby the individual promoters might deviate either in their spacer sequences or bear slight deviations from the consensus sequence of a vegetative promoter. Here......, we describe the two different methods for obtaining promoter libraries and compare their applicability....

  5. Differential expression of cell adhesion genes

    DEFF Research Database (Denmark)

    Stein, Wilfred D; Litman, Thomas; Fojo, Tito

    2005-01-01

    that compare cells grown in suspension to similar cells grown attached to one another as aggregates have suggested that it is adhesion to the extracellular matrix of the basal membrane that confers resistance to apoptosis and, hence, resistance to cytotoxins. The genes whose expression correlates with poor...... survival might, therefore, act through such a matrix-to-cell suppression of apoptosis. Indeed, correlative mining of gene expression and patient survival databases suggests that poor survival in patients with metastatic cancer correlates highly with tumor expression of a common theme: the genes involved...

  6. Predicting the emotions expressed in music

    DEFF Research Database (Denmark)

    Madsen, Jens

    fundamental reason. (Mis)matching peoples mood with the emotions expressed in music was found to be an essential underlying mechanism, people use to regulate their emotions. This formed the basis and overall goal of the thesis, to investigate how to create a predictive model of emotions expressed in music....... To use in the next generation of music systems. The thesis was divided into three main topics involved in creating a predictive model 1) Elicitation of emotion, 2) Audio representation and 3) Modelling framework, associating the emotion and audio representation, allowing to predict the emotions expressed...... in the form of pairwise comparisons. One issue with pairwise comparisons is the scaling, this was solved using an active learning approach through a Gaussian Process model. Traditional audio representation disregards all temporal information in audio features used for modelling the emotions expressed in music...

  7. Drosophila melanogaster gene expression changes after spaceflight.

    Data.gov (United States)

    National Aeronautics and Space Administration — Gene expression levels were determined in 3rd instar and adult Drosophila melanogaster reared during spaceflight to elucidate the genetic and molecular mechanisms...

  8. Proteomic Analysis of Bacterial Expression Profiles Following ...

    African Journals Online (AJOL)

    mass spectrometry (GC-MS) were performed to determine the phytochemicals in the active fraction. Results: Five differentially expressed bacterial proteins (four from Escherichia coli and one from Staphylococcus aureus), were identified via ...

  9. Caleydo: connecting pathways and gene expression.

    Science.gov (United States)

    Streit, Marc; Lex, Alexander; Kalkusch, Michael; Zatloukal, Kurt; Schmalstieg, Dieter

    2009-10-15

    Understanding the relationships between pathways and the altered expression of their components in disease conditions can be addressed in a visual data analysis process. Caleydo uses novel visualization techniques to support life science experts in their analysis of gene expression data in the context of pathways and functions of individual genes. Pathways and gene expression visualizations are placed in a 3D scene where selected entities (i.e. genes) are visually connected. This allows Caleydo to seamlessly integrate interactive gene expression visualization with cross-database pathway exploration. The Caleydo visualization framework is freely available on www.caleydo.org for non-commercial use. It runs on Windows and Linux and requires a 3D capable graphics card.

  10. Regulation of gene expression in human tendinopathy

    Directory of Open Access Journals (Sweden)

    Archambault Joanne M

    2011-05-01

    Full Text Available Abstract Background Chronic tendon injuries, also known as tendinopathies, are common among professional and recreational athletes. These injuries result in a significant amount of morbidity and health care expenditure, yet little is known about the molecular mechanisms leading to tendinopathy. Methods We have used histological evaluation and molecular profiling to determine gene expression changes in 23 human patients undergoing surgical procedures for the treatment of chronic tendinopathy. Results Diseased tendons exhibit altered extracellular matrix, fiber disorientation, increased cellular content and vasculature, and the absence of inflammatory cells. Global gene expression profiling identified 983 transcripts with significantly different expression patterns in the diseased tendons. Global pathway analysis further suggested altered expression of extracellular matrix proteins and the lack of an appreciable inflammatory response. Conclusions Identification of the pathways and genes that are differentially regulated in tendinopathy samples will contribute to our understanding of the disease and the development of novel therapeutics.

  11. Expression of maize prolamins in Escherichia Coli

    International Nuclear Information System (INIS)

    Wang, Szu-zhen; Esen, Asim

    1985-01-01

    We have constructed a cDNA expression library of developing corn (Zea manys L.) endosperm using plasmid pUC8 as vector and Escherichia coli strain DH1 as host. The expression library was screened with non-radioactive immunological probes to detect the expression of gamma-zein and alpha-zein. When anti-gamma-zein antibody was used as the probe, 23 colonies gave positive reactions. The lengths of cDNA inserts of the 23 colonies were found to be 250-900 base pairs. When anti-alpha zein antibody was used, however, fewer colonies gave positive reactions. The library was also screened by colony-hybridization with 32 P-labeled DNA probes. Based on immunological and hybridization screening of the library and other evidence, we conclude that alpha-zein was either toxic to E. coli cells or rapidly degraded whereas gamma-zein and its fragments were readily expressed. (author)

  12. Heterologous expression and characterization of purified partial ...

    African Journals Online (AJOL)

    ech-42) isolated from Trichoderma harzianum. P Sharma, M Sharma, M Srivastava. Abstract. Chitinase gene from Trichoderma harzianum was cloned and hetrologously over expressed in M15 Escherichia coli. The recombinant protein of 42 ...

  13. SOX4 expression in bladder carcinoma

    DEFF Research Database (Denmark)

    Aaboe, Mads; Birkenkamp-Demtroder, Karin; Wiuf, Carsten

    2006-01-01

    The human transcription factor SOX4 was 5-fold up-regulated in bladder tumors compared with normal tissue based on whole-genome expression profiling of 166 clinical bladder tumor samples and 27 normal urothelium samples. Using a SOX4-specific antibody, we found that the cancer cells expressed...... in the clinical bladder material and a small subset of the genes showed a high correlation to SOX4 expression. The present data suggest a role of SOX4 in the bladder cancer disease....... the SOX4 protein and, thus, did an evaluation of SOX4 protein expression in 2,360 bladder tumors using a tissue microarray with clinical annotation. We found a correlation (P bladder cell line HU609, SOX4...

  14. Expression systems for cloned xenobiotic transporters

    International Nuclear Information System (INIS)

    Pritchard, John B.; Miller, David S.

    2005-01-01

    One challenge of modern biology is to be able to match genes and their encoded proteins with events at the molecular, cellular, tissue, and organism levels, and thus, provide a multi-level understanding of gene function and dysfunction. How well this can be done for xenobiotic transporters depends on a knowledge of the genes expressed in the tissue, the cellular locations of the gene products (do they function for uptake or efflux?), and our ability to match substrates with transporters using information obtained from cloned transporters functioning in heterologous expression systems. Clearly, making a rational choice of expression system to use for the characterization and study of cloned xenobiotic transporters is a critical part of study design. This choice requires well-defined goals, as well as an understanding of the strengths and weaknesses of candidate expression systems

  15. Manipulating galectin expression in zebrafish (Danio rerio)

    Digital Repository Service at National Institute of Oceanography (India)

    Feng, C.; Nita-Lazar, M.; Gonzalez-Montalban, N.; Wang, J.; Mancini, J.; Ravindran, C.; Ahmed, H.; Vasta, G.R.

    , autoimmunity and cancer, thus making them potential molecular targets for innovative drug discovery. Here, we provide a review of the current methods available for the manipulation of gene expression in the zebrafish, with a focus on gene knockdown [morpholino...

  16. Lunar Plants Prototype for Moon Express

    Data.gov (United States)

    National Aeronautics and Space Administration — The goal of our project is to bring the first full life cycle to the moon: to demonstrate germination of plants in lunar gravity and radiation.The Moon Express...

  17. An atlas of Caenorhabditis elegans chemoreceptor expression

    Science.gov (United States)

    Vidal, Berta; Aghayeva, Ulkar; Sun, Haosheng; Wang, Chen; Glenwinkel, Lori; Bayer, Emily A.

    2018-01-01

    One goal of modern day neuroscience is the establishment of molecular maps that assign unique features to individual neuron types. Such maps provide important starting points for neuron classification, for functional analysis, and for developmental studies aimed at defining the molecular mechanisms of neuron identity acquisition and neuron identity diversification. In this resource paper, we describe a nervous system-wide map of the potential expression sites of 244 members of the largest gene family in the C. elegans genome, rhodopsin-like (class A) G-protein-coupled receptor (GPCR) chemoreceptors, using classic gfp reporter gene technology. We cover representatives of all sequence families of chemoreceptor GPCRs, some of which were previously entirely uncharacterized. Most reporters are expressed in a very restricted number of cells, often just in single cells. We assign GPCR reporter expression to all but two of the 37 sensory neuron classes of the sex-shared, core nervous system. Some sensory neurons express a very small number of receptors, while others, particularly nociceptive neurons, coexpress several dozen GPCR reporter genes. GPCR reporters are also expressed in a wide range of inter- and motorneurons, as well as non-neuronal cells, suggesting that GPCRs may constitute receptors not just for environmental signals, but also for internal cues. We observe only one notable, frequent association of coexpression patterns, namely in one nociceptive amphid (ASH) and two nociceptive phasmid sensory neurons (PHA, PHB). We identified GPCRs with sexually dimorphic expression and several GPCR reporters that are expressed in a left/right asymmetric manner. We identified a substantial degree of GPCR expression plasticity; particularly in the context of the environmentally-induced dauer diapause stage when one third of all tested GPCRs alter the cellular specificity of their expression within and outside the nervous system. Intriguingly, in a number of cases, the dauer

  18. An atlas of Caenorhabditis elegans chemoreceptor expression.

    Directory of Open Access Journals (Sweden)

    Berta Vidal

    2018-01-01

    Full Text Available One goal of modern day neuroscience is the establishment of molecular maps that assign unique features to individual neuron types. Such maps provide important starting points for neuron classification, for functional analysis, and for developmental studies aimed at defining the molecular mechanisms of neuron identity acquisition and neuron identity diversification. In this resource paper, we describe a nervous system-wide map of the potential expression sites of 244 members of the largest gene family in the C. elegans genome, rhodopsin-like (class A G-protein-coupled receptor (GPCR chemoreceptors, using classic gfp reporter gene technology. We cover representatives of all sequence families of chemoreceptor GPCRs, some of which were previously entirely uncharacterized. Most reporters are expressed in a very restricted number of cells, often just in single cells. We assign GPCR reporter expression to all but two of the 37 sensory neuron classes of the sex-shared, core nervous system. Some sensory neurons express a very small number of receptors, while others, particularly nociceptive neurons, coexpress several dozen GPCR reporter genes. GPCR reporters are also expressed in a wide range of inter- and motorneurons, as well as non-neuronal cells, suggesting that GPCRs may constitute receptors not just for environmental signals, but also for internal cues. We observe only one notable, frequent association of coexpression patterns, namely in one nociceptive amphid (ASH and two nociceptive phasmid sensory neurons (PHA, PHB. We identified GPCRs with sexually dimorphic expression and several GPCR reporters that are expressed in a left/right asymmetric manner. We identified a substantial degree of GPCR expression plasticity; particularly in the context of the environmentally-induced dauer diapause stage when one third of all tested GPCRs alter the cellular specificity of their expression within and outside the nervous system. Intriguingly, in a number of

  19. Gauge choice in Witten's energy expression

    International Nuclear Information System (INIS)

    Parker, T.H.

    1985-01-01

    Witten's equation Dpsi=0 can be interpreted as a gauge fixing condition for classical supergravity. We rigorously prove the existence of asymptotically constant solutions of the more general gauge condition Dpsi=Apsi for almost all endomorphisms A of the spin bundle. Each gives an expression for the gravitational energy similar to Witten's. These include the choice A=√R, which yields the particularly elegant energy expression first noticed by Deser. (orig.)

  20. Sad Facial Expressions Increase Choice Blindness

    OpenAIRE

    Wang, Yajie; Zhao, Song; Zhang, Zhijie; Feng, Wenfeng

    2018-01-01

    Previous studies have discovered a fascinating phenomenon known as choice blindness—individuals fail to detect mismatches between the face they choose and the face replaced by the experimenter. Although previous studies have reported a couple of factors that can modulate the magnitude of choice blindness, the potential effect of facial expression on choice blindness has not yet been explored. Using faces with sad and neutral expressions (Experiment 1) and faces with happy and neutral expressi...

  1. Expressions of space deixis in travel telecasts

    OpenAIRE

    Vėbraitė, Žadvydė

    2016-01-01

    In this paper work there is presented space deixis, it's history and the usage specifically in travel shows. Space deixis is usually expressed in adverbs that indicates place, such as "here" and "there". Although in conversations of different people space deixis may mark indicating pronouns and other deictic morphemes. According to the German and English-American counterparts, Youtube video material will be analyzed with the aim to show how space deixis is expressed in travel shows.

  2. Japanese onomatopoeic expressions with quantitative meaning:

    OpenAIRE

    Kutafeva, Nataliia Vitalievna

    2015-01-01

    Grammatical category of quantity is absent in the Japanese language but there are many different grammatical, lexical, derivational and morphological modes of expression of quantity. This paper provides an analysis of the lexical mode of expression of quantitative meanings and their semantics with the help of onomatopoeic (giongo) and mimetic (gitaigo) words in the Japanese language. Based on the analysis, we have distinguished the following semantic groups: mimetic words A) existence of some...

  3. Analytical expressions for the electron backscattering coefficient

    International Nuclear Information System (INIS)

    August, H.J.; Wernisch, J.

    1989-01-01

    Several analytical expressions for the electron backscattering coefficient for massive homogeneous samples are compared with experimental data, directing special attention to the dependence of this quantity on the electron acceleration energy. It is shown that this dependence generally cannot be neglected. The expression proposed by Hunger and Kuechler turns out to be better than that of Love and Scott, although even the better formula can be slightly improved by a small modification. (author)

  4. TOX expression and role in CTCL

    Science.gov (United States)

    McGirt, LY; Degesys, CA; Johnson, VE; Zic, JA; Zwerner, JP; Eischen, CM

    2016-01-01

    Cutaneous T-cell lymphomas (CTCL) are skin malignancies including mycosis fungoides (MF) and CD30+ lymphoproliferative disorders (LPD). In early disease, CTCL can be difficult to diagnose, especially in MF for which there is no reliable diagnostic marker. MF/CTCL have increased expression of thymocyte selection-associated HMG box protein (TOX). Although TOX has been proposed to be a diagnostic marker for MF, further validation studies are needed. Moreover, it is unclear what drives TOX expression or its role in MF/CTCL. We hypothesize evaluation of TOX levels across a spectrum of CTCL, including MF precursor (large plaque parapsoriasis, LPP), will help elucidate the implications of altered TOX expression. TOX staining was performed in MF, CD30+ LPD, LPP as well as benign inflammatory dermatoses (BID) and normal skin (NS). Positive TOX expression was identified in 73.6% of MF cases and in 31.6% of BID/NS. TOX had a positive predictive value (PPV) for MF of 86.7% and a negative predictive value (NPV) of 48.1%. TOX expression in MF was detected more commonly in Black patients (p=0.015) and less commonly in transformed MF (p=0.045). LPP had positive TOX staining in 70.0%. In CTCL cells, GATA3 knockdown decreased TOX mRNA and protein expression. TOX expression also decreased in the presence of CTCL therapeutics. Our data indicate that TOX is useful as a diagnostic marker in MF. Moreover, TOX expression was evident in LPP, indicating it may have a previously unappreciated role in the development of MF. Finally, our data suggest that GATA3 regulates TOX, revealing insight into TOX regulation. PMID:27345620

  5. Colour Perception on Facial Expression towards Emotion

    OpenAIRE

    Rubita Sudirman; Ching Yee Yong; Kim Mey Chew

    2012-01-01

    This study is to investigate human perceptions on pairing of facial expressions of emotion with colours. A group of 27 subjects consisting mainly of younger and Malaysian had participated in this study. For each of the seven faces, which expresses the basic emotions neutral, happiness, surprise, anger, disgust, fear and sadness, a single colour is chosen from the eight basic colours for the “match” of best visual look to the face accordingly. The different emotions appear well characterized b...

  6. Nonlinear dimensionality reduction of gene expression data

    OpenAIRE

    Nilsson, Jens

    2006-01-01

    Using microarray measurements techniques, it is possible to measure the activity of genes simultaneously across the whole genome. Since genes influence each others activity levels through complex regulatory networks, such gene expression measurements are state samples of a dynamical system. Gene expression data has proven useful for diagnosis and definition of disease subgroups, for inference of the functional role of a given gene or for the deciphering of complex disease mechanisms. However,...

  7. Le tappe italiane del Trimble Express 2010

    Directory of Open Access Journals (Sweden)

    Sandra Leonardi

    2010-03-01

    Full Text Available Trimble Express stopped over Italy Trimble Express stopped in Italy, in 6 cities. The european road show has been set up to promote the latest news regarding Trimble technologies such as Trimble Access, the software that offers to survey teams a new approach in surveying; Trimble Access expedites data collection, processing, analysis, and delivery through improved workflows, collaboration and control.

  8. Le tappe italiane del Trimble Express 2010

    Directory of Open Access Journals (Sweden)

    Sandra Leonardi

    2010-03-01

    Full Text Available Trimble Express stopped over ItalyTrimble Express stopped in Italy, in 6 cities. The european road show has been set up to promote the latest news regarding Trimble technologies such as Trimble Access, the software that offers to survey teams a new approach in surveying; Trimble Access expedites data collection, processing, analysis, and delivery through improved workflows, collaboration and control.

  9. Oxygen tension affects lubricin expression in chondrocytes.

    Science.gov (United States)

    Hatta, Taku; Kishimoto, Koshi N; Okuno, Hiroshi; Itoi, Eiji

    2014-10-01

    We assessed the effects of oxygen tension on lubricin expression in bovine chondrocytes and cartilage explants and a role for hypoxia-inducible transcription factor (HIF)-1α in regulating lubricin expression was investigated using a murine chondroprogenitor cell line, ATDC5, and bovine chondrocytes isolated from superficial and middle/deep zones of femoral cartilage. ATDC5 cells and bovine chondrocytes were cultured in micromass under different oxygen tensions (21%, 5%, and 1%). ATDC5 cells and middle/deep zone chondrocytes that initially had low lubricin expression levels were also cultured with or without transforming growth factor (TGF)-β1. Quantitative reverse transcription (RT)-PCR was used to determine lubricin and chondrogenic marker gene mRNA levels and immunohistochemistry was used to assess lubricin protein expression. Explant cartilage plugs cultured under different oxygen tensions were also subjected to immunohistological analysis for lubricin. HIF-1α gene silencing was achieved by electroporatic transfer into ATDC5 cells. A low oxygen tension reduced lubricin gene expression levels in bovine superficial chondrocytes, TGF-β1-treated middle/deep zone chondrocytes, and TGF-β1-treated ATDC5 cells. Lubricin expression in explant cartilage was also suppressed under hypoxia. HIF-1α gene silencing in ATDC5 cells attenuated the lubricin expression response to the oxygen tension. These results corroborate with previous studies that the oxygen tension regulates lubricin gene expression and suggest that HIF-1α plays an important role in this regulation. The normal distribution of lubricin in articular cartilage may be due to the hypoxic oxygen environment of cartilage as it is an avascular tissue. An oxygen tension gradient may be a key factor for engineering cartilage tissue with a layered morphology.

  10. Expressive facial animation synthesis by learning speech coarticulation and expression spaces.

    Science.gov (United States)

    Deng, Zhigang; Neumann, Ulrich; Lewis, J P; Kim, Tae-Yong; Bulut, Murtaza; Narayanan, Shrikanth

    2006-01-01

    Synthesizing expressive facial animation is a very challenging topic within the graphics community. In this paper, we present an expressive facial animation synthesis system enabled by automated learning from facial motion capture data. Accurate 3D motions of the markers on the face of a human subject are captured while he/she recites a predesigned corpus, with specific spoken and visual expressions. We present a novel motion capture mining technique that "learns" speech coarticulation models for diphones and triphones from the recorded data. A Phoneme-Independent Expression Eigenspace (PIEES) that encloses the dynamic expression signals is constructed by motion signal processing (phoneme-based time-warping and subtraction) and Principal Component Analysis (PCA) reduction. New expressive facial animations are synthesized as follows: First, the learned coarticulation models are concatenated to synthesize neutral visual speech according to novel speech input, then a texture-synthesis-based approach is used to generate a novel dynamic expression signal from the PIEES model, and finally the synthesized expression signal is blended with the synthesized neutral visual speech to create the final expressive facial animation. Our experiments demonstrate that the system can effectively synthesize realistic expressive facial animation.

  11. Rho GTPase expression in human myeloid cells.

    Directory of Open Access Journals (Sweden)

    Suzanne F G van Helden

    Full Text Available Myeloid cells are critical for innate immunity and the initiation of adaptive immunity. Strict regulation of the adhesive and migratory behavior is essential for proper functioning of these cells. Rho GTPases are important regulators of adhesion and migration; however, it is unknown which Rho GTPases are expressed in different myeloid cells. Here, we use a qPCR-based approach to investigate Rho GTPase expression in myeloid cells.We found that the mRNAs encoding Cdc42, RhoQ, Rac1, Rac2, RhoA and RhoC are the most abundant. In addition, RhoG, RhoB, RhoF and RhoV are expressed at low levels or only in specific cell types. More differentiated cells along the monocyte-lineage display lower levels of Cdc42 and RhoV, while RhoC mRNA is more abundant. In addition, the Rho GTPase expression profile changes during dendritic cell maturation with Rac1 being upregulated and Rac2 downregulated. Finally, GM-CSF stimulation, during macrophage and osteoclast differentiation, leads to high expression of Rac2, while M-CSF induces high levels of RhoA, showing that these cytokines induce a distinct pattern. Our data uncover cell type specific modulation of the Rho GTPase expression profile in hematopoietic stem cells and in more differentiated cells of the myeloid lineage.

  12. Facial Expression Recognition Using SVM Classifier

    Directory of Open Access Journals (Sweden)

    Vasanth P.C.

    2015-03-01

    Full Text Available Facial feature tracking and facial actions recognition from image sequence attracted great attention in computer vision field. Computational facial expression analysis is a challenging research topic in computer vision. It is required by many applications such as human-computer interaction, computer graphic animation and automatic facial expression recognition. In recent years, plenty of computer vision techniques have been developed to track or recognize the facial activities in three levels. First, in the bottom level, facial feature tracking, which usually detects and tracks prominent landmarks surrounding facial components (i.e., mouth, eyebrow, etc, captures the detailed face shape information; Second, facial actions recognition, i.e., recognize facial action units (AUs defined in FACS, try to recognize some meaningful facial activities (i.e., lid tightener, eyebrow raiser, etc; In the top level, facial  expression analysis attempts to recognize some meaningful facial activities (i.e., lid tightener, eyebrow raiser, etc; In the top level, facial expression analysis attempts to recognize facial expressions that represent the human emotion states. In this proposed algorithm initially detecting eye and mouth, features of eye and mouth are extracted using Gabor filter, (Local Binary Pattern LBP and PCA is used to reduce the dimensions of the features. Finally SVM is used to classification of expression and facial action units.

  13. Coevolution of gene expression among interacting proteins

    Energy Technology Data Exchange (ETDEWEB)

    Fraser, Hunter B.; Hirsh, Aaron E.; Wall, Dennis P.; Eisen,Michael B.

    2004-03-01

    Physically interacting proteins or parts of proteins are expected to evolve in a coordinated manner that preserves proper interactions. Such coevolution at the amino acid-sequence level is well documented and has been used to predict interacting proteins, domains, and amino acids. Interacting proteins are also often precisely coexpressed with one another, presumably to maintain proper stoichiometry among interacting components. Here, we show that the expression levels of physically interacting proteins coevolve. We estimate average expression levels of genes from four closely related fungi of the genus Saccharomyces using the codon adaptation index and show that expression levels of interacting proteins exhibit coordinated changes in these different species. We find that this coevolution of expression is a more powerful predictor of physical interaction than is coevolution of amino acid sequence. These results demonstrate previously uncharacterized coevolution of gene expression, adding a different dimension to the study of the coevolution of interacting proteins and underscoring the importance of maintaining coexpression of interacting proteins over evolutionary time. Our results also suggest that expression coevolution can be used for computational prediction of protein protein interactions.

  14. Arabidopsis gene expression patterns during spaceflight

    Science.gov (United States)

    Paul, A.-L.; Ferl, R. J.

    The exposure of Arabidopsis thaliana (Arabidopsis) plants to spaceflight environments resulted in the differential expression of hundreds of genes. A 5 day mission on orbiter Columbia in 1999 (STS-93) carried transgenic Arabidopsis plants engineered with a transgene composed of the alcohol dehydrogenase (Adh) gene promoter linked to the β -Glucuronidase (GUS) reporter gene. The plants were used to evaluate the effects of spaceflight on two fronts. First, expression patterns visualized with the Adh/GUS transgene were used to address specifically the possibility that spaceflight induces a hypoxic stress response, and to assess whether any spaceflight response was similar to control terrestrial hypoxia-induced gene expression patterns. (Paul et al., Plant Physiol. 2001, 126:613). Second, genome-wide patterns of native gene expression were evaluated utilizing the Affymetrix ATH1 GeneChip? array of 8,000 Arabidopsis genes. As a control for the veracity of the array analyses, a selection of genes identified with the arrays was further characterized with quantitative Real-Time RT PCR (ABI - TaqmanTM). Comparison of the patterns of expression for arrays of hybridized with RNA isolated from plants exposed to spaceflight compared to the control arrays revealed hundreds of genes that were differentially expressed in response to spaceflight, yet most genes that are hallmarks of hypoxic stress were unaffected. These results will be discussed in light of current models for plant responses to the spaceflight environment, and with regard to potential future flight opportunities.

  15. Fluoxetin Upregulates Connexin 43 Expression in Astrocyte

    Directory of Open Access Journals (Sweden)

    Hossein Mostafavi

    2014-02-01

    Full Text Available Introduction: Recent studies have shown that astrocytes play major roles in normal and disease condition of the central nervous system including multiple sclerosis (MS. Molecular target therapy studies in MS have revealed that connexin-43 (Cx43 and Aquaporin-4 (AQP4 contents of astrocytes undergo expression alteration. Fluoxetine had some effects in MS patients unrelated to its known antidepressant effects. Some of fluoxetine effects were attributed to its capability of cAMP signaling pathway stimulation. This study aimed to investigate possible acute effects of fluoxetine on Cx43 and AQP4 expression in astrocyte.  Methods: Astrocytoma cells were treated for 24 hours with fluoxetine (10 and 20 &mug/ml with or without adenyl cyclase (AC and protein kinase A (PKA inhibition. Cx43 expression at both mRNA and protein levels and AQP4 expression at mRNA level were evaluated.  Results: Acquired results showed that fluoxetine with and without AC and PKA inhibition resulted in Cx43 up-regulation both in mRNA and protein levels, whereas AQP4 expression have not changed.  Discussion: In conclusion, data showed that fluoxetine alone and in the absence of serotonin acutely up-regulated Cx43 expression in astrocytes that can be assumed in molecular target therapy of MS patients. It seems that cAMP involvement in fluoxetine effects need more researches.

  16. Shadows alter facial expressions of Noh masks.

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    Nobuyuki Kawai

    Full Text Available BACKGROUND: A Noh mask, worn by expert actors during performance on the Japanese traditional Noh drama, conveys various emotional expressions despite its fixed physical properties. How does the mask change its expressions? Shadows change subtly during the actual Noh drama, which plays a key role in creating elusive artistic enchantment. We here describe evidence from two experiments regarding how attached shadows of the Noh masks influence the observers' recognition of the emotional expressions. METHODOLOGY/PRINCIPAL FINDINGS: In Experiment 1, neutral-faced Noh masks having the attached shadows of the happy/sad masks were recognized as bearing happy/sad expressions, respectively. This was true for all four types of masks each of which represented a character differing in sex and age, even though the original characteristics of the masks also greatly influenced the evaluation of emotions. Experiment 2 further revealed that frontal Noh mask images having shadows of upward/downward tilted masks were evaluated as sad/happy, respectively. This was consistent with outcomes from preceding studies using actually tilted Noh mask images. CONCLUSIONS/SIGNIFICANCE: Results from the two experiments concur that purely manipulating attached shadows of the different types of Noh masks significantly alters the emotion recognition. These findings go in line with the mysterious facial expressions observed in Western paintings, such as the elusive qualities of Mona Lisa's smile. They also agree with the aesthetic principle of Japanese traditional art "yugen (profound grace and subtlety", which highly appreciates subtle emotional expressions in the darkness.

  17. Cyclooxygenase-2 expression correlates with membrane-type-1 matrix metalloproteinase expression in colorectal cancer tissue.

    Science.gov (United States)

    Guo, Hongfei; Tatsuguchi, Atsushi; Shinji, Seiichi; Fujimori, Shunji; Tanaka, Shu; Gudis, Katya; Sugisaki, Yuichi; Furukawa, Kiyonori; Tajiri, Takashi; Fukuda, Yuh; Kishida, Teruyuki; Sakamoto, Choitsu

    2006-08-01

    Elevated expression of cyclooxygenase-2 has been found in colorectal cancer. One of the mechanisms through which cyclooxygenase-2 affects tumorigenesis is through its overexpression, which leads to increased invasiveness of cancer cells. A crucial step in this pathway is thought to be the induction of membrane-type-1 matrix metalloproteinase, which activates matrix metalloproteinase-2. However, to date there have been few clinicopathologic studies concerning cyclooxygenase-2-mediated invasiveness in human colorectal cancer tissues. We performed immunohistochemical analysis of the respective antigens on colorectal cancer specimens obtained by surgical resections from 96 patients with colorectal cancer. Cyclooxygenase-2 and membrane-type-1 matrix metalloproteinase expression was positive exclusively in cancer cells in 88 cases (92 percent) and 23 cases (24 percent), respectively. All 23 cases expressing membrane-type-1 matrix metalloproteinase also expressed cyclooxygenase-2. Matrix metalloproteinase-2 expression was positive in cancer cells in 20 cases (21 percent) and stromal cells in 52 cases (54 percent). Expression of matrix metalloproteinase-2 in cancer cells correlated with lymphatic invasion and local recurrence. Statistically, a significant correlation was found between cyclooxygenase-2 and membrane-type-1 matrix metalloproteinase expression, and membrane-type-1 matrix metalloproteinase and matrix metalloproteinase-2 expression in cancer cells. There was no association between cyclooxygenase-2 expression and matrix metalloproteinase-2 expression. However, immunostaining of serial sections revealed that in the majority of cases examined, nearly 100 percent of cancer cells expressing matrix metalloproteinase-2 also coexpressed cyclooxygenase-2. This study indicates strong association between both cyclooxygenase-2 and membrane-type-1 matrix metalloproteinase expression, and membrane-type-1 matrix metalloproteinase and matrix metalloproteinase-2 in colorectal

  18. Cloning, sequencing and expression of cDNA encoding growth ...

    Indian Academy of Sciences (India)

    Unknown

    cell embryo and the expression was monitored continuously. The expression shown here is in developing embryo and freshly hatched fish. The intensity of green colour indicate the strong expression of EGFP in all the tissues of the embryo/fry. The expression of EGPF indicates the co-expression of catfish GH cDNA and the ...

  19. In plants, expression breadth and expression level distinctly and non-linearly correlate with gene structure

    Directory of Open Access Journals (Sweden)

    Yang Hangxing

    2009-11-01

    Full Text Available Abstract Background Compactness of highly/broadly expressed genes in human has been explained as selection for efficiency, regional mutation biases or genomic design. However, highly expressed genes in flowering plants were shown to be less compact than lowly expressed ones. On the other hand, opposite facts have also been documented that pollen-expressed Arabidopsis genes tend to contain shorter introns and highly expressed moss genes are compact. This issue is important because it provides a chance to compare the selectionism and the neutralism views about genome evolution. Furthermore, this issue also helps to understand the fates of introns, from the angle of gene expression. Results In this study, I used expression data covering more tissues and employ new analytical methods to reexamine the correlations between gene expression and gene structure for two flowering plants, Arabidopsis thaliana and Oryza sativa. It is shown that, different aspects of expression pattern correlate with different parts of gene sequences in distinct ways. In detail, expression level is significantly negatively correlated with gene size, especially the size of non-coding regions, whereas expression breadth correlates with non-coding structural parameters positively and with coding region parameters negatively. Furthermore, the relationships between expression level and structural parameters seem to be non-linear, with the extremes of structural parameters possibly scale as power-laws or logrithmic functions of expression levels. Conclusion In plants, highly expressed genes are compact, especially in the non-coding regions. Broadly expressed genes tend to contain longer non-coding sequences, which may be necessary for complex regulations. In combination with previous studies about other plants and about animals, some common scenarios about the correlation between gene expression and gene structure begin to emerge. Based on the functional relationships between

  20. Enhanced gene expression from retroviral vectors

    Directory of Open Access Journals (Sweden)

    Micklem David R

    2008-02-01

    Full Text Available Abstract Background Retroviruses are widely used to transfer genes to mammalian cells efficiently and stably. However, genetic elements required for high-level gene expression are incompatible with standard systems. The retroviral RNA genome is produced by cellular transcription and post-transcriptional processing within packaging cells: Introns present in the retroviral genomic transcript are removed by splicing, while polyadenylation signals lead to the production of ineffective truncated genomes. Furthermore strong enhancer/promoters within the retroviral payload lead to detrimental competition with the retroviral enhancer/promoter. Results By exploiting a new method of producing the retroviral genome in vitro it is possible to produce infectious retroviral particles carrying a high-level expression cassette that completely prohibits production of infectious retroviral particles by conventional methods. We produced an expression cassette comprising a strong enhancer/promoter, an optimised intron, the GFP open reading frame and a strong polyadenylation signal. This cassette was cloned into both a conventional MMLV retroviral vector and a vector designed to allow in vitro transcription of the retroviral genome by T7 RNA polymerase. When the conventional retroviral vector was transfected into packaging cells, the expression cassette drove strong GFP expression, but no infectious retrovirus was produced. Introduction of the in vitro produced uncapped retroviral genomic transcript into the packaging cells did not lead to any detectable GFP expression. However, infectious retrovirus was easily recovered, and when used to infect target primary human cells led to very high GFP expression – up to 3.5 times greater than conventional retroviral LTR-driven expression. Conclusion Retroviral vectors carrying an optimized high-level expression cassette do not produce infectious virions when introduced into packaging cells by transfection of DNA

  1. Channel properties of Nax expressed in neurons.

    Directory of Open Access Journals (Sweden)

    Masahito Matsumoto

    Full Text Available Nax is a sodium-concentration ([Na+]-sensitive Na channel with a gating threshold of ~150 mM for extracellular [Na+] ([Na+]o in vitro. We previously reported that Nax was preferentially expressed in the glial cells of sensory circumventricular organs including the subfornical organ, and was involved in [Na+] sensing for the control of salt-intake behavior. Although Nax was also suggested to be expressed in the neurons of some brain regions including the amygdala and cerebral cortex, the channel properties of Nax have not yet been adequately characterized in neurons. We herein verified that Nax was expressed in neurons in the lateral amygdala of mice using an antibody that was newly generated against mouse Nax. To investigate the channel properties of Nax expressed in neurons, we established an inducible cell line of Nax using the mouse neuroblastoma cell line, Neuro-2a, which is endogenously devoid of the expression of Nax. Functional analyses of this cell line revealed that the [Na+]-sensitivity of Nax in neuronal cells was similar to that expressed in glial cells. The cation selectivity sequence of the Nax channel in cations was revealed to be Na+ ≈ Li+ > Rb+ > Cs+ for the first time. Furthermore, we demonstrated that Nax bound to postsynaptic density protein 95 (PSD95 through its PSD95/Disc-large/ZO-1 (PDZ-binding motif at the C-terminus in neurons. The interaction between Nax and PSD95 may be involved in promoting the surface expression of Nax channels because the depletion of endogenous PSD95 resulted in a decrease in Nax at the plasma membrane. These results indicated, for the first time, that Nax functions as a [Na+]-sensitive Na channel in neurons as well as in glial cells.

  2. Expression of Na,K-ATPase and H,K-ATPase Isoforms with the Baculovirus Expression System

    NARCIS (Netherlands)

    Koenderink, J.B.; Swarts, H.G.

    2016-01-01

    P-type ATPases can be expressed in several cell systems. The baculovirus expressions system uses an insect virus to enter and express proteins in Sf9 insect cells. This expression system is a lytic system in which the cells will die a few days after viral infection. Subsequently, the expressed

  3. Pitx2 expression promotes p21 expression and cell cycle exit in neural stem cells.

    Science.gov (United States)

    Heldring, Nina; Joseph, Bertrand; Hermanson, Ola; Kioussi, Chrissa

    2012-11-01

    Cortical development is a complex process that involves many events including proliferation, cell cycle exit and differentiation that need to be appropriately synchronized. Neural stem cells (NSCs) isolated from embryonic cortex are characterized by their ability of self-renewal under continued maintenance of multipotency. Cell cycle progression and arrest during development is regulated by numerous factors, including cyclins, cyclin dependent kinases and their inhibitors. In this study, we exogenously expressed the homeodomain transcription factor Pitx2, usually expressed in postmitotic progenitors and neurons of the embryonic cortex, in NSCs with low expression of endogenous Pitx2. We found that Pitx2 expression induced a rapid decrease in proliferation associated with an accumulation of NSCs in G1 phase. A search for potential cell cycle inhibitors responsible for such cell cycle exit of NSCs revealed that Pitx2 expression caused a rapid and dramatic (≉20-fold) increase in expression of the cell cycle inhibitor p21 (WAF1/Cip1). In addition, Pitx2 bound directly to the p21 promoter as assessed by chromatin immunoprecipitation (ChIP) in NSCs. Surprisingly, Pitx2 expression was not associated with an increase in differentiation markers, but instead the expression of nestin, associated with undifferentiated NSCs, was maintained. Our results suggest that Pitx2 promotes p21 expression and induces cell cycle exit in neural progenitors.

  4. Morphing between expressions dissociates continuous from categorical representations of facial expression in the human brain

    Science.gov (United States)

    Harris, Richard J.; Young, Andrew W.; Andrews, Timothy J.

    2012-01-01

    Whether the brain represents facial expressions as perceptual continua or as emotion categories remains controversial. Here, we measured the neural response to morphed images to directly address how facial expressions of emotion are represented in the brain. We found that face-selective regions in the posterior superior temporal sulcus and the amygdala responded selectively to changes in facial expression, independent of changes in identity. We then asked whether the responses in these regions reflected categorical or continuous neural representations of facial expression. Participants viewed images from continua generated by morphing between faces posing different expressions such that the expression could be the same, could involve a physical change but convey the same emotion, or could differ by the same physical amount but be perceived as two different emotions. We found that the posterior superior temporal sulcus was equally sensitive to all changes in facial expression, consistent with a continuous representation. In contrast, the amygdala was only sensitive to changes in expression that altered the perceived emotion, demonstrating a more categorical representation. These results offer a resolution to the controversy about how facial expression is processed in the brain by showing that both continuous and categorical representations underlie our ability to extract this important social cue. PMID:23213218

  5. LocExpress: a web server for efficiently estimating expression of novel transcripts.

    Science.gov (United States)

    Hou, Mei; Tian, Feng; Jiang, Shuai; Kong, Lei; Yang, Dechang; Gao, Ge

    2016-12-22

    The temporal and spatial-specific expression pattern of a transcript in multiple tissues and cell types can indicate key clues about its function. While several gene atlas available online as pre-computed databases for known gene models, it's still challenging to get expression profile for previously uncharacterized (i.e. novel) transcripts efficiently. Here we developed LocExpress, a web server for efficiently estimating expression of novel transcripts across multiple tissues and cell types in human (20 normal tissues/cells types and 14 cell lines) as well as in mouse (24 normal tissues/cell types and nine cell lines). As a wrapper to RNA-Seq quantification algorithm, LocExpress efficiently reduces the time cost by making abundance estimation calls increasingly within the minimum spanning bundle region of input transcripts. For a given novel gene model, such local context-oriented strategy allows LocExpress to estimate its FPKMs in hundreds of samples within minutes on a standard Linux box, making an online web server possible. To the best of our knowledge, LocExpress is the only web server to provide nearly real-time expression estimation for novel transcripts in common tissues and cell types. The server is publicly available at http://loc-express.cbi.pku.edu.cn .

  6. Three new shuttle vectors for heterologous expression in Zymomonas mobilis

    Directory of Open Access Journals (Sweden)

    Qinghua Cao

    2016-01-01

    Conclusions: These results indicated that these expression vectors are useful tools for gene expression in Z. mobilis and this could provide a solid foundation for further studies of heterologous gene expression in Z. mobilis.

  7. Gene expression analysis of flax seed development

    Directory of Open Access Journals (Sweden)

    Sharpe Andrew

    2011-04-01

    Full Text Available Abstract Background Flax, Linum usitatissimum L., is an important crop whose seed oil and stem fiber have multiple industrial applications. Flax seeds are also well-known for their nutritional attributes, viz., omega-3 fatty acids in the oil and lignans and mucilage from the seed coat. In spite of the importance of this crop, there are few molecular resources that can be utilized toward improving seed traits. Here, we describe flax embryo and seed development and generation of comprehensive genomic resources for the flax seed. Results We describe a large-scale generation and analysis of expressed sequences in various tissues. Collectively, the 13 libraries we have used provide a broad representation of genes active in developing embryos (globular, heart, torpedo, cotyledon and mature stages seed coats (globular and torpedo stages and endosperm (pooled globular to torpedo stages and genes expressed in flowers, etiolated seedlings, leaves, and stem tissue. A total of 261,272 expressed sequence tags (EST (GenBank accessions LIBEST_026995 to LIBEST_027011 were generated. These EST libraries included transcription factor genes that are typically expressed at low levels, indicating that the depth is adequate for in silico expression analysis. Assembly of the ESTs resulted in 30,640 unigenes and 82% of these could be identified on the basis of homology to known and hypothetical genes from other plants. When compared with fully sequenced plant genomes, the flax unigenes resembled poplar and castor bean more than grape, sorghum, rice or Arabidopsis. Nearly one-fifth of these (5,152 had no homologs in sequences reported for any organism, suggesting that this category represents genes that are likely unique to flax. Digital analyses revealed gene expression dynamics for the biosynthesis of a number of important seed constituents during seed development. Conclusions We have developed a foundational database of expressed sequences and collection of plasmid

  8. Gene expression analysis of flax seed development.

    Science.gov (United States)

    Venglat, Prakash; Xiang, Daoquan; Qiu, Shuqing; Stone, Sandra L; Tibiche, Chabane; Cram, Dustin; Alting-Mees, Michelle; Nowak, Jacek; Cloutier, Sylvie; Deyholos, Michael; Bekkaoui, Faouzi; Sharpe, Andrew; Wang, Edwin; Rowland, Gordon; Selvaraj, Gopalan; Datla, Raju

    2011-04-29

    Flax, Linum usitatissimum L., is an important crop whose seed oil and stem fiber have multiple industrial applications. Flax seeds are also well-known for their nutritional attributes, viz., omega-3 fatty acids in the oil and lignans and mucilage from the seed coat. In spite of the importance of this crop, there are few molecular resources that can be utilized toward improving seed traits. Here, we describe flax embryo and seed development and generation of comprehensive genomic resources for the flax seed. We describe a large-scale generation and analysis of expressed sequences in various tissues. Collectively, the 13 libraries we have used provide a broad representation of genes active in developing embryos (globular, heart, torpedo, cotyledon and mature stages) seed coats (globular and torpedo stages) and endosperm (pooled globular to torpedo stages) and genes expressed in flowers, etiolated seedlings, leaves, and stem tissue. A total of 261,272 expressed sequence tags (EST) (GenBank accessions LIBEST_026995 to LIBEST_027011) were generated. These EST libraries included transcription factor genes that are typically expressed at low levels, indicating that the depth is adequate for in silico expression analysis. Assembly of the ESTs resulted in 30,640 unigenes and 82% of these could be identified on the basis of homology to known and hypothetical genes from other plants. When compared with fully sequenced plant genomes, the flax unigenes resembled poplar and castor bean more than grape, sorghum, rice or Arabidopsis. Nearly one-fifth of these (5,152) had no homologs in sequences reported for any organism, suggesting that this category represents genes that are likely unique to flax. Digital analyses revealed gene expression dynamics for the biosynthesis of a number of important seed constituents during seed development. We have developed a foundational database of expressed sequences and collection of plasmid clones that comprise even low-expressed genes such as

  9. The perception of emotion in body expressions.

    Science.gov (United States)

    de Gelder, B; de Borst, A W; Watson, R

    2015-01-01

    During communication, we perceive and express emotional information through many different channels, including facial expressions, prosody, body motion, and posture. Although historically the human body has been perceived primarily as a tool for actions, there is now increased understanding that the body is also an important medium for emotional expression. Indeed, research on emotional body language is rapidly emerging as a new field in cognitive and affective neuroscience. This article reviews how whole-body signals are processed and understood, at the behavioral and neural levels, with specific reference to their role in emotional communication. The first part of this review outlines brain regions and spectrotemporal dynamics underlying perception of isolated neutral and affective bodies, the second part details the contextual effects on body emotion recognition, and final part discusses body processing on a subconscious level. More specifically, research has shown that body expressions as compared with neutral bodies draw upon a larger network of regions responsible for action observation and preparation, emotion processing, body processing, and integrative processes. Results from neurotypical populations and masking paradigms suggest that subconscious processing of affective bodies relies on a specific subset of these regions. Moreover, recent evidence has shown that emotional information from the face, voice, and body all interact, with body motion and posture often highlighting and intensifying the emotion expressed in the face and voice. © 2014 John Wiley & Sons, Ltd.

  10. A promoter-level mammalian expression atlas

    KAUST Repository

    Forest, Alistair R R

    2014-03-26

    Regulated transcription controls the diversity, developmental pathways and spatial organization of the hundreds of cell types that make up a mammal. Using single-molecule cDNA sequencing, we mapped transcription start sites (TSSs) and their usage in human and mouse primary cells, cell lines and tissues to produce a comprehensive overview of mammalian gene expression across the human body. We find that few genes are truly ‘housekeeping’, whereas many mammalian promoters are composite entities composed of several closely separated TSSs, with independent cell-type-specific expression profiles. TSSs specific to different cell types evolve at different rates, whereas promoters of broadly expressed genes are the most conserved. Promoter-based expression analysis reveals key transcription factors defining cell states and links them to binding-site motifs. The functions of identified novel transcripts can be predicted by coexpression and sample ontology enrichment analyses. The functional annotation of the mammalian genome 5 (FANTOM5) project provides comprehensive expression profiles and functional annotation of mammalian cell-type-specific transcriptomes with wide applications in biomedical research.

  11. Pragmatic expressions in cross-linguistic perspective

    Directory of Open Access Journals (Sweden)

    Maryann Overstreet

    2012-09-01

    Full Text Available This paper focuses on some pragmatic expressions that are characteristic of informal spoken English, their possible equivalents in some other languages, and their use by EFL learners from different backgrounds. These expressions, called general extenders (e.g. and stuff, or something, are shown to be different from discourse markers and to exhibit variation in form, function and distribution across varieties of English, as well as in other languages. In EFL contexts, students are reported to use fewer pragmatic expressions and a smaller range of possible forms. They also tend to favor expressions more often associated with writing and formal speaking (e.g. and so on, include literal translation equivalents from their first language that are not used in English (e.g. and, and, and, or used only in restricted contexts (e.g. or so, and often seem not to realize that some forms may carry negative connotations (e.g. and blah, blah, blah. The possibility of fostering better pragmatic awareness among EFL students is discussed in terms of an explicit cross-linguistic focus on the forms and functions of pragmatic expressions.

  12. IL-21 Receptor Expression in Human Tendinopathy

    Science.gov (United States)

    Campbell, Abigail L.; Smith, Nicola C.; Reilly, James H.; Kerr, Shauna C.; Leach, William J.; Fazzi, Umberto G.; Rooney, Brian P.; Murrell, George A. C.; Millar, Neal L.

    2014-01-01

    The pathogenetic mechanisms underlying tendinopathy remain unclear, with much debate as to whether inflammation or degradation has the prominent role. Increasing evidence points toward an early inflammatory infiltrate and associated inflammatory cytokine production in human and animal models of tendon disease. The IL-21/IL-21R axis is a proinflammatory cytokine complex that has been associated with chronic inflammatory diseases including rheumatoid arthritis and inflammatory bowel disease. This project aimed to investigate the role and expression of the cytokine/receptor pair IL-21/IL-21R in human tendinopathy. We found significantly elevated expression of IL-21 receptor message and protein in human tendon samples but found no convincing evidence of the presence of IL-21 at message or protein level. The level of expression of IL-21R message/protein in human tenocytes was significantly upregulated by proinflammatory cytokines (TNFα/IL-1β) in vitro. These findings demonstrate that IL-21R is present in early human tendinopathy mainly expressed by tenocytes and macrophages. Despite a lack of IL-21 expression, these data again suggest that early tendinopathy has an inflammatory/cytokine phenotype, which may provide novel translational targets in the treatment of tendinopathy. PMID:24757284

  13. Functional Expression of Dental Plaque Microbiota

    Directory of Open Access Journals (Sweden)

    Scott Norman Peterson

    2014-08-01

    Full Text Available Dental caries remains a significant public health problem and is considered pandemic worldwide. The prediction of dental caries based on profiling of microbial species involved in disease and equally important, the identification of species conferring dental health has proven more difficult than anticipated due to high interpersonal and geographical variability of dental plaque microbiota. We have used RNA-Seq to perform global gene expression analysis of dental plaque microbiota derived from 19 twin pairs that were either concordant (caries-active or caries-free or discordant for dental caries. The transcription profiling allowed us to define a functional core microbiota consisting of nearly 60 species. Similarities in gene expression patterns allowed a preliminary assessment of the relative contribution of human genetics, environmental factors and caries phenotype on the microbiota’s transcriptome. Correlation analysis of transcription allowed the identification of numerous functional networks, suggesting that inter-personal environmental variables may co-select for groups of genera and species. Analysis of functional role categories allowed the identification of dominant functions expressed by dental plaque biofilm communities, that highlight the biochemical priorities of dental plaque microbes to metabolize diverse sugars and cope with the acid and oxidative stress resulting from sugar fermentation. The wealth of data generated by deep sequencing of expressed transcripts enables a greatly expanded perspective concerning the functional expression of dental plaque microbiota.

  14. Functional expression of dental plaque microbiota.

    Science.gov (United States)

    Peterson, Scott N; Meissner, Tobias; Su, Andrew I; Snesrud, Erik; Ong, Ana C; Schork, Nicholas J; Bretz, Walter A

    2014-01-01

    Dental caries remains a significant public health problem and is considered pandemic worldwide. The prediction of dental caries based on profiling of microbial species involved in disease and equally important, the identification of species conferring dental health has proven more difficult than anticipated due to high interpersonal and geographical variability of dental plaque microbiota. We have used RNA-Seq to perform global gene expression analysis of dental plaque microbiota derived from 19 twin pairs that were either concordant (caries-active or caries-free) or discordant for dental caries. The transcription profiling allowed us to define a functional core microbiota consisting of nearly 60 species. Similarities in gene expression patterns allowed a preliminary assessment of the relative contribution of human genetics, environmental factors and caries phenotype on the microbiota's transcriptome. Correlation analysis of transcription allowed the identification of numerous functional networks, suggesting that inter-personal environmental variables may co-select for groups of genera and species. Analysis of functional role categories allowed the identification of dominant functions expressed by dental plaque biofilm communities, that highlight the biochemical priorities of dental plaque microbes to metabolize diverse sugars and cope with the acid and oxidative stress resulting from sugar fermentation. The wealth of data generated by deep sequencing of expressed transcripts enables a greatly expanded perspective concerning the functional expression of dental plaque microbiota.

  15. IL-21 Receptor Expression in Human Tendinopathy

    Directory of Open Access Journals (Sweden)

    Abigail L. Campbell

    2014-01-01

    Full Text Available The pathogenetic mechanisms underlying tendinopathy remain unclear, with much debate as to whether inflammation or degradation has the prominent role. Increasing evidence points toward an early inflammatory infiltrate and associated inflammatory cytokine production in human and animal models of tendon disease. The IL-21/IL-21R axis is a proinflammatory cytokine complex that has been associated with chronic inflammatory diseases including rheumatoid arthritis and inflammatory bowel disease. This project aimed to investigate the role and expression of the cytokine/receptor pair IL-21/IL-21R in human tendinopathy. We found significantly elevated expression of IL-21 receptor message and protein in human tendon samples but found no convincing evidence of the presence of IL-21 at message or protein level. The level of expression of IL-21R message/protein in human tenocytes was significantly upregulated by proinflammatory cytokines (TNFα/IL-1β in vitro. These findings demonstrate that IL-21R is present in early human tendinopathy mainly expressed by tenocytes and macrophages. Despite a lack of IL-21 expression, these data again suggest that early tendinopathy has an inflammatory/cytokine phenotype, which may provide novel translational targets in the treatment of tendinopathy.

  16. Differential gene expression during Trypanosoma cruzi metacyclogenesis

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    Marco Aurelio Krieger

    1999-09-01

    Full Text Available The transformation of epimastigotes into metacyclic trypomastigotes involves changes in the pattern of expressed genes, resulting in important morphological and functional differences between these developmental forms of Trypanosoma cruzi. In order to identify and characterize genes involved in triggering the metacyclogenesis process and in conferring to metacyclic trypomastigotes their stage specific biological properties, we have developed a method allowing the isolation of genes specifically expressed when comparing two close related cell populations (representation of differential expression or RDE. The method is based on the PCR amplification of gene sequences selected by hybridizing and subtracting the populations in such a way that after some cycles of hybridization-amplification genes specific to a given population are highly enriched. The use of this method in the analysis of differential gene expression during T. cruzi metacyclogenesis (6 hr and 24 hr of differentiation and metacyclic trypomastigotes resulted in the isolation of several clones from each time point. Northern blot analysis showed that some genes are transiently expressed (6 hr and 24 hr differentiating cells, while others are present in differentiating cells and in metacyclic trypomastigotes. Nucleotide sequencing of six clones characterized so far showed that they do not display any homology to gene sequences available in the GeneBank.

  17. Developmental Hypothyroidism Reduces the Expression of ...

    Science.gov (United States)

    Disruption of thyroid hormone (TH) is a known effect of environmental contaminants. Neurotrophins including brain-derived neurotrophic factor (BDNF) and nerve growth factor (NGF) have been implicated in brain dysfunction resulting from severe developmental TH insufficiency. Neurotrophins are also implicated in activity-dependent plasticity, a process critical for appropriate use-dependent connectivity in the developing brain and for memory formation in the adult. This study examined activity-induced expression of neurotrophin gene products in the hippocampus using the long-term potentiation (LTP) after developmental hypothyroidism induced by propylthiouracil (PTU). Pregnant rats were exposed to PTU (0 or I0ppm) via the drinking water from early gestation to weaning. Adult male offspring were anesthetized with urethane and implanted with electrodes in the dentate gyrus (00) and perforant path (PP). LTP was induced by PP stimulation and responses from 00 were monitored at 15m intervals until sacrifice of the animals 5 h later. The 00 was dissected from the stimulated and nonstimulated hemispheres for rtPCR analysis of the neurotrophins Bdnf, Ngf, Ntf3 and related genes Egrl, Arc, Klf9. We found no PTU-induced difference in basal levels of expression of any of these genes in the nonstimulated 00. LTP increased expression of Bdnf, Ngf, Arc and Klj9 in the control DG, and reduced expression of Ntf3. LTP in DG from PTU animals failed to increase expression of Bdnf,

  18. Loss of HSulf-1 expression enhances tumorigenicity by inhibiting Bim expression in ovarian cancer.

    Science.gov (United States)

    He, Xiaoping; Khurana, Ashwani; Roy, Debarshi; Kaufmann, Scott; Shridhar, Viji

    2014-10-15

    The expression of human Sulfatase1 (HSulf-1) is downregulated in the majority of primary ovarian cancer tumors, but the functional consequence of this downregulation remains unclear. Using two different shRNAs (Sh1 and Sh2), HSulf-1 expression was stably downregulated in ovarian cancer OV202 cells. We found that HSulf-1-deficient OV202 Sh1 and Sh2 cells formed colonies in soft agar. In contrast, nontargeting control (NTC) shRNA-transduced OV202 cells did not form any colonies. Moreover, subcutaneous injection of OV202 HSulf-1-deficient cells resulted in tumor formation in nude mice, whereas OV202 NTC cells did not. Also, ectopic expression of HSulf-1 in ovarian cancer SKOV3 cells significantly suppressed tumor growth in nude mice. Here, we show that HSulf-1-deficient OV202 cells have markedly decreased expression of proapoptotic Bim protein, which can be rescued by restoring HSulf-1 expression in OV202 Sh1 cells. Enhanced expression of HSulf-1 in HSulf-1-deficient SKOV3 cells resulted in increased Bim expression. Decreased Bim levels after loss of HSulf-1 were due to increased p-ERK, because inhibition of ERK activity with PD98059 resulted in increased Bim expression. However, treatment with a PI3 kinase/AKT inhibitor, LY294002, failed to show any change in Bim protein level. Importantly, rescuing Bim expression in HSulf-1 knockdown cells significantly retarded tumor growth in nude mice. Collectively, these results suggest that loss of HSulf-1 expression promotes tumorigenicity in ovarian cancer through regulating Bim expression. © 2014 UICC.

  19. Podocalyxin expression in malignant astrocytic tumors

    International Nuclear Information System (INIS)

    Hayatsu, Norihito; Kaneko, Mika Kato; Mishima, Kazuhiko; Nishikawa, Ryo; Matsutani, Masao; Price, Janet E.; Kato, Yukinari

    2008-01-01

    Podocalyxin is an anti-adhesive mucin-like transmembrane sialoglycoprotein that has been implicated in the development of aggressive forms of cancer. Podocalyxin is also known as keratan sulfate (KS) proteoglycan. Recently, we revealed that highly sulfated KS or another mucin-like transmembrane sialoglycoprotein podoplanin/aggrus is upregulated in malignant astrocytic tumors. The aim of this study is to examine the relationship between podocalyxin expression and malignant progression of astrocytic tumors. In this study, 51 astrocytic tumors were investigated for podocalyxin expression using immunohistochemistry, Western blot analysis, and quantitative real-time PCR. Immunohistochemistry detected podocalyxin on the surface of tumor cells in six of 14 anaplastic astrocytomas (42.9%) and in 17 of 31 glioblastomas (54.8%), especially around proliferating endothelial cells. In diffuse astrocytoma, podocalyxin expression was observed only in vascular endothelial cells. Podocalyxin might be associated with the malignant progression of astrocytic tumors, and be a useful prognostic marker for astrocytic tumors

  20. EXPRESSING DISTRESS IN PATIENTS WITH ADVANCED CANCER

    Directory of Open Access Journals (Sweden)

    Maura Gabriela FELEA

    2014-11-01

    Full Text Available Negative emotions (distress are recognized as part of the psychological profile of patients diagnosed with advanced stage cancer. However, most patients are not accustomed to verbalize feelings towards their physician, and generally towards family and medical care personnel. The purpose of this paper is to analyze the expression of emotions by patients in advanced stages of cancer, respectively the means by which they get to express emotions. To this respect, we identified the most common types of emotions expressed, or metaphors used by patients to describe their emotions and topics that trigger emotions. Words and phrases most commonly used are in relation to: fear, anxiety, depression, guilt, negligence, concern. They are uttered in order to depict the network created between disclosed emotions and topics on health status, symptoms, adverse effects and therapeutic choice, patient privacy, and social and family issues.

  1. Freedom of Expression, Deliberation, Autonomy, and Respect

    DEFF Research Database (Denmark)

    Rostbøll, Christian Fogh

    The strongest versions of the democracy argument for freedom of expression rely on the deliberative conception of democracy. Deliberative democracy entails both an ideal of political autonomy and of autonomous preference formation. This paper elaborates the deliberative democracy argument...... for freedom of expression in terms of its relationship to different dimensions of autonomy. In response to the objection that Enlightenment theories pose a threat to cultures that reject autonomy, it is argued that autonomy-based democracy is not only compatible with but necessary for respect for cultural...... is good for oneself and what is equally good for all. While freedom of expression is indispensable for deliberation and autonomy, this does not mean that citizens have no obligations with regard to how they speak to each other. The moral insights that deliberation delivers depends on that the participants...

  2. Snail1 Expression Is Required for Sarcomagenesis

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    Lorena Alba-Castellón

    2014-05-01

    Full Text Available Snail1 transcriptional repressor is a major inducer of epithelial-to mesenchymal transition but is very limitedly expressed in adult animals. We have previously demonstrated that Snail1 is required for the maintenance of mesenchymal stem cells (MSCs, preventing their premature differentiation. Now, we show that Snail1 controls the tumorigenic properties of mesenchymal cells. Increased Snail1 expression provides tumorigenic capabilities to fibroblastic cells; on the contrary, Snail1 depletion decreases tumor growth. Genetic depletion of Snail1 in MSCs that are deficient in p53 tumor suppressor downregulates MSC markers and prevents the capability of these cells to originate sarcomas in immunodeficient SCID mice. Notably, an analysis of human sarcomas shows that, contrarily to epithelial tumors, these neoplasms display high Snail1 expression. This is particularly clear for undifferentiated tumors, which are associated with poor outcome. Together, our results indicate a role for Snail1 in the generation of sarcomas.

  3. The human endolymphatic sac expresses natriuretic peptides

    DEFF Research Database (Denmark)

    Møller, Martin Nue; Kirkeby, Svend; Vikeså, Jonas

    2017-01-01

    OBJECTIVES/HYPOTHESIS: The function of the human endolymphatic sac (ES) has been enigmatic for decades. Hypotheses include controlling endolymphatic fluid homeostasis and inner ear immunological defense. Additionally, several studies indicate a possible endocrine capacity and a yet undefined role......: Several natriuretic peptides were found expressed significantly in the ES, including uroguanylin and brain natriuretic peptide, but also peptides regulating vascular tone, including adrenomedullin 2. In addition, both neurophysin and oxytocin (OXT) were found significantly expressed. All peptides were...... vasopressin receptors and aquaporin-2 channels in the inner ear via OXT expression. We hypothesize that the ES is likely to regulate inner ear endolymphatic homeostasis, possibly through secretion of several peptides, but it may also influence systemic and/or intracranial blood pressure through direct...

  4. Mental Health and Emotional Expression in Facebook

    Directory of Open Access Journals (Sweden)

    Eglee Duran Rodríguez

    2013-12-01

    Full Text Available The article reports the results of the project “Mental health and emotional expression in Facebook”. The research was approached from the qualitative paradigm under virtual ethnographic approach, interpreting the findings through their own players and triangulated with the views of researchers and experts in the area of mental health, emotions and information technology and communication. We concluded that a good part of users vented their secrets on Facebook, where they are able to confide and express a range of emotions and intimacies that in the real context is unlikely to give. Along these findings show that the use of Facebook serves as a space for emotional expression impacting the mental and emotional health.

  5. Evaluating Haskell expressions in a tutoring environment

    Directory of Open Access Journals (Sweden)

    Tim Olmer

    2014-12-01

    Full Text Available A number of introductory textbooks for Haskell use calculations right from the start to give the reader insight into the evaluation of expressions and the behavior of functional programs. Many programming concepts that are important in the functional programming paradigm, such as recursion, higher-order functions, pattern-matching, and lazy evaluation, can be partially explained by showing a stepwise computation. A student gets a better understanding of these concepts if she performs these evaluation steps herself. Tool support for experimenting with the evaluation of Haskell expressions is currently lacking. In this paper we present a prototype implementation of a stepwise evaluator for Haskell expressions that supports multiple evaluation strategies, specifically targeted at education. Besides performing evaluation steps the tool also diagnoses steps that are submitted by a student, and provides feedback. Instructors can add or change function definitions without knowledge of the tool's internal implementation. We discuss some preliminary results of a small survey about the tool.

  6. Plant Virus Expression Vector Development: New Perspectives

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    Kathleen Hefferon

    2014-01-01

    Full Text Available Plant made biologics have elicited much attention over recent years for their potential in assisting those in developing countries who have poor access to modern medicine. Additional applications such as the stockpiling of vaccines against pandemic infectious diseases or potential biological warfare agents are also under investigation. Plant virus expression vectors represent a technology that enables high levels of pharmaceutical proteins to be produced in a very short period of time. Recent advances in research and development have brought about the generation of superior virus expression systems which can be readily delivered to the host plant in a manner that is both efficient and cost effective. This review presents recent innovations in plant virus expression systems and their uses for producing biologics from plants.

  7. Actin expression in trypanosomatids (Euglenozoa: Kinetoplastea)

    Science.gov (United States)

    Souza, Ligia Cristina Kalb; Pinho, Rosana Elisa Gonçalves Gonçalves; Lima, Carla Vanessa de Paula; Fragoso, Stênio Perdigão; Soares, Maurilio José

    2013-01-01

    Heteroxenic and monoxenic trypanosomatids were screened for the presence of actin using a mouse polyclonal antibody produced against the entire sequence of the Trypanosoma cruzi actin gene, encoding a 41.9 kDa protein. Western blot analysis showed that this antibody reacted with a polypeptide of approximately 42 kDa in the whole-cell lysates of parasites targeting mammals (T. cruzi, Trypanosoma brucei and Leishmania major), insects (Angomonas deanei, Crithidia fasciculata, Herpetomonas samuelpessoai and Strigomonas culicis) and plants (Phytomonas serpens). A single polypeptide of approximately 42 kDa was detected in the whole-cell lysates of T. cruzi cultured epimastigotes, metacyclic trypomastigotes and amastigotes at similar protein expression levels. Confocal microscopy showed that actin was expressed throughout the cytoplasm of all the tested trypanosomatids. These data demonstrate that actin expression is widespread in trypanosomatids. PMID:23903980

  8. Actin expression in trypanosomatids (Euglenozoa: Kinetoplastea

    Directory of Open Access Journals (Sweden)

    Ligia Cristina Kalb Souza

    2013-08-01

    Full Text Available Heteroxenic and monoxenic trypanosomatids were screened for the presence of actin using a mouse polyclonal antibody produced against the entire sequence of the Trypanosoma cruzi actin gene, encoding a 41.9 kDa protein. Western blot analysis showed that this antibody reacted with a polypeptide of approximately 42 kDa in the whole-cell lysates of parasites targeting mammals (T. cruzi, Trypanosoma brucei and Leishmania major, insects (Angomonas deanei, Crithidia fasciculata, Herpetomonas samuelpessoai and Strigomonas culicis and plants (Phytomonas serpens. A single polypeptide of approximately 42 kDa was detected in the whole-cell lysates of T. cruzi cultured epimastigotes, metacyclic trypomastigotes and amastigotes at similar protein expression levels. Confocal microscopy showed that actin was expressed throughout the cytoplasm of all the tested trypanosomatids. These data demonstrate that actin expression is widespread in trypanosomatids.

  9. IER3 Expression in Childhood Myelodysplastic Syndrome

    DEFF Research Database (Denmark)

    de Vries, Andrica; Zwaan, Christian M.; Danen van Ooschot, Astrid

    Background: Childhood myelodysplastic syndrome (MDS) is a rare disease accounting for less than 5% of all hematological malignancies. In about 50% of the MDS cases an abnormal karyotype is found by conventional karyotyping, of which chromosome 6 is involved in 10%. The immediate-early-response 3...... (IER3) gene, which is located on chromosome 6p21, encodes for a glycoprotein that plays a role in the regulation of apoptosis and cell cycle progression. Recently, it was shown that IER3 gene aberrations frequently occur in adult MDS patients, which are not restricted to patients with chromosome 6...... aberrations and that low IER3 expression was associated with a worse outcome. Therefore, we investigated the frequency and prognostic impact of IER3 expression in childhood MDS. Methods: IER3 mRNA expression was determined by quantitative real-time PCR in 58 childhood MDS patients of which 17 carried...

  10. BeadArray expression analysis using bioconductor.

    Directory of Open Access Journals (Sweden)

    Matthew E Ritchie

    2011-12-01

    Full Text Available Illumina whole-genome expression BeadArrays are a popular choice in gene profiling studies. Aside from the vendor-provided software tools for analyzing BeadArray expression data (GenomeStudio/BeadStudio, there exists a comprehensive set of open-source analysis tools in the Bioconductor project, many of which have been tailored to exploit the unique properties of this platform. In this article, we explore a number of these software packages and demonstrate how to perform a complete analysis of BeadArray data in various formats. The key steps of importing data, performing quality assessments, preprocessing, and annotation in the common setting of assessing differential expression in designed experiments will be covered.

  11. Capsular Polysaccharide Expression in Commensal Streptococcus Species

    DEFF Research Database (Denmark)

    Skov Sørensen, Uffe B; Yao, Kaihu; Yang, Yonghong

    2016-01-01

    Expression of a capsular polysaccharide is considered a hallmark of most invasive species of bacteria, including Streptococcus pneumoniae, in which the capsule is among the principal virulence factors and is the basis for successful vaccines. Consequently, it was previously assumed that capsule....... pneumoniae evolved by import of cps fragments from commensal Streptococcus species, resulting in a mosaic of genes of different origins. The demonstrated antigenic identity of at least eight of the numerous capsular polysaccharide structures expressed by commensal streptococci with recognized serotypes of S...... of Streptococcus pneumoniae and is the basis for successful vaccines against infections caused by this important pathogen. Contrasting with previous assumptions, this study showed that expression of capsular polysaccharides by the same genetic mechanisms is a general property of closely related species...

  12. Gene expression during normal and FSHD myogenesis

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    Sowden Janet

    2011-09-01

    Full Text Available Abstract Background Facioscapulohumeral muscular dystrophy (FSHD is a dominant disease linked to contraction of an array of tandem 3.3-kb repeats (D4Z4 at 4q35. Within each repeat unit is a gene, DUX4, that can encode a protein containing two homeodomains. A DUX4 transcript derived from the last repeat unit in a contracted array is associated with pathogenesis but it is unclear how. Methods Using exon-based microarrays, the expression profiles of myogenic precursor cells were determined. Both undifferentiated myoblasts and myoblasts differentiated to myotubes derived from FSHD patients and controls were studied after immunocytochemical verification of the quality of the cultures. To further our understanding of FSHD and normal myogenesis, the expression profiles obtained were compared to those of 19 non-muscle cell types analyzed by identical methods. Results Many of the ~17,000 examined genes were differentially expressed (> 2-fold, p DUX4 RNA isoform was detected by RT-PCR in FSHD myoblast and myotube preparations only at extremely low levels. Unique insights into myogenesis-specific gene expression were also obtained. For example, all four Argonaute genes involved in RNA-silencing were significantly upregulated during normal (but not FSHD myogenesis relative to non-muscle cell types. Conclusions DUX4's pathogenic effect in FSHD may occur transiently at or before the stage of myoblast formation to establish a cascade of gene dysregulation. This contrasts with the current emphasis on toxic effects of experimentally upregulated DUX4 expression at the myoblast or myotube stages. Our model could explain why DUX4's inappropriate expression was barely detectable in myoblasts and myotubes but nonetheless linked to FSHD.

  13. Transcriptome study of differential expression in schizophrenia

    Science.gov (United States)

    Sanders, Alan R.; Göring, Harald H. H.; Duan, Jubao; Drigalenko, Eugene I.; Moy, Winton; Freda, Jessica; He, Deli; Shi, Jianxin; Gejman, Pablo V.

    2013-01-01

    Schizophrenia genome-wide association studies (GWAS) have identified common SNPs, rare copy number variants (CNVs) and a large polygenic contribution to illness risk, but biological mechanisms remain unclear. Bioinformatic analyses of significantly associated genetic variants point to a large role for regulatory variants. To identify gene expression abnormalities in schizophrenia, we generated whole-genome gene expression profiles using microarrays on lymphoblastoid cell lines (LCLs) from 413 cases and 446 controls. Regression analysis identified 95 transcripts differentially expressed by affection status at a genome-wide false discovery rate (FDR) of 0.05, while simultaneously controlling for confounding effects. These transcripts represented 89 genes with functions such as neurotransmission, gene regulation, cell cycle progression, differentiation, apoptosis, microRNA (miRNA) processing and immunity. This functional diversity is consistent with schizophrenia's likely significant pathophysiological heterogeneity. The overall enrichment of immune-related genes among those differentially expressed by affection status is consistent with hypothesized immune contributions to schizophrenia risk. The observed differential expression of extended major histocompatibility complex (xMHC) region histones (HIST1H2BD, HIST1H2BC, HIST1H2BH, HIST1H2BG and HIST1H4K) converges with the genetic evidence from GWAS, which find the xMHC to be the most significant susceptibility locus. Among the differentially expressed immune-related genes, B3GNT2 is implicated in autoimmune disorders previously tied to schizophrenia risk (rheumatoid arthritis and Graves’ disease), and DICER1 is pivotal in miRNA processing potentially linking to miRNA alterations in schizophrenia (e.g. MIR137, the second strongest GWAS finding). Our analysis provides novel candidate genes for further study to assess their potential contribution to schizophrenia. PMID:23904455

  14. Differential expression of cysteine desulfurases in soybean

    Directory of Open Access Journals (Sweden)

    Heis Marta D

    2011-11-01

    Full Text Available Abstract Background Iron-sulfur [Fe-S] clusters are prosthetic groups required to sustain fundamental life processes including electron transfer, metabolic reactions, sensing, signaling, gene regulation and stabilization of protein structures. In plants, the biogenesis of Fe-S protein is compartmentalized and adapted to specific needs of the cell. Many environmental factors affect plant development and limit productivity and geographical distribution. The impact of these limiting factors is particularly relevant for major crops, such as soybean, which has worldwide economic importance. Results Here we analyze the transcriptional profile of the soybean cysteine desulfurases NFS1, NFS2 and ISD11 genes, involved in the biogenesis of [Fe-S] clusters, by quantitative RT-PCR. NFS1, ISD11 and NFS2 encoding two mitochondrial and one plastid located proteins, respectively, are duplicated and showed distinct transcript levels considering tissue and stress response. NFS1 and ISD11 are highly expressed in roots, whereas NFS2 showed no differential expression in tissues. Cold-treated plants showed a decrease in NFS2 and ISD11 transcript levels in roots, and an increased expression of NFS1 and ISD11 genes in leaves. Plants treated with salicylic acid exhibited increased NFS1 transcript levels in roots but lower levels in leaves. In silico analysis of promoter regions indicated the presence of different cis-elements in cysteine desulfurase genes, in good agreement with differential expression of each locus. Our data also showed that increasing of transcript levels of mitochondrial genes, NFS1/ISD11, are associated with higher activities of aldehyde oxidase and xanthine dehydrogenase, two cytosolic Fe-S proteins. Conclusions Our results suggest a relationship between gene expression pattern, biochemical effects, and transcription factor binding sites in promoter regions of cysteine desulfurase genes. Moreover, data show proportionality between NFS1 and ISD11

  15. Population-expression models of immune response

    International Nuclear Information System (INIS)

    Stromberg, Sean P; Antia, Rustom; Nemenman, Ilya

    2013-01-01

    The immune response to a pathogen has two basic features. The first is the expansion of a few pathogen-specific cells to form a population large enough to control the pathogen. The second is the process of differentiation of cells from an initial naive phenotype to an effector phenotype which controls the pathogen, and subsequently to a memory phenotype that is maintained and responsible for long-term protection. The expansion and the differentiation have been considered largely independently. Changes in cell populations are typically described using ecologically based ordinary differential equation models. In contrast, differentiation of single cells is studied within systems biology and is frequently modeled by considering changes in gene and protein expression in individual cells. Recent advances in experimental systems biology make available for the first time data to allow the coupling of population and high dimensional expression data of immune cells during infections. Here we describe and develop population-expression models which integrate these two processes into systems biology on the multicellular level. When translated into mathematical equations, these models result in non-conservative, non-local advection-diffusion equations. We describe situations where the population-expression approach can make correct inference from data while previous modeling approaches based on common simplifying assumptions would fail. We also explore how model reduction techniques can be used to build population-expression models, minimizing the complexity of the model while keeping the essential features of the system. While we consider problems in immunology in this paper, we expect population-expression models to be more broadly applicable. (paper)

  16. Trpm5 expression in the olfactory epithelium.

    Science.gov (United States)

    Pyrski, Martina; Eckstein, Eugenia; Schmid, Andreas; Bufe, Bernd; Weiss, Jan; Chubanov, Vladimir; Boehm, Ulrich; Zufall, Frank

    2017-04-01

    The Ca 2+ -activated monovalent cation channel Trpm5 is a key element in chemotransduction of taste receptor cells of the tongue, but the extent to which Trpm5 channels are expressed in olfactory sensory neurons (OSNs) of the main olfactory epithelium (MOE) of adult mice as part of a specific pheromonal detection system is debated. Here, we used a novel Trpm5-IRES-Cre knockin strain to drive Cre recombinase expression, employed previously validated Trpm5 antibodies, performed in situ hybridization experiments to localize Trpm5 RNA, and searched extensively for Trpm5 splice variants in genetically-labeled, Trpm5-expressing MOE cells. In contrast to previous reports, we find no evidence for the existence in adult mouse OSNs of the classical Trpm5 channel known from taste cells. We show that Trpm5-expressing adult OSNs express a novel Trpm5 splice variant, Trpm5-9, that is unlikely to form a functional cation channel by itself. We also demonstrate that Trpm5 is transiently expressed in a subpopulation of mature OSNs in the embryonic olfactory epithelium, indicating that Trpm5 channels could play a specific role in utero during a narrow developmental time window. Ca 2+ imaging with GCaMP3 under the control of the Trpm5-IRES-Cre allele using a newly developed MOE wholemount preparation of the adult olfactory epithelium reveals that Trpm5-GCaMP3 OSNs comprise a heterogeneous group of sensory neurons many of which can detect general odorants. Together, these studies are essential for understanding the role of transient receptor potential channels in mammalian olfaction. Copyright © 2017 Elsevier Inc. All rights reserved.

  17. Population-expression models of immune response

    Science.gov (United States)

    Stromberg, Sean P.; Antia, Rustom; Nemenman, Ilya

    2013-06-01

    The immune response to a pathogen has two basic features. The first is the expansion of a few pathogen-specific cells to form a population large enough to control the pathogen. The second is the process of differentiation of cells from an initial naive phenotype to an effector phenotype which controls the pathogen, and subsequently to a memory phenotype that is maintained and responsible for long-term protection. The expansion and the differentiation have been considered largely independently. Changes in cell populations are typically described using ecologically based ordinary differential equation models. In contrast, differentiation of single cells is studied within systems biology and is frequently modeled by considering changes in gene and protein expression in individual cells. Recent advances in experimental systems biology make available for the first time data to allow the coupling of population and high dimensional expression data of immune cells during infections. Here we describe and develop population-expression models which integrate these two processes into systems biology on the multicellular level. When translated into mathematical equations, these models result in non-conservative, non-local advection-diffusion equations. We describe situations where the population-expression approach can make correct inference from data while previous modeling approaches based on common simplifying assumptions would fail. We also explore how model reduction techniques can be used to build population-expression models, minimizing the complexity of the model while keeping the essential features of the system. While we consider problems in immunology in this paper, we expect population-expression models to be more broadly applicable.

  18. MHC class II expression in lung cancer.

    Science.gov (United States)

    He, Yayi; Rozeboom, Leslie; Rivard, Christopher J; Ellison, Kim; Dziadziuszko, Rafal; Yu, Hui; Zhou, Caicun; Hirsch, Fred R

    2017-10-01

    Immunotherapy is an exciting development in lung cancer research. In this study we described major histocompatibility complex (MHC) Class II protein expression in lung cancer cell lines and patient tissues. We studied MHC Class II (DP, DQ, DR) (CR3/43, Abcam) protein expression in 55 non-small cell lung cancer (NSCLC) cell lines, 42 small cell lung cancer (SCLC) cell lines and 278 lung cancer patient tissues by immunohistochemistry (IHC). Seven (12.7%) NSCLC cell lines were positive for MHC Class II. No SCLC cell lines were found to be MHC Class II positive. We assessed 139 lung cancer samples available in the Hirsch Lab for MHC Class II. There was no positive MHC Class II staining on SCLC tumor cells. MHC Class II expression on TILs in SCLC was significantly lower than that on TILs in NSCLC (P<0.001). MHC Class II was also assessed in an additional 139 NSCLC tumor tissues from Medical University of Gdansk, Poland. Patients with positive staining of MHC Class II on TILs had longer regression-free survival (RFS) and overall survival (OS) than those whose TILs were MHC Class II negative (2.980 years, 95% CI 1.628-4.332 vs. 1.050 years, 95% CI 0.556-1.554, P=0.028) (3.230 years, 95% CI 2.617-3.843 vs. 1.390 years, 95% CI 0.629-2.151, P=0.014). MHC Class II was expressed both in NSCLC cell lines and tissues. However, MHC Class II was not detected in SCLC cell lines or tissue tumor cells. MHC Class II expression was lower on SCLC TILs than on NSCLC TILs. Loss of expression of MHC Class II on SCLC tumor cells and reduced expression on SCLC TILs may be a means of escaping anti-cancer immunity. Higher MHC Class II expression on TILs was correlated with better prognosis in patients with NSCLC. Copyright © 2017. Published by Elsevier B.V.

  19. Expert Oracle Application Express Plug-Ins

    CERN Document Server

    D'Souza, Martin Giffy

    2011-01-01

    Expert Oracle Application Express Plugins is your "go to" book on the groundbreaking plugin architecture introduced in Oracle Application Express 4.0. Using the new APEX functionality, you can create well-packaged, documented, reusable components and reliably leverage your coding investments across many applications. Components you create can define new item and region types, specify validation processes, and present dynamic actions to client applications. You can design innovative and colorful ways to display information, such as displaying the temperature using an image of a thermometer, or

  20. Japanese Onomatopoeic Expressions with Quantitative Meaning

    Directory of Open Access Journals (Sweden)

    Nataliia Vitalievna KUTAFEVA

    2015-06-01

    Full Text Available Grammatical category of quantity is absent in the Japanese language but there are many different grammatical, lexical, derivational and morphological modes of expression of quantity. This paper provides an analysis of the lexical mode of expression of quantitative meanings and their semantics with the help of onomatopoeic (giongo and mimetic (gitaigo words in the Japanese language. Based on the analysis, we have distinguished the following semantic groups: mimetic words A existence of some (large or small quantity (things, phenomena and people, B degree of change of quantity; and onomatopoeic words A single sound, B repetitive sounds.

  1. Artistic expression in teaching-learning.

    Science.gov (United States)

    Condon, Barbara Backer

    2009-10-01

    The use of art to enhance teaching-learning in nursing has proven beneficial in the past. While there are variety of methods to utilize art in education that exist, the author discusses artistic expression, as described by the humanbecoming school of thought, being used for the first time during the final term of the senior year for nursing students. This artistic expression was part of a variety of assignments connected to the students' preceptor experiences. The author in this column demonstrates a profound coming to know and personal enlightenment through a reflective process that accentuates the importance of not only allowing, but encouraging creativity throughout a nursing curriculum.

  2. Expression of human PTPN22 alleles

    DEFF Research Database (Denmark)

    Nielsen, C; Barington, T; Husby, S

    2007-01-01

    Considering the female predominance in most of the autoimmune disorders that associate with the PTPN22 Trp620 variant and the complexity by which this variant influences immunologic tolerance, the objective of this study was to ascertain if the allele-specific expression of the disease...... and 72 h of activation, respectively, the expression of PTPN22 1858C- and T-alleles increased to the same extent (P=0.64). The present result essentially excludes such phenomena as a partial explanation for the female predominance in most of the autoimmune disorders that associate with the PTPN22 Trp620...

  3. Circadian Kisspeptin expression in human term placenta.

    Science.gov (United States)

    de Pedro, M A; Morán, J; Díaz, I; Murias, L; Fernández-Plaza, C; González, C; Díaz, E

    2015-11-01

    Kisspeptin is an essential gatekeeper of reproductive function. During pregnancy high circulating levels of kisspeptin have been described, however the clear role of this neuropeptide in pregnancy remains unknown. We tested the existence of rhythmic kisspeptin expression in human full-term placenta from healthy pregnant women at six different time points during the day. The data obtained by Western blotting were fitted to a mathematical model (Fourier series), demonstrating, for the first time, the existence of a circadian rhythm in placental kisspeptin expression. Copyright © 2015 Elsevier Ltd. All rights reserved.

  4. Positron emission tomography imaging of gene expression

    International Nuclear Information System (INIS)

    Tang Ganghua

    2001-01-01

    The merging of molecular biology and nuclear medicine is developed into molecular nuclear medicine. Positron emission tomography (PET) of gene expression in molecular nuclear medicine has become an attractive area. Positron emission tomography imaging gene expression includes the antisense PET imaging and the reporter gene PET imaging. It is likely that the antisense PET imaging will lag behind the reporter gene PET imaging because of the numerous issues that have not yet to be resolved with this approach. The reporter gene PET imaging has wide application into animal experimental research and human applications of this approach will likely be reported soon

  5. SQL Server Management Studio Express 02

    OpenAIRE

    Suárez Cueto, Armando; Moreda Pozo, Paloma; Mingot Latorre, Iván

    2013-01-01

    Segunda parte de los primeros pasos en el uso de este programa cliente de acceso y administración de SQL Server. Este cliente, en su versión Express, es gratuito. El ejemplo del vídeo se conecta con un servidor remoto SQL Server 2008 R2. Modificar tablas. Exportar definiciones del esquema. Resultados a cuadrícula o texto. Guardar resultados. Captura: BB Flashback Express Recorder 4.1.0. Edición vídeo: Adobe Premiere Pro CS5.5. Edición audio: Adobe Audition CS5.5.

  6. A recombinant rabies virus expressing luciferase.

    Science.gov (United States)

    Liang, H; Tan, Y; Dun, C; Guo, X

    2010-01-01

    A recombinant Rabies virus (RV) expressing firefly luciferase (rRV-luc) was generated by an improved reverse genetics system. Its biological properties were compared with those of the parental RV. The rRV-luc grew in BHK-21 cells similarly to RV, but its virulence for mice was weaker as shown by the lower infectious titers in brain. Rising infectious titers of rRV-luc during its passaging in BHK-21 cells indicated a virus adaptation, while the luciferase (luc) expression was stable. These results suggest that the recombinant RV carrying luc gene might prove a useful tool for further analysis of pathogenesis of RV in small animal models.

  7. Oncomirs Expression Profiling in Uterine Leiomyosarcoma Cells

    Directory of Open Access Journals (Sweden)

    Bruna Cristine de Almeida

    2017-12-01

    Full Text Available MicroRNAs (miRNAs are small non-coding RNAs that act as regulators of gene expression at the post-transcriptional level. They play a key role in several biological processes. Their abnormal expression may lead to malignant cell transformation. This study aimed to evaluate the expression profile of 84 miRNAs involved in tumorigenesis in immortalized cells of myometrium (MM, uterine leiomyoma (ULM, and uterine leiomyosarcoma (ULMS. Specific cell lines were cultured and qRT-PCR was performed. Thirteen miRNAs presented different expression profiles in ULM and the same thirteen in ULMS compared to MM. Eight miRNAs were overexpressed, and five were underexpressed in ULM. In ULMS cells, five miRNAs exhibited an overexpression and eight were down-regulated. Six miRNAs (miR-1-3p, miR-130b-3p, miR-140-5p, miR-202-3p, miR-205-5p, and miR-7-5p presented a similar expression pattern in cell lines compared to patient samples. Of these, only three miRNAs showed significant expression in ULM (miR-1-3p, miR-140-5p, and miR-7-5p and ULMS (miR-1-3p, miR-202-3p, and miR-7-5p. Our preliminary approach identified 24 oncomirs with an altered expression profile in ULM and ULMS cells. We identified four differentially expressed miRNAs with the same profile when compared with patients’ samples, which strongly interacted with relevant genes, including apoptosis regulator (BCL2, epidermal growth factor receptor (EGFR, vascular endothelial growth factor A (VEGFA, insulin like growth factor 1 receptor (IGF1R,serine/threonine kinase (RAF1, receptor tyrosine kinase (MET, and bHLH transcription factor (MYCN. This led to alterations in their mRNA-target.

  8. Transitional cell carcinoma express vitamin D receptors

    DEFF Research Database (Denmark)

    Hermann, G G; Andersen, C B

    1997-01-01

    Recently, vitamin D analogues have shown antineoplastic effect in several diseases. Vitamin D analogues exert its effect by interacting with the vitamin D receptor (VDR). Studies of VDR in transitional cell carcinoma (TCC) have not been reported. The purpose of the present study was therefore.......05). Similarly, also tumor grade appeared to be related to the number of cells expressing the receptor. Normal urothlium also expressed VDR but only with low intensity. Our study shows that TCC cells possess the VDR receptor which may make them capable to respond to stimulation with vitamin D, but functional...

  9. MEMBRANE LEc EXPRESSION IN BREAST CANCER CELLS

    Directory of Open Access Journals (Sweden)

    Ya. A. Udalova

    2009-01-01

    Full Text Available Affine chromatography was used to isolate Lec antibodies from the sera of a healthy female donor with the high titers of these anti- bodies, which were labeled with biotin. The study enrolled 51 patients with primary breast cancer (BC. Antigen expression was found by immunohistochemistry and flow cytometry. With these two techniques being used, the detection rate of Lec expression in BC cells was 65% (33/51; the antigen was most frequently found by flow cytometry as compared with immunohistochemistry: 72 and 58% of cases, respectively.

  10. Comparative gene expression of intestinal metabolizing enzymes.

    Science.gov (United States)

    Shin, Ho-Chul; Kim, Hye-Ryoung; Cho, Hee-Jung; Yi, Hee; Cho, Soo-Min; Lee, Dong-Goo; Abd El-Aty, A M; Kim, Jin-Suk; Sun, Duxin; Amidon, Gordon L

    2009-11-01

    The purpose of this study was to compare the expression profiles of drug-metabolizing enzymes in the intestine of mouse, rat and human. Total RNA was isolated from the duodenum and the mRNA expression was measured using Affymetrix GeneChip oligonucleotide arrays. Detected genes from the intestine of mouse, rat and human were ca. 60% of 22690 sequences, 40% of 8739 and 47% of 12559, respectively. Total genes of metabolizing enzymes subjected in this study were 95, 33 and 68 genes in mouse, rat and human, respectively. Of phase I enzymes, the mouse exhibited abundant gene expressions for Cyp3a25, Cyp4v3, Cyp2d26, followed by Cyp2b20, Cyp2c65 and Cyp4f14, whereas, the rat showed higher expression profiles of Cyp3a9, Cyp2b19, Cyp4f1, Cyp17a1, Cyp2d18, Cyp27a1 and Cyp4f6. However, the highly expressed P450 enzymes were CYP3A4, CYP3A5, CYP4F3, CYP2C18, CYP2C9, CYP2D6, CYP3A7, CYP11B1 and CYP2B6 in the human. For phase II enzymes, glucuronosyltransferase Ugt1a6, glutathione S-transferases Gstp1, Gstm3 and Gsta2, sulfotransferase Sult1b1 and acyltransferase Dgat1 were highly expressed in the mouse. The rat revealed predominant expression of glucuronosyltransferases Ugt1a1 and Ugt1a7, sulfotransferase Sult1b1, acetyltransferase Dlat and acyltransferase Dgat1. On the other hand, in human, glucuronosyltransferases UGT2B15 and UGT2B17, glutathione S-transferases MGST3, GSTP1, GSTA2 and GSTM4, sulfotransferases ST1A3 and SULT1A2, acetyltransferases SAT1 and CRAT, and acyltransferase AGPAT2 were dominantly detected. Therefore, current data indicated substantial interspecies differences in the pattern of intestinal gene expression both for P450 enzymes and phase II drug-metabolizing enzymes. This genomic database is expected to improve our understanding of interspecies variations in estimating intestinal prehepatic clearance of oral drugs.

  11. Gen-Struktur und Gen-Expression

    Science.gov (United States)

    Schütz, Günther

    1981-04-01

    In the chicken oviduct the synthesis of the egg-white proteins ovalbumin, conalbumin, ovomucoid and lysozyme is controlled by the female sex steroids. The steroid-controlled rate of synthesis of these proteins is closely correlated to the cellular concentration of the egg-white protein mRNAs. The accumulation of these mRNAs is achieved by a drecreased rate of degradation and an increased rate of synthesis. To understand the molecular mechanism that regulates the expression of this group of genes we have isolated the lysozyme and ovomucoid gene by gene-cloning. The structure and expression of the lysozyme gene has been studied.

  12. Assigning Numerical Scores to Linguistic Expressions

    Directory of Open Access Journals (Sweden)

    María Jesús Campión

    2017-07-01

    Full Text Available In this paper, we study different methods of scoring linguistic expressions defined on a finite set, in the search for a linear order that ranks all those possible expressions. Among them, particular attention is paid to the canonical extension, and its representability through distances in a graph plus some suitable penalization of imprecision. The relationship between this setting and the classical problems of numerical representability of orderings, as well as extension of orderings from a set to a superset is also explored. Finally, aggregation procedures of qualitative rankings and scorings are also analyzed.

  13. Decidability and Expressiveness of Recursive Weighted Logic

    DEFF Research Database (Denmark)

    Xue, Bingtian; Larsen, Kim Guldstrand; Mardare, Radu Iulian

    2014-01-01

    Labelled weighted transition systems (LWSs) are transition systems labelled with actions and real numbers. The numbers represent the costs of the corresponding actions in terms of resources. RecursiveWeighted Logic (RWL) is a multimodal logic that expresses qualitative and quantitative properties...... of LWSs. It is endowed with simultaneous recursive equations, which specify the weakest properties satisfied by the recursive variables. We demonstrate that RWL is sufficiently expressive to characterize weighted-bisimilarity of LWSs. In addition, we prove that the logic is decidable, i...

  14. Metallothionein expression and roles in the CNS

    DEFF Research Database (Denmark)

    Penkowa, Milena

    2002-01-01

    -I+II) are regulated and expressed coordinately and are currently the best characterized MT isoforms. This review will focus on the expression and roles of MT-I+II in the CNS. MT-I+II are implicated in diverse physiological and pathophysiological functions, such as metal ion metabolism, regulation of the CNS...... inflammatory response, protection against reactive oxygen species (ROS) and oxidative stress, reduction of apoptotic cell death, and stimulation of neuroregeneration and brain tissue repair in vivo. Accordingly, brain tissue damage and neurodegeneration during pathological conditions and the accompanying...

  15. "Expression" and Verbal Expression: On Communication in an Upper Secondary Dance Class

    Science.gov (United States)

    Englund, Boel; Sandstrom, Birgitta

    2015-01-01

    The aim of the study is to examine how dance teachers express themselves verbally in teaching situations where movement training is combined with "expression". The empirical material consists of films and tapes from a 130 min long dance class at upper secondary school, and a taped conversation with the teacher about episodes from the…

  16. Perceiving and producing facial expressions of emotion : The role of dynamic expressions and culture

    NARCIS (Netherlands)

    Fang, X.

    2018-01-01

    We spend much of our waking lives interacting with other people, reading their facial expressions to figure out what they might be feeling, thinking, or intending to do next (Ekman 1994; Fridlund 1994). At the same time, we also express our own feelings, thoughts, and intentions through facial

  17. Gene Expression Commons: an open platform for absolute gene expression profiling.

    Directory of Open Access Journals (Sweden)

    Jun Seita

    Full Text Available Gene expression profiling using microarrays has been limited to comparisons of gene expression between small numbers of samples within individual experiments. However, the unknown and variable sensitivities of each probeset have rendered the absolute expression of any given gene nearly impossible to estimate. We have overcome this limitation by using a very large number (>10,000 of varied microarray data as a common reference, so that statistical attributes of each probeset, such as the dynamic range and threshold between low and high expression, can be reliably discovered through meta-analysis. This strategy is implemented in a web-based platform named "Gene Expression Commons" (https://gexc.stanford.edu/ which contains data of 39 distinct highly purified mouse hematopoietic stem/progenitor/differentiated cell populations covering almost the entire hematopoietic system. Since the Gene Expression Commons is designed as an open platform, investigators can explore the expression level of any gene, search by expression patterns of interest, submit their own microarray data, and design their own working models representing biological relationship among samples.

  18. Athero Express : ATHERO-sclerotic plaque EXPRESSion in relation to vascular events and patient characteristics

    NARCIS (Netherlands)

    Verhoeven, B.A.N.

    2006-01-01

    Athero-Express is a tissue bank study, designed to investigate the expression of atherosclerotic derived biological variables in relation to the long-term outcome of patients undergoing carotid endarterectomy. Its design includes both cross-sectional and follow-up studies, the results from which

  19. Elevated TATA-binding protein expression drives vascular endothelial growth factor expression in colon cancer.

    Science.gov (United States)

    Johnson, Sandra A S; Lin, Justin J; Walkey, Christopher J; Leathers, Michael P; Coarfa, Cristian; Johnson, Deborah L

    2017-07-25

    The TATA-binding protein (TBP) plays a central role in eukaryotic gene transcription. Given its key function in transcription initiation, TBP was initially thought to be an invariant protein. However, studies showed that TBP expression is upregulated by oncogenic signaling pathways. Furthermore, depending on the cell type, small increases in cellular TBP amounts can induce changes in cellular growth properties towards a transformed phenotype. Here we sought to identify the specific TBP-regulated gene targets that drive its ability to induce tumorigenesis. Using microarray analysis, our results reveal that increases in cellular TBP concentrations produce selective alterations in gene expression that include an enrichment for genes involved in angiogenesis. Accordingly, we find that TBP levels modulate VEGFA expression, the master regulator of angiogenesis. Increases in cellular TBP amounts induce VEGFA expression and secretion to enhance cell migration and tumor vascularization. TBP mediates changes in VEGFA transcription requiring its recruitment at a hypoxia-insensitive proximal TSS, revealing a mechanism for VEGF regulation under non-stress conditions. The results are clinically relevant as TBP expression is significantly increased in both colon adenocarcinomas as well as adenomas relative to normal tissue. Furthermore, TBP expression is positively correlated with VEGFA expression. Collectively, these studies support the idea that increases in TBP expression contribute to enhanced VEGFA transcription early in colorectal cancer development to drive tumorigenesis.

  20. Expression of MHC Class I on breast cancer cells correlates inversely with HER2 expression.

    Science.gov (United States)

    Inoue, Masayuki; Mimura, Kousaku; Izawa, Shinichiro; Shiraishi, Kensuke; Inoue, Ayako; Shiba, Shugo; Watanabe, Mitsuaki; Maruyama, Takanori; Kawaguchi, Yoshihiko; Inoue, Shingo; Kawasaki, Tomonori; Choudhury, Aniruddha; Katoh, Ryohei; Fujii, Hideki; Kiessling, Rolf; Kono, Koji

    2012-10-01

    HER2 is a promising target for immunotherapeutic interventions with T cell-based approaches since it is amplified and overexpressed in 20-30% of breast cancers. However, several previous studies including ours showed that HER2-overexpressing tumors may escape cytotoxic T lymphocyte-mediated lysis by downregulating MHC Class I and components of the antigen-processing machinery. The aims of the present study were to analyze the relationship between HER2 and MHC Class I expression and to elucidate the mechanisms underlying MHC Class I downregulation in breast cancer. We explored expression of HER2, MHC Class I, PTEN, Ki67, estrogen and progesterone expression in 70 breast cancer patients by immunohistochemistry (IHC) and analyzed their correlation. We also explored the components of the signal transduction pathway that are involved in the regulation of MHC Class I expression using small-interfering RNAs targeting HER2 as well as an inhibitor of HER2 signaling. HER2 expression in breast cancers correlated inversely with MHC Class I expression analyzed by IHC. HER2 depletion by small-interfering RNAs resulted in MHC Class I upregulation. Moreover, MHC Class I expression on breast cancer cell lines was upregulated by PD98059, an inhibitor of mitogen-associated protein kinases, in a dose-dependent manner. Thus, agents that target the MAPK signaling pathway may increase MHC Class I expression in breast cancer cells.